##maf version=1 scoring=roast.v3.3
a score=3024.000000
s hg38.chrX_KI270880v1_alt             0 7 +    284869 GAGAGTC
s panPan2.chrUn_NW_014024225v1     37648 7 +    105888 GAGGGTC
i panPan2.chrUn_NW_014024225v1 N 0 C 0
s gorGor5.CYUI01015925v1           72717 7 +    417917 GAGGGTC
i gorGor5.CYUI01015925v1       N 0 C 0
s macFas5.chr7                 171661818 7 - 171882078 GAGGGTG
i macFas5.chr7                 N 0 C 0

a score=3000.000000
s hg38.chrX_KI270880v1_alt             7 3 +    284869 CGG
s panPan2.chrUn_NW_014024225v1     37655 3 +    105888 CGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           72724 3 +    417917 CGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171661825 3 - 171882078 CGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118475 3 +  25972781 CGG
i macNem1.NW_012017243v1       N 0 C 0

a score=46977.000000
s hg38.chrX_KI270880v1_alt            10 23 +    284869 AACGCCGCCTCGGGGGCTTGACT
s panPan2.chrUn_NW_014024225v1     37658 23 +    105888 AACGCCGCCTCGGGGGCTTGACT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           72727 23 +    417917 AACGCCGCCTCGGGGGCTTGACT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72265 23 + 149150640 AACGCCGCCTCGGGGGCTTGACT
i rheMac8.chrX                 N 0 C 0
s macFas5.chr7                 171661828 23 - 171882078 AACGCCGCCTCGGGGGCTTGACT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118478 23 +  25972781 AACGCCGCCTCGGGGGCTTGACT
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          131893 23 +   1230721 AACGCCGCCTCGGGGGCTTGACT
i colAng1.NW_012115411v1       N 0 I 9

a score=25283.000000
s hg38.chrX_KI270880v1_alt            33 25 +    284869 -CCAGCCCCGGGGATCGAGAACGGCG
s panPan2.chrUn_NW_014024225v1     37681 25 +    105888 -CCAGCCCCAGGGATCGAGAACGGCG
i panPan2.chrUn_NW_014024225v1 C 0 M 794
s gorGor5.CYUI01015925v1           72750 25 +    417917 -CCAGCCCCGGGGATCCAGAACGGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72288 26 + 149150640 TCAATCTCCGGGGATCCCGAACGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171661851 26 - 171882078 TCAATCTCCGGGGATCCCGAACGCCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118501 26 +  25972781 TCAATCTCCGGGGATCCCGAACGCCG
i macNem1.NW_012017243v1       C 0 C 0
e colAng1.NW_012115411v1          131916  9 +   1230721 I

a score=-1160.000000
s hg38.chrX_KI270880v1_alt            58 4 +    284869 -CCCA
s gorGor5.CYUI01015925v1           72775 4 +    417917 -CCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72314 4 + 149150640 CTAC-
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171661877 4 - 171882078 CTCC-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118527 4 +  25972781 CTCC-
i macNem1.NW_012017243v1       C 0 C 0
e colAng1.NW_012115411v1          131916 9 +   1230721 I
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=20754.000000
s hg38.chrX_KI270880v1_alt            62 15 +    284869 GGGGTCCCTACGTCT
s gorGor5.CYUI01015925v1           72779 15 +    417917 GGGGTCCCTACGTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72320 15 + 149150640 GGGGTCCCCACGTCT
i rheMac8.chrX                 I 2 C 0
s macFas5.chr7                 171661881 15 - 171882078 GGGGTCCCCACGTCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118531 15 +  25972781 GGGGTCCCCACGTCT
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          131925 15 +   1230721 GGGGTCCCTACGTCT
i colAng1.NW_012115411v1       I 9 C 0
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=305530.000000
s hg38.chrX_KI270880v1_alt            77 173 +    284869 GCCTTGGGGGCTCGAGTCCCGCCCTGGGCGTCCGTGACGTCGCCCAGGGGTCTCCACGTCTGTCCTGGAACCTGGAGAGCCGCCGTGGGGGCCCCGGAAGCCGCCCAGGAGTCCCCACGTCTGCCCTGGGGGCTCGAGTCCAGCTCTCAGGGTCCCGGACGCCACCCAGGGGG
s gorGor5.CYUI01015925v1           72794 173 +    417917 GCCTTGGGGGCTCGAATCCCTCCCTGGGCGTCCGTGACGTCGCCCAGGGGTCTCCACGTCTGCCCTGGAACCTGGAGAGCCGCCGTGGGGGTCCCGGAAGCCGCCAAGGAGTCCCCACGTGTGCCCTGGGGGCTCTTGTCCAGCTCTGGGGGTCCCGGACGCCACCCAGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72335 173 + 149150640 GCCTTGGGGGCTCGAGTCCAGCCCTGGGGGTCCCGGACACCGCCCGGGGGTCTCTACGTCTGCTCTGGAGCCTGGAGTGCCGCCGTGGGGGTCCCGGACGCCGCCCAGGAGTCCCCACGTCTGCCCTGGGGGCATGAGTCCAGCCCTGGGGGTCCCGGACGCCACCCAGGGAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171661896 173 - 171882078 GCCTTGGGGGCTCGAGTCCAGCCCTGGGGGTCCCGGACACCGCCCGGGGGTCTCTACGTCTGCTCTGGAGCCTGGAGTGCCGCCGTGGGGGTCCCGGACGCCGCCCAGGAGTCCCCACGTCTGCCCTGGGGGCATGAGTCCAGCCCTGGGGGTCCCGGACGCCACCCAGGGAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118546 173 +  25972781 GCCTTGGGGGCTCGAGTCCAGCCCTGGGGGTCCCGGACACCGCCCGGGGGTCTCTACGTCTGCTCTGGAGCCTGGAGTGCCGCCGCGGGGGTCCCGGACGCCGCCTAGGAGTCCCCACGTCTGCCCTGGGGGCATGAGTCCAGCCCTAGGGGTCCCGGACGCCACCCAGGGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80090 173 -   1025902 GCCTTGGGGGCTCGAGTCCAGCCCTGGGGGTCCCGGACACCGCCCGGGGGTCTCTACGTCTGCTCTGGAGCCTGGAGTGCCGCCGTGGGGGTCCCGGACGCCGCCCCGGAGTCCCCACGTCTGGCCGGGGGGCATGAGTCCAGCCCTGGGGGTCCCGGACGCCACCCAGGGGG
i cerAty1.NW_012001098v1       N 0 C 0
s colAng1.NW_012115411v1          131940 173 +   1230721 GCCTTGGGGGTTCGAGTCCAGCCCTGGGGGGCCCGGACACCGCTCAGGGGTCTCTACGTCTGCTCTGGAGCCTGGAGTGCCGCCGTTGGGGTCCCGGACGCCGCCCAGGAGTCCCCACGTCTGCCCTGGGGGCATGAGTCCAGCTTTGGGGGTCCTGGACGCCACCCAGGGGG
i colAng1.NW_012115411v1       C 0 C 0
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=38951.000000
s hg38.chrX_KI270880v1_alt           250 31 +    284869 TCCCCATGTCTGCTTTGGGGGCTCGAGTCCA
s gorGor5.CYUI01015925v1           72967 31 +    417917 TCCCCACGTCTGCTTTGGGGGCTCGAGTCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171662069 30 - 171882078 -CCCCATGTCTGCTTTGGGGGCTCGAGTGCA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118719 30 +  25972781 -CCCCATGTCTGCTTTGGGGGCTCGAGTGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80263 30 -   1025902 -CCCCATCTCTGCTTTGGGGGCTCGAGTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          132113 30 +   1230721 -CCCCATGTCTGCTTTGGGGGCTCGAGTCCA
i colAng1.NW_012115411v1       C 0 I 1
e rheMac8.chrX                     72508  0 + 149150640 C
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=37886.000000
s hg38.chrX_KI270880v1_alt           281 46 +    284869 GCCATGGGGGTCCTGGACGCCGCCTTGGCGTCCCCGCGTCTGCCTT
s gorGor5.CYUI01015925v1           72998 46 +    417917 GCCCTGGGGGTCCTGGACGCCGCCTCGGCGTCCCCGCGTCTGCCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171662099 46 - 171882078 GCCCTGGGGGTCCCGGACGCCGCCCGGGGGTCCTCACGTCTGTCTT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118749 46 +  25972781 GCCCTGGGGGTCCCGGACGCCGCCCGGGGGTCCTCACGTCTGCCTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80293 46 -   1025902 GCCCTGGGGGTCCCGGACGCCGCCCGGGGGTCCTCACGTCTGCCTT
i cerAty1.NW_012001098v1       C 0 I 310
e colAng1.NW_012115411v1          132143  1 +   1230721 I
e rheMac8.chrX                     72508  0 + 149150640 C
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=22073.000000
s hg38.chrX_KI270880v1_alt           327 46 +    284869 GGGGGCCCGAGTCCCGCCCTGGGGGTCCTGGACGCCGCCTCGGCAT
s gorGor5.CYUI01015925v1           73044 44 +    417917 GGGGGCTCGAGTCC-GCCCTGGGGGTC-TGGACGCCGCCTCGGCGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171662145 46 - 171882078 GGAGACTGGCGTTCCCCCGTGGGAGTCCCAGACACCGCCCAGATGG
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          118795 46 +  25972781 GGAGACTGGCGTTCCCCCGTGGGAGTCCCAGACACCGCCCAGGTGG
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1           80649 46 -   1025902 GGGGGCTGGAATCCTGTCCTGGGGGTCCCGGACGCCACCCAGGGGG
i cerAty1.NW_012001098v1       I 310 C 0
e colAng1.NW_012115411v1          132143  1 +   1230721 I
e rheMac8.chrX                     72508  0 + 149150640 C
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=54365.000000
s hg38.chrX_KI270880v1_alt           373 52 +    284869 CCCCGCGTCTGCCTTGGGGGCTCGAGTCCCGCCCTGGGGGTCCCCGATGCCG
s gorGor5.CYUI01015925v1           73088 52 +    417917 CCCCGCGTCTGCCTTGGGGGCTCGAGTCTCGCCCTGGGGGTCCCCGATGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72508 52 + 149150640 CCCCATGTCTGCTTTGGGGGCTCGAGTGCAGCCCTGGGGGTCCCGGACGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171662193 52 - 171882078 CCCCACGTCTGCCTTGGGGGCTGGAGACCTGTTCTGGGGGTCCCGGACGCCG
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          118843 45 +  25972781 CCCCACGTCTGCCTTGGGGGCTGGAGACCTGCTCTGGGGGTCCCG-------
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1           80695 52 -   1025902 CCCCATGTCTGCTTTGGGGGCTCGAGTGCAGCCCTGGGGGTCCCGGACGCCG
i cerAty1.NW_012001098v1       C 0 C 0
e colAng1.NW_012115411v1          132143  1 +   1230721 I
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=53434.000000
s hg38.chrX_KI270880v1_alt           425 57 +    284869 CCCGGGGGTCCTCACGTCTACCTTGGAGACTGGAGTTCCCCCGTGGGAGTCTCGGAC
s gorGor5.CYUI01015925v1           73140 56 +    417917 CCTGGGGGTCCTCACGACTACCTTGGAGACTGGAGTTCCCCT-TGGGAGTCCCGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72560 57 + 149150640 CCCGGGGGTCCTCACGTCTGCCTTGGAGACTGGCGTTCCCCCGTGGGAGTCCCAGAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171662245 57 - 171882078 CCCAGGAGTCTCCATCTCTGCTCTGGGGGCTGGAGACCTGCTCTGGGGGTCCCGGAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118888  3 +  25972781 ------------------------------------------------------GAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80747 57 -   1025902 CCCGGGGGTCCTCACGTCTGCCTTGGAGACTGGCGTTCCCCCGTGGGAGTCCCGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          132144 57 +   1230721 CCCGGGGGTCCTCACGTCTGCCTTGGAGACTGGCGTTCCCCCGTGGGAGTCCCGGAC
i colAng1.NW_012115411v1       I 1 I 15
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=43153.000000
s hg38.chrX_KI270880v1_alt           482 49 +    284869 GCCACCCCG--GAGTCACCGTGTCTAGCCTTGGGGGCTTGAGTCCAGCCCT
s gorGor5.CYUI01015925v1           73196 49 +    417917 GCCACCCCG--GAGTCACCGCGTCTAGCCTTGGGGGCTTGAGTCCAGCCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72617 50 + 149150640 ACCGCCCAGGTGGGTCCCCACGTCT-GCCTTGGGGGCTGGAGACCTGCTCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171662302 48 - 171882078 GCCGCCCAG--GAGTCTCCATCTCT-GCTCTGGGGGCTGGAGACCTGCTCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118891 48 +  25972781 GCCGCCCAG--GAGTCCCCACCTCT-GTTCTGGGGGCTGGAGACCTGCTCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80804 50 -   1025902 ACCGCCCAGGTGGGTCCCCACGTCT-GCCTTGGGGGCTTGAGTCCAGCTCT
i cerAty1.NW_012001098v1       C 0 C 0
e colAng1.NW_012115411v1          132201 15 +   1230721 I
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=34993.000000
s hg38.chrX_KI270880v1_alt           531 26 +    284869 GGGGGTCC-------------------------------------------------------------CGGACGTCGCCGAGGAGC
s gorGor5.CYUI01015925v1           73245 87 +    417917 GGGGGTCCCGGACGTCCCCGAGGAGCCCCCACGTCTGCCTTTGGGGCTTGAGTCCAGCCCTGGGGGTCCCGGACGTCGCCGAGGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72667 26 + 149150640 GGGGGTCC-------------------------------------------------------------CGGACGCCGCCCAGGAGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171662350 26 - 171882078 GGGGGTCC-------------------------------------------------------------CGGACGCCGCCCAGGAGT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          118939 26 +  25972781 GGGGGTCC-------------------------------------------------------------CGGACGCCGCCTAGGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           80854 26 -   1025902 GGGGGTCC-------------------------------------------------------------CGGACGCCGCCCAGGAGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         62354 26 -    811265 GGGGGTCC-------------------------------------------------------------CGGACGCCGCCCAGGAGT
i chlSab2.chrUn_KE147541v1     N 0 C 0
e colAng1.NW_012115411v1          132201 15 +   1230721 I
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=80797.000000
s hg38.chrX_KI270880v1_alt           557 40 +    284869 CCCCACGTCTGCCTTTGGGGCTTGAGACCTGCTCT-GGGGG
s gorGor5.CYUI01015925v1           73332 40 +    417917 CCCCACGTCTGCCTTTGGGGCTTGAGACCTGCTCT-GGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72693 40 + 149150640 CCCCACCTCTGCTCTGGGGGCTGGAGACCTGCTCT-GGGGG
i rheMac8.chrX                 C 0 I 123
s macFas5.chr7                 171662376 39 - 171882078 CCCCACTTCTGCTCT-GGGGCTGGAGACCTGCTCT-GGGGG
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          118965 40 +  25972781 CCCCACCTCTGCTCT-GGGGCTGGAGACCTGCTCTGGGGGG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           80880 40 -   1025902 CCCCACCTCTGCTCTGGGGGCCGGAGACCTGCTCT-GGGGG
i cerAty1.NW_012001098v1       C 0 I 61
s chlSab2.chrUn_KE147541v1         62380 40 -    811265 CCTCACCTCTGCTCTGGGGGCTGGAGACCTGCTCT-GGGGG
i chlSab2.chrUn_KE147541v1     C 0 I 1
s colAng1.NW_012115411v1          132216 40 +   1230721 CCCCACGTCTGCCTTGGGGGCTTGAGTGCAGCTCT-GGGGG
i colAng1.NW_012115411v1       I 15 C 0
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=141810.000000
s hg38.chrX_KI270880v1_alt           597 73 +    284869 TCCCGGTCGCCGCCCAGGTGGGTCCCCACGTCTAGCCTTGGGGGCTTGAGTCCAGCCCTGGGGGGCCCGGATG
s gorGor5.CYUI01015925v1           73372 73 +    417917 TCCCGGACGCCGCCCAGGTGGGTCCCGACGTCTAGCTTTGGGGGCTTGAGTCCAGCCCTGTGGGTCCCCGGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72856 65 + 149150640 TCCCGGGCGCCGCCCAGGTGGGTCCCCTCGTCT-GCCTTGGGGGCTTGAGTCCAGCCCTGGGGGTC-------
i rheMac8.chrX                 I 123 C 0
s macFas5.chr7                 171662416 65 - 171882078 TCCCGGACGCCGCCCAGGTGGGTCCCCTCGTCT-GCCTTGGGGGCTTGAGTCCAGCCCTGGGGGTC-------
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          119006 65 +  25972781 TCCCGGGCGCCGCCCAGGTGGGTCCCCTCGTCT-GCCTTGGGGGCTTGAGTCCAGCCCTGGGGGTC-------
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1           80981 72 -   1025902 TCCCGGACGCCGCCCAGGTGGGTCCCCTCATCT-GCCTTGGGGACTTGGGTCCAGCCCTGGGGGTCCCGGATG
i cerAty1.NW_012001098v1       I 61 C 0
s chlSab2.chrUn_KE147541v1         62421 72 -    811265 TCCCGGACGCCACCCAGGTGGGTCCCCTCGTCT-GCCTTGGGGGCTTGAGTCCAGCTCTGGGGGTCCCGGATG
i chlSab2.chrUn_KE147541v1     I 1 C 0
s colAng1.NW_012115411v1          132256 70 +   1230721 TCCCGGACGTCGCCCAG--GAATCCCCACCTCT-GCTCTGGGGGCTTGAGTCCAGCCCTGGGGGTCCCGGACA
i colAng1.NW_012115411v1       C 0 C 0
e panPan2.chrUn_NW_014024225v1     37706 794 +    105888 M

a score=2224586.000000
s hg38.chrX_KI270880v1_alt           670 865 +    284869 CCGCCCGGGGGTT-CTCCTCGTCT-GCCTTGGGGG-TTGGGTCCAGCCCCAGGCGTCCTGACC-ACCGCCCAG--GGGCCCCCACGTCTG-CCTGGGGGCCTCAAATTCAGTCCTGGGGGTCCCGGACGCCTCCCAGGGGTCTTCATGTCTGCCGTGGGCCTCGAGTCCAGCCGTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTCCTGAAGTCAGCTTTGGGGGTTCGAACCCATCCATCCCAGGGGTCCCTGAGTCTACATTAGGGGCTGGAGTCCAGCCTTGAGGGTCTCCACTGCTGCCTTGGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTCGGGAGCCCCTGCGGTGGAGCTCTGAGTGGGGCAGGGGCCTGGGAGATGCCAGGAGGATGAGAGCGGCGCCCCCCT-GGTCCAGGGGACAGTAAGAGGCAGCCGGTCTCAGAGAAGCTACCCCA-AAACTGTTACCCGTGGTGTGCAGAGCGTCCTGCAACCCCAGCCCTCACCAGGATTTCTTGCGTTTTTCAGGAAATCGGTTGTGATTGGCATGTTCCTTAAGCGTCTGCAGGAAGCCGAGGCCTTTTTGGTATTTCAGGAGGGGTTGCTAA--CCCCCCTCCTTGTAGGATCGGGGTATCCCAGCTGCTAATTCCCCTCCTAACAGCCCTGCAGCGCCTGGATTGGAGGTGTGACAGGTGGCATTTTTGGCCCGAAGTCCCTAGGCAGGACGGGTGGCTGTAGCCTGCGCGTTTGTGTAAATTAACCTCCCTTTTTAGTTCTGTGAAGGGAGAACGTGATTAGTTTAAAATCACCTGCGTGAAAGA------------------------------------GGCTCTTGATTAGTTT-AAAATCAC-C
s panPan2.chrUn_NW_014024225v1     38500 902 +    105888 CCGCCCGGGGGTT-CTCCTCGTCT-GCCTTGGGGG-TTGGGTCCAGCCCCAGGCGTCCTGACCGACCGCCCAG--GGGCCCCCACATCTG-CCTGGGGGCCTCAAATCCAGTTCTGGGGGTCCCGGACGCCTCCCAGGGGTCTTCATGTCTGCCGTGGGCCTCGAGTCCAGCCGTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTCCTGAAGTCAGCTTTGGGGGTTCGAACCCATCCATCCCAGGGGTCCCTGAGTCTACATTAGGGGCTGGAGTCCAGCCTTGAGGGTCTCCACTGCTGCCTTGGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTCGGGAGCCCCCGCGGTGGAGCTCTGAGTGGGGCAGGGGGCTGGGAGATGCCAGGAGGATGAGAGCGGCGCCCCCCT-GGTCCAGGGGACAGTAAGAGGCAGCCGGTCTCAGAGAAGCTCCCCCA-AAACTGTTACCCGTGGTGTGCAGAGCGTCCTGCAACCCCAGCCCTCACCAGGATTTCTTGCGTTTTTCAGGAAATCGGTTGTGATTGGCATGTTCCTTAAGCGTCTGCAGGAAGCCGTGGCCTTTTTGATATTTCAGGAGGGGTTGCTAA--CCCCCCTCCTTGTAGGATCGGGGTATCCCAGCTGCTGATTCCCCTCCTAACAGCCCTGCAGCGCCTGGATTGGAGGTGTGACAGGTGGCATTTTTGGCCCTAAGTCCCTACGCAGGACGGGTGGCTGTAGCCTGCGCGTTTGTGTAAATTAACCTCCCTTTTTAGTTCTGTGAAGGGAGAACGTGATTAGTTTAAAATCACCTGCGTGAAAGACGCTCTTGATTAGTTTAAAATCACCCACGTGAAAGGGGCTCTTGATTAGCTT-AAAATCAC-C
i panPan2.chrUn_NW_014024225v1 M 794 C 0
s gorGor5.CYUI01015925v1           73445 829 +    417917 CCTCCCGGGGGTT-CTCCTCGTCT-GCCTTGGGAG-TTGGGTCCAGCCCCAGGCGTCCTGACC-ACCGCCCAG--GGGCCCCCAAGTCTG-CCTGGGGGCCTCAAATCCAGTCCTGGGGGTCCCGGACGCCTCCCAGGGGTCCTCATATCTGCCGTGGGCCTCCAGTCCAGCCGTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTCCTGAAGTCAGCTTTGGGGGTTCGAACCCATCCATCCCAGGGGTCCCTGAGTCTACATTAGGGGCTGGAGTCCAGCCTTGAGGGTCTCCACTGCTGCCTTGGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTCGGGAGCCCCTGCGGTGGAGCTCTTAGTGGGGCAGGGGCCTGGGAGATGCCAGGAGGATGAGAGCGGCGCCCCCCT-GGTCCAGGGGACAGTAAGAGGCAGCCGGTCTCAGAGAAGCTCCCCAC-AAACTGTTACCCGTGGTGTGCAGAGCGTCCTGCAACCCCAGCCCTCACCAGGATTTCTTGCGTTTTTCAGGAAATCGGTTGTGATTGGCATGTTCCTTAAGCGTCTGCAGGAAGCCGTGGCCTTTTTGGTATTTCAGGAGGGGTTGCTAA--CCCCCCTCCTTGTAGGATCGGGGTATCCCAGCTGCTAATTCCCCTCCTAACAGCCCTGCAGCGCCTGGATTGGAGGTGTGACAGGTAGCATTTTCGGCCCGAAGTCCCTAGGCAGGACAGGTGGCTGTAGCCTGCGCGTTCGTGTAAATTAACCTCCCTTTTTAGTTCTGTGAAGGGAGAACGCGATTAGT------------------------------------------------------------------------TT-AAAATCAC-C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     72921 810 + 149150640 --------------CCCCACATCTAGCCTTGGGGGCTTGGGTCCAGCCCCAGGCGTCCTGGAC-ACCGCCCAG--GAGTCCCCACGTCTG-GCTGGGGGGCTGGAATCCTGTCCTGGGGGTCCCGGACGCCTCCCAGGGGTCCCCATGTCTGCCTTGGGCCTCGAGTCCAGCCGTGAGGGTTCCGAATGCTGCCTTGGAGGGTGGAGGTCCAGCTCTGAGGGTCCTGAAGTCTGCTTTGGGGCCTCGA----GTCCATCCCAGGGGTCTCGGAGTCTACACT-----------------------------------------GGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTGGGGAGCCCCTGCGGTGGAGCTGTGAGTGCGGCAGGGGCCTGGGAGATGCCAGGAGGATGCGAGCGGCGCCCCCCTGGGTCCAGGGGACGGTAAGAGTCAGCCGGTCCCAGAGAAGCTCCCCCACAAACTGTGACCTGTGGTGTGCAAAGCGTCCCGGAACCCCAGCCCTCACCAGCAGTGCTTGCATTTTTCAGGAGATCAGTTGCATTTGGCATGTTCCTTAAGCGTCTGCAGGAAGCTGTG---GCCTTGGGATTTCAGGAGGGTTTGCTAAA-CCCCCCTCATTGTAGGATGGGGGTATCCCAGCTGCTAATTCCCTTCCTAACAGCCCTGCAGGGCTTGGATTAACGGTGCGAGAGGTGACATTTTCAGCCCGAAGTCCCTAGGAAGGACAGGTGGCTGTAGCCTGCGCATTTGTGTAAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCGTTTAAAGTCACCTGCGTGAAAGG------------------------------------GGCCCTTGATTAGCTTGAAAATCAC--
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171662481 791 - 171882078 --------------CCCCACATCTAGCCTTGGGGGCTTGGGTCCAGCCCCAGGCGTCCTGGAC-ACCGCCCAG--GAGTCCCCACGTCTA-CCTGGGGGGCTGGAATCCTGTCCTGGGGGTCCCGGACGCCTCCCAGGGGTCCCCATGTCTGCCTTGGGCCTTGAGTCCAGCCCTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTCCTGAAGTCTGCTTTGGGGCCTCGA----GTCCATCCCAGGGGTCTCGGAGTCTACAAT-----------------------------------------GGGGGCCTGGATGGGATCCAGCGGGTCTGGGTCCAGCCTGGGGAGCCCCTGCGGTGGAGCTGTGAGTGCGGCAGGGGCCTGGGAGATGCCAGGAGGATGCGAGCGGCGCCCCC------------------AAGAGTCAGCCGGTCCCAGAGAAGCTCCCCCACAAACTGTGACCTGTGGTGTGCAAAGCGTCCCGGAACCCCAGCCCTCACCAGCAGTGCTTGCATTTTTCAGGAGATCAGTTGCATTTGGCATGTTCCTTAAGCGTCTGCAGGAAGCTGTG---GCCTTGGGATTTCAGGAGGGTTTGCTAAA-CCCCCCTCATTGTAGGATGGGGGTATCCCAGCTGCTAATTCCCTTCCTAACAGCCCTGCAGGGCTTGGATTAACGGTGCGAGAGGTGACATTTTCAGCCCGAAGTCCCTAGGAAGGACAGGTGGCTGTAGCCTGCGCATTTGTGTAAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCATTTAAAGTCACCTGCGTGAAAGG------------------------------------GGCCCTTGATTAGCTTAAAAATCAC--
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          119071 809 +  25972781 --------------CCCCACATCTAGCCTTGGGGGCTTGGGTCCAGCCCCAGGCGTCCTGGAC-ACCGCCCAG--GAGTCCCCACGTCTA-CCTGGGGGGCTGGAATCCTGTCCTGGGGGTCCCGGACGCCTCCCAAGGGTCCCTATGTCTGCCTTGGGCCTTGAGTCCAGCCCTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTCCTGAAGTCTGCTTTGGGGCCTCGA----GTCCATCCCAGGAGCCTCTGAGTCTACACT------------------------------------------GGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTGGGGAGCCCCTGCGGTGGAGCTGTGAGTGCGGCAGGGGCCTGGGAGATGCCAGGAGGATGCGAGCGGCGCCCCCCTGGGTCCAGGGGACGGTAAGAGTCAGCCGGTCCCAGAGAAGCTCCCCCACAAACTGTGACCTGTGGTGTGCAAAGCGTCCCGGAACCCCAGCCCTCACCAGCAGTGCTTGCATTTTTCAGGAGATCAGTTGCATTTGGCATGTTCCTTAAGCGTCTGCAGGAAGCTGTG---GCCTTGGGATTTCAGGAGGGTTTGCTAAACCCCCCCTCATTGAAGGATCGAGGTATCCCAGCTGCTAATTCCCTTCCTAACAGCCCTGCAGGACCTGGATTAACGGTGCGAGAGGTGACATTTTCAACCCGAAGTCCCTAGGAAGGACAGGTGGCTGTAGCCTGCGCATTTGTGTAAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCGTTTAAAGTCACCTGCGTGAAAGG------------------------------------GGCCCTTGATTAGCTTGAAAATCAC--
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           81053 801 -   1025902 CCGCCCAGGGGGTTCCCCTCGTCT-GCCTTGGGGGCTTGGGTCCAGCCCCAGGTGTCCTGAAC-ACCGCCCAG--GAGTCTCCACGTCTG-GCTGGGGGGCTCGAATCCTGTTCTGG--------------------GGGTCCCCATGTCTGCCTTGGGCCTCGATTCCATCCGTGAGGGTCCCGAATGCTGCCTCGGAGGGTGGA-GTCCACCTCTGAGGGTCCTGCAGTCTGCTTTGGGGCCTCGA----GTCCATCCCAGGGGCCTCTGAGTCTACACT-----------------------------------------GGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTCGGGAGCCCCGGCGGAGGAGCTGTGAGTGGGGCAGGGGCCTGGGAGATGCCAGGAAGACGCGAGCGGCGCCCCCCTGGGTCCAGGGGACGGTAAGAGGCAGCCGGTCCCAGAGAAGCTCCCCCCCAAACTGTGACCCGTGGTGTGCAAAGCGTCCCGGAACCGCAGCCCTCACCAGCAGTTTTTGCATTTTTCAGGAGAT-AGTCGCATTTGGCATGTTCC-TAAGCGTCTGCAGGAAGCTGTGGCCGCCTTGCTATTTCAGGAGGGTTTGCTAA--CCCCCCTCATTGTAGGATGGGGGTATCCCAGCTGCTAATTATCTTCCTAACAACCCTGCAGGGCCTGGATTAACGGTATGAGAGGTGACATTTTTAGCCCGAAGTCCCTAGGAAGGACAGGTGGCTGTAGCCTGTGCATTTGTGTAAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCGTTTAAAGTCACCTGCGTGAAAGG------------------------------------AGCCCTTGATTAGCTT-AAAATCAC--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         62493 823 -    811265 CCGTCCAGGGGGA-CCCCACATCTAGCCTTAAGGACTTGGGTCCAGCCCCAGGCGTCCTGGAC-ACCGCCCAG--GAGTCTCCACGTCTA-CCCGGGGGTCTGGAATCCTGTCCTGGGGGTCCCGGACGCCTCCCAGGGGTCCCCATG-CTGCCTTGGGCCTCGAGTCCAGCCGTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGCCCTGAAGTCTGCTCTGGGGCCTCGA----GTCCATCCCAGGGGTCCCTGAGTCTACACT-----------------------------------------GGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCCAGCCTCGGGAGCCCCTGCGGTGGAGCTGTGAGTGGGGCAGGGGCCTGGGAGATGCCAGGAAGATGCGAGCGGCGCCCCCCTGGGTCCAGGGGACGGTAAGAGGCAGCCGGTCCCAGAGAAGCTCCCCCACAAACTGTGACCCGTGGTGTGCAAAGCGTCTCGGAACCCCAGCCCTCACCAGCAGTTCTTGCATTTTTCAGGAGATCAGTCGCATTTGGCATGTTCCTTAAGCGTCTGCAGGAAGTTGTGGCCGCCTTGGTATTTCAGGAGGGTTTGCTAAA-CCCCCCTCATTGTAGGATCGGGGTATCCCAGCTGCTAATTATCTTCCTAACAACCCTGCAGGTCCTGGATTAACAGTTCGAGAGGTGACATTTTCAGCCCGAAGTCCCTAGGAAGGACAGGTGGCTGTAGCCTGCGCATTTGTGTCAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCGTTTAAAGTCACGTGCGTGAAAGG------------------------------------GGCCCTTGATTAGCTT-AAAATCAC--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          132326 824 +   1230721 ATGCCCGGGGGGT-CCTCACGTCT-GCCTTGGGAGCTTGAGTCCAGCTCTGGGGGTCCCGGAC-GCTGCCCAGTTGGGTCCCCACATCTAGCCTGGGGGGCTCGAATTCTGTTTTGGGGGTCCCGGACGCCTCCCAGGGGTCCCCATGTCTGCCTTGGGCCTCGAGTCCAGCCGTGAGGGTCCCGAATGCTGCCTTGGAGGGTGGA-GTCCAGCTCTGAGGGTTCTGAAGTCTGCTTTGGGGCCTCGA----GTCCATCCCAGGGGTCTCAGAGTCTACACT-----------------------------------------GGGGGCCTGGATGGGATCCAGCGGGTCTGAGTCTAGCCTCGGGAGCCCCTGCGGAGGAGCTGTGAGTGGGGCAGGGGCCTAGGAGATGCCAGGAAGATGCGAGCGGCGCCCCCCTGGGTCCAGGGGACGGTAAGAGGCAGCTGGTCCTAGAGAAGCTCCCCCACAAACTGTGACCCGTGGTGTGCAAAGCGTCCCGCAACCCCAACCCTCACCAGCAGTTCTTGCATTTTTC---AGATCAGTTGCATTTGGCATGTTCCTTAAGCGTCTGCAGGAAGCCGTGGCCTTCTTGGTATTTCAGGAGGGTTTGCTAAT-CCCCCCTCATTGTAGGATCGGGGTATCCCAGCTGTTAATTCCCTTCCTAACAGCCCTGCAGGGCCTGGATTGACGGTGTGAGAGGTGACATTTTCAGCCCGAAGTCCTTAGGGAGGACAGGTGGCTGTAGCCTGCGCATTTGTGTAAATTAACCTCCCCTTTTAGTTCTGTGAAAGGAGAACTCGATTCCTTTAAAGTCACCTGCGTGAAAGG------------------------------------GGCCCTTGATGAGCTT-AAAATCACC-
i colAng1.NW_012115411v1       C 0 I 22

a score=36124.000000
s hg38.chrX_KI270880v1_alt          1535 51 +    284869 CACGTGAAAGGGGCTCTTGATTAGCTTAAAATCACCTGGGTGTTTCGTTTT
s panPan2.chrUn_NW_014024225v1     39402 51 +    105888 CACGTGAAAGGGGCTCTTGATTAGCTTAAAATCACCTGGGTGTTTCGTTTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           74274 51 +    417917 CACGTGAAAGGGGCTCTTGATTAGCTTAAAGTCACCTGGGTGTTTCGTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     73731 23 + 149150640 ---------------CTGAATTAGCTTAAAATCGTGTG-------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171663272 23 - 171882078 ---------------CTGAATTAGCTTAAAATCGTGTG-------------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          119880 23 +  25972781 ---------------CTGAATTAGCTTAAAATCGTGTG-------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           81854 23 -   1025902 ---------------CTGAATTAGCTTAAAATCGTGTG-------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         63316 23 -    811265 ---------------CTGAATTGGCTTAAAATCGTGTG-------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133150 22 +   1230721 I

a score=689020.000000
s hg38.chrX_KI270880v1_alt          1586 250 +    284869 ATCTCAGTTGGCCTCTGAATG--TTTAT--CCTA-CAGCTTCCTGCAAGCTCCAGTCTACCTTCTAA--GGGAATAACGGGGCTCGTCTTTCTACGTTACTTTATGTGGGAGTAGTTGTAAAACAGAATGAGGGAGACCGCGGGGATTGTGCGGAAATGTAGCCACCGTTTAcatctcg----ggaggctgaggtgggaggatcgcttgagcccaggagtttgacaccagcctgggcaacatggtaagaccccttctctac
s panPan2.chrUn_NW_014024225v1     39453 250 +    105888 ATCTCAGTTGGCCTCTGAATG--TTTAT--CCTA-CAGCGTCCTGCAAGCTCCAGTCTACCTTCTAA--GGGAATAACGGGGCTCGCCTTTCTACGTTACTTTATGTGGGAGTAGTTGTAAAACAGAATGGGGGAGACCGCGGGGATTGTGCAGCAATGTAGCCACCGTTTACATGtcg----ggaggctgaggtgggaagatcgcttgagcccaggagtttgataccagcctgggcaacatggtaagaccccttctctac
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           74325 252 +    417917 CTCTCAGTTGGCCTCTGAATGTTTTTAT--CCTA-CAGCTTCCTGCAAGCTCCAGTCTACCTTCTAA--GGGAATAACGGGGCTCGCCTTTCTACGTTACTTTACGTGGGAGTAGTTGTAAAACAGAATGGGAGAGAACGCGGGGATTGTGCAATAATGTAGCCACCGTTTgcatgttg----ggaggctgaggtgggaggatcgcttgagcccaggagtttgacaccagcctgggcaacatggtaagaccccttctgtac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     73754 259 + 149150640 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCCGCGTCCTGCAAGCTCCAGGCTACGTTTTAAGGGGGAATAACGGGGCTCGCCTCTCTGCGTTACTTTATGTGACCGTAGTTGTAAAACAGAATGAGGGAGACAGTGGGGACTGGGCAGAAGTGTCACCCCCATTTATGCGTTGGGAAggaggctgaggtgggaggattgcttgagcccaggagtttgataccagcatgggcaacatggtaaggccccttatctac
i rheMac8.chrX                 C 0 I 642
s macFas5.chr7                 171663295 259 - 171882078 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCCGCGTCCTGCAAGCTCCAGGCTACGTTTTAAGGGGGAATAACGGGGCTCGCCTCTCTGCGTTACTTTATGTGACCGTAGTTGTAAAACAGAATGAGGGAGACAGTGGGGACTGGGCAGAAGTGTCACCCCCATTTATGCGTTGGGAAggaggctgaggtgggaggattgcttgagcccaggagtttgataccagcatgggcaacatggtaaggccccttatctac
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          119903 259 +  25972781 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCCGCGTCCTGCAAGCTCCAGGCTACGTTTTAAGGGGGAATAACGGGGCTCGCCTCTCTGCGTTACTTTATGTGACCGTAGTTGTAAAACAGAATGAGGGAGACAGTGGGGACTGGGCAGAAGTGTCACCCCCATTTATGCGTTGGGAAggaggctgaggtggaaggattgcttgagcccaggagtttgataccagcatgggcaacatggtaaggccccttacctac
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           81877 259 -   1025902 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCCGCTTCCTGCAAGCTCCAGGCTACGTTTTAAGGGGGAATAACGGGGCTCGCCTTTCTGTGTTACTTTATGTGACCGTAGTTGTAAAACAGAATGAGGGAGACAGCGGGGACTGTGCAGACGTGTCACCCCCATTTATGCGTTGGGAAggaggctgaggtgggaggattgcttgagcccaggagtttgatacctgcatgggcaacatggtaagaccccttatctac
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         63339 258 -    811265 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCATCTTCCTGCAAGCTCCAGGCTACGTTTTAA-GGGGAGTAACGGGGCTCGCCTTTCTGCGTTACTTGATGTGACCGTAGTTGTAAAAGAGAATGAGGGAGACAGCGGGGACTGTGCAGAAGTGTCACCCCCATTTATGCCTTGGGAAggaggctgaggtgggaggattgcttgagcccaggagtttgatacctgcataggcaacatggtaagaccccttatctac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          133172 256 +   1230721 ATCTCAATTGGCCTCTGAATC--TTTACCACCTGCCAGGTTCCTGCAAGCTCCAGGCTACGTTTTAA-GGGGAATAACGGGGCTCGCCTTTCTGCGTTACTTTATGTGACTGTAGTTGTAAAGCAGAATGGGGGAGACAGCGGGGACTGTGCAGAAATGTCGCCCCCATTTATGCCTTGGGAAggaggccgaggtgggaggattgcttgagcccagaagtttgataccagcatgggcaacatggtaagaccctgtatct--
i colAng1.NW_012115411v1       I 22 C 0

a score=153768.000000
s hg38.chrX_KI270880v1_alt          1836 86 +    284869 cc-tccccccc---------------aaaaaaaaaattttagtgtggcatggtggtgggtgcctgtggtcccagctactcgggacgctgaggtgggaggatt
s panPan2.chrUn_NW_014024225v1     39703 85 +    105888 cc--ccccccc---------------aaaaaaaaaactttagtctggcgtggtggtcggtgcctgtggtcccagccactcgggacgcagaggtgggaagatT
i panPan2.chrUn_NW_014024225v1 C 0 M 1838
s gorGor5.CYUI01015925v1           74577 87 +    417917 ccccccccccc---------------aaaaaaaaaattttagctgggcgtggtggtgggtgcctgtggtcccagctacttgggacgctgaggtgggaggatt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171663554 91 - 171882078 -----------aaaaaaaaaaaagaaaaaaaagaaaaattagccaggcgtggtggtgggtgcctgtggtcccggctactcgggaggctgaggtgggaggatc
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120162 87 +  25972781 ---------------aaaaaaaagaaaaaaaagaaaaattagccaggcgtggtggtgggtgcctgtggtcccggctactcgggaggctgaggtcggaggatc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82136 87 -   1025902 ---------------aaaaaaaaaaaaaaaaagaaaaattagccaggcgtggtggtgggtgcctgtggtcccggctacttgggaggctgaggtgggaggatc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         63597 83 -    811265 -------------------aaaaaaaaaaaaagaaaaattagccaggcgtggtggtgggtgcctgtgggcccagctactcgggaggctgaggtgggaggatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          133428 87 +   1230721 ---------------ccaaaaaaaaaaaaagaaaaaagttagccaggcatggtggtgggtgcctgtggtcccggctactcgggaggctgaggtgggaggatc
i colAng1.NW_012115411v1       C 0 C 0
e rheMac8.chrX                     74013 642 + 149150640 I

a score=27805.000000
s hg38.chrX_KI270880v1_alt          1922 15 +    284869 gcttgagcccaggag
s gorGor5.CYUI01015925v1           74664 15 +    417917 gcttgagcccaggag
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171663645 15 - 171882078 acttgagcccaggag
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120249 15 +  25972781 acttgagcccaggag
i macNem1.NW_012017243v1       C 0 I 537
s cerAty1.NW_012001098v1           82223 15 -   1025902 acttgagcccaggag
i cerAty1.NW_012001098v1       C 0 I 518
s chlSab2.chrUn_KE147541v1         63680 15 -    811265 acttgagcccaggag
i chlSab2.chrUn_KE147541v1     C 0 I 540
s colAng1.NW_012115411v1          133515 15 +   1230721 acttgaggccaggag
i colAng1.NW_012115411v1       C 0 M 4693
e rheMac8.chrX                     74013 642 + 149150640 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=3675.000000
s hg38.chrX_KI270880v1_alt          1937 34 +    284869 -------------------------------tttgacaccagcatgggcaatatgg-taagacccc
s gorGor5.CYUI01015925v1           74679 34 +    417917 -------------------------------tttgacaccagcctgggcaacatgg-taagacccc
i gorGor5.CYUI01015925v1       C 0 I 29
s macFas5.chr7                 171663660 66 - 171882078 gtggaggctgcggtgagctcagattgcagcactgcactccagcctgggtgacagagttaagacccc
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=-589.000000
s hg38.chrX_KI270880v1_alt          1971 38 +    284869 attatctacaaaaaaaaaaaaaaaaaaaagaaaagaaa
s macFas5.chr7                 171663726 34 - 171882078 a-catct-caaacaagaaGCACCAAAAGGTGTCTGA--
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e gorGor5.CYUI01015925v1           74713 29 +    417917 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=18271.000000
s hg38.chrX_KI270880v1_alt          2009 129 +    284869 aATTAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggagg-attgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaa
s gorGor5.CYUI01015925v1           74742 129 +    417917 ttttagtctggcgtggtggtcggtgcctgtggtcccagctactcgggacgctgaggtgggaggaattgcttgagcccaggagtttgacaccagcatgggcaacatggtaagaacctg-tatctccaaaaa
i gorGor5.CYUI01015925v1       I 29 I 28
s macFas5.chr7                 171663760 124 - 171882078 ----ggtcaggcacggtggctcaagcctgtaattccagcactttgggaggccgaggtgggtgg-atcacctgaggtcaggagttcgagacctgcctgagcaacacagagaaataccg-actctactaaat
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=1122.000000
s hg38.chrX_KI270880v1_alt          2138 38 +    284869 aaaaaaaaaaaagaaaagccgggcgtggtggtgggtgc
s macFas5.chr7                 171663884 33 - 171882078 atgcaaaa-----attagctgggtgtggtggcaggtgc
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e gorGor5.CYUI01015925v1           74871 28 +    417917 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt          2176 2694 +    284869 ctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaagaaaAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaAGAAAGAAAAGAAAAATTAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaagaaaagaaaagaaaaattagccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaagaaAAgccgggcgtggtggtgggtacctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaagccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccctattatctacaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaaTTAgcctggtgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccctattatctacaaaaaaaaaaaaaaAAAAAAAAAGAAAGAAAAATTAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaaagaaaagccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccctattatctacaaaaaaaaaaaaaaaaaaaaAAAGAAAGAAAAATTAgcctggtgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaAAAAGAAAAGAAAAATTAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaaagaaaagccgggcgtggtggtgggttcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccctattatctacaaaaaaaaaaaaaaaaaaaaAAAGAAAGAAAAATTAgcctggtgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccctattatctccaaaaaaaaaaaaaaaaaaaaaagaaagaaaaattagcctggtgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacgccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaaagaAAAAAATTAgccgggcgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattgcttgagcccaggagtttgacaccagcatgggcaatatggtaagaccccattatctacaaaaaaaaaaaaaaaaaaaaaagaaagaaaaattagcctggtgtggtggtgggtgcctgtggtcccagctgctcgggacgctgaggtgggaggattacctgagcccaggaggtggaggctgcagtgagcttagattgcagcactgtgctccagcctgggtgacagagtgagaccccatctcaaacaagaaGCACCAAAAGGTGTCTGAGATcaggcacggtggctcacgcctgtcattccagcactttgggaggccgaggtgggtggatcacctgaggtcaggcatttgagaccagcctggccaacatggagaaacactgactctactaaatgtgcaaaaattagccgggcgtggtggcacacacctgtagtcccagctactccagaggctgaggtaggagaattgcttgaacctgggaggtggaggttgcagtgagctgagattgtaccactgcactccagcctgggccataaagcgagaGCTTGACGGTGGGGTGGGGGTGTGGGATGGACCTT
e chlSab2.chrUn_KE147541v1         63695  540 -    811265 I
e cerAty1.NW_012001098v1           82238  518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013  642 + 149150640 I
e macNem1.NW_012017243v1          120264  537 +  25972781 I
e macFas5.chr7                 171663917    0 - 171882078 C
e gorGor5.CYUI01015925v1           74871   28 +    417917 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=191.000000
s hg38.chrX_KI270880v1_alt          4870 2 +    284869 ct
s macFas5.chr7                 171663917 2 - 171882078 ct
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e gorGor5.CYUI01015925v1           74871 28 +    417917 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=13999.000000
s hg38.chrX_KI270880v1_alt          4872  83 +    284869 gtggtcccagctactcgggaggctgaggtgggaggatcg-cttgagcccaggagtttg-------------------------------acaccagcatgggcaacatggtaaga
s gorGor5.CYUI01015925v1           74899  84 +    417917 gtggtcccagctactcgggaggctgaggtgggaggattggcttgagcccgggagtttg-------------------------------acaccagcatgggcaacatggtaaga
i gorGor5.CYUI01015925v1       I 28 C 0
s macFas5.chr7                 171663919 114 - 171882078 gtagtcccagctacccccgaggctgaggtaggagaatcg-cttgaacgtgggaggtggaggttgccgtgagctgagatcgcgccactgcactccagcctgggcgacagagcgaga
i macFas5.chr7                 C 0 I 70
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=2880.000000
s hg38.chrX_KI270880v1_alt          4955 47 +    284869 a-cccatatctacaaaaaaaaaatttaaaa--attagccgggtgtggtgt
s gorGor5.CYUI01015925v1           74983 50 +    417917 aacccatatctacaaaaaaaaaaaaaaaaagaaTTAGCCGGGTGTGGTGT
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e macFas5.chr7                 171664033 70 - 171882078 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=15812.000000
s hg38.chrX_KI270880v1_alt          5002 106 +    284869 gtgggtgcctgtggtcccagctacACCACGAGTGGAATTGTGACGTGCACAGCCTGGGTAAATGGGGTTAGCTATATTCACCCTTAAG-GGGGCACATACCCTATTA
s gorGor5.CYUI01015925v1           75033 106 +    417917 GTGGGTGCCTGTGGTCCCAGCTACACCATGAGTGGAATTGTGACGTGCACAGCCTGGGTAAATGGGGTTAGCTATATTCAGCCTTAAG-GGGGCACATACCCTATTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171664103  92 - 171882078 GTGGGGGCCT---------------CGGCAGGTGGAATCGTGATGTGCCCGGATGCGGTAAATAGGGTTTGCTGTATGTGGCCCCAAGCGGGGGACGTAGACTATTG
i macFas5.chr7                 I 70 I 1
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e cerAty1.NW_012001098v1           82238 518 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74013 642 + 149150640 I
e macNem1.NW_012017243v1          120264 537 +  25972781 I
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=7223.000000
s hg38.chrX_KI270880v1_alt          5108 6 +    284869 TTTCTA
s gorGor5.CYUI01015925v1           75139 6 +    417917 TTTCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     74655 6 + 149150640 TTTTTA
i rheMac8.chrX                 I 642 C 0
s macFas5.chr7                 171664196 6 - 171882078 TTTTTA
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          120801 6 +  25972781 TTTTTA
i macNem1.NW_012017243v1       I 537 C 0
s cerAty1.NW_012001098v1           82756 6 -   1025902 TTTTTA
i cerAty1.NW_012001098v1       I 518 C 0
e chlSab2.chrUn_KE147541v1         63695 540 -    811265 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=128148.000000
s hg38.chrX_KI270880v1_alt          5114 71 +    284869 ACACCACTGAACTCAGAATCGGGACCCAGATTCGCCGGGGCAGCGCGGGACGGAGGCCTCTCCCGGGCTCC
s gorGor5.CYUI01015925v1           75145 71 +    417917 ACACCACTGAACTCAGAATCGGGACCCAGATTCGCCGGGGCAGCGCGGGACGGAGGCCTCTCCTGGGCTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     74661 71 + 149150640 ACACCGCTGAACTCAGACTCGGAACCCAGATTTGCCAGGGCAGCGCGGGACGGAGGCCTCTCCGGGGCTCC
i rheMac8.chrX                 C 0 I 109
s macFas5.chr7                 171664202 71 - 171882078 ACACCGCTGAACTCAGACTCGGAACCCAGATTTGCCAGGGCAGCGCGGGACGGAGGCCTCTCCGGGGCTCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120807 71 +  25972781 ACACCGCTGAACTCAGACTCGGAACCCAGATTTGCCAGGCCAGCGCGGGACGGAGGCCTCTCCGGGGCTCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82762 71 -   1025902 ACACCGCCGAACTCAGAATCGGCACCCAGATTTGCCAGGGCAGCGCGGGATGGAGGCCTCTCCGGGGCTCC
i cerAty1.NW_012001098v1       C 0 I 107
s chlSab2.chrUn_KE147541v1         64235 71 -    811265 ACACCACCGAACTCAGAATAAGAACCCAGATTTGCCAGGGCAGCGCGGGACGGAGGCCTCTCCGGGGCTCC
i chlSab2.chrUn_KE147541v1     I 540 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=9933.000000
s hg38.chrX_KI270880v1_alt          5185 5 +    284869 GTCTT
s gorGor5.CYUI01015925v1           75216 5 +    417917 GTCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     74841 5 + 149150640 GTCTT
i rheMac8.chrX                 I 109 C 0
s macFas5.chr7                 171664273 5 - 171882078 GTCTT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120878 5 +  25972781 GTCTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82940 5 -   1025902 GTCTT
i cerAty1.NW_012001098v1       I 107 C 0
s chlSab2.chrUn_KE147541v1         64306 5 -    811265 GTCTT
i chlSab2.chrUn_KE147541v1     C 0 I 110
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=29466.000000
s hg38.chrX_KI270880v1_alt          5190 16 +    284869 CCCTGTTAATAGACTG
s gorGor5.CYUI01015925v1           75221 16 +    417917 CCCTGTTAATAGACTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     74846 16 + 149150640 CCCTGTTCATAGACTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171664278 16 - 171882078 CCCTGTTCATAGACTG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120883 16 +  25972781 CCCTGTTCATAGACTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82945 16 -   1025902 CCCTGTTAATAGACTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64421 16 -    811265 CCCTGTTAATAGACTG
i chlSab2.chrUn_KE147541v1     I 110 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=170.000000
s hg38.chrX_KI270880v1_alt          5206  15 +    284869 AG---------------------------------------------------------------------------------------------------AGACGGAATGAGA
s rheMac8.chrX                     74862  15 + 149150640 AG---------------------------------------------------------------------------------------------------AGATGGAATGAGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171664294  15 - 171882078 CA---------------------------------------------------------------------------------------------------AGATGGAATGAGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          120899 114 +  25972781 CAAGATGGAATGAGAGTGTCCCCAGGTGGTCAAGTCAGGGACGTGTGTGTGTCTGTGTCTGTCAATCTCCTGGGCTCTGTCTTCCCTGTTCATAGACTGAGAGATGGAATGAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82961  15 -   1025902 AG---------------------------------------------------------------------------------------------------AGATGGGATGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64437  15 -    811265 AG---------------------------------------------------------------------------------------------------AGACGGAATGAGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e gorGor5.CYUI01015925v1           75237   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=24949.000000
s hg38.chrX_KI270880v1_alt          5221 30 +    284869 GCTTCGAAGGTGCTGGGGGAGGAGCATTGG
s rheMac8.chrX                     74877 30 + 149150640 GCTTTGAAGGTGCTGTGGGAGGAGCTCTGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          121013 30 +  25972781 GCTTTGAAGGTGCTGTGGGAGGAGCTCTGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           82976 30 -   1025902 GCTTCGAAGGTGCTGTGGGAGGAATTCTGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64452 30 -    811265 GCTTTGAAGGTGCTGTGGGAGGAGCTCTGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macFas5.chr7                 171664309  0 - 171882078 C
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=19716.000000
s hg38.chrX_KI270880v1_alt          5251 17 +    284869 GTGTCCCCAGGTGGTGA
s rheMac8.chrX                     74907 17 + 149150640 GCATCCCCAGGTTGTGA
i rheMac8.chrX                 C 0 I 121
s macFas5.chr7                 171664309 17 - 171882078 GTGTCCCCAGGTGGTCA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          121043 17 +  25972781 GCGTCCCCAGGTTGTGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           83006 17 -   1025902 GTGTCCCCAGGTGGTGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64482 17 -    811265 GCATCCCCAGGTGGTGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=2880.000000
s hg38.chrX_KI270880v1_alt          5268 6 +    284869 GCTTGG
s macFas5.chr7                 171664326 6 - 171882078 AGTCAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          121060 6 +  25972781 AGTCAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           83023 6 -   1025902 ACTCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64499 6 -    811265 AGTCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e gorGor5.CYUI01015925v1           75237 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     39788 1838 +    105888 M

a score=7094.000000
s hg38.chrX_KI270880v1_alt          5274 12 +    284869 --------GTGTGTGTGTGT
s panPan2.chrUn_NW_014024225v1     41661 12 +    105888 --------gtgtgtgtgtgt
i panPan2.chrUn_NW_014024225v1 M 1838 C 0
s macFas5.chr7                 171664332 18 - 171882078 GGACgtgtgtgtgtgtgt--
i macFas5.chr7                 C 0 I 10
s macNem1.NW_012017243v1          121066 11 +  25972781 G-------ACgtgtgtgt--
i macNem1.NW_012017243v1       C 0 I 10
s cerAty1.NW_012001098v1           83029 12 -   1025902 GG------gtgtgtgtgt--
i cerAty1.NW_012001098v1       C 0 I 441
s chlSab2.chrUn_KE147541v1         64505 18 -    811265 GGACGTGTGTGTGTGTGT--
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C

a score=43219.000000
s hg38.chrX_KI270880v1_alt          5286 65 +    284869 AGCCGACAGTCTCCCAGGCTCAGTCTTCCCTGTTAATAGACTGAGAGACGGAATGAGG------------------------------GCGTCCC
s panPan2.chrUn_NW_014024225v1     41673 65 +    105888 AGCCGTCAGTCTCCCGGGCTGCGTCTTCCCGGTTCATAGACTGAGAGATGGAATGAGG------------------------------GCGTCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s macFas5.chr7                 171664360 95 - 171882078 AGCCGTCAATCTCCTGGGCTCTGTCTTCCCTGTTCATAGACTGAGAGATGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAGCTCTGGGCATCCC
i macFas5.chr7                 I 10 C 0
s macNem1.NW_012017243v1          121087 65 +  25972781 AGCCGACAATCTGCTGGGCTCCATCTTCCCTGTTAATAGACTGAGAGACAGAATGAGA------------------------------GTGTCCC
i macNem1.NW_012017243v1       I 10 C 0
s chlSab2.chrUn_KE147541v1         64523 65 -    811265 GGCCAACAATCTGCTGGGCTCCATCTTCCCTGTTAATAGACTGAGAGACGGAATGAGA------------------------------GTGTCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C

a score=12043.000000
s hg38.chrX_KI270880v1_alt          5351 34 +    284869 CAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgt
s macFas5.chr7                 171664455 34 - 171882078 CAGGTTGTGAAGTCAGGGACgtgtgtgtgtgtgt
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          121152 31 +  25972781 CCGGTGGACAGCTCAGGGACG---GGgtgtgtgt
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         64588 34 -    811265 CCGGTGGACAGCTCAGGGATGTGTGTGTGTGTGT
i chlSab2.chrUn_KE147541v1     C 0 I 86
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=4090.000000
s hg38.chrX_KI270880v1_alt          5385 26 +    284869 gtgtgtg-----------------------tgtgtgtgtgtgtgtgtgt--
s macFas5.chr7                 171664489 51 - 171882078 gtgtgtgtagccgacaatctgggctccatctgtgtgtgtgtgtgtgtgtgt
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          121183 28 +  25972781 gtgtgtg-----------------------tgtgtgtgtgtgtctgtgtgt
i macNem1.NW_012017243v1       C 0 I 24
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=7214.000000
s hg38.chrX_KI270880v1_alt          5411 161 +    284869 gtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATA----GAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGA-------------------------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCAT------A
s macFas5.chr7                 171664540 192 - 171882078 gtAGCCGACAATCTGCTGGGC--------TCCATCTTCTCTGTTAATAGACTGAGATGGAATGAGAGTGTCCCCCGGTGGACAGCTCAGGGACGTGTGTGTGTGTGTAGCCGTCAATCTGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGC--------TCTGTCTTCCCTGTTAATAGACTGA
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         64622  86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     74924 121 + 149150640 I
e macNem1.NW_012017243v1          121211  24 +  25972781 I
e gorGor5.CYUI01015925v1           75237   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738   0 +    105888 C

a score=10918.000000
s hg38.chrX_KI270880v1_alt          5572 57 +    284869 GAGATGGAATGAGG------------------------------GCGTCCCCAGGTGGTGAGCTCAGGGACGTTtgtgtgtgtgtgt
s rheMac8.chrX                     75045 57 + 149150640 GAGATGGAATGAGA------------------------------GTGTCCCCCGGTGGACAGCTCAGGGACGTGTGTGTGTGTGTGT
i rheMac8.chrX                 I 121 I 15
s macFas5.chr7                 171664732 87 - 171882078 GAGATGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAGCTCTGGGCGTCCCCAGGTGGTGAAGTCAGGGACgtgtgtgtgtgtgtgt
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121211 24 +  25972781 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=7789.000000
s hg38.chrX_KI270880v1_alt          5629 149 +    284869 gtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCAT------AGAGATGGAATGA------------------------------GGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgt-------------------gtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGG
s macFas5.chr7                 171664819 196 - 171882078 gtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGC--------TTTGTCTTCCCTGTTAATAGACTGAGACACGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAATTCTGGGCGTCCCCAGGTGGACAGCTCAGGGGCGTGTGTGTGTGTAGCCGTCAATCTGTGCTCCGTCTGTGCGTGTGTGTAGCCGACAATCTCCTGGG
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         64622  86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75102  15 + 149150640 I
e macNem1.NW_012017243v1          121211  24 +  25972781 I
e gorGor5.CYUI01015925v1           75237   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738   0 +    105888 C

a score=9260.000000
s hg38.chrX_KI270880v1_alt          5778 72 +    284869 CTCCTGGGTTCCGTCTGCCCTGTTCATA------GAGACGGAATGAGGGCGT------------------------------CCCCAGGTGGTGAGCTCAGGGACGgt
s macFas5.chr7                 171665015 97 - 171882078 --------CTCCGTCTGCCCTGTTAATAGACT--GAGACGGAATGAGAGCTTCAAAGGTGCTGTGGGAGGAGCTCTGGGCACCCCGAGGTGGTGAACTCGGGGA-GGT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          121235 77 +  25972781 CTCCTGGGCTCTGTCTTCCCTGTTCATAGACTGCGAGACGGAATGAGAGTGT------------------------------CCCCAGGTGGTCAAGTCAGGGA-Cgt
i macNem1.NW_012017243v1       I 24 C 0
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75102 15 + 149150640 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=1518.000000
s hg38.chrX_KI270880v1_alt          5850  6 +    284869 gt--------gtgt
s rheMac8.chrX                     75117  6 + 149150640 gt--------gtgt
i rheMac8.chrX                 I 15 C 0
s macFas5.chr7                 171665112  6 - 171882078 GT--------GTGT
i macFas5.chr7                 C 0 T 160
s macNem1.NW_012017243v1          121312 14 +  25972781 gtgatgtgtggtgt
i macNem1.NW_012017243v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=10179.000000
s hg38.chrX_KI270880v1_alt          5856 28 +    284869 gtgtg----------tgtg-tgtgtgtgtgtgtgtgtgt
s rheMac8.chrX                     75123 28 + 149150640 gtgtg----------tgtg-tgtgtgtgtgtgtgtgtgt
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171664958 39 - 171882078 GTGTAGCCGTCAATCTGTGCTCCGTCTGTGCGTGTGTGT
i macFas5.chr7                 T 160 C 0
s macNem1.NW_012017243v1          121326 28 +  25972781 gtgtg----------tgtg-tgtgtgtgtgtgtgtgtgt
i macNem1.NW_012017243v1       C 0 I 1046
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=5083.000000
s hg38.chrX_KI270880v1_alt          5884 19 +    284869 AGCCGTCAATCTCCTGGGC
s rheMac8.chrX                     75151 19 + 149150640 AGCCGTCAATCTCCTGGGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171664997 19 - 171882078 AGCCGACAATCTCCTGGGC
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=191.000000
s hg38.chrX_KI270880v1_alt          5903 2 +    284869 TC
s rheMac8.chrX                     75170 2 + 149150640 TC
i rheMac8.chrX                 C 0 I 65
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e macFas5.chr7                 171665016 0 - 171882078 C
e gorGor5.CYUI01015925v1           75237 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738 0 +    105888 C

a score=0.000000
s hg38.chrX_KI270880v1_alt          5905 6 +    284869 CTGGGT
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75172 65 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e macFas5.chr7                 171665016 0 - 171882078 C
e gorGor5.CYUI01015925v1           75237 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738 0 +    105888 C

a score=717.000000
s hg38.chrX_KI270880v1_alt          5911 31 +    284869 TCCGTCTGCCCTGTTCTTA----GAGACGGAATGA------------------------------
s macFas5.chr7                 171665016 65 - 171882078 TCCGTCTGCCCTGTTAATAGACTGAGACGGAATGAGAGCTTCAAAGGTGCTGTGGGAGGAGCTCT
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75172 65 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=6263.000000
s hg38.chrX_KI270880v1_alt          5942 28 +    284869 GGGCGTCCCCAGGTGGTGAGCTCAGGGA
s rheMac8.chrX                     75237 28 + 149150640 GGGCGTCCCCAGGTGGTGAAGTCAGGGA
i rheMac8.chrX                 I 65 C 0
s macFas5.chr7                 171665081 28 - 171882078 GGGCACCCCGAGGTGGTGAACTCGGGGA
i macFas5.chr7                 C 0 T 800
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=3008.000000
s hg38.chrX_KI270880v1_alt          5970 50 +    284869 CGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGT
s rheMac8.chrX                     75265 39 + 149150640 C-----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGT
i rheMac8.chrX                 C 0 I 168
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e macFas5.chr7                 171665109 800 - 171882078 T
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=2411.000000
s hg38.chrX_KI270880v1_alt          6020 42 +    284869 CAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGA
s rheMac8.chrX                     75472 34 + 149150640 CAATCTCCTGGGCTCC--------GTCTGCCCTGTTAATAGA
i rheMac8.chrX                 I 168 I 54
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e macFas5.chr7                 171665109 800 - 171882078 T
e gorGor5.CYUI01015925v1           75237  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=0.000000
s hg38.chrX_KI270880v1_alt          6062 1453 +    284869 GATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCGCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGACAGAATGAGGGCGTCCCCAGGTGATCTCAGGGACGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACGTtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGACAGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAGACAGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATGGAGACAGAATGAGG
e chlSab2.chrUn_KE147541v1         64622   86 -    811265 I
e cerAty1.NW_012001098v1           83041  441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75506   54 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e macFas5.chr7                 171665109  800 - 171882078 T
e gorGor5.CYUI01015925v1           75237    0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738    0 +    105888 C

a score=29123.000000
s hg38.chrX_KI270880v1_alt          7515 595 +    284869 GCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGA------GACAGAATGAG------------------------------GGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgt---------------------------gtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGA----GATGGAATGAGGGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgt---------------------------------gtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGA------GACAGAATGAG------------------------------GGCGTCCCCAGGTGGTGAGCTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAGTCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCATAGAG------ATGGAATGAG------------------------------GGCGTCCCCAGGTGGTGAGCTCAGGGACGgtgtgtgtgtgtg--------tgtgtg-tgtgtgtgtgtgtgtgtgtgGCCGTCAATCTCCTGGGCTCCTGGGTTCCGTCTGCCCTGTTCAT
s macFas5.chr7                 171664309 725 - 171882078 GTGTCCCCAGGTGGTCAAGTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgt------AGCCGTCAATCTCCTGGGCTCT--------GTCTTCCCTGTTCATAGACTGAGAGATGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAGCTCTGGGCATCCCCAGGTTGTGAAGTCAGGGACgtgtgtgtgtgtgtgtgtgtgtagccgacaatctgggctccatctgtgtgtgtgtgtgtgtgtgtgtAGCCGACAATCTGCTGGGCTCC--------ATCTTCTCTGTTAATAGACTGAGATGGAATGAGAGTGTCCCCCGGTGGACAGCTCAGGGACGTGTGTGTGTGTGTAGCCGTCAATCTGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCCGTCAATCTCCTGGGCTCT--------GTCTTCCCTGTTAATAGACTGAGAGATGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAGCTCTGGGCGTCCCCAGGTGGTGAAGTCAGGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----AGCCGTCAATCTCCTGGGCTTT--------GTCTTCCCTGTTAATAGACTGAGACACGGAATGAGAGCTTTGAAGGTGCTGTGGGAGGAATTCTGGGCGTCCCCAGGTGGACAGCTCAGGGGCG-TGTGTGTGTGTAGCCGTCAATCTGTGCTCCGTCTGTGCGTGTGTGTAGCCGACAATCTCCTGGGCTCC--------GTCTGCCCTGTTAAT
i macFas5.chr7                 T 800 C 0
e chlSab2.chrUn_KE147541v1         64622  86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75506  54 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e gorGor5.CYUI01015925v1           75237   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     41738   0 +    105888 C

a score=3043.000000
s hg38.chrX_KI270880v1_alt          8110 13 +    284869 ----AGAGACGGAATGA
s gorGor5.CYUI01015925v1           75237 13 +    417917 ----AGAGACGGAATGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171665034 17 - 171882078 AGACTGAGACGGAATGA
i macFas5.chr7                 C 0 I 30
e chlSab2.chrUn_KE147541v1         64622 86 -    811265 I
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75506 54 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e panPan2.chrUn_NW_014024225v1     41738  0 +    105888 C

a score=4054.000000
s hg38.chrX_KI270880v1_alt          8123 9 +    284869 GGGCGTCCT
s gorGor5.CYUI01015925v1           75250 9 +    417917 GGGCGTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171665081 9 - 171882078 GGGCACCCC
i macFas5.chr7                 I 30 C 0
s chlSab2.chrUn_KE147541v1         64708 9 -    811265 GGGCATCCC
i chlSab2.chrUn_KE147541v1     I 86 C 0
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75506 54 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I
e panPan2.chrUn_NW_014024225v1     41738 0 +    105888 C

a score=100.000000
s hg38.chrX_KI270880v1_alt          8132 1 +    284869 C
s panPan2.chrUn_NW_014024225v1     41738 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75259 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171665090 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         64717 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
e cerAty1.NW_012001098v1           83041 441 -   1025902 I
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e rheMac8.chrX                     75506 54 + 149150640 I
e macNem1.NW_012017243v1          121354 1046 +  25972781 I

a score=113996.000000
s hg38.chrX_KI270880v1_alt          8133 72 +    284869 AGGTGGTGAGCTCAGGGACGTGTGTGTAGCCATGATTATCCTTTAGTACCTGGTCCCCGTGCCATCCGAGCC
s panPan2.chrUn_NW_014024225v1     41739 72 +    105888 AGGTGGTGACCTCAGGGATGTGTGTGTAGCCATCATTATCCTTTAGTACCTGGTCCCCGTGCCCTCTGAGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75260 72 +    417917 AGGTGGTGAGCTCGGGGACGTGTGTGTAGCCATGATTATCCTTTAGTACCTGGTCCCCGTGCCCTCCGAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     75560 72 + 149150640 AGGTGGTGAACTCGGGGAGGTGTGTGTAACCATCGATATCCTTTAGGACCTGCTCTCTGTGCCCTCCGAGCT
i rheMac8.chrX                 I 54 C 0
s macFas5.chr7                 171665091 72 - 171882078 AGGTGGTGAACTCGGGGAGGTGTGTGTAGCCATCGATATCCTTTAGGACCTGCTCTCTGTGCCCTCCGAGCT
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           83482 72 -   1025902 AGGTGGTGAACTCGGGGAGGTGTGTGTAGCCATCAATATCCTTTAGGACCTGCTCTCTGTGCCCTCCCAGCT
i cerAty1.NW_012001098v1       I 441 C 0
s chlSab2.chrUn_KE147541v1         64718 72 -    811265 AGGGGGTGAAGTCAGGGGCGTGTGTGTAGCCATCAGTATCCTTTAGTACCTGGTCTCTGTGTCCTCCGAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          121354 1046 +  25972781 I

a score=158181.000000
s hg38.chrX_KI270880v1_alt          8205 70 +    284869 ATCCAAGGGCTTCAGGA-GGCCGCGCAGAAGGAGGGTCGGTAAGCGAGTCCACGGACCACCACGCAGGCCC
s panPan2.chrUn_NW_014024225v1     41811 70 +    105888 ATCCAAGGGCTTCAGGA-GGCCGCGCAGAAGGAGGGTCGGTAAGCGAGTCCACGGACCACCACGCAAGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75332 70 +    417917 ATCCAAGGGCTTCAGGA-GGCCGCGCAGGAGGAGGGTCCGTAAGCGATTCCACGGACCACCACGCAGGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     75632 70 + 149150640 ATCCAAGGGCGTCAGGA-GGCTGAGCAGAACGGGTGTCCGTAAGCGAGTCCACGGACCACCACGCAGGCCC
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171665163 70 - 171882078 ATCCAAGGGCGTCAGGA-GGCTGAGCAGAACGGGTGTCCGTAAGCGAGTCCACGGACCACCACGCAGGCCC
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          122400 71 +  25972781 ATCCAAGGGCGTCAGGAGGGCTGAGCAGAACGGGTGTCCGTAAGCGAGTCCACGGACCACCACGCAGGCCC
i macNem1.NW_012017243v1       I 1046 I 2705
s cerAty1.NW_012001098v1           83554 70 -   1025902 ATCCAAGGGCGTCAGGA-GGCTGAGCAGGAGGGGTGTCCGTAAGCGACTCCACAGACCACCACGCAGGCCC
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1         64790 70 -    811265 ATCCGAGGGCGTCAGGA-GGCTGAGCAGAAGGAGTGTCCATAAGGGAGTCCACGGACCACCACGCAGGCCC
i chlSab2.chrUn_KE147541v1     C 0 I 1
e colAng1.NW_012115411v1          133530 4693 +   1230721 M

a score=93716.000000
s hg38.chrX_KI270880v1_alt          8275 65 +    284869 TGACCCCGCCAGGGGCCCTTTGGAGGGTGAGCCCTGCGTGTTGGGGGGATGATGGCTCCGGAGGG
s panPan2.chrUn_NW_014024225v1     41881 65 +    105888 TGACCCTGCCAGGGGCCCTTGGGAGGGTGAGCCCTGCGTGTTGGGGGGATGATGGCTCCGGAGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75402 65 +    417917 TGACCCCGCCAGGGGCCCTTTGGAGGATGAGCCCTGCGTGTTGGGGGGATGATGGCTCCGGAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     75703 63 + 149150640 GAGCCCGGCCAGGGGTCCGTGGGAGGGTGAGCCCTGC--GGTCGGGGGGTGATGGCTCTGGGGGG
i rheMac8.chrX                 I 1 I 1
s macFas5.chr7                 171665234 63 - 171882078 GAGCCCGGCCAGGGGTCCGTGGGAGGGTGAGCCCTGC--GGTCGGGGGGTGATGGCTCTGGGGGG
i macFas5.chr7                 I 1 I 1
s cerAty1.NW_012001098v1           83625 63 -   1025902 GAGCCCGGCCAGGGGTCCTTGGGAGGGTGAGCCCTGC--GGTTGGGGGATGATGGCTCTGGGGGG
i cerAty1.NW_012001098v1       I 1 I 1
s chlSab2.chrUn_KE147541v1         64861 62 -    811265 GAGCCCGGCCAGGGGTCCGTGGGAGGGTGAGCCCTGC--AGTTGGGGGAAGATGGCTCT-GGGGG
i chlSab2.chrUn_KE147541v1     I 1 I 1
e colAng1.NW_012115411v1          133530 4693 +   1230721 M
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=401707.000000
s hg38.chrX_KI270880v1_alt          8340 182 +    284869 TGAGCTCTGGGATGAGAGGGGACGTGCAGGT-----------GGCCGCATTGCAGACACAGCTGGCTCGGGACCTGGGCGCCATCTGCCGTCGACT----CAGCTCGCTCCTGAGCTGTGCCTCTTCCTTGCCTCACGTTGGAGATAAAAAGCCATAGATggccgggggcggtggctcaggcctgtcatcccagcac
s panPan2.chrUn_NW_014024225v1     41946 182 +    105888 TGAGCTCTGGGATGAGAGGGGATGTGCAGGT-----------GGCCGCATTGCAGACACAGCTGGCTCGGGACCTGGGCGCCATCTGGCGTCGACT----CAGCTCGCTCCTGAGCTGTGCCTCTTCCTTGCCTTACGTTGGGGATAAAAAGCCATAGATggccgggcgcggtggctcaggcctgtcgtcccggcac
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75467 182 +    417917 TGAGCTCTGGGATGAGAGGGGACGTGCAGGT-----------GGCCGCATTGCAGACACAGCTGGCTCGGGACCTGGGCGCCACCTGGCGTCGACT----CAGCTCGCTCCTGAGCTGTGCCTCTTCCTTGTCTTACGTTGGGGATAAAAAGCCATAGATggccgggcgcggtggctcaggcctgtcatcccagcac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     75767 196 + 149150640 CGAGCTCTGGGACGA-AGGGGACGAGCAGGTCCGGGGATGAGGGCTGCGTTGCAGACAGAGCTGGCTCGGGGCCTGGGCGCCACCTGGCGTCGACTCGGGCAGCTCACGCCTGAGCTGTGGCTCTTCCTGGTCTGATTTTGGGGACAAAAAGCCACAGGTggccgggcgcggtggctcgggcctgtcctcccagcac
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171665298 196 - 171882078 CGAGCTCTGGGACGA-AGGGGACGAGCAGGTCCGGGGATGAGGGCTGCGTTGCAGACAGAGCTGGCTCGGGGCCTGGGCGCCACCTGGCGTCGACTCGGGCAGCTCACGCCTGAGCTGTGGCTCTTCCTGGTCTGATTTTGGGGACAAAAAGCCACAGGTggccgggggcgatggctcaggcctgtcctcccagcac
i macFas5.chr7                 I 1 C 0
s cerAty1.NW_012001098v1           83689 196 -   1025902 CGAGCTCCGGGACGA-AGGGGACGAGCAGGTCCGGGGATGAGGGCTGCGTTGCAGACAGAGCTGGCTCGGGGCCTGGGCGCCACCTGGCGTCCACTCGGGCAGCTCACGCCTGAGCTGTGGCTCTTCCTGGTCTGATTTTGGGGACAAAAAGCCACAGGTggccgggcgcggtggctcaggcctgtcctcccagcac
i cerAty1.NW_012001098v1       I 1 I 4456
s chlSab2.chrUn_KE147541v1         64924 196 -    811265 TGAGCTCTGGAACGA-AGGGGACGAGCAGGTCGGGGGATGAGGGCTGCGTTGCAGACAGAGCTGGCTCGGGGCCTGGGCGCCACCTGGCGTCGACTCGGGCAGCTCACGCCTGAGCTGTGCCTCTTCCTGCTGTGATTTTGGGGACAAAAAGTCATAGGTggccgggcgcggtggctcaggtctgtcctcccagcac
i chlSab2.chrUn_KE147541v1     I 1 C 0
s colAng1.NW_012115411v1          138313 194 +   1230721 TGAGCTCTGGGACGAGAGGGGACGTGCAGGTCGGGGGATGA-GGCTGCCTTGCAGACAGAGCTGGCTCGGGACCTGGGCGCCACCTGGCGTCGACTCGGGCTGCTCACGCCTGAGCTGTGCCTCTTCCTGGTCTGAATTTGGGGACAAAAAGCTGCAGGTggccgg--gcggtggctcaggcctgtcctcccagcac
i colAng1.NW_012115411v1       M 4693 C 0
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=139450.000000
s hg38.chrX_KI270880v1_alt          8522 101 +    284869 tgt-gggataccagcgcaggagggttgcctcagcccaggggttcgagaccagcctggccagcatagcgagaccctcttctctgtaacaattttttttttttc
s panPan2.chrUn_NW_014024225v1     42128  99 +    105888 tgt-gggataccaacgcaggagggttgcctcagcccaggggttcgagaccagcctggccagcgtagcgagaccctcttctc--taagaattttttttctttt
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           75649  99 +    417917 tgt-gggataccaatgcaggagggttgcctcagcccaggggttcgagaccagcctggccagcatagcgagaccctcttctctgtaacaattttttttttc--
i gorGor5.CYUI01015925v1       C 0 I 551
s rheMac8.chrX                     75963  92 + 149150640 cgt-cggaggccaacgcaggaggattgcctgagccctggggttccagaccagcctggccaac--agcgagaccctcttctctgtaagaatttttt-------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171665494  99 - 171882078 cgt-cggaggccaacgcaggaggattgcctgagccctggggttccagaccagcctggccaac--agcgagaccctcttctctgtaagaaTTTTTTTTTTTTT
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         65120  99 -    811265 cgt-cggaggccaacgcaggaggattgcctgagcccaggggttccagacccgcctggccaac--agcgagaccctcttctctgtaagaattttttttttttg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          138507 100 +   1230721 catccggaggccgacacaggaggattgaccgagcccacgagatccagaccagcctggccgac--agcgagaccctcttctctgtaagaaTACttttttcttt
i colAng1.NW_012115411v1       C 0 C 0
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=910.000000
s hg38.chrX_KI270880v1_alt          8623 1 +    284869 t
s panPan2.chrUn_NW_014024225v1     42227 1 +    105888 t
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           76299 1 +    417917 t
i gorGor5.CYUI01015925v1       I 551 C 0
s macFas5.chr7                 171665593 1 - 171882078 T
i macFas5.chr7                 C 0 I 1334
s colAng1.NW_012115411v1          138607 1 +   1230721 t
i colAng1.NW_012115411v1       C 0 I 3
e chlSab2.chrUn_KE147541v1         65219 0 -    811265 C
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e rheMac8.chrX                     76055 0 + 149150640 C
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=10980.000000
s hg38.chrX_KI270880v1_alt          8624 13 +    284869 ttttttttttttt
s panPan2.chrUn_NW_014024225v1     42228 13 +    105888 ctttttttttttt
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           76300 13 +    417917 ttttttttttttt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     76055 12 + 149150640 -tttttttttttt
i rheMac8.chrX                 C 0 I 1
s colAng1.NW_012115411v1          138611 13 +   1230721 ttttttttttttt
i colAng1.NW_012115411v1       I 3 I 4650
e chlSab2.chrUn_KE147541v1         65219  0 -    811265 C
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I

a score=190689.000000
s hg38.chrX_KI270880v1_alt          8637 290 +    284869 gaaacagagtctcgct-ctgtcacccaggctggactgtagtggtacgatctcagctcacggaaacctccgcctcccggg-----------ttcccgggttcaagtgattctcctgcctcagcc-tcccgagtagctgggattacaggcagctgccaccatgcctggctaaattctgtatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatccgcccac-ctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggcc
s panPan2.chrUn_NW_014024225v1     42241 282 +    105888 gagacagagtctcgct-ctgtcacccaggctggactgtagtggcgtgatctcagctcacggaaacctctgcc-------------------tcccgggtttaagcgattctcctgcctcagcc-tcccgagtagcttgcattacaggcacccgccaccacgcctggctaaattctgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgc-ctcagcctcccaaagtgctgggatgacaggcgtgagccacggtgcctggcc
i panPan2.chrUn_NW_014024225v1 C 0 I 292
s gorGor5.CYUI01015925v1           76313 301 +    417917 gagatggagtttcgctcctgttgcccaggctggagtgcaatggcgcgatctcagctcaccgcaacctccgcctcctgggttcaagcgattttcccgggttcaaacgattctcctgcctcagccttcctgagtagctgggattacaggtgtgcaccaccatgcccggctaa--tttttatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcccgacgtcaggtgatccacccgc-ctcggcctcccagagtgctgggatgacaggcgtgagccaccgcgcccggcT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     76068 278 + 149150640 gagacagagtccgact-gtgtcgcccaggctggagtgcggtggtgcgatctcagctcactacaacctccgcc-------------------tcccgggttcaagccattctcctgcctcagcc-tcccgagtagctgggatgacaggtgcacgccactggcccaagctaatgtttgtagttttaatagagacggggttc--ctatgttggccaggctg--tctgaactcc-aacctcaggtgatctgcccgctctcagcctctcaaagtgctgggatgacagacgtgagccaccgcgcccggcc
i rheMac8.chrX                 I 1 C 0
s chlSab2.chrUn_KE147541v1         65219 280 -    811265 gagacacagtctctct-ctgtcccccaggctggagtgcagtggtgcgatctcagttcaccgcaacctccacc-------------------tccggggttcaagcgattctcctgcctcagcc-tcccgagtagctgggatgacaggcacctgccaccgtgcctggctaatttttgtatttttagtaaagacgaggtttcaccatggtggccaggctgctctcgatctcctgacctca--tgatccgcccgc-ctcggcctcccaaagtgctgggatggcaggcgtgagccgctgcgcctggcc
i chlSab2.chrUn_KE147541v1     C 0 I 14501
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I

a score=273.000000
s hg38.chrX_KI270880v1_alt          8927 1 +    284869 t
s gorGor5.CYUI01015925v1           76614 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     76346 1 + 149150640 t
i rheMac8.chrX                 C 0 I 1822
e chlSab2.chrUn_KE147541v1         65499 14501 -    811265 I
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=147089.000000
s hg38.chrX_KI270880v1_alt          8928 1773 +    284869 ctttcaggtttttatatgtaactttgccactcagtcggtactgaagccgttatg--gaggcctgcctggtgagatgcggctgccacaGTGTGGCTGGTATTCGAAACACACAGGAGGCCGCAGCCAGCTTAGCAGAAGCACCAGGGCTTTCGGAACTTGGTTTTGAGAGTTTCCTGTTTTCTTGACTTTCATATACCATGGATGGTAATAACTGTTGG-GGGGAAAAAGCTATTAAAGATTCCTGTGGATGGTGAGATGACCTTGGTTTCAGAAACACCCAGACACAGAGAATTGTGCATTTTACAATCCAATAAATCTACgctgggcacggtggctcatgcctgtcatcccagcactttgggaggccgaggtaggtggatcacctgaggtcaggagttcgagaccaacctggccaacatagtgagaacctgtctctactaaaaatacaaaaaattagcggggcgttgtggcaggtgcctgtaatcccagctgctctggaggctgaggtgggagaattgcttgaacccgggaggcagaggttgcagtgagctgagaccatgctgctgtactccagcctgggtgacagggcgaggatccatcttaaaaaaaaaaaa------------TCTGATCATTTACCTGTGCACCTTCACAAGTGTTAAAAAAAAAAAAAAAccgggcgtggtggctcacgcctgtcatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagatcgagaccatcctggctaattcggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggaaggtgcctgtagtcccagctgctcaggaggctgaggcgggagaatggcgtgaacccaggaggcggagcttgcagtgagctgagattgcagcactgcactccagcctgggtgacagagccagactctgtctcaaaaaaaaaaaaaa----gaTTGGGTTGATATTTTACCTACTATAATCTTATATGTTTGCAATTTCCTGTCATTGAGTTTTATAACTTTCTGCCCTTTGCTGACAAAAACATTTAAAATGTCTCATGGCAGCCTGTGTTCTTAAAATTCAAACTGTTTATCCATAGCCCTTGAGAGAAGGGTTTAATGTGAGTTGGTTGGGAGTGACCGttgtctg-tttttttgagacagagtgtcgctcgctcgcccaggctggagtgtagtggcgcgatctcggctcactgcaaactctgccttccaggttcaagtgatccttctg-ccccagccctccagctagcttggattacaaacatgcaccaccacacctggctaacttttgtatttttggtagagacagcgttttaccacgttggccaggctggtctcaaaatcctgagctcaagggatccgcctgcctcagcctcccaaagtgctgggattacaggcgtgaggcacgacgtcaggccAAGGGGGTGGCTGTTTTATAACAGGTTTGCAAGTttgtttttgtttttgtttttctttttttttgagg--tggagttttgctcttgttccccaggctggagtgcaatggcaagatctcggctcactgcagcctctgcctcccggtttcaagggattctcctgcctcagcctctcgagtagctgggattacaggcacctgccaccatgcctggttaattttgtatttttagtagagataggggttttt--ccgtgctggccaggctggtctcaaactcccgaactcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgag
s gorGor5.CYUI01015925v1           76615 1787 +    417917 ctttcaggtttttatatgtaactttgccgctcagtcggtactgaagccgttatgtggaggcctgcctggtgagatgtggccgccacaGTGTGGCTGGTATTCGAAACACACAGGAGGCCGCAGCCAGCTTAGCAGAAACACCAGGGCTTTCGGAACTTGGTTTTGAGAGTTTCCTGTTTTCTTGACTTTCATATACCATTGATG-TAATGACTGTTGGTGGGGAAAAAGCTATTAAAGATTCCTGTGGATGGTGAGATGACCTTGGTTTCAGAAACACCGAGACATAGAGAATTGCGCATTTTAGAATCCAGTAAATCTACgctgggcacggtggctcatgcctgtcatcccagcactttgggaggccgaggtaggtggatcacctgaggtcaggagttcgagaccaacctggccaacatagtgagaacctgtctctactaaaaatacaaaaaattagccgggcgtgctggcaggtgcctgtaatcccagctgctctggaggctgaggtgggagaattgcttgaacccgggaggcagaggttgcagtgagctgagaccatgccgctgtactccagcctgggtgacagggcgagtctccatctaaaaaaaaaaaaaaaaaaaaaaaaaTCTGATCATTTACCTGTGCGCCTTTaaaaaaaa-aaaaaaaaaacaaaaccgggtgcagtggctcacgcctgtcatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagtttaagaccagcctggctaatttggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggtgcctgtagtcccagctactcaggaggctgaggcgggagaatggcgtgaacccaggaggcggagcttgcagcgagctgagattgcagcattgcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaaagaTTGGGTTGATATTTTACCTACTATAATCTTATATGTTTGCAATTTCCTGTCATTGAGTTTTATAACTTTCTGCTCTCCGCTGACAAAAACATTTAAAATGTCTCATGGCAGTCTGTGTTCTTAAAATTCAAACTGTTTATCCATAGCCCTTGAGAGAAGGGTTTAATGTGAGTTGGTTGGGAGTGACCGttgtctgttttttttgagacagagtgtcgctcgctcgcccaggctggagtgtagtggcgcgatctcggctcactgcaaactctgccttccaggttcaagtgatccttctgcccccagccctccagctagcttggattacaaacatgcaccaccacacctggctaacttttgtatttttggtagagacagcgttttaccacgttggccaggctggtctc-aaatcctgagctcaaggcatccacctgcctcagcctcccaaagtgctgggattgcaggcgtgaggcacgacgtcaggccAA-GGGGTGGCTGTTTTATAACAGGTTTGCAAG------tttgtttttctttttcttttttggggggggacggagttttgctcttgttgcccagactggagtgcagtggcgcgatctcagctcactgcaacctccccctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacgcaccaccatgccggctaatttttgtattattagtacagat-ggggtttttcaccatattgaccaggctggtctcaagctcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggatgacaggcgtgag
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         65499 14501 -    811265 I
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523  292 +    105888 I

a score=0.000000
s hg38.chrX_KI270880v1_alt         10701 213 +    284869 cccccgtgcccagccAGGGGGTTGCTGTTTTATAATAGGTTTGCAAGTTTGttttttgttttgttttgttttgtttttttgagacggagttttgctcttgttgcccaggccggagtgcaatggcacaaccttggctcactacaacctccgcctcccgggttcaagctattctcctgcctcagtctcctgagtagctgggattacaggcgtcca
e chlSab2.chrUn_KE147541v1         65499 14501 -    811265 I
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e gorGor5.CYUI01015925v1           78402   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=651.000000
s hg38.chrX_KI270880v1_alt         10914 8 +    284869 ccaccacg
s gorGor5.CYUI01015925v1           78402 8 +    417917 ccaccaca
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         65499 14501 -    811265 I
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=29632.000000
s hg38.chrX_KI270880v1_alt         10922 144 +    284869 cccggccaaGGGGGTGGCTGTTTTATAACCAGTTTGCAAGTTTGTTTTTCTCGTGTGTTAGAGGAAAATCTCTTCATGATATGGTGAAGCCGTCGTCTGTTTTGGAAGACGGTGGCCAGGAAAATGGTGGTAAGTTCTCCTGAA
s gorGor5.CYUI01015925v1           78410 129 +    417917 cctggccAAGGGGGTGGCTGTTTTATAACCAGTTTGCAAGTTTGTTTTTCTCGTGTGTGAGAGGAAAATCTCCTCATGATATGGTGAAGCCGTCGTCTGTTTTGGAAGACGGTGG---------------TAAGTTCTCCTAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         80000 140 -    811265 cccagccAAGGGGATGGCTGTTTTATAACAGGTTTGTGA----GTTTTTCTTGTGTGTGAGGGGAAAGTCTCTTCACGGTATGGCGAAGCCGTCGTCTGTTTTGGAAGACGGTGGCCAGGAAAACGGTGGTCAGTTCTCCCGAA
i chlSab2.chrUn_KE147541v1     I 14501 I 102
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=260.000000
s hg38.chrX_KI270880v1_alt         11066 4 +    284869 AGCA
s gorGor5.CYUI01015925v1           78539 4 +    417917 AGCG
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80140 102 -    811265 I
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=21553.000000
s hg38.chrX_KI270880v1_alt         11070  95 +    284869 AACGCAGAAGGAAATAAAAATGACTGACAATTAGATCGTACAAAGATGAGCAttgtt--------------tttatttattt-----tttttgagacgaagtcttgttctgtca
s gorGor5.CYUI01015925v1           78543  99 +    417917 AACGCAGAAGGAAATAAAAATGACTGACAATTAGATCGTACAAAGATGAGCAttgtt--------------tttatttatttattt-tttttgagacggagtctcgttctgtcg
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         80242 114 -    811265 AACACAGAAGGAAAGAAAAATGACTAACAATTAGATCGTACAAAGATGAGCATTGTTTGtttatttatttatttatttatttatttatttttgagacggggtctcgctctgttg
i chlSab2.chrUn_KE147541v1     I 102 C 0
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I
e panPan2.chrUn_NW_014024225v1     42523 292 +    105888 I

a score=112877.000000
s hg38.chrX_KI270880v1_alt         11165 257 +    284869 cccaggctggagtgcaatggcacgatcttggctcactgcaacctctgcctcccaggttcaagtgattctactgcctcagcctcctgagaagctagaatt--acaggcatgctccaccactacccagctaatatttgtagtttt-agtagagacgggatttcaccatgttggccaggctggtctcgaactcctga-cctcaggtgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgccc
s panPan2.chrUn_NW_014024225v1     42815 259 +    105888 cccaggctggagtgcagtggcgggatctcggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattttacaggcacctgccatcac-gcccagctaatttttgtattttttagtagagaccgggtttcgccacgttggtcatgttggtctcgaactcctga-cctcaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggcgtgagccacctcgccc
i panPan2.chrUn_NW_014024225v1 I 292 C 0
s gorGor5.CYUI01015925v1           78642 258 +    417917 cccaggctggagtgcagtggcgcgatcttggctcactgcaacctctgccttccgggttcaagtgattctcctgcctcagcctcctgagaagctagaatt--acaggcgcctgcccaccttgcctagctaatttttgtattttt-agtggagacggggtttcaccatgttggccaggctggtctcgaactcctgaccctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgccc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         80356 257 -    811265 cccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgtcgcccggattgaagcgattctcctgcctcagcctcccaagtagctgggatg--acaggtgcgtgccacgatgtcccagctaatgtttgtattttt-agtagagacggggtttcaccatgttggccaggctggtctcgaactcctga-cctcaggtgatccgcccgtctcagcctctcaaagtgctgggatgacagatgtgagccaccacgccc
i chlSab2.chrUn_KE147541v1     C 0 T 2792
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I

a score=4005.000000
s hg38.chrX_KI270880v1_alt         11422 15 +    284869 cggccCCGGATTCTA
s panPan2.chrUn_NW_014024225v1     43074 14 +    105888 -ggccCCGGATTCTA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           78900 14 +    417917 -ggccCCGGATTCTA
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          138624 4650 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I

a score=105394.000000
s hg38.chrX_KI270880v1_alt         11437 236 +    284869 TTTCTTAAACTGCAGGAAATACTAAATACTTTACATGCGTATGTTTCTCATTTCATTTTCCTACAGG---AATTGGAGAGTGAGTTGCTGAGATTTC-----ATTTTTATTCTCTTGGTCCTCATCATGCAAATGGCTAAATGGtttttttttg------------aaacagggtctcgctctgtcccccaggctggagtgcaatggggcgatctcggctcactgcaacctctgcctcccgggttcaagccattct
s panPan2.chrUn_NW_014024225v1     43088 253 +    105888 TTTCTTAAACTGCAGGAAATACTAAATACTTTACGTGCGTATGTTTCTCATTTCATTTTCCTACAGG---AATTGGAGAGTGAGTTGCTGAGATTTCTTTTCATTTTTATTCTCTTGGTCCTCATCATGCAAATGGCTAAATGGGttttttttgttttttttttttaaacagggtcttgctctgtcacccaggctggagtgcagtggcgcgatctcggctcagtgcaacctctgcctcccgggttcacgccattct
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           78914 253 +    417917 TTTCTTAAACTGCAGGAAATACTAAATACTTTACGTGCGTATGTTTCTCATTTCATTTTCCTACAGGAATAATTGGAGAGTGAGTTGCTGAGATTTCTTTTCATTTTTATTCTCTTGGTCCTCATCATGCAAATGGTTAAATGGtttttttttt---ttttttttaaaacagggtctcgctctgtcacccaggctggagtgtagtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagcgattct
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          143274 242 +   1230721 TTTCTTAAACTGGAAGAAATCCCGAATACTTCCCGTGTGTGTGTGTCCCATGTCATTTTCCTAAAGG---CATTGGAGAGTGAGTTGCTGAGATTCTCTTCATGTTTTATTCTC-TGGTCTTCATCATGCAAACGGCTAAATTGGttttttttc----------tgaaacaccgtctcgctctgtcgcccaggctggagtgcagcggcgccatctcggctccctgcaacctccgcctcccgggttcaagcgattct
i colAng1.NW_012115411v1       I 4650 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171665594 1334 - 171882078 I

a score=162649.000000
s hg38.chrX_KI270880v1_alt         11673 223 +    284869 cctgcctcagcctcccgagtagctgggatcacaggtg--cgcaccaccgtgtccgtctgattgttaaatttttcctagagacgaggttttgccacgttgcccaggctggtctcaaactcctgagctcaggtgatccccccacc--tcggcctccgaaggcgctgggcttccaggcgtgCAGAGGGCTCTTTGTCTACATCCGTCACTGGATTTTCTACCCACGGGGA
s panPan2.chrUn_NW_014024225v1     43341 223 +    105888 cctgcctcagcctcccgagtagctgggatcacaggtg--tgcaccaccgtgtccgtctgcttgttaaatttttcctagagacgaggtttcgccacgttgcccaggctggtctcaaacccctgagctcaggtgatccccccacc--tcggcctccgaaggcgctgggcttccaggcgtgCAGAGGGCTCTTTGTCTACATCCGTCACTGGATTTTCTACCCACGGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79167 223 +    417917 cccgcctcagcctcccgaggagctgggatcacaggtg--tgcaccaccgcgtccgtctcattgtttaatttttcctagagacgaggtttcgccacgttgcccaggctggtctcaaacccctgagctcaggtgatccccccacc--tcggcctccgaaggcgctgggcttccaggcgtgCAGAGGGCTCTTCGTCTACACGCATCACTGGATTTTCTACCCACGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171666928 219 - 171882078 cccgtctcggcctcccgagtagctggggtgacaggtg---ccgccaccatgtccctctgattgt--aattcttcctagacacgaggtttctccatgtggcccaggctgggctcagactcctgagctcaggggatccccccaca--tcggcttcccaaggcgctgggggtccaggtgtgCAGACGGTTCTTCGTCTACACGCGTCCCTGGATTTCCTGCCA-CGGGGA
i macFas5.chr7                 I 1334 C 0
s colAng1.NW_012115411v1          143516 225 +   1230721 cctgcctcagcctcccgcgtagctggggtgacaggtgcacctgccaccacgtccatctgattgt--aattcttcctagacacgaggtttctccgtgtggcccaggctgggctgagactcctgagctcaggtgatccccccccaggtcggcctcccaaggcgctggggttccaggcgtgCGGAGGGCTCTTCGTCTACACACGTTCCTGGATTTTCTACCCTCGGGGA
i colAng1.NW_012115411v1       C 0 I 39
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=28631.000000
s hg38.chrX_KI270880v1_alt         11896 119 +    284869 CATGTGACCCCAGCGAGGTGGTCGGGGAGTCGTCGCCGGCCGGCGCTGCAGCCCAGGGATGATGACGGCTCTAGGAGTTTGGTTGTGGAGCACAGATGCCGGCG--GTGTGGGCACGAGGC
s panPan2.chrUn_NW_014024225v1     43564 121 +    105888 CACGTGACCCCAGCGAGGTGGTCAGGGAGTCGTCGCCGGCCGGCGCTGCAGCCCAGGGATGATGACGGCTCTAGGAGTTTGGTTGTGGAGCACAGATGCCGGCGGTGTGTGGGGACGAGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79390 119 +    417917 CACGTGACCCCAGCGAGGTGGTCAGGGAGTCGTCGCCGGCCGGCGCTGCAGCCCAGGGATGATGACGGCTCTAGGAGGTTGGTTGTGGAGCACAGATGCCGGCG--GTGTGGGCACGAGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667147  33 - 171882078 ----------------------------------------------TACAA----------------------------------------ATAGACGCCCGCG--GTGTGGGGACCTGGC
i macFas5.chr7                 C 0 I 6
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143741  39 +   1230721 I
e rheMac8.chrX                     76347 1822 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=144022.000000
s hg38.chrX_KI270880v1_alt         12015 125 +    284869 CCTGCACCTGCGTTTCTCCTGCACGGGCCCCGGAACCCCGGGATGGGATCTCTGTGGAGTGATCACGTCAGTGGGCTCTCGGCGAGGCTGGCGGGTGGGAGTCGGCGGCATCCGGGCC-GGGCCCC
s panPan2.chrUn_NW_014024225v1     43685 126 +    105888 CCTGCACCTGCGTTTCTCCTGCACAGGCCCCGGAATCCCGGGATGGGAGCGCTGTGGAGTGATGACGTCAGTGGGCTCTCGGCGAGGCTGGACAATGGGAGTCGGCAGCATCCGGGCTGGGGCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79509 125 +    417917 CCTGCACCTGCGTTTCTCCTGCACAGGCCCCGGAACCCCGGGATGGGATCGCTGTGGAGTGATGAAGTCAGTGGGCTCTCGGTGAGGCTGGCGGATGGGAGTCGGCAGCATCCGGGCT-GGGCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78169 125 + 149150640 CCTGCACCTGCGTGTTTCCTGCACGGGCCCCAGAACCCTGGGACGGGATCCCTGTGGTGTGACGAAGTCAGTGGCCCCTCGGTGAGGCTGGGGGATGGGAGGGGGCGGCATCCAGGCT-GGGCCCC
i rheMac8.chrX                 I 1822 C 0
s macFas5.chr7                 171667186 125 - 171882078 CCTGCACCTGCGTGTTTCCTGCACGGGCCCCAGAACCCTGGGACGGGGTCCCTGTGGTGTGACGAAGTCAGTGGCCCCTCGGTGAGGCTGGGGGATGGGAGGGGGCGGCATCCAGGCT-GGGCCCC
i macFas5.chr7                 I 6 C 0
s colAng1.NW_012115411v1          143780 125 +   1230721 CCTGCACCTGCGTGTTTCCCGCGCAGGCCCCAGAACCCGGGGACGGGATCCCTGTGGAGTGAGGAAGTCGGTGGCCCCTCGGTGAGGCTGGGGGATGGGAGGCGGCAGCATCCAGGCT-GGGCCCC
i colAng1.NW_012115411v1       I 39 M 495
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=14676.000000
s hg38.chrX_KI270880v1_alt         12140 17 +    284869 TGAGGCTTGGCTCCCTC
s panPan2.chrUn_NW_014024225v1     43811 17 +    105888 CGAGGCTTGGCTCCCTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79634 17 +    417917 TGAGGCTTGGCTCCCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78294 16 + 149150640 -GAGGCCTGGCTCCCTC
i rheMac8.chrX                 C 0 I 41
s macFas5.chr7                 171667311 16 - 171882078 -GAGGCCTGGCTCCCTC
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=1634.000000
s hg38.chrX_KI270880v1_alt         12157 13 +    284869 ----------------------------TCTGCACCCCAGG
s panPan2.chrUn_NW_014024225v1     43828 13 +    105888 ----------------------------TCTGCACCCCGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79651 13 +    417917 ----------------------------TCTGCACCCCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667327 41 - 171882078 ACCGTGTCCCCCTCACCGTGTCCCCCTCACCGTGTCCCTGA
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78310 41 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=41067.000000
s hg38.chrX_KI270880v1_alt         12170 49 +    284869 GGTCCCACAGGCTGGTGACAGCGCGACTGAAGGCCACGCTGCAGTCAGG
s panPan2.chrUn_NW_014024225v1     43841 49 +    105888 GGTCCCACAGGCTGGTGACAGCGCGACTGAAGGCCACGCTCCAGTCAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79664 49 +    417917 GGTCCCACAGGCTGGTGACAGCGCGACTGAAGGCCACGCTCCAGTCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78351 48 + 149150640 GGTCCCACAGGCTGGTGACAG-GTGGCTGAAGGCCACGTTCCAGTCAGG
i rheMac8.chrX                 I 41 I 220
s macFas5.chr7                 171667368 48 - 171882078 GGTCCCACAGGCTGGTGACAG-GTGGCTGAAGGCCACGTTCCAGTCAGG
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=22532.000000
s hg38.chrX_KI270880v1_alt         12219 64 +    284869 -AGGCCGCCCCACGTGTGACCCCGGGTCTTCCC----GCCCCGCCCTGACCCAGGGTCCTGGCCTTCCA
s panPan2.chrUn_NW_014024225v1     43890 64 +    105888 -AGGCCGTCCCACGTGTCACCCCGGGTCTTCGC----GCCCCCTCCTGACCCAGGGTCCTGGCCTTCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           79713 64 +    417917 -AGGCCGTCCCACGTGTGACCCCAGGTCTTCGC----GCCCACTCCTGACCCAGGGTCCTGGCCTTCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667416 69 - 171882078 GCGCCGGCCTCACGTGTGACCCTGGTTCCTCCCCTCTGTCCCTTCCCCACCCCCAGTCCGTGCCCCCCA
i macFas5.chr7                 C 0 I 113
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=9771.000000
s hg38.chrX_KI270880v1_alt         12283 36 +    284869 CGTGTGACCCTGGTTTTGGCACCTGTCCCCGCCCCC
s panPan2.chrUn_NW_014024225v1     43954 36 +    105888 CGTGTGACCCTGGTTCCGGCACCTGTccccgccccc
i panPan2.chrUn_NW_014024225v1 C 0 I 250
s gorGor5.CYUI01015925v1           79777 36 +    417917 CGTGTGACCCTGGTTCCGGCACTTGtccccgccccc
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171667485 113 - 171882078 I

a score=10793.000000
s hg38.chrX_KI270880v1_alt         12319 193 +    284869 -CCGTCCTGTTCCCCTCCTCTCTCCCTGCCCCCCCTCCCCTCTCCCCGCCCCCCCTCCCCCCTCCCCCCTCCCCGTCCCCCCTCCCCGTCCCCCCTCCCCCCCTCCCCGTCCC-CCCTCCCCCTCCCCCCGTCCCCCGTCCCCCCTCCCCCCGTCCCCCGTCCCCCCTCCCCCTCTCCCCGTCCCCCCCTCCCCC
s gorGor5.CYUI01015925v1           79813 178 +    417917 tctgtcctgttcccctcctctctccccatgccccctcctctttccccatctcccct---ccctcccccgacccc--cctccctcccccgacccccttcccctctccccgtcccgcccttcccctctccccgtccccccttcccc---------tcccccgtcccccctccccctccccc---cccgcccttcccc
i gorGor5.CYUI01015925v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e macFas5.chr7                 171667485 113 - 171882078 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=573.000000
s hg38.chrX_KI270880v1_alt         12512 2 +    284869 TC
s gorGor5.CYUI01015925v1           79991 2 +    417917 tc
i gorGor5.CYUI01015925v1       C 0 I 1087
s macFas5.chr7                 171667598 2 - 171882078 TC
i macFas5.chr7                 I 113 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=6181.000000
s hg38.chrX_KI270880v1_alt         12514 33 +    284869 TCCCCGTCCCCCCCTCCCCCTCTCCCCGTCCCC
s gorGor5.CYUI01015925v1           81080 33 +    417917 tccccgtcccccccttcccctctccccgtcccc
i gorGor5.CYUI01015925v1       I 1087 C 0
s macFas5.chr7                 171667600 30 - 171882078 TCCCCA---CCCCCCTCCTGTCTCCCCACCCCC
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=13874.000000
s hg38.chrX_KI270880v1_alt         12547 40 +    284869 CCCTCCCCCTCTCCCCGTCCCCCCCTCCCCCTCTCCCCGT
s panTro5.chrX                    117773 40 + 155549662 CCCTTCCTCTCTCCCTGTCCCCCCCTTGCTCTCTCCCCGT
i panTro5.chrX                 N 0 C 0
s gorGor5.CYUI01015925v1           81113 39 +    417917 cccttcccctctccccgt-ccccccttcccctctccccgt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667630 37 - 171882078 ---CTCTTCTCTCCCCACCGCTCCCCTCCTCTCTCCACGC
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e rheMac8.chrX                     78399 220 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=56935.000000
s hg38.chrX_KI270880v1_alt         12587 71 +    284869 CCCATCTCTCCCTTGAGTCCTTGGG--TGGTCCTGGCCGCACGCCTACCTGGC-GGCCCCATCCCTCCCTTCAG
s panTro5.chrX                    117813 72 + 155549662 CCCATCTCTCCCTTGAGTCCTTGGG--TGGTCCTGGCCGCACGCCTACCTGACTGGCCCCATCCCTCCCTTCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1           81152 71 +    417917 cccttctctccCTTGAGTTCTTGGG--TGGTCCTGGCCGCACGCCTACCTGGC-GGCCCCATCCCTTCCTTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78619 74 + 149150640 CCCATCTCTCCCTTGAGTCCTTGGGTTTGGTCCTGGCCACACTCCTACCTGACTGGCCCCATCCTGTCCTTCAG
i rheMac8.chrX                 I 220 C 0
s macFas5.chr7                 171667667 74 - 171882078 CCCATCTCTCCCTTGAGTCCTTGGGTTTGGTCCTGGCCACACTCCTACCTGACTGGCCCCATCCTGTCCTTCAG
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          143905 495 +   1230721 M
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=57119.000000
s hg38.chrX_KI270880v1_alt         12658 47 +    284869 GGCAGGGACAGCCGATGCCCCGCACCTCCCCCATCGCTTTTCTGCCT
s panTro5.chrX                    117885 47 + 155549662 GGCAGGGACAGCCGATGCCCTGCACCTCCCCCTTCACTTTTCTGCCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1           81223 47 +    417917 GGCAGGGACAGCCAATGCCCGGCACCTCCCCCTTCGCTTTTCTGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78693 47 + 149150640 GGCAGGGACAGCCGATGCCCTCCACCTCCCCCATCGCTTTTGTGCCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171667741 47 - 171882078 GGCAGGGACAGCCGATGCCCTCCACCTCCCCCATCGCTTTTGTGCCT
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          144407 47 +   1230721 GGCAGGCATAGCCGATGCCATCCACCTCCCCCATCGCTTTTCTGCCT
i colAng1.NW_012115411v1       M 495 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I
e panPan2.chrUn_NW_014024225v1     43990 250 +    105888 I

a score=56635.000000
s hg38.chrX_KI270880v1_alt         12705 31 +    284869 CTGCCCCCTCCCCACATAGGCCTGGCGTCCC
s panTro5.chrX                    117932 31 + 155549662 CTGCCCCCTCCCCACATAGGCCTGGCGTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44240 31 +    105888 CTGCCCCCTCCCCACATAGGCCTGGCGTCCC
i panPan2.chrUn_NW_014024225v1 I 250 C 0
s gorGor5.CYUI01015925v1           81270 31 +    417917 CCGCCCCCTCCCCACATAGGCCTGGCATCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78740 31 + 149150640 CCGCCCCCTCCCCACGTAGGCCCGGCGTCCC
i rheMac8.chrX                 C 0 I 56
s macFas5.chr7                 171667788 31 - 171882078 CCGCCCCCTCCCCACGTAGGCCCGGCGTCCC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          144454 31 +   1230721 CTGCCCCCTCCCCACGTACGCCTGGCGCCCC
i colAng1.NW_012115411v1       C 0 I 53
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=3980.000000
s hg38.chrX_KI270880v1_alt         12736 17 +    284869 --------------CTGGACTCCTGTAGGCC------------------------
s panTro5.chrX                    117963 17 + 155549662 --------------CTGGACTCCTGTAGGCC------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44271 17 +    105888 --------------CTGGACTCCTGTAGGCC------------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81301 17 +    417917 --------------CTGGACTCCTGTAGGCC------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667819 55 - 171882078 GTAGGCACCACAGCCTGGGGAGTCGGGGGCACCGCGGAGCCCTAAGCATCAGGGT
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          144485 53 +   1230721 I
e rheMac8.chrX                     78771 56 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=-3786.000000
s hg38.chrX_KI270880v1_alt         12753 1 +    284869 -G
s panTro5.chrX                    117980 1 + 155549662 -C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44288 1 +    105888 -C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81318 1 +    417917 -C
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171667874 1 - 171882078 A-
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          144538 1 +   1230721 G-
i colAng1.NW_012115411v1       I 53 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e rheMac8.chrX                     78771 56 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=132949.000000
s hg38.chrX_KI270880v1_alt         12754 82 +    284869 AGCTGTAGTCTTAAGAAGTCAGTGTGTCCCGCAGCCCTAAAAGGTTGGG-GTACCCTCCGGCCGTCATGTTCTGGGCACCCTA
s panTro5.chrX                    117981 82 + 155549662 AGCTGTAGACTTAAGAAGTCAGTGTGTCCCACAGCCCTAAAAGGTTGGG-GTACCCTCCAGCCGTCATGTTCTGGGCACCCTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44289 82 +    105888 AGCTGTAGACTTAAGAAGTCAGTGTGTCCCACAGCCCTAAAAGGTTGGG-GTACCCTCCAGCCGTCATGTTCTGGGCACCCTA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81319 82 +    417917 AGCTGTAGTCTTAAGAAGTCAGTGTGTCCCACAGCCCTGAAAGGTTGGG-GTACCCTCCGGCCGTCATGTTCTGGGCACCCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78827 81 + 149150640 AGCCGTGGTCTTAAGAAGTCAGTGTGTCTCACAGTCCCAAAAGGTTGGG-GTACCC-CCGGCCCTCATGTTCAGAGCACTCTA
i rheMac8.chrX                 I 56 C 0
s macFas5.chr7                 171667875 81 - 171882078 AGCCGTGGTCTTAAGAAGTCAGTGTGTCTCACAGTCCCAAAAGGTTGGG-GTACCC-CCGGCCCTCATGTTCAGAGCACCCTA
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          144539 82 +   1230721 AGCCGTGGTCTTAAGAAGTCAGTGTGTCTCACCGTCCTAAAAGGTTGGGTTTCCCC-CCAGCCGTCATGTTCAGGGCACCCTA
i colAng1.NW_012115411v1       C 0 I 124
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=73595.000000
s hg38.chrX_KI270880v1_alt         12836 49 +    284869 TAGTCCTAAAGGGTCAGGGCACCCCATGGCTGTCATGTTTAGAGTACCC
s panTro5.chrX                    118063 49 + 155549662 TAGTCCTAAAGGGTCAGGGTACCCCCTGGCTGTCATGTTTAGAGTACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44371 49 +    105888 TAGTCCTAAAGGGTCAGGGTACCCCCTGGCTGTCATGTTTAGAGTACCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81401 49 +    417917 TAGTCCTAAAGGGTCAGGGTACCCCATGGCTGTCATGTTTAGAGTACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78908 49 + 149150640 CGGTCCCACAGGGTTGGGGTGCCCCATGGCCCTCATGTTCAGGGTACCC
i rheMac8.chrX                 C 0 I 41
s macFas5.chr7                 171667956 49 - 171882078 CGGTCCCACAGGGTTGGGGTGCCCCATGGCCCTCATGTTCAGGGTATCC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          144745 49 +   1230721 TAGCCCTAAAGGGTTGGGGTACCCCACGGCCCTGATGTCCAGGGCACCC
i colAng1.NW_012115411v1       I 124 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=4860.000000
s hg38.chrX_KI270880v1_alt         12885 18 +    284869 CATAGTCCTAAAG--------------GATT-----------------------------------------------------G
s panTro5.chrX                    118112 18 + 155549662 CGTAGTCCTAAAG--------------GATT-----------------------------------------------------G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44420 18 +    105888 CGTAGTCCTAAAG--------------GATT-----------------------------------------------------G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81450 71 +    417917 CGTAGTCCTAAAG--------------GATTGGGGGCACCCCACATCCCTGGTGTTCAGGGCACCCCGTAGTCCTAAAGGATTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171668005 32 - 171882078 TACGGTATTAAAGTTGGGGTACCCCACGGCT-----------------------------------------------------G
i macFas5.chr7                 C 0 I 9
s colAng1.NW_012115411v1          144794 18 +   1230721 CACAGTCCTAAAG--------------GGTT-----------------------------------------------------G
i colAng1.NW_012115411v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e rheMac8.chrX                     78957 41 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=300183.000000
s hg38.chrX_KI270880v1_alt         12903 180 +    284869 GGGCACCCCACATCCCCGGTGTTCAGGGCATGTCATAGTCCTAAAAGGTCGGGGTACCCCTGGATGAGGGGCGGTCAGGAGGGTCAGGGCCCGGGTGGACATCCTGTCATCCTACCCTGTGGGCCATGCCCTGTGTCCCTGACTCTGACATTGGGTGAGGTGAGGACGGGGCAGGTTTCC
s panTro5.chrX                    118130 180 + 155549662 GGGAACCCCACATCCCTGGTGTTCAGGGCACCTCATAGTCCTAAAAGGTCAGGGTACCCCCAGATGAGGGGCGGTCAGGAGGGTCAGGGCCCGGGTGGACATCCTGTCATCCTACCCTGTGGGCCATGCCCTGTGTCCCTGACTCTGACATTGGGTGAGGTGAGGACGGGGCAGGTTTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44438 180 +    105888 GGGCACCCCACATCCCTGGTGTTCAGGGCACCTCGTAGTCCTAAAAGGTCGGGGTACCCCCGGATGAGGGGCGGTCAGGAGGGTCAGGGCCCGGGTGGACATCCTGTCATCCTACCCTGTGGGCCATGCCCTGTGTCCCTGACTCTGACATTGGGTGAGGTGAGGACGGGGCAGGTTTCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81521 179 +    417917 GGGCACCCCACATCCCTGGTGTTCAGGGCACCTCATAGTCCTAAAAGGTCGGGGTACCCC-GGATGAGAGGCGGTCAGGAGGGTCAGGGCCTGGGTGGACATCCTGTCATCCTACCCTGTGGGCCACGCCCTGTGTCCCTGACTCTGACATTGGGTGAGGTGAGGACGGGGCAGGTTTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     78998 180 + 149150640 GGGCACCCCACAGCCCTAATGTCCAGGGCACCCCACAGTCCTGAAGGGTCAGGGCACCCCCGGATGAGGGGAGGTCAGGAGGGTCAGTGCCCGGGTGGACGTCCTGTCACCCCACCCTGTGAGGCACGGCCCGTGTCCCTGACTCCGACGTTGGGGGAGGTGAGCACGGAGCAGGTTCCC
i rheMac8.chrX                 I 41 C 0
s macFas5.chr7                 171668046 180 - 171882078 GGGCACCCCACAGCCCTAATGTCCAGGGCACCCCACAGTCCTGAAGGGTCAGGGCACCCCCGGATGAGGGGAGGTCAGGAGGGTCAGTGCCCGGGTGGACGTCCTGTCACCCCACCCTGTGAGGCACGGCCCGTGTCCCTGACTCCGACGTTGGGGGAGGTGAGCACGGAGCAGGTTCCC
i macFas5.chr7                 I 9 C 0
s colAng1.NW_012115411v1          144812 180 +   1230721 GGGTACCCCATGGCCCTCATGTCCAGGGCACCTCACAGTCCCGAAGGGTCAGGGCACCCCTGGATGAGGGGAGGTCAGGAGGGTCACGGCCAGAGTGGACGTCCTGTCACTGCACCCTGTGAGGCACGGCCTGTGTCCCTGACTCTGACGTTGGGGGAGGTGAGCACGGAGCAGGTTTCC
i colAng1.NW_012115411v1       C 0 I 22
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=14126.000000
s hg38.chrX_KI270880v1_alt         13083 16 +    284869 ATGGTACAtttattta
s panTro5.chrX                    118310 16 + 155549662 GTGGCACAtttattta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44618 16 +    105888 GTGGCACAtttattta
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           81700 16 +    417917 GTGGCACAtttattta
i gorGor5.CYUI01015925v1       C 0 I 431
s rheMac8.chrX                     79178 15 + 149150640 GTGGCACA-ttattta
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171668226 11 - 171882078 GTGGCACA-----tta
i macFas5.chr7                 C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          144992 22 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=4095.000000
s hg38.chrX_KI270880v1_alt         13099 3 +    284869 ttt
s panTro5.chrX                    118326 3 + 155549662 ttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44634 3 +    105888 ttt
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82147 3 +    417917 ttt
i gorGor5.CYUI01015925v1       I 431 C 0
s rheMac8.chrX                     79193 3 + 149150640 ttt
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171668237 3 - 171882078 ttt
i macFas5.chr7                 C 0 I 1
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          144992 22 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=433170.000000
s hg38.chrX_KI270880v1_alt         13102 272 +    284869 ttt--gagacggagtctcgctctgtcgcccaggctggagtgcagtggtgtgatctcggctccctgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggatcacaggcgcccgtcacc------gcgcccggctaatttttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctctaactcctgacctc--gtgatctgcctgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
s panTro5.chrX                    118329 275 + 155549662 atttagagacagagtctcgctctgtcgcccaggctggagtgcagtggtgagatctcggctcactgcaacctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggattacagcggcccgccacc------acgcctggctaatttttt-gtatttttagtagagacggggtttcaccatgttagccaggctggtctcgatctcctgacctcaggggatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44637 275 +    105888 atttagagacagagtctcgctctgctgcccaggctggggtgcagtgctgaaatctcagctcactgcaacctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggattacaggcacccgccacc------acgcctggctaatttttt-gtatttttagtagagacggggtttcaccatgttagccaggctggtctcgatctcctgacctcaggcgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82150 273 +    417917 ttt--gagacagagtctcgctctgtcgcctaggcgggagtgcagtggcacgatctcagctcactgcaagcttcacttcccgggttcacgccatcctcctgcctcagcctcccgagtagctgggactacaggcacctgccacc------gtgcccggctaatttttt-gtgtttttagtagagacggggtttcaccgtgttggccaggctggtctcaatctcctgacctcaagcgatccgcccgccttggcctcccaaagtgctgggattacaggcatgagcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     79197 272 + 149150640 ttt--gagacggagtctcgctctgtcgcccaggctggagtgcagtggttcgatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagtttcccatgtagctggaattacaagtgccttccacc------acacctggccagttttt--gtatttttagtagagacgcggtttcaccgtgttggccaacatggtctcgatctcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
i rheMac8.chrX                 I 1 I 239
s macFas5.chr7                 171668241 272 - 171882078 ttt--gagacggagtctcgctctgtcgcccaggctggagtgcagtggttcgatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagtttcccatgtagctggaattacaagtgccttccacc------acacctggccaatgttt--gtatttttagtagagacggggtttcaccgtgttggccaagatggtctccatctcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
i macFas5.chr7                 I 1 C 0
s colAng1.NW_012115411v1          145014 278 +   1230721 ttt--gagacagagtctcgctctgtcgctgaggctggagtgcggtggcgtgatctcggctcactgcaaccgctgccttctgggttcaagtgattcccctgcctcagtttcccatgtagctgggatgacaggtgaccgtgaccacgacgacgcctggctaattttt--gtatttttagtagagacagggtttcaccaggttgaccaggctggtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagcc
i colAng1.NW_012115411v1       I 22 I 550
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=6333.000000
s hg38.chrX_KI270880v1_alt         13374 12 +    284869 cctgtgcctggT
s panTro5.chrX                    118604 12 + 155549662 accttgccTAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44912 12 +    105888 accttgccTAGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82423 12 +    417917 accttgcctggc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171668513 12 - 171882078 accacgcccggc
i macFas5.chr7                 C 0 I 181
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           83885 4456 -   1025902 I
e colAng1.NW_012115411v1          145292 550 +   1230721 I
e rheMac8.chrX                     79469 239 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=44942.000000
s hg38.chrX_KI270880v1_alt         13386 50 +    284869 GGGACCCCAGTTTTCTATTAAAAAAAggccgggcgcggtggctcacacct
s panTro5.chrX                    118616 48 + 155549662 GGGACCCCAGTTTTCTATTAAAAAA--GCGAggcgcggtggctcacatct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44924 48 +    105888 GGGACCCCAGTTTTCTATTAAAAAT--gtcaggcgcggtggctcacatct
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82435 46 +    417917 GGGACCC--GTTTTCTATTAAAAAg--gccgggcacagtggctcacgcct
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171668706 46 - 171882078 gggggcccagttttctattaaag----gccgggtgcagtgactcacgcct
i macFas5.chr7                 I 181 C 0
s cerAty1.NW_012001098v1           88341 46 -   1025902 GGGGCCCCAGTTTTCTATTAAAg----gccacgtgcagtgactcacgcct
i cerAty1.NW_012001098v1       I 4456 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          145292 550 +   1230721 I
e rheMac8.chrX                     79469 239 + 149150640 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=427246.000000
s hg38.chrX_KI270880v1_alt         13436 293 +    284869 gtcatcccagcattttgggaggccgaggcgggtggatcacttgaggtcagttgtttgagaccatcctggccaacatggagaaaccccgtctcaactgaaaatacaaaaattagccgggcgtggtggtggcgggcgcctgtgatcccagctacgcggg-aggctgaggcaggagaatcgcttgaacccagaaggcagaggctgcagtgagccgagatcgcaccatggcagtccagcctgggcga-----------------------caaACAAAAAACAGGTACAGCATAGAGTCTGCCTTTCTGGAATCACTATAG
s panTro5.chrX                    118664 290 + 155549662 gtcatcccagcattttgggaggctgaggcgggtggatcacttgaggtcagttgtttgagaccatcctggccaacacggagaaaccccgtctcaactgaaaatagaaaaattagccgggtgtggtgg---agggcacctgtgatcccagctactcggg-aggctgaggcaggagaatggcttgaacccagaaagcagaggctgaagtgagccgagatcgcgccactgcactccagcctgggtga-----------------------caaaCAGAAAACAGGCACAGCATAGAGTCTGCCTTTCTGGAATCGCTATAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     44972 290 +    105888 gtcatcccagcattttgggaggctgaggcgggtggatcacttgaggtcagttgttagagaccatcctggccaacacggagaaaccccgtctcaactgaaaatagaaaaattagccgggtgtggtgg---agggcacctgtgatcccagctactcggg-aggctgaggcaggagaatggcttgaacccagaaagcagaggctgaagtgagccgagatcgcgccactgcactccagcctgggtga-----------------------caaaCAGAAAACAGGCACAGCATAGTGTCTGCCTTTCTGGAATCGCTATAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82481 307 +    417917 gtaatcccagcacttttggaggctgaggcgggtggatctcttgaggtcaggagttcgagaccagcccggccaacacggagaaaccccgtctcgactgaaaatacaaaaattagccgggcatggtgg---agggcgcctgtagtcccagctactcgggaaggctgaggcaggagaatcgcttgaacccagaaggcagaggctgcagtgagccgagatcacaccattgcactccagcctgggcgacagcgtgaga--ccgtct-----caaacaaaagaCAGGCACAGCATGGAGTTTGCCTTTCTGGAATCGCTATAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     79708 309 + 149150640 gtcatcccagcactttgggaggtcgaggcgggcagatcac--gaggtcaggagttcgagaccagcctggccaacacggtgaaaccccgtgtctactaaaaatacaaaaatgagccgggcgcggtgg---cgtgcacctgtaatcccagctactcggg-aggccgaggcaggaaaatgccgggaacccgggaggcggaggttgcggtgagctgagatcacaccactgcactccagcctgggccacagagcgagactccgtctcacaacagacaaaag--aGGTGCAGCGTGGAGCCTGCCCGTTTGGAATCGCTGTGG
i rheMac8.chrX                 I 239 C 0
s macFas5.chr7                 171668752 307 - 171882078 gtcatcccagcactttgggaggtcgaggcgggcagatcac--gaggtcaggagttcgagaccagcctggccaacacggtgaaaccccgtgtctactaaaaatacaaaaatgagccgggcgcggtgg---cacg-gcctgtagttccagctactcggg-aggccgaggcaggaaaatgcc-ggaacccgggaggcagaggttgcggtgagccgagatcacctcactgcactccagcctgggccacagagcgagactccgcctcacaacagacaaaag--aGGTGCAGCGTGGAGCCTGCCCGTTTGGAATCGCTGTGG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           88387 299 -   1025902 gtcatcccagcactttgggaggccgagacgggcagatcac--gaggtcaggagttcgagaccagcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaatgagccgggcgaggtgg---cgggcgcctgtaatcccagctactgggg-aggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccg----------actgcactccagcctgggccacagagcgagaatccgtctcaaaacacacaaaag--aGGTGCAGCGTGGAGCCTGCCCTTTTGGAATCGCTGTGG
i cerAty1.NW_012001098v1       C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          145292 550 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=49622.000000
s hg38.chrX_KI270880v1_alt         13729 33 +    284869 CTAGGGGGCTGCCTCCCT-AAGCCCCACTTCTCT-------
s panTro5.chrX                    118954 33 + 155549662 CTAGGGGGCTGCCTCCCT-AAGCCCCACTTCTCT-------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45262 34 +    105888 CTAGGGGGTTGCCTCCCTAAAGGCCCACTTCTCT-------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82788 33 +    417917 CTAGGGGGCTGCCTCCCT-AAGCCCCACTTCTCT-------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80017 33 + 149150640 CCAGGCGGCCGCTCCTCT-AAGCCCCGCTTCCTG-------
i rheMac8.chrX                 C 0 I 12
s macFas5.chr7                 171669059 33 - 171882078 CCGGGCGGCCGCTCCTCT-AAGCCCCGCTTCCTG-------
i macFas5.chr7                 C 0 I 12
s cerAty1.NW_012001098v1           88686 33 -   1025902 CCAGGCGGCCGCTCCTCT-AAGCCCCGCTTCCTG-------
i cerAty1.NW_012001098v1       C 0 I 12
s otoGar3.GL873584                 66685 40 +  11138919 CCAGGCAGCTGCTCCCCC-AGCCTCAGCTTCCTGCTCTCCT
i otoGar3.GL873584             N 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          145292 550 +   1230721 I
e macNem1.NW_012017243v1          122471 2705 +  25972781 I

a score=157970.000000
s hg38.chrX_KI270880v1_alt         13762 63 +    284869 -GAGTCTCCTGCA-AGGTTTGTGTGAGTGCCTGCGGGCCGAGGCCCTGGCGAGGAGGACGGGGGC
s panTro5.chrX                    118987 63 + 155549662 -GAGTCTCCTGCA-AGGTTTGTGTGAGTGCCTGGGGGCCGAGGCCCTGGCGAGGAGGACGGGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45296 63 +    105888 -GAGTCTCCTGCA-AGGTTTGTGTGAGTGCCTGGGGGCCGAGGCCCTTGCGAGGAGGACGGGGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82821 63 +    417917 -GAGTCTCCTGCA-AGGTTTGTGTGAGTGCCTGGGGACCGAGGCCCTGGTGAGGAGGACGGGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80062 63 + 149150640 -GAGTGTCCTGCG-GGGTTTGTGTGAGTCCCTGGGGGCCGAGGCCCTGGCGGGGAGGACGGGGGC
i rheMac8.chrX                 I 12 I 9
s macFas5.chr7                 171669104 63 - 171882078 -GAGTGTCCTGCG-GGGTTTGTGTGAGTCCCTGGGGGCCGAGGCCCTGGCGGGGAGGACGGGGGC
i macFas5.chr7                 I 12 C 0
s macNem1.NW_012017243v1          125176 63 +  25972781 -GAGTGTCCTGCG-GGGTTTGTGTGAGTCCCTGGGGGCCGAGGCCCTGGCGGGGAGGATGGGGGC
i macNem1.NW_012017243v1       I 2705 I 11
s cerAty1.NW_012001098v1           88731 63 -   1025902 -GAGTGTCCTGCG-GGGTTTGTGTGAGTCCCTGGGGGCCGAGGCCCTGGCGGGGAGGACGGGGGC
i cerAty1.NW_012001098v1       I 12 I 12
s otoGar3.GL873584                 66725 61 +  11138919 GACCCATCCTGTGAAGGCCCATGTGAGGGCCTAGGGGCAGCAGCTGCT----GGAAGCTGAGAGC
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          145292 550 +   1230721 I

a score=4608.000000
s hg38.chrX_KI270880v1_alt         13825  70 +    284869 TCGGGGGCCTCTGTGACCTGGGGGAGGGGCTGTCGCGTCCCCCTGTGGTC-GC---------------------GTCCCCCTGTGGTCGC---------------------GT
s panTro5.chrX                    119050 112 + 155549662 TCGGGGGCCTCTGTGACCTGGGGGAGGGGCTGCTGCGTCCCCCTGTGGGC-GCACCTGTGGGCGGGGCCGCTGCGTCCCCCTGTGGGCGCACCTGTGGGCGGGGCCGCTGCGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45359 112 +    105888 TCGGGGGCCTCTGTGACCTGGGGGAGGGGCTGCTGCGTCCCCCTGTGGGC-GCACCTGTGGGCGGGGCCGCTGCGTCCCCCTGTGGGCGCACCTGTGGGCGGGGCCGCTGCGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82884  37 +    417917 TCGGGGGCCTCTGTGACCT-GGGGAGGGGCTGCTGT---------------------------------------------------------------------------GT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171669167  10 - 171882078 --------CTCCGTGTCC-----------------------------------------------------------------------------------------------
i macFas5.chr7                 C 0 C 0
s otoGar3.GL873584                 66786  51 +  11138919 -TAAGGGTCCCTGTGGCAT--GGGAGGGGCTG-TGCATCACCCCATTGTCTGCAT----------------------------------------------------------
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           88794  12 -   1025902 I
e colAng1.NW_012115411v1          145292 550 +   1230721 I
e rheMac8.chrX                     80125   9 + 149150640 I
e macNem1.NW_012017243v1          125239  11 +  25972781 I

a score=3730.000000
s hg38.chrX_KI270880v1_alt         13895 3 +    284869 CCC-
s panTro5.chrX                    119162 3 + 155549662 CCC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45471 3 +    105888 CCC-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82921 3 +    417917 CCC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80134 3 + 149150640 CCC-
i rheMac8.chrX                 I 9 C 0
s macFas5.chr7                 171669177 2 - 171882078 -CC-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          125250 3 +  25972781 CCC-
i macNem1.NW_012017243v1       I 11 C 0
s otoGar3.GL873584                 66837 3 +  11138919 -CCA
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           88794 12 -   1025902 I
e colAng1.NW_012115411v1          145292 550 +   1230721 I

a score=353589.000000
s hg38.chrX_KI270880v1_alt         13898 200 +    284869 CCTGTGGTCGCACCTGTGGGC------------------------------------------TG-TCGGCCGTAGGTACCGCTCAGGCCCGTCCTGGTTGCGGGGCAAGGGCCTGTGTGTTGGGGGCTGAGAGACGGGGCCTAGAAGCCCTGTTGTGGGGAGGCCTGTGGGGGGCT-TGTCCAAGCGGGACCTCCTATCCCTGCACCACTGGGGTCGTCCCCCCCCGACGGGGCCTCGTCCCC
s panTro5.chrX                    119165 221 + 155549662 CCTGTGGGCGCACCTGTGGGCGGGGCCGCTGCGTCC--CTGTGGGCGCACCTGTGGGAGGGGCTG-TCGGCCGTAGGTACCGCTCAGGCCCGTCTTGGTTGCAGGGCAAGGACCTGTGC--TGGGGGCTGAGGGACTGGGTCTAGAAGCCGTGTTGTGGGGAGGCCTGCGGGCGTCTATGTCCAAGCGGGACCTCCTGTCCCTGCACCGCTGGGGTCGTCCCCCCC------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45474 225 +    105888 CCTGTGGGCGCACCTGTGGGCGGGGCCGCTGCGTCCCTCTGTGGGCGCACCTGTGGGAGGGGCTG-TCGGCCGTAGGTACCGCTCAGGCCCGTCTTGGTTGCAGGGCAAGGACCTGTGTGCTGGGGGCTGAGGGACTGGGTCTAGAAGCCGTGTTGTGGGGAGGCCTGCGGGCGTTTATGTCCAAGCGGGACCTCCTGTCCCTGCACCGCTGGCCTCGTCCCCCCC------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           82924 182 +    417917 CCTGTGGTCGCACCTGTGGGC------------------------------------------TG-TTGGCCATAGGTACCGCTCAGGCCGGTCTTGGTTGCAGGGCAAGGGCCTGTGTGCTGGGGGCTGAGGGACCGGGCCTAGAAGCCCTGTTGTGGGGAGGCCTGTGGGGGGCT-TGTCCAAGCGGGACCTCCTGTCCCTGCACCGCTGGGGTCGTCCTTCCC------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80137 197 + 149150640 CCCGTGGTCGCACCTGTGAGC------------------------------------------TG-CCAGCCGTAGGTACCGCTCAGGCCCGCCTTGGTTGCGGGGCAGGGGTCTGTGTGCTGGGGTTTGAGGGAC-GGGCCCGGGAGGCCTGTGG-GGGGAGGGCTGTGGGGGGCT-TGTCCGGGCGGGACCTGCTGTGCCTGCACCTCTGGGGTCTCCTTTCCC-GACGGGGCCTCGCCCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171669179 197 - 171882078 CCCGTGGTCGCCCCTGTGAGC------------------------------------------TG-CCGGCCGTAGGTACCGCTGAGGCCCGCCTTGCTTGCGGGGCAGGGGTCTGTGTGCTGGGGTTTGAGGGAC-GGGCCCGGGAGGCCTGTTG-GGGGAGGGCTGTGGGGGGCT-TGTCCGAGCGGGACCTGCTGTGCCTGCACCTCTGGGGTCTCCCTTCCC-GACGGGGCCTCGCCCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          125253 197 +  25972781 CCCGTGGTCGCACCTGTGAGC------------------------------------------TG-CCGGCCGTAGGTACCGCTCAGGCCAGCCTTGGTTGCGGGGCAGGGGTCTGTGTGCTGGGGTTTGAGGGAC-GAGCCCGGGAGGCCTGTTG-GGGGAGGGCTGTGGGGGGCT-TGTCCGAGCGGGACCTGCTGTGCCTGCACCTCTGGGGTCTCCCTTCCC-GACAGGGCCTCGCCCCC
i macNem1.NW_012017243v1       C 0 I 5
s cerAty1.NW_012001098v1           88806 183 -   1025902 CCTGTGGTCGCACCTGTGAGC------------------------------------------TG-CCGGCCGTAGGTACCGCTCAGGCCCGCCTTGGTTGCGGGGCAGGGGTCTGTGTGCTGGGGGTTGAGGGACTGGGCCCGGGAGGCCTGT----------------GGGGGCT-TGTCCGAGCGGGACCTGCTGTCCCTGCACCTCTGGGGTCTCCCTTCCC-GACGGGGCCTCACCCCC
i cerAty1.NW_012001098v1       I 12 C 0
s otoGar3.GL873584                 66840 168 +  11138919 -----------------GGAC------------------------------------------TGTCCAACTGTGGGTGCTATCCAGGTCCATTTTCATTGCTGGGCAGGAGCCAGCATGGTGGGGGCCAAGGGTC-GGTTGCTAGGGCCTTGTTG-------------AGGGAGCC-CAACTGCACGGGGCCCATAGTTCCTGCATGTCCAGGGCTGTCTCGGCT-GCTGTGTGTCTGCCTT-
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          145292 550 +   1230721 I

a score=-8034.000000
s hg38.chrX_KI270880v1_alt         14098 25 +    284869 CCCGACGGGGCCTCG-----TCCCCCCCCA
s panTro5.chrX                    119386 21 + 155549662 ---AACAGGGCCTCG-----TCCCCCCC-A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45699 23 +    105888 --CAACAGGGCCTCG-----TCCCCCCCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83106 22 +    417917 ---GACAGGGCCTCA-----TCCCCTCCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80334  5 + 149150640 --------------------TCCTC-----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171669376  5 - 171882078 --------------------TCCTC-----
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           88989  5 -   1025902 --------------------TCCTC-----
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          145842 25 +   1230721 CCCGACGGGGCCTCGCCCCCTCCTC-----
i colAng1.NW_012115411v1       I 550 C 0
s otoGar3.GL873584                 67008 18 +  11138919 CACATCTTGCTCACG-----TCA-------
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e macNem1.NW_012017243v1          125450  5 +  25972781 I

a score=131639.000000
s hg38.chrX_KI270880v1_alt         14123 48 +    284869 TGGCTGCTCCGTGAGGTCAGGCAGC---GCCGCGCTGGGGAGATGGGGTGG
s panTro5.chrX                    119407 48 + 155549662 TGCCTGCTCCGTGAGGTCAGGCAGC---GCCGCGCTAGGGAGATGGGGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45722 48 +    105888 TGCCTGCTCCGTGAGGTCAGGCAGC---GCCGCGCTAGGGAGATGGGGTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83128 48 +    417917 TGGCTGCTCCGTGAGGTCAGGCAGC---ACCGCGCTAGGGAGATGGGGTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     80339 48 + 149150640 TGGCTGCTCCCTGAGGTCAGGCCGG---GCCACGCTGGGGAAACGGGGCGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171669381 48 - 171882078 TGGCTGCTCCCCGAGGTCAGGCCGG---GCCACGCTGGGGAAACGGGGCGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          125455 48 +  25972781 TGGCTGCTCCCCGAGGTCAGGCCGG---GCCACGCTGGGGAAACGGGGCGG
i macNem1.NW_012017243v1       I 5 C 0
s cerAty1.NW_012001098v1           88994 48 -   1025902 TGGCTGCTCCCTGAGGTCAGGCCGG---GCCGCGCTGGGGAAACGGGGCGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          145867 47 +   1230721 TGTCTGCTCCCTGAGGTCCGGCAGG---GCCGCGCTGGGGAAAC-GGGCGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 67026 42 +  11138919 --------CTGGGGGGAAAGGCGGCATTGTCACACTAGGAGGAC-AGGTGT
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=174280.000000
s hg38.chrX_KI270880v1_alt         14171 52 +    284869 CCC-----------------------------------TGTCCCCGCAGAGGGGCTGTTCTCTGGGGCAGAGGCGGGCAGGACCCCC
s panTro5.chrX                    119455 52 + 155549662 CCC-----------------------------------TGTCCCCGCAGAGGGGCTGTTCTCTGGGGCAGAGGCGGGCAGGACCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45770 87 +    105888 CCCTGTCCCCGCAGAGGGGCTGTTCTCTGGGGTGGCTCTGTCCCCGCAGAGGGGCTGTTCTCTGGGGCAGAGGCGGGCAGGACCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83176 52 +    417917 CTC-----------------------------------TGTCCATGCAGAGGGGCTGTTCTCTGGGGCAGAGGCGGGCAGGACCCCC
i gorGor5.CYUI01015925v1       C 0 I 43
s nomLeu3.chrX                     18684 52 + 141252148 CCC-----------------------------------CCCCCCCACAGAGGGGCTGTTCTCTGGGGCACAGGCGGGCAGGACCCCC
i nomLeu3.chrX                 N 0 C 0
s rheMac8.chrX                     80387 52 + 149150640 CTG-----------------------------------TGTCCCCACAGAGGGGCTGTTGTCTGGGGCACGGGTGGGCAGGACCCCC
i rheMac8.chrX                 C 0 I 7
s macFas5.chr7                 171669429 50 - 171882078 CTG-----------------------------------TGTCCCCGCGGAGGGGCTGTTGTCTGGGGCACGGGTGGGCAGGACCC--
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          125503 52 +  25972781 CTG-----------------------------------TGTCCCCACAGAAGGGCTGTTGTCTGGGGCACGGGTGGGCAGGACCCCC
i macNem1.NW_012017243v1       C 0 I 7
s cerAty1.NW_012001098v1           89042 52 -   1025902 CTG-----------------------------------TGTCCCCGCAGAGGGGCTGTTGTCTGGGGCACGGGTGGGCAGGACCCCC
i cerAty1.NW_012001098v1       C 0 I 10
s colAng1.NW_012115411v1          145914 51 +   1230721 CTG-----------------------------------TGTCCCCGCAGAGGGGCTGCTCTCTGGGGCACGGGTGGGCAGGACCCC-
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 67068 44 +  11138919 CCC-----------------------------------TGGTC-CACGGAGGGGCTGTCCT-------AAAGGAGCAGAGGACCCCT
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=-2362.000000
s hg38.chrX_KI270880v1_alt         14223 25 +    284869 CGCCTTGTGGTCAGGACCCACTC----------------GT
s panTro5.chrX                    119507 40 + 155549662 -GCCTTGTGGTCAGGACCCACTCATGGTCAGACCCACTCGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45857 40 +    105888 -GCCTTGTGGTCAGGACCCACTCATGGTCAGACCCACTCGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83271 41 +    417917 CGCCTTGTATTCAGGACCCACTCATGGTCAGACCCACTCGT
i gorGor5.CYUI01015925v1       I 43 C 0
s nomLeu3.chrX                     18736 24 + 141252148 -CTCTTGTGGCCAGGACCCACTC----------------GT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171669479  6 - 171882078 --CCTCGC---------------------------------
i macFas5.chr7                 C 0 I 3
s colAng1.NW_012115411v1          145965  5 +   1230721 ---CTCAT---------------------------------
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 67112  8 +  11138919 ---CCCATGGT------------------------------
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89094 10 -   1025902 I
e rheMac8.chrX                     80439  7 + 149150640 I
e macNem1.NW_012017243v1          125555  7 +  25972781 I

a score=237202.000000
s hg38.chrX_KI270880v1_alt         14248 66 +    284869 GGCAGCCGGGGCTGCTGCGGGAGCTGATAACGGGGTGGAGACAGCTACGCCATGGTG---AGGACACGG
s panTro5.chrX                    119547 66 + 155549662 GGCGGCCGGGGCTGCTGTGGGAGCTGATACCAGGGTGGAGACAGCTACGCCATGGTG---AGGACACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45897 66 +    105888 GGCGGCCGGGGCTGCTGTGGGAGCTGATACCAGGGTGGAGACAGCTACGCCATGGTG---AGGACACGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83312 65 +    417917 GGCGGCAGGGGCTGCTGTGGGAGCTGATACCGGGGGGGAGACAGCTACGCCATGGTG---AGGACAC-G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18760 60 + 141252148 GGCGGCCAGGGCTGCTGTGGGAGCTGATACCGGGGTGGAGACAGCTACGCCGTGGTG---AG------G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     80446 66 + 149150640 GGCGGCCCGGGCTGCTGTGGGACCCGATACAGGGGTGGAGAGAGCTACGCCCTGGTG---AGGACACGG
i rheMac8.chrX                 I 7 I 62
s macFas5.chr7                 171669488 64 - 171882078 GGCGGCCCGGGCTGCTGTGGGACCCGATGCCGGGGTGGAGAGAGCTACGCCCTGGTG---AGGACAC--
i macFas5.chr7                 I 3 C 0
s macNem1.NW_012017243v1          125562 66 +  25972781 GGCGGCCCGGGCTGCTGTGGGACCCGATACCGGGGTGGAGAGAGCTACGCCCTGGCG---AGGACACGG
i macNem1.NW_012017243v1       I 7 I 177
s cerAty1.NW_012001098v1           89104 66 -   1025902 GGCGGCCCGGGCTGCTGTGGGACCCGATACCGGGGTGGAGAGAGCTACGCCCTGGTG---AGGACACGG
i cerAty1.NW_012001098v1       I 10 I 65
s colAng1.NW_012115411v1          145970 66 +   1230721 GGCGGCCAGGGCTGCTGTGGGACCCGATACCGGGGTGGAGAGAGCTGTGCCCTGGTG---AGGATACGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 67120 59 +  11138919 -------TGGGCTGTGGT-GTACCAGGTGCAGGGGTGGGGACAGCT--GCCCTTGTGGGCAGGACTCAG
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=2800.000000
s hg38.chrX_KI270880v1_alt         14314 1 +    284869 G
s panTro5.chrX                    119613 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45963 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83377 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18820 1 + 141252148 G
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171669552 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          146036 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 I 68
s otoGar3.GL873584                 67179 1 +  11138919 G
i otoGar3.GL873584             C 0 I 2382
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e rheMac8.chrX                     80512 62 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=16590.000000
s hg38.chrX_KI270880v1_alt         14315 19 +    284869 GCCGGGGGAGGCTGCAGCC
s panTro5.chrX                    119614 19 + 155549662 GCCGGGGGAGGCTGCAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45964 19 +    105888 GCCGGGGGAGGCTGCAGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83378 19 +    417917 GCCAGGGGAGGCTGCAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18821 14 + 141252148 GCCGGGGGAGGCTG-----
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171669553 17 - 171882078 GCCGGCG--AGCCGCAGCC
i macFas5.chr7                 C 0 M 630
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e colAng1.NW_012115411v1          146037 68 +   1230721 I
e rheMac8.chrX                     80512 62 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=14015.000000
s hg38.chrX_KI270880v1_alt         14334 22 +    284869 GACGGCCAGGCCCCCCTGCGGA
s panTro5.chrX                    119633 22 + 155549662 GACGGCCAGGCCCCCGTGAGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     45983 22 +    105888 GACGGCCAGGCCCCCGTGAGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83397 22 +    417917 GACGGCCAGGCCCCCGTGAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18835 16 + 141252148 ------CAAGCTGCCATGCGGA
i nomLeu3.chrX                 C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e colAng1.NW_012115411v1          146037 68 +   1230721 I
e rheMac8.chrX                     80512 62 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I
e macFas5.chr7                 171669570 630 - 171882078 M

a score=37538.000000
s hg38.chrX_KI270880v1_alt         14356 31 +    284869 AGACCCGGGGCAGCCCCCGCCTAGGAGCTGC
s panTro5.chrX                    119655 31 + 155549662 AGACCCGGGGCGGCCCCCGCCCAGGAGCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46005 31 +    105888 AGACCCGGGGCGGCCCCCGCCCAGGAGCTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83419 31 +    417917 AGACCCGGGGCAGCCCCCGCCCAGGAGCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18851 31 + 141252148 AGACCTGGGGCAGCCCCCAACCAGGAGCTGC
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                103034 31 +    465904 AGACTCGGGGCCGCCCCCACTCGGGCGCTGC
i saiBol1.JH378345             N 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e colAng1.NW_012115411v1          146037 68 +   1230721 I
e rheMac8.chrX                     80512 62 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I
e macFas5.chr7                 171669570 630 - 171882078 M

a score=21581.000000
s hg38.chrX_KI270880v1_alt         14387 28 +    284869 GCAGACACGTCCTGGGGC-----------------------------------CGCTGTTTCA
s panTro5.chrX                    119686 28 + 155549662 GCAGACGCGTCCTGGGGC-----------------------------------CGCTGTGCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46036 28 +    105888 GCAGACGCGTCCTGGGGC-----------------------------------CGCTGTGCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83450 28 +    417917 GCAGACACGTACTGGGGC-----------------------------------CGCTGTGCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18882 63 + 141252148 GCAGACAAGTCCTGGGGCTGGGGGGATGTGGCAGGGTGCTGTGCCACTCGGGGTGCTGTGCCA
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670206 43 - 171882078 GCGGACACGTCCTGGGGC--CCGGGGTGCGGTCGGG-----------------TGCTGTCCC-
i macFas5.chr7                 M 630 C 0
s saiBol1.JH378345                103065 37 +    465904 GTGGGCTCATCCGAGGGG---------ACGGCCGGG-----------------CGCCGTGACG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e colAng1.NW_012115411v1          146037 68 +   1230721 I
e rheMac8.chrX                     80512 62 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=2443.000000
s hg38.chrX_KI270880v1_alt         14415 2 +    284869 CC
s panTro5.chrX                    119714 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46064 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83478 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18945 2 + 141252148 CT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     80574 2 + 149150640 CC
i rheMac8.chrX                 I 62 C 0
s macFas5.chr7                 171670249 2 - 171882078 CG
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                103102 2 +    465904 CC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89170 65 -   1025902 I
e colAng1.NW_012115411v1          146037 68 +   1230721 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=113741.000000
s hg38.chrX_KI270880v1_alt         14417 41 +    284869 GAGACCCGAACGGCTGCT-CCCCAGGCTCTGAGTGGCGTGTG
s panTro5.chrX                    119716 41 + 155549662 GAGACCCGAACGGCTGCT-CCCCAGGCCCTGAGTGGCGTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46066 41 +    105888 GAGACCCGAACGGCTGCT-CCCCAGGCCCTGAGTGGCGTGTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83480 40 +    417917 GAGACCCGAACGGCTGCT--CCCGGGCTCTGAGTGGCGTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18947 36 + 141252148 GAGACCCAAACA---GCT-CCCCAGGCTCCGAGGGGCGTG--
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     80576 41 + 149150640 GAGACCAGAACGGCGGCT-GCCCAGGCTCCGGGTGGCGTGTG
i rheMac8.chrX                 C 0 I 250
s macFas5.chr7                 171670251 41 - 171882078 GAGACCAGAACGGCGGCT-GCCCAGGCTCCGGGTGGCGTGTG
i macFas5.chr7                 C 0 I 5
s cerAty1.NW_012001098v1           89235 41 -   1025902 GAGACCAGAACGGCGGCT-GCCCAGGCTCCGGGTGGCGTGTG
i cerAty1.NW_012001098v1       I 65 I 7
s colAng1.NW_012115411v1          146105 42 +   1230721 GAGACCAGAACGGCAGCTCCCCCAGGCTCTCAGTGGGGTGTG
i colAng1.NW_012115411v1       I 68 C 0
s saiBol1.JH378345                103104 39 +    465904 GAGACCCGAAC--CCGCT-CCCCGGGCCCCCAGTGAGGTTTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=102648.000000
s hg38.chrX_KI270880v1_alt         14458 63 +    284869 CGGCAGCCAAGGCTGGGGG-AGCTGTGACTTCT--ACA--------CGGCGCCAGGGCGCAGGGATCCCTGCTG
s panTro5.chrX                    119757 63 + 155549662 CGGCAGCCAAGGCTGGGGG-AGCTGTGACTTCT--ACA--------CGGTGCCGGGGTGGAGGGATCCCTGCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46107 63 +    105888 TGGCAGCCAAGGCTGGGGG-AGCTGTGACTTCT--ACA--------CGGTGCCGGGGTGGAGGGATCCCTGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83520 65 +    417917 CGGCAGCCAAGGCTGGGGG-AGCTGTGACTTCTACACA--------CGGTGCCGGGGTGGAGGGATCCCTGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     18983 64 + 141252148 -------CAAGGCTGGGGG-AGCTGTGAGATCT--ACAGAGGGTGGCGGGACGGGGAGGGGGGCATCCCTGCCC
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670297 66 - 171882078 CGGAGGCCGAGCCTGGGGGAAGCTGTGGCTTCT--ACAGA------GGGTGCCGGGGTTAGGGCATCGCTGCCC
i macFas5.chr7                 I 5 C 0
s cerAty1.NW_012001098v1           89283 65 -   1025902 CGGTGGCCAAGCCTGGGGG-AGCTGTGGCTTCT--ACAGA------GGGTGCCGGGGTGGGGGCATCGCTGCCC
i cerAty1.NW_012001098v1       I 7 C 0
s colAng1.NW_012115411v1          146147 65 +   1230721 CGGCGGCCGAGCCTGGGGG-AACTGTGGCTTCT--ACAGA------GGGTGCCGGCGTGGGGGCATCCCCGCCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                103143 37 +    465904 CGGCAGCCAGGCC---GGG-AGCGGTGGGGACT-------------GGGGGCCC--------------------
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125628 177 +  25972781 I

a score=159939.000000
s hg38.chrX_KI270880v1_alt         14521 46 +    284869 TGCCAGGGTCTGCCCGTGGGTCATGGGGAACGTGGTTCGAGGCCCC
s panTro5.chrX                    119820 46 + 155549662 TGCCAGGGTCTGCCCGTGGGTCATGGGGAACGTGGTTCGAGGCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46170 46 +    105888 TGCCAGGGTCTGCCCGTGGGTCATGGGGAACGTGGTTCGAGGCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83585 46 +    417917 TGCCAGGGTCTGCCCGTGGGTCGTGGGGAACGTGGTTCGAGGCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19047 46 + 141252148 TCCCGGGGTCTGCCCGTGGGTTATGGGGAATGTGGTTCGAGGCCCC
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670363 46 - 171882078 TGCCGGGGTCGGCCCGCGGGTCACGGGGAGCTGGGTTCGAGGCCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          125805 46 +  25972781 TGCCGGGGTCGGCCCGCGGGTCACGGGGAGCTTGGTTCGAGGCCCC
i macNem1.NW_012017243v1       I 177 C 0
s cerAty1.NW_012001098v1           89348 46 -   1025902 TGCCGGGGTCGGCCCGCGGGTCACGGGGAGCTTGGTTCGAGGCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          146212 46 +   1230721 TGCCGGGGTCTGCCCGTGGGTCACGGGGAACTGGGTTCGAGGCCCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                103180 44 +    465904 TCCCGGGGTCTGCCCG-GGGTC-CGGGGAAGGTGGTTCGAGGCCCC
i saiBol1.JH378345             C 0 I 238
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80617 250 + 149150640 I

a score=259621.000000
s hg38.chrX_KI270880v1_alt         14567 107 +    284869 TCTGCTGTAGCCACGCAGCAGCG-TCTTGCCGGGTGCGTGGCCTTGTCTGCAGGCTTGAGACCCAGCGGGGCCGTCTGTGCCACGTGGGGTCTGCGCCGGCCCAGGGG
s panTro5.chrX                    119866 105 + 155549662 T--GCTGTAGCCACGCAGCAGCG-TCTTGCCGGGTGAGTGGCCTTGTCTGCAGGCTTGAGACCCAGCAGGGCCGTTTGTGCCACGTGGGGTCTGCGCCGGCCGAGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46216 105 +    105888 T--GCTGTAGCCACGCAGCAGCG-TCTTGCCGGGTGAGTGGCCTTCTCTGCAGGCTTGAGACCCAGCAGGGCCGTTTGTGCCACGTGGGGTCTGCGCCGGCCGAGGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83631 107 +    417917 TCTGCTGTAGCCACGCAGCAGCG-TCTTGCCGGGTGAGCGGCCTTGTCTGCAGGCTTCAGACCCAGCAGGGCCGTTTGTGCCACGTGGGGTCTGCGCCGGCCCAGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19093 106 + 141252148 T--GCTGTAGCCACGCAGCCGCGTTCTTGCCACGTGAGCGGCCTTGTCTGCAGGCTTCAGACTCAGTGGGGTCATTTGTGCCACGTGGGGTCTGGACCGGCCCAGGGG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670409 103 - 171882078 C--GCGGGAGCCACGCAGCAGCG-TCTGGCCGGGTGAGGGGCCGCGTCTAC-GGCTTCGGGCTGGGCAGGGCCGTCTGTGCCACGCGGGGT-TGGGCCGGCCCGGGGG
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          125851 103 +  25972781 C--GCGGGAGCCACGCAGCAGCG-TCTGGCCGGGTGAGGGGCCGTGTCTGC-GGCTTCGGGCTGGGCAGGGCCGTCTGTGCCACGCGGGGT-TGGGCCGGCCCGGGGG
i macNem1.NW_012017243v1       C 0 I 32
s cerAty1.NW_012001098v1           89394 103 -   1025902 C--GCGGGAGCCACACAGCAGCG-TCT-GCCGGGTGAGGGGCCGTGTCTGC-GGCTTCGGGGTTGGCAGGGCCGTCTGTGCCACGCGGGGTCTGGGCCGGCCCGGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          146258 104 +   1230721 C--GCGGGAGCCACGCAGCAGCG-TCTTGCCGGGTGAGGGGCCGTGTCTGC-GGCTTCGGGCTGGGCAGGGCCGTTGGTGCCACGCGGGGTCTGGGCCGGCCCAGGGG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80617 250 + 149150640 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt         14674 1 +    284869 C
s panTro5.chrX                    119971 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46321 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83738 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19199 1 + 141252148 C
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670513 1 - 171882078 C
i macFas5.chr7                 I 1 C 0
s cerAty1.NW_012001098v1           89497 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 I 17
s colAng1.NW_012115411v1          146362 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125954 32 +  25972781 I

a score=22933.000000
s hg38.chrX_KI270880v1_alt         14675 21 +    284869 CGCACCGCTGTCAGCCACAGG
s panTro5.chrX                    119972 21 + 155549662 CGCATGGCTGTCAGCCACAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46322 21 +    105888 CGCACGGCTGTCAGCCACAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83739 21 +    417917 AGCATCTCCGTCAGCCGCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19200 21 + 141252148 CGCCTCTCTGTCAGCCACAGG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670514 20 - 171882078 TGCGTCCCCGTCACCCTCAG-
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          146363 21 +   1230721 TGCGTCCCCGTTAGCCACAGG
i colAng1.NW_012115411v1       C 0 I 15
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89498 17 -   1025902 I
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125954 32 +  25972781 I

a score=15458.000000
s hg38.chrX_KI270880v1_alt         14696 18 +    284869 ATGTGTGTCTCGGGGCTG
s panTro5.chrX                    119993 18 + 155549662 ATGTGTGTCTCGGGGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46343 18 +    105888 ATGTGTGTCTCGGGGCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83760 18 +    417917 ATGTGTGTGTCGGGGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19221 18 + 141252148 ATGTGCGTCTCAGGGCTG
i nomLeu3.chrX                 C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89498 17 -   1025902 I
e colAng1.NW_012115411v1          146384 15 +   1230721 I
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125954 32 +  25972781 I
e macFas5.chr7                 171670534  0 - 171882078 C

a score=3755.000000
s hg38.chrX_KI270880v1_alt         14714 3 +    284869 CGG
s panTro5.chrX                    120011 3 + 155549662 CAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46361 3 +    105888 CAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83778 3 +    417917 CAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19239 3 + 141252148 CAG
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1          146399 3 +   1230721 CAG
i colAng1.NW_012115411v1       I 15 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89498 17 -   1025902 I
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125954 32 +  25972781 I
e macFas5.chr7                 171670534 0 - 171882078 C

a score=18280.000000
s hg38.chrX_KI270880v1_alt         14717 12 +    284869 CAGACGGGGCTT
s panTro5.chrX                    120014 12 + 155549662 CAGACGGGGCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46364 12 +    105888 CAGACGGGGCTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83781 12 +    417917 CAGATGGGGCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19242 12 + 141252148 CAGACCGGGCTT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670534  8 - 171882078 ---ACGGGCCC-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           89515 12 -   1025902 CAGACGGGGCCC
i cerAty1.NW_012001098v1       I 17 C 0
s colAng1.NW_012115411v1          146402 12 +   1230721 CAGACGGGGTCC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80617 250 + 149150640 I
e macNem1.NW_012017243v1          125954 32 +  25972781 I

a score=6876.000000
s hg38.chrX_KI270880v1_alt         14729 2 +    284869 CT
s panTro5.chrX                    120026 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46376 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83793 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19254 2 + 141252148 CT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     80867 2 + 149150640 CT
i rheMac8.chrX                 I 250 C 0
s macFas5.chr7                 171670542 2 - 171882078 CT
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           89527 2 -   1025902 CT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          146414 2 +   1230721 CT
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e macNem1.NW_012017243v1          125954 32 +  25972781 I

a score=322371.000000
s hg38.chrX_KI270880v1_alt         14731  97 +    284869 GTGCCGTGTGGGGTCCGACCCCTCGGCCTGGGCAGGGCGGCCCGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCTGCT--CCTTCCCCG------------------------------------GCTC--TGAG
s panTro5.chrX                    120028  97 + 155549662 GTGCCGTGTGGGGTCCGACCCCTCGGCCTGGGCAGGGCGGCCCGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCTGCT--CCTTCCCCG------------------------------------GCTC--TGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46378  97 +    105888 GTGCCGTGTGGGGTCCGACCCCTCGGCCTGGGCAGGGCGGCCCGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCTGCT--CCTTCCCCG------------------------------------GCTC--TGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83795 133 +    417917 GTGCCATGTGGGGTCCGACCCCTCGGCCTGGGCAGGGGCGCCCGTGGGCACCGTGCTGGGGATGACCCccggctcctgct--ccttccccggctcctgctccttccccggctcctgctccttccccagctc--TGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19256  99 + 141252148 GTGCCCTGTGGGGTCCGACCCCGCGGCCTGGGCAGGGTGGCCCGTGGGCACCGTGCTGGGGATGACGTCTGGCCTCTGCT--TTTTCCCGG------------------------------------GCTCTATGAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     80869  92 + 149150640 GTGCCACGTGGGGTCTGACCCCTTGGCCTGGGCGGGGCGGCACGTGGGCACC--GCTGGG---AACCTCCGGCCTCCGCT--CCTTCCCCG------------------------------------GCTC--TGAG
i rheMac8.chrX                 C 0 I 490
s macFas5.chr7                 171670544  97 - 171882078 GTGCCACGTGGGGTCTGACCCCTTGGCCTGGGCGGGGCGGCACGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCCGCT--CCTTCCCCG------------------------------------GCTC--TGAG
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          125986  97 +  25972781 GTGCCACGTGGGGTCTGACCCCTTGGCCTGGGCGGGGCGGCACGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCTGCT--CCTTTCCCG------------------------------------GCTC--TGAG
i macNem1.NW_012017243v1       I 32 I 132
s cerAty1.NW_012001098v1           89529  99 -   1025902 GTGCCACGTGGGGTCTGACCCCTTGGCTTGGGCGGGGCGGCTGGTGGGCACCGTGCTGGGGACGACCTCCGGCCTCTGCTCCCCCCCCCCG------------------------------------GCTC--TGAG
i cerAty1.NW_012001098v1       C 0 I 2
s colAng1.NW_012115411v1          146416  85 +   1230721 GTGCCACGTGGGGTCTGACCCCTTGGCCTGGGCAGGGCGGCTCCTGGGCAC------------GACCTCCGGCCTCTGCT--CCTTCCCCG------------------------------------GCTC--TGAG
i colAng1.NW_012115411v1       C 0 I 2
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=97815.000000
s hg38.chrX_KI270880v1_alt         14828 52 +    284869 TCATAAAGGCCTCCC-GCT--CCCCC--GGGAGCCGTGTCTTCTCTAGGAACTGCTG
s panTro5.chrX                    120125 52 + 155549662 TCATAAAGGCCTCCC-GCT--CCCCC--GGGAGCCGTGTCTCCTCTAGGAACTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46475 52 +    105888 TCATAAAGGCCTCCC-GCT--CCCCC--GGGAGCCGTGTCTCCTCTAGGAACTGCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83928 52 +    417917 TCATAAAGGCCTCCC-GCT--CCCCC--GGGAGCCGTGTCTCCTCTAGGAACTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19355 54 + 141252148 TCATAAAGGCCTCCC-GCT--CCCCCCGGGGAGCCGTGTCTCCTCTAGGAACTGCTG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670643 52 - 171882078 TCCCGAGGGCCTCCCTGCTCCCCCCC--CAGGGCCGTGT---CTCCGACAACTGCTG
i macFas5.chr7                 I 2 C 0
s cerAty1.NW_012001098v1           89630 53 -   1025902 TCCCGAGGGCCTCCCTGCT--CCCCC--CGGGGCCGTGTCTCCTCCGGGAACTGCTG
i cerAty1.NW_012001098v1       I 2 C 0
s colAng1.NW_012115411v1          146503 54 +   1230721 ACGTCAGGGCCTCCCTGCT-CCCCCC--GGGGGCCGTGTCTCCTCCAGGAACTGCTG
i colAng1.NW_012115411v1       I 2 I 69
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I

a score=82216.000000
s hg38.chrX_KI270880v1_alt         14880 67 +    284869 AGCGCGGCTGGGTCTGGCTCTGCCTCATTCCTGCATCTGATGCCCGCCCGTTCT-CCCCCAACTC-----------CCC
s panTro5.chrX                    120177 78 + 155549662 GGCGCGGCTGGGTCTGGCTCTGCCTCATTCCTGCATCTGATGCCCGCCAGTTCT-CCCCCAACTCTCCCCCGAACTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46527 78 +    105888 GGTGCGGCTGGGTCTGGCTCTGCCTCATTCCTGCATCTGATGCCCGCCAGTTCT-CCCCCAACTCTCCCCAGAACTCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           83980 75 +    417917 GGCGCGGCTGGGTCTGGCTCTGCCTCATTCCTGCATCTGAAGCCCGCCAGTTCT-CCCACAACTCCCTTCT---CTTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19409 67 + 141252148 GGCGTGGCCAGGTCCGG-TCTGCCTCATTCCTGCATCTGATGCTCGCCAGTTCTCCCCCCAACTCCCC-----------
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670695 62 - 171882078 GGCGCGGCT-GGTCCGGCTCCGTCCAGTTCCTGCGTCTGATGCCC-CCCGTTCt-cccccaacgc--------------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           89683 65 -   1025902 GGCGCGGCT-GGTCCGGCTCCGTCCAGTTCCTGCGTCTGATGCCC-CCAGTTCt-cccccaacgcccc-----------
i cerAty1.NW_012001098v1       C 0 I 13
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          146557 69 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I

a score=16825.000000
s hg38.chrX_KI270880v1_alt         14947 31 +    284869 TT-TCT-CCATCTCCTCCCTCCCCTCCGTCTTG
s panTro5.chrX                    120255 33 + 155549662 TTCTCTTCCGTCTCCCCCGTCCCCTCCGTCTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46605 33 +    105888 TTCTCTTCCGTCTCCCCCGTCCCCTCCGTCTTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84055 33 +    417917 Atctcctccgtctcccccctcccctccgtctcc
i gorGor5.CYUI01015925v1       C 0 I 114
s nomLeu3.chrX                     19476 22 + 141252148 -----------CTTCTCCATCCCCTCCGTCTTG
i nomLeu3.chrX                 C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89748 13 -   1025902 I
e colAng1.NW_012115411v1          146557 69 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I
e macFas5.chr7                 171670757  0 - 171882078 C

a score=97432.000000
s hg38.chrX_KI270880v1_alt         14978 144 +    284869 CCCGTCTCCATTTCCTCCATCTCTCCCTTCTCCGTCTCCTCCGTCTCGTGGCTGTCCAGACCCCGTCCCT--CCG--------------------CAGGCTGGGTC---------------CCCCCTTGTTCT------------------------GGGCGGGGCTCTCGGTGCCGGTCTGGTGCCAGTGCTGGGAACCTGTGG
s panTro5.chrX                    120288 133 + 155549662 CCCGTCTCCATTTCCTCCATCTCTCCCTTCTCCGTCTCCTCCGTCTCATGGCTGTCCAGGCCCCGTCCCT--CCG--------------------CAGGCTGGGTC---------------CCCCCTTGTTCT------------------------GGGCGGGGCTCTCGGTGCC-----------AGTGCTGGGAAACTGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46638 126 +    105888 CCCGTCTCCATTTCCTCCATCTCTCCCTTCTCCGTCTCCTCCGTCT-----------------------------NNNNNNNNNNNNNNNNNNNNCAGGCTTGGTC---------------CCCCCTTGTTCT------------------------GGGCGGGGCTCTCGGTGCC-----------AGTGCTGGGAAACTGTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84202 141 +    417917 CCCGTCTCCATCTCCTCCATCTCTCCC-TCCCCGTCTCCTCCGTCTTGTGGCTGT-CAGGCCCCGTCCCT--CCG--------------------CAGGCTGGGTC---------------CCCCCTTGTTCT------------------------GGGCAGGGCTCTcggtgccggtctggtgccagtgct-ggaacctgtgG
i gorGor5.CYUI01015925v1       I 114 C 0
s nomLeu3.chrX                     19498 124 + 141252148 CCCGTCTCCATTTCCT---------CCTTCTCCGTCTCCCCTGTCTCGTGGCCGTCCAGGCCCCGTCCTT--CCG--------------------CAGGCTTGGTC---------------CCCCCTTGTTCT------------------------GGGCAGGGCTCTGGGTGCC-----------AGTGCTGGGAGCCTGTGG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670757 161 - 171882078 ------------------------cccgtctccctcttctccgtctcacagctgcccaggccccgtcccccgccc--------------------caggctgggccccTCGTTCTGGGGAGCCCCCGTGTTCCCAGGCCCGTCCCTGCCGCCCCTGGGGACGGCGCTCTGGGGGCCGCTCTGGCGCCAATGCCGGGAGCCTGGGG
i macFas5.chr7                 C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89748  13 -   1025902 I
e colAng1.NW_012115411v1          146557  69 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I

a score=99015.000000
s hg38.chrX_KI270880v1_alt         15122 164 +    284869 TGCCCGTCACCTCTGCTCCCCGTCACCTCGGCTCCACCTCGAGGAGCTGTGTCCTGTCCCACGAGGAGGCGCCCCGGGACCTCAGGGCTGC--AGGCCATGGCTGGGTCCGGCTTTGCCTCATCCCCTGTATCTGAGG------CCCCCCAGTTCTCCCCCATCTCCCCCTC
s panTro5.chrX                    120421 141 + 155549662 TGCCCGTCACC-------CCCG---------CTCCACGTCGAGGAGCTGTGTCCTGTCCCACGAGGAGGTGCCCCGGGACCTCAGGGCTGC--AGGCCACGGCTGGGTCCGGCTCTGCCTCATCCC-TGTATCCGATG------CCCCCCAGTTCTCCCCCATCTC------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46764 141 +    105888 TGCCCGTCACC-------CCCG---------CTCCACGTCGAGGAGCTGTGTCCTGTCCCACGAGGAGGTGCCCCGGGACCTGAGGGCTGC--AGGCCACGGCTGGGTCCGGCTCTGCCTCATCCC-TGTATCCGATG------CCCCCCAGTTCTCCCCCATCTC------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84343 156 +    417917 TGCCCGTCACCTCTGCTCCCCGTCACCTCTGCTCCACCTCGAGGAGCTGTGTCCTGTCCCACGAGGAGGCGCCCCGGGACCTCAGGGCTGCAGAGGCCACGGCTGGGTCCGGCTCTGCCTCATCCT-TGTATCCCATG------CCCCCCAGTTCTCCCCCAC---------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19622 141 + 141252148 TGCCCGTCACC-------CCTG---------CTCCACCTC---GAGCTGTGTCCTGTCCCATGAGGAGGCGTCCCAGGACCTCA-GGCTGC--AGGCCATGGTTGGGTCCAGCTCTGCCTCATTCC-TGTATTTGATGCCCCCCCCCCCCAGTTCTCCCCGCTT--------
i nomLeu3.chrX                 C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89748  13 -   1025902 I
e colAng1.NW_012115411v1          146557  69 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I
e macFas5.chr7                 171670918   0 - 171882078 C

a score=18510.000000
s hg38.chrX_KI270880v1_alt         15286 19 +    284869 TCCATCTCCTCTGTCTCCC
s panTro5.chrX                    120562 19 + 155549662 TCCATCTCCTCTGTCTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46905 19 +    105888 TCCATCTCCTCTGTCTCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84499 19 +    417917 TCCATCTCCTCTGTCTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19763 17 + 141252148 CTCATCT-CTCTGTGT-CC
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1          146626 19 +   1230721 TCCGTCTCCTCCGTCTCCC
i colAng1.NW_012115411v1       I 69 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89748 13 -   1025902 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126083 132 +  25972781 I
e macFas5.chr7                 171670918  0 - 171882078 C

a score=132671.000000
s hg38.chrX_KI270880v1_alt         15305 65 +    284869 CCGTCTCATGGCTCTCCGGGCCCCGTCCCC--C-CCACCAGGCTGGGTCCCCTTATTCTGGGTAGCCC
s panTro5.chrX                    120581 64 + 155549662 CCGTCTCATGGCTCTCCAGGCCCCGTCCCC--C-C-ACCAGGCTGGGTCCCCTTATTCTGGGGAGCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46924 64 +    105888 CCGTCTCATGGCTCTCCAGGCCCCGTCCCC--C-C-ACCAGGCTGGGTCCCCTTATTCTGGGGAGCCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84518 64 +    417917 CCGTCTCATGGCTCTCCAGGCCCCGTCACC--C-C-ACCAGGCTGGGTCCCCTTATTCTGGGGAGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19780 66 + 141252148 CTGTCTCATGGCTGTCCAGGCCCTGTCCCCGTT-C-CCCAGGCTGGGTCCCCTTGTTCTGGGGAGCCC
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          126215 64 +  25972781 CCGTCTCACAGCTGTCCAGGCCCCGTCCCC--CGC-CCCAGGCT-GGGCCCCTCGTTCTGGGGAGCCC
i macNem1.NW_012017243v1       I 132 I 287
s cerAty1.NW_012001098v1           89761 65 -   1025902 ccgtctcacggccgtccaggccccgtcccc--cgc-cccAGGCTGGGGCCCCTCGTTCTGGGGAGCCC
i cerAty1.NW_012001098v1       I 13 I 2
s colAng1.NW_012115411v1          146645 65 +   1230721 CCGTCTCACGGCCGTCCAGGCCCCGTCCCC--TGC-CCCAGGCTGGGTCCCCTTGTTCTGGGGAGCCC
i colAng1.NW_012115411v1       C 0 I 2
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80961 490 + 149150640 I
e macFas5.chr7                 171670918  0 - 171882078 C

a score=99982.000000
s hg38.chrX_KI270880v1_alt         15370 61 +    284869 GTCTTGCCATCACTGTCCCTGCCGCCCCTCAGGACAGCGCTGTGGATGCCGGTCTGGTGCC
s panTro5.chrX                    120645 61 + 155549662 GTCTTGCCGTGCCCGTCCCTGCCGCCCCTCAGGACAGCGCTGTGGATGCCGGTCTGGTGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     46988 61 +    105888 GTCTTGCCGTGCCCGTCCCTGCCGCCCCTCAGGACAGCGCTGTGGATGCAGGTCTGGTGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84582 61 +    417917 GTCTTGCCATGCCCGTCCTTGCCGCCCCTCAGGACAGCGCTGTGGATGCCGGTCTGGTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19846 61 + 141252148 GTCTTGCCATGCCCGTCCCTGCCGCCCCTCAGGACAGTGCTCTGGATGCCGGTCTGGTGCC
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1           89828 61 -   1025902 GTGTTCCCAGGCCCGTCCCTGCCGCCCCTGGGGACAGCGCTGTGGGGGCCGCTCTGGCGCC
i cerAty1.NW_012001098v1       I 2 I 17
s colAng1.NW_012115411v1          146712 61 +   1230721 GTGTTCCCATGCCCGTCCCTGCCGCCCCTCGGGACAGCGCTCTGGGTGCCGCTCTGGCGCC
i colAng1.NW_012115411v1       I 2 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I
e macFas5.chr7                 171670918  0 - 171882078 C

a score=57288.000000
s hg38.chrX_KI270880v1_alt         15431 47 +    284869 GGCG-------------------GTCACCCCTGCTGCGCCTTGAGCAGCTGTGTCTTGTCCCGTGA
s panTro5.chrX                    120706 66 + 155549662 GGTGCTGGGAGCCTGTGGCGCCCGTCACCCCTGCTGCACCTTGAGCAGCTGTGTCTTGTCCCATGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47049 66 +    105888 GGTGCTGGGAGCCTGTGGCGCCCGTCACCCCTGCTGCACCTTGAGCAGCTGTGTCTTGTCCCATGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84643 66 +    417917 GGCGCTGGGAGCCTGTGGCGCCCGTCACCCCTCCTGCACCTTGAGCAGCTGTGTCTTGTCCCGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19907 66 + 141252148 AGTGCTGGGAGCCTGTGGTGCCCGTCACCCCTGCTCCACCTCGAGGAGCTGTGTCCTGTCCCACGA
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1          146773 59 +   1230721 AGTGCTGGGAGCCTGG-------GCTCCCCCCGCTGCACCTGCAGGACGCGTGTCTTGTCCCAGGA
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           89889 17 -   1025902 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I
e macFas5.chr7                 171670918  0 - 171882078 C

a score=138664.000000
s hg38.chrX_KI270880v1_alt         15478  93 +    284869 GGAGGTGCCCCGGGACCTCAGGGCTGTGGCTGGCACC-----------------------TTTCATGGTCCTCCCCGAACAGAGCTCATGCTGCTGCTCCTGGGTGGACCCGGGGC
s panTro5.chrX                    120772 116 + 155549662 GGAGGTGCCCAGGGACCTCAGGGCTGTGGCTGGCACCATTGCTGGGGAGTGGCCGTCACCTTTCCTGGTCCTCCCGGAACAGAGCTCATGCTGCTGCTCCTGGGTGAACCTGGGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47115 116 +    105888 GGAGGTGCCCGGGGACCGCAGGGCTGTGGCTGGCACCGTTGCTGGGGAGTGGCCGTCACCTTTCCTGGTCCTCCCGGAACAGAGCTCATGCTGCTGCTCCTGGGTGAACCTGGGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84709  93 +    417917 GGAGGTGCCCGGGGACCTCAGGGCTGTGGCTGGCACC-----------------------TTTCATGGTCCTCCCGGAACAGAGCTCATGCTGCTGCTCCTGGGTGAACCCGGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     19973 116 + 141252148 GGAGGCACCCGGGGACCTCAGGGCTGTGGCTGGCGCCGTTGCTGCAGAGTGGCCGTCACCTTTCGCGGTCCTGCTGGAACAGAGCTCACGCTGCTGCTCCTGGGTGAACCTGGGGC
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1           89906  92 -   1025902 GGAGGCGCCCGGGGACCTCAGGGCCGCGGCTGGCACC-----------------------TTTCAcggt-ctccgggaaccgggctccggctgcggctccTCGGTGAACCCGGGGC
i cerAty1.NW_012001098v1       I 17 C 0
s colAng1.NW_012115411v1          146832  92 +   1230721 GGAAGCGCCCGGGGACCTTATGGCCGTGGCTGGCACC-----------------------TTTCGGGGT-CTCCCCGGAACACGCTCGTGCTGCGGCTCCTGGGTGGACCTGGGGC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I
e macFas5.chr7                 171670918   0 - 171882078 C

a score=160768.000000
s hg38.chrX_KI270880v1_alt         15571 108 +    284869 TGCCCC--TGTGAACACTCTTGGTTCTGACACGAAGGCACCCC----GTGAGGGAGGGGAGGGGTGGGCTGGGTCGGGTCCCTGCTCG-----------------------GGGATCTCCAAGGGGTGACGGCCACG
s panTro5.chrX                    120888 108 + 155549662 TGCCCC--TGTGAACACTCTTGGGTCTGACACGATGGCACCCC----GTGAGGGAGGGGAGGGGAGGGGTGGGCTGCGTCCCTTCTCG-----------------------GGGATCTCCAAGGGGTGACGGCCACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47231 108 +    105888 TGCCCC--TGTGAACACTCTTGGGTCTGACACGATGGCACCCC----gtgagggaggggtggggtggggtgggctgCGTCCCTTCTCG-----------------------GGGATCTCCAAGGGGTGACGGCCACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84802 131 +    417917 TGCCCC--TGTGAACACTCTTGGGTCTGACACGAAGGCACCCC----ATGAgggagggagggggtggggtggggtgggTCCCTGCTCGGGGATCTCCAAGGGTCCCTGCTCGGGATCTCCAAGGGTCGACGGCCACG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20089  73 + 141252148 TGCCCCCGTGTGAACACTCTTGGGTCTGACACCAAGGGACCCT----GTGA------------------------------------------------------------GGGATCTCCAAGGGGTGACAGCCACG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171670918 109 - 171882078 TGCCCC--CGTGGACGCGCTGGGATCTGACACGAAGGGACCCTgggagggagggaggga--gggagggGCCGGCTGAGTCCCTGCTGG-----------------------GGGATCTCC-AGGGGTGACGGCCGTC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           89998 104 -   1025902 TGCCCC--C-TGGACGCGCTGGGATCTGACACGAAGGGACCCT----GCGAGGGAGGGC--GGGTGGGGCCGGCTGAGTTCCTGCTGG-----------------------GGGATCTCC-AGGGGTGACGGCCGCG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          146924 103 +   1230721 TGCCCC--CGTGAACGCGCTTGGATCTGACAGGAAGGGATCCT----GGGAGGGAG-----GGGCGGGGCCGGCTGAGTCCCTGCTCG-----------------------GGGCTCTCCAAGGGGTGACGGCCACG
i colAng1.NW_012115411v1       C 0 I 64
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I

a score=2538.000000
s hg38.chrX_KI270880v1_alt         15679 2 +    284869 AA
s panTro5.chrX                    120996 2 + 155549662 AA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47339 2 +    105888 AA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84933 2 +    417917 AA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20162 2 + 141252148 AA
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171671027 2 - 171882078 TA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           90102 2 -   1025902 AA
i cerAty1.NW_012001098v1       C 0 I 109
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          147027 64 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I

a score=29393.000000
s hg38.chrX_KI270880v1_alt         15681 41 +    284869 GTGCGGGGGACCCACGATTGTCATTCA---GAGGGTGAGGT---------------------GCT
s panTro5.chrX                    120998 43 + 155549662 ATGCGGGGGACCCACGATTGTCATTCAC-AGAGGGTGAGGT---------------------GCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47341 43 +    105888 ATGCGGGGGACCCACGATTGTCATTCAC-AGAGGGTGAGGT---------------------GCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84935 41 +    417917 ATGCGGGGGACCCAGGATTGTCATTCA---GAGGGTGAGGT---------------------GCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20164 64 + 141252148 ATGTGGGGGACGCAGGATTGTCATTCAC-GGAGGGTGAGGTGGGGATGCCAGAGGCGCCTCCGCT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171671029 60 - 171882078 CCGCAGGGCGCCCGGGACGGCCATTCCCGGGGGAGTGGGGA-----TGCCACAGGCGCCCCCGCC
i macFas5.chr7                 C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90104 109 -   1025902 I
e colAng1.NW_012115411v1          147027 64 +   1230721 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I

a score=40242.000000
s hg38.chrX_KI270880v1_alt         15722 31 +    284869 GAGCCCTGGAACATCCTGGCTTCTG-----GCGGGA
s panTro5.chrX                    121041 31 + 155549662 GAGCCGTGGAACATCCCGGCTTCTG-----GCGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47384 31 +    105888 GAGCCGTGGAACATCCCGGCTTCTG-----GCGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           84976 31 +    417917 CAGCCCTGGACCATCCTGGCTTCTG-----GCTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20228 36 + 141252148 GAGCCCTGCAACATCCTGGCTTCTGTCCTAGCGGGA
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171671089 31 - 171882078 GAGCCCTGGAACGTCCTGGCCCCTG-----TCCTGG
i macFas5.chr7                 C 0 I 12
s colAng1.NW_012115411v1          147091 31 +   1230721 GAGCCCTGGGACGTCCTGGCCTCTG-----TCCGGC
i colAng1.NW_012115411v1       I 64 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90104 109 -   1025902 I
e rheMac8.chrX                     80961 490 + 149150640 I
e macNem1.NW_012017243v1          126279 287 +  25972781 I

a score=3600.000000
s hg38.chrX_KI270880v1_alt         15753 1 +    284869 C
s panTro5.chrX                    121072 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47415 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85007 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20264 1 + 141252148 C
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     81451 1 + 149150640 C
i rheMac8.chrX                 I 490 C 0
s macFas5.chr7                 171671132 1 - 171882078 C
i macFas5.chr7                 I 12 C 0
s macNem1.NW_012017243v1          126566 1 +  25972781 C
i macNem1.NW_012017243v1       I 287 C 0
s colAng1.NW_012115411v1          147122 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90104 109 -   1025902 I

a score=487121.000000
s hg38.chrX_KI270880v1_alt         15754 156 +    284869 GCTGGCCACGGTCAGGGTGCCCCGAGTGCTTGTTTTGTGGGGTCCCT-GGCCCCCTGCAC-ACGTGAGCCCTCGGGGGAATGGACCCCCAGAACACGTGGAGGGCATGACTGCTGGGCTCTGGGTCTCCCCGCAGCGCCGCCGTCCACTAGGACCCCC
s panTro5.chrX                    121073 156 + 155549662 GCTGGCCACGGTCAGGGTGCCCCGAGTGCTTGTTTTGTGGGGTCCCT-GGCCCCCTGCAC-ACGTGAGCTCTCGGGGGAATGGACCCCCAGAACAGGTGGAGGGCACGACTGCTGGGCTCTGGGCCTCCCCGCAGCGCCGCCGTCCACGAGGGCCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47416 156 +    105888 GCTGGCCACGGTCAGGGTGCCCCGAGTGCTTGTTTTGTGGGGTCCCT-GGCCCCCTGCAC-ACGTGAGCTCTCGGGGGAATGGACCCCCAGAACAGGTGGAGGGCACGACTGCTGGGCTCTGGGCCTCCCCGCAGCGCCGCCGTCCACAAGGGCCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85008 156 +    417917 GCTGGCCATGGTCAGGGTGACCCGGGTGCTTGTTTTGTGGGGTCCCT-GGCCCCCTGCAC-ACGTGAGCTCTCGGGGGAATGGACCCCCAGAACACGTGGAGGGCATGACTGCTGGGCTCTGGGTCTCCCCGCAGCGCCGCCGTCCACGAGGACCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20265 155 + 141252148 GCCGGCCATGGTCAGGGTGACGCGGGTGCTTGTTTTGTGGGGTCCCT-GGCCCCCTGCAC-ACGTGAGCTCTT-GGGGAATGAACCCCCAGAACACGTGGAGGGCACGACCGCTGGGCTCTGGGTCTCCCTGCAGCGCCACCGTCCATGAGGACCCCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     81452 148 + 149150640 GCTGGCCACTGTCAGGGTGACCCGGGTGCTTGTTTTGTGGGGACCCCCGGAC-CC--CGC-ACGTGGGCTGTCAGGGGAACGGACCCTTAGACCAAGTGG-GGGCAGGACTGCTGGGCTCTGGGTCTCCCCGCCGCGCCGCTGTCCACGGGGA-----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171671133 154 - 171882078 GCTGGCCACTGTCAGGGTGACCCGGGTGCTTGTTATGTGGGGACCCCCGGCCCCC--CTC-ACGTGGGCTGTCAGGGGAACGGACCCTTAGACCAAGTGG-GGGCGGGACTGCTGGGCTCTGGGTCTCCCCACCGCGCCGCTGTCCACGGGGACCCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          126567 154 +  25972781 GCTGGCCACTGTCAGGGTGACCCGGGTGCTTGTTTTGTGGGGACCCCCGGCCACC--CTC-ACGTGGGCTGTCAGGGGAACGGACCCTTAGACCAAGTGG-GGGCAGGACTGCTGGGCTCTGGGTCTCCCCACCGCGCTGCTGTCCACGGGGACCCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           90213 150 -   1025902 GCTGGCCACTGTCAGGGTGACCCGGGTGCTTGTTTTGTGGGGTCCCC---AC-CA--CAC-ACGTGGGCTGTCAGGGGAACGGACCCCTAGAGCAAGTGG-CGGCAGGACTGCTGGGCTCTGGGTCTCCCCGCCGCGCTGCCGTCCACGGGGACCCCC
i cerAty1.NW_012001098v1       I 109 C 0
s colAng1.NW_012115411v1          147123 154 +   1230721 GCTGGCCACCGTCAGGGTGA-GCGGGTGCTTGTTTTGTGGGGGCCCCCGGTCCCC--CTCAACGTGGGCTGTCAGGGGAACGGACCCCTAGACCAAGTGG-GGGCTGGGCTGCTGGGCTCTGGGTCTCCCCGCCGCGCCGCCGTCCACGCGGACCCCC
i colAng1.NW_012115411v1       C 0 I 119
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=1000.000000
s hg38.chrX_KI270880v1_alt         15910 1 +    284869 G
s panTro5.chrX                    121229 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47572 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s macFas5.chr7                 171671287 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          126721 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 I 116
e saiBol1.JH378345                103224 238 +    465904 I
e nomLeu3.chrX                     20420 0 + 141252148 C
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90363 0 -   1025902 C
e colAng1.NW_012115411v1          147277 119 +   1230721 I
e rheMac8.chrX                     81600 0 + 149150640 C
e gorGor5.CYUI01015925v1           85164 0 +    417917 C

a score=214864.000000
s hg38.chrX_KI270880v1_alt         15911 144 +    284869 ACAGGACCCCCCCACTTCTCCGGCAAAGGTGTCGGTGTGCACGCCCGGCCCCGGCACTGCCCGGGGCATCTGGGGTTGTGGCT----------------------------------GGGGAAGGACGGGGCACTTGGGGGAATGCATTGGGTACAGGGATGTCGGAGGATGCTCAGT
s panTro5.chrX                    121230 143 + 155549662 ACAGGACCCCCC-ACTTCTCCGGCAAAGGTGTGGGTGTGCACGCCTGGCCCCGGCACTGCCCAGGGCATCTGGGGTTGTGGCT----------------------------------GGGGAAGGACGGGGCGCTTGGGGGAATGCAGTGGGTATAGGGATGTCGGAGGATGCTCAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47573 144 +    105888 ACAGGACCCCCCCACTTCTCCGGCAAAGGTGTGGGTGTGCACGCCCGGCCCCGGCACTGCCCAGGGCATCTGGGGTTGTGGCT----------------------------------GGGGAAGGACGGGGCGTTTGGGGGAATGCAGTGGGTATAGGGATGTCGGAGGATGCTCAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85164 174 +    417917 ----GCCCCCCCCCCTTCTCCGGCAAAGGCGTGGGTGTGCACGCCCGGCCCCGGCACAGCCCAGGGCATCTGGGGTTAGGGCTGGGGAAAGGACGGGGGGCTGGGGAAGGACGGGGGGGGGAAGGACGGGGCGCTTGGGGGAATGCGGTGGGTACGGGGATGTCGGAGGATGCTCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20420 134 + 141252148 -------CCCCCCACCTCTCCAGCAAAGGCATCGGTGTGCACGCCCGGCCCTGGCACAGCCCAGGGCATCTGGGGCCACAGCT----------------------------------GGGGAAGGACGGGGTGCTT-GGGGAATGCGGTGGGTACGGGGACGTCAGACGACACTC--G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     81600 122 + 149150640 --------CCCCCACTTCCCCAGCCGAGGC-TGAGCGTGCACGGCCGGCCCTGGTGTGGCCCAGGGCATC-GGGGCCGTGGCT----------------------------------GGGGGAGGAGGGGGCGCTT-GGGGGATGCGGTGAGTACGGGGGTGTCGGC-----------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171671288 118 - 171882078 --------------CTTCCCCAGCCGAGGC-TGAGCGTGCACGGCCGGCCCTGGTGTGGCCCAGGGCATC-GGGGCCGTGGCT----------------------------------GGGGGAGGAGGGGGCGCTT-GGGGGATGCGGTGAGTACGGGGGTGTCGGAGG---------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           90363 124 -   1025902 -------CCCCCCACTTCCCCGGCGGAGGC-TGAGCGTGCACGGCCGGCCCTGGTGTGGCCCAGGACATC-GGGG-CGTGGCT----------------------------------GGGGGAGGAGGGGGCGCTT-GGGGGATGCGGTGAGTACGGGGGTGTCGGAGG---------
i cerAty1.NW_012001098v1       C 0 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          147277 119 +   1230721 I
e macNem1.NW_012017243v1          126722 116 +  25972781 I

a score=12137.000000
s hg38.chrX_KI270880v1_alt         16055 4 +    284869 GGCT
s panTro5.chrX                    121373 4 + 155549662 GGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47717 4 +    105888 GGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85338 4 +    417917 GGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20554 4 + 141252148 GGCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     81722 4 + 149150640 GGCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171671406 2 - 171882078 --CT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          126838 4 +  25972781 GGCT
i macNem1.NW_012017243v1       I 116 C 0
s cerAty1.NW_012001098v1           90487 2 -   1025902 --CT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          147396 4 +   1230721 GGCT
i colAng1.NW_012115411v1       I 119 C 0
e saiBol1.JH378345                103224 238 +    465904 I
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=358330.000000
s hg38.chrX_KI270880v1_alt         16059 85 +    284869 GTGCAGGGGCCTCACCAGCGTCG-TGGGTGGGG-GACGCTGT-----CTTTCACGGCCCCAGGGAGGCCTCTCATGTCTCAGCCTTGAACCC
s panTro5.chrX                    121377 85 + 155549662 GTGCAGGGGCCTCAACAGCGACG-TGGGTGGGG-GACGCTGT-----CTTTCACGGCCCCAGGGAGGCCTCTCATGTCCCAGCCTTGAACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47721 85 +    105888 GTGCAGGGGCCTCAACAGCGACG-TGGGTGGGG-GACGCTGT-----CTTTCACGGCCCCAGGGAGGCCTCTCATGTCCCAGCCTTGAACCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85342 90 +    417917 GGGCAGGGGCCTCACCAGCGACG-TGGGTGGGG-GACGCTGTCTTTCCTTTCACGGCCCCAGGGAGGCCTCTGATGTCTCAGCCTTGAACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20558 90 + 141252148 GTGCAGGGGCCTCACCATGGCCG-TGGGTGGGG-GACGCTGTCTTTCCTTTCACTGCCCCAGGGAGGCCTCTGGCGTCTCAGCCTGGAACCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     81726 87 + 149150640 GTGCGGGGGCCTCACCAGGGACG-TGGGTGGGG-GACGCTG---TTCCTTTCACGGCCCCGGGGAGCCCTCTGATGTCTCAGCCTTGAACCC
i rheMac8.chrX                 C 0 I 122
s macFas5.chr7                 171671408 87 - 171882078 GTGCGGGGGCCTCACCAGGGACG-TGGGTGGGG-GACGCTG---TTCCTTTCACGGCCCCAGGGAGCCCTCTGATGTCTCAGCCTTGAACCC
i macFas5.chr7                 C 0 I 15
s macNem1.NW_012017243v1          126842 87 +  25972781 GTGCGGGGGCCTCACCAGGGACG-TGGGTGGGG-GACGCTG---TTCCTTTCACGGCCCCAGGGAGCCCTCTGATGTCTCAGCCTTGAACCC
i macNem1.NW_012017243v1       C 0 I 119
s cerAty1.NW_012001098v1           90489 90 -   1025902 GTGCGGGGGCCTCACCAGGGACG-TGGGTGGGG-GACGCTGTCTTTCCTTTCACGGCCCCAGGGAGCCCTCTGATGTCTCAGCCTTGAACCC
i cerAty1.NW_012001098v1       C 0 I 120
s colAng1.NW_012115411v1          147400 90 +   1230721 GTGCAGGGGCCTCACCAGGGACG-TGGGTGGGG-GACGCCGTCCTTCCTTTCCCGGCCCCGGGGAGCCCTCGGATGTCTCAGCCTTGAACCC
i colAng1.NW_012115411v1       C 0 I 107
s saiBol1.JH378345                103462 92 +    465904 GCGCAGGGCCCTCCGCAGGGACACTGGGTGGGGAGGCCCCGTGTTCCCTTTCACGGCCCCGGGGAGGCCTCTGGCATCTCAGCCTCGAACCC
i saiBol1.JH378345             I 238 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=65039.000000
s hg38.chrX_KI270880v1_alt         16144  91 +    284869 TAATTGGGGGG------GCTCCCAGTGTCAGTGTGGGGAGGCTGAGGGCGCTGGTCAGAG--------------------CCC----TCCCATGACCATGGGCTCCGGCTCATAGGTGTGT
s panTro5.chrX                    121462 108 + 155549662 TAATTGGGGGG-------CTCCCAGTGTCATTGTGGG-AGGCTGAAGGCGCCGGTCAGAGGTGAACCCCCCACTTCTGGCCCC----TCCCATGACCATGGGCTCCGGCTCATAGGT-TGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47806 108 +    105888 TAATTGGGGGG-------CTCCCAGTGTCATTGTGGG-AGGCTGAGGGCGCCGGTCAGAGGTGAACCCCCCACTTCTGGCCCC----TCCCATGACCATGGGCTCCGGCTCATAGGT-TGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85432 101 +    417917 TAACTGGGGGG-------CT-CCAGTGTCAGTGTGGG-AGGCTGAGGGCGCCGGTCAGAGGTGAACCCCCC-CTTCTGG-CCC----TCCCATGACC-TGGGCTCCGGCTCATAGGG----
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     20648  98 + 141252148 TAATTGGGGGGGGGGGGGCTCCTAGAGTCA--GTGGG-AGGCTGAGGGCCCTGGTACAGGGTGCACCCCC----------CAC----TCCCA------TGGGCTCCGGCTCACAGGTGTGT
i nomLeu3.chrX                 C 0 M 1337
s macFas5.chr7                 171671510  93 - 171882078 CCATTGGGGGC-------CTCC---TGTCAGCGTGGG-AGGTGGAGGGTTCCGGTCAGAGGTGAACCCCCCGCTTCGGCCCCCTCAGTCCCATGACCACGG---CCG--------------
i macFas5.chr7                 I 15 C 0
s saiBol1.JH378345                103554  86 +    465904 -CACGGGTCTC-------CTCCTGGTCTCAGGGCTGC-GGGCTGCGGGCCCC--TCAGAGGTGA----------------CCC----CCC----ACCACGGGCTCGGGCGTGCAGCTGTGT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90579 120 -   1025902 I
e colAng1.NW_012115411v1          147490 107 +   1230721 I
e rheMac8.chrX                     81813 122 + 149150640 I
e macNem1.NW_012017243v1          126929 119 +  25972781 I

a score=1746.000000
s hg38.chrX_KI270880v1_alt         16235 3 +    284869 GTG
s panTro5.chrX                    121570 3 + 155549662 GTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47914 3 +    105888 GTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s saiBol1.JH378345                103640 3 +    465904 GTG
i saiBol1.JH378345             C 0 M 317
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90579 120 -   1025902 I
e colAng1.NW_012115411v1          147490 107 +   1230721 I
e rheMac8.chrX                     81813 122 + 149150640 I
e macNem1.NW_012017243v1          126929 119 +  25972781 I
e macFas5.chr7                 171671603 0 - 171882078 C
e gorGor5.CYUI01015925v1           85533 0 +    417917 C

a score=-41.000000
s hg38.chrX_KI270880v1_alt         16238 19 +    284869 TGTTGGGGGGTGGTGTCCG
s panTro5.chrX                    121573 13 + 155549662 TGGTGGGGGGGGC------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47917 12 +    105888 TGGTGGGGGG-GC------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85533 19 +    417917 GGGTGGGGGGGGGGTGTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171671603 11 - 171882078 ---TGGGGGGCCCT-----
i macFas5.chr7                 C 0 C 0
e saiBol1.JH378345                103643 317 +    465904 M
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           90579 120 -   1025902 I
e colAng1.NW_012115411v1          147490 107 +   1230721 I
e rheMac8.chrX                     81813 122 + 149150640 I
e macNem1.NW_012017243v1          126929 119 +  25972781 I

a score=230074.000000
s hg38.chrX_KI270880v1_alt         16257 121 +    284869 GAGGTGGTGTG-GGGCGGACATGGTCTCCCAGACGGGCTCCCCGGAGCTG------AGGGCAGGGTGGGCCCTGCGGGCCGTGGCTCCCAGTGTCATTTCCCTGCGGCAG----------AACCTCCTGCCCTGCACC
s panTro5.chrX                    121586 116 + 155549662 ------------GGGCGGACATGGTCTCCCAGACAGGCTCCCCGGAGCTC------GGGGCAGGGTGGGCCCTGCGGGCCGTGGCTCCCAGTGTCATTTCCCTGCGGCAGCC----ACAGACTCTCCTGCCCTGCACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     47929 122 +    105888 ------------GGGCGGACATGGTCTCCCAGACAGGCTCCCCGGAGCTCGGGGCAGGGGCAGGGTGGGCCCTGCAGGCCGTGGCTCCCAGTGTCATTTCCCTGCGGCAGCC----ACAGACTCTCCTGCCCTGCACC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85552 135 +    417917 GAGGTGATGTGTGGGCGGACATGGTCTCCCAGAGGGGCTCCCCGGAGCTCGGGGA-GGGGCGGGGTGGGCCCTGCAGGCCGTGGCTCCTGGTGTCATTTCCCTGCAGCAGCC--CAGTCGACCCTCCTGCCCTGCACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     81935 130 + 149150640 GAGGTGGTGGG-GGGTGGACTTGCCCGCCCAGACGGGCTCCCCCGAGCGC------GGGGCAGGGTGGGCCCC-CAGGCCGTGGCTCCCGGTGCCATTTCCCTGCGGCGGCCACCGTCGGACCCTCCTGCCCGGCACC
i rheMac8.chrX                 I 122 C 0
s macFas5.chr7                 171671614 130 - 171882078 GAGGGGGTGGG-GGGCGGACTTGCCCGCCCAGACGGGCTCCCCCGAGTGC------GGGGCAGGGTGGGCCCC-CAGGCCGTGGCTCCCGGTGCCATTTCCCTGCGGCGGCCACCGTCGGACCCTCCTGCCCGGCACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          127048 129 +  25972781 GAGGTGGTGGG-GGGCGGACTTGCCCGCCCAGACGGGCTCCCCC-AGCGC------GGGGCAGGGTGGGTCCC-CAGGCCGTGGCTCCCGGTGCCATTTCCCTGCGGCGGCCACCGTCGGACCCTCCTGCCCGGCACC
i macNem1.NW_012017243v1       I 119 C 0
s cerAty1.NW_012001098v1           90699 126 -   1025902 GAGGTGGTGGG-GGGCGGACTT----GCCCAGACGGGCTCCCCCGAGCGC------GGGGCAGGGTGGGCCCC-CAGGCCGTGGCTCCCGGTGCCATTTCCCTGCGGTGGCCACAGTCGGACCCACCTGCCCGGCACC
i cerAty1.NW_012001098v1       I 120 C 0
e saiBol1.JH378345                103643 317 +    465904 M
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          147490 107 +   1230721 I

a score=194920.000000
s hg38.chrX_KI270880v1_alt         16378 87 +    284869 TGTCCTGTTGTTGGGGG---TCCTGACCCTTCGCAGACCCAGGTGGGGGCAT---CCGGGAATTCAGGGGAGCACCTGGTGACACTGAGGACA
s panTro5.chrX                    121702 90 + 155549662 TGCCCTTTTGTTGGGGGGGGTCCTGACACTTCGCAGACCCAGGTGGGGGCGT---CCGGGAATTCAGGGGAGCACCTGGTGACACTGAGAACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48051 88 +    105888 TGCCCTTTTGTTGGGGG--GTCCTGACACTTCGCAGACCCAGGTGGGGGTGT---CCGGGAATTCAGGGGAGCACCTGGTGACACTGAGGACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85687 64 +    417917 TGTCCTGTTGTTGGGGG----TCTGACCCTTCGCAGACCCAGGTGGGGGCGT---CCGGGAC-------------------ACACTG---ACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82065 87 + 149150640 CGTCC---TGTTGGGGG--GCCCTGACCCTTCGCAGACCCAGGTGGGGGCGTCCCCCGGGAAATCCGGGGA-CACCTGGAGACACTGAGGACA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171671744 90 - 171882078 TGTCCTGTTGTTGGGGG--GCCCTGACCCTTCGCAGACCCAGGTGGGGGCGTCCCCCGGGAAATCCGGGGA-CACCTGGAGACACTGAGGACA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          127177 90 +  25972781 TGTCCTGTTGTTGGGGG--GCCCTGACCCTTCGCAGACCCAGGTGGGGGCGTCCCCCGGGAAATCTGGGGA-CACCTGGAGATACTGAGGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           90825 87 -   1025902 TGTCCTGTTGTTGGGGG--TCCCTGACCCTTAGCAGACCCAGGTGGGGGCGTTCTCCGGGAAATCCGGGGA-AAT---GGGACACTGAGGACA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          147597 90 +   1230721 TGTCCTGTTGTTGGGGT--GCCCTGACCCTTCGCAGACGCAGGTGGGGGCGTCCTCCGGGAAATCCGGGGA-TACCTGATGACACTGGGCACA
i colAng1.NW_012115411v1       I 107 C 0
e saiBol1.JH378345                103643 317 +    465904 M
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=114763.000000
s hg38.chrX_KI270880v1_alt         16465 42 +    284869 CCTTGGGGACAGCAG-CATTCCCCC-GGGAGGTGCTGCCTCGTC
s panTro5.chrX                    121792 42 + 155549662 CCTTGGGGGCAGCGG-CATTCCCCT-GGGAGGTGCTGCCTCGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48139 42 +    105888 CCTTGGGGGCAGCGG-CATTCCCCT-GGGAGGTGCTGCCTCGTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85751 43 +    417917 CCTTGGGGCAGGCGGCCATTCCCCT-GGGAGGTGGTGCCTCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82152 42 + 149150640 CGTTTGGGGCAGCGG-CCGTTCCCC-AGGAGGTGCTGCCACGTC
i rheMac8.chrX                 C 0 I 51
s macFas5.chr7                 171671834 42 - 171882078 CGCTTGGGGCAGCGG-CCGTTCCCC-AGGAGGTGCTGCCACGTc
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          127267 42 +  25972781 CGTTTGGGGCAGCGG-CCGTTCCCC-AGGAGGTGCTGCCACGTC
i macNem1.NW_012017243v1       C 0 I 52
s cerAty1.NW_012001098v1           90912 42 -   1025902 CCTTGGGGGCAGCGG-CCGTTCCCT-GGGAGGTGCTGCCACGTC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          147687 43 +   1230721 CCTTGGGGGCAGCGG-CCGTTCCCCTGGGAGGTACTGCCAGGTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                103973 41 +    465904 -CCTTGGGGTAGCTG-CCGTCACCT-GGGCGGCGTGGCCCTGTC
i saiBol1.JH378345             M 317 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=64107.000000
s hg38.chrX_KI270880v1_alt         16507 51 +    284869 TACCCACCACCTGGAG---CCCCCGCAGTCTCTCCTCAGGGGTCAC-GGGACCAC
s panTro5.chrX                    121834 51 + 155549662 TACCCACCACCTGGAG---CCCCCGCAGTCTCTCCTCAGGGGTCAC-GGGACCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48181 51 +    105888 TACCCACCACCTGGAG---CCCCCGCAGTCTCTCCTCAGGGGTCAC-GGGACCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85794 50 +    417917 TACCCACCACCTGGAG---CCCCCGCAGTCTCTCCTCA-GGGTCAC-GGGACCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171671876 52 - 171882078 -ccccgccgcccccagcctccgccgccgTCTCTCCTCC-GGGTCGCAGGGACCG-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           90954 51 -   1025902 CCCCCACTGCCCCGAG---CCGCCGCCGTCTCTCCTCG-GGGTCGCGGGGACCGC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          147730 50 +   1230721 CACACACTGCCCCGAG---CC-CCGCCGTCTCTCCTCG-GGGTCACGGGGACCAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104014 35 +    465904 ----------------TCCCCCCAGCTGCCTCTCCTCG---GTCAC-GGGACCAC
i saiBol1.JH378345             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     82194 51 + 149150640 I
e macNem1.NW_012017243v1          127309 52 +  25972781 I

a score=229120.000000
s hg38.chrX_KI270880v1_alt         16558 78 +    284869 CCTGTGCGTCCGCCTCCTTCACAGCGACGGCTGCCGGTGGATGAACGGGGTGCGTATGCTGCTCTCGGGGTGGTCCCG
s panTro5.chrX                    121885 78 + 155549662 CCTGTCTGTCCATCTCCTTCACAGCGACGGCTGCCGGTGGATGAACGGGGTGTGTGTGCTGCTCTCGGGGTGGTCCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48232 78 +    105888 CCTGTCTGTCCATCTCCTTCACAGCGACGGCTGCCGGTGGATGAACGGGGTGTGTGTGCTGCTCTCGGGGTGGTCCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85844 74 +    417917 CCTGTGCGTCCA---CCTTCACAG-GACGGCTGCCGTTGGATGAACGGGGTGTGTGTGCTGCTCTCGGGTGGGTCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82245 77 + 149150640 CCTGTGCGTCCGGCTCCTTCACAGCCAGGGCTG-CGGTGGGTGGACGGGGCGTGTGCGCAGCTCTCGGGGTGCTCCCG
i rheMac8.chrX                 I 51 I 300
s macFas5.chr7                 171671928 77 - 171882078 CCTGTGCGTCCAGCTCCTTCACAGCCAGGGCTG-CGGTGGGTGGACGGGGCGTGTGCGCAGCTCTCGGGGTGCTCCCG
i macFas5.chr7                 C 0 I 4
s macNem1.NW_012017243v1          127361 77 +  25972781 CCTGTGCGTCCGGCTCCTTCACAGCCAGGGCTG-CGGCGGGTGAACGGGGCGTGTGCGCAGCTCTCGGGGTGCTCCCG
i macNem1.NW_012017243v1       I 52 I 300
s cerAty1.NW_012001098v1           91005 77 -   1025902 CCTGTGCGTCCAGCTCCCTCACAGCCAGGGCTG-CGGTGGGTGAACGGGGCGTGTGTGCAGCTCTCGGGGTGCTCCCG
i cerAty1.NW_012001098v1       C 0 I 11
s colAng1.NW_012115411v1          147780 77 +   1230721 CCTGTGCGTCCAGCTCCTTCACGGCCAGGGCTG-CGGTGGATGAACGGGGCGTGTGTGCAGCTCTCGGGGTGTCCCCG
i colAng1.NW_012115411v1       C 0 I 4
s saiBol1.JH378345                104049 75 +    465904 CCTGTGCGCCCACCTGGGTCACGGCCACGCTTCCCGGTGGACGAACGGGGCGTGTGTG--GCTCT-AGGGTGGCCCAG
i saiBol1.JH378345             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T

a score=2000.000000
s hg38.chrX_KI270880v1_alt         16636 2 +    284869 GC
s panTro5.chrX                    121963 2 + 155549662 GC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48310 2 +    105888 GC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85918 2 +    417917 GC
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                104124 2 +    465904 GC
i saiBol1.JH378345             C 0 I 16
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91082 11 -   1025902 I
e colAng1.NW_012115411v1          147857 4 +   1230721 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I
e macFas5.chr7                 171672005 4 - 171882078 I

a score=275447.000000
s hg38.chrX_KI270880v1_alt         16638 229 +    284869 TTGGCCCTGCCCTGCC------------------------------------------GCGTGGACGCTGCCACCTCCGTTTCCTGGGGGAGAGTTTTGTCGTGTGTGAGGAC--GGGGTTGTTCCCATGGTCACCACCTGTGACCCTCACCTGCGTGCAGAGGGAGCACAGCTGGGCCTGGGCTCATCCACGTCGGGTGCCCCTGGGGTG-CTTGTGGCCTCCCCTGCACAGGGAGCTCCTCCTGGTGGGGCCTCCGACCCCCCTCATTTAGG
s panTro5.chrX                    121965 260 + 155549662 TTGGCCCTGCCCTGCC-----CTCCCCAAGGGCACAGGG---------CTGCCCTGCCGCGTGGACACTGCCACCTCCGTTTCCTGGGGGAGCGTTTTGTCTTGTGTGAGGACAGGGGGTTGTTCCCATGGTCACCACCTGTGACCCTCCCCTGCCTGCAGAGGGAGCAGAGCTGGGCCTGGGCTCATCCGTGTTGGGTGCCCCTGGGGGGGCTCGTGGCCTCCCCTGCACACGGGGCTCCTCCTGGTGGGGCCTCCGAACCCCCTCATTTAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48312 240 +    105888 TTGGCCCTGCCCTGCCCTGCCCTCCCCAAGGGCACAGGG---------CTGCCCTGCCGCGTGGACGCTGCCACCTCCGTTTCCTGGGGGAGCGTTTTGTCTTGTGTGAGGACAGGGGGTTGTTCCCATGGTCACCACCTGTGACCCTCCCCTGCCTGCAGAGGGAGCAGAGCTGGGCCTGGGCTCATCCGTGTTGGGTGCCCCTGGGGGG-------------------------GCTCCTCCTGGTGGGGCCTCCGAACCCCCTCATTTAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           85920 260 +    417917 TTGGCCCTGCCCTCCC---CCTCTCCCAAGTGCACAGGGCTGGCTGCCCTGCCCTGCTGTGTGGACGCTGCCACCTCCGTTTCCTGGGGAG------TGTTTTCTGTGAGGAC--GGGGCTGTTCCCATGGTCACCACCTGTGACCCTC-CCTGCCTGTGGAGGGAGCAGAGCTGGGCCTGGGCTCATCCGTGTTGGGTGCCCCTGGGGTG-CTTGTGGCCT-CCCTGCACACGGGGCTCCTCCTGGTGGGGCCTCTGAACTCCCTCATTTAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672009 225 - 171882078 --------GCCCGCCT--------------------------------GTTCCCGGCCGTGTG------GCCACGTCCCTGTCCGGGGGGAACATTTTGTCGTGTGCGAGGAACGGGGGTCG-TCCCGTGGTCACCACCCGTGACCCTCCCTGGCCTGTGGAAGGAGCAGAGCTGGGCCTGGGCTCAGGCGTGTCGGGCGTCCCTGGAGGG-CTCGTGGTCCTCCCTGCACTCAGGGTTGTGCCCGGCGGGGCCTCCGAACCCCCTGGTTCAG-
i macFas5.chr7                 I 4 C 0
s cerAty1.NW_012001098v1           91093 226 -   1025902 --------GCCCACCT--------------------------------GTTCCCGGCCGTGTG------GCCACGTCCCTGTCCGGGGGGAGCATTTTGTCGTGTGCGAGGAACGGGGGTCT-TCCCGTGGTCACCACCCGTGACCCTCCCTGGCCTGTGGAGGGAGCAGAGCTGGGCCTGGGCTCAGCTGCGTCCGGTGCCCCTGGCGGG-CTCGTGGCCCCCCCTGCACTCAGCGCTGCGCCTGGCGGGGGCTCCGAACCCCCTCGTTTAGG
i cerAty1.NW_012001098v1       I 11 I 169
s colAng1.NW_012115411v1          147861 226 +   1230721 --------GCCCGCCT--------------------------------GTTCCCCGCCGTGCG------GCCACGTCCCTTTCCGGGGGAAGCGTTTTGTCCTGTGCGAGGAAAGGGGGTTGTTCCTGTGGCCACCACCTATGACCTTTCCTGGCCTGTGGAGTGAGCAGAGCTGGGCCTGGGCTCGTCCGGGTCGGGTGCCCCTGGAGGG-CT-GTTGTCCCCCCTGCACTCAGGGCTGCGCCCGGCGGGGCCTCCGAACCCCGTTGTTTAGG
i colAng1.NW_012115411v1       I 4 I 12
e saiBol1.JH378345                104126  16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I

a score=53082.000000
s hg38.chrX_KI270880v1_alt         16867 65 +    284869 TGTCCCCCAGCTG-TGGACGTCCCCACTCTGGCGCGGGCTCCTTCCTTCTGGGGTCGTTTGTGGAA
s panTro5.chrX                    122225 65 + 155549662 TGTCCCCCAGGTG-TGGACGTCCCCACTCTGGCGCGGGCTCCTTCCTTCTGGGGTTGTTTGTGGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     48552 65 +    105888 TGTCCCCCAGGTG-TGGACGTCCCCACTCTGGCGCGGGCTCCTTCCTTCTGGGGTTGTTTGTGGAA
i panPan2.chrUn_NW_014024225v1 C 0 I 1966
s gorGor5.CYUI01015925v1           86180 66 +    417917 TGTCTCCCAGGTGTTGGACGTCCCCACTCCGGCGCGGGCTCCTTCCTTCTGGGGTCGTTTGTGGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672234 40 - 171882078 -------------------GCCCCGACTC-GACGCCGGCTCCTTCCTTCCGGGGTCGTTG------
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          148099 64 +   1230721 TGGCCCCCGAGTG-CGGACTCCCCGACAG-GGCGCCGGCTCCTTCCCTCTGGGGCCGTTTGTGGAA
i colAng1.NW_012115411v1       I 12 C 0
e saiBol1.JH378345                104126 16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91319 169 -   1025902 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I

a score=28362.000000
s hg38.chrX_KI270880v1_alt         16932 33 +    284869 CGGGGCCTGGGTCCGTGGCTCCGGGAGGGAACG
s panTro5.chrX                    122290 33 + 155549662 CGGGGCCTGGGTCCGTGGCTCCGGGAGGGAACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50583 33 +    105888 CAGGGCCTGGGTCCGTGGCTCCGGGAGGGAACG
i panPan2.chrUn_NW_014024225v1 I 1966 C 0
s gorGor5.CYUI01015925v1           86246 32 +    417917 CGGGGCCTGGGTCCGT-GCTCCGGGAGGGAATG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672274 31 - 171882078 -GCGGCCTTGGCTCCCGG-GCTGGGAGGGACCG
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          148163 33 +   1230721 CGCGGCCTTGGCCCCCGACGCTGGGAGGAAACG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                104126 16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91319 169 -   1025902 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I

a score=560.000000
s hg38.chrX_KI270880v1_alt         16965 5 +    284869 GCCCC-
s panTro5.chrX                    122323 4 + 155549662 GCCC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50616 4 +    105888 GCCC--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86278 4 +    417917 GCCC--
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          148196 5 +   1230721 GCCC-C
i colAng1.NW_012115411v1       C 0 I 298
e saiBol1.JH378345                104126 16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91319 169 -   1025902 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I
e macFas5.chr7                 171672305 0 - 171882078 C

a score=62834.000000
s hg38.chrX_KI270880v1_alt         16970 119 +    284869 GAGGGTGGGGTCCCCCTGGCTGGGGAGGGG--CCCCGCAGAGAGGCCCAGGCTGCACCCCGAGGCGTCTGGCGTGGCTGCGGTCCCCCTCCAGCACTGACGCTTGTAAATCCTGGACGGAG
s panTro5.chrX                    122327 120 + 155549662 GAGGGTGGGGTCCCCCTGGCTGGGGAGGGGG-CCCCGCAGAGAGGCCCAGGCTGCACCCCGAGGCGTCCGGCGTGGTCGCGGTCCCCATCCAGCACCGACACTTGTAAATCCCGGACGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50620 120 +    105888 GAGGGTGGGGTCCCCCTGGCTGGGGAGGGGG-CCCCGCAGAGAGGCCCAGGCTGCACCCCGAGGCGTCTGGCGTGGTCGCGGTCCCCATCCAGCACCGACGCTTGTAAATCCCGGACGGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86282 120 +    417917 GAGGGTGGGGTCCCCCTGGCTGGGGAGGGGGCCCCCGCAGAGAGGCCCAGGCTGCACCCCGAGGCGTCTGGCGTGGCCGC-GTCCCCCTCCAGCACCGACGCTTGTAAATCCTGGACGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
e saiBol1.JH378345                104126  16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 67180 2382 +  11138919 I
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91319 169 -   1025902 I
e colAng1.NW_012115411v1          148201 298 +   1230721 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I
e macFas5.chr7                 171672305   0 - 171882078 C

a score=12140.000000
s hg38.chrX_KI270880v1_alt         17089 19 +    284869 CCACGCTGTGGCTGAGGGA
s panTro5.chrX                    122447 19 + 155549662 CCACGCTGTGGCTGAGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50740 19 +    105888 CCACGCTGAGGCTGAGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s cerAty1.NW_012001098v1           91488 19 -   1025902 CCACGCCGTGGCTGAGGCG
i cerAty1.NW_012001098v1       I 169 C 0
s otoGar3.GL873584                 69562 19 +  11138919 CCAGGCTGTGACGGCAGGA
i otoGar3.GL873584             I 2382 C 0
e saiBol1.JH378345                104126 16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          148201 298 +   1230721 I
e rheMac8.chrX                     82322 300 + 149150640 I
e macNem1.NW_012017243v1          127438 300 +  25972781 I
e macFas5.chr7                 171672305  0 - 171882078 C
e gorGor5.CYUI01015925v1           86402  0 +    417917 C

a score=27342.000000
s hg38.chrX_KI270880v1_alt         17108 9 +    284869 GCCGAGCCC
s panTro5.chrX                    122466 9 + 155549662 GCCGAGCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50759 9 +    105888 GCCGAGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86402 9 +    417917 GCTGAGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82622 9 + 149150640 GCCGAGCCC
i rheMac8.chrX                 I 300 C 0
s macFas5.chr7                 171672305 9 - 171882078 GCCGAGCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          127738 9 +  25972781 GCCGAGCCC
i macNem1.NW_012017243v1       I 300 C 0
s cerAty1.NW_012001098v1           91507 9 -   1025902 GCCGAGCCC
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584                 69581 9 +  11138919 ACAGAACCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                104126 16 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          148201 298 +   1230721 I

a score=43069.000000
s hg38.chrX_KI270880v1_alt         17117 14 +    284869 GTGACTGAAAATCC
s panTro5.chrX                    122475 14 + 155549662 ATGGCTGAAAATCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50768 14 +    105888 ATGGCTGAAAATCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86411 14 +    417917 GTGGCTGAAACTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82631 14 + 149150640 GCGACTGAAAATCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171672314 14 - 171882078 GCGACTGAAAATCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          127747 14 +  25972781 GCGACTGAAAATCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           91516 14 -   1025902 GCGACTGAAAATCC
i cerAty1.NW_012001098v1       C 0 I 259
s saiBol1.JH378345                104142 14 +    465904 GTGACTGAAAACTC
i saiBol1.JH378345             I 16 I 7
s otoGar3.GL873584                 69590 14 +  11138919 ATGATTGAAGATTT
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e colAng1.NW_012115411v1          148201 298 +   1230721 I

a score=14116.000000
s hg38.chrX_KI270880v1_alt         17131  9 +    284869 -----TCCAAACGT
s panTro5.chrX                    122489  9 + 155549662 -----TCCAAACGT
i panTro5.chrX                 C 0 I 12
s panPan2.chrUn_NW_014024225v1     50782  9 +    105888 -----TCCAAACGT
i panPan2.chrUn_NW_014024225v1 C 0 I 12
s gorGor5.CYUI01015925v1           86425  9 +    417917 -----TCCAAACGT
i gorGor5.CYUI01015925v1       C 0 I 8
s rheMac8.chrX                     82645  9 + 149150640 -----TCCCAACGT
i rheMac8.chrX                 C 0 I 289
s macFas5.chr7                 171672328  9 - 171882078 -----TCCCAAAGT
i macFas5.chr7                 C 0 I 12
s macNem1.NW_012017243v1          127761  9 +  25972781 -----TCCCAACGT
i macNem1.NW_012017243v1       C 0 I 289
s saiBol1.JH378345                104163  8 +    465904 -----TCCAAAAC-
i saiBol1.JH378345             I 7 C 0
s otoGar3.GL873584                 69604 14 +  11138919 TTTTATTCAAAAAT
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e colAng1.NW_012115411v1          148201 298 +   1230721 I

a score=84438.000000
s hg38.chrX_KI270880v1_alt         17140 168 +    284869 ACAAGCGTGATCGCCAGAAACGGTT-----TTG-------------------TACGTTTACAC-AAAACATTCACACAGC----CTGTGGTGGAGGCTC-CTGTCCAGGAC---TGAAGCGCCCGGGAGCCGC-------------------------CGGTCACCGTTGTGCGCA-CACGGACCCTTTCCACAGACGC-AGGCCCCGGAACCCAGGCTGGGTCGGGA
s panTro5.chrX                    122510 158 + 155549662 ACAAGCGTGATCGCCAGAAACGCTT-----TTG-------------------TACGTTTACAC-AAAACATTCACACAGC----CTGTGGCGGAGGCTC-CCGTCCAG--------AGGCGCCCGGGAGCCGC-------------------------CGGTCACCGTTGTGCCCA-CACAGACCCTTTCCACAGACGC-AGGCCCCGGAACCCAGGC-----CGGGA
i panTro5.chrX                 I 12 C 0
s panPan2.chrUn_NW_014024225v1     50803 158 +    105888 ACAAGCGTGATCGCCAGAAACGCTT-----TTG-------------------TACGTTTACAC-AAAACATTCACACAGC----CTGTGGCGGAGGCTC-CCGTCCAG--------AGGCGCCCGGGAGCCGC-------------------------CGGTCACCGTTGTGCCCA-CACAGACCCTTTCCACAGACGC-AGGCCCCGGAACCCAGGC-----CGGGA
i panPan2.chrUn_NW_014024225v1 I 12 C 0
s gorGor5.CYUI01015925v1           86442 167 +    417917 ACAAGCGCGATT-CCAGAAACGCTT-----TTG-------------------TACATTTACAC-AAAACATTCACACAGC----CTGTGGCGGAGGCTC-CCGTCCAGGAC---TGAGGCGCCCGGGAGCCGC-------------------------CGGTCACCGTTGTGCCCA-CAGGGACCCTTTCCAGAGACGC-AGGCCCCAGAACGGAGGCCGGGTCGGGA
i gorGor5.CYUI01015925v1       I 8 C 0
s macFas5.chr7                 171672349 141 - 171882078 GCAAGCGCGATCGCCAGCAACGCTC-----TTG-------------------TCCATTTACAC-AGCACGT----GCAGG----CTGCGGCGGAGGCTC-CTGTCCGGGGCGGGGGACGTGCCCGGGAGCCGC-------------------------GGGTCACAGCTT-----------GGACCTTTCCAGAGAGACGAGGCCCCCGGA-----------------
i macFas5.chr7                 I 12 C 0
s saiBol1.JH378345                104171 147 +    465904 AGAAGCGTGATCGCCACCCAGGCTC------TG-------------------GGCGTTCCCAC-AAAACGTTCCTGCAGG----GCGAGGAAG----TT-CCGGGCAGAACGGGGGAGGGGTCCGGGGGCCGC-----CGCACGGGGGTGGGGGGGGGCGGTCACCGCTG----------GGA------CCGCAGAGGC-TGGG------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 69618 199 +  11138919 ACAAACATGTTCACATAAAATGCTTTAAAATTGCGCCACACAGCAAGTCAGTCACCTTCACATGAAAACATTCAAAAAACAGAACTGCCGTGAGGACCCACCCTGCACTGC-----AGGCCCCAGGGACTCATGTGTCCACCTCAGGACG--------AGACCCACACTGTGGGCAGCACAGACCCTGTCCTGA------GGGTCCCAGTCCCCAGTC----------
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e colAng1.NW_012115411v1          148201 298 +   1230721 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=7093.000000
s hg38.chrX_KI270880v1_alt         17308 19 +    284869 ACGGCAAGCGCC--AGAGGGT
s panTro5.chrX                    122668 18 + 155549662 ACGGCAAGTGCC---GAGGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50961 18 +    105888 ACGGCAAGTGCC---GAGGGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86609 19 +    417917 ACGGCAAGTGCC--GGAGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672490 18 - 171882078 ACAGT-GAGGCC--GGCGGGT
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          148499 19 +   1230721 ACGGCAAAGGCC--GGAGGGT
i colAng1.NW_012115411v1       I 298 C 0
s saiBol1.JH378345                104318  4 +    465904 --------------GGAG---
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 69817 14 +  11138919 -------ATTCCAAGGAAGAT
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=68775.000000
s hg38.chrX_KI270880v1_alt         17327 35 +    284869 ----GTCCGTGTGGGAACCCGTCCCATTCA-CGCGCGGCC
s panTro5.chrX                    122686 35 + 155549662 ----GTCCGTGTGGGAACCCGTCCCATTCA-CGAGCGGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     50979 35 +    105888 ----GTCCGTGTGGGAACCCGTCCCATTCA-CGAGCGGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86628 36 +    417917 ----GTCCCTGTGGGAACCCGTCCCATTCACCCAGCGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672508 35 - 171882078 ----GTCCGTGTGGGCGCCTGTCCCAGTCC-TGAGCGGCC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          148518 35 +   1230721 ----GTCCGCGTGGGAGCCTGTCCCAGTCC-CGAGCGGCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104322 35 +    465904 ----GTCAGCGTGGGAACCGGGCCCGTTCC-CGAGCGGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          167179 35 -    735872 ----GTCCGTGTGGGAACCCGTCCCGTTCC-CGAGCGGCC
i cebCap1.NW_016107987v1       N 0 I 69
s otoGar3.GL873584                 69831 39 +  11138919 GCCTGCATGTGGGTGAGGCCATGGCTTCCA-TGGGGGCTC
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=4494.000000
s hg38.chrX_KI270880v1_alt         17362 2 +    284869 CT
s panTro5.chrX                    122721 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51014 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86664 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672543 2 - 171882078 CT
i macFas5.chr7                 C 0 I 1
s colAng1.NW_012115411v1          148553 2 +   1230721 CT
i colAng1.NW_012115411v1       C 0 I 31
s saiBol1.JH378345                104357 2 +    465904 CC
i saiBol1.JH378345             C 0 I 1
s otoGar3.GL873584                 69870 2 +  11138919 CT
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167214 69 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=23039.000000
s hg38.chrX_KI270880v1_alt         17364 16 +    284869 ACGTGTCCCCCTGGCA
s panTro5.chrX                    122723 16 + 155549662 ACGTGTCCCCCGGGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51016 16 +    105888 ACGTGTCCCCCGGGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86666 16 +    417917 ACGTGTCCCCCGGGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672546 16 - 171882078 GCGTGTCCCCCGGGCG
i macFas5.chr7                 I 1 I 14
s saiBol1.JH378345                104360 16 +    465904 GCGTGTCCCCCAGGCC
i saiBol1.JH378345             I 1 I 1
s otoGar3.GL873584                 69872 12 +  11138919 ----GTCCCACTGGCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167214 69 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e colAng1.NW_012115411v1          148555 31 +   1230721 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=19949.000000
s hg38.chrX_KI270880v1_alt         17380 14 +    284869 CAGAGCTCTGGGCA
s panTro5.chrX                    122739 14 + 155549662 CAGAGGTCTGGGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51032 14 +    105888 CAGAGCTCTGGGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86682 14 +    417917 CAGAGTTCTGGGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672576 14 - 171882078 CAGAGCCCGAGGCC
i macFas5.chr7                 I 14 C 0
s colAng1.NW_012115411v1          148586 14 +   1230721 CAGAGCTCCAGGCA
i colAng1.NW_012115411v1       I 31 C 0
s saiBol1.JH378345                104377 14 +    465904 CGGAGCTCCAGGCA
i saiBol1.JH378345             I 1 C 0
e cebCap1.NW_016107987v1          167214 69 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e otoGar3.GL873584                 69884  0 +  11138919 C
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e cerAty1.NW_012001098v1           91530 259 -   1025902 I
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=39890.000000
s hg38.chrX_KI270880v1_alt         17394 30 +    284869 GGTCCAGCCACGAACCCAC-------------AGCGGCAATCA-
s panTro5.chrX                    122753 30 + 155549662 GGTCCGGCCACGAACCCAC-------------GGCGGCCATCA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51046 30 +    105888 GGTCCGGCCACGAACCCAC-------------GGCGGCCATCA-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86696 30 +    417917 GGTCCAGCCACGAACCCAC-------------CGCGGCCCTCA-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171672590 30 - 171882078 GGTCCAGCCGCGAACCCAC-------------AGCGGGAATTC-
i macFas5.chr7                 C 0 I 5
s cerAty1.NW_012001098v1           91789 30 -   1025902 GGTCCAGCCGCAAACCCAC-------------GGCGGCAATTC-
i cerAty1.NW_012001098v1       I 259 I 5
s colAng1.NW_012115411v1          148600 30 +   1230721 GGTCCAGCCGCGAACCCAC-------------GGCGGCAATTC-
i colAng1.NW_012115411v1       C 0 I 5
s saiBol1.JH378345                104391 40 +    465904 GGTGCGGCCAC---CCCACGCCCCCGTCCCGAGCCAGCAATGA-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 69884 12 +  11138919 --------------------------------GGTGGCAACGTG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167214 69 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         80613 2792 -    811265 T
e rheMac8.chrX                     82654 289 + 149150640 I
e macNem1.NW_012017243v1          127770 289 +  25972781 I

a score=13179.000000
s hg38.chrX_KI270880v1_alt         17424 3 +    284869 ACA
s panTro5.chrX                    122783 3 + 155549662 ACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51076 3 +    105888 ACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86726 3 +    417917 ACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82943 3 + 149150640 ACA
i rheMac8.chrX                 I 289 C 0
s macFas5.chr7                 171672625 3 - 171882078 ACA
i macFas5.chr7                 I 5 C 0
s macNem1.NW_012017243v1          128059 3 +  25972781 ACA
i macNem1.NW_012017243v1       I 289 C 0
s cerAty1.NW_012001098v1           91824 3 -   1025902 ACA
i cerAty1.NW_012001098v1       I 5 C 0
s chlSab2.chrUn_KE147541v1         77821 3 -    811265 ACA
i chlSab2.chrUn_KE147541v1     T 2792 C 0
s colAng1.NW_012115411v1          148635 3 +   1230721 ACA
i colAng1.NW_012115411v1       I 5 C 0
s saiBol1.JH378345                104431 3 +    465904 CCG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 69896 3 +  11138919 CCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167214 69 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=317538.000000
s hg38.chrX_KI270880v1_alt         17427 58 +    284869 CGCTTCTGTGAATAAATAAAAGTTTATCATTCCGTACAAACGCA-CTCATTTTCCACAA---------------
s panTro5.chrX                    122786 58 + 155549662 CGCTTCTGTGAATAAATAAAAATTTATCATTCCGTACACACGCA-CTCATTTTCCACAG---------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51079 58 +    105888 CGCTTCTGTGAATAAATAAAAATTTATCATTCCGTACACACGCA-CTCATTTTCCACAG---------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86729 57 +    417917 CGCTTCTGTGAATAAATAAAA-TTTATCATCCCGTACAAACGCA-CTCATTTTCCACAA---------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     82946 58 + 149150640 TGCTTCTGTGAATAAATAAAAATTTACCATTCCGTACAAACGCA-CTCGCTTTCCACAA---------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171672628 58 - 171882078 TGCTTCTGTGAATAAATAAAAATTTACCATTCCGTACAAACGCA-CTCGCTTTCCACAA---------------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          128062 58 +  25972781 CGCTTCTGTGAATAAATAAAAATTTACCATTCCGTACAAACGCA-CTCGCTTTCCACAA---------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           91827 58 -   1025902 CGCTTCTGTGAATAAATAAAAATTTACCATTCCGTACAAACGCA-CGCACTTTCCACAA---------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         77824 58 -    811265 CGCATCTGTGAATAAATAAAAATTTACCATTCCGTACAAACGCA-CGCACTTTCCACAA---------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          148638 58 +   1230721 CGCTTCTGTGAATAAATAAAAATTTACCATTCCCTACAAACGCA-CTCACTTTCCCCAA---------------
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104434 54 +    465904 CGCGTCTGTGAATAAATAAAAATTTATCCTTCCATACAAACGCA-CACG----ACGGAA---------------
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          167283 58 -    735872 CGCCTCTGTGAATAAATAAAAATTTATCATTCCATACAAACGCA-CGCGTTTTCCGCAA---------------
i cebCap1.NW_016107987v1       I 69 I 46
s otoGar3.GL873584                 69899 74 +  11138919 CGCTTCCGTGAATAAATAAAAATTTATCATTGCAGATGAACGCATTTCACTGTCTGCAAAGGACAGTTCAACAA
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=101112.000000
s hg38.chrX_KI270880v1_alt         17485 69 +    284869 -C-------AGTTTTTACACGAGCCGCG-----GTG-GCCCGGTG------GTGGCACGTGGGGAGCGG-CCCCGCGGCGGCGTTCTCGC
s panTro5.chrX                    122844 69 + 155549662 -C-------AGTTTTTACACGAGCCGCG-----GCG-TCCCGGTG------GTGGCACGTGGGGAGCGG-CCCCGCGGCGGCGTTCTCGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51137 69 +    105888 -C-------AGTTTTTACATGAGCCGCG-----GCG-TCCCGGTG------GTGGCACGTGGGGAGCGG-CCCCGCGGTGGCGTTCTCGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86786 68 +    417917 -C-------AGTTTTTACACGAGCCGCG-----GTGTTCCCGGTGGTGGCCGTGGCACGTGGGGAGCGG-CCCCGCGGCGGC--------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83004 68 + 149150640 -CAGACAAGAGTTTTTACACAAGCCGCG-----GGG-GCC-----------GCGGCCCGTGCAGAG-GG-GCCCGCGGTGGGGTCCCC--
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171672686 68 - 171882078 -CAGACAAGAGTTTTTACACAAGCCGCG-----GGG-GCC-----------GCGGCCCGTGCAGAG-GG-GCCCGCGGTGGGGTCCCC--
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          128120 68 +  25972781 -CAGACAAGAGTTTTTACACAAGCCGCG-----GTG-GCC-----------GCGGCCCGTGCAGAG-GG-GCCCGCGGTGGGGTCCCC--
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           91885 69 -   1025902 -AAGAGAACAGTTTTTACACAAGCCGCG-----GGG-GCC-----------GTGGCACGTACAGGG-GGCCCCCGCGGTGGGGTCCCC--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         77882 68 -    811265 -AAGAGAAGAGTTTTTACACAAGCCGCG-----GTG-GCC-----------GCGGCACGTGCAGAG-GA-CCCCGTGGTGGGGTCCCC--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          148696 73 +   1230721 -AAGACAAGAGTTTCTACACAAGACGCGCTGTCCGG-GCG-----------GTGGCACGTGCAGAG-GG-GCCCGCGGTGGGGTCCCC--
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104488 30 +    465904 --------CAGCTTccgggcg-gccgcg-----cgg-acc-----------cccgc----------------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 69973 57 +  11138919 CGAAACAGTTGTTTTCGCAGAGGCCACA-----GTG-TGC-----------ATGTCACA--------GT-AGCCACAGCACAC-------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167341 46 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=1143170.000000
s hg38.chrX_KI270880v1_alt         17554 181 +    284869 GGGCGGCGTCACAGCGGCTCCAGGTCCTCGTCCCCGCATGCGTACTCGTACAGGTCCACGGCGCCCAGCGGTGAGGGCGCCTCGAAGAAGGGCCTCTGGGCCAGCGGGGAGCGCAGCGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GATGGCGAAG
s panTro5.chrX                    122913 181 + 155549662 GGGCGGTGTCACAGTGGCTCCAGGGCCTCGTCCCCGCACGCGTACTCGTACAGGTCCACGGCGCCCAGTGGTGAGGGCGCCTCGAAGAAGGGCCTCTGGGCCAGCGGGGACCGCAGCGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GATGGTGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51206 181 +    105888 GGGCGGTGTCACAGTGGCTCCAGGGCCTCGTCCCCGCACGCGTACTCGTACAGGTCCATGGCGCCCAGTGGTGAGGGCGCCTCGAAGAAGGGCCTCTGGGCCAGCGGGGACCGCAGCGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GGTGGTGAAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           86854 173 +    417917 -------GTCACAGCGGCTCCAGGTCCTCGTCCCCACA-GTGTACTCGTACAGGTCCACGGCGCCCAGCGGTGAGGGCGCCTCGAAGAAGGGCCTCTGGGCCAGCGGGGACCGCAGCGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GATGGTGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83072 180 + 149150640 -GGCGGCCTCACAGCGGCTCCAGGTCCTCGTCCCCGCACGCGTACTCGTACAGGTCCACGGCGCCCAGGGGCGAGGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GGTGGTGAAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171672754 181 - 171882078 GGGCGGCCTCACAGCGGCTCCAGGTCCTCGTCCCCGCACGCGTACTCGTACAGGTCCACGGCGCCCAGGGGCGAGGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GGTGGTGAAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          128188 181 +  25972781 GGGCGGCCTCACAGCGGCTCCAGGTCCTCGTCCCCGCACGCGTACTCGTACAGGTCCACGGCGCCCAGGGGCGAGGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAAGGAGGG-GGTGCTGAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           91954 181 -   1025902 GGGCGGCCTCACAGCGGCTCCAGGTCCTCGTCCCCGCACGCGTACTCGTACAGGTCCACGGCGCCCAGGGGCGAGGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GGTGGTGAAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         77950 180 -    811265 -GGCGGCCTCACAGCGGCTCCAGGTCCTCGTCCCCGCACGCGAACTCGTACAGGTCCACGGCGCCCAGGGGCGAGGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GAAGGTGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          148769 181 +   1230721 GGGCGGCCTCACAGCGGCtccaggtcctcgtccccgcgcgcgtactcgtacaggtccacgGCGCCCAGGGGCGCGGGCGCCTCGAAGAAGGGCCTTTGGGCCAGCGGGGACCGCAGGGCACTCAGCTTCTGCTCCACAGGGCTGAGCTCGGCCTCGAACCTGCAACGAAGG-GATGGTGAAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104518 179 +    465904 gggc--TGTCACAGCGGCGACAGGTCCTCGTCCCCGCGCGCGAACTGGTACAGGTCCACGGCGCCCAGGGGCGACGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGCGACCGCAGCGCGCCCAGCTTCTGCTCCACGGGGCTGAGCTCGGCCTCGAACCTGCAACGAGGG-GACGGTGAAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          167387 181 -    735872 GGGCGGCGTCACAGCGGCTGCAGGTCCTCGTCCCCGCACGCGAACTCGTACAGGTCCACGGAGCCCAGGGGCGACGGCGCCTCGAAGAACGGCCTCTGGGCCAGCGGCGACCGCAGCGCACTCAGCTTCTGCTCCACGGGGCTGAGTTCGGCCTCGAACCTGCAACGAGAG-GATGGTGAAG
i cebCap1.NW_016107987v1       I 46 I 481
s otoGar3.GL873584                 70030 177 +  11138919 -----GTGTCACAGTGCCTGTAGGTCGTCATCCCCACATGCGAGCTCATACAGGTCGACAGCACCAAGAGCTGTCGGTGCCTCCAGGCAGGGCCTCTGGGCCAGAGGGGACCGCAGCGCGCTCAGCTTCTGCTCCACAGGGCTAAGGTCAGCCTCATACCTGCAATGAGTGTGTTGGTGAGG
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=19254.000000
s hg38.chrX_KI270880v1_alt         17735 6 +    284869 ACGTGG
s panTro5.chrX                    123094 6 + 155549662 ACGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51387 6 +    105888 ACGTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87027 6 +    417917 ACGTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83252 6 + 149150640 GCGGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171672935 6 - 171882078 GCGGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          128369 6 +  25972781 GCGGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           92135 6 -   1025902 GCGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         78130 6 -    811265 GTGGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          148950 6 +   1230721 ACGGGG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                104697 6 +    465904 CCGCAG
i saiBol1.JH378345             C 0 I 34
s otoGar3.GL873584                 70207 6 +  11138919 ACCTGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=65300.000000
s hg38.chrX_KI270880v1_alt         17741 24 +    284869 CCAGCAGCGCGG--AG-CAGGCCCTGG
s panTro5.chrX                    123100 23 + 155549662 CCAGCGGCACGG--AG-CGGGTCATG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51393 23 +    105888 CCAGTGGCACGG--AG-CGGGTCATG-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87033 24 +    417917 CCAGTGGCGCGG--AG-CGGGCCCTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83258 25 + 149150640 CCGGCGGCGCAG--AGCCAGGCCCTGG
i rheMac8.chrX                 C 0 I 9
s macFas5.chr7                 171672941 25 - 171882078 CCGGCGGCGCAG--AGCCAGGCCCTGG
i macFas5.chr7                 C 0 I 9
s macNem1.NW_012017243v1          128375 25 +  25972781 CCTGCGGCGCAG--AGCCAGGCCCTGG
i macNem1.NW_012017243v1       C 0 I 9
s cerAty1.NW_012001098v1           92141 25 -   1025902 CCGGCGGCGCAG--AGCCAGGCCCTGG
i cerAty1.NW_012001098v1       C 0 I 13
s chlSab2.chrUn_KE147541v1         78136 25 -    811265 CCGGCGGCGCAG--AGCCAGGCCCTGG
i chlSab2.chrUn_KE147541v1     C 0 I 9
s colAng1.NW_012115411v1          148956 25 +   1230721 CCGGCGGCGCAG--AGCCAGGCCCCAG
i colAng1.NW_012115411v1       C 0 I 10
s otoGar3.GL873584                 70213 27 +  11138919 CCATAGGCAGGGGCAGCCAGGTGGGGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e saiBol1.JH378345                104703 34 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=-18233.000000
s hg38.chrX_KI270880v1_alt         17765 5 +    284869 ---GCCGT
s panTro5.chrX                    123123 1 + 155549662 -------T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51416 1 +    105888 -------T
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87057 4 +    417917 ---GCC-G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83292 2 + 149150640 ---GT---
i rheMac8.chrX                 I 9 I 2
s macFas5.chr7                 171672975 2 - 171882078 ---GT---
i macFas5.chr7                 I 9 I 2
s macNem1.NW_012017243v1          128409 2 +  25972781 ---GT---
i macNem1.NW_012017243v1       I 9 I 2
s chlSab2.chrUn_KE147541v1         78170 2 -    811265 ---GT---
i chlSab2.chrUn_KE147541v1     I 9 I 2
s colAng1.NW_012115411v1          148991 2 +   1230721 ---GT---
i colAng1.NW_012115411v1       I 10 I 2
s otoGar3.GL873584                 70240 5 +  11138919 GACAT---
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e saiBol1.JH378345                104703 34 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e cerAty1.NW_012001098v1           92166 13 -   1025902 I

a score=286521.000000
s hg38.chrX_KI270880v1_alt         17770 91 +    284869 -----------TTTCCGGGAAACACAG-GCTGCTCGGCCGCCAACCTCCAGCACGAGACAGTCCCCTGAGCCGACCTTGAGCTCCAGCCGCTGAGCCAGCAAC
s panTro5.chrX                    123124 91 + 155549662 -----------TTTCCGGGAAATGCAG-GCTGCTCGGCGGCCAACCTCCAGCACGAGACAGTCCCCTGAGCCGACCTCAAGCTCCAGCCGCTGAGCCAGCAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51417 91 +    105888 -----------TTTCCGGGAAACGCAG-GCTGCTCGGCCGCCAACCTCCAGCACGAGACAGTCCCCTGAGCCGACCTCGAGCTCCAGCCGCTGAGCCAGCAAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87061 91 +    417917 -----------TTTCTGGGAAACGCAG-GCTGCTCGGCGGCCAACCTCCAGCACGAGACAGTCCCCTGAGCCGACCTCGAGCTCCAGCCGCTGAGCCAGCAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     83296 90 + 149150640 -----------TTTCCGGGACACGCAG-GCCGCCCGG-GCCCAGCCTCCAGCACCAGAACGTCCCCTGAGCCGACCCCGAGCTGCTGCCACTGAGCCAGCAAC
i rheMac8.chrX                 I 2 I 1978
s macFas5.chr7                 171672979 90 - 171882078 -----------TTTCCGGGACACGCAG-GCCGCCCGG-GCCCAGCCTCCAGCACCAGAACGTCCCCTGAGCCGACCCCGAGCTGCGGCCACTGAGCCAGCAAC
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          128413 89 +  25972781 -----------TTTCCGGGACACGCAG-GCCGCCCGG-GCCCAGCCTCCAGCACCAGAAAGTCCCCTGAGCCGA-CCAGAGCTGCGGCCACTGAGCCAGCAAC
i macNem1.NW_012017243v1       I 2 I 1746
s cerAty1.NW_012001098v1           92179 90 -   1025902 -----------TTTCCGGGACACGCAG-GCCGCCCGG-GCCCAGCCTCCAGCACCAGGAAGTCCCGTGAGCCGACCCCGAGCTGTGGCCGCTGAGCCGGCAAC
i cerAty1.NW_012001098v1       I 13 I 1373
s chlSab2.chrUn_KE147541v1         78174 90 -    811265 -----------TTTCCGGGACACGCAG-GCCGCCCGG-GCCCTGCCTCCAGCGAGAGAAAGTCCCCTGAGCCGACGCCGAGCTGCGGCCGCTGAGCCGGCAAC
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1          148995 91 +   1230721 -----------TTTCCGGGAAACGCAG-GCCGCCCGGCGACCAGCCTCCAGCACAAGAACGTCCCCTAAGCCGACCCTGAGCTGCGGCCGCTGAGCCAGCACC
i colAng1.NW_012115411v1       I 2 C 0
s otoGar3.GL873584                 70245 84 +  11138919 TGTCCTCCTCCTTGCCTGGGGA-GCAGTGCTGGTCTG------------AGCAGAACACACCCCAGTGAGCAGGATGTAAACTGTAGAAAC---ACCAGG---
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e saiBol1.JH378345                104703 34 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M

a score=27529.000000
s hg38.chrX_KI270880v1_alt         17861 30 +    284869 GCGCTCCTGGCTGAGGACGC--CGGCTCCACG
s panTro5.chrX                    123215 30 + 155549662 GCGCTCCTGGCTGAGGACGC--CGGCTCCACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51508 30 +    105888 GCGCTCCTGGCTGAGGACGC--CGGCTCCACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87152 30 +    417917 GCGCTCCTGGCTGAGAACGC--CGGCTCCACG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171673069 10 - 171882078 ----------------------AAGCTCCACG
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         78264 32 -    811265 AAGCTCCTGGCTGAGAAGACGGCGGCTCCACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          149086 32 +   1230721 ATGCTCCCGGCTGGGAAGCCGGCGGCTCCACG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 70329 26 +  11138919 GAGGTCCCTGTGGGGCAGGT--AGAGCC----
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e saiBol1.JH378345                104703 34 +    465904 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=62202.000000
s hg38.chrX_KI270880v1_alt         17891 39 +    284869 AATGCTCCCGGGGGAGGGGCCTGCGGTGCAGGTGAAAAC
s panTro5.chrX                    123245 39 + 155549662 AATGCTCCCGGGGTAGGGGCCTGCGGTGCAGGTGAAAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51538 39 +    105888 AATGCTCCCGGGATAGGGGCCTGCGGTGCAGGTGAAAAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87182 39 +    417917 CACGCTCCCGGGGGAGGGGCCAGCGGTGCAGGTGAAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171673079 38 - 171882078 AACGCGCCCGGGG-CGTGGCCTGCGGGGCAGGTGGAAAC
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         78296 39 -    811265 AACGCGCCCGGGGAAGTGGCCTGCGGGGCAGGTGGAAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          149118 39 +   1230721 CAGGCTCCCGGGGGAGTGGCCTGCGGCGCAGGTGGAAAC
i colAng1.NW_012115411v1       C 0 I 2227
s saiBol1.JH378345                104737 25 +    465904 AACGCTCCCTGGGGAGGGGCCTGTG--------------
i saiBol1.JH378345             I 34 C 0
s otoGar3.GL873584                 70355 31 +  11138919 ----CTCCCTGGGAA----CCTGGGCTGGACCACAAGGC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=-1630.000000
s hg38.chrX_KI270880v1_alt         17930 2 +    284869 -CC
s panTro5.chrX                    123284 2 + 155549662 -CC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51577 2 +    105888 -CC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87221 2 +    417917 -CC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171673117 2 - 171882078 -CC
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         78335 2 -    811265 -CC
i chlSab2.chrUn_KE147541v1     C 0 I 2755
s saiBol1.JH378345                104762 1 +    465904 --C
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 70386 2 +  11138919 AC-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=9375.000000
s hg38.chrX_KI270880v1_alt         17932 14 +    284869 ACCCAGGACGGGAC-
s panTro5.chrX                    123286 14 + 155549662 ACCCAGGATGGGAC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51579 14 +    105888 ACCCAGGATGGGAC-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87223 14 +    417917 ACCCAGGACGGGAC-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171673119 12 - 171882078 --GCAGAGCGAGAC-
i macFas5.chr7                 C 0 I 1273
s saiBol1.JH378345                104763 14 +    465904 TCACAGGACGGGCT-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 70388 14 +  11138919 -CTTGTGATGGGGAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=136974.000000
s hg38.chrX_KI270880v1_alt         17946 295 +    284869 GGAGCCCCGGGCGTGAGCTACACACAGAGG----------------ACCTGGGCGG-GCGCGCCTCTTCCCCAAAGCGA--------------------------------GCTGCAC-GGGACCTGTGTTTACA--ACTGGGTCGTGGTGTCCACACAGGACTGGAGAACAAA---------------CAGGAC---------------------CACA-GTTTAGACACATTCTCCCAAA----GCACA------GAAGCTCCCAGTGGAGGCTACCACTTCCGTTCTGACCAGAACACGCAGCAGTGCGAGGACTGGACGCGCGCCTT---------------CCCTTAAGGTCTCGGC-AGTGACGTCGGGCGCTGCTCCGGGGAACCCAGCGCGGCCACGGACCA
s panTro5.chrX                    123300 312 + 155549662 GGAGCCCCAGGCGTGAGCTACACACAGAGG----------------ACCCAGGCGG-GCGCGCCTTTTCCCCAAAGCGATATGACGGCGACTCTCAGAGGGCAGCCTCCGAGCTGCAC-GGGGCCTGTGTTTACACAATTGGGTCATGGTGTCCACACGGGAC-----------------------------------------------------CACA-GTTTAGACACATTCTCCCAAA----GCACA------GAAGCTCCTAGTGGAGGCCACCACTTCCGTTCTGACCAGAACACGCAGCAGTGCGAGGACTGGACGCGCGCCTT---------------CCCTTAAGGTCTCCGC-AGTGACATCGGGCGCTGCTCCGGGGAACCCAGCGCGGCCACAGACCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51593 312 +    105888 GGAGCCCCAGGCGTGAGCTACACACAGAGG----------------ACCCAGGCGG-GCGCGCCTTTTCCCCAAAGCGATATGACGGCGACTCTCAGAGGGCAGCCTCCGAGCTGCAC-GGGGCCTGTGTTTACACAATTGGGTCATGGTGTCCACACGGGAC-----------------------------------------------------CACA-GTTTAGACACATTCTCCCAAA----GCACA------GAAGCTCCTAGTGGAGGCCACCACTTCCGTTCTGACCAGAACACACAGCAGTGCGAGGACTGGACGCGCGCCTT---------------CCCTTAAGGTCTCCGC-CGTGACATCGGGCGCTGCTCCGGGGAACCCAGCGCGGCCACAGACCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87237 310 +    417917 GGAGCCCCAGGCGTGAGCTCCACACAGAGG----------------ACCCGGGCGG-GCGCGTCTTTTCCCCAGAGCGATACGACGGCGACTCTCAGAGGGCAGCCTCCGAGCTGCACGGGGGCCTGTGTTTACA--ACTGGGTCACGGTGTCCACACGGGAC-----------------------------------------------------CATG-GTTTAGACACATTCTCCCAAA-----CACA------GAAACTCCCCATGGAGGCCACCACTTCCGTTCTGAGCAGAACACGCAGCAGTGCGAGGACTGGACGCGCGCCTT---------------CCCTTAAGGTCTCGGC-AGTGACGTCGGGCACTGCTCCGGGGAACCCAGCGCGGCCACCGACCA
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                104777 321 +    465904 GGGGCCCCCCGCACGAGGTCCCCACAGCGGCCTTCCCAGTGGGGGAACCCGGGT-G-GCGCG----TTCCCCGGAGCCACGTGACAGTGA---------------CTCAGAGCAGCGC-TGGGCCGCCGGGGACG------TGCCGCGGTGTCCACGCGGGAAGCCAGAACGAA----------AC-CCCAGGATG-----GCAGGCGGAGCCACGCTCG-GCTTACACGGATTGTCCCAACACGCGCGCA------CGAGCTCC-----GGGG----------------GACCCGAACCCACGGCAGCACGAGGACTGGACGCGCGCCCG---------------CGGGGAGCGTCTCCG--GGTGACGGCGCGCACCGCTCCGGGGAGACCCGCGTGGCCACCAGCCG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 70402 327 +  11138919 -------------------------------------------------TGGGCAGTGACCATTATCTGCCCAAAGATGAATGACAGTGCTTGTTAGATGGCAAACCCAAGTGCACAT-GGAGC-----TCTAAA--AATCAGTC----TGTCCATGCATGGCTGGAAAGAGGACAGCACAGGGACACCAAGGATGACTACGCAGAAGGGGGGACGTATATGCTCAGGCAAATTCCTCTGAG----ACTTAACAGTGGGAGCT-------GAGGCCTCCTTGGCAGCTCTGG---AAACAC-CTACAGGATGGGG---TGACACGCCCTATTGTGGCTCAGTGGCACTCTTTGCTTCTATGCAAGAAATATCAC-TGTCTCTCCTGGGAACACA-CACAGCCTCAGCA--
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          167568 481 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=78806.000000
s hg38.chrX_KI270880v1_alt         18241 75 +    284869 CACAGA---CTCTCAGAGATCCT--GTGGGGACACCTCTGCTTTCCAAGACGCCCCCGACAGCCTGGCACTGAGCTCCCC
s panTro5.chrX                    123612 75 + 155549662 CACAGA---CTCTCAGAGATCCT--GTGGGGACACCTCTGCTTTCCAAGATGCCCCCCACAGCCCGGCACTGACCTCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51905 75 +    105888 CACAGA---CTCTCAGAGATCCT--GTGGGGACACCTCTGCTTTCCAAGATGCCCCCGACAGCCTGGCACTGAGCTCCCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87547 75 +    417917 CACAGA---CGCTCAGAGATCCT--GTGGGGACACCTCTGCTTTCCAAGACGCCCCCCACAGCCTGGCATAGAGCTCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                105098 77 +    465904 CACGGA---CCGTCGGAGGGACCCTGCGTGGACACGTCTGCTCTCCAAGACGCCCCCCGCAGCCTGGCGCGAAGCTCCCC
i saiBol1.JH378345             C 0 I 6
s cebCap1.NW_016107987v1          168049 75 -    735872 CACAGA---CCCTCGGAGATGCC--GTGTGGACATGTCTGCTCTACAAGACACCCCCCGAAGCCTGGCGCTGAGCTCCCC
i cebCap1.NW_016107987v1       I 481 I 109
s otoGar3.GL873584                 70729 61 +  11138919 CACAGGGCCCTTTTCCTCGTCCC--ACTGAGATGCTGCTGCTCCTAAAAA-----------------CACTGAGGTCCCC
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=17440.000000
s hg38.chrX_KI270880v1_alt         18316 32 +    284869 ----------GCGGTCACC-C---CCACGGACCTGAGCTCCCACTG
s panTro5.chrX                    123687 32 + 155549662 ----------ATGGTCACC-C---CCACGGACCTGAGCTCCCACTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     51980 32 +    105888 ----------GCGGTCACC-C---CCACGGACCTGAGCTCCCACTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87622 32 +    417917 ----------GCGGTCACC-C---CCACGGACCTGAGCTCCCACTG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                105181 35 +    465904 ----------CCGGTCACC-CCGGCCCCGGACGTGCGTGCGGCCAG
i saiBol1.JH378345             I 6 C 0
s otoGar3.GL873584                 70790 40 +  11138919 AGTGCCACCAGCACTCACTGT---CGATGGGCCTGGGCCACTA---
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168124 109 -    735872 I
e nomLeu3.chrX                     20746 1337 + 141252148 M
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=51393.000000
s hg38.chrX_KI270880v1_alt         18348 85 +    284869 CCGGAGCAGGCGTGGACACGGTGAAGGC--AGTCGACCCCAGCGTGCTGCTGGC--------------TGTGCCGCAGACACAAAGCCGGGCAGCCGTGGG
s panTro5.chrX                    123719 85 + 155549662 CCGGAGCAGGTGTGGACATGGTGAAGGC--AGTCGACCCCAGCATGCTGCTGGC--------------TGTGCAGCAGACACAAAGCTGGGCAGCGGTGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52012 85 +    105888 CCGGAGCAGGTGTGGACACGGTGAAGGC--AGTCGACCCCAGCGTGCTGCTGGC--------------TGTGCGGCAGACACAAAGCTGGGCGGCGGTGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87654 84 +    417917 CCGGAGCAGGCGTGGACACGGTGAAGGC--AGTCGACCCCAGC-TGCTGCTGGC--------------TGTGCTGCGGACACAAAGCCGGGCGGCCGTGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22083 51 + 141252148 CCAGAGCA-GCGTAGACACGGGGAAGGC--AGTCGACCCCAGTGTGGTGCTGGC-----------------------------------------------
i nomLeu3.chrX                 M 1337 C 0
s saiBol1.JH378345                105216 68 +    465904 CCAGGGCGGCTGTGGACACGGGGAAGG------------TGGCGCGTGGCTACC---------------------CGAGCGCGGGGCCGGGCGGCGATGGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 70830 98 +  11138919 -TGAAGCAGGAGTGCACAATGGGAGTCCCTGGTGAATCTCACC-CAATGCTGGGGAAGAAATGACATGTCTTCCACATACACCCATCCAGA-AACCATGGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168124 109 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=14850.000000
s hg38.chrX_KI270880v1_alt         18433 11 +    284869 GGTGGACACTG
s panTro5.chrX                    123804 11 + 155549662 GGTGGACTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52097 11 +    105888 GGTGGACTCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87738 11 +    417917 GGTGGACTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22134  5 + 141252148 ------CACTG
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105284 11 +    465904 GGTGCACGCCG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          168233 11 -    735872 GGTGGACACTG
i cebCap1.NW_016107987v1       I 109 C 0
s otoGar3.GL873584                 70928 11 +  11138919 GAAGGCCCCTG
i otoGar3.GL873584             C 0 I 168
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=23418.000000
s hg38.chrX_KI270880v1_alt         18444 13 +    284869 GTCAGGTGGGGAG
s panTro5.chrX                    123815 13 + 155549662 GTCAGGTGGGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52108 13 +    105888 GTCAGGTGGGGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87749 13 +    417917 GTCAGGTGGGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22139 13 + 141252148 GTCAGGTGGGGAG
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105295 12 +    465904 GTCAGG-GGGGAG
i saiBol1.JH378345             C 0 I 34
s cebCap1.NW_016107987v1          168244 13 -    735872 GTCAGGTGGGGAG
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                 70939 168 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=3100.000000
s hg38.chrX_KI270880v1_alt         18457 3 +    284869 CAG
s panTro5.chrX                    123828 3 + 155549662 CAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52121 3 +    105888 CAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87762 3 +    417917 CAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22152 3 + 141252148 TGG
i nomLeu3.chrX                 C 0 C 0
s cebCap1.NW_016107987v1          168257 3 -    735872 CAG
i cebCap1.NW_016107987v1       C 0 I 2047
e saiBol1.JH378345                105307 34 +    465904 I
e otoGar3.GL873584                 70939 168 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=93118.000000
s hg38.chrX_KI270880v1_alt         18460 105 +    284869 AGGTGACAGACGGTGGTGGGGACAGGCGCACACCCATCCAGGCTAGGTCTGGGGGCCACAGCTGCCTTAGGGTGTCCGACAGGAGAAGGCAGAGACTGGGAAGTT
s panTro5.chrX                    123831 105 + 155549662 AGGTGACAGATGGTGGTGGGGACAGGCGCACACCCATCCAGGCTAGGTCTGGGGGCCACGGCTGCCTTAGGGTGTCCGACAGGAGAAGGCAGAGACTGGGAAGTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52124 105 +    105888 AGGTGACAGATGGTGGTGGGGACAGGCGCACACCCATCCAGGCTAGGTCTGGGGGCCACGGCTGCCTTAGGGTGTCCGACAGGAGAAGGCAGAGACTGGGAAGTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87765 105 +    417917 AGGTGAGAGACGGTGGTGGGGACAGGCGCACACCCATCCAGGCTAGGTCTGGGGGCCACGGCTGCCTTAGGGTGTCCGACAGGAGAAGGCAGAGACTGGGAAGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22155 103 + 141252148 AGATGACAGACGGTGGTGGGGACAGGCGCACACTCATCCAGGCTATGTCTGGGGGCCACAGCTGCCCCAGGGTGTCCGGCAGGAGAAGGC--AGACTGGGAAGTT
i nomLeu3.chrX                 C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                105307  34 +    465904 I
e otoGar3.GL873584                 70939 168 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1          149157 2227 +   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=66723.000000
s hg38.chrX_KI270880v1_alt         18565 70 +    284869 GT-------GGGGACCCAGAGGTTGGCTGCCAGGTCAGAGCCACCGTG--CAAACAA-TGACCACGAGGAGGACGGACAC
s panTro5.chrX                    123936 72 + 155549662 GT-------GGGGACCCAGAGGTTGGCTGCCAGGTCAGAGCCACGGTGCACACACAA-TGACCACGAGGAGGACGGACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52229 70 +    105888 GT-------GGGGACCCAGAGGTTGGCTGCCAGGTCAGAGCCACGGTG--CACACAA-TGACCACGAGGAGGATGGACAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87870 70 +    417917 GT-------GGGGACCCAGAGGTTGGCTGCCAGGTCAGAGCCAGTGTG--CAAACAA-TGACCACGAGGAGGACAGACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22258 66 + 141252148 GTGGGGGGCGGGGACCCAGAGGTTGGCTGCCAGGTCAGAGCCACTGCA--------------CACGAGGAGGACGGACAC
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080491 70 -   1230721 GT-------GGGGACCCAGAGGTGGGCGTCCAGGTCAGAGCCACGGTG--CGGACAACTGACCACT-GAGGGACAGATGC
i colAng1.NW_012115411v1       n 2227 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                105307 34 +    465904 I
e otoGar3.GL873584                 70939 168 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=17685.000000
s hg38.chrX_KI270880v1_alt         18635 17 +    284869 ACAGGACAGACGGCC--CA
s panTro5.chrX                    124008 19 + 155549662 ACAGGACAGACGGCCGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52299 17 +    105888 ACAGGACAGACGGCC--CA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87940 17 +    417917 ACAGGACAGACGGCC--CA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22324 17 + 141252148 ACAGGACAGACGGCA--CA
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080561 17 -   1230721 CCAGGACAGACGGCC--CA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 71107 17 +  11138919 TTGGGACACTTCCCC--GA
i otoGar3.GL873584             I 168 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                105307 34 +    465904 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=128735.000000
s hg38.chrX_KI270880v1_alt         18652  92 +    284869 GGGTGGGCCGC-AGGGGCCCTGTGCT---------GCTTGGC-------AGGAATCGGACGGGGCGGCTGATGGGGGAGCAGGGGTTAAAATGCACGTCCATGGAACCC----
s panTro5.chrX                    124027  92 + 155549662 GGGTGGGCCGT-GGGGGCCCTGGGCT---------GCTTGGC-------AGGAATCGGACGGGGCGGCTGATGGGGTAGCAGGGATTAAAATGCACGTCCATGGAACCC----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52316  92 +    105888 GGGTGGGCCGT-GGGGGCCCTGGGCT---------GCTTGGC-------AGGAATCGGACGGGGCAGCTGATGGGGTAGCAGGGATTAAAATGCACGTCCATGGAACCC----
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           87957  92 +    417917 GGGTGGGCCGC-GGGGGCCCTGTGCT---------GCTTGGC-------AGGTATCGGACGGGGCAGCTGATGGGAGAGCAGGGGTTAAAATGCACGTCCATGGAACCC----
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22341  93 + 141252148 GGGTGGGCTGCGGGGGGCCCTGTGCT---------GCTTGGC-------GGGAATCGGATGGGTTGGCTGATGGGGGAGCAGGGGTTAAAATGCAGCTCCATGGAACCC----
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080578  92 -   1230721 GGGTGGGCCGC-GGGGGCCCTGGGCT---------GCTTGGC-------GGGAACCGGACGGGGCGGCTGGAGGGGGAGCCGGGGTTAAGATGCGCCTCCATGGAACCC----
i colAng1.NW_012115411v1       C 0 I 8
s saiBol1.JH378345                105341  90 +    465904 GGGTGCGCAGC-GGGAGCCCCAAGC----------GCTCGGC-------AGGAATGGGACGGG-CGTCCGGGGAGAGGGCAGGGGTTACCGGGACGCTCTGTGGCGCCC----
i saiBol1.JH378345             I 34 C 0
s otoGar3.GL873584                 71124 104 +  11138919 GGATGGGGAGG-AAGGACCCTCTGCTCTCACACCAGCCCAGCACCCTAGAGGTCCCAGGCAGTGCGCCACATGGGAGA--------TGAAATAAATGTACCTGGAACACTGCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=15199.000000
s hg38.chrX_KI270880v1_alt         18744 21 +    284869 -----ATGGGTCGGGAACCC-----AACGGT---
s panTro5.chrX                    124119 21 + 155549662 -----ATGGGTCGGGAACCC-----AACGGT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52408 21 +    105888 -----ATGGGTCGGGAACCC-----AACGGT---
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88049 21 +    417917 -----GTGGGTCGGGAACCC-----AACGGT---
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22434 21 + 141252148 -----GTGGGTCGGGAACCA-----AACGGT---
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105431 15 +    465904 -----GTGGGTCGGGAACGT--------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71228 32 +  11138919 ACAGAGTAAGACAG--ACCCGTTCAGGCAGTGAG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1080670  8 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=38669.000000
s hg38.chrX_KI270880v1_alt         18765 31 +    284869 AACCAGAAAGTATTTT--GAGCTG-CACCAAAAT
s panTro5.chrX                    124140 31 + 155549662 AACCAGAAAGTATTTT--GAGCTG-CACCAAAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52429 31 +    105888 AACCAGAAAGTATTTT--GAGCTG-CACCAAAAT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88070 32 +    417917 AACCAGAAACTATTTT--GAGCTGCCACCAAAAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22455 31 + 141252148 AACCAGAAGGTATTCT--GAGCTG-CACCCAAAT
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080678 31 -   1230721 AACCAGAAAGTAGTTT--GAGCTG-CACCAAAAT
i colAng1.NW_012115411v1       I 8 I 209
s saiBol1.JH378345                105446 26 +    465904 -----GAAAGTATTTG--GAGCGA-CCTGTAAAT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71260 22 +  11138919 AACCTGAAAGAGCTTTCAGAGC------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=44803.000000
s hg38.chrX_KI270880v1_alt         18796 72 +    284869 --CAGAAGGCC---GCGGGCTGCGGTGTCCATGGCCCACGTCGCTGCCTGAAGATACTCAAGG-----AAAACAGCAGAACA
s panTro5.chrX                    124171 72 + 155549662 --GAGAAGGCC---ATGGGCTGTGGTGTCCATGGCCCACGTCGCTGCCTGAAGATACTCAAGG-----AAAACAGCAGAACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52460 72 +    105888 --GAGAAGGCC---ATGGGCTGTGGTGTCCATGGCCCACGTCGCTGCCTGAAGATACTCAAGG-----AAAACAGCAGAACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88102 72 +    417917 --GAGAAGGCC---GCGGGCTGCGGTGTCCGTGGCCCATGTCGCTGCCTGAAGATACTCAAGG-----AAAACAGCAGAACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22486 75 + 141252148 --GAGAGGGCC-----GGGCTGCGGTGTCAATGGCCCAAGTTGCTGCCCGCAGATACTCAAAGACAACAAAACAGCAGAACA
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105472 51 +    465904 --GAGAACGCCTGAGTCGGCCGCGGG----------------------TGAAGGCA--CGAGG-----AGACCAGAAGGACA
i saiBol1.JH378345             C 0 I 31
s otoGar3.GL873584                 71282 38 +  11138919 TAGAAAATGTT------------------TGTACCACACatgagcaactggaaacg--------------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1080709 209 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=8311.000000
s hg38.chrX_KI270880v1_alt         18868 12 +    284869 A----AGGGGAGAAAC--
s panTro5.chrX                    124243 12 + 155549662 A----AGGGGAGAAAC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52532 12 +    105888 A----AGGGGAGAAAC--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88174 12 +    417917 A----AGGGGAGAAAC--
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22561 16 + 141252148 AAGACAGGAGAGAAAA--
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584                 71320 14 +  11138919 a----aagtgagaaaagc
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                105523 31 +    465904 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1080709 209 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=91587.000000
s hg38.chrX_KI270880v1_alt         18880 124 +    284869 ACCCGTGGT-------TCCCTGGGAAGAGGAGTGAAC-CTCGTCGGCCCCTCGC----CTCACTGA----TCACACACA-----------AAGTCAGTATCAGGAGC----GTGAGAGACGC----------------TATCAC--TGGATTC-------------TGCAGACATCAGAGTCACGA
s panTro5.chrX                    124255 124 + 155549662 ACCCGTGGT-------TCCCTGGGAAGAGGAGTGAAC-CTTGTCAGCCCCTCGC----CTCACTGA----TCACACACA-----------AAGTCAGTATCAGGAGC----GTGAGAGATGC----------------TATCAC--TGGATTC-------------TGCAGACATCAGAGTCACGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52544 124 +    105888 ACCCGTGGT-------TCCCTGGGAAGAGGAGTGAAC-CTCATCGGCCCCTCGC----CTCACTGA----TCACACACA-----------AAGTCAGTATCAGGAGC----GTGAGAGACGC----------------TATCAC--TGGATTC-------------TGCAGACATCAGAGTCACGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88186 127 +    417917 ACCCGTGGT-------TCCCTGGGAAGAGGAGTGAAC-CTCGTCGGCCCCTCGC----CTCACTGA----TCACACACAG--------ACAAGTCAGTATCAGGAAC----GTGAGAGACGC----------------TATCAC--TGGATTC-------------TGCAGACATCAGAGTCACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22577 135 + 141252148 ACCAGTGGTTCAATCATCCTTGAGACGATGATTGAAC-CTCATCGTCCCTTCGC----CTCACTGA----GCACACACAG--------ACAAGTCAGTCTCAGGAAT----GCAAGAGAAGC----------------TATCGCCGTGGATTC--------------GCAGACGTTAAAGTCACAA
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105554 127 +    465904 ACTCGTGGT-------TCCGTGAGGA---GACTGGAA-TCCGTCGCCCTCACCC----CT-GCCGA----TCATGCAGAAAAA----CACGAATCGGCATCAGGCAC----GCGGGAGAGGC----------------CAGCCCCGTGGGAGC-------------TGCAGGTGCTAAACTCA--A
i saiBol1.JH378345             I 31 C 0
s otoGar3.GL873584                 71334 177 +  11138919 accttttgc-------aacatgaaaaaattatgaaatactcagagaacactctcaaaattcacataaaatccatacatagaaagcacgaaatgccagtgcgagaagtcagagtgggccaggcatttgcattgctgggatgtcac--tgggctcccatgtcagtctgtgcattcatcaaaattgcaa
i otoGar3.GL873584             C 0 I 48
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1080709 209 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=42485.000000
s hg38.chrX_KI270880v1_alt         19004 47 +    284869 GCAGGAAA---TACCA---ACAATAAC----CCACTGATGGGAACGGGCAAGTTTCC
s panTro5.chrX                    124379 47 + 155549662 ACAGGAAA---TACCA---ACGATAAC----CCACTGATGGGAACGGGCAAGTTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52668 47 +    105888 ACAGGAAA---TACCA---ACGATAAC----CCACTGATGGGAACGGGCAAGTTTCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88313 47 +    417917 GCAGGAAA---TACCA---ACAATAAC----CCACTGATGGGAACGGGCAAGTTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22712 50 + 141252148 GCAGAAAATATTATCA---ACAGTAAC----TCACTGATGTGACTGGGCGAGTTTCT
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105681 54 +    465904 GCAGGAAA---CATCACGGGCAGTAACGAAATCACTTGGGTGAGCAGACAAGTGTCT
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e otoGar3.GL873584                 71511 48 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1080709 209 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt         19051 1 +    284869 G
s panTro5.chrX                    124426 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52715 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88360 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     22762 1 + 141252148 G
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080918 1 -   1230721 G
i colAng1.NW_012115411v1       I 209 C 0
s saiBol1.JH378345                105735 1 +    465904 G
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e otoGar3.GL873584                 71511 48 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=119816.000000
s hg38.chrX_KI270880v1_alt         19052  79 +    284869 AAACACACAAACCAGCAAAGCTCACTCAAGGCTG-Gg-------------------------caggggctcacacctgtaattccggcac------gttgggggaccgagg
s panTro5.chrX                    124427  79 + 155549662 AAACACACAAACCCGCAAAGCTCACTCAAGGCTG-Gg-------------------------cgggggctcacgcctgtaattccagcac------gttgggggaccgagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52716  79 +    105888 AAACACACAAACCCGCAAAGCTCACTCAAGGCTG-Gg-------------------------cgggggctcacgcctgtaattccggcac------gttgggggaccgagg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           88361  79 +    417917 AAACACACAAACCAGCAAAGCTCACTCAAAGCTG-Gg-------------------------cgggggctcacgtctgtaattccggcac------tttgggaggccgagg
i gorGor5.CYUI01015925v1       C 0 I 769
s nomLeu3.chrX                     22763  79 + 141252148 AAACACACAAACCAGCAAAGCTCACTCAAGGCTG-Gg-------------------------cgggggctcacgcctgtaactccagcac------gttgggggaccgagg
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1080919  85 -   1230721 AAACACACAAACCAGCAAAGCTCACTCCAggctg-gg-------------------------ccggggctcatgcctgtggttcaagcacggtgcaggtgcggggccgggg
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                105736  79 +    465904 GAGCGCACAAACCCGCAAAGCTCCCCGAgggcggagg-------------------------tggcaactcaggcctgtcatcccagcac------tgtggggccccagg-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71559 104 +  11138919 aagcaaagaaaccagaacagctaacacaatGTGG-GGGGAAGGGGGAACCACTAGGcaggcacagtggctctcgcccataatcctagcac------tttgatggtgagtgg
i otoGar3.GL873584             I 48 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=117922.000000
s hg38.chrX_KI270880v1_alt         19131 124 +    284869 cggggagaaccctcgagctcaggcatccaagaccaacctgggcaacacggtgaaaccccatctcta-caaaaaaatacaaaaaagtagcc-gggtgtggtggtgcgtgcctggaagcccagctact
s panTro5.chrX                    124506 124 + 155549662 cggggagaaccctcgagctcaggcatccgagaccaacctaggcaacacggcgaaaccccatctcta-aaaaaaaatacagaaaagtagcc-gggtgtggtggtgcgtgcctgtaatctcagccact
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52795 124 +    105888 cggggagaaccctcgagctcaggcatccgagaccaacctaggcaacacggcgaaaccccatctcta-aaaaaaaatacaaaaaagtagcc-gggtgtggtggtgcgtgcctgtaatctcagccact
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     22842 124 + 141252148 cggggagaacccttgcgctcaggtgttcaagaccagcctgggcaacatgccaaaaccccatctctacaaaaaaaataca-aaaattagcc-gggtgtggtggtgggtgcctgtaatcccagctact
i nomLeu3.chrX                 C 0 I 454
s colAng1.NW_012115411v1         1081004 122 -   1230721 cgggcagaaccctagagctcagg--ttcaagaccagcctgggcaacagggcgaaa-cccatctgtacaaaaacaatgta-aaaattagccggggtgtggtggcaggtgcctgtaatgccagctact
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                105815  98 +    465904 cgcgcaggacccttgagctcacgtgttcaggaccagcct-------------acactcggtctcca-----------ca-aaaactagcc-gggtgtggggg--cgctcccgtcattccggctgct
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71663 104 +  11138919 ------------------tctggagttggacaccagcctgggaaacatagcaagaccccatctcta--aaaaaaaaaaa-agaactagtc-aggtgtgttgctggggggctgtagtcctggctact
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I
e gorGor5.CYUI01015925v1           88440 769 +    417917 I

a score=21788.000000
s hg38.chrX_KI270880v1_alt         19255 24 +    284869 cgg-ggggctcagg---tgcgaggattc
s panTro5.chrX                    124630 24 + 155549662 cgg-ggggctcagg---tgcgaggattc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52919 24 +    105888 cgg-ggggctcagg---tgcgaggattc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     23420 24 + 141252148 cag-gaggctgagg---ctggaggatcg
i nomLeu3.chrX                 I 454 C 0
s colAng1.NW_012115411v1         1081126 25 -   1230721 cggcggggctgagg---tgtgaggatcc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                105913 27 +    465904 ccg-gggccccagtctccggggggatcc
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71767 24 +  11138919 tgg-gaggctgaga---caggaggatta
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I
e gorGor5.CYUI01015925v1           88440 769 +    417917 I

a score=39696.000000
s hg38.chrX_KI270880v1_alt         19279 20 +    284869 cttaagcccagcaggtggag
s panTro5.chrX                    124654 20 + 155549662 cttaagcccagcaggtggag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     52943 20 +    105888 cttaagcccagcaggtggag
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89209 20 +    417917 cttgagcccaggaggttgag
i gorGor5.CYUI01015925v1       I 769 C 0
s nomLeu3.chrX                     23444 20 + 141252148 cttgagcccaggaggtggag
i nomLeu3.chrX                 C 0 C 0
s colAng1.NW_012115411v1         1081151 20 -   1230721 cttaagcccgggaggtggag
i colAng1.NW_012115411v1       C 0 n 0
s saiBol1.JH378345                105940 20 +    465904 ctgaagcccgggaggtggag
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71791 20 +  11138919 cctgagcccaggtgctagag
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=86516.000000
s hg38.chrX_KI270880v1_alt         19299 65 +    284869 ggtgcagtgagctgagattgcgccaatgccctccagcctgcgtgacacagcc-agaccctgtctcc
s panTro5.chrX                    124674 65 + 155549662 gctgcagcgagctgagattgcgccaatgccctccagcctgcgtgacacagcc-agaccctgcctcc
i panTro5.chrX                 C 0 I 1124
s panPan2.chrUn_NW_014024225v1     52963 65 +    105888 gctgcagcgagctgagattgcgccaatgccctccagcctgcgtgacacagcc-agaccctgcctcc
i panPan2.chrUn_NW_014024225v1 C 0 I 1124
s gorGor5.CYUI01015925v1           89229 65 +    417917 gctgcagtgagctgagatcccgccaccaccctctagcctgggtggcagagtg-agaccctgtctca
i gorGor5.CYUI01015925v1       C 0 I 1
s nomLeu3.chrX                     23464 65 + 141252148 gctgcagtgagctgagatcacaccaccgccctctagcgtgggtgacagagca-agaccctgtctca
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                105960 65 +    465904 gctgcagggagccgagactgtgccactgcactccagcctgcatgacagagcc-agaccctgtctcc
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71811 66 +  11138919 gctgcagtgagctgtgattgagcccctgcactccagcctaggggacagagttgagacgttgactct
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=7644.000000
s hg38.chrX_KI270880v1_alt         19364 4 +    284869 aaaa
s panTro5.chrX                    125863 4 + 155549662 aaaa
i panTro5.chrX                 I 1124 C 0
s panPan2.chrUn_NW_014024225v1     54152 4 +    105888 aaaa
i panPan2.chrUn_NW_014024225v1 I 1124 C 0
s gorGor5.CYUI01015925v1           89295 4 +    417917 aaaa
i gorGor5.CYUI01015925v1       I 1 C 0
s nomLeu3.chrX                     23529 4 + 141252148 aaaa
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                106025 4 +    465904 aaaa
i saiBol1.JH378345             C 0 I 1585
s otoGar3.GL873584                 71877 4 +  11138919 aaaa
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=13096.000000
s hg38.chrX_KI270880v1_alt         19368 19 +    284869 aaataataaaaTActacag--
s panTro5.chrX                    125867 19 + 155549662 aaataataaaatactccag--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     54156 19 +    105888 aaataataaaatactctag--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89299 19 +    417917 aaataataaactactacag--
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     23533 19 + 141252148 aaataaaaaaaTACTACAG--
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584                 71881 19 +  11138919 --ataatacaaaTTTTTAAAG
i otoGar3.GL873584             C 0 I 67
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=172951.000000
s hg38.chrX_KI270880v1_alt         19387 221 +    284869 ataatctctgcaaagagaatccagtaatatgtgaggataacacatgactcggcaagatctatcctgggaacacgaggctggctgaaaatgactcggtgtaactcgctgtatggacacacagaggaaccacggagcgaaagcatctga-GAAATTCGGCCCCCACTGCGAG--AAAGCCCCCGCAGACCAGGAAGAGG-GAGAACATCCTCGCCAATGAGCGTGCT
s panTro5.chrX                    125886 221 + 155549662 ataatctctgcaaagagaatccagtaatatgtgaggataacatatgactcggcgagatctatcctgggaacacgaggctggctgaaaatgactcggtgtaactcactgtatggacacacagaggaaccacggagcgaaagcatctga-GAAATTCGGCCCTCACTGTGAG--AAAGCCCCCGCAGACCAGGAACAGG-GAGAAGATCCCCGCCAATGAGTGTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     54175 221 +    105888 ataatctctgcaaagagaatccagtaatatgtgaggataacatatgactcggcgagatctatcctgggaacacgaggctggccgaaaatgactcggtgtaacccgctgtatggacacacagaggaaCCACGGAGCGAAAGCATCTGA-GAAATTCGGCCCTCACTGTGAG--AAAGCCCCCGCAGACCAGGAACAGG-GAGAAGATCCCCGCCAATGAGCGTGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89318 224 +    417917 ataatctctgcaaagagaatccagtaatatgtgaggataacatatgactcggcgagatctatcctgggaacacgaggctggctgaaaatgactcggtgtaactcactgtatggacacacagaggaaccatggagcgaaagcatctga-gaaattcggcccccactgtgagaaaaagcccccgcagaccaggaacaggctaggacatcctcGCCAATGAGCGTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     23552 217 + 141252148 ACAATCTGTGCAAAAAACATCCAGTAATATGTAAGGATAATGTATGACTCAGTAAGCTCTATCCTGGGAACAGAAGGCTGGCTG---ATGACTCGGTGTAACTCGCTGTATGG----ACAGAGGAACCACGGGGTGAAACCCTCTGAGGAAACTCGGCCCCCATCGCGAG-AAAAGCCTCCGCAGACCAGGAACAGGCCAGGACATCCTCGCCAATGAGCGTGAT
i nomLeu3.chrX                 C 0 C 0
e cebCap1.NW_016107987v1          168260 2047 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e otoGar3.GL873584                 71900  67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=53988.000000
s hg38.chrX_KI270880v1_alt         19608 42 +    284869 TACCGCTGCGTGAGGGGAGACGTCCCCCAGGACTGGGAACGA
s panTro5.chrX                    126107 42 + 155549662 TACCACTGCGTGAGGGGAGACGTCCCCCAGGACTGGGAACGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     54396 42 +    105888 TACCGCTGCGTGAGGGGAGACGTCCCCCAGGACTGGGAACGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89542 42 +    417917 TACCGCTGCGTGAGGGGAGACGTCCCCCAGGACTGGGAACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     23769 41 + 141252148 TACTGCTGCGTGAGGGGAGACGT-CCCCAGGACTGGGAACGA
i nomLeu3.chrX                 C 0 C 0
s cebCap1.NW_016107987v1          170307 42 -    735872 TACTGCTGCGTCAGGGGAGACGGCCCCCAGGGCTGGGAACGA
i cebCap1.NW_016107987v1       I 2047 I 2104
e saiBol1.JH378345                106029 1585 +    465904 I
e otoGar3.GL873584                 71900 67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=88258.000000
s hg38.chrX_KI270880v1_alt         19650 102 +    284869 GGACGGCACACAAACCAGCAGGGCTCACTCAAGGCTGGCCGTGGTCTGCCCTGACATCCACCACATCTCCCTGCGGgttccaggccatgcagcaggcaagag
s panTro5.chrX                    126149 102 + 155549662 GGACGGCACACAAACCAGCAGGGCTCACTCAAGGCTGGCCGTGGTCTGCCCTGACATCCACCACATCTCCCTGCGGGTTCCAGGCCGTGCAGCGGGCAAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     54438 102 +    105888 GGACGGCACACAAACCAGCAGGGCTCACTCAAGGCTGGCCGTGGTCTGCCCTGACATCCACCACATCTCCCTGCGGGTTCCAGGCGGTGCAGCGGGCAAGAG
i panPan2.chrUn_NW_014024225v1 C 0 I 140
s gorGor5.CYUI01015925v1           89584 102 +    417917 GGACGGCACACAAACCAGCAGGGCTCACTCAAGGCTGGCCGTGGTCTGCCCTGACATCCACCACATCACCCTGCGGGTTCCAGGCCGTGCAGCGGGCAAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     23810  99 + 141252148 GGGTGGCACAGAAACCAGCAAGGCTCACTCAAGGCTGGGCGTGCTCTGCCCTGACAt---ccacatcaccctgcgggttccaggccgtgcagcgggcaagag
i nomLeu3.chrX                 C 0 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e otoGar3.GL873584                 71900  67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=4730.000000
s hg38.chrX_KI270880v1_alt         19752 5 +    284869 aaagg
s panTro5.chrX                    126251 5 + 155549662 AAAGG
i panTro5.chrX                 C 0 I 166
s panPan2.chrUn_NW_014024225v1     54680 5 +    105888 aaagg
i panPan2.chrUn_NW_014024225v1 I 140 C 0
s gorGor5.CYUI01015925v1           89686 5 +    417917 AAAGG
i gorGor5.CYUI01015925v1       C 0 I 57
s nomLeu3.chrX                     23909 5 + 141252148 aaagg
i nomLeu3.chrX                 C 0 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e otoGar3.GL873584                 71900 67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=133906.000000
s hg38.chrX_KI270880v1_alt         19757 159 +    284869 aagtaacgtacacagagaggtgaaaaggaagacgagagacggacccactgacagacatgggctgtccacgcagaaaaccccaaagaaccgacagagctttgagatccagtaagtgagtttcatgaaggtgcaaaacacaaggtcaataaattctatatg
s panTro5.chrX                    126422 159 + 155549662 AAGTAACGTACACAGAGAGGTGAAAAGGAAGACGAGAGACGGACCCACTGACAGACATGGCCTGTCCACACAGAAAACCCCAAAGAACCGACAGAGCTTTGAGATCCAGTAAGTGCGTTTCATGAAGGTGCAAAACACAAGGTCAATAAAttctatatg
i panTro5.chrX                 I 166 C 0
s panPan2.chrUn_NW_014024225v1     54685 159 +    105888 aagtaacgtacacagaggggtgaaaaggaagacgagagacggacccactgacagacatggcctgtccacacagaaaaccccaaagaaccgacagagctttgagatccagtaagtgcgtttcatgaaggtgcaaaacacaaggtcaataaattctatatg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89748 159 +    417917 aggtaacgtacacagaggggtgaaaaggaagacgagaaacagacccactgacagacatgggctgtccacgcagaaaaccccaaagaaccgacagagctttgagatccagtaagtgcgtttcatgaacgtgcaaaacacaaggtcaataaattctatatg
i gorGor5.CYUI01015925v1       I 57 C 0
s nomLeu3.chrX                     23914 157 + 141252148 aagtaacgtacccagacgggtgaaaagcaggacgagaaacagacccactgacagacatgggctgtccacgcagaaaaccccaaagaaccgac--agcttttagatctagtaagtgtggtttataaaggtgcaaaacacaaggtcaatCAATCCTATATG
i nomLeu3.chrX                 C 0 I 436
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e otoGar3.GL873584                 71900  67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=182839.000000
s hg38.chrX_KI270880v1_alt         19916 348 +    284869 ctaccaacgaacaactggaaacgggaaccttaaaagcaccgctgacaacaggaaaacatcaggaaacactcagaagtctcacaacattcgcatcaagcgtacacggaaagctacaaaaATCCTGCCGAGAGACACGGACGGCGCCCATGGACTGGGCCTCCTGCGGTTATGAAGGCGGCAGCTGGGCCCACAGGGATCCATTCACTCAGCGAGATCTCACTCAAAAGTTCAGAttgtttgtttttgtttt------ggaaatggagttttgctctcgttgcccgggctggagtgcagtggcgcgatcttggctcactgcaacctgcacctcccgagtAGCTGGGATTACAGACG
s panTro5.chrX                    126581 354 + 155549662 ctaccaacaaacaactggaaacgggaaccttaaaagcaccgttgacgacaggaaaacgtcaggaaacactcagaagtctcacaacattctcatcaagcgtacacggaaagctacaaaaATCCTGCCGAGAGACACGGACGGCGCCCGTGGACTGGGCCTCCCGCGGCTATGAAGACGGCAGCTGGGCCCACAGGGATCCATTCACTGGGCGAGATCTCACTCAAACGTTCAGAttttttgtttttgtttttgttttggaaatggagtttcgctctcattgcccaggctggagtgcactggcgcgatcttggctcactgcaacctccacctcccgagtAGCTGGGATTACAGACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     54844 354 +    105888 ctaccaacaaacaactggaaacgggaaccttaaaagcaccgttgacgacaggaaaacgtcaggaaacactcagaagtctcacaacattcgcatcaagcctacacggaaagctacaaaaatcctgccgagagaCACGGACGGCGCCCGTGGACTGGGCCTCCCGCGGCTATGAAGACGGCAGCTGGGCCCACAGGGATCCATTCACTGGGCGAGATCTCACTCAAACGTTCAGAttttttgtttttgtttttgttttggaaatggagtttcgctctcattgcccaggctggagtgcagtggcgcgttcttggctcactgcaacctccacctcccgagtAGCTGGGATTACAGACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           89907 352 +    417917 ctagcaacaaacaactggaaacgggaaccttaaaagcaccgttgacgacaggaaaacgtcaggaaacactcagaagtctcagaacattcgcatcaagtgtacacggaaagctacaaaaATCCTGCC--GAGACACGGACGGTGCCCGTGGACTGGGCCTCCCGCGGCTATGAAGACGGCAGCTGGGCCCACAGGGATCCATTCACTCAGCAAGATCTCACTCAAAAGTTCAGACTTTttgtttttgtctttgttttggaaatggagtttcgctctcgttgcccaggctggagtgcagtggcgcgatcctggctcacggcaacctccacctcccgagtagctgggattacaggcg
i gorGor5.CYUI01015925v1       C 0 I 161
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 71900  67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=8676.000000
s hg38.chrX_KI270880v1_alt         20264 15 +    284869 TGTGCCACCATCCCT
s panTro5.chrX                    126935 15 + 155549662 TGTGCCACCATCCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     55198 15 +    105888 TGTGCCACCATCCCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           90420 15 +    417917 tgtgccaccatccct
i gorGor5.CYUI01015925v1       I 161 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e saiBol1.JH378345                106029 1585 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 71900 67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=277924.000000
s hg38.chrX_KI270880v1_alt         20279 436 +    284869 GGCtttttttttttg-----gagacggagtctcgctctgtcacccaggctggagtgtggtggcgcgatctcggctcactgcaagctccgcctcccagattcacgccattctcttgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaattttttttttgtttagtagagacggggtttcaccatgttggccaggatggtctcgatctcctgacct--cgtgatccgccctcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggcc-----------------AGAAGGAGCCTATTCTTATGTGTTTTCATACAAAGGCAAAGAAACCAGAATAGCCAACGTAGCGCGGGACAGAAGCAGAACTGAGAAGCTCAGCACGGGATGGCAAAAGTGACCACGTCGCTCCAGCGTGCACCACGGGA
s panTro5.chrX                    126950 430 + 155549662 GGCtttttttttttg------agacggagtctcgctctgtcacccaggctggagtgtggtggcgcgatctcggctcactgcaagctccacctcccagattcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcctggctaattttttttt-gtttagtagagacggggtttcaccatgttggccaggatggtctcgatctcctgacct--cgtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgaggcaccgcgcccggcc-----------------AGAAGGAGCTTATTCTTATGTGTTTTCA----AAGGCAAAGAAACCAGAATAGCCAACGTAGCACGGGACAGAAGCAGAACTGAGAAGCTCAGCACAGGATGGCAAAAGTGACCACATCGCTCCAGCGTGCACCACGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     55213 428 +    105888 GGCttttttttgt--------agacggagtctcgctctgtcacccaggctggagtgtggtggcgcgatctcggctcactgcaagctccgcctcccagattcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcctggctaattttttttt-gtttagtagagatggggtttcaccatgttggccaggatggtctcgatctcctgacct--cgtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgaggcaccacgcccggcc-----------------AGAAGGAGCTTATTCTTATGTGTTTTCA----AAGGCAAAGAAACCAGAATAGCCAACGTAGCGCGGGACAGAAGCAGAACTGAGAAGCTCAGCACAGGATGGCAAAAGTGACCACATCGCTCCAGCGTGCACCACGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           90435 440 +    417917 ggctttttttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggtgcggtctcagctcactgcaagctccgcctcccggg-tcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgccctccaccacgcccggctaattttttgtatttttagtagagaaggggtttcaccacgttagccaggatggtctcgatctcctgacct--cgtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggcc-----------------TGAAAGAGCTTATTCTCATGTGTTTTCATACAAAGGCAAAGAAACcagaatagccaacatagcacgggacagaagcagcactgagcagctcagcacagGATGGCAAAAGTGACCACATCGCTCCAGCGTGCACCCCGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                107614 400 +    465904 GGAtctttttttttgctgttcagaaggggtctcgctctgtcgcccaggctggagtggggtggcctgatcttgggtcactgacacctccgcctcccgggcgcaaacggtcttcgcggcacatttt--------aataaaac---------------------------------------gtttggcagagacggggtttccccacgttggccaggctgccctcaaaccccggacctgaagccatccagccacctcggcctccggaagtgccgggattgcaggcgtgggccacggcgcccggccTCGGCAGAACGTTTTCTAGAAGCAGCTTATTTTCAGGTA----------AAGGCAAAGACACCTGAACAGCCAGCACGG-GCGGAACGGAA-CAGGACGCAGGACCTCCGCACACGACGGCGACAGTGGCCACGTCGCTCCAGCGCGTGCCCCTGG-
i saiBol1.JH378345             I 1585 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 71900  67 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=93721.000000
s hg38.chrX_KI270880v1_alt         20715 156 +    284869 GGCCGGTGGGGGCCACAGT--CCACGTGGTCCCGGGACCAGCACTCACCAC-CACGTCAGAGTCCAACACACGTTCCCACAGGACGGCAGAG-CAAGGACGGGCTGAGTCTAAGATTCACACACAGGCAGCCCAA--CACCAGAATGGCCCCGACAGTTCCA
s panTro5.chrX                    127380 156 + 155549662 GGCCGGTGGGGGCCACAGT--CCACGTGGTCACGGGACCAGCGCTCGCCAC-CACGTCAGAGTCCAACACACGTTCCCACAGGACGGCACAG-CAAGGACGGGCTGAGTCTAAGATTCACACACAGGCAGCCCAA--CACCAGAATGGCCCCGACAGTTCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     55641 156 +    105888 GGCCGGTGGGGGCCACAGT--CCACGTGGTCACCGGACCAGCGCTCGCCAC-CACGTCAGAGTCCAACACACGTTCCCACAGGACGGCACAG-CAAGGACGGGCTGAGTCTAAGATTCACACACAGGCAGCCCAA--CACCAGAATGGCCCCGACAGTTCCA
i panPan2.chrUn_NW_014024225v1 C 0 I 2854
s gorGor5.CYUI01015925v1           90875 152 +    417917 GGCCGGT-GGGGCCACAGT--CCACGTGGTCTCGGGACCCGCGCT---CAC-CACGTCAGAGTCCAACACATGTTCCCACGGGACGGCAGAG-CAAGGACGGGCTGAGTCTAAGATTCACACACAGGCAGCCCAA--CACCAGAATGGCCCCGACAGTTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                108014 111 +    465904 GGCTGCTGAGGGGCAGACT------AGGGTCAGCGG--CAGCGCTCCCCACGCGCGCCAGAGTCCGACGCGGG---------------------GAGGACGGGCTGAGTCCAAAGTT----------------------CTACAACGGCCCCCACCGTCCCG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 71967 157 +  11138919 GACCAGTGGCCCAGACAGTACCCACCTGATCCCAGTGGCAGGGATCACCAC-CTGCTCTGTGGTTGATGCTTGTCCCCACAGGATTATGGAGACAGCAATGTGCTGAGTCTA----TAACACACAGGATGACAAAGCAGCCTGAGGGGCCCAGACAGCTTTG
i otoGar3.GL873584             I 67 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=358549.000000
s hg38.chrX_KI270880v1_alt         20871 566 +    284869 CACGGCGCCCAAGTCGGAGGCTTCT----------------------------CACCACAGCCAGCTCTGCCGCGGGAACGGACAGACGCGTGCAGCAGTGGGACGGAGGAAGGTTCCGGAACGGAGCCCGCACACGGC------ACAGTCACGACGCCGAGGCAACGCTGCGGC-CTGCAAAGCTGATGCTGGGACAGTCggacacccggacacccacgtaccacaaggggaacctcaatccgagcttcacaccccacagggaaggttactcaagaggaccccagacc-------aaaacacaaaaca---tcgcagagg-aaaatcttcgtggctttggattcagaaatga--attcttagatatgacaccagaaacaccgctgtaaaaata---accagtcagtgtctcctcctccaaattcag-aacatctctgagacaccacgtgaagagggggtgaaaacatacgtcacaaactgggaaaaaggcgaacacgtcgcaaa------taaagggtttgtatgctgaagacacgaagaaccctcacGCTCCGTGAGAAAGCAACCAGCCCAG-------GGCCTCTCAGGGCCTCCAAGGCTGGAAGG-----------CCGAAGC--------------GGAGGCTGGAATG-----
s panTro5.chrX                    127536 566 + 155549662 CACAGCGTCCAAGTCGGAGGCTTCT----------------------------CACCGCAGCCAGCTCTGCCGCGGGAACGGACAGACGCGTGCAGCAGTGGGACGGAGAAAGGTTCCGGAACGGAGCCCGCACACGGC------ACAGTCACGACGCCGAGGCAACGCTGCGGC-CTGCAAAGCTGATGCTGGGACAGTCGGACACCCGGACACCCACATACCACAAGGGGAACCTCAATCCGAGCTTCACACCCCACAGGGAAGGTTACTCAAGCGGACCTCAGACC-------AAAACGCaaaaca---tcgcagagg-aaaatctttgtggctttggattcagaaatga--attcttagatatgacaccagaaacactgctgtaaaaata---accagtcagtgtctcctcctccaaattcag-aacatctctgaaacaccacgtgaagagggggtgaaaacacacgtcacaaactgggaaaaaggcgaacacgtcgcaaa------taaagggtttgtatcctgaagacacaaagaaccctcacgctccgtgacaaaGCAACCAGCCCAG-------GGCCTCTCGGAGCCTCCGAGGCTGGAAGG-----------CCGAAGC--------------GGGGGCTGGAATG-----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     58651 566 +    105888 CACGGCGCCCAAGTCGGAGGCTTCT----------------------------CACCGCAGCCAGCTCTGCCTCGGGAACAGACAGACGCGTGCAGCAGTGGGACGGAGGAAGGTTCCGGAACAGAGCCCGCACACGGC------ACAGTCACGACGTCGAGGCAACGCTGCGGC-CTGCAAAGCTGGTGTTGGGACAGTCGGACACCCggacacccacataccacaaggggaacctcaatccgagcttcacaccccacagggaaggttactcaagcggaccccagacc-------aaaacgcaaaaca---tcgcagagg-aaaatctttgtggctttggattcaggaatga--attcttagatatgacaccaaaaacaccgctgtaaaaata---accagtcagtgtctcctcctccaaattcag-aacatctctgagacaccacgtgaagagggggtgaaaacatacgtcacaaactaggaaaaaggcgaacacgtcgcaaa------taaagggtttgtatcctgaagacacgaagaaccctcacactccatgagaaaGCAACCAGCCCAT-------GGCCTCTCAGGGCCTCCGAGGTTGGAAGG-----------CCGAAGT--------------GGGGGCTGGAATG-----
i panPan2.chrUn_NW_014024225v1 I 2854 C 0
s gorGor5.CYUI01015925v1           91027 557 +    417917 CACGGTGCCCGAGTCGGAGGCTTCT----------------------------CACCACAGTCAGCTCTGCCGCGGGAACGGACAGACGCGTGCAGCAGTGGGACGGAGGAAGGCTCCGGAACGCAGCCTGCACACGGC------ACAGTCACAATGCCGAGGCAACGCTGCAGC-CTGCAAAGCtggtgctagggcagt--------cagacacccacataccacaaggggaacctcaatccgagcttcacaccccacagggaaggttactcaagcggaccccagacc-------aaaacgcaaaaca---tcgcagaggaaaaatctttgtggctttggattcaggaacga--attcttagatatgacaccaaaaacaccgctgtaaaaata---accagtcagtgtctcctcctccaaattgag-aacatctccgagacaccatgtgaagagggagtgaaaacatacgtcacaaactgggaaaaaggcgaacacgtcgcaaa------cgaagggtttgtatcctgaagacacgaagaaccctcacgctctgtgagaaaacaaccagcccaT-------GGCCTCTCGGGGCCTCCAAGGCTG--AGG-----------CCGAAGT--------------GGGGGCTGGAATG-----
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                108125 571 +    465904 CGTGGCACCGGAGTGACAGGCTTCT----------------------------CCGCGCA----------------GGAAGGACAGACGCCTGCAGTCGCGGCACAGAGACGGGTTCAGGAACGGA--CCGCACACAGCGTGGCTGCCGCCACCTCGCCCGGGCCACCCCGTGGCTTTGCGGAGGCGGTGCTGGGACAGCCGGACACCCCGAGG----------ACAAGGGGAGCGTCCACCCGACCTTCACCCCCCA-GGGAACGGCTACGCACGTGGACCCTAGACCCGAGTCTAAACAGCAAAACG---T-GCAGGTG--AAATGTCCGC-GTTTAGGGTTCGGGCGTGA--GTTCTTAG--GCGGCACCAGACACCCGGCCGTGAAGTCACACGCCAGGCAGTGCCACTCCCTGCAAACTCGG-AGCACCGCGCGGCCACCACGTGA--CGGCGGTGACCACACACCTCGGACGCTGCGGAAAACGCGAACGGGTCACAGG------CGAAGGGTCTGTGTCCCGAGGACCTGAGGCGGCCTTCGGCCCAGGGAGGAAGCAGGCGGCCGGG------CGGCCTCCGGGGGCCTCCAGGGCTGGCAGGGGACAGGGGCCCCGGCGTGGCCTACGTcccggggaggcgggcg-------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 72124 576 +  11138919 -CTGGCAAAGACGCTGGAGGCTCCTGGCACGTGACGCCAGGGCTCATGAATAAAGCCACAGACCACAACACCAC----ACAGTCAGACGTGGATATCAGTAGGACAGAGTGAAATTCAGGA--GGAACACACACACAAA---TATACACTCACA-----CGGGCAATA--ACTGT-CTATAAAGATGCCATGAATTTCGtaggatggctgagtgtcggcatgccaagaagtgagcacacatcc--------cgccccacaggga--gtggttcagatgggccacagacc-------tgaatgtggaacaaactcacaaagg-aga--ccttgtggctgtgggtttggcaactatttttcctaactctgaca-cgaaagcacagcctagaaaacagcaactggtgagtgacacttcatcaaaatgaagaaatgtctctgagagac------acaaggagactgagggatctgccaccaactggg---agTGCGAGCGAGTTGCACAGCTGCCCTAGGAGCTTAAGCGCAGGAGAGA----------TTAGACACAATGAGAAA-CACCCAGGACAGCTTCTGCGGTCTCATGCAGTCTCAGAGGCCA-CATG-----------CTGAAGT--------------AGGGCCTGTGACAGAAGA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          170349 2104 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=49338.000000
s hg38.chrX_KI270880v1_alt         21437 42 +    284869 GCCACGGGCCCTGCAGCCTG-------CCCAGCAGGTGCCAGCCGTGGG
s panTro5.chrX                    128102 42 + 155549662 GCCACGGGCCCTGCAGCCTG-------CCCAGCAGGTGCCAGCCGTGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59217 42 +    105888 GCCACGGGCCCTGCAGCCTT-------CCCAGCAGGTGCCAGCCGTGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91584 41 +    417917 GCCATGGGCCCCGCAGCCTG-------CCCGGCAGGTGCCAGCCGT-GG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                108696 42 +    465904 gcccccgacccctcggcccg-------cctggcaggcgccagccgcggg
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          172453 42 -    735872 GCCACCGACCCCGCAGCCCG-------CCCAGCAGATGCCAGCCGTGGG
i cebCap1.NW_016107987v1       I 2104 I 133
s otoGar3.GL873584                 72700 46 +  11138919 --CACCCATTCC-CAACCTTTGTCTGCCCCAACACATGTCAGCCGTGTG
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=68121.000000
s hg38.chrX_KI270880v1_alt         21479  96 +    284869 ATAAGGACAGACG--TCGTTGGCGAAACA-----CGACTCGGCCTCCCCGTGCTGGGCCTGATGTGCGAAGCCTCGCGCCCAGGATCACAGAACCCCACGCGG
s panTro5.chrX                    128144 101 + 155549662 ATAAGGACAGACG--TCGTCGGCAAAACATGTCTCGACTCGGCTTCCCCGTGCTGGGCCTGATGTGCAAAGCCTCACGCCCAGGATCACAGAACCCCACGCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59259 101 +    105888 ATAAGGACAGACG--TCGTTGGCGAAACACGTCTTGACTCGGCCTCCCCGTGCTGGGCCTGATGTGCGAAGCCTCGCGCCCAGAATCACAGAACCCCATGTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91625 101 +    417917 ATAAGGACAGATG--TCGTTGGGGAAACACGTCTCGACTCGGCCTCCCCGTGCTGGGCCTGATGTGCGAAGCCTCACGCCCAGGATCACAGAACCCCACGTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                108738 101 +    465904 ccgggAACAGACGCACAGAGGGGGAAACGCGTCTTCACTCGGCCTCCCCGTTCTTCGCCTGGTACGTGAAGTCTGAGAAACGGGGT--CAGAACCCCACGCGG
i saiBol1.JH378345             C 0 I 875
s otoGar3.GL873584                 72746  95 +  11138919 CCGTGGACACTGC--TTGCTCAC-AAACATAGC-TGCCTCTATCTCCC----CTTTGCCAGCTGTGTGAAAACTCACCCTCAGAATCACCAAATGCCATGAAG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          172495 133 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=2177.000000
s hg38.chrX_KI270880v1_alt         21575 7 +    284869 GGAATGA-
s panTro5.chrX                    128245 7 + 155549662 GGAATGA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59360 7 +    105888 GGGACAA-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91726 7 +    417917 GGGACAA-
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                 72841 7 +  11138919 -GGACAAA
i otoGar3.GL873584             C 0 I 77
e cebCap1.NW_016107987v1          172495 133 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=44290.000000
s hg38.chrX_KI270880v1_alt         21582  92 +    284869 CGGGC------------------------------------------------------AGACTGCACCGAGGCCCGGCCCTGTCATCGGCTGTCCTTACCTCACCGGCCCCGTGTCAGGTCTCACCCCGCCCCTCTGTGTCCGCG
s panTro5.chrX                    128252  92 + 155549662 CGGGC------------------------------------------------------AGACTGCACCGAGGCCCGGCCCTGTCATCGGCTGTCCTTACCTCACCGGCCCCGTGTCAGGTCTCACCCCGCCCCTCTGTGTCCGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59367 142 +    105888 CGGGCGGGGGGCTCCCGGGTCCCGCCACTGAGCTGCGGTAAAC--GGGGTGCCGCAGGGAGACTGCACCGAGGCCCGGCCCCGTCGTCGGCTGTCCTTACCTCACCGGCCCCGTGTCAGGTCTCACCC--CCTCGCCGTGTCCGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91733 146 +    417917 CGGGCGGGGGGCTCCCGGGTCCCGCCACTGAGCTGCGGTAAACAGGGGGTGCCGCAGGGAGACTGCACCGAGGCCCGGCCCTGTCATCGGCTGTCCTTACCTCACCGGCCCCGTGTCAGGTCTCACCCCGCCCCTCCATGTCCGCA
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          172495 133 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 72848  77 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171   0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=476.000000
s hg38.chrX_KI270880v1_alt         21674 1 +    284869 C
s panTro5.chrX                    128344 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59509 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91879 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
s cebCap1.NW_016107987v1          172628 1 -    735872 C
i cebCap1.NW_016107987v1       I 133 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 72848 77 +  11138919 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=25402.000000
s hg38.chrX_KI270880v1_alt         21675 29 +    284869 ACCCCACCTGACTGACCCCGCATCCCCCG
s panTro5.chrX                    128345 29 + 155549662 ACCCCACCTGACTGGCCCCGCATCCCCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59510 29 +    105888 ACCCCACCTGACTGGCCCCACATTCCCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91880 28 +    417917 GCCCCACCTCACTG-CCCCGCATTCCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s cebCap1.NW_016107987v1          172629 29 -    735872 ACCCCTCCTCACTGACCCCGCATCCCCCG
i cebCap1.NW_016107987v1       C 0 I 262
s otoGar3.GL873584                 72925 27 +  11138919 GCCCCTCCTGGCTGTCCCCATGTTCCT--
i otoGar3.GL873584             I 77 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=19079.000000
s hg38.chrX_KI270880v1_alt         21704 35 +    284869 GCTGCACACACACCCGTCCTCC-CACTCACCCGTCC
s panTro5.chrX                    128374 36 + 155549662 GCTGCACACTCACCCGTCCCCCACACTCACCCGTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     59539 35 +    105888 GCTGCACACACACCCGTCCCCC-CACTCACCCATTC
i panPan2.chrUn_NW_014024225v1 C 0 T 3687
s gorGor5.CYUI01015925v1           91908 35 +    417917 GCTGCAcacacacccgtccccc-cactcacccgtcc
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                 72952 29 +  11138919 GCCCCACACATCCCCATGTTCC-TGCCCAC------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          172658 262 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=4708.000000
s hg38.chrX_KI270880v1_alt         21739 33 +    284869 TCCCCACTCACCCGTCCTCC--CACTGACCCGTCC
s panTro5.chrX                    128410 34 + 155549662 CCCACACTCACCCGTCCCCC-ACACTCACCCGTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     55887 35 +    105888 TCCACACTCACCCGTCCCCCCACACTCACCCGTCC
i panPan2.chrUn_NW_014024225v1 T 3687 I 3652
s otoGar3.GL873584                 72981  4 +  11138919 -------------------------------GTCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          172658 262 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I
e gorGor5.CYUI01015925v1           91943  0 +    417917 C

a score=1634.000000
s hg38.chrX_KI270880v1_alt         21772 16 +    284869 CCC-CACTCACCCGTCC
s panTro5.chrX                    128444 17 + 155549662 CCCACACTCACCCGTCC
i panTro5.chrX                 C 0 I 31669
s panPan2.chrUn_NW_014024225v1     59574 16 +    105888 CCC-CACTCACCCGTCC
i panPan2.chrUn_NW_014024225v1 I 3652 C 0
s otoGar3.GL873584                 72985  8 +  11138919 -------CCACATGC--
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          172658 262 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171  0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I
e gorGor5.CYUI01015925v1           91943  0 +    417917 C

a score=-672.000000
s hg38.chrX_KI270880v1_alt         21788 4 +    284869 TCCC
s panPan2.chrUn_NW_014024225v1     59590 4 +    105888 TCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91943 3 +    417917 -ccc
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                 72993 2 +  11138919 TG--
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          172658 262 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I
e macFas5.chr7                 171673131 1273 - 171882078 I

a score=1605.000000
s hg38.chrX_KI270880v1_alt         21792 2 +    284869 CA
s panPan2.chrUn_NW_014024225v1     59594 1 +    105888 -A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91946 2 +    417917 ca
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171674404 2 - 171882078 cg
i macFas5.chr7                 I 1273 C 0
s cebCap1.NW_016107987v1          172920 2 -    735872 CA
i cebCap1.NW_016107987v1       I 262 C 0
s otoGar3.GL873584                 72995 2 +  11138919 CA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           92269 1373 -   1025902 I
e colAng1.NW_012115411v1         1081171 0 -   1230721 I
e rheMac8.chrX                     83386 1978 + 149150640 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=56732.000000
s hg38.chrX_KI270880v1_alt         21794 17 +    284869 CTCACCCGTCCTCCCAG
s panPan2.chrUn_NW_014024225v1     59595 17 +    105888 CTCACCCGTCCTCCCAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91948 17 +    417917 ctcacccgtcctcccaG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85364 17 + 149150640 CTCACCCGTCCTCCCAG
i rheMac8.chrX                 I 1978 C 0
s macFas5.chr7                 171674406 17 - 171882078 ctcacccgtcctcccag
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           93642 17 -   1025902 CTCACCCGTCCTCCCAG
i cerAty1.NW_012001098v1       I 1373 C 0
s colAng1.NW_012115411v1          151384 17 +   1230721 CTCACCCGTCCTCCCAG
i colAng1.NW_012115411v1       I 2227 C 0
s cebCap1.NW_016107987v1          172922 17 -    735872 CTCACCCGTCCTCCCAG
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 72997 17 +  11138919 CTCACCCATCCTCCCAC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e macNem1.NW_012017243v1          128502 1746 +  25972781 I

a score=273136.000000
s hg38.chrX_KI270880v1_alt         21811 73 +    284869 GGCTCTCCCGCAGTCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCGTACTT-CTCCCAGTCCGAGAGCT
s panPan2.chrUn_NW_014024225v1     59612 73 +    105888 CGCTCTCCCGTGGTCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCGTACTT-CTCCCAGTCTGAGAGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           91965 73 +    417917 GGCTCTCCCGTGGTCTCCTCGGCCACCAGGATGT-CATACTCCTCGGCCGCGTACTT-CTCCCAGTCCGAGAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85381 73 + 149150640 GGCTCCCCCGCCGTCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCGTACTT-CTCCCAGTCCGAGAGCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171674423 73 - 171882078 ggctcccccgccGTCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCGTACTT-CTCCCAGTCCGAGAGCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130248 74 +  25972781 GGCTCCCCCGCCGTCTCCTCCGCCACCAGGATGTCCGTACTCCTC-GCCGCGTACTTGCTCCCAGTCCGAGAGCT
i macNem1.NW_012017243v1       I 1746 I 80
s cerAty1.NW_012001098v1           93659 73 -   1025902 GGCTCCCCCGCCGTCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCGTACTT-CTCCCAGTCCGAGAGCT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          151401 73 +   1230721 GGCTCCCCCGCTGTCTCCTCAGCCACCAGGATGT-CGTACTCCTCCGCCGCGTACTT-CTCCCAGTCCGAGAGCT
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          172939 73 -    735872 GGCTCTCCCGCAGCCTCCTCGGCCACCAGGATGT-CGTACTCCTCGGCCGCATACTT-CTCCCAGTCCGAGAGTT
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 73014 73 +  11138919 GGCTCCCCTGCAGCCTCCTCGGCCACCAGGATGT-CGTACTCCTCAGCAGCATACTT-CTCCCAGTCTGACAGCT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I

a score=93691.000000
s hg38.chrX_KI270880v1_alt         21884 33 +    284869 CGGGGCCGCCGCTGTCACCGTCCTGGAGGAAGC
s panPan2.chrUn_NW_014024225v1     59685 33 +    105888 CGGGGCCGCCGCTGTCACCGTCCTGGAGGAAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92038 33 +    417917 CGGGGCCGCCACTGTCACCGTCCTGGAGGAAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85454 33 + 149150640 CGGGGCCGCTGCCGTCACTGTCCTGGGGGAAGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171674496 33 - 171882078 CGGGGCCGCTGCCGTCACTGTCCTGGGGGAAGC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           93732 33 -   1025902 CGGGGCCGCTGCCGTCACTGTCCTGGGGGAAGC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          151474 33 +   1230721 CGGGGCCGCTGCTGTCACTGTCCTGGGGGAAGC
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          173012 33 -    735872 CGGAGCTGCTGCTGTCACTGTCCTGGAGGAAGC
i cebCap1.NW_016107987v1       C 0 I 2208
s otoGar3.GL873584                 73087 33 +  11138919 CTGGGCCATCGCAGTCACTCTCCTGGAGGACAC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e macNem1.NW_012017243v1          130322 80 +  25972781 I

a score=48584.000000
s hg38.chrX_KI270880v1_alt         21917 47 +    284869 ACACG------GGTTACGT------ACACGGCGTGGCGCGGCCCGGCCCGCGTGCCCGC----
s panPan2.chrUn_NW_014024225v1     59718 47 +    105888 ACACG------GGTTACGT------ACACGGCGTGGCGCGGCCCGGCCCGCGTGCCCGC----
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92071 47 +    417917 ACAAG------GGTTATGT------ACACGGCGTGGCTCGGCCCAGCCCGCGTGCCCGC----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85487 51 + 149150640 GCACGCGTCA-CGTCACGC------ACCC-GCCTGGCGCGGCCCCGCCCGCGCGCCCCC----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171674529 51 - 171882078 GCACGCGTCA-CGTCACGC------ACCC-GCCTGGCGCGGCCCCGCCCGCGCGCCCCC----
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           93765 46 -   1025902 GCACG------CGTCACGC------ACCC-GCCTGGCGCGGCCCCGCCCGCGCGCCCCC----
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          151507 46 +   1230721 GCATG------CGTCACAC------CCCCGGCCCGGGGCGGCCCCGCCCGCGCACCCC-----
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 73120 57 +  11138919 -----ATTCACTGTTATGTGGCATGGCCC-AGGTGGTGTGGCCCTGGCAGCCTGCACTCCCAG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e macNem1.NW_012017243v1          130322 80 +  25972781 I

a score=849501.000000
s hg38.chrX_KI270880v1_alt         21964 377 +    284869 CGCACTCACCCTGAGCAGGGAGATCTGCTCTTTCTGCTCGTGGTCGAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAAGACGTTAGCCAGCTTGCAGCGCTTCAGGTCCTGCAGCGTGATCTTCCCTGC-----GGGGAGGGGAG----TGCGTCCAAGG-------CGCGTGAGCCCGGTCTCACCTTCGGGGCCTGG-----GTGTGGG-------GTGCGCGCGTCCTGTCACACGTGCTTAAGGACGCGGCACGAAGCTCCGGGCTCTCACGCCACGTGTTTGACGTGAAAGGCGGACACGCGAGTGTCCTGGTTCTGGGTGGGGACTGAGGCGTGGGAGGCCGTGATGCGGAGGCGACTA--GGGGCCACCGGTGCCCCAA-GGATGCG--TGGACTGGGAC
s panPan2.chrUn_NW_014024225v1     59765 377 +    105888 CGCACTCACCCTGAGCAGGGAGATCTGCTCTTTCTGCTCGTGGTCGAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAAGACGTTGGCCAGCTTGCAGCGCTTCAGGTCCTGCAGCGTGATCTTCCCTGC-----GGGGAGGGGAG----TGCGTCCAAGG-------CGCGTGAGCCCGGTCTCACCTTCGGGGCTTGG-----GTGTGGG-------GTGCGTGCATCCTGTCACACGTGCTTAAGGACGCGGCACGAAGCTCCGGGCTCTCACGTCACGTGTTTGACGTGAAAGGCGGACACGCGAGTGTCCTGGTTCTGGGTGGGGACTGAGGCGTGGGAGGCCGTGATGCGGAGGCGGCTA--GGGGCCACCGGTGCCCCAA-GGACGCG--TGGACTGGGAC
i panPan2.chrUn_NW_014024225v1 C 0 I 1
s gorGor5.CYUI01015925v1           92118 379 +    417917 CGCACTCACCCTGAGCAGGGAAATCTGCTCTTTCTGCTCGTGGTCGAGGTACTTCTCGATGTTGAAGAAAGGTGTCGAAGAAGACGTTGGCCAGCTTGCAGCGCTTCAGGTCCTGCAGCGTGATCTTCCCTGC-----GGGGAGGGGAG----TGCGTCCAAGG-------CGCGTGAGCCCGGCCTCACCTTCGGGGCCTGG-----GTGTGGG-------GTGCGTGCGTCCTGTCACACGTGCTTAAGGACGCGGCACGAAGCTCCGGGATCTCACGCCACGTGTTTGACGTGAAAGGCGGACACGCGACTGTCCCGGTTCTGGGTGGGGACTGAGGCGTGGGAGGCCGTGACGCGGAGGTGGCTA--GGGGCCACCAGTGCCCCAAGGGACGCG--TGGACTGGGAC
i gorGor5.CYUI01015925v1       C 0 I 1
s rheMac8.chrX                     85538 372 + 149150640 CGCACTCACCCTGAGCAGCGAGATCTGCTCCTTCTGCTCGTGGTCCAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAACACGCCGGCCAGCTTGCAGCGCTTCAGGTCCCGCAGCGTGATCCTCCCTGC-----GGGGAGGGGA-----CGTGTCCCAG---------GCGTGAGCCCGGCCTCACCTTCGGG--CCGG-----CTGTGGGCTGTGCGGCGCGCGCCTCGGGTCACACGCGCGTAAGGACGCGGCCCGAGGCTCCGGGCTCTCCCGCCACGGGTCGGACGGGACAGGCGGACACGCG-----CGTGGTTCTGGGCGGGGACTGAGGTGT-GGAGGCCGCGGTGCGGAGACGGCTC---GGGCCACCTGTGCCCCGA-GGACGCA--GGGACGGGGAC
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171674580 372 - 171882078 CGCACTCACCCTGAGCAGCGAGATCTGCTCCTTCTGCTCGTGGTCCAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAACACGCCGGCCAGCTTGCAGCGCTTCAGGTCCCGCAGCGTGATCCTCCCTGC-----GGGGAGGGGA-----CGTGTCCCAG---------GCGTGAGCCCGGCCTCACCTTCGGG--CCGG-----CTGTGGGCTGTGCGGCGCGCGCCTCGGGTCACACGCGCGTAAGGACGCGGCCCGAGGCTCCGGGCTCTCCCGCCACGGGTCTGACGGGACAGGCGGACACGCG-----CGTGGTTCTGGGCGGGGACTGAGGTGT-GGAGGCCGCGGTGCGGAGGCGGCTC---GGGCCACCTGTGCCCCGA-GGACGCA--GGGACGGGGAC
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          130402 372 +  25972781 CGCACTCACCCTGAGCAGCGAGATCTGCTCCTTCTGCTCGTGGTCCAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAACACGCCGGCCAGCTTGCAGCGCTTCAGGTCCCGCAGCGTGATCCTCCCTGC-----GGGGAGGGGA-----CGTGTCCCAG---------GCGTGAGCCCGGCCTCACCTTCGGG--CCGG-----CTGTGGGCTGTGCGGCGCGCGCCTCGGGTCACACGCGCGTAAGGACGCGGCCCGAGGCTCCGGGCTCTCCCGCCACGGGTGTGACGGGACAGGCGGACACGCG-----CGTGGTTCTGGGCGGGGACTGAGGTGT-GGAGGCCGCGGTGCGGAGGCGGCTC---GGGCCACCTGTGCCCCGA-GGACGCA--GGGACGGGGAC
i macNem1.NW_012017243v1       I 80 I 27
s cerAty1.NW_012001098v1           93811 376 -   1025902 CGCACTCACCCTGAGCAGCGAGATCTGCTCCTTCTGCTCGTGGTCCAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAACACGCCGGCCAGCTTGCAGCGCTTCAGGTCCTGCAGCGTGATCCTCCCT-------GGGGAGGGGA-----CGTGTCCCAG---------GCGTGAGCCCGGCCCCACCTTCGGC--GGGGAAGACCTGTGGGCTGTGCGGCGCGCGCCTCGGGTCACACGCGCTTAAGGACGCGGCCCGGGGCTCCGGGCTCTCCCGCCACGGGTCTGACGGGACAGGCGGACACACG-----CGTGGTTCTGGGCGGGGACTGAGGTGT-GGAGGCCGCGGTGCGGAGGCGGCTC--GGGGCCACCTGTGCCCCGA-GGACGCA--GGGACTGGGAC
i cerAty1.NW_012001098v1       C 0 I 15
s colAng1.NW_012115411v1          151553 367 +   1230721 CGCACTCACCCTGAGCAGGGCGATCTGCTCTTTCTGCTCGTGGTCCAGGTACTTCTCGATGTTGAAG-AAGGTGTCGAAGAAGACGCTGGCCAGCTTGCAGCGCTTCAGGTCCTGCAGCGTGATCTTCCCTGC-----GGGGACGGGA-----CGTGTCCAAG---------GTGTGAGCCCGGCCTCACCTTCGGG-CCCGG-----GTGTGGGCT-----GCCTGCGTC---GGTCACACGCGCTTAAGGACGCGGCCCGAGGCTCCGGGCTCTCCCGCCACGGGCCTGATGGGACAGGCGGACACACG-----CGTGCATCTGGGTGGGGACTGAGGTGTGGGAGGCCGTGGTGCGGAGGCGGCTT--AGGGCCACCTGTGCCCCAG-GGGCGCA--GGGACTGGGAC
i colAng1.NW_012115411v1       C 0 I 15
s otoGar3.GL873584                 73177 346 +  11138919 TGCACTCACCCTGAGCAGGGAGCCCTGCTCTCTCTGCTCGTGATCCAGGTACTTCTCAACATTGAAG-AAGGTGTCAAAGAAGACGTGGGCGAGCCTACAGCGCTTCAGGTCGCTCAGTGTGATCTTCCCTGCAGGCGGGAGAGGGGATTGTCTGTGTCAGAGGGGGTGACCGTGAGAGTCTG----CCCCCTAGGA--GCTG-----CTATGGG------------------TGGTGGCAGTTGATGAAGGAAGCAGCAGGATGCTGTGTGCTC-CACACCGCCAGACTCATACG--TAGAGGACACACG------------------------------ATAAGAGGCACCCTTG-GGAGGCATCGCATGGAGGAACCTGGGGCTGAG-GGGCATAAGTGAGCCAGGAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I

a score=-1175.000000
s hg38.chrX_KI270880v1_alt         22341 23 +    284869 TAGCGCAGGGAGGCGC-GGCCAGC
s panPan2.chrUn_NW_014024225v1     60143 23 +    105888 TGGCACAGGGAGGCGC-GGCCAAC
i panPan2.chrUn_NW_014024225v1 I 1 C 0
s gorGor5.CYUI01015925v1           92498 23 +    417917 TGGAGCTGGGAGGCGC-GGCCAGC
i gorGor5.CYUI01015925v1       I 1 C 0
s rheMac8.chrX                     85911  7 + 149150640 TGGTGCA-----------------
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171674953  7 - 171882078 TGGTGCA-----------------
i macFas5.chr7                 I 1 C 0
s otoGar3.GL873584                 73523 21 +  11138919 ---TGGACGGTGCCGCAGGCCACC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94187 15 -   1025902 I
e colAng1.NW_012115411v1          151920 15 +   1230721 I
e macNem1.NW_012017243v1          130774 27 +  25972781 I

a score=2060.000000
s hg38.chrX_KI270880v1_alt         22364 3 +    284869 AGG
s panPan2.chrUn_NW_014024225v1     60166 3 +    105888 AGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92521 3 +    417917 AGG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          151935 2 +   1230721 -GG
i colAng1.NW_012115411v1       I 15 I 1
s otoGar3.GL873584                 73544 3 +  11138919 GGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94187 15 -   1025902 I
e rheMac8.chrX                     85918 0 + 149150640 C
e macNem1.NW_012017243v1          130774 27 +  25972781 I
e macFas5.chr7                 171674960 0 - 171882078 C

a score=13898.000000
s hg38.chrX_KI270880v1_alt         22367 7 +    284869 GGCGCTG
s panPan2.chrUn_NW_014024225v1     60169 7 +    105888 GGCGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92524 7 +    417917 GGCGACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85918 7 + 149150640 GGCGCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171674960 7 - 171882078 GGCGCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130801 7 +  25972781 GGCGCCC
i macNem1.NW_012017243v1       I 27 C 0
s colAng1.NW_012115411v1          151938 7 +   1230721 GGCGCCC
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584                 73547 7 +  11138919 GGCATCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94187 15 -   1025902 I

a score=403596.000000
s hg38.chrX_KI270880v1_alt         22374 177 +    284869 CTGGATCTGAAATTACAGAGAACGGAGCTCCCCGTGCAGGCAGAGGCCAGAGGGTGTCCCGGGGACACTGAGCAGCAGGAGGCGCCCCATGGCC-GGGGGGGGCAGGGCTGCAGGGCGGTGCCCGGGCCTCAGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGATTCTGAGATGCA
s panPan2.chrUn_NW_014024225v1     60176 175 +    105888 CTGGATCTGAAATTACAGAGAACGGAGCTCCCTGTGCAGGCAGAGACCAGAGGGTGTCCTGGGGACACTGAGCAGCAGGA---GCCCCACGGCCAGGGAGGGGCAGGGCTGCAGGGCGGTGCCCGGGCCTCAGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGAAATCTGAAATGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92531 177 +    417917 CTGGATCTGAAATTCCAGAGAACGGAGCTCCCCGTGCAGACAGAGGCCAGAGGGTGTCCCGGGGACACTGAGCAGCAGGAGGAGCCCCACGGCCAGGGAGGGGCAGGGCAGCAGGGCGGTGCCC-GGCTTCAGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGATTCTGAGATGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     85925 175 + 149150640 CTGGATGTGAAATGACAGAGCCCGGAGCTCCCCACGCAGGCCGTGGCCAGAGGGTGTCCCGGGGACACCGAGCACCAGGAGG-GCCCCA--GCCAGGGAGAGGGACGGCTGCAGGGCGGTGCCCGGGCCTCGGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGAGTCTGAGATGCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171674967 175 - 171882078 CTGGATGTGAAATGACAGAGCCCGGAGCTCCCCACGCAGGCCGTGGCCAGAGGGTGTCCCGGGGACACTGAGCACCAGGAGG-GCCCCA--GCCAGGGAGAGGGACGGCTGCAGGGCGGTGCCCGGGCCTCGGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGAGTCTGAGATGCA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130808 175 +  25972781 CTGGATGTGAAATGACAGAGCCCGGAGCTCCCCACGCAGGCCGTGGCCAGAGGGTGTCCCGGGGACACTGAGCACCAGGAGG-GCCCCA--GCCAGGGAGAGGGACGGCTGCAGGGCGGTGCCCGGGCCTCGGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGAGTCTGAGATGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           94202 175 -   1025902 CTGGATCTGAAATGACAGAGCCCGGAGCTCCCCGTGCAGGCCGTGGCCAGAGGGTGCCCCGGGGACACCGAGCACCAGGAGG-GCCCCA--GCCAGGGAGAGGGACGGCTGCAGGGTGGTGCCCGGGCCTCGGAGCCATTTCCGAAGTGAAAGTGCCAGAGCTGCAGTCTGAGATGCA
i cerAty1.NW_012001098v1       I 15 C 0
s colAng1.NW_012115411v1          151945 174 +   1230721 CTGGATCTGAAATGACAGAGCCCGGAGCTCCCCACGCAGGCCGTGGCCAGAGGGTGTCCCCGGGACACTGAGCACCAGGAGG-GCCCCA--GCCAGGGAGAGGGACGGCTGCAGGGTGGTGCCCGGGCCTCAGAGCCATTTCCAAAGTGAAAGTCCCAGAGCTGGAGTCTGAGATG-A
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 73554 151 +  11138919 CTGGACCTGAAACGACAGGGACCTGCTCCCCTC---CAGCCCAGGGCCATGTGCAGCCCAGGGCACAATATGTAGGAGAA---AACTCA--GTTGTGGAGCAAAGGGGC-------CTGTGTCC-----TCAGAA-------CAAGGATAACCCCCCAGACCTGGATTCTAAAACACA
i otoGar3.GL873584             C 0 I 473
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I

a score=27737.000000
s hg38.chrX_KI270880v1_alt         22551 11 +    284869 GAAGGAAGCCA
s panPan2.chrUn_NW_014024225v1     60351 11 +    105888 GAAGGAAGCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92708 11 +    417917 GAAGGAAGCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86100 11 + 149150640 GAAGGAAGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171675142 11 - 171882078 GAAGGAAGCCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130983 11 +  25972781 GAAGGAAGCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           94377 11 -   1025902 GAAGGAAGCCA
i cerAty1.NW_012001098v1       C 0 I 194
s colAng1.NW_012115411v1          152119 11 +   1230721 GAAGGAAGCCA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I

a score=2601.000000
s hg38.chrX_KI270880v1_alt         22562 2 +    284869 GG
s panPan2.chrUn_NW_014024225v1     60362 2 +    105888 GG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92719 2 +    417917 GG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86111 2 + 149150640 AG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171675153 2 - 171882078 AG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130994 2 +  25972781 AG
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          152130 2 +   1230721 GG
i colAng1.NW_012115411v1       C 0 I 146
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I

a score=12374.000000
s hg38.chrX_KI270880v1_alt         22564 11 +    284869 CGGCGTGGACG
s panPan2.chrUn_NW_014024225v1     60364 11 +    105888 CGGCGTGGACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92721 11 +    417917 CGGCGTGGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86113 11 + 149150640 CAGCGTGGACG
i rheMac8.chrX                 C 0 I 215
s macFas5.chr7                 171675155 10 - 171882078 CAGCGTGGAC-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          130996 11 +  25972781 CAGCGTGGACG
i macNem1.NW_012017243v1       C 0 I 159
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152132 146 +   1230721 I

a score=11583.000000
s hg38.chrX_KI270880v1_alt         22575 25 +    284869 GTGGGGCTCCCCTTTGCCTTAGAGG
s panPan2.chrUn_NW_014024225v1     60375 25 +    105888 GTGGGGCTCCCCTTTGCCTTAGAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92732 25 +    417917 GTGGGGCTCCCCTTTGCCTTAGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171675165 20 - 171882078 -----GCTCCCCTTTGCCTCAGTGG
i macFas5.chr7                 C 0 I 263
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152132 146 +   1230721 I
e rheMac8.chrX                     86124 215 + 149150640 I
e macNem1.NW_012017243v1          131007 159 +  25972781 I

a score=9295.000000
s hg38.chrX_KI270880v1_alt         22600 40 +    284869 GCACGGGGGTGGGTGGGAGGAGCTGGGGAGATGGTGTGGG
s panPan2.chrUn_NW_014024225v1     60400 39 +    105888 GCACGGGGGTGGGTGGGAGGAGCTGGGGCGATGGTGC-AG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92757 40 +    417917 GGACGGGGGTGGGTGGGAGGAGCTGGGGCGATGGTGCGGG
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152132 146 +   1230721 I
e rheMac8.chrX                     86124 215 + 149150640 I
e macNem1.NW_012017243v1          131007 159 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I

a score=807.000000
s hg38.chrX_KI270880v1_alt         22640 2 +    284869 GG
s panPan2.chrUn_NW_014024225v1     60439 2 +    105888 AG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92797 2 +    417917 GG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          152278 2 +   1230721 GG
i colAng1.NW_012115411v1       I 146 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e rheMac8.chrX                     86124 215 + 149150640 I
e macNem1.NW_012017243v1          131007 159 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I

a score=3820.000000
s hg38.chrX_KI270880v1_alt         22642 4 +    284869 GAAC
s panPan2.chrUn_NW_014024225v1     60441 4 +    105888 GAAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           92799 4 +    417917 GAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          131166 4 +  25972781 GAAC
i macNem1.NW_012017243v1       I 159 C 0
s colAng1.NW_012115411v1          152280 4 +   1230721 GAAC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e rheMac8.chrX                     86124 215 + 149150640 I
e macFas5.chr7                 171675185 263 - 171882078 I

a score=23149.000000
s hg38.chrX_KI270880v1_alt         22646 26 +    284869 AGGGGTGAGGGGAGGAGCCGGGGGGG
s panPan2.chrUn_NW_014024225v1     60445 26 +    105888 AGGGGTGAGGGGAGGAGCCGGGGGGG
i panPan2.chrUn_NW_014024225v1 C 0 M 1130
s gorGor5.CYUI01015925v1           92803 22 +    417917 --GGGTGA-GGGAGGAGCCGGGGGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86339 23 + 149150640 AGGGGTGAGGGGAGGAGACGGGG---
i rheMac8.chrX                 I 215 C 0
s macNem1.NW_012017243v1          131170 26 +  25972781 AGGGGTGAGGGGAGGAGACGGGGGGG
i macNem1.NW_012017243v1       C 0 I 2
s colAng1.NW_012115411v1          152284 25 +   1230721 AGGGTTGAGGGGAGGAGCCAGAGGG-
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e macFas5.chr7                 171675185 263 - 171882078 I

a score=20354.000000
s hg38.chrX_KI270880v1_alt         22672 39 +    284869 GGTGAGAGGGGAGGAG---CCGGG-GGGGTGAGAGGG-GAGGAG
s gorGor5.CYUI01015925v1           92825 44 +    417917 GGTGAGAGGGGAGGAGAGACGGGGCGGGGTGAGAGGGAGGAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86362 36 + 149150640 GGTGAGAGGGGAGGAA--ACGGGG-----TGAGAGGG-GAGGAA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          131198 35 +  25972781 GGTGAGAGGGGAGGAG--GCAGGG------GTGAGGG-GAGGAG
i macNem1.NW_012017243v1       I 2 C 0
s colAng1.NW_012115411v1          152309 39 +   1230721 GGTGAGAGGGGAGGAG--ACGGGA--GGGTGAGAGGG-GAGGAG
i colAng1.NW_012115411v1       C 0 M 8532
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e macFas5.chr7                 171675185 263 - 171882078 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=531.000000
s hg38.chrX_KI270880v1_alt         22711 2 +    284869 CC
s gorGor5.CYUI01015925v1           92869 2 +    417917 AC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86398 2 + 149150640 AC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          131233 2 +  25972781 AC
i macNem1.NW_012017243v1       C 0 I 3
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e macFas5.chr7                 171675185 263 - 171882078 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=4045.000000
s hg38.chrX_KI270880v1_alt         22713 22 +    284869 GGGG-GGGGTGAGAGGGGAG--GAG
s gorGor5.CYUI01015925v1           92871 25 +    417917 GGGGCGGGGTGAGAGGGGAGGAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     86400 18 + 149150640 -----GGGGTGAGAGGGGAG--GAG
i rheMac8.chrX                 C 0 I 1107
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e macNem1.NW_012017243v1          131235  3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2016.000000
s hg38.chrX_KI270880v1_alt         22735 25 +    284869 CCGGGGGGGGGTGAGAGGGGAGGAG
s gorGor5.CYUI01015925v1           92896 25 +    417917 ACGGGGCGGGGTGAGAGGGGAGGAG
i gorGor5.CYUI01015925v1       C 0 I 973
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     86418 1107 + 149150640 I
e macNem1.NW_012017243v1          131235  3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         22760 346 +    284869 CCGGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGATGAGAGGGGAGGAGCCGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGTGAGAGGGGAGGAGCCGGGGGGGGTGAGAAGGGAGGACCCGGAGGGGGTGAGAGGGGAGGACCCGGGGGGGGGTGAGAGGGGAGGACCCGGGGGGGGGTGAGAGGGGAGGACCCGGGGGGGGGTGAGAGGGGAGGAGCTGGGGGGGGTGAGAGGGGAGGACCCGGG
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     86418 1107 + 149150640 I
e macNem1.NW_012017243v1          131235   3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2499.000000
s hg38.chrX_KI270880v1_alt         23106 45 +    284869 GGGGTGAGAGGGGAGGACCCGGGGGGGTGAGAGGGGAGGAGCCGG
s rheMac8.chrX                     87525 41 + 149150640 GGGGTGAGAGGGGAGGAGACGGGGGTG----AGGGGAGGAGGCAG
i rheMac8.chrX                 I 1107 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94388 194 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e macNem1.NW_012017243v1          131235  3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=5343.000000
s hg38.chrX_KI270880v1_alt         23151 21 +    284869 GGGGGTGAGAGGGGAGGAGAT
s rheMac8.chrX                     87566 21 + 149150640 AGGGGTGAGAGGAGAGGAGAT
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1           94582 21 -   1025902 GGGGGTGAGAGGGGAGGAGAC
i cerAty1.NW_012001098v1       I 194 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e macNem1.NW_012017243v1          131235  3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=7.000000
s hg38.chrX_KI270880v1_alt         23172 4 +    284869 GGGG
s cerAty1.NW_012001098v1           94603 4 -   1025902 AGAA
i cerAty1.NW_012001098v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587 0 + 149150640 C
e macNem1.NW_012017243v1          131235 3 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=5294.000000
s hg38.chrX_KI270880v1_alt         23176 19 +    284869 GGGGTGAGAGGGGAGGAGA
s macNem1.NW_012017243v1          131238 19 +  25972781 GGGGTGAGAGGGGAGGAGG
i macNem1.NW_012017243v1       I 3 C 0
s cerAty1.NW_012001098v1           94607 19 -   1025902 GGGGTGAGAGGGGAGGAGA
i cerAty1.NW_012001098v1       C 0 I 47
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587  0 + 149150640 C
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=-87.000000
s hg38.chrX_KI270880v1_alt         23195 4 +    284869 TGGG
s macNem1.NW_012017243v1          131257 4 +  25972781 CAGC
i macNem1.NW_012017243v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94626 47 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587 0 + 149150640 C
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=16162.000000
s hg38.chrX_KI270880v1_alt         23199 85 +    284869 GGGGGTGAGAGGGGAGGAGATGGGGGGGGTGAGAGGGGAGGAGATGGGGGGGGTGAGAGGGGAGGAGATGGGGGGGGTGAGAGGG
s macNem1.NW_012017243v1          131261 77 +  25972781 GGGGGTGAGAGGGGAGGAAACGGGGGT---GAGAG-GGAGGAGAC----GAGGTGAGAGGGGAGGAGACAGAGGGGGTGAGAGGG
i macNem1.NW_012017243v1       C 0 I 68
s cerAty1.NW_012001098v1           94673 82 -   1025902 GGGGGTAAGAGGGGAGGAGACAGAGGG---GTGAGAGGAGGAGACAGAAGGGGTGAGAGGGGAGGAGACAGAGGGGGTGAGAGGG
i cerAty1.NW_012001098v1       I 47 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587  0 + 149150640 C
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=673.000000
s hg38.chrX_KI270880v1_alt         23284 7 +    284869 GAGGAGA
s cerAty1.NW_012001098v1           94755 7 -   1025902 GAGGAGA
i cerAty1.NW_012001098v1       C 0 I 237
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587 0 + 149150640 C
e macNem1.NW_012017243v1          131338 68 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         23291 34 +    284869 TGGGGGGGGGCGAGAGGGGGGGAGGAGCCGGGGG
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587  0 + 149150640 C
e macNem1.NW_012017243v1          131338 68 +  25972781 I
e macFas5.chr7                 171675185 263 - 171882078 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=6776.000000
s hg38.chrX_KI270880v1_alt         23325 24 +    284869 GGGGTGAGAAGGGAGGAGACGGGG
s macFas5.chr7                 171675448 24 - 171882078 GGGGTGAGAGGGGAGGAGACGGGG
i macFas5.chr7                 I 263 C 0
s macNem1.NW_012017243v1          131406 24 +  25972781 GGGGTGAGAGGGGAGGAGACGGGG
i macNem1.NW_012017243v1       I 68 I 35
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587  0 + 149150640 C
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=100.000000
s hg38.chrX_KI270880v1_alt         23349 1 +    284869 G
s macFas5.chr7                 171675472 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587 0 + 149150640 C
e macNem1.NW_012017243v1          131430 35 +  25972781 I
e gorGor5.CYUI01015925v1           92921 973 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=-702.000000
s hg38.chrX_KI270880v1_alt         23350  4 +    284869 -------------GGGG-
s gorGor5.CYUI01015925v1           93894  4 +    417917 -------------GGGG-
i gorGor5.CYUI01015925v1       I 973 C 0
s macFas5.chr7                 171675473 18 - 171882078 GGTGGTTAGAGGAGGAGA
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587  0 + 149150640 C
e macNem1.NW_012017243v1          131430 35 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=600.000000
s hg38.chrX_KI270880v1_alt         23354 1 +    284869 C
s gorGor5.CYUI01015925v1           93898 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171675491 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          131465 1 +  25972781 C
i macNem1.NW_012017243v1       I 35 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87587 0 + 149150640 C
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=17010.000000
s hg38.chrX_KI270880v1_alt         23355 27 +    284869 GGGGTGAGAGGGGAGGAGACGGGGGGG
s gorGor5.CYUI01015925v1           93899 26 +    417917 GGGGTGAGGGGGGAGGAGA-GACGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     87587 27 + 149150640 GGGGTGAGAGGGGAGGAGACGGGGGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171675492 26 - 171882078 AGGG-GTGAGGGGAGGAGACGGGGAGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          131466 27 +  25972781 GGGGTGAGAGGGGAGGAGACAGAGGGG
i macNem1.NW_012017243v1       C 0 I 101
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=732.000000
s hg38.chrX_KI270880v1_alt         23382 3 +    284869 GGG
s gorGor5.CYUI01015925v1           93925 3 +    417917 CGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     87614 3 + 149150640 GGG
i rheMac8.chrX                 C 0 I 58
s macFas5.chr7                 171675518 3 - 171882078 GAG
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e macNem1.NW_012017243v1          131493 101 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=-813.000000
s hg38.chrX_KI270880v1_alt         23385 10 +    284869 GGTGAG---GGGA
s gorGor5.CYUI01015925v1           93928 13 +    417917 GGTGAGAGGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171675521  4 - 171882078 GGTT---------
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          152348 8532 +   1230721 M
e rheMac8.chrX                     87617 58 + 149150640 I
e macNem1.NW_012017243v1          131493 101 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2900.000000
s hg38.chrX_KI270880v1_alt         23395  9 +    284869 GGA--CCGCCT
s gorGor5.CYUI01015925v1           93941  9 +    417917 GGA--CCGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171675525 11 - 171882078 GGACCCCACCC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          160891  9 +   1230721 GGA--CCACCC
i colAng1.NW_012115411v1       M 8532 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e rheMac8.chrX                     87617 58 + 149150640 I
e macNem1.NW_012017243v1          131493 101 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=61359.000000
s hg38.chrX_KI270880v1_alt         23404 51 +    284869 TGTGCGGCATCAGCACGAACGTGGCAACTGCTCCCTCAGCCCAGTGCCAAC
s gorGor5.CYUI01015925v1           93950 51 +    417917 TGTGCGGCATCAGCACGAACGTGGCAACTGCTCCCTCAGCCCAGGGCCGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     87675 50 + 149150640 TGTGTGGCATCAGCACAAACGTGGCAACTGGTCCCTCAG-CCGGTGCCGAC
i rheMac8.chrX                 I 58 C 0
s macFas5.chr7                 171675536 50 - 171882078 TGTGTGGCATCAGCACAAACGTGGCAACTGGTCCCTCAG-CCGGTGCCGAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          131594 50 +  25972781 TGTGTGGCATCAGCACAAACGTGGCAACTGGTCCCTCAG-CCGGTGCCGAC
i macNem1.NW_012017243v1       I 101 C 0
s colAng1.NW_012115411v1          160900 50 +   1230721 TGTGTGGCATCAGCACAAACGCGGCAACTGGTCCTTCAG-CCGGTGCCGAC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                108839 875 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=152110.000000
s hg38.chrX_KI270880v1_alt         23455 125 +    284869 GTCCCCGGTGAG--CTCCGGCCCTAGGTTCTCTAGGTCACCCCTCGGGGGGTGTCGACGCCCCGAATAGGAGGTTCTTGCACTGTGAGACTAGGCACCTGTGGTGCTGGCCCTCCTCACAAACTCAG--------------------------------------
s gorGor5.CYUI01015925v1           94001 124 +    417917 GTCCCCAGTGAG--CTCCGGCCCTAGGTTCTCCAGGTCA-CCTTCGGGGGGCGTCGACGCCCCGAATAGGAGGTTCTCGCACTGTGAGACTAGGCACCTGTGGTGCTGGCCCTCGTCACAAACTCAG--------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     87725 121 + 149150640 GTCCCCAGTGAG--CCCCGG-CCTGGGTTCTCCAGGCCA-CCCTC-GGGGGTGTCGACG-CCCGAGTAGGAGGTTCTTGCGCCGTGAGACCGGACACCTGCGGTGCTGGGCCTCGTCACCAACTCAG--------------------------------------
i rheMac8.chrX                 C 0 I 25
s macFas5.chr7                 171675586 121 - 171882078 GTCCCCAGTGAG--CCCCGG-CCTGGGTTCTCCAGGCCA-CCCTC-GGGGGTGTCGACG-CCCGAGTAGGAGGTTCTTGCGCCGTGAGACCGGACACCTGCGGTGCTGGGCCTCGTCACCAACTCAG--------------------------------------
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          131644 122 +  25972781 GTCCCCGGTGAG--CCCCGG-CCTGGGTTCTCCAGGCCA-CCCTC-GGGGGTGTCGACGCCCCGAGTAGGAGGTTCTTGCGCCGTGAGACCGGACACCTGCGGTGCTGGGCCTCGTCACCAACTCAG--------------------------------------
i macNem1.NW_012017243v1       C 0 I 7
s colAng1.NW_012115411v1          160950 121 +   1230721 GTCCCCAGTGAG--CCCCGG-CCCGGATTCTCCAGGCCA-CCCTC-GGGGGTGTGGACGTCCCGAGTAGGAGGTTCTTGCGCCGTGAGAGTGGACACCTGCGGTGCT-GCCCTCATCACAAACTCAG--------------------------------------
i colAng1.NW_012115411v1       C 0 I 91
s saiBol1.JH378345                109714 162 +    465904 GTCCCCGAGGGGGTGCCCGGCCCTGGGCTCTGCAGGTC--CCCGA-GGGGGTGCCCCCGTCCTGAGCACGGCGTTCTCGCACCGTGACCCCGGGGGCCTGCGGTGCTGCGCTCCTCCTCAGTCTCACAGTGGGAGGGGCCCTTTCCCAGTGTCCCCTCACAGCAG
i saiBol1.JH378345             I 875 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2112.000000
s hg38.chrX_KI270880v1_alt         23580 5 +    284869 TAGGA
s gorGor5.CYUI01015925v1           94125 5 +    417917 TAGGA
i gorGor5.CYUI01015925v1       C 0 I 50
s macFas5.chr7                 171675709 5 - 171882078 TAGGA
i macFas5.chr7                 I 2 C 0
s saiBol1.JH378345                109876 3 +    465904 --GGA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e rheMac8.chrX                     87846 25 + 149150640 I
e macNem1.NW_012017243v1          131766 7 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=1678.000000
s hg38.chrX_KI270880v1_alt         23585 15 +    284869 CAG--CGCCTCACAGGG
s macFas5.chr7                 171675714 17 - 171882078 GCGGCCGTTTCCCAGGG
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                109879 15 +    465904 CAG--CGCCTCACAGGG
i saiBol1.JH378345             C 0 I 3
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e rheMac8.chrX                     87846 25 + 149150640 I
e macNem1.NW_012017243v1          131766  7 +  25972781 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=309.000000
s hg38.chrX_KI270880v1_alt         23600 11 +    284869 ACGTCCCCTCA
s macFas5.chr7                 171675731  7 - 171882078 ----TCCCCCA
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e rheMac8.chrX                     87846 25 + 149150640 I
e macNem1.NW_012017243v1          131766  7 +  25972781 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         23611 130 +    284869 CCCTGGTCCGTCCCCCCTCCCGTCTGTCCCCTCACCCTGGGCCGTCCCCCCTCCCGTCCGTCCCCTCACCCTGGGCCGTCCCCCCTCCCGTCCGTCCCCTCACCCTGGGCCGTCCCCCCTCCCGTCCGTC
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894   3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071  91 +   1230721 I
e rheMac8.chrX                     87846  25 + 149150640 I
e macNem1.NW_012017243v1          131766   7 +  25972781 I
e macFas5.chr7                 171675738   0 - 171882078 C
e gorGor5.CYUI01015925v1           94130  50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=8945.000000
s hg38.chrX_KI270880v1_alt         23741 34 +    284869 CCCTCACCCTGGGCCGTCCTCCCTCCCGTCCGTC
s rheMac8.chrX                     87871 34 + 149150640 CCCTCACCCCAGGCCGTCCTCTCTCCCGTCTGTC
i rheMac8.chrX                 I 25 C 0
s macNem1.NW_012017243v1          131773 34 +  25972781 CCCTCACCCCGGGCCGTCCTCTCTCCCGTCTGTC
i macNem1.NW_012017243v1       I 7 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e macFas5.chr7                 171675738  0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=100.000000
s hg38.chrX_KI270880v1_alt         23775 1 +    284869 C
s macNem1.NW_012017243v1          131807 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 I 1
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894 3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e rheMac8.chrX                     87905 0 + 149150640 C
e macFas5.chr7                 171675738 0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         23776 53 +    284869 CCTCTCCCTGGGCCGTCCTCCCTCCCGTCCGTCCCCTCTCCCTGGGCTGTCAT
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e colAng1.NW_012115411v1          161071 91 +   1230721 I
e rheMac8.chrX                     87905  0 + 149150640 C
e macNem1.NW_012017243v1          131808  1 +  25972781 I
e macFas5.chr7                 171675738  0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=859.000000
s hg38.chrX_KI270880v1_alt         23829 11 +    284869 CCGTCCCCTCT
s colAng1.NW_012115411v1          161162 11 +   1230721 CCGTCCCCTCA
i colAng1.NW_012115411v1       I 91 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e rheMac8.chrX                     87905  0 + 149150640 C
e macNem1.NW_012017243v1          131808  1 +  25972781 I
e macFas5.chr7                 171675738  0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=6366.000000
s hg38.chrX_KI270880v1_alt         23840 24 +    284869 CCCTGGGCCGTCCTCTCGCCCGTC
s macFas5.chr7                 171675738 24 - 171882078 CCCTGGGCCGTCCTCTCTCCCGTC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          161173 24 +   1230721 CCCTGGGCCGTCCTCTCTTCCGTC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e cerAty1.NW_012001098v1           94762 237 -   1025902 I
e rheMac8.chrX                     87905  0 + 149150640 C
e macNem1.NW_012017243v1          131808  1 +  25972781 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=207.000000
s hg38.chrX_KI270880v1_alt         23864 1 +    284869 C
s macFas5.chr7                 171675762 1 - 171882078 T
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           94999 1 -   1025902 C
i cerAty1.NW_012001098v1       I 237 C 0
s colAng1.NW_012115411v1          161197 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894 3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 73705 473 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e rheMac8.chrX                     87905 0 + 149150640 C
e macNem1.NW_012017243v1          131808 1 +  25972781 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=1623.000000
s hg38.chrX_KI270880v1_alt         23865 7 +    284869 GTCCCCT
s macFas5.chr7                 171675763 5 - 171882078 GTCCC--
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           95000 7 -   1025902 GTCCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          161198 5 +   1230721 GTCCC--
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 74178 7 +  11138919 GTACCCT
i otoGar3.GL873584             I 473 C 0
e cebCap1.NW_016107987v1          173045 2208 -    735872 I
e saiBol1.JH378345                109894 3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e rheMac8.chrX                     87905 0 + 149150640 C
e macNem1.NW_012017243v1          131808 1 +  25972781 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2967.000000
s hg38.chrX_KI270880v1_alt         23872 9 +    284869 CACCCTGGG
s cerAty1.NW_012001098v1           95007 9 -   1025902 CACCCTGGG
i cerAty1.NW_012001098v1       C 0 C 0
s cebCap1.NW_016107987v1          175253 9 -    735872 CACCCCGGG
i cebCap1.NW_016107987v1       I 2208 C 0
s otoGar3.GL873584                 74185 9 +  11138919 CACACTGCT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                109894 3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         78337 2755 -    811265 I
e colAng1.NW_012115411v1          161203 0 +   1230721 C
e rheMac8.chrX                     87905 0 + 149150640 C
e macNem1.NW_012017243v1          131808 1 +  25972781 I
e macFas5.chr7                 171675768 0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=-455.000000
s hg38.chrX_KI270880v1_alt         23881 2 +    284869 -CC
s rheMac8.chrX                     87905 2 + 149150640 -CC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1           95016 2 -   1025902 -CC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81092 2 -    811265 -cc
i chlSab2.chrUn_KE147541v1     I 2755 C 0
s cebCap1.NW_016107987v1          175262 2 -    735872 -CC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 74194 2 +  11138919 GT-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                109894 3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          161203 0 +   1230721 C
e macNem1.NW_012017243v1          131808 1 +  25972781 I
e macFas5.chr7                 171675768 0 - 171882078 C
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=37583.000000
s hg38.chrX_KI270880v1_alt         23883 15 +    284869 GTCCTCTCGCCCGTC
s rheMac8.chrX                     87907 15 + 149150640 GTCCTCTCGCCCACC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171675768 15 - 171882078 GTCCTCTCGCCCACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          131809 15 +  25972781 GTCCTCTCGCCCACC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1           95018 15 -   1025902 GTCCTCTCGCCCACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81094 15 -    811265 gtcctCTTGCCCACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          161203 15 +   1230721 GTCCTCTCGCCCGTC
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          175264 15 -    735872 GCCCTCTAACCCGTC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 74196 15 +  11138919 GTTCCCTCACCCAGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                109894  3 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e gorGor5.CYUI01015925v1           94130 50 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=1002467.000000
s hg38.chrX_KI270880v1_alt         23898 222 +    284869 CGTCCCCTCACCCTGGGCCATGCCCTCACGGGGC-ATCACCTTCAGTCCTCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTTCGGCACTGCTCCTCGTAGAAGTACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGCGGC
s gorGor5.CYUI01015925v1           94180 218 +    417917 CGTCCCCTCACCCTGGGCCGTGCCCTCACGGG-C-ATCACCTTCAGTCCTCG-CTTGACCAGGTC-AGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTTCGGCACTGCTCCTCATAGAAGTACTCGAGCTCGAACATGGACA-GGCACCGTCCCCGTCCAGATCCATGCAGCGGAACCAGTACTCGATGCTGCGGC
i gorGor5.CYUI01015925v1       I 50 C 0
s rheMac8.chrX                     87922 217 + 149150640 CGTCCCCTCACCCTGG-----GCCCTCCCGGGGC-GTCACCTTCGCTCCTCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGTGGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171675783 217 - 171882078 CGTCCCCTCACCCTGG-----GCCCTCCCGGGGC-GTCACCTTCGCTCCTCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGTGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          131824 217 +  25972781 CGTCCCCTCACCCTGG-----GCCCTCCCGGGGC-GTCACCTTCGCTCCTCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAATACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGTGGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95033 221 -   1025902 TGTCCCCTCACCCTGGGTCGTGCCCTCAC-GGGC-GTCACCTTCGCTCCTCGGCTTGACCAGGTCCAGCATCTGGCACAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGCGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81109 222 -    811265 CGTGCCCTCACCCTGGGCCGTGCCCTCCCGGGGC-GTCACCTTCGCTCCGCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCGAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGCGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          161218 220 +   1230721 TGTCCCCTCACC--GGGCCGTGCCCTCACGGGGC-GTCACCTTCGGTCCTCGGCTTGACCAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTTCGGCACTGCTCCTCGTAGAAGTACTCCAGCTCGAACATGGACAGGGCTCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCGATGCTGTGGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                109897 222 +    465904 CGTGCCCTCCCCCCGGCACCTGCCCTCCCGGGGC-GTCACCTTCGGTCCTCGGCTTGACGAGGTCCAGCATCTGGCAGAGGCAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCCAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAGGTCCATGCACCGGAACCAGTACTCGATGCTGCGGC
i saiBol1.JH378345             I 3 I 6
s cebCap1.NW_016107987v1          175279 220 -    735872 --CACCCTCCCCCTGGCCTGTGCCCTCGCGCTGC-GTCACCTTCGGTCCTCGGCTTGACGAGGTCCAGCATCTGGCAGAGACAGTCCTGGAAGGGCAGGGCCTCGATGGCCATGCTGTCCAGCCTCCGGCACTGCTCCTCGTAGAAGTACTCCAGCTCGAACATGGACAGGGCGCCGTCCCCGTCCAAATCCATGCACCGGAACCAGTACTCGATGCTGCGGC
i cebCap1.NW_016107987v1       C 0 I 496
s otoGar3.GL873584                 74211 223 +  11138919 TGTCCCCTCACATGGGGCTGTCCCCTCCCTGGGCTGCTACCTTCACTCTGTGGCTGTACCAGGTCCAGCATCTGGCAGAGGCAGTCCTCGAAGGGCAGGGCCTCAATGGCCATGCTGTCCAGCCTACGGCACTGCTCCTCGTAGAAGTACTCAAGCTCGAACATGGACAGCGCCCCGTCCCCGTCCAGGTCCATGCAGCGGAACCAGTACTCAATGCTGTAGC
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=125745.000000
s hg38.chrX_KI270880v1_alt         24120 57 +    284869 -ACGGCGAGCTCTGTCAGC--CCCTGCCCTGGGCCCTCCCAGCCCGTGACCTGCAGCCCC
s gorGor5.CYUI01015925v1           94398 57 +    417917 -ACGGCGAGCTCTGTCAGC--CCCTGCCCTAGGCCCTCCCAGCCCGTGACCTGCAGCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88139 56 + 149150640 -ACAGCGAGCTCTGTCGG---CCCCGCCCCGGACCCTCCCAGCCCGTGCCCTGCGGCCCC
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171676000 56 - 171882078 -ACAGCGAGCTCTGTCGG---CCCCGCCCCGGACCCTCCCAGCCCGTGCCCTGCGGCCCC
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          132041 56 +  25972781 -ACAGCGAGCTCTGTCGG---CCCCGCCCCGGACCCTCCCAGCCCGTGCCCTGCGGCCCC
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           95254 57 -   1025902 -ACAGCGAGCTCTGTCGGC--CCCCGCCCCGGACCCTCCCAGCCTGTGCCCTGCGGCCCC
i cerAty1.NW_012001098v1       C 0 I 38
s chlSab2.chrUn_KE147541v1         81331 55 -    811265 -ACAGCGAG--CTGTCGGC--CCCCGCCCCGGACCCTCCCAGCCCGTGCCCTGCAGCCCC
i chlSab2.chrUn_KE147541v1     C 0 I 85
s colAng1.NW_012115411v1          161438 56 +   1230721 -ACGGTGCGCTCTGTCAG---CCCCGGCTCCGACCCTCCCAGCCCGTGCCCTGCAGCCCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110125 59 +    465904 -GCTGTGAGCTCCCCCCACCACCCGGCCCCGGGCCCTCTCCGCGCCCCCTCTGCAGCCCC
i saiBol1.JH378345             I 6 I 19
s otoGar3.GL873584                 74434 37 +  11138919 CACATGAGCCACAGTCAGC--TACAAGCCGGGAC--------------ACCTG-------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=273.000000
s hg38.chrX_KI270880v1_alt         24177 1 +    284869 T
s gorGor5.CYUI01015925v1           94455 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          161494 1 +   1230721 T
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74471 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e rheMac8.chrX                     88195 1 + 149150640 I
e macNem1.NW_012017243v1          132097 1 +  25972781 I
e macFas5.chr7                 171676056 1 - 171882078 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=1500.000000
s hg38.chrX_KI270880v1_alt         24178 1 +    284869 G
s gorGor5.CYUI01015925v1           94456 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 I 396
s rheMac8.chrX                     88196 1 + 149150640 G
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171676057 1 - 171882078 G
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          132098 1 +  25972781 G
i macNem1.NW_012017243v1       I 1 C 0
s colAng1.NW_012115411v1          161495 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74471 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=1476.000000
s hg38.chrX_KI270880v1_alt         24179 2 +    284869 AG
s rheMac8.chrX                     88197 2 + 149150640 GG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676058 2 - 171882078 GG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132099 2 +  25972781 GG
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          161496 2 +   1230721 GG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74471 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e gorGor5.CYUI01015925v1           94457 396 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=8565.000000
s hg38.chrX_KI270880v1_alt         24181 6 +    284869 GCAGCC
s gorGor5.CYUI01015925v1           94853 6 +    417917 GCAGCC
i gorGor5.CYUI01015925v1       I 396 C 0
s rheMac8.chrX                     88199 6 + 149150640 GCAGCC
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171676060 6 - 171882078 GCAGCC
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          132101 6 +  25972781 GCAGCC
i macNem1.NW_012017243v1       C 0 I 292
s colAng1.NW_012115411v1          161498 6 +   1230721 GCAGCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 74471 1 +  11138919 -----C
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=2967.000000
s hg38.chrX_KI270880v1_alt         24187 3 +    284869 CCC
s gorGor5.CYUI01015925v1           94859 3 +    417917 CCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88207 2 + 149150640 -CC
i rheMac8.chrX                 I 2 I 1
s macFas5.chr7                 171676068 2 - 171882078 -CC
i macFas5.chr7                 I 2 I 1
s colAng1.NW_012115411v1          161504 3 +   1230721 TCC
i colAng1.NW_012115411v1       C 0 I 63
s otoGar3.GL873584                 74472 3 +  11138919 CCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e macNem1.NW_012017243v1          132107 292 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=6110.000000
s hg38.chrX_KI270880v1_alt         24190 52 +    284869 ACCGGGGGTGCACGCGTCCCCGCTGTGCCTTGCAGCCCCCACCGGGCGTGCA
s gorGor5.CYUI01015925v1           94862 52 +    417917 ACCGGGCGCACACGCGTTCCCCCTGTGCCTTGCAGCCCCCACCGGGCGCGCA
i gorGor5.CYUI01015925v1       C 0 I 54
s rheMac8.chrX                     88210 35 + 149150640 AACAGGCGTGCACGCATCCGCCC-GTGCCCTGCAGC----------------
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171676071 35 - 171882078 AACAGGCGTGCACGCATCCGCCC-GTGCCCTGCAGC----------------
i macFas5.chr7                 I 1 C 0
s otoGar3.GL873584                 74475 13 +  11138919 ---------ACAGGGACCCACC------------------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e colAng1.NW_012115411v1          161507 63 +   1230721 I
e macNem1.NW_012017243v1          132107 292 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         24242 4 +    284869 GGCA
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74488 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e colAng1.NW_012115411v1          161507 63 +   1230721 I
e rheMac8.chrX                     88245 0 + 149150640 C
e macNem1.NW_012017243v1          132107 292 +  25972781 I
e macFas5.chr7                 171676106 0 - 171882078 C
e gorGor5.CYUI01015925v1           94914 54 +    417917 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=291.000000
s hg38.chrX_KI270880v1_alt         24246 3 +    284869 TCC
s gorGor5.CYUI01015925v1           94968 3 +    417917 TCC
i gorGor5.CYUI01015925v1       I 54 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74488 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e colAng1.NW_012115411v1          161507 63 +   1230721 I
e rheMac8.chrX                     88245 0 + 149150640 C
e macNem1.NW_012017243v1          132107 292 +  25972781 I
e macFas5.chr7                 171676106 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=24368.000000
s hg38.chrX_KI270880v1_alt         24249 77 +    284869 CCTGCCCCCTGCCG--CCCCCACCGGGCGCGCACGCGTCCCC-----CTGTGCCGTGCAGCCC--CCACCAGGCGTGCACATGTCC
s gorGor5.CYUI01015925v1           94971 80 +    417917 CCTGCCCCCTGCAG--CCCCAAC-GGGTGCGCACGCATCCCCGTCCCCTGCCCCCTGCAGCCC--CCACCGGGCGTGCACA-GTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88245 64 + 149150640 ----------------CCCCCACCAGACGTGCACGCATCCGC-----CCGTGCCCTGCAGCCCC-CCACCAGACGTGCACGCATCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676106 64 - 171882078 ----------------CCCCCACCAGACGTGCACGCATCCGC-----CCGTGCCCTGCAGCCCC-CCGCCAGACGTGCACGCATCC
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          161570 81 +   1230721 CCTGTCCCCTGCGGCCCCTCTGCCAGGCGTGCACGTATCCAC-----CCATGCCCTGCGGCCCCTCTGCCAGGTGTGCACGTATCC
i colAng1.NW_012115411v1       I 63 C 0
s otoGar3.GL873584                 74488 26 +  11138919 ----------------------------------------------------CTGTGGAGAT---CTGCCAGGGATA-----GTCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e macNem1.NW_012017243v1          132107 292 +  25972781 I
e panPan2.chrUn_NW_014024225v1     60471 1130 +    105888 M

a score=6408.000000
s hg38.chrX_KI270880v1_alt         24326 24 +    284869 CCCTGTGCCGTGCAGCCC-----CCACC-G
s panPan2.chrUn_NW_014024225v1     61623 25 +    105888 CCCTGTCCCCTGCAGCCC-----CCACCCG
i panPan2.chrUn_NW_014024225v1 M 1130 C 0
s gorGor5.CYUI01015925v1           95051 24 +    417917 CCCTCTGCCGTGCAGCCC-----CCACC-G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88309 26 + 149150640 GCCCGTGCCCTGCAGCCCCTCTGCCA----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676170 26 - 171882078 GCCCGTGCCCTGCAGCCCCTCTGCCA----
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          161651 26 +   1230721 GCCTGTCCCCTGCGGCCCCTCTGCCA----
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 74514  9 +  11138919 --------CTTCAAGCC-------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I
e macNem1.NW_012017243v1          132107 292 +  25972781 I

a score=42020.000000
s hg38.chrX_KI270880v1_alt         24350 30 +    284869 GGCGTGCACATGTCCCCCTGTGCCGTGCAG
s panPan2.chrUn_NW_014024225v1     61648 30 +    105888 GGCGTGCACGCGTCCCCCTGTGCCGTGCAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95075 29 +    417917 GGCGTGCACGTGT-CCCCTGTGCCGTGCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88335 30 + 149150640 GGCGTGCGCGCATCCGCCCGTGCCCTGCAG
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171676196 30 - 171882078 GGCGTGCGCGCATCCGCCCGTGCCCTGCAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132399 30 +  25972781 GGCGTGCGCGTATCCGCCCGTGCCCTGCAG
i macNem1.NW_012017243v1       I 292 I 1
s colAng1.NW_012115411v1          161677 30 +   1230721 GGTGTGCACGTGTCCGCCCGTGCCCTGTGG
i colAng1.NW_012115411v1       C 0 I 4
s otoGar3.GL873584                 74523 16 +  11138919 ----------TGCCGACCTGGG----GCAG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e saiBol1.JH378345                110184 19 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I
e cerAty1.NW_012001098v1           95311 38 -   1025902 I

a score=181267.000000
s hg38.chrX_KI270880v1_alt         24380 92 +    284869 CCCCCAC--CAGGCGTGCAGGCATCCGCCTGGGGACACAT-----GTCACATGGGC-GGCTCCCGGCCCCTCCACTGGGACAAACGCATGCCGCAGCAGG
s panPan2.chrUn_NW_014024225v1     61678 94 +    105888 CCCCCACGACAGGCGTGCAGGCATCCGCCTGGGGACACAT-----GTCACATGGGT-GGCTCCCGGCCCCTCCACCGGGACAAACGCACGCCGCAGCAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95104 93 +    417917 CCCCCAC--CGGGCTTGCAGGCATCCGCCTGGGGACACAT-----GTCACATGGGCGGGCTCCCGGCTCCTCCACCGGGACAAACGCACGCCGCAGCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88366 90 + 149150640 TCCCCAC--CAGACGTGCGTGCATCCGCCTGGGGACACAC-----GTCACACGGGC-GGCTCCCGGC-CCTGCACT-GAACAAACCCGCACCGCGGCAGG
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171676226 90 - 171882078 CCCCCAC--CAGACGTGCGCGCATCCGCCTGGGGACACAC-----GTCACACGGGC-GGCTCCCGGC-CCTGCACT-GAACAAACGCGCACCGCGGCAGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132430 90 +  25972781 CCCCCAC--CAGGCGTGCGCGCATCCGCCTGGGGACACAC-----GTCACACGGGC-GGCTCCCGGC-CCCGCACT-GAACAAACCCGCACCGCGGCAGG
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1           95349 90 -   1025902 CCCCCAC--CGTGCGTGCATGCATCGGCCTGCGGACACAC-----GTCACACGGGC-GGCTCCCGGT-CCTGCACT-GCACAAACCCGCACCGCGGCAGG
i cerAty1.NW_012001098v1       I 38 C 0
s colAng1.NW_012115411v1          161711 96 +   1230721 CCCCCAC--CAGACAGGCAGGCATCCGCCTGGGGACACACGTCATGTCACACGGGC-GGCTCCCGGT-CCTCCACCAGAACACCCACACACCGCGGCAGG
i colAng1.NW_012115411v1       I 4 C 0
s saiBol1.JH378345                110203 92 +    465904 CCCCCAG--CAGGCGCGCACACATCCACCGGCGGACGCAC-----GTCACAGGCGA-GACTCGCAGCTCCGTCCCCAGCAGAAGAGCACGCTGTGGCAGG
i saiBol1.JH378345             I 19 C 0
s otoGar3.GL873584                 74539 33 +  11138919 --------------------------CTCTGGGGACACAG-----CTC-------T-GACT-------CTTCTACC-AAA--------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81386 85 -    811265 I

a score=-505.000000
s hg38.chrX_KI270880v1_alt         24472 1 +    284869 -A
s panPan2.chrUn_NW_014024225v1     61772 1 +    105888 -A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95197 1 +    417917 -A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88456 1 + 149150640 -A
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676316 1 - 171882078 -A
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132520 1 +  25972781 -A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95439 1 -   1025902 -A
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81471 1 -    811265 -A
i chlSab2.chrUn_KE147541v1     I 85 C 0
s colAng1.NW_012115411v1          161807 1 +   1230721 -A
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110295 1 +    465904 -A
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 74572 1 +  11138919 T-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          175499 496 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=648872.000000
s hg38.chrX_KI270880v1_alt         24473 128 +    284869 ACCCACCTGGTCGGTGTTTTTTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCGGCATAGCTGATCTTCCCTTCCTTCTGCACTTTTCTGCCTCTAGATCGAAAGCCAGGATGGAGAGACGAAGA
s panPan2.chrUn_NW_014024225v1     61773 128 +    105888 ACCCACCTGGTCGGTGTTTTTTTGTCTTCCTCAGACATCAAAAACCAGACAAAGTCGGCATAGCTGATCTTCCCTTCCTTCTGCACTTTTCTGCCTCTAGATCCAAAGCCAGGATGGAGAGACGAAGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95198 125 +    417917 ACCCACCT-GTCGGTG-TTTTTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCGGCATAGCTGATTTCCCTTCCTTTCTGCACTTTTCTGCCTCTAGATC-AATGCCAGGATGGAGAGACGAAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88457 128 + 149150640 ACCCACCTGGTCGGCGTTTTCTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCTGCGTAGCTGATCTTCCCTTCCTTCTGCGCTTTTCTGCCTCTAGACCCCAGGCCAGGATGGAGAGACGAAGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676317 128 - 171882078 ACCCACCTGGTCGGCGTTTTCTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCTGCGTAGCTGATCTTCCCTTCCTTCTGCGCTTTTCTGCCTCTAGACCCCAGGCCAGGATGGAGAGACGAAGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132521 128 +  25972781 ACCCACCTGGTCGGCGTTTTCTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCTGCGTAGCTGATCTTCCCTTCCTTCTGCGCTTTTCTGCCTCTAGACCCCAGGCCAGGATGGAGAGACGAAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95440 128 -   1025902 GCCCACCTGGTCGGCGTTTTCTTGTCTTCCTCAGAGATCAAAAACCAGACAAAGTCGGCGTAGCTGATCTTCCCTTCCTTCTGCGCTTTTCTGCCTCTAGACCCCAGGCCAGGATGGAGAGATGAAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81472 128 -    811265 ACCCACCTGGTCGGCGTTTTCTTGTCCTCCTCAGAGATGAGAAACCAGACGAAGTCGGCGTAGCTGATCTTCCCTTCCTTCTGCTCTTTCCTGCCTCTAGACCCCAGGCCAGGATGGAGACACGAAGA
i chlSab2.chrUn_KE147541v1     C 0 I 72
s colAng1.NW_012115411v1          161808 128 +   1230721 GCCCACCTGGTCGGCGTTTTTTTGTCTTCCTCAGAGATCAAAAACCAGACGAAGTCGGCGTAGCTGATCTTTCCTTCCTTCTGCACTTTTCTGCCTCTAGATCCCAGGCCAGGATGGAGAGATGCAGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110296 128 +    465904 ACCCACCTGGTCGGCGTCTTCTTGTCCTCTTCAGAGATGAGAAACCACACGAAGTCGGCGTAGCTGATCTTGCCCTCCTTCTGCACTCTTCTGCCTCTAGACCGGAGGCCGGGATGCAGAGACGAAGA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          175995 128 -    735872 ACCCACCTGGTCGGCGTCTTCTTGTCTTCTTCCGAGATGAGAAACCACACGAAGTCGGCGTAGCTGATCTTGCCCTCCTTCTGCACTCTTCTGCCTCTAGATTGGAGACCAGGATGGACAGACGAAGA
i cebCap1.NW_016107987v1       I 496 I 331
s otoGar3.GL873584                 74573 128 +  11138919 ACCTACCTGGTTGGAGTTTTCTTGTCTTCTTCAGAGATCAGAAACCAGACGAAGTCAGCGTAGCTTATTTTTCCTTCTTTCTGAACTTTTCTACCTCTTGGTTCAGGGCCAGAATAGAGAGACAAAGA
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=4542.000000
s hg38.chrX_KI270880v1_alt         24601 2 +    284869 TG
s panPan2.chrUn_NW_014024225v1     61901 2 +    105888 TG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95323 2 +    417917 TG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88585 2 + 149150640 TG
i rheMac8.chrX                 C 0 I 70
s macFas5.chr7                 171676445 2 - 171882078 TG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132649 2 +  25972781 TG
i macNem1.NW_012017243v1       C 0 I 70
s cerAty1.NW_012001098v1           95568 2 -   1025902 CG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          161936 2 +   1230721 CG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110424 2 +    465904 CG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 74701 2 +  11138919 CA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81600 72 -    811265 I

a score=57323.000000
s hg38.chrX_KI270880v1_alt         24603 40 +    284869 CATGTCAGGGAGAGCTTCA----------CAGGAACGGAGC---CCCTGTCCA
s panPan2.chrUn_NW_014024225v1     61903 40 +    105888 CATGTCAGGGAGAGCTTCA----------CAGGAACGGAGC---CCCTGCCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95325 39 +    417917 CATGTCAGCGAGAGCTTCA----------CA-GAACGGAGC---CCCTGCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676447 39 - 171882078 -GTGTCACGGAGAGACTCC----------CGGGCGTGGAGC---CCCTGCCCA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           95570 39 -   1025902 -GTGTCAGGGACAGCTTCC----------CAGGCGTGGAGC---CCCTGCCCA
i cerAty1.NW_012001098v1       C 0 I 34
s colAng1.NW_012115411v1          161938 40 +   1230721 CGTGTCAGGGAGAGCTTCC----------CAGGCGTGGAGC---CCCTGCCCA
i colAng1.NW_012115411v1       C 0 I 36
s saiBol1.JH378345                110426 39 +    465904 -CCGTCAGGGAGGGCAGCA----------CAGGCAGGGAGC---CCCTGCCCA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 74703 53 +  11138919 TCCATCAGGGAGAGGGTGCACACAGGGGGCAGGCAAGGGGCCCACCTTGCCCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81600 72 -    811265 I
e rheMac8.chrX                     88587 70 + 149150640 I
e macNem1.NW_012017243v1          132651 70 +  25972781 I

a score=17308.000000
s hg38.chrX_KI270880v1_alt         24643 56 +    284869 -CGCGCCTCGGTGAGGGGAGCCCCCCGGGCCCGgccctcctcctgcccccctcctgc
s panPan2.chrUn_NW_014024225v1     61943 48 +    105888 -CGCGCCTTGGTGAGGGGAGCCccccgggcccggccgtcctcctgcccc--------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95364 35 +    417917 -CGCCCCTCACTGAGGGGAGCCCCCGGG-------------CCGGCCCC--------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676486 45 - 171882078 -TGACCGGGGGCGAGAGGGGCCCCC--GGCCCAGCCCTCCTCCTGCCC---------
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                110465 48 +    465904 -TGACCCCGGGCGAGAGGAGCCCCCGGGGCCCAGCCCTCCTCCTGCTCC--------
i saiBol1.JH378345             C 0 I 2
s otoGar3.GL873584                 74756 41 +  11138919 TAGCACCTGGGCCAGAGCAGTCTT---GGTCAGGCCCTGGTCCT-------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81600 72 -    811265 I
e cerAty1.NW_012001098v1           95609 34 -   1025902 I
e colAng1.NW_012115411v1          161978 36 +   1230721 I
e rheMac8.chrX                     88587 70 + 149150640 I
e macNem1.NW_012017243v1          132651 70 +  25972781 I

a score=300.000000
s hg38.chrX_KI270880v1_alt         24699 1 +    284869 c
s rheMac8.chrX                     88657 1 + 149150640 C
i rheMac8.chrX                 I 70 C 0
s macNem1.NW_012017243v1          132721 1 +  25972781 C
i macNem1.NW_012017243v1       I 70 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e saiBol1.JH378345                110513 2 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74797 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81600 72 -    811265 I
e cerAty1.NW_012001098v1           95609 34 -   1025902 I
e colAng1.NW_012115411v1          161978 36 +   1230721 I
e macFas5.chr7                 171676531 0 - 171882078 C
e gorGor5.CYUI01015925v1           95399 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     61991 0 +    105888 C

a score=600.000000
s hg38.chrX_KI270880v1_alt         24700 1 +    284869 c
s rheMac8.chrX                     88658 1 + 149150640 C
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          132722 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81672 1 -    811265 C
i chlSab2.chrUn_KE147541v1     I 72 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e saiBol1.JH378345                110513 2 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74797 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           95609 34 -   1025902 I
e colAng1.NW_012115411v1          161978 36 +   1230721 I
e macFas5.chr7                 171676531 0 - 171882078 C
e gorGor5.CYUI01015925v1           95399 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     61991 0 +    105888 C

a score=2611.000000
s hg38.chrX_KI270880v1_alt         24701 2 +    284869 ct
s panPan2.chrUn_NW_014024225v1     61991 1 +    105888 -t
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95399 1 +    417917 -T
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88659 2 + 149150640 CT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          132723 2 +  25972781 CT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95643 2 -   1025902 CT
i cerAty1.NW_012001098v1       I 34 C 0
s chlSab2.chrUn_KE147541v1         81673 2 -    811265 CT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e saiBol1.JH378345                110513 2 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 74797 0 +  11138919 C
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          161978 36 +   1230721 I
e macFas5.chr7                 171676531 0 - 171882078 C

a score=143149.000000
s hg38.chrX_KI270880v1_alt         24703 44 +    284869 cctcctgcctctccGGGGAGGAGGTGGAGGCCCCGTGGCCAGAG
s panPan2.chrUn_NW_014024225v1     61992 44 +    105888 cctcctgcccctccAGGGAGGAGGTGGAGGCCCCATGGCCAGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95400 44 +    417917 CCTCCTGCCCCTCCAGGGAGGAAGTGGAGGCCCCGTGGCCAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88661 44 + 149150640 CCTCCTGCCCCTCCAGGGAGGACGTGGAGGCCCCGTGGCCAGAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676531 34 - 171882078 ----------CTCCAGGGAGGACGTGGAGGCCCCGTGGCCAGAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132725 44 +  25972781 CCTCCTGCCCCTCCAGGGAGGACGTGGAGGCCCCGTGGCCAGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95645 44 -   1025902 CCTCCTGCCCCTGCAGGGAGGACGTAGAGGCCCCGTGGCCAGAG
i cerAty1.NW_012001098v1       C 0 I 84
s chlSab2.chrUn_KE147541v1         81675 44 -    811265 CCTCCTGCCCCTCCAGGGAGAGCGTGGAGGCCCCGTGGCCAGAG
i chlSab2.chrUn_KE147541v1     C 0 I 81
s colAng1.NW_012115411v1          162014 44 +   1230721 CCTCCTGCCCCTCCAAGGAAGAGGTGGAGGCCACGTGGCCAGAG
i colAng1.NW_012115411v1       I 36 C 0
s saiBol1.JH378345                110515 31 +    465904 -------------CAGGGAGCAGGTGGAGGCCGCGCGGCCACAC
i saiBol1.JH378345             I 2 C 0
s otoGar3.GL873584                 74797 33 +  11138919 -----------CATGGGAGGGGCCTGAAGGCTGTGTGTCCCGTG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=70709.000000
s hg38.chrX_KI270880v1_alt         24747 38 +    284869 -GGTTTTCCCCAGATCCAGGCAGGGTCAGGAGTG--CACCT
s panPan2.chrUn_NW_014024225v1     62036 38 +    105888 -GGTTTCCCCCAGATCCAGGCGGGGTCAGGAGTG--CACCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95444 37 +    417917 -GGCTT-CCCCAGATCCAGGCGGAGTCAGGAGTG--CACCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88705 38 + 149150640 -GGCGTTCCCGAGATCCAGGTGGGGTCAGGAGTG--CACCT
i rheMac8.chrX                 C 0 I 48
s macFas5.chr7                 171676565 38 - 171882078 -GGCGTTCCCGAGATCCAGGTGGGGTCAGGAGTG--CACCT
i macFas5.chr7                 C 0 I 32
s macNem1.NW_012017243v1          132769 38 +  25972781 -GGCGTTCCTGAGATCCAGGTGGGGTCAGGAGTG--CACCT
i macNem1.NW_012017243v1       C 0 I 48
s colAng1.NW_012115411v1          162058 38 +   1230721 -CGCGTTCCCGAGATCCAGGTGGGGTCAGGAGTG--CACCT
i colAng1.NW_012115411v1       C 0 I 54
s saiBol1.JH378345                110546 36 +    465904 -GGCTTCCCCCACGTCCAGGCACGGTCGAGAGCG--CCC--
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 74830 39 +  11138919 AGGAGGACCCAGGTCCCA--TGGGCTCAGAAGCAGCCACCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81719 81 -    811265 I
e cerAty1.NW_012001098v1           95689 84 -   1025902 I

a score=4133.000000
s hg38.chrX_KI270880v1_alt         24785  8 +    284869 -----TCGTTACT
s panPan2.chrUn_NW_014024225v1     62074  8 +    105888 -----TCGTTACT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95481  8 +    417917 -----TCGTTACT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676635  8 - 171882078 -----ACGTCCCC
i macFas5.chr7                 I 32 I 8
s saiBol1.JH378345                110582  8 +    465904 -----CCATCACT
i saiBol1.JH378345             C 0 I 15
s otoGar3.GL873584                 74869 13 +  11138919 TCCCCAGGTTACT
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81719 81 -    811265 I
e cerAty1.NW_012001098v1           95689 84 -   1025902 I
e colAng1.NW_012115411v1          162096 54 +   1230721 I
e rheMac8.chrX                     88743 48 + 149150640 I
e macNem1.NW_012017243v1          132807 48 +  25972781 I

a score=245441.000000
s hg38.chrX_KI270880v1_alt         24793 79 +    284869 GCTCA------------CTCAGG---CCCAGCGCCCGACAAGAA--CCCCCGACCTGGGGCCTGGGCCACCCCCTTCCTCAGACTTCGCGTGAC--AG--
s panPan2.chrUn_NW_014024225v1     62082 79 +    105888 GCTCA------------CTCAGG---CCCAGCGCCCGACAAGAA--CCCCCGACCTGGGGCCTGGGCCACCCCCTTCCTCAGACCTCACGTGAC--AG--
i panPan2.chrUn_NW_014024225v1 C 0 I 2
s gorGor5.CYUI01015925v1           95489 78 +    417917 GCTCA------------CTCAGG---CCCAGCACCCGACAAGAA--CCCCCGACCT-GGGCCTGGGCTACCCCCTTACTCAGACCTCGCGTGAC--AG--
i gorGor5.CYUI01015925v1       C 0 I 2
s rheMac8.chrX                     88791 78 + 149150640 GCTCG------------CTCAGG---CCCAGCGCCCGACGAGGA--CCCCTGACCTGGGGCACGGGCCG-CCCCTTCCTCAGACCTCACATGAC--AG--
i rheMac8.chrX                 I 48 I 120
s macFas5.chr7                 171676651 80 - 171882078 GCTCG------------CTCAGG---CCCAGCGCCCGACGAGGA--CCCCTGACCTGGGGCACGGGCCG-CCCCTTCCTCAGACCTCACATGACAGAG--
i macFas5.chr7                 I 8 C 0
s macNem1.NW_012017243v1          132855 78 +  25972781 GCTCG------------CTCAGG---CCCAGCGCCCGACGAGGA--CCCCTGACCTGGGGCACGGGCCG-CCCCTTCCTCAGACCTCACGTGAC--AG--
i macNem1.NW_012017243v1       I 48 C 0
s cerAty1.NW_012001098v1           95773 78 -   1025902 GCTCG------------CCCAGG---CCCAGCGCCCGACAAGGA--CCCCCGACCTGGGGCACGGGCCG-CCCCTTCCTCAGACCTCACATGAC--AG--
i cerAty1.NW_012001098v1       I 84 I 2
s chlSab2.chrUn_KE147541v1         81800 81 -    811265 GCTCG------------CTCAGG---CCCAGCGCCCGACAAGGACCCCCCCGACCTGGGGCACGGGCCGCCCCCTTCCTCAGACCTCACATGAC--AG--
i chlSab2.chrUn_KE147541v1     I 81 I 43
s colAng1.NW_012115411v1          162150 76 +   1230721 GCTCG------------CTCAGG---CCCGGCGCCTGACAA-----CCCCTGACCTGGGGCACGGGCCGCCCCCTTCCTCAGACCTCACAGGAC--AG--
i colAng1.NW_012115411v1       I 54 I 4
s saiBol1.JH378345                110605 87 +    465904 GCCCGCAACCACCCCTTCTCGGGGCTCATGGCGCCCGACAAAAA--CCCCTGTCCT-------GGGCCATCCCCTTCCTCGGACCTCACGTGAC--AC--
i saiBol1.JH378345             I 15 I 4
s otoGar3.GL873584                 74882 73 +  11138919 -----------------CTGAAG---CCCAGTGCCTGGCACGGA--CACCAA---CAGGGCCTGTGCTGTCCCCTCAGTAGGGACCTCTGCAAC--AAGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=54630.000000
s hg38.chrX_KI270880v1_alt         24872 50 +    284869 TCTTGTGCCACCCCCCCCCACT-AGGGATTCACGTGACAG---AGACACGTGCC
s panPan2.chrUn_NW_014024225v1     62163 50 +    105888 TCTTGTGCCACCCCCCCCCACT-AGGGTTTCACGTGACAG---AGACACGTGCC
i panPan2.chrUn_NW_014024225v1 I 2 C 0
s gorGor5.CYUI01015925v1           95569 49 +    417917 TCTTGTGCCACCCGCCCCCACT-AGGGTTTCACGTGACAG---AGACACGTG-C
i gorGor5.CYUI01015925v1       I 2 C 0
s macFas5.chr7                 171676731 44 - 171882078 TGTCGTGC------CCCCCACT-AGGCTTTCGGGTGACAC---AGACACGTGTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132933 44 +  25972781 TGTCGTGC------CCCCCACT-AGGCTTTCGGGTGACAG---AGACACGTGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95853 44 -   1025902 TCTCGTGC------CCCCTACT-AGGGTTTCGGGTGACAG---AGACACGTGTC
i cerAty1.NW_012001098v1       I 2 C 0
s colAng1.NW_012115411v1          162230 44 +   1230721 TCTCGTGC------CCCCCACT-AGGGTTTCAGGTGACAG---AGACACGCGTC
i colAng1.NW_012115411v1       I 4 C 0
s saiBol1.JH378345                110696 26 +    465904 TCTTGTGT------CCCC--------GTCCCGCGCGAGGG--------------
i saiBol1.JH378345             I 4 C 0
s otoGar3.GL873584                 74955 45 +  11138919 GTCTGTGTC-----CCCTCACTCAAGACCTCCCATGACAGCTCAAGCATA----
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81881 43 -    811265 I
e rheMac8.chrX                     88869 120 + 149150640 I

a score=32498.000000
s hg38.chrX_KI270880v1_alt         24922 15 +    284869 CCCCTCGCCAGGGCC
s panPan2.chrUn_NW_014024225v1     62213 15 +    105888 CCCCTCCTCAGGGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95618 15 +    417917 CCCCTCCTCAGGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676775 15 - 171882078 CCCCTCCCCACGGCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          132977 15 +  25972781 CCCCTCCCCACGGCC
i macNem1.NW_012017243v1       C 0 I 59
s cerAty1.NW_012001098v1           95897 14 -   1025902 CCCTCCCCAGGGGC-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         81924 15 -    811265 CCCCTCCCCAGGGCC
i chlSab2.chrUn_KE147541v1     I 43 C 0
s colAng1.NW_012115411v1          162274 15 +   1230721 CCCCTCCTCAGGGCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 75000 15 +  11138919 CCCTCACTCAGGACC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e saiBol1.JH378345                110722  0 +    465904 C
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     88869 120 + 149150640 I

a score=22130.000000
s hg38.chrX_KI270880v1_alt         24937 22 +    284869 TGGGGTGACAACCACTCGCTGT
s panPan2.chrUn_NW_014024225v1     62228 22 +    105888 TGGGGTGACAGCCACTCGCTGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95633 22 +    417917 TGGGGTGACAGCCACTCGCTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676790  9 - 171882078 -------------AGTCGCTGT
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           95911 22 -   1025902 TGCGGTGACGGCCACTCGCTGT
i cerAty1.NW_012001098v1       C 0 I 50
s chlSab2.chrUn_KE147541v1         81939 22 -    811265 TGCGGTGACGGCCACTCGCTGT
i chlSab2.chrUn_KE147541v1     C 0 I 51
s colAng1.NW_012115411v1          162289 22 +   1230721 CGGGGTGACGGCCACTCGCTGT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110722  4 +    465904 ------------CAAT------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75015 21 +  11138919 TCCTGTGACAGTTG-TCATGGT
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     88869 120 + 149150640 I
e macNem1.NW_012017243v1          132992 59 +  25972781 I

a score=20146.000000
s hg38.chrX_KI270880v1_alt         24959 28 +    284869 CGGGGCACAAAAAGCTCACGTCAGGCAA
s panPan2.chrUn_NW_014024225v1     62250 28 +    105888 GGGGACACGAAAAGCTCATGTCAGGCAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95655 28 +    417917 TGGGACATGAAAAGCTCATGTCAGACAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676799 28 - 171882078 GGGAACTCGACAAGCTCGTGTCAGGCAA
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          162311 28 +   1230721 GGGAACTCGACAAGCTCATGTCAGGCAA
i colAng1.NW_012115411v1       C 0 I 22
s otoGar3.GL873584                 75036 23 +  11138919 CAGAACAGGGCAAGCTCACAGCA-----
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e saiBol1.JH378345                110726  0 +    465904 C
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81961 51 -    811265 I
e cerAty1.NW_012001098v1           95933 50 -   1025902 I
e rheMac8.chrX                     88869 120 + 149150640 I
e macNem1.NW_012017243v1          132992 59 +  25972781 I

a score=6570.000000
s hg38.chrX_KI270880v1_alt         24987 43 +    284869 CGATGAGGAGAGGGACCGGGGTCCTCGCAGGGG------------CAATGGCTGC
s panPan2.chrUn_NW_014024225v1     62278 43 +    105888 CGATGAGGAGAGGGACCCGGGTCCTCGCAGGGG------------CAATGGCTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95683 40 +    417917 CGAT---GAGAGGGACCCGGGTCCTCCAAGGGG------------CAATGGCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676827 22 - 171882078 ---------GGAGGAGCCGGGTCCTCGTGGG------------------------
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                110726 35 +    465904 -------GAGATGGCCCCGAGCCCTCACGTG-G------------CAGGGGCCGA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75059 48 +  11138919 -------GAGAGAACTCAGACTTCTCTCTTGGGGTTGTCCCTTGAAAATAGGAGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176123 331 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81961 51 -    811265 I
e cerAty1.NW_012001098v1           95933 50 -   1025902 I
e colAng1.NW_012115411v1          162339 22 +   1230721 I
e rheMac8.chrX                     88869 120 + 149150640 I
e macNem1.NW_012017243v1          132992 59 +  25972781 I

a score=4259.000000
s hg38.chrX_KI270880v1_alt         25030  8 +    284869 CGTCAGGC--
s panPan2.chrUn_NW_014024225v1     62321  8 +    105888 CGTCAGGC--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95723  8 +    417917 CGTCAAGC--
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                110761  8 +    465904 CGTCAGGC--
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          176454  8 -    735872 CGTCAGGA--
i cebCap1.NW_016107987v1       I 331 C 0
s otoGar3.GL873584                 75107 10 +  11138919 TGACTGGACA
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81961 51 -    811265 I
e cerAty1.NW_012001098v1           95933 50 -   1025902 I
e colAng1.NW_012115411v1          162339 22 +   1230721 I
e rheMac8.chrX                     88869 120 + 149150640 I
e macNem1.NW_012017243v1          132992 59 +  25972781 I
e macFas5.chr7                 171676849  0 - 171882078 C

a score=5500.000000
s hg38.chrX_KI270880v1_alt         25038 1 +    284869 G
s panPan2.chrUn_NW_014024225v1     62329 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95731 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88989 1 + 149150640 G
i rheMac8.chrX                 I 120 C 0
s macFas5.chr7                 171676849 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133051 1 +  25972781 G
i macNem1.NW_012017243v1       I 59 C 0
s cerAty1.NW_012001098v1           95983 1 -   1025902 G
i cerAty1.NW_012001098v1       I 50 C 0
s colAng1.NW_012115411v1          162361 1 +   1230721 G
i colAng1.NW_012115411v1       I 22 C 0
s saiBol1.JH378345                110769 1 +    465904 G
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          176462 1 -    735872 G
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 75117 1 +  11138919 G
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         81961 51 -    811265 I

a score=620044.000000
s hg38.chrX_KI270880v1_alt         25039 128 +    284869 CCTGAGCCGTACGTACCGTGTGACTGCTCCTGAGAAGATCCTGTCTATCATCTTGGTAGAAAGGGCTGGAAAGGAA-TGCGGTT----GATGGGCAGC---------CCGCACCGTGCCTCGG-CCCCGACGTCACCACCCCC
s panPan2.chrUn_NW_014024225v1     62330 128 +    105888 CCTGAGCCGTACGTACCGTGTGACTGCTCCTGAGAAGATCCTGTCGATCATCTTGGTAGAAATGGCTGGAAAGGAA-TGGGGTT----GATGGGCAGC---------CCGCACCGTGCCTCGG-CCCCGACGTCACCACCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95732 129 +    417917 CCTGAGCCGTACGTACCGTGTGACTGCTCCTGAGAAGATCCTGTCGATCATCTTGGTAGAAATGGCTGGAAAGGAA-TGGGGTT----GATGGGCAGC---------CCGCACCGTGCCTCGGCCCCCGACGTCACCACCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     88990 128 + 149150640 CCTGAGCCGCACGTACCGCGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGGTGGAAATGGCTGGAAAGGAA-GGGGGTT----GATGGGCAGC---------CCGCACCGCGCCTCGG-CCCCGATGTCACGACCCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676850 128 - 171882078 CCTGAGCCGCACGTACCGCGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGGTGGAAATGGCTGGAAAGGAA-GGGGGTT----GATGGGCAGC---------CCGCACCGCGCCTCGG-CCCCGATGTCACGACCCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133052 128 +  25972781 CCTGAGCCGCACGTACCGGGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGGTGGAAATGGCTGGAAAGGAA-GGGGGCT----GATGGGCAGC---------CCGCACCGCGCCTCGG-CCCCGATGTCACGACCCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           95984 132 -   1025902 CCTGAGCCGCACGTACCGCGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGGTAGAAATGGCTGGAAAGGAA-GGGGGTTGCTGGATGGACAGC---------CCGCACCGCGCCTCGG-CCCGGATGTCACGACCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         82012 128 -    811265 CCTGAGCCGCACGTACCGCGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGCTGGAAATGGCTGGAAAGGAA-GGGGGTT----GATGGGCAGC---------GCGCACCGCGCCTTGG-CCCCGATGTCACAACCCCC
i chlSab2.chrUn_KE147541v1     I 51 C 0
s colAng1.NW_012115411v1          162362 128 +   1230721 CCTGAGCCGCACGTACCGTGTGACTGCTCCGGAGAAGATCCTGTCGATCATCTTGGTAGAAATGGCTGGAAAGGAA-GGGGGTT----GATGGGCAGC---------CCGCACCGCGCCTCGG-CCCCCATGTCACGACCCCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110770 128 +    465904 CCTGAGCCGCACGTACCGCGTGACTGCTCCCGAGAAGATCCTGTCGATCATCTTGGTAGAAATGGCTGCAAAGACATTGGGGTT----GATGGGCAGC---------GCGCACCGCGCCTCCG-CCCTGATGCCACGACCCC-
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          176463 129 -    735872 CCTGAGCCGCACGTACCGCGTGACCGCTCCCGAGAAGATCCTGTCGATCATCTTGGTGGAAATGGCTGCAAAGGAATTGGGGTT----GATGAACAGC---------CCGCACCGGGCCTCGG-CCCTGATGCCACGACCCCC
i cebCap1.NW_016107987v1       C 0 I 84
s otoGar3.GL873584                 75118 117 +  11138919 CCCTGGCCACACGTACCGGGTCACCGCTCCAGAGAAGATCCTGTCGACCATCCTGGAGGAGATGGCTGCAGAGAAG-AAGGGGC----TGTGAGCAGTGGCATGGTGGCCCACTGCACCTCT---------------------
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=3710.000000
s hg38.chrX_KI270880v1_alt         25167 2 +    284869 CG
s panPan2.chrUn_NW_014024225v1     62458 2 +    105888 CA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95861 2 +    417917 CA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89118 2 + 149150640 CC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171676978 2 - 171882078 CA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133180 2 +  25972781 CC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96116 2 -   1025902 CC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         82140 2 -    811265 CG
i chlSab2.chrUn_KE147541v1     C 0 I 256
s colAng1.NW_012115411v1          162490 2 +   1230721 CA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110898 2 +    465904 CA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75235 2 +  11138919 CG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176592 84 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=37709.000000
s hg38.chrX_KI270880v1_alt         25169 14 +    284869 GAGCCGAGACTGGA
s panPan2.chrUn_NW_014024225v1     62460 14 +    105888 GAGCCGAGACTGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95863 14 +    417917 GAGCCGAGACTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89120 14 + 149150640 GAGCCGAGCCTGGA
i rheMac8.chrX                 C 0 I 272
s macFas5.chr7                 171676980 14 - 171882078 GAGCCGAGCCTGGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133182 14 +  25972781 GAGCCGAGCCTGGA
i macNem1.NW_012017243v1       C 0 I 272
s cerAty1.NW_012001098v1           96118 14 -   1025902 GAGCCGAGCCTGGA
i cerAty1.NW_012001098v1       C 0 I 182
s colAng1.NW_012115411v1          162492 14 +   1230721 GAACCAAGCCCGGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                110900 14 +    465904 AAGCCACGCCTGGA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75237 13 +  11138919 GAGTAGAGCCCTA-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176592 84 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I

a score=14710.000000
s hg38.chrX_KI270880v1_alt         25183 17 +    284869 TGCGGTGGGGACCGAAA
s panPan2.chrUn_NW_014024225v1     62474 17 +    105888 TGCGGTGGGGACCGAAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95877 17 +    417917 TGCGGTGGGGACCGAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171676994 17 - 171882078 CGGGGCAAGGACCGAAA
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          162506 17 +   1230721 TGGGGTAAGGACCGAAA
i colAng1.NW_012115411v1       C 0 I 201
s saiBol1.JH378345                110914 16 +    465904 TGCGGCGGGGACCGAA-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75250 13 +  11138919 TGGGGGGCTGACA----
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176592 84 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=26335.000000
s hg38.chrX_KI270880v1_alt         25200 68 +    284869 AGCTGAGAGGACGCCTGGGTCTGGGAGAGCCCCGGGGCCCCGATGCCCCTGCAC-GGCCCA-------TCCTAGGG
s panPan2.chrUn_NW_014024225v1     62491 68 +    105888 AGCTGAGAGGAGGCCTGGGTCTGGGAGAGCCCCGGGGCCCCGATGCCCCTGCAC-GGCCCC-------TCCTGGGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95894 66 +    417917 TGCTGAGAGGAGGCCTGGGTCTGGGAGAGCCCC-GGGCCCCGATGCCCCTGCAC-GGCCCC-------TCCTGGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677011 45 - 171882078 TGCCCACAGG------------------------CGGCCCCGGGGCCCCTGCACAGGCCCC-------TCCCGGGT
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                110930 66 +    465904 TGCCGGGAAG-CGCCTGAGTCTGGAAGGGGCCCGGGACCCCGACGCCCCCGCA--GGCTCC-------TCCCGGGT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 75263 55 +  11138919 AGAGCAGAGG---------------------CCATGGCTAGGAGGCCTCTGGACAGGCACTGTGCGAGCCCCGTGT
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          176592 84 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=62686.000000
s hg38.chrX_KI270880v1_alt         25268 79 +    284869 GCCCACCACGCTTTCCCGTCGAGCAGAGCCAAGTCCAGCATGAAATCCACAGAGCGCAAAGCTGA-CCGCGGCTCCAAGA
s panPan2.chrUn_NW_014024225v1     62559 79 +    105888 GCCCGCCACGCTTTCCCGTCAAGCAGAGCCAAGTCCAGTGTGAAATCCACAGAGCGCAAAGCTGA-CCGCGGCTCCAAGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           95960 80 +    417917 GCCCACCACGCTTTCCCGTCGAGCACAGCCAAGTCCAGCTTAAAATCCACAGAGCGCAAAGCTGACCCGCGGCTCCAAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677056 56 - 171882078 G-CAGCCACCCCTGCCCTTCGAGCGGACCCGGG------------------GCGCACGAAGCTGA-CCGTGGTTCA----
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                110996 79 +    465904 GCCCAGCGCCCTTTCCCGTCAAGCGGGGCCAGGCCCAGCATCAAATCCACAGTGTGCAAAGCTGA-CCGCGGTTCAAAGA
i saiBol1.JH378345             C 0 I 1
s cebCap1.NW_016107987v1          176676 79 -    735872 GCCCACCGCACTTTCCCGTCAAGCGGGGCCAGGCCCAGCATCAAACCCACGGTGTGCAAAGCTGA-CTGCGGCTCAAAGA
i cebCap1.NW_016107987v1       I 84 I 340
s otoGar3.GL873584                 75318 66 +  11138919 ACTCACCGCATGTTCC---CAGGTGGAACCGGACCCAGGTCAGACCCCACTG------AAGCTGA-C--GGGCCCAGA--
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=51312.000000
s hg38.chrX_KI270880v1_alt         25347 100 +    284869 CCGACTTGTAAAGAGCAGAATATTCA----GGCCTCAAAGGTACAGCTTTCAGACG----GAGAGAGAGACCTCGAGTGTGATCACGGAAACAAACACGTTTCAACCA
s panPan2.chrUn_NW_014024225v1     62638 100 +    105888 CCGACTTGTAAAGAGCAGAATATTCA----GGCCTCAAAGGTTCAGCTTTCAGACG----GAGAGAGAGACCTTGAGTGTGATCACGGAAACAAACACGTTTCAACCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96040  99 +    417917 CCGACTTGTAAAGAGCAGAATATTCA-----GCCTCAAAGGTTCAGCATTCAGAGG----GAGAGAGAGACCTCGAGTATGATCACGGAAACAAACACGTTTCAACCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677112  96 - 171882078 -------TTAAAGGGCGGAACCTTCA----GGCCTCACAGGTTCCGCTTCCAGACGCAGAGTGAGGGAGGCCTC-AGTGCCATCCCGAAAACAAACACGTTTCAGCCC
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                111076  92 +    465904 CAAGTTTCTCAAGAGCGGAGCACTCACGCGTGCCTCAAAGGTTCTGCTTCCAGAGG---------------CAC-AGTTCCAACACAAGAAGAAACGCGTTTCAACTG
i saiBol1.JH378345             I 1 C 0
s otoGar3.GL873584                 75384  89 +  11138919 CAGATCTGTGGGGAGCCGAACAAGCA----CGGCTCTCAGGGCCA-CCTGCTGTCA--------------CCCCAAACGCCACTACAGAAACCAGTGCCTTCCAACCA
i otoGar3.GL873584             C 0 I 2030
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=1000.000000
s hg38.chrX_KI270880v1_alt         25447 2 +    284869 AA
s panPan2.chrUn_NW_014024225v1     62738 2 +    105888 AA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96139 2 +    417917 AA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677208 2 - 171882078 AA
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                111168 2 +    465904 CA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=7032.000000
s hg38.chrX_KI270880v1_alt         25449 26 +    284869 GGTTCACCAACGGGAGACGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62740 26 +    105888 GCTTCACTAACGAGAGGCGGGAGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96141 25 +    417917 GGTTCACTAACAGGAGGCGGGAG-GA
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                111170 25 +    465904 -TGTCACTCACAAGAGACAACAGTGA
i saiBol1.JH378345             C 0 I 46
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C

a score=22529.000000
s hg38.chrX_KI270880v1_alt         25475 106 +    284869 GACCTCAGCAACGGGAGGCGGGAGTGAGACCTCAGCAACGGGAGGCGGGAGTGAGACCTCAGCAACGGGAGGC-GGGAGTGAGACCTCAGCAACGGGAGGCGGGAGG
s panPan2.chrUn_NW_014024225v1     62766 106 +    105888 GACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGC-GGGAGGGAGACCTCAGCAACAGGAGGCGGGAGG
i panPan2.chrUn_NW_014024225v1 C 0 T 81
s gorGor5.CYUI01015925v1           96166 101 +    417917 GACCTCAGCAACGGGAGGCGGGAG-GAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGGAGGGAGACCTC-GCACGGGGGGGAGG----
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C

a score=19011.000000
s hg38.chrX_KI270880v1_alt         25581 84 +    284869 GAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAG
s panPan2.chrUn_NW_014024225v1     62791 84 +    105888 GAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAG
i panPan2.chrUn_NW_014024225v1 T 81 C 0
s gorGor5.CYUI01015925v1           96267 80 +    417917 GAGACCTCAGCAA-GGGGGGCGGGAGGGAGA-CTCAGCAACGGGA-GCGGGAGGG-GACCTCAGCAACGGGAGGCGGGAGGGAA
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C

a score=1722.000000
s hg38.chrX_KI270880v1_alt         25665 23 +    284869 ACCTCGCCAACGGGAGGCGGGAG
s panPan2.chrUn_NW_014024225v1     62875 23 +    105888 ACCTCACTAACGAGAGGCAGGAG
i panPan2.chrUn_NW_014024225v1 C 0 T 27
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         25688 27 +    284869 GGAGACCTCGCCAACGGGAGGCGGGAG
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62898 27 +    105888 T

a score=2395.000000
s hg38.chrX_KI270880v1_alt         25715 30 +    284869 GGAGACCTCGCCAACGGGAGGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62871 30 +    105888 GGAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 T 27 T 153
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         25745 198 +    284869 GACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCC
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62901 153 +    105888 T

a score=2497.000000
s hg38.chrX_KI270880v1_alt         25943 27 +    284869 AACGGGAGGCGGGAGGGAGACCTCAGC
s panPan2.chrUn_NW_014024225v1     62748 27 +    105888 AACGAGAGGCGGGAGGGAGACCTCAGC
i panPan2.chrUn_NW_014024225v1 T 153 T 27
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C

a score=13613.000000
s hg38.chrX_KI270880v1_alt         25970 153 +    284869 AACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCGCCAAGGAGAGGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62748 153 +    105888 AACGAGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 T 27 T 81
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         26123 54 +    284869 GACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGA
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62901 81 +    105888 T

a score=5243.000000
s hg38.chrX_KI270880v1_alt         26177 66 +    284869 GACCTCAGCAACGGGAGGCGGGAGTGAGACCTCAGCAACGGGAGGCGGGAGTGAGACCTCGCCAAG
s panPan2.chrUn_NW_014024225v1     62820 66 +    105888 GACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAAC
i panPan2.chrUn_NW_014024225v1 T 81 T 138
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         26243 51 +    284869 GAGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCC
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62886 138 +    105888 T

a score=12393.000000
s hg38.chrX_KI270880v1_alt         26294 150 +    284869 AACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAG
s panPan2.chrUn_NW_014024225v1     62748 150 +    105888 AACGAGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAG
i panPan2.chrUn_NW_014024225v1 T 138 T 150
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         26444 93 +    284869 GGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCC
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62898 150 +    105888 T

a score=12328.000000
s hg38.chrX_KI270880v1_alt         26537 153 +    284869 AACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62748 153 +    105888 AACGAGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 T 150 T 135
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         26690 54 +    284869 GACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGTGA
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62901 135 +    105888 T

a score=10203.000000
s hg38.chrX_KI270880v1_alt         26744 135 +    284869 GACCTCGCCAACGGGAGGCGGGAGTGAGACCTCGCCAACGGGAGGCGGGAGGGAGACCTCGCCAACGGGAGGCGGGAGTGAGACCTCAGCAACGGGAGGCGGGAGTGAGACCTCACCAAGGAGACGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62766 135 +    105888 GACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 T 135 T 158
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         26879 140 +    284869 GACCTCAGCAACGGGAGGGGGGGAGGGAGACCTCACCAAGGAGACGCGGGAGTGAGACCTCAGCAACGGGAGGCGGTAGGGAGACCTCACCAAGGAGACGCGGGAGTGAGACCTCAGCAACGGGAGGCGGGAGGGAGACC
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62901 158 +    105888 T

a score=13354.000000
s hg38.chrX_KI270880v1_alt         27019 155 +    284869 TCACCAAGGAGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACGTCGCCAAGGAGAGGCGGGAG
s panPan2.chrUn_NW_014024225v1     62743 155 +    105888 TCACTAACGAGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAG
i panPan2.chrUn_NW_014024225v1 T 158 T 150
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195  46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210   0 - 171882078 C
e gorGor5.CYUI01015925v1           96347   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt         27174 12 +    284869 GGAGACGTCGCC
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     62898 150 +    105888 T

a score=5898.000000
s hg38.chrX_KI270880v1_alt         27186 75 +    284869 AACGGGAGGCGGGAGGGAGACGTCGCCAACGGGAGGCGGGAGGGAGACCTCACCAACGGGAGGCGGGAGTGAGAC
s panPan2.chrUn_NW_014024225v1     62748 75 +    105888 AACGAGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGAC
i panPan2.chrUn_NW_014024225v1 T 150 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e gorGor5.CYUI01015925v1           96347  0 +    417917 C

a score=15967.000000
s hg38.chrX_KI270880v1_alt         27261 78 +    284869 CTCACCAACGGGAGGCGGGAGGGAGACCTCAGCAACGGGAGGCGGGAGGGAGACCTCACCAACGGGAGGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62823 78 +    105888 CTCAGCAACAGGAGGCGGGAGGGAGACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 C 0 T 54
s gorGor5.CYUI01015925v1           96347 72 +    417917 CTCAG--ACGGGAGGCGGGAGG--GACCTCAGCAACGGGAGGCGGGAGGG-GACCTCAGCAACGGGAGGC-GGAGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C

a score=9529.000000
s hg38.chrX_KI270880v1_alt         27339 52 +    284869 GACCTCAGCAACGGGAGGCGGGATTGAGACCTCACCAACGGGAGGCCGGAGT
s panPan2.chrUn_NW_014024225v1     62847 52 +    105888 GACCTCAGCAACAGGAGGCGGGAGGGAGACCTCACTAACGAGAGGCAGGAGT
i panPan2.chrUn_NW_014024225v1 T 54 T 27
s gorGor5.CYUI01015925v1           96419 47 +    417917 GGCCTCAGCAACGGGAGGCGGGAGGG----CTCAGCAACG-GAGGCGGGAGT
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C

a score=4161.000000
s hg38.chrX_KI270880v1_alt         27391 29 +    284869 GAGACCTCACCAAGGAGAGGCGGGAGTGA
s panPan2.chrUn_NW_014024225v1     62872 29 +    105888 GAGACCTCACTAACGAGAGGCAGGAGTGA
i panPan2.chrUn_NW_014024225v1 T 27 I 29
s gorGor5.CYUI01015925v1           96466 26 +    417917 -GAGCCTCAGCAAC--GGAGCGGGAGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C

a score=3484.000000
s hg38.chrX_KI270880v1_alt         27420 55 +    284869 GACCTCACCAACGGGAGGCCGGAGTGAGACCTCACCAACGGGAGGCGGGAGGGAG
s gorGor5.CYUI01015925v1           96492 51 +    417917 G---CCACCAACGGGAGGCGGGAG-GAGACCTCACCAACGGGAGTCGGGAGGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e macFas5.chr7                 171677210  0 - 171882078 C
e panPan2.chrUn_NW_014024225v1     62901 29 +    105888 I

a score=2220.000000
s hg38.chrX_KI270880v1_alt         27475 13 +    284869 ACCTCACCAACGG
s gorGor5.CYUI01015925v1           96543 13 +    417917 ACCTCACCAACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677210 13 - 171882078 ACTCCGCTAACAA
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e colAng1.NW_012115411v1          162523 201 +   1230721 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e panPan2.chrUn_NW_014024225v1     62901 29 +    105888 I

a score=6399.000000
s hg38.chrX_KI270880v1_alt         27488 15 +    284869 GAGGCAGGAGTGAAA
s gorGor5.CYUI01015925v1           96556 15 +    417917 GAGGCGGGAGTGAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677223 15 - 171882078 GAGGCAAGAGCGGAG
i macFas5.chr7                 C 0 C 0
s colAng1.NW_012115411v1          162724 15 +   1230721 GAGGCAAGAGCGAAG
i colAng1.NW_012115411v1       I 201 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82142 256 -    811265 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e panPan2.chrUn_NW_014024225v1     62901 29 +    105888 I

a score=16297.000000
s hg38.chrX_KI270880v1_alt         27503 24 +    284869 GCACCGTC-GCCGTCAGCTTGGGCC-
s gorGor5.CYUI01015925v1           96571 25 +    417917 GCACCGTCCGCCGTCAGCTCGGGCC-
i gorGor5.CYUI01015925v1       C 0 I 3
s macFas5.chr7                 171677238 25 - 171882078 GCACCGAC-GCCGTCAGCTCCGGCCC
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         82398 25 -    811265 GCACCGTC-GCCGTCAGCTCCGGCCC
i chlSab2.chrUn_KE147541v1     I 256 C 0
s colAng1.NW_012115411v1          162739 25 +   1230721 GCACCGGC-GCCGTCAGCTCGGGCCC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I
e panPan2.chrUn_NW_014024225v1     62901 29 +    105888 I

a score=3633.000000
s hg38.chrX_KI270880v1_alt         27527 6 +    284869 ACGAGA
s panPan2.chrUn_NW_014024225v1     62930 6 +    105888 ACGAGA
i panPan2.chrUn_NW_014024225v1 I 29 C 0
s gorGor5.CYUI01015925v1           96599 6 +    417917 ACGAGA
i gorGor5.CYUI01015925v1       I 3 C 0
s macFas5.chr7                 171677263 5 - 171882078 ACGAG-
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         82423 5 -    811265 ACGAG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          162764 5 +   1230721 ACGAG-
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I
e rheMac8.chrX                     89134 272 + 149150640 I
e macNem1.NW_012017243v1          133196 272 +  25972781 I

a score=9158.000000
s hg38.chrX_KI270880v1_alt         27533 5 +    284869 AGGTC
s panPan2.chrUn_NW_014024225v1     62936 5 +    105888 AGGTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96605 5 +    417917 AGGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89406 5 + 149150640 AGGTC
i rheMac8.chrX                 I 272 C 0
s macFas5.chr7                 171677268 3 - 171882078 --GTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133468 5 +  25972781 AGGTC
i macNem1.NW_012017243v1       I 272 C 0
s chlSab2.chrUn_KE147541v1         82428 3 -    811265 --GTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          162769 3 +   1230721 --GTC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           96132 182 -   1025902 I

a score=39118.000000
s hg38.chrX_KI270880v1_alt         27538 12 +    284869 CCGCAGCCTGGG
s panPan2.chrUn_NW_014024225v1     62941 12 +    105888 CCGCAGCCTGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96610 12 +    417917 CCGCAGCCTGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89411 12 + 149150640 CCGCAGCCCGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171677271 12 - 171882078 CCGCAGCCCGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133473 12 +  25972781 CCGCAGCCCGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96314 12 -   1025902 CCGCAGCCTGGG
i cerAty1.NW_012001098v1       I 182 C 0
s chlSab2.chrUn_KE147541v1         82431 12 -    811265 CCGCAGCCCGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          162772 12 +   1230721 CCGCAGCCTGGG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e saiBol1.JH378345                111195 46 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=140477.000000
s hg38.chrX_KI270880v1_alt         27550 39 +    284869 CGGCCATCCCTGCGGTCACCGGTGTCCCTGGGACGCACG
s panPan2.chrUn_NW_014024225v1     62953 39 +    105888 CGGCCATCCCTGCAGTCACCGGTGTCCCTGGGACGCACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96622 39 +    417917 CGGCCATCCCTGCGGTCACCGGTGTCCCTGGGATGCACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89423 39 + 149150640 CGGCCATCCCTGCGGTCACCCGTGTCCCCGGCACGCACG
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171677283 39 - 171882078 CGGCCATCCCTGCGGTCACCCGTGTCCCCGGCACGCACG
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          133485 39 +  25972781 CGGCCATCCCTGCGGTCACCCGTGTCCCCGGCACGCACG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           96326 39 -   1025902 CGGCCATCCCTGCGGTCACCCGTGTCCCGGGCACGCACG
i cerAty1.NW_012001098v1       C 0 I 67
s chlSab2.chrUn_KE147541v1         82443 39 -    811265 CGGCCATCCCTGCCGTCTCCCGCGTCCCCGGCACGCACG
i chlSab2.chrUn_KE147541v1     C 0 I 2
s colAng1.NW_012115411v1          162784 39 +   1230721 CGGCCATCCCTGCGGTCCCCCGTGTCCCTGGCACGCACG
i colAng1.NW_012115411v1       C 0 I 1
s saiBol1.JH378345                111241 39 +    465904 CGGCCGTCCCTGAGGTCACCAGGGTCCCCGGGACGCAGG
i saiBol1.JH378345             I 46 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=119755.000000
s hg38.chrX_KI270880v1_alt         27589 51 +    284869 -AGCCAAGGTGCCGCCCCCCGCTTCAGGCCGCAGTGCGTGAGAAACAGCGCA
s panPan2.chrUn_NW_014024225v1     62992 48 +    105888 -AGCCAAGGTGCC---CCCCTCTTCAGGCCGCAGTGCGTGAGAAACAGCGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96661 48 +    417917 -AGCCAAGGTGCC---CCCCGCTTCAGGCCGCAGTGCGTGAGAAACAGCGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89463 47 + 149150640 -GGCCACGACG-C---CCCCGCTTCAGGCCGCCGTGTGTGAGAAACAGCCCA
i rheMac8.chrX                 I 1 I 20
s macFas5.chr7                 171677323 47 - 171882078 -GGCCAAGACG-C---CCCCGCTTCAGGCCGCCGTGTGTGAGAAACAGCCCA
i macFas5.chr7                 I 1 I 20
s macNem1.NW_012017243v1          133525 47 +  25972781 -GGCCAAGACG-C---CCCCGCTTCAGGCCGCCGTGTGTGAGAAACAGCCCA
i macNem1.NW_012017243v1       I 1 I 20
s chlSab2.chrUn_KE147541v1         82484 47 -    811265 -GGCCAAGATG-C---CCCCACTTCAGGCCGCCCTGCGTGACAAACAGCCCA
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1          162824 48 +   1230721 -GGCCAAGATGCC---CCCCGCTTCAGACCGCCCTGCGTGAGAAACAGCCCA
i colAng1.NW_012115411v1       I 1 I 20
s saiBol1.JH378345                111280 49 +    465904 GGGCCAAGATGCC---CCCAGCTTCAGGCCGCGCCACGTGAGAAACAGCCCA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           96365 67 -   1025902 I

a score=50400.000000
s hg38.chrX_KI270880v1_alt         27640 12 +    284869 GCCCGGCCGCAC
s panPan2.chrUn_NW_014024225v1     63040 12 +    105888 GCCCGGCCGCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96709 12 +    417917 GCCCGGCCGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89530 12 + 149150640 GCCCGGCCGCAC
i rheMac8.chrX                 I 20 C 0
s macFas5.chr7                 171677390 12 - 171882078 GCCCGGCCGCAC
i macFas5.chr7                 I 20 C 0
s macNem1.NW_012017243v1          133592 12 +  25972781 GCCCGGCCGCAC
i macNem1.NW_012017243v1       I 20 C 0
s cerAty1.NW_012001098v1           96432 12 -   1025902 GCCCGGCCGCAC
i cerAty1.NW_012001098v1       I 67 C 0
s chlSab2.chrUn_KE147541v1         82531 12 -    811265 GCCCGGCCGCAC
i chlSab2.chrUn_KE147541v1     C 0 I 195
s colAng1.NW_012115411v1          162892 12 +   1230721 GCCCGGCCGCAC
i colAng1.NW_012115411v1       I 20 C 0
s saiBol1.JH378345                111329 11 +    465904 -GCCGGCCGCAC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=171677.000000
s hg38.chrX_KI270880v1_alt         27652 87 +    284869 ACGGCATCCTGCCCTGGGACCGAGAGTGGGCTCCAGAGGAACGCGGAAAGCTGGGGCCGCGCCGGGCCGGGGGTTCACAGGGACAGT
s panPan2.chrUn_NW_014024225v1     63052 82 +    105888 ACGGCATCCTGCCCTGGGACCGAGAGTGGGCTCCAGAGGAACGCGGAAAGCTGGGGCCGCGCCGGG-----GTTTCACAGGGACAGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96721 81 +    417917 ACGGCATCCTGCCCT-GGACCGAGAGTGGGCTCCAGAGGAACGCGGAAAGCTGGGGCCGGGACGGC-----GGTTCACAGGGACAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89542 81 + 149150640 AGGCCATGCTGCCCGGAGACCCAGGGTGGGCACCAGAGGAACAGGGAAAGCCGGGG-CGGGCCCGG-----GGTTCCCAGGGACAGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171677402 81 - 171882078 AGGCCATGCTGCCCGGAGACCCAGGGTGGGCACCAGCGGAACAGGGAAAGCCGGGG-CGGGCCCGG-----GGTTCCCAGGGACAGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133604 81 +  25972781 AGGCCATGCTGCCCGGAGACCCAGGGTGGGCACCAGCGGAACAGGGAAAGCCGGGG-CGGGCCCGG-----GGTTCCCAGGGACAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96444 81 -   1025902 AGGCCATGCTGCCCGGAGACCCAGAGTGGGCACCAGCGGAACAGGGAAAGCCGGGG-CGGGCCCGG-----GGTTCCCAGGGACAGC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          162904 82 +   1230721 AGCCCGTCCTGCCCTGAGACCCACAGTGGGCACCAGAGGAACAGGGAAAGCCGGGGCCGGGCCCGG-----GGTTCACGGGGACAGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111340 79 +    465904 CCGCCACCCTGCCCCAAGACCCAGCGTGGGCCCCACAGGAACAGAGAGACCTGCGGCCGG--CGCG-----CGTTCACAGGGGCAC-
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          176755 340 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82543 195 -    811265 I

a score=264820.000000
s hg38.chrX_KI270880v1_alt         27739 96 +    284869 GAGCGCCTGGTTCTGGGCCGATTCCCAGCTGTGCAGGTGCTGGCCCAGGCCACACGGGCCGGCGCTGTGGAGCTGTGCTCTCCTCGTGGCTAGTT-A
s panPan2.chrUn_NW_014024225v1     63134 96 +    105888 GAGCGCCTGGTTCTGGGCCGATTCCCAGCTGTGCAGGTGCTGGCTCAGGCCACAAGGGCCGGCGCTGTGGAGCTGTGCTCTCCTCGTGGCTAGTT-A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96802 96 +    417917 GAGCGCCTGCTTCTGGGCCGAGTCCCAGCTGTGCAGGTGCTGGCTCAGGCCACACGGGCCGGCGCTGTGGAGCTGTGCTCTCCTCGTGGCTAGGT-A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89623 94 + 149150640 GAACGCCTGGTTCGGGGCCGATTCCCCGCGGTG-AAGCGCTGGCTCGGGCCACACGGG-CGGCTGTGCCGAGCTGGGCTCTCCTCGCGGCTACGT-G
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171677483 94 - 171882078 GAACGCCTGGTTCGGGGCCGATTCCCCGCGGTG-AAGCGCTGGCTCGGGCCACACGGG-CGGCTGTGCCGAGCTGGGCTCTCCTCGCGGCTACGT-G
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          133685 94 +  25972781 GAACGCCTGGTTCGGGGCCGATTCCCCGCGGTG-AAGCGCTGGCTCGGGCCACACGGG-CGGCTGTGCCGAGCTGGGCTCTCCTCGCGGCTACGT-G
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           96525 94 -   1025902 GAACGCCTGGTTCGGGGCCGACTCCCCGCGGTG-AAGCCGTGGCTCGGGCCACACGGG-CGGCTGTGCCGAGCTGGGCTCTCCTCGCGGCTACGT-G
i cerAty1.NW_012001098v1       C 0 I 1
s colAng1.NW_012115411v1          162986 94 +   1230721 GAACGCCCGGTTCGGGGCGGATTCCCCGTGGTG-AGGCGCTGGCTCGGGCCACACGGG-CGGCTCTGCCGAGCTGTGCTCTTCTCACGGCTACTT-A
i colAng1.NW_012115411v1       C 0 I 1
s saiBol1.JH378345                111419 97 +    465904 GAGCGCTGGGTTCTGGGCTGACTCCCAGCTGCGCAGGCGTTGGCACGGGCCACGTGCGGCGGCTCTGCGGGGCTGCGCTCCTTTCACTGCTAGTTAA
i saiBol1.JH378345             C 0 I 1
s cebCap1.NW_016107987v1          177095 96 -    735872 GAGCGCTGGGTTCTGCGCTGACTCCCAGCTGTGCAAGCGTTTGCACGGGCCACGCGGGGCGGCTCTGCGGGGCTGCGCTCCTTTCACAGCTAGTT-A
i cebCap1.NW_016107987v1       I 340 I 1
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82543 195 -    811265 I

a score=333850.000000
s hg38.chrX_KI270880v1_alt         27835 85 +    284869 GGGGCCCAGGGCGCAGGTGGCTCCCTGAACTGAGC-GCAGGACAAATCCAGGGAATGCTACGTCTGCTCAGGTGCGCGTCCGACGC
s panPan2.chrUn_NW_014024225v1     63230 85 +    105888 GGGGCCCAGGGCGCAGGTGGCTCCCTGAACTGAGC-GCAGGACAAATCCAGGGAATGCTACGTCTGCTCAGGTGCGCGTCCGACGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96898 84 +    417917 GGGGCCCAGGGCGCAGGTGGCTCCCTGAACTGAGCGGCAGGACAAATCCAGGGAATGCTACCTCTGCTCAGGT--GCGTCGGACGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89718 85 + 149150640 GGGGTCCAGGGCGCAGGTGGCTCCCTGAACCGGGC-ACAGGACAAATCCAGGCAATGCTACGTCTGCTCAGGGGCGCGTCCCACGC
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171677578 85 - 171882078 GGGGTCCAGGGCGCAGGTGGCTCCCTGAACCGGGC-ACAGGACAAATCCAGGCAATGCTACGTCTGCTCGGGGGCGCGTCCCACGC
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          133780 85 +  25972781 GGGGTCCAGGGCGCAGGTGGCTCCCTGAACCGGGC-ACAGGACAAATCCAGGCAATGCTACGTCTGCTCAGGGGCGCGTCCCACGC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1           96620 85 -   1025902 GGGGTCCAGGGCGCAGGTGGCTCCCTGAACCGGGC-ACAGGACAAATGCAGGGAACGCTACGTCTGCTCTGGGGCGCGTCCCACGC
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1         82738 85 -    811265 GGGGTCCGGGGCGCAGGTGGCTCCCTGAACCGGGC-ACAGGACAAACGCAGGGAATGCTACGTCTGCTCAGGGGCGCGTCCCACGC
i chlSab2.chrUn_KE147541v1     I 195 C 0
s colAng1.NW_012115411v1          163081 85 +   1230721 GGGGTCCAGGGCGCAGGTGGCTCCCTGAATCGGGT-ACAGGAGAAATCCAGGGAACGCTACGTCGGCTCGGGGGCGCGCCCCACGC
i colAng1.NW_012115411v1       I 1 C 0
s saiBol1.JH378345                111517 80 +    465904 GGGGCTCAGGGCTTAGGTGTCTCCCTGAAC----T-GAGGAACAGATCCAGGAAATGCTCCGTCCG-TCAGGTGCGCATCTCACGC
i saiBol1.JH378345             I 1 C 0
s cebCap1.NW_016107987v1          177192 85 -    735872 GGGGCTCAGGGCTTAGGCGTCTCCCTGAACTGCGT-GAGGAACAGATTCGGGAAATGCTACGTCTGCTCAGGTGCGCATCCTACGC
i cebCap1.NW_016107987v1       I 1 I 313
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=4095.000000
s hg38.chrX_KI270880v1_alt         27920 1 +    284869 A
s panPan2.chrUn_NW_014024225v1     63315 1 +    105888 A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96982 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89803 1 + 149150640 A
i rheMac8.chrX                 C 0 I 9
s macFas5.chr7                 171677663 1 - 171882078 A
i macFas5.chr7                 C 0 I 9
s macNem1.NW_012017243v1          133865 1 +  25972781 A
i macNem1.NW_012017243v1       C 0 I 9
s cerAty1.NW_012001098v1           96705 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 I 9
s chlSab2.chrUn_KE147541v1         82823 1 -    811265 A
i chlSab2.chrUn_KE147541v1     C 0 I 9
s colAng1.NW_012115411v1          163166 1 +   1230721 A
i colAng1.NW_012115411v1       C 0 I 78
s saiBol1.JH378345                111597 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=189958.000000
s hg38.chrX_KI270880v1_alt         27921 79 +    284869 -------GGGATCTACTGCGGCCACGCGACCCAGGACCAGCCCCGGGAGACGCAGACGGGTGCAGCTCACGTTCGGGGAACCAGGC
s panPan2.chrUn_NW_014024225v1     63316 79 +    105888 -------GGGATCTACTGCAGCCACGCGACCCAGGACCAGCCCCGGGAGACGCAGACAGGTGCAGCTCACGTTCAGGGAACCAGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           96983 79 +    417917 -------GGGATCTACTGCGGCCACGCGACCCAGGACCAGCCCCAGGAGACGCAGACGGGTGCAGCTCACTTTCGGGGAACCAGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89813 79 + 149150640 -------GGGGTCTACGGCGGCCGCGCGGCCCAGGAGCAGCCCCGGGAGACCCGGACGGGGGGAGCTCACATTCCGGGCACCAGGC
i rheMac8.chrX                 I 9 I 70
s macFas5.chr7                 171677673 79 - 171882078 -------GGGGTCTACGGCGGCCGCGTGGCCCAGGAGCAGCCCCGGGAGACCCGGACGGGCGGAGCTCACATTCCGGGCACCAGGC
i macFas5.chr7                 I 9 C 0
s macNem1.NW_012017243v1          133875 79 +  25972781 -------GGGGTCTACGGCGGCCGCGCGGCTCAGGAGCAGCCCCGGGAGACCCGGACGGGCGGAGCTCACATTCCGGGCACCAGGC
i macNem1.NW_012017243v1       I 9 C 0
s cerAty1.NW_012001098v1           96715 79 -   1025902 -------GGGGTCTACGGCGGCCGCGCGGCCCAGGACCAGCCCCGGGAGACCCGGACGGGCAGAGCCCACATTCCGGGCACCAGGC
i cerAty1.NW_012001098v1       I 9 C 0
s chlSab2.chrUn_KE147541v1         82833 79 -    811265 -------GGGGTCTAGGGTGGCCACGCGGCCCAGGACCAGCCCCGGGAGACGCGGACGGGCGGAGCCCACATTCCGGGCACCAGGC
i chlSab2.chrUn_KE147541v1     I 9 I 84
s saiBol1.JH378345                111598 79 +    465904 GGCAGGTGGGGTCCACCAGGT---CATGGCCCAGGGCCGGCCCC-GGAGACGCAGACGGGCGGGAGCCACCCTCAGGGAACCG---
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          163167 78 +   1230721 I

a score=14854.000000
s hg38.chrX_KI270880v1_alt         28000 24 +    284869 GTATTATGAGTCGACCACACACAA
s panPan2.chrUn_NW_014024225v1     63395 23 +    105888 ATAT-ATGAGTCGACCACACACAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97062 23 +    417917 ATAT-ATGAGTCGACCACACACAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677752 21 - 171882078 --AC-GCGAGTCGGCTGCGCGCAA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          133954 21 +  25972781 --AC-GCGAGTCGGCTGCGCGCAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96794 21 -   1025902 --AC-GCGAGTCGGCTGCGCGCAA
i cerAty1.NW_012001098v1       C 0 C 0
s saiBol1.JH378345                111677  7 +    465904 -----------------CGCAAAA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82912 84 -    811265 I
e colAng1.NW_012115411v1          163167 78 +   1230721 I
e rheMac8.chrX                     89892 70 + 149150640 I

a score=59579.000000
s hg38.chrX_KI270880v1_alt         28024 54 +    284869 CAGATGCCACCGTAATTCGGAAACAG---TCTTGGTCATATGG--TTTTTTGGGG-TAAA---------
s panPan2.chrUn_NW_014024225v1     63418 54 +    105888 CAGATGCCACCGTAATTCGGAAACAG---TCTTGGTCATATGG--TTTTTTGAGG-TAAA---------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97085 55 +    417917 CAGATGCCACCGTAATTCGGAAACAG---TCTTGGTCATATGG--TTTTTTGGGGATAAA---------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677773 47 - 171882078 CAGATGCCACCGTCACTGGGAAATAC---TCTTGGT---------TTTTTTGGGC-GGGG---------
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          133975 47 +  25972781 CAGATGCCACCGTCACTGGGAAATAC---TCTTGGT---------TTTTTTGGGC-GGGG---------
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1           96815 52 -   1025902 CAGGTGCCACCGTGACTCGGAAATAC---TCTTGGTCATACGG--TTTTTTGGGG-GA-----------
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          163245 54 +   1230721 CAGATGCCACCGTGACTGAGAAATAC---TCTTGGTCATGTGG-TTTTTTTGGGG-GAA----------
i colAng1.NW_012115411v1       I 78 C 0
s saiBol1.JH378345                111684 65 +    465904 CAG--GCCAGTG-AGCTCAGAAAGACCCTTCTTGGTAATGAGGTTTTCTTTGGGG-GGTGTGGGAGAGA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         82912 84 -    811265 I
e rheMac8.chrX                     89892 70 + 149150640 I

a score=116013.000000
s hg38.chrX_KI270880v1_alt         28078 39 +    284869 AAGCACACTTAAAGGAATCCTTTAGAAAACTCAAGCC-------CC
s panPan2.chrUn_NW_014024225v1     63472 39 +    105888 AAGCACACTTAAAGGAATCCTTTAGAAAACTCCAGCC-------CC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97140 46 +    417917 AAGCACACTTAAAGGAATCCTTTAGAAAACTCAAGCCCCACAGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     89962 39 + 149150640 AAGCAGACTTCAAGGAACCCTTTAGAAAACTCCAGCC-------GC
i rheMac8.chrX                 I 70 C 0
s macFas5.chr7                 171677822 39 - 171882078 AAGCAGACTTCAAGGAACCCTTTAGAAAACTCCAGCC-------GC
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          134024 39 +  25972781 AAGCAGACTTCAAGGAACCCTTTAGAAAACTCCAGCC-------GC
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1           96867 39 -   1025902 AAGCAGACTTCAAGGAACCCTTTAGAAAACTGCAGCC-------CC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         82996 39 -    811265 AAGCAGACTTCAAGGAATCCTTTAGAAAACTGCAGCC-------CC
i chlSab2.chrUn_KE147541v1     I 84 C 0
s colAng1.NW_012115411v1          163299 39 +   1230721 AAGCAGACTTCAAGGAATCCTTTAGGAAACTCCAGCC-------CC
i colAng1.NW_012115411v1       C 0 I 371
s saiBol1.JH378345                111749 34 +    465904 AAGGAAACTT----AAATCCTTTAGAAAAC-GAAACC-------AC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=32294.000000
s hg38.chrX_KI270880v1_alt         28117 13 +    284869 ACAGGCCACAGGC
s panPan2.chrUn_NW_014024225v1     63511 13 +    105888 ACAGGCCACAGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97186 13 +    417917 ACAGGCCACAGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90001 13 + 149150640 ACAGGCCACAGGC
i rheMac8.chrX                 C 0 I 43
s macFas5.chr7                 171677861 13 - 171882078 ACAGGCCACAGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134063 13 +  25972781 ACAGGCCACAGGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96906 13 -   1025902 ACAGGCCACAGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83035 13 -    811265 ACAAACCACAGGC
i chlSab2.chrUn_KE147541v1     C 0 I 45
s saiBol1.JH378345                111783  5 +    465904 -------ACAGG-
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          163338 371 +   1230721 I

a score=24665.000000
s hg38.chrX_KI270880v1_alt         28130 59 +    284869 CGCTTTGAGTTCCTGCAAGTGTGGATGACTCTTAGAGGGGCCGG-GAGGCAGTGGCTGCT
s panPan2.chrUn_NW_014024225v1     63524 59 +    105888 CGCTTTGAGTTCCTGCAAGTGTGGATGACTCTTAGAGGGGCCGG-GAGGCGGTGGCTGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97199 59 +    417917 CGCTTTGAGTTGCTGCAAGTGTGGATGACTCTTAGAGGGGCCGG-GAGGCGGTGGCTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171677874 43 - 171882078 AGGCTCTCGTCCCTGGAA-GCTGCACGACTATTACAGGAGCCGG----------------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134076 43 +  25972781 AGCCTCTCGTCCCTGGAA-GCTGCACGACTATTACAGGAGCCGG----------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96919 45 -   1025902 ACGTTCTCGTTCCCGGAAGGCGGCACGACTCTTAGAGAAGCCGGG---------------
i cerAty1.NW_012001098v1       C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e saiBol1.JH378345                111788  0 +    465904 C
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83048 45 -    811265 I
e colAng1.NW_012115411v1          163338 371 +   1230721 I
e rheMac8.chrX                     90014 43 + 149150640 I

a score=41950.000000
s hg38.chrX_KI270880v1_alt         28189 27 +    284869 GTGAGGACACCTGGGCGGCACCGGCTC
s panPan2.chrUn_NW_014024225v1     63583 27 +    105888 GTGAGGACACCTGGGCGGCACCGGCTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97258 27 +    417917 GTGAGGACACCTGGGCGGCACCGGCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90057 27 + 149150640 GTGAGGACACCGGGGAGGCGCCGCCTC
i rheMac8.chrX                 I 43 C 0
s macFas5.chr7                 171677917 27 - 171882078 GTGAGGACACCGGGGAGGCGCCGCCTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134119 27 +  25972781 GTGAGGACACCGGGGAGGCGCCGCCTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96964 13 -   1025902 -TGAGGACATCG-------------CT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          163709 27 +   1230721 GTGAGGACACCTGGGAGGCACCGCCTC
i colAng1.NW_012115411v1       I 371 C 0
s saiBol1.JH378345                111788 10 +    465904 -----AATAC------------GGCTC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83048 45 -    811265 I

a score=141641.000000
s hg38.chrX_KI270880v1_alt         28216 54 +    284869 CCGCGGAGGTATATGAACGACCGCTAAGCCTGGGGCTCCA-------------CCTAGCCCGGGATT
s panPan2.chrUn_NW_014024225v1     63610 54 +    105888 CCGCGGAGGTATTTGAAGGACCGCTAAGCCTGGGACTCCA-------------CCTAGTCCGGGATT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97285 54 +    417917 CCGCGGAGGTATTTGAAGGATCTCTAAGCCTGGGGCTCCA-------------CCTAGCCCGGGATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90084 53 + 149150640 CCGCGGAGGGATCTGACCGCCCTCTAAGCCCGCG-CTCCA-------------CCCAGTCGGGGACT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171677944 53 - 171882078 CCGCGGAGGGATCTGACCGCCCTCTAAGCCCGCG-CTCCA-------------CCCAGTCGGGGACT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134146 53 +  25972781 CCGCGGAGGGATCTGACCGCCCTCTAAGCCCGCG-CTCCA-------------CCCAGTCGGGGACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           96977 53 -   1025902 CCGCGGAGGGATCTGACCGACCTCTAAGCCCGCG-CTCCC-------------CCTAGTCGGGGATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83093 53 -    811265 CCGCGGAGGGATCTGACCGACCTCTAAGCCTGCG-CTCCA-------------CCCAGTCCAGGATT
i chlSab2.chrUn_KE147541v1     I 45 C 0
s colAng1.NW_012115411v1          163736 53 +   1230721 CCGCGGAGGTATCTGACCGACCTCTAAGCCTGCG-CCCCA-------------CCCAGCCTGGGATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111798 67 +    465904 CCGCTGCTGTAGCTGAGCCTCCTCTAAGCCTGGGGCCCCACGTTCGGGAGCTGCCCAGTGAGAGATG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177277 313 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=202431.000000
s hg38.chrX_KI270880v1_alt         28270 43 +    284869 GGATGGAAACTGCTCCAGGCCTTGGGGGCTGGAACCTGGAGCT
s panPan2.chrUn_NW_014024225v1     63664 43 +    105888 GGATGGAAACTGCTCCAGGCCTTGGGGGCTGCAACCTGGAGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97339 43 +    417917 GGATGGAAACTGCTCCAGGCCTTGGGGGCTGGAACCTGGAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90137 43 + 149150640 GGATGGAAACTGCTCCCGGCCTTGGGGGCTGGAACCTGGAGCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171677997 43 - 171882078 GGATGGAAACTGCTCCCGGCCTTGGGGGCTGGAACCTGGAGCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134199 43 +  25972781 GGATGGAAACTGCTCCCGGCCTTGGGAGCTGGAACCTGGAGCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97030 43 -   1025902 GGATGGAAACTGCTCCCCGCCTTGGGGGCTGGAACCTGGAGCT
i cerAty1.NW_012001098v1       C 0 I 37
s chlSab2.chrUn_KE147541v1         83146 43 -    811265 GCATGGAAACTGCTCCCGGCCTTGGGGGCTGGAACCTGGAGCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          163789 43 +   1230721 GGATGGAAACTGCTCCCGGCCTTGGGGGCTGGAACCCGGAGCT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111865 43 +    465904 GGATGGAAACTGGTCCAGGCCTTGGAGGCTGGAAGCTGGAGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          177590 43 -    735872 GGATGGAAACTGGTCCAGGCCTTGGAGGCTGGAACCTGGAGCC
i cebCap1.NW_016107987v1       I 313 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=15292.000000
s hg38.chrX_KI270880v1_alt         28313 12 +    284869 CCTGAGGGAAGG
s panPan2.chrUn_NW_014024225v1     63707 12 +    105888 CCTGAGGGAAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97382 12 +    417917 CCTGAGGGAAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90180  8 + 149150640 ---GAG-GGACG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678040  8 - 171882078 ---GAG-GGACG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134242  8 +  25972781 ---GAG-GGACG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83189 11 -    811265 CCTGAG-GGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          163832 12 +   1230721 CCTGAGCTAAGG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111908 12 +    465904 TGTGAGGGAAGG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          177633 12 -    735872 TGTGAGGGAAGG
i cebCap1.NW_016107987v1       C 0 I 68
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           97073 37 -   1025902 I

a score=16257.000000
s hg38.chrX_KI270880v1_alt         28325 9 +    284869 CGTGTGGCC
s panPan2.chrUn_NW_014024225v1     63719 9 +    105888 CGTGTGGTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97394 9 +    417917 CGTGTGGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90188 9 + 149150640 CGGCTGGTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678048 9 - 171882078 CGGCTGGTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134250 9 +  25972781 CGGCTGGTC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83200 9 -    811265 CGGCTGGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          163844 9 +   1230721 CGTCAGGTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111920 3 +    465904 ------GTC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177645 68 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           97073 37 -   1025902 I

a score=162935.000000
s hg38.chrX_KI270880v1_alt         28334 60 +    284869 TGCCCGCCCTTGCTC-GGGTGTTAACAAGGAAGCCCCACAGCGCTG--------CTGGCCCTC-----GGGCCA
s panPan2.chrUn_NW_014024225v1     63728 60 +    105888 TGCCCGCCCTTGCTC-GGGTGTTAACAAGGAAGCCCCACAGCGCTG--------CTGGCCCTC-----GGGCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97403 59 +    417917 TGCCCGCCCTTGCTCGGGGTGTTAACAAGGAAGCCCCACAGCGCTG--------CTGGCCCT-------GGCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90197 60 + 149150640 TGCACGCCCTTGCTC-GGGTGTTAACAATGAAGCCGCGCGGGACTG--------CAGGCCCTC-----GGGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678057 60 - 171882078 TGCACGCCCTTGCTC-GGGTGTTAACAATGAAGCCGCGCGGGACTG--------CAGGCCCTC-----GGGCCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134259 60 +  25972781 TGCACGCCCTTGCTC-GGGTGTTAACAATGAAGCCGCGCGGGACTG--------CAGGCCCTC-----GGGCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97110 68 -   1025902 tgctcgcccttgctc-gGGTGTTAACAATGAAGCCGCGCAGGGCTGCAGGCCCTCAGGCCCTC-----GGGCCG
i cerAty1.NW_012001098v1       I 37 C 0
s chlSab2.chrUn_KE147541v1         83209 60 -    811265 TGCGCGCCCTTGCTC-GGGTGTTAACAATGAAGCCGCGCAGGGCTG--------CAGGCCCTC-----GGGCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          163853 61 +   1230721 TGCACGCCCTTGCCC-GGGTGTTAACAATAAAGCCCCGCGGGGTTG--------CAGGCCCTC----GGGGCCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111923 63 +    465904 TGCGCGCGCT--CTC-GCGTCCTAACGATGAAGACCCGCGACGGTG--------GTGTCGCAAAGGGGTGGCTG
i saiBol1.JH378345             C 0 I 2
e cebCap1.NW_016107987v1          177645 68 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=336534.000000
s hg38.chrX_KI270880v1_alt         28394  88 +    284869 G------------GAGCTTCAGGACCAGCGGCCCACACTGACCCTGTAGACGCCCCCAGGCAGAGGCCTCGGGCAGAGGCGCACGCGGGGACCCAGACAC
s panPan2.chrUn_NW_014024225v1     63788  88 +    105888 G------------GAGCTTCAGGACCAGCGGCCCACACTGACCCTGTAGACGCCGGCAGGCAGAGGCCTCGGGCAGAGGCGCACGCGGGGACCCAGATAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97462  88 +    417917 A------------GAGCTTCAGGACCAGCGGCCGACACTGACCCTGTAGACGCCCGCAGGCAGAGGACTCGGGCAGGGGCGCACGCGGGGACCCAGACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90257 100 + 149150640 GGTGCGGCTGTCTGAGCCTCAGGACCAGCGGCCCACACGGACCCTGCAAACACCCGGGGGAGGACGCCTGGTGCAGAGGCGCACGCAGGGACCCAGACAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678117 100 - 171882078 GGTGCGGCTGTCTGAGCCTCAGGACCAGCGGCCCACACGGACCCTGCAAACGCCCGGGGGAGGACGCCTGGTGCAGAGGCGCACGCAGGGACCCAGACAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134319 100 +  25972781 GGTGCGGCTGTCTGAGCCTCAGGACCAGCGGCCCACACGGACCCTGCAGACGCCCGGGGGAGGACGCCTGGTGCAGAGGCGCACGCAGGGACCCAGACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97178 100 -   1025902 GGTGCGGCTGTCTGAGCCTCAGGACCAGCGGCCCACCCGGACCCTGTAGACGCCCGGGGGCGGAGGCCTCGCGCAGAGGCGCACGCGGGGACCCAGACAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83269  92 -    811265 GGTGCGGCTGTCTGAGCCTCA--------GGCCCGCCCGGACCCTGTAAACGGCCGGGGGCGGAGGCCTGGTGCAGAGGCGCACGCGGGGACCCAGACAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          163914  98 +   1230721 GGTGCGGCTGTCTGAGCCTCAGGAC--GGGGCCCACACTGACCCTGTAGACGCCCGGGGGCGGAGGCCTGGTGCAGAGGCGCACGCGGGGACCCAGACAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                111988  88 +    465904 ------------GGAGCCTCAGGACCAGCGGACCACACTGACCCCGTAGGCGCCAGCCGCCAGAGGTGTGGTGCAGGGGCGCACGCCGGGACCCAGACAC
i saiBol1.JH378345             I 2 C 0
s cebCap1.NW_016107987v1          177713  88 -    735872 ------------GGAGCCTCAGGACCAGCGGACCACACTGACCCCGTAGGCGCCAGCCGCCAGAGGTGTGGTGCAGGGACGCACGCTGGGACCCAGACAC
i cebCap1.NW_016107987v1       I 68 I 10
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=3321.000000
s hg38.chrX_KI270880v1_alt         28482 1 +    284869 G
s panPan2.chrUn_NW_014024225v1     63876 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97550 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90357 1 + 149150640 G
i rheMac8.chrX                 C 0 I 8
s macFas5.chr7                 171678217 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134419 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97278 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83361 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164012 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                112076 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          177801 10 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=1842.000000
s hg38.chrX_KI270880v1_alt         28483 9 +    284869 GGGCAGCGA
s panPan2.chrUn_NW_014024225v1     63877 9 +    105888 GGGCAGCGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97551 9 +    417917 GCGAGGCGA
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                112077 8 +    465904 -AGGAGTGG
i saiBol1.JH378345             C 0 I 1
e cebCap1.NW_016107987v1          177801 10 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362 0 -    811265 C
e cerAty1.NW_012001098v1           97279 0 -   1025902 C
e colAng1.NW_012115411v1          164013 0 +   1230721 C
e rheMac8.chrX                     90358 8 + 149150640 I
e macNem1.NW_012017243v1          134420 0 +  25972781 C
e macFas5.chr7                 171678218 0 - 171882078 C

a score=10811.000000
s hg38.chrX_KI270880v1_alt         28492 7 +    284869 CTGGGGA
s panPan2.chrUn_NW_014024225v1     63886 7 +    105888 GTGGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97560 7 +    417917 CTGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678218 6 - 171882078 -CGGGGA
i macFas5.chr7                 C 0 I 26
s macNem1.NW_012017243v1          134420 6 +  25972781 -CGGGGA
i macNem1.NW_012017243v1       C 0 C 0
s saiBol1.JH378345                112086 7 +    465904 CTGGGGA
i saiBol1.JH378345             I 1 C 0
s cebCap1.NW_016107987v1          177811 7 -    735872 CTGGGGA
i cebCap1.NW_016107987v1       I 10 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362 0 -    811265 C
e cerAty1.NW_012001098v1           97279 0 -   1025902 C
e colAng1.NW_012115411v1          164013 0 +   1230721 C
e rheMac8.chrX                     90358 8 + 149150640 I

a score=23055.000000
s hg38.chrX_KI270880v1_alt         28499 17 +    284869 AGGAGAGGCAGCTGCAG
s panPan2.chrUn_NW_014024225v1     63893 17 +    105888 AGGAGAGGCAGCTGCAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97567 17 +    417917 AGGAGAGGCAGCTGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678250 17 - 171882078 AGGAGAGGCAGCTGCAG
i macFas5.chr7                 I 26 C 0
s saiBol1.JH378345                112093 17 +    465904 AGGAGGGGCAGCTGCAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          177818 17 -    735872 AGGAGAGGCAGCTGCAG
i cebCap1.NW_016107987v1       C 0 I 462
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362  0 -    811265 C
e cerAty1.NW_012001098v1           97279  0 -   1025902 C
e colAng1.NW_012115411v1          164013  0 +   1230721 C
e rheMac8.chrX                     90358  8 + 149150640 I
e macNem1.NW_012017243v1          134426  0 +  25972781 C

a score=3533.000000
s hg38.chrX_KI270880v1_alt         28516 6 +    284869 ACACAG
s panPan2.chrUn_NW_014024225v1     63910 6 +    105888 ACACAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97584 6 +    417917 ACACAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678267 6 - 171882078 ACCCGG
i macFas5.chr7                 C 0 C 0
s saiBol1.JH378345                112110 6 +    465904 GCCCAG
i saiBol1.JH378345             C 0 I 922
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362 0 -    811265 C
e cerAty1.NW_012001098v1           97279 0 -   1025902 C
e colAng1.NW_012115411v1          164013 0 +   1230721 C
e rheMac8.chrX                     90358 8 + 149150640 I
e macNem1.NW_012017243v1          134426 0 +  25972781 C

a score=1212.000000
s hg38.chrX_KI270880v1_alt         28522 26 +    284869 AGCGGCGAGTGC-GAAGGAGAGGCAGC
s panPan2.chrUn_NW_014024225v1     63916 27 +    105888 AGCGGGGAGTGCGGGAGGAGAGGCAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97590 12 +    417917 AGCGGGGAGTGC---------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678273 26 - 171882078 GACGCCCTGAGA-GAAGAAGGGTCTGC
i macFas5.chr7                 C 0 T 75
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e saiBol1.JH378345                112116 922 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362  0 -    811265 C
e cerAty1.NW_012001098v1           97279  0 -   1025902 C
e colAng1.NW_012115411v1          164013  0 +   1230721 C
e rheMac8.chrX                     90358  8 + 149150640 I
e macNem1.NW_012017243v1          134426  0 +  25972781 C

a score=-1573.000000
s hg38.chrX_KI270880v1_alt         28548 2 +    284869 -TG
s panPan2.chrUn_NW_014024225v1     63943 2 +    105888 -TG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s macFas5.chr7                 171678224 2 - 171882078 CC-
i macFas5.chr7                 T 75 C 0
s macNem1.NW_012017243v1          134426 2 +  25972781 CC-
i macNem1.NW_012017243v1       C 0 C 0
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e saiBol1.JH378345                112116 922 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83362 0 -    811265 C
e cerAty1.NW_012001098v1           97279 0 -   1025902 C
e colAng1.NW_012115411v1          164013 0 +   1230721 C
e rheMac8.chrX                     90358 8 + 149150640 I
e gorGor5.CYUI01015925v1           97602 0 +    417917 C

a score=144599.000000
s hg38.chrX_KI270880v1_alt         28550 64 +    284869 CAGACACAGAGCTGGGAGTGCGGAAGGAGAGGCAGCTGCAGACCC-GCAGGCCCTGAG---AGAAGGG
s panPan2.chrUn_NW_014024225v1     63945 64 +    105888 CAGACACAGAGCGGGGAGTGCGGGAGGAGAGGCAGCTGCAGACCC-GCAGGCCCTGAG---AGAAGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97602 43 +    417917 ---------------------GGAAGGAGAAGCAGCTGCAGAGCC-GCAGGCCCTGAG---AGAAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90366 68 + 149150640 CAGACACGGAGCGGGGAGTGGGGGAGGAGAGGCAGCTGCAGACCCGGGACGCCCTGAGAGAAGAAGGG
i rheMac8.chrX                 I 8 C 0
s macFas5.chr7                 171678226 68 - 171882078 CAGACACGGAGCGGGGAGTGGGGGAGGAGAGGCAGCTGCAGACCCGGGACGCCCTGAGAGAAGAAGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134428 68 +  25972781 CAGACACGGAGCGGGGAGTGGGGGAGGAGAGGCAGCTGCAGACCCGGGACGCCCTGAGAGAAGAAGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97279 60 -   1025902 --------GAGCGAGGAGTGGGGAAGGAGAGGCAGCTGCAGACCCGGGAGGCCCTGAGAGAAGAAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83362 56 -    811265 --------GAGCGGGCAGTGGGGAA-GAGAGGCAGCTGCAGACCCGGGAGGCCCGGAG---AGAAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164013 60 +   1230721 --------GAGCGGGGAGTGGGGAAGGAGAGGCAGCTGCAGACCCGGGAGGCCCTGAGAGAAGAAGGG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e saiBol1.JH378345                112116 922 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=3195.000000
s hg38.chrX_KI270880v1_alt         28614 2 +    284869 TG
s panPan2.chrUn_NW_014024225v1     64009 2 +    105888 TG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97645 2 +    417917 TG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90434 2 + 149150640 TC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678294 2 - 171882078 TC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134496 2 +  25972781 TC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97339 2 -   1025902 TC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83418 2 -    811265 TC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164073 2 +   1230721 TC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                113038 2 +    465904 TG
i saiBol1.JH378345             I 922 C 0
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 75473 2030 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=3785.000000
s hg38.chrX_KI270880v1_alt         28616 1 +    284869 T
s panPan2.chrUn_NW_014024225v1     64011 1 +    105888 T
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           97647 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90436 1 + 149150640 T
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678296 1 - 171882078 T
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134498 1 +  25972781 T
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97341 1 -   1025902 T
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83420 1 -    811265 T
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164075 1 +   1230721 T
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                113040 1 +    465904 C
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 77503 1 +  11138919 T
i otoGar3.GL873584             I 2030 C 0
e cebCap1.NW_016107987v1          177835 462 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=1091538.000000
s hg38.chrX_KI270880v1_alt         28617 201 +    284869 GCTCGGTGT---CCGCGCGGCCCGCCCGCCCCTGTGCCCCCACGCACCGTGGTCATTGTGCCGCGCCAGGTCGTCCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCCGAACTTGCAGTAGATGACGTAGAAATGCTCGTACGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
s panPan2.chrUn_NW_014024225v1     64012 201 +    105888 GCTCGGTGT---CCGCGCGGCCCGCCCGCCACTGTGCCCCCGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTCCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAATGCTCGTACGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i panPan2.chrUn_NW_014024225v1 C 0 M 243
s gorGor5.CYUI01015925v1           97648 200 +    417917 GCTCGGTGT---CCCCGCGCCCCGCCCGCCCCTGTG-CCCCGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTCCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAATGCTCGTACGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90437 201 + 149150640 GCTCGGTGT---CCCCGCGCCGCGCCCGCCCCTCTGCCCCTGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAGTGCTCGTAGGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678297 201 - 171882078 GCTCGGTGT---CCCCGCGCCGCGCCCGCCCCTCTGCCCCTGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAGTGCTCGTAGGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134499 198 +  25972781 GCTCGGTGT---CCCCGCGCCGCGCCCGCCCCTCTGCCCCTGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAGTGCTCGTAGGAGAAGAATTCGGTCAGCTGGTTGATGTCCG---CCTCCTCCAGCAGCGCCACATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97342 200 -   1025902 GCTCGGTGT---CCCCGCGCCCCGCCCGCCCCTCTGCCCC-GCTCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTACAGTAGATGACGTAGAAGTGCTCGTAGGAGAAGAACTCAGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83421 201 -    811265 GCTCGGAGT---CCCCGCGCCCCGCCCGCCCCTCTGTCCCTGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACGTAGAAGTGCTCGTAGGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164076 201 +   1230721 GCTGGGTGT---CCCCACGCCCCGCCCGCCCCTCTGCCCCTGCGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAGATGACATAGAAGTGCTCGTAGGAGAAGAATTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCCACGTT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                113041 200 +    465904 GCTCTGTGT---CCCCGCGCCCCGCCCGCCCCTCCGTGCC-ACGCACCGTGGTCATTGTGCCGGGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGAGTCCAGCTCCCAGAACTTGCAGTAAATGACATAGAAGTGCTCGTAGGAGAAGAACTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCTACGTT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          178297 200 -    735872 GCTCGGTAT---CCCCGCGCCCCGCCTGCCGCTCTGCCGC-ACGCACCGTGGTCATTGTGCCGCGCCAGGTCGTGCGCGTCGATGAGCAGGTCGTGGTCCGTGTCCAGCTCCCAGAACTTGCAGTAAATGACGTAGAAGTGCTCGTAGGAGAAGAACTCGGTCAGCTGGTTGATGTCCGCCTCCTCCTCCAGCAGCGCTACGTT
i cebCap1.NW_016107987v1       I 462 C 0
s otoGar3.GL873584                 77504 204 +  11138919 GCCCCGTGCTCACCCTGCCTCATGCTCACACCACCCCACGCACTCACCATGATCGTTGTGTCGGGCCAGGTCCTGTGCGTCAATAAGCAGGTCATGGTCTGTGTCCAGCTCCCAAAACTTGCAGTAGATGACATAGAAGTGCTCGTATGAGAAGTACTCAGTCAGCTGATTGATGTCTGCTTCCTCCTCCAGGAGTGCCACATT
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=54587.000000
s hg38.chrX_KI270880v1_alt         28818 12 +    284869 CTGCCAA-AGGAC
s gorGor5.CYUI01015925v1           97848 12 +    417917 CTGCCAA-AGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90638 12 + 149150640 CTGCCAA-AGGAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678498 12 - 171882078 CTGCCAA-AGGAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134697 12 +  25972781 CTGCCAA-AGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97542 12 -   1025902 CTGCCAA-ACGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83622 12 -    811265 CTGCCAA-AGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164277 12 +   1230721 CTGCCAA-AGGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                113241 12 +    465904 CTGCCGA-AGGAC
i saiBol1.JH378345             C 0 I 4
s cebCap1.NW_016107987v1          178497 12 -    735872 CTGCCAA-AGGAC
i cebCap1.NW_016107987v1       C 0 I 93
s otoGar3.GL873584                 77708 13 +  11138919 CTGCCAACAAGAC
i otoGar3.GL873584             C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=102882.000000
s hg38.chrX_KI270880v1_alt         28830 33 +    284869 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGCGGGGA
s gorGor5.CYUI01015925v1           97860 33 +    417917 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGCGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90650 33 + 149150640 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678510 33 - 171882078 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134709 33 +  25972781 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97554 33 -   1025902 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83634 33 -    811265 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164289 33 +   1230721 --------------CCAGGCGGCCTGAGCGCGGGGCCTCTGGGGGGA
i colAng1.NW_012115411v1       C 0 I 61
s saiBol1.JH378345                113257 33 +    465904 --------------TGGGGGGGCCTGAGTATGGGGCCTCCGAGGCGA
i saiBol1.JH378345             I 4 C 0
s otoGar3.GL873584                 77721 44 +  11138919 CCGAAGGCACTGCCATAGACAGCCTCTGT---GGGCCCCTGTGGTGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          178509 93 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=29126.000000
s hg38.chrX_KI270880v1_alt         28863 17 +    284869 ---TGCCCCAAGTCCGCCTG
s gorGor5.CYUI01015925v1           97893 17 +    417917 ---CGCCCCAAGTCCGCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90683 17 + 149150640 ---CGCCCCAAGTCCGGGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678543 17 - 171882078 ---CGCCCCAAGTCCGGGTG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134742 17 +  25972781 ---CGCCCCAAGTCCGGGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97587 17 -   1025902 ---CGCCCCAAGTCCGGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83667 16 -    811265 ---CGCCCTAA-TCcggggg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                113290 17 +    465904 ---CGCCTCAAGGCCGGGTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 77765 20 +  11138919 GACAGACCCCAGCAGGCCTG
i otoGar3.GL873584             C 0 I 53
e cebCap1.NW_016107987v1          178509 93 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164322 61 +   1230721 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=49550.000000
s hg38.chrX_KI270880v1_alt         28880 23 +    284869 GCTGCGGGC-GGGGCAGGGAAGGC
s gorGor5.CYUI01015925v1           97910 23 +    417917 GCTgcgggc-ggggcagggaaggc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90700 24 + 149150640 GCTGCGGGCGGGGGCAGGGAAGGC
i rheMac8.chrX                 C 0 I 7
s macFas5.chr7                 171678560 24 - 171882078 GCTGCGGGCGGGGGCAGGGAAGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134759 24 +  25972781 GCTGCGGGCGGGGGCAGGGAAGGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97604 24 -   1025902 GCTGCGGGCGGGGGCAGGGAAGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83683 24 -    811265 gctgcgggcgggggcagggaaggc
i chlSab2.chrUn_KE147541v1     C 0 I 47
s saiBol1.JH378345                113307 20 +    465904 CCTGCGGGCAGG----CGGAAGGC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178509 93 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164322 61 +   1230721 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=-821.000000
s hg38.chrX_KI270880v1_alt         28903 15 +    284869 TGGGAGGGTCGGGGC
s gorGor5.CYUI01015925v1           97933 14 +    417917 tgggcggg-cggggc
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                113327  2 +    465904 TG-------------
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178509 93 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e cerAty1.NW_012001098v1           97628  0 -   1025902 C
e colAng1.NW_012115411v1          164322 61 +   1230721 I
e rheMac8.chrX                     90724  7 + 149150640 I
e macNem1.NW_012017243v1          134783  0 +  25972781 C
e macFas5.chr7                 171678584  0 - 171882078 C
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=-7356.000000
s hg38.chrX_KI270880v1_alt         28918 44 +    284869 CGCTCCGTGGGTGGGGGGGACTGGGCAGC------TGGGGCCGGGGGGCA
s gorGor5.CYUI01015925v1           97947 43 +    417917 cgctccatgggtgggggggactgggcagc------tggggccggggA-CA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678584  7 - 171882078 ------------------------------------GGGGTCG-------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134783  7 +  25972781 ------------------------------------AGGGTCG-------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97628  7 -   1025902 ------------------------------------GGGGTCG-------
i cerAty1.NW_012001098v1       C 0 C 0
s saiBol1.JH378345                113329 18 +    465904 --------GGGCGGAGGG-----------------CGGGGGTG-------
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          178602 43 -    735872 CGCTCCGTGGGTGGTGGGGACTGGGCAGCTGTGGTGGGGGGTG-------
i cebCap1.NW_016107987v1       I 93 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164322 61 +   1230721 I
e rheMac8.chrX                     90724  7 + 149150640 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=91350.000000
s hg38.chrX_KI270880v1_alt         28962 35 +    284869 CTCCGAGTGGGGGCAACTCTGCGGTGGGGGGAGCT
s gorGor5.CYUI01015925v1           97990 35 +    417917 CTCCGAGTGGGGGCAACTCTGCGGTGGGGGGAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90731 35 + 149150640 CTCCGAGTGGGGGCAGCTCTGCGGTGGGGGGAGCT
i rheMac8.chrX                 I 7 C 0
s macFas5.chr7                 171678591 35 - 171882078 CTCCGAGTGGGGGCAGCTCTGCGGTGGGGGGAGCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134790 35 +  25972781 CTCCGAGTGGGGGCAGCTCTGCGGTGGGGGGAGCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97635 35 -   1025902 CTCCGAGTTGGGGCAGCTCTGCGGTGGGGGGAGCT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          164383 35 +   1230721 CTCCGAGTGGGGGCAGCTCTGCGGTGGGGGAAGCT
i colAng1.NW_012115411v1       I 61 M 219
s saiBol1.JH378345                113347 34 +    465904 TTCCCAGTGGGGGCGATCCCA-GGTTGGGGGAGCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          178645 33 -    735872 CTCCCAGTGGGGGCAATTCCA-GGTT-GGGGAGCT
i cebCap1.NW_016107987v1       C 0 C 0
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=84336.000000
s hg38.chrX_KI270880v1_alt         28997 38 +    284869 CCAGCATGGGGGTGGCTCCCTAGGCGGGTGTGGGGGTG
s gorGor5.CYUI01015925v1           98025 38 +    417917 CCAGCATGGGGGCGGCTCCCTAGGCGGGCGTGGGGGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90766 38 + 149150640 CCAGCACGGGGGCGGCTCCCTAGGCGGGCGTGGCGGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171678626 38 - 171882078 CCAGCGCGGGGGCGGCTCCCTAGGCGGGCGTGGGGGTG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          134825 38 +  25972781 CCAGCACGGGGGCGGCTCCCTAGGCGGGCGTGGGGGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           97670 38 -   1025902 CCAGCATGGGGGCGGCTCCCTAGACGGGCGTGGGGATG
i cerAty1.NW_012001098v1       C 0 C 0
s saiBol1.JH378345                113381 38 +    465904 CCGGCGTGGAGACAGCTTGCTAGGCGGGAGTGGGGGTG
i saiBol1.JH378345             C 0 I 140
s cebCap1.NW_016107987v1          178678 38 -    735872 CCAGCATGGAGGCAGCTTGCTAGGCGGGAGTGGGGGTG
i cebCap1.NW_016107987v1       C 0 I 3798
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=6000.000000
s hg38.chrX_KI270880v1_alt         29035 4 +    284869 GGGG
s gorGor5.CYUI01015925v1           98063 4 +    417917 GGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     90804 4 + 149150640 GGGG
i rheMac8.chrX                 C 0 I 216
s macFas5.chr7                 171678664 4 - 171882078 GGGG
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          134863 4 +  25972781 GGGG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           97708 4 -   1025902 GGGG
i cerAty1.NW_012001098v1       C 0 I 1
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                113419 140 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=94226.000000
s hg38.chrX_KI270880v1_alt         29039 140 +    284869 CAGCTCTGGGGGAGTCAGGGCTCGGCTCCCCCTCAGGGTGGTGCCCAGTACGGCCCCACCCGCCTCCTAGATCAACCGTGGACCCCCAACCGCAGGCGGCGGGGTTCCAGTGCTCACAGGCCTgggggtgggctgggagc
s gorGor5.CYUI01015925v1           98067 140 +    417917 CCGCTCTGGGGGAGTCAGGGCTCCGCTCCCCCTCAGGGTGGTGCCCAGTACGGCCCCACCCGCCTCCTAGATCAACCGTGGACCCCCAACCGCAGGCGGCGCGGTTTCAGTGCTCACAGGCCTGggggtgggctgggagc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678669 122 - 171882078 CAGCTCTCAGGGAATGAGGGCTCGGCTCTCCC------TGGTGCCCAGTACGG-CCCCCCCACTTCGCAGATCAACCATGGACCCCCAAGTGCAGGCGGC-----------GCTCACAGGCCTGGGGGTGGGCAGGGAGC
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          134868 123 +  25972781 CAGCTCTCAGGGAATGAGGGCTCGGCTCTCCC------TGGTGCCCAGTACGGCCCCCCCCACTTCGCAGATCAACCATGGACCCCCAAGTGCAGGCGGC-----------GCTCACAGGCCTGggggtgggcagggagc
i macNem1.NW_012017243v1       I 1 I 104
s cerAty1.NW_012001098v1           97713 134 -   1025902 CAGCTCTCCGGGAATCAGGGCTCGGCTCCCCC------TGGGGCCCCGTACGGCCCCCCCCACTTCGCAGATCAACCATGGACCCCCAACTGCAGGCGGCGCGGTGTCGGTGCTCACAGGCCTGggggtgggcagggagc
i cerAty1.NW_012001098v1       I 1 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                113419 140 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785  53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707  47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=1867.000000
s hg38.chrX_KI270880v1_alt         29179 4 +    284869 gcgg
s gorGor5.CYUI01015925v1           98207 4 +    417917 gcgg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171678791 4 - 171882078 GTGG
i macFas5.chr7                 C 0 M 287
s cerAty1.NW_012001098v1           97847 4 -   1025902 gtgg
i cerAty1.NW_012001098v1       C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                113419 140 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=1932.000000
s hg38.chrX_KI270880v1_alt         29183 17 +    284869 tggaggtgggggtgggg
s gorGor5.CYUI01015925v1           98211 12 +    417917 tggaggtggggt-----
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1           97851 17 -   1025902 gggaggtggggatgggg
i cerAty1.NW_012001098v1       C 0 I 119
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                113419 140 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=601.000000
s hg38.chrX_KI270880v1_alt         29200 10 +    284869 gtgggggtgg
s gorGor5.CYUI01015925v1           98223  7 +    417917 ---ggggtgg
i gorGor5.CYUI01015925v1       C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                113419 140 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e cerAty1.NW_012001098v1           97868 119 -   1025902 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=6597.000000
s hg38.chrX_KI270880v1_alt         29210  99 +    284869 -------------gagagggggtgggagggg-------------aggagggaggggggaggagggaagggaagggagtggaggtaggaggg-------gtagggacaaggcagggggcagg-----ggaCAGGGGGC---------
s gorGor5.CYUI01015925v1           98230  85 +    417917 -------------gagtggggggcaggggga-------------aggagggagagggcgg------agggaagggagtggaggtaggaggg-------gtagg-acaaggcagggg------------aCAGGGGGC---------
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                113559 146 +    465904 gggaggggacggggagaggggagaaagggagggcagaggaaaacaggaggcgaggggcggggaggcaaaggagggggaggaaggaggagggaggcgaagggggagcaggggagggggaggggaggaggaaagggggagcaggggag
i saiBol1.JH378345             I 140 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785  53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707  47 -    811265 I
e cerAty1.NW_012001098v1           97868 119 -   1025902 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=-1680.000000
s hg38.chrX_KI270880v1_alt         29309  2 +    284869 --------------------------------CG
s gorGor5.CYUI01015925v1           98315  2 +    417917 --------------------------------CG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1           97987  2 -   1025902 --------------------------------CG
i cerAty1.NW_012001098v1       I 119 C 0
s saiBol1.JH378345                113705 34 +    465904 CGGGCCCGGAGGGGAGGAGGAAGGGAACGGCCCG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77785 53 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=-336.000000
s hg38.chrX_KI270880v1_alt         29311 3 +    284869 CTC
s gorGor5.CYUI01015925v1           98317 3 +    417917 CTC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1           97989 3 -   1025902 CTC
i cerAty1.NW_012001098v1       C 0 C 0
s saiBol1.JH378345                113739 1 +    465904 C--
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 77838 3 +  11138919 CTA
i otoGar3.GL873584             I 53 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         83707 47 -    811265 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=6240.000000
s hg38.chrX_KI270880v1_alt         29314 5 +    284869 CGCAC
s gorGor5.CYUI01015925v1           98320 5 +    417917 CGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1           97992 5 -   1025902 CGCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83754 5 -    811265 CGCAC
i chlSab2.chrUn_KE147541v1     I 47 C 0
s saiBol1.JH378345                113740 5 +    465904 CGCAC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 77841 5 +  11138919 CCCAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e rheMac8.chrX                     90808 216 + 149150640 I
e macNem1.NW_012017243v1          134991 104 +  25972781 I
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=256943.000000
s hg38.chrX_KI270880v1_alt         29319 146 +    284869 CTGCAGGAAGG-AGCTCCTCCGCA-GCTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGCGTAGAAGATCCGCTGGATGACCTGCG---GG-----GGCGCTGTCAGTGC------------GGTGGGTGCGCAGAGACCCCCAGGAGCCTCGCCCCGCA
s gorGor5.CYUI01015925v1           98325 144 +    417917 CTGCAGGAAGG-AGCTCCTCCGCA-GCTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGCGTAGAAGATCCGCTGGATGACCTGCG---GG-----GGCGCCGTCAGTGC------------GGTGGGTGCGCAGA--CCCCCAGGAGCCTCGCCCCGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91024 142 + 149150640 CTGCAGGAAGG-AGCTCCTCCGCA-GCTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGTGTAGAAGATCCGCTGGATGACCTGCG---GG-----GGCGCCGTCAGTGC------------GCTGGGTGCGCGAA--CCCCC--GAGCCTCGCCCCGCA
i rheMac8.chrX                 I 216 C 0
s macNem1.NW_012017243v1          135095 148 +  25972781 CTGCAGGAAGGAAGCTCCTCCGCAGGCTCGGCGGGCAGGTGATCCCTGCCGACCAGTCGGACCGGCTTCACGTGTAGAAGA-ACGCTGGATGACCTGCGGGAGG-----GGCCGCGTCAGTGC------------GCCTGGCGCGCGA-----CCC--GAGCCTCGCCCCGCA
i macNem1.NW_012017243v1       I 104 C 0
s cerAty1.NW_012001098v1           97997 143 -   1025902 CTGCAGGAAGG-AGCTCCTCCGCA-GCTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGTGTAGAAGATCCGCTGGATGACCTGCG---GG-----GGCGCCGTCAGTGC------------GCTGGGTGCGCAGA--CCCCC-GGAGCCTCGCCCCGCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83759 144 -    811265 CTGCAGGAAGG-AGCTCCTCCGCA-GTTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGTGTAGAAGATCCGCTGGATGACCTGCG---GG-----GGCGCCGTCAGTGC------------GCTGGGTGCGCGGA--CCCCCCGGAGCCTCGCCCCGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                113745 147 +    465904 CTGCAGGAAGG-AGCTCCGCCGCA-GCTCGGC--GCAGGTGATCCTGCCGGACCA---GGACCGGTTCACGGCGTAGAAGATGCGCTGGGTGACCTGCG---GGGTGCCGGTGCCGTCAGTGC------------CCTGGGTGTGCGGA----CGGAGGAGCTTCGCCCCTCG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 77846 151 +  11138919 CTGCAGGAAGC-TGCTCCTCCGGA-GCTCAGC--ACAGGTGATTCTCCCTGACCA---GGACCTGTTGACGGTGTAGAAGATCCTCTGGATGACCTGTG---GG-----AGGGCTGTGTAAGCAGCTGTGGGGTAGATGGGTGGGTGGA-------GGGGGCCCCCCACTGCA
i otoGar3.GL873584             C 0 I 1056
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=37308.000000
s hg38.chrX_KI270880v1_alt         29465 32 +    284869 CGGAGACCGGGAGCC-------GGGAGAGGGGCGCGCCC
s gorGor5.CYUI01015925v1           98469 32 +    417917 CGGAGACCGGGAGCC-------GGGAGAGGGGCGCGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91166 32 + 149150640 CGGAGA-CCGGCGCC------GGGGAGTGGGGCGCGGCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          135243 33 +  25972781 GGGAGACCCGGCGCC------GGGGAGAGGGGCGCGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98140 33 -   1025902 CGGAGACCCGGAGCC------AGGGAGAGGGGCGCGGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83903 33 -    811265 CGGAGACCCGGAGCC------GGGGAGAGGGGCGCGGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                113892 39 +    465904 CAGAGACGGGGACGCGGAAGGGGGGAGACGAGCATCACC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e macFas5.chr7                 171678795 287 - 171882078 M
e panPan2.chrUn_NW_014024225v1     64213 243 +    105888 M

a score=107749.000000
s hg38.chrX_KI270880v1_alt         29497 56 +    284869 TTGGTCTCAGCCGCACGGGGCC-GCCAGGGC---ACAGGCGGGGG-----CAGAGGGAAGGGCCC
s panPan2.chrUn_NW_014024225v1     64456 57 +    105888 TTGGTCTCAGCCGCACGGGGCCCGCCAGGGC---ACAGGCGGGGG-----CAGCGGGAAGGGCCC
i panPan2.chrUn_NW_014024225v1 M 243 C 0
s gorGor5.CYUI01015925v1           98501 56 +    417917 TTGGTCTCAGCCGCACGGGTCC-GCCAGGGC---ACAGGCGGGGG-----CAGCGGGAAGGGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91198 64 + 149150640 TTGGTCTCGGCCGCACCAGCCTCGCCAGGGCCGGACGGGCGGGGG-AGCGCGGCGGGAAGGGCCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          135276 65 +  25972781 TTGGTCTCAGCCGCACCAGGCTCGCCAGGGCCGGACGGGCGGGGGCAGCGCGGCGGGAAGGGCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98173 60 -   1025902 TTGGTCTCAGCCCCACCAGGCTCCCCAGGGTCGGACGGGCGGGGG-----CGGCGGGAAGGGCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83936 60 -    811265 TTCGTCTCAGCCGCACCAGGCTCGCCAGGGTCGGACGGGCGGGGG-----CGGCGGGAAGGGCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                113931 57 +    465904 TTGGTCTCAGCAGCCCCAGGCCCACGAGGGC---ACAGGCGGGGG-----CCGTGGGAAGGGCCC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164418 219 +   1230721 M
e macFas5.chr7                 171678795 287 - 171882078 M

a score=10476.000000
s hg38.chrX_KI270880v1_alt         29553 3 +    284869 TGC
s panPan2.chrUn_NW_014024225v1     64513 3 +    105888 TGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98557 3 +    417917 TGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91262 3 + 149150640 TGC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          135341 3 +  25972781 TGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98233 3 -   1025902 TGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83996 3 -    811265 TGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164637 3 +   1230721 TGC
i colAng1.NW_012115411v1       M 219 C 0
s saiBol1.JH378345                113988 3 +    465904 TGC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e macFas5.chr7                 171678795 287 - 171882078 M

a score=376541.000000
s hg38.chrX_KI270880v1_alt         29556 111 +    284869 GGGAGGCGCCGCCCCAGGCCGCGGAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCTACAC--GGGCCCAGGACAGGTGGG-AAGGGGGTGCGGCCACCCCGG-AAAACCA
s panPan2.chrUn_NW_014024225v1     64516 110 +    105888 GGGAGGCGCCACCCCAGGCCGCGGAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCTACAC--GGGCCCAGGACAGGTGGG-AAAGGGGCGCGGCCACCCCG--AAAACCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98560 111 +    417917 GGGAGGCGCCGCCCCAGGCCACGGAAAGCGGGGAGGGTCTGGCC-GGGACGCCC--CGGAGCTACAC--GGGCCCAGGACAGGTGGG-AAGGGGGCGCGGCCACCCCGGAAAAACCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91265 111 + 149150640 GGGAGGCGCCGCCCCAGGCCGCGCAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCTACGC--GGGCCCAGGACAGGTGGG-AAAGGGGCGCGGCCACCCCGG-AAAGCCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679084 111 - 171882078 GGGAGGCGCCGCCCCAGGCCGCGCAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCTACGC--GGGCCCAGGACAGGTGGG-AAAGGGGCGCGGCCACCCCGG-AAAGCCA
i macFas5.chr7                 M 287 C 0
s macNem1.NW_012017243v1          135344 111 +  25972781 GGGAGGCGCCGCCCCAGGGCGCGCAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCCACGC--GGGCCCAGGACAGGTGGG-AAAGGGGCGCGGCCACCCCGG-AAAGCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98236 111 -   1025902 GGGAGGCGCCGCCCCAGGCCGCGCAAAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAACTACGC--GGGCCCAGGACAGGTGGG-AAAGGAGCGCGGCCACCCCGG-AAAACCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         83999 110 -    811265 AGGAGGCGCCGCCCCAGGCCGCGGACAGCGGGGAGGGTCTGGCCGGGGACGCCC--CGGAGCTACGC--GGGCCCAGGACAGGCGGG-AAAGGGGCGCGGCCA-CCCGG-AAAACTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164640 115 +   1230721 GGGAGGCGCCGCCCCAGGCCGCGCAAAGCGGGGAGGGTCTGGCTGGGGACGCCCCGCGGAGCTACGCGGGGGCCCAAGACAGGTGGG-AAAGGGGCGCGGCCACCCCGG-AAAACCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                113991  95 +    465904 GGGAGGCACCACCCCAGGCTGCGC---TCAGGGAGGGTGTGGCCAGGGGTTCCC--C-------TGT---------GGACTGGTGGGCAAAGGAGCGTGGGCATCCCAG-AAAACCA
i saiBol1.JH378345             C 0 I 5352
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=86436.000000
s hg38.chrX_KI270880v1_alt         29667 29 +    284869 GAGTCCCCCCAACACCGGGCTCCCGGGCG
s panPan2.chrUn_NW_014024225v1     64626 29 +    105888 GAGTCCCCCCAACACTGGGCTCCCGGGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98671 27 +    417917 GAGTCCCCCCAACACCGGGCTCCCGG--A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91376 29 + 149150640 GAGTCCCCCCAACGCCGGGCTCCCGGGCA
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171679195 29 - 171882078 GAGTCCCCCCAACGCCGGGCTCCCGGGCA
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          135455 29 +  25972781 GAGTCCCCCCAACGCCGGGCTCCCGGGCA
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1           98347 29 -   1025902 GAGTCCCTCCAACGCCGGGCTCCCGGGCA
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1         84109 29 -    811265 GAGTCTCCCCAACGCCGGGCTCCCGGGCA
i chlSab2.chrUn_KE147541v1     C 0 I 1
s colAng1.NW_012115411v1          164755 29 +   1230721 GAGTGCCCCCATCGCCGGGCTCCCGGGCA
i colAng1.NW_012115411v1       C 0 I 48
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=87656.000000
s hg38.chrX_KI270880v1_alt         29696 48 +    284869 GGTGGAGACTCTCCCAGAGCGCGGCCGCCTCCTCCGGAAGCTCAGGAA
s panPan2.chrUn_NW_014024225v1     64655 48 +    105888 GGCGGAGACTCTCCCAGGGCGCGGCCGCCTCCTCCGGAAGATCAGGAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98698 47 +    417917 GGCGGAGACCCTCCCAGGGCGCGACCGCCTCCTCCGGAAGCTCAGGA-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91406 47 + 149150640 GGCAGACACGTTCCCAGGAAACAGCCGCCTCCTCCCGAAGCTCAAGA-
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171679225 47 - 171882078 GGCAGACACGTTCCCAGGAAACAGCCGCCTCCTCCCGAAACTCAAGA-
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          135485 47 +  25972781 GGCAGACACGTTCCCAGGAAACAGCCGCCTCCTCCCGAAGCTCAAGA-
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1           98377 47 -   1025902 GGCAGACCCGTTGCCAGGAAACAGCCGCCTCCTCCCGAAGCTCAAGA-
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1         84139 47 -    811265 GGCAGACACGTTCCCAGAAAACAGCTGCCTCCTCCGGAAGCTCAAGA-
i chlSab2.chrUn_KE147541v1     I 1 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e colAng1.NW_012115411v1          164784 48 +   1230721 I

a score=62384.000000
s hg38.chrX_KI270880v1_alt         29744 20 +    284869 CCCCGGGCCCCGCCCGCCCC
s panPan2.chrUn_NW_014024225v1     64703 20 +    105888 CCCCGGGCCCCGCCCGCCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98745 19 +    417917 CCCCGGGCCCCGCCCG-CCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91453 20 + 149150640 CCCCGGACCCCGCCCGCCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679272 20 - 171882078 CCCCGGACCCCGCCCGCCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135532 20 +  25972781 CCCCGGACCCCGCCCGCCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98424 20 -   1025902 CCCCGGACCCCGCCTGCCCC
i cerAty1.NW_012001098v1       C 0 I 32
s chlSab2.chrUn_KE147541v1         84186 19 -    811265 -CCCGGACCCCGCCTGCCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164832 20 +   1230721 CCCCGGACCCCGCCCGCCCC
i colAng1.NW_012115411v1       I 48 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt         29764 1 +    284869 G
s panPan2.chrUn_NW_014024225v1     64723 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 C 0 I 1
s gorGor5.CYUI01015925v1           98764 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91473 1 + 149150640 G
i rheMac8.chrX                 C 0 I 21
s macFas5.chr7                 171679292 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135552 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 I 21
s chlSab2.chrUn_KE147541v1         84205 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 I 32
s colAng1.NW_012115411v1          164852 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 I 31
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e cerAty1.NW_012001098v1           98444 32 -   1025902 I

a score=13187.000000
s hg38.chrX_KI270880v1_alt         29765 58 +    284869 TCCGCAGAAGCCCCGCGGCGGCCGCTGCAGAAACACCCGCGCCCCGCGCTGGAACCGA
s panPan2.chrUn_NW_014024225v1     64725 58 +    105888 TCCGCAGAAGCCCCGCGGCGACCGCTGCAGAAACACCCGCGCCCCGCGCTGGAACCGA
i panPan2.chrUn_NW_014024225v1 I 1 C 0
s gorGor5.CYUI01015925v1           98765 58 +    417917 TCCGCAGAAGCCCCGCGGCGGCCGCTGCAGAAACACCCGCGCCCCGCGCTGGAACCGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679293 21 - 171882078 -----------------------------GAACCGC-----CCCCGGGCTCACCC---
i macFas5.chr7                 C 0 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e chlSab2.chrUn_KE147541v1         84206 32 -    811265 I
e cerAty1.NW_012001098v1           98444 32 -   1025902 I
e colAng1.NW_012115411v1          164853 31 +   1230721 I
e rheMac8.chrX                     91474 21 + 149150640 I
e macNem1.NW_012017243v1          135553 21 +  25972781 I

a score=39568.000000
s hg38.chrX_KI270880v1_alt         29823 13 +    284869 CGGCCCCTCCGCT
s panPan2.chrUn_NW_014024225v1     64783 13 +    105888 CGGCCTCTCCGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98823 13 +    417917 CGGCCCCTCCGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91495 13 + 149150640 CGGCCCCTCCGCT
i rheMac8.chrX                 I 21 C 0
s macFas5.chr7                 171679314 13 - 171882078 CAGCCCCTCCGCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135574 13 +  25972781 CGGCCCCTCCGCT
i macNem1.NW_012017243v1       I 21 C 0
s cerAty1.NW_012001098v1           98476 13 -   1025902 CGGCCCCTCCCCT
i cerAty1.NW_012001098v1       I 32 C 0
s chlSab2.chrUn_KE147541v1         84238 13 -    811265 CGGCCCCTCCGCG
i chlSab2.chrUn_KE147541v1     I 32 C 0
s colAng1.NW_012115411v1          164884 13 +   1230721 CGGCCCCTCTGCT
i colAng1.NW_012115411v1       I 31 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 77997 1056 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=27891.000000
s hg38.chrX_KI270880v1_alt         29836 7 +    284869 GGGGACC
s panPan2.chrUn_NW_014024225v1     64796 7 +    105888 GGGGACC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           98836 7 +    417917 GGGGACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91508 7 + 149150640 GGGGACC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679327 7 - 171882078 GGGGACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135587 7 +  25972781 GGGGACC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98489 7 -   1025902 GGGGACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84251 7 -    811265 GGGGACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164897 7 +   1230721 GGGGACC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79053 7 +  11138919 GGGCACT
i otoGar3.GL873584             I 1056 C 0
e cebCap1.NW_016107987v1          178716 3798 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=424771.000000
s hg38.chrX_KI270880v1_alt         29843 86 +    284869 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
s panPan2.chrUn_NW_014024225v1     64803 86 +    105888 CACCGTGGTGATGTAGCGCGAGTGAAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i panPan2.chrUn_NW_014024225v1 C 0 M 1304
s gorGor5.CYUI01015925v1           98843 86 +    417917 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91515 86 + 149150640 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679334 86 - 171882078 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135594 86 +  25972781 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98496 86 -   1025902 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84258 86 -    811265 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164904 86 +   1230721 CACCGTGGTGATGTAGCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTGCGGGG
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          182514 86 -    735872 CACCGTGGTGATGTACCGCGAGTGGAACTCGGACGCCTCCTTCAGGAACGACAGCCCCGGGTGCGTGTTCACCACGTCCTAACGGA
i cebCap1.NW_016107987v1       I 3798 C 0
s otoGar3.GL873584                 79060 86 +  11138919 CACTGTGGTGATGTAGCGAGAGTGGAACTCAGATGCCTCCTTTAGGAAGGACAGGCCTGGGTGGGTGTTCACTACATCCTGTGGGC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I

a score=26838.000000
s hg38.chrX_KI270880v1_alt         29929 7 +    284869 GGGAAGA
s gorGor5.CYUI01015925v1           98929 7 +    417917 GGGAAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91601 7 + 149150640 GGGAAGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679420 7 - 171882078 GGGAAGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135680 7 +  25972781 GGGAAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98582 7 -   1025902 GGGAAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84344 7 -    811265 GGGAAGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164990 7 +   1230721 GGGAAGA
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          182600 7 -    735872 GGGAAGA
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 79146 6 +  11138919 -AGAGGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=1314.000000
s hg38.chrX_KI270880v1_alt         29936 1 +    284869 C
s gorGor5.CYUI01015925v1           98936 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1           98589 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84351 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164997 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          182607 1 -    735872 C
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 79152 1 +  11138919 T
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     91608 0 + 149150640 C
e macNem1.NW_012017243v1          135687 0 +  25972781 C
e macFas5.chr7                 171679427 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=5081.000000
s hg38.chrX_KI270880v1_alt         29937 3 +    284869 ACG
s gorGor5.CYUI01015925v1           98937 3 +    417917 ACG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679427 3 - 171882078 ATG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           98590 3 -   1025902 ATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84352 3 -    811265 ATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          164998 3 +   1230721 ATG
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          182608 3 -    735872 ACG
i cebCap1.NW_016107987v1       C 0 I 771
s otoGar3.GL873584                 79153 3 +  11138919 ACA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     91608 0 + 149150640 C
e macNem1.NW_012017243v1          135687 0 +  25972781 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=35305.000000
s hg38.chrX_KI270880v1_alt         29940 29 +    284869 AGGCGCGTGGTGTAGACGCCGGCCCTCCC
s gorGor5.CYUI01015925v1           98940 28 +    417917 AGGCGCGCGGTGTAGACGC-GGCCCTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679430 29 - 171882078 AGGCGTGCGGTGTAGACGCCGGCCCTCCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1           98593 29 -   1025902 AGGCGTGCGGTGTGGACGCCGGCCCTTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84355 29 -    811265 AGGCGTGCGGTGTGGACGCAGGCCCTCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165001 29 +   1230721 AGGCGTGCGGTGTGGACGCGGGCCCTCCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79156 29 +  11138919 GAGCTTTAGGGGCAGACTCTGCACTCACC
i otoGar3.GL873584             C 0 I 79
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     91608  0 + 149150640 C
e macNem1.NW_012017243v1          135687  0 +  25972781 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=-8996.000000
s hg38.chrX_KI270880v1_alt         29969 48 +    284869 GTGAGGTGTGCGGTGTGGACGCTGCAGACGCGGACCCTCCCGTGAGCG-
s gorGor5.CYUI01015925v1           98968 43 +    417917 GTGAGGGATGAGGCGTGTG---TGTAGACGCGGGCCCTCCCGTGAG---
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679459  7 - 171882078 GTGAG---------------------------GG---------------
i macFas5.chr7                 C 0 T 39
s cerAty1.NW_012001098v1           98622 31 -   1025902 GTGAACTGC--GGTGTGGA---CACC------GGCCCTCCCG-------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84384  7 -    811265 GTGAG---------------------------GG---------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165030 44 +   1230721 GTGAAGTGTGAGGTGTAGA---CGCCGGCCCTGGCCCTCCCGTGAC--G
i colAng1.NW_012115411v1       C 0 I 1
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panTro5.chrX                    128461 31669 + 155549662 I
e rheMac8.chrX                     91608  0 + 149150640 C
e macNem1.NW_012017243v1          135687  0 +  25972781 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=90063.000000
s hg38.chrX_KI270880v1_alt         30017 39 +    284869 ATGAGGTGTGCGGTGTAGACGCCGG------CCCTCCCGTGAGGG
s panTro5.chrX                    160130 39 + 155549662 atGAGGTGTGCGGTGTAGACGTGGG------CCGTCCTGTAAAGG
i panTro5.chrX                 I 31669 C 0
s gorGor5.CYUI01015925v1           99011 34 +    417917 -----GTGTGCGGTGTAGACGCGGG------CCCTCCCGTGAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91608 39 + 149150640 ATGAGGCATGCGGTGTAGACGCCGG------CCCCCCCGCGAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679427 39 - 171882078 ATGAGGCGTGCGGTGTAGACGCCGG------CCCTCCCGTGAGGG
i macFas5.chr7                 T 39 C 0
s macNem1.NW_012017243v1          135687 39 +  25972781 ATGAGGCGTGCGGTGTAGACGCCGG------CCCTCCCGTGAGGG
i macNem1.NW_012017243v1       C 0 T 39
s cerAty1.NW_012001098v1           98653 38 -   1025902 -TGAAGTGTGCGGTGTAGACACTGG------CCCTCCCGTGAGGG
i cerAty1.NW_012001098v1       C 0 I 38
s chlSab2.chrUn_KE147541v1         84391 32 -    811265 GTGAGGCGTGCGGTGTAGACGCCGG-------------GTGACAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165075 45 +   1230721 AGGAGGCGTGCGGTGTGGACGCCGGCCCTGGCCCTCCCGTGACGC
i colAng1.NW_012115411v1       I 1 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=86801.000000
s hg38.chrX_KI270880v1_alt         30056 37 +    284869 ATGAGGCGTATGGTGTAGACGCCGGCCCTCCCGTGAG
s panTro5.chrX                    160169 37 + 155549662 ATAAGGCATATGGTGTAGACGCCAGCCCTCCCGTGAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1           99045 37 +    417917 ATGAGGCGTGTGGTGTAGACGCGGGCCCTCCCGTGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91647 37 + 149150640 GTGAGGCGTGCAGTGTAGACGCCGGCCCCCCCGCGAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679466 37 - 171882078 GTGAGGCGTGCAGTGTAGACGCCGGCCCCCCCGCGAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135687 37 +  25972781 ATGAGGCGTGCGGTGTAGACGCCGGCCCTCCCGTGAG
i macNem1.NW_012017243v1       T 39 C 0
s cerAty1.NW_012001098v1           98729 37 -   1025902 GTGGAGTGTGCGGTGTAGACACCGGCCCTCCTGTGAC
i cerAty1.NW_012001098v1       I 38 C 0
s chlSab2.chrUn_KE147541v1         84423 32 -    811265 ATGAGGCGTGCGGTGTGGACGCTGGCCTTCCC-----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165120 32 +   1230721 AGGAGGCGTGCGGTGTGGACGCCGGCCCTCCC-----
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=85677.000000
s hg38.chrX_KI270880v1_alt         30093 45 +    284869 GGATGAGGCATGTGGTGTAGACGCGGGCCCTCCCGTGAGGTGTGC
s gorGor5.CYUI01015925v1           99082 38 +    417917 G-------CATGCGGTGTAGACGCAGGCCCTCCCATGAGGTGTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91684 45 + 149150640 GGGTGAGGCGTGCAGTGTAGACGCCGGCCCCCCCGCGGAGTGTGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679503 45 - 171882078 GGGTGAGGCGTGCAGTGTAGACGCCGGCCCCCCCGCGGAGTGTGC
i macFas5.chr7                 C 0 I 32
s macNem1.NW_012017243v1          135724 45 +  25972781 GGGTGAGGCGTGCAGTGTAGACGCCGGCCCTCCCGTGGAGTGTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98766 45 -   1025902 GCGTGAGGCGTGCGGTGTGGACGCCGGCCCTCCTGCGAGGTGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84455 43 -    811265 --GTGAAGTGTGCGGTGTAGACACCGGCCCTCCAGTGAAGTGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165152 43 +   1230721 --GTGAAGTGTGCGGTGTAGACACTGGCCCTCCCGTGAAGTGTGC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=47558.000000
s hg38.chrX_KI270880v1_alt         30138 24 +    284869 AGTGTAGACGCGGACCCTCCCGTG
s gorGor5.CYUI01015925v1           99120 24 +    417917 GGTGTAGACGCGGGCCCTCCCGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91729 24 + 149150640 GGTGTAGACACCCGCCCTCCTGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679580 23 - 171882078 GGTGTAGACACCGGCCC-CCCGTG
i macFas5.chr7                 I 32 C 0
s macNem1.NW_012017243v1          135769 24 +  25972781 AGTGTAGACGCCGGCCCTCCCGTG
i macNem1.NW_012017243v1       C 0 T 106
s cerAty1.NW_012001098v1           98811 24 -   1025902 AGTGTAGACACCGGCCCTCCCGCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84498 24 -    811265 GGTGTAGACACCGGCCCTCCCGCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165195 24 +   1230721 GGTGTGGACGCCGGCCGTCCCGCG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=-2914.000000
s hg38.chrX_KI270880v1_alt         30162 4 +    284869 AGCG
s gorGor5.CYUI01015925v1           99144 4 +    417917 AGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91753 1 + 149150640 A---
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171679603 1 - 171882078 A---
i macFas5.chr7                 C 0 I 3
s cerAty1.NW_012001098v1           98835 1 -   1025902 A---
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1         84522 1 -    811265 A---
i chlSab2.chrUn_KE147541v1     C 0 I 3
s colAng1.NW_012115411v1          165219 1 +   1230721 A---
i colAng1.NW_012115411v1       C 0 I 1
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panTro5.chrX                    160206 0 + 155549662 C
e macNem1.NW_012017243v1          135793 106 +  25972781 T
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=294.000000
s hg38.chrX_KI270880v1_alt         30166 1 +    284869 A
s gorGor5.CYUI01015925v1           99148 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679607 1 - 171882078 G
i macFas5.chr7                 I 3 C 0
s macNem1.NW_012017243v1          135687 1 +  25972781 A
i macNem1.NW_012017243v1       T 106 C 0
s cerAty1.NW_012001098v1           98839 1 -   1025902 G
i cerAty1.NW_012001098v1       I 3 C 0
s chlSab2.chrUn_KE147541v1         84526 1 -    811265 G
i chlSab2.chrUn_KE147541v1     I 3 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79185 79 +  11138919 I
e panTro5.chrX                    160206 0 + 155549662 C
e colAng1.NW_012115411v1          165220 1 +   1230721 I
e rheMac8.chrX                     91754 1 + 149150640 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=42603.000000
s hg38.chrX_KI270880v1_alt         30167 20 +    284869 TGAGGTGTGCGGTGTAGACG
s gorGor5.CYUI01015925v1           99149 20 +    417917 TGAGGCGTGTGGTGTAGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91755 16 + 149150640 ----GTGTGCGGTGTAGACA
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171679608 20 - 171882078 TGAGGCGTGCCGTGTAGACA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135688 20 +  25972781 TGAGGCGTGCGGTGTAGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98840 20 -   1025902 TGAGGCGTGCGGTGTAGACG
i cerAty1.NW_012001098v1       C 0 I 108
s chlSab2.chrUn_KE147541v1         84527 20 -    811265 TGAGGCGTGCGGTGTGGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165221 16 +   1230721 ----GTGTGCGGTGTAGACA
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584                 79264 19 +  11138919 TGAGGCAGGAGATGCAGGC-
i otoGar3.GL873584             I 79 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=11364.000000
s hg38.chrX_KI270880v1_alt         30187 8 +    284869 CGGACCCT
s gorGor5.CYUI01015925v1           99169 7 +    417917 CCGGCCC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91771 8 + 149150640 CCGGCCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679628 8 - 171882078 CCGGCTCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135708 8 +  25972781 CCGGCCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98968 8 -   1025902 CGGGCCCC
i cerAty1.NW_012001098v1       I 108 C 0
s chlSab2.chrUn_KE147541v1         84547 8 -    811265 CCGGCCCT
i chlSab2.chrUn_KE147541v1     C 0 I 10
s colAng1.NW_012115411v1          165237 8 +   1230721 CTGGCCCT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79283 4 +  11138919 ----CTCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206 0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=5068.000000
s hg38.chrX_KI270880v1_alt         30195 11 +    284869 CCCATGAGGGA
s gorGor5.CYUI01015925v1           99176  4 +    417917 --CTTG-----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91779 11 + 149150640 CCCGCGAAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679636 11 - 171882078 CACCTGCAGGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135716 11 +  25972781 CCCGTGAGGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98976 11 -   1025902 CCTGCGAGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          165245 11 +   1230721 CCCGTGAGGGC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79287 10 +  11138919 CCTGTGAGGA-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206  0 + 155549662 C
e chlSab2.chrUn_KE147541v1         84555 10 -    811265 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=11550.000000
s hg38.chrX_KI270880v1_alt         30206 5 +    284869 TGAGG
s gorGor5.CYUI01015925v1           99180 5 +    417917 TGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91790 5 + 149150640 TGAGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679647 5 - 171882078 AGGGG
i macFas5.chr7                 C 0 T 141
s macNem1.NW_012017243v1          135727 5 +  25972781 TGAGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           98987 5 -   1025902 TGAGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84565 5 -    811265 TGGAG
i chlSab2.chrUn_KE147541v1     I 10 C 0
s colAng1.NW_012115411v1          165256 5 +   1230721 TGAGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79297 5 +  11138919 GGAGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206 0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=54177.000000
s hg38.chrX_KI270880v1_alt         30211 26 +    284869 CATGTGGTGTAGACGCG------GGCCCTCCC
s gorGor5.CYUI01015925v1           99185 26 +    417917 CGTGTGGTGTAGACGCG------GGCCCTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91795 26 + 149150640 CATGCAGTGTAGACGCC------GACCCTCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679511 26 - 171882078 CGTGCAGTGTAGACGCC------GGCCCCCCC
i macFas5.chr7                 T 141 C 0
s macNem1.NW_012017243v1          135732 26 +  25972781 CGTGCAGTGTAGACGCC------GGCCCTCCC
i macNem1.NW_012017243v1       C 0 T 71
s cerAty1.NW_012001098v1           98992 26 -   1025902 CGTGCGGTGTAGACACG------GGCCCTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84570 32 -    811265 TGTGCGGTGTAGACGCCGGCCCTGGCCCTCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165261 26 +   1230721 CGTGCGGTGTAGACGCC------GGCCTTCCC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79302  0 +  11138919 C
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=67140.000000
s hg38.chrX_KI270880v1_alt         30237 33 +    284869 ATGAGGTGTGCGGTGTAGACGCGGACCCTCCCG
s gorGor5.CYUI01015925v1           99211 33 +    417917 ATGAGGTGTGTGGTGTAGACGCGGGCCCTCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91821 24 + 149150640 GTGGAGTGTGCGGTGTAGACACCC---------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679537 33 - 171882078 GCGGAGTGTGCGGTGTAGACACCCGCCCTCCTG
i macFas5.chr7                 C 0 T 22
s macNem1.NW_012017243v1          135687 33 +  25972781 ATGAGGCGTGCGGTGTAGACGCCGGCCCTCCCG
i macNem1.NW_012017243v1       T 71 C 0
s cerAty1.NW_012001098v1           99018 33 -   1025902 GCGAGGTGTGCAGTGTAGACACCGGCCCTCCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84602 33 -    811265 GTGGACTGTGCGGTGTAGACACCGGCCCCCTCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165287 33 +   1230721 GTGAAGTTTGCGGTGTAGACACCGGCCCTCCCG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79302 31 +  11138919 --GGGTTGTGTGGTGTAGACACAGCCCCACCTG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=3996.000000
s hg38.chrX_KI270880v1_alt         30270 8 +    284869 TGAGGGAT
s gorGor5.CYUI01015925v1           99244 5 +    417917 TGAGG---
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          135720 8 +  25972781 TGAGGGGT
i macNem1.NW_012017243v1       C 0 I 65
s cerAty1.NW_012001098v1           99051 8 -   1025902 CGAGGGGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84635 8 -    811265 CGAGGAGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165320 5 +   1230721 TGAAG---
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79333 8 +  11138919 TGAGGAGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206 0 + 155549662 C
e rheMac8.chrX                     91845 0 + 149150640 C
e macFas5.chr7                 171679570 22 - 171882078 T
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=2203.000000
s hg38.chrX_KI270880v1_alt         30278 9 +    284869 GAGGCGTGT--
s gorGor5.CYUI01015925v1           99249 5 +    417917 ----CATGC--
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          135793 8 +  25972781 -GAGTGTGC--
i macNem1.NW_012017243v1       I 65 C 0
s cerAty1.NW_012001098v1           99059 9 -   1025902 GAGGCGTGC--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84643 9 -    811265 GAGGCGTGC--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165325 5 +   1230721 ----TGTGT--
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79341 9 +  11138919 --GGTGTGTAT
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206 0 + 155549662 C
e rheMac8.chrX                     91845 0 + 149150640 C
e macFas5.chr7                 171679570 22 - 171882078 T
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=72453.000000
s hg38.chrX_KI270880v1_alt         30287 58 +    284869 GGTGTAGACGCCGGCCCTCCC-------ATGAGGCATGCGGTGTAGACGCGGGCCCT-----CCCGTGAA
s gorGor5.CYUI01015925v1           99254 58 +    417917 GGTGTAGACACGGGCCCTCCC-------ATGAGGTGTGCGGTGCAGACGCGGGCCCT-----CCCGTGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91845 44 + 149150640 -------------GCCCTCCT-------GTGAAGTGTGCGGTGTAGACACCGGCCC------CCCGTGAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679548 57 - 171882078 GGTGTAGACACCCGCCCTCCT-------GTGAAGTGTGCGGTGTAGACACCGGCCC------CCCGTGAA
i macFas5.chr7                 T 22 C 0
s macNem1.NW_012017243v1          135801 57 +  25972781 GGTGTAGACACCCGCCCTCCT-------GTGAAGTGTGCGGAGTAGACACCGGCCC------CCCGTGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99068 65 -   1025902 GGTGTGGACACGGGCCCTCCCGCGAGGGGTGAGGCGTGCGGTGTAGACACGGGCCCT-----CCCGCGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84652 31 -    811265 ---------------------------------------AGTGTAGACGCCGGCCCTGGCCCCCCGCGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165330 58 +   1230721 GGTGTGGACGCCGGCCGTCCC-------GTGAGGTGTGCAGTGTGGACACCGGCGCT-----CCCGTGAG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79350 38 +  11138919 GGTGTAGACACAGCCCCACCT-------GTGAGGAGGGGTGTGTA-------------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panTro5.chrX                    160206  0 + 155549662 C
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=27228.000000
s hg38.chrX_KI270880v1_alt         30345 13 +    284869 GGATAAGGCCTGT
s panTro5.chrX                    160206 13 + 155549662 GGATAAGGCCTGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1           99312 13 +    417917 GGATAAGGCCTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91889 13 + 149150640 GGGTGAGGCGTGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679605 13 - 171882078 GGGTGAGGCGTGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135858 13 +  25972781 GGGTGAGGCGTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99133 13 -   1025902 GGGTGAGGCGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84683 13 -    811265 GGGTGAGGCGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165388 13 +   1230721 GGGTCAGGCGTGC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79388  1 +  11138919 ----------T--
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          182611 771 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=303953.000000
s hg38.chrX_KI270880v1_alt         30358 70 +    284869 GGTGTAGACGCAGGCTCTCACCTGCAAGAAGGGGACAAAGTCCTCCTGCACCAGGTAGTTGCAGCCGGGG
s panTro5.chrX                    160219 70 + 155549662 GGTGTAGACGCAGGCTCTCACCTACAAGAAGGGGACAAAGTCCTCCTGCACCAGGTAGCTGCAGCTGGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1           99325 70 +    417917 GGTGTAGACGCAGGCTCTCACCTGCAAGAAGGGGACAAAGTCCTCCTGCACCAGGTAGTTGCAGCCGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91902 70 + 149150640 CGTGTAGACACCAGCTCTCACCTGCAGGAAGGGGACGAAGTCGTCCTGCACCAGGTAGTTGCAGCCAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679618 70 - 171882078 CGTGTAGACACCGGCTCTCACCTGCAGGAAGGGGACGAAGTCGTCCTGCACCAGGTAGTTGCAGCCAGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135871 70 +  25972781 CGTGTAGACACCGGCTCTCACCTGCAGGAAGGGGACAAAGTCGTCCTGCACCAGGTAGTTGCAGCCAGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99146 70 -   1025902 GGTGTGGACGCCGGCTCTCACCTGCAGGAAGGGGACGAAGTCGTCTGGCACCAGGTAGTTGCAGCCAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84696 70 -    811265 GGTGTGGACGCCGGCTCTCACCTGCAGGAAGGGGACGAAGTCGTCCTGCACCAGGTAGTTGCAGCCAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165401 70 +   1230721 GGTGTAGACGTCGGCTCTCACCTGCAGGAAGGGGACCAGGTCCTCCTGCACCAGGTAGTTGCAGCCAGGG
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          183382 69 -    735872 GGTGTAGACGC-AGCTCTCACCTGCAAGAATGGCACGAAGTCCTCCTGCACCAGGTAGTTGCATCCGGGG
i cebCap1.NW_016107987v1       I 771 C 0
s otoGar3.GL873584                 79389 68 +  11138919 GGTGTAGACACAG--CCTCACCTGCAGGAAGGGGACGAAGTCCTCCTGCACCAGGTAGTTGCAACCAGGG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e panPan2.chrUn_NW_014024225v1     64889 1304 +    105888 M

a score=469246.000000
s hg38.chrX_KI270880v1_alt         30428 91 +    284869 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTCTGGAGGATTCTGGAAGGACA-GGATGACTGGGCACCACCCTCACAGG
s panTro5.chrX                    160289 91 + 155549662 CTCATGAGCAGATGGACAAACTTGGCCGTGTCATCGTGGCAGTTCTGGAGGATTCTGGAAGGACA-GGATGACTGGGCACCACCCTCACAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66193 90 +    105888 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTCTGGAGGATTCTGGAAGGACA-GGATGACTGGGCGCCACCCTCAC-GG
i panPan2.chrUn_NW_014024225v1 M 1304 C 0
s gorGor5.CYUI01015925v1           99395 91 +    417917 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTCTGGAGGATTCTGGAAGGACA-GGATGACTGGGCGCCACCCTCACAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     91972 91 + 149150640 CTCATGAGCAGATGCACGAACTTGGCCGCGTCGTCGTGGCAGTTGTGGAGGATTCTGGAAGGACA-GGATGACTGCGCGCCACCCTCACAGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679688 91 - 171882078 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTGTGGAGGATTCTGGAAGGACA-GGATGACTGCGCGCCACCCTCACAGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          135941 91 +  25972781 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTGTGGAGGATTCTGGAAGGACA-GGATGACTGCGCGCCACCCTCACAGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99216 87 -   1025902 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTGTGGAGGATTCTGGAAGGACA-GGATGACTGCGCGCCACCCTCA----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84766 91 -    811265 CTCATGAGCAGATGGACGAACTTGGCGGCGTCGTCGTGGCAGTTCTGGAGGATTCTGGAAGGACA-GGATGACTGCGCACCACCCTCACAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165471 91 +   1230721 CTCATGAGCAGATGGACGAACTTGGCCGCGTCGTCGTGGCAGTTCTGCAGGATTCTGGAAGGACA-GGATGACTGTGCGGCACCCTCACAGG
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          183451 82 -    735872 CTCATGAGCAGGTGGACGAACTTGGCGGCATCGTCGTGGCAGTTGTGGAGGATTCTGGAAGGACG-GGATGACTGGGCGCCCC---------
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 79457 92 +  11138919 TTCATGAGCAGATGGGTGAACTTGGCTGCGTCATCGTGACAATTCTGGAGGATTCTGGAATGACATGGAGAATCTGATGCTCCCCACACGGG
i otoGar3.GL873584             C 0 I 96
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I

a score=99536.000000
s hg38.chrX_KI270880v1_alt         30519 37 +    284869 GGGG-----TGGCTTTCGA-CCCCGCAGACGCAGGGTGGAACA
s panTro5.chrX                    160380 37 + 155549662 GGGG-----TGGCTTTCGA-CCCCACAGACGCAGGGTGGAACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66283 37 +    105888 GGGG-----TGGCTTTCGA-CCCCGCAGACGCAGGGTGGAACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99486 38 +    417917 GGGG-----TGGCTTTCGACCCCCGCAGACGCAGGGTGGAACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92063 37 + 149150640 CGGG-----GGGGCTTCGA-CCCCGCAGACACAGGGTGGAACA
i rheMac8.chrX                 C 0 I 29
s macFas5.chr7                 171679779 37 - 171882078 CGGG-----GGGGTTTCGA-CCCCGCAGACACAGGGTGGAACA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136032 37 +  25972781 CGGG-----GGGGATTCGA-CCCCGCAGACACAGGGTGGAACA
i macNem1.NW_012017243v1       C 0 I 29
s chlSab2.chrUn_KE147541v1         84857 42 -    811265 CGGGGGGGCGGGGCTTCGA-CCCCGCAGACGCAGGGTGGAACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165562 37 +   1230721 CGGG-----TGGGTTTCGA-CCCCACAGACGCTGGGTGGAACA
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          183533 18 -    735872 --------------------CCGCACAGACGCAGGGTG-----
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79549 96 +  11138919 I
e cerAty1.NW_012001098v1           99303  0 -   1025902 C

a score=43232.000000
s hg38.chrX_KI270880v1_alt         30556 49 +    284869 CGTGTGTGGTGTTCCACGTGGTGCGTGGCAGGTGGCCACACACGACGGC
s panTro5.chrX                    160417 49 + 155549662 CGTGTGTGGTGTTCCACGTGGTGCGTGGCAGGTGGCCGCAAACGACGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66320 49 +    105888 CGTGTGTGGTGTTCCACGTGGTGCGTGACAGGTGGCCACACACGACGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99524 49 +    417917 CATGCGTGGTGTTCCACGTGGTGCGTGGCAGGTGGCAGCACACGACGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171679816 27 - 171882078 ----------------------ACAGGGCAGGCCGCCACGCACGACCCC
i macFas5.chr7                 C 0 I 2
s chlSab2.chrUn_KE147541v1         84899 27 -    811265 ----------------------ACAGAGCAGGCAGCCACGCACGACGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165599 24 +   1230721 -------------------------CGGCAGGCAGCCACGCACGACCCC
i colAng1.NW_012115411v1       C 0 I 2
s cebCap1.NW_016107987v1          183551 31 -    735872 --------------CACG----GCAGGGCAGGCGGCCACACACCACAGC
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79549 96 +  11138919 I
e cerAty1.NW_012001098v1           99303  0 -   1025902 C
e rheMac8.chrX                     92100 29 + 149150640 I
e macNem1.NW_012017243v1          136069 29 +  25972781 I

a score=5500.000000
s hg38.chrX_KI270880v1_alt         30605 1 +    284869 C
s panTro5.chrX                    160466 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66369 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99573 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92129 1 + 149150640 C
i rheMac8.chrX                 I 29 C 0
s macFas5.chr7                 171679845 1 - 171882078 C
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          136098 1 +  25972781 C
i macNem1.NW_012017243v1       I 29 C 0
s cerAty1.NW_012001098v1           99303 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84926 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165625 1 +   1230721 C
i colAng1.NW_012115411v1       I 2 C 0
s cebCap1.NW_016107987v1          183582 1 -    735872 C
i cebCap1.NW_016107987v1       C 0 I 24
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79549 96 +  11138919 I

a score=50250.000000
s hg38.chrX_KI270880v1_alt         30606 12 +    284869 AGGCCTGTGCCC
s panTro5.chrX                    160467 12 + 155549662 AGGCCTGTGCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66370 12 +    105888 AGGCCTGTGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99574 12 +    417917 AGGCCTGTGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92130 12 + 149150640 AGGCCTGCGCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679846 12 - 171882078 AGGCCTGCGCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136099 12 +  25972781 AGGCCTGCGCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99304 12 -   1025902 AGGCCTGTGCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84927 12 -    811265 AGGCCTGTGCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165626 12 +   1230721 AGGCCTGTGCCC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183583 24 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79549 96 +  11138919 I

a score=42237.000000
s hg38.chrX_KI270880v1_alt         30618 14 +    284869 GTACAAGGGTTTCT
s panTro5.chrX                    160479 14 + 155549662 ATACAAGGGTTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66382 14 +    105888 GTACAAGGGTTTCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99586 14 +    417917 ATACAAGGGTTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92142 14 + 149150640 ACGCGCGGGTTTCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679858 14 - 171882078 ACGCGCGGGTTTCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136111 14 +  25972781 ACGCGCGGGTTTCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99316 14 -   1025902 ATGCGCGGGTTTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84939 14 -    811265 ACGCGCGGGTTTCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165638 14 +   1230721 ACGCGCGGGTTTCT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79645 10 +  11138919 GTGCAAGTGT----
i otoGar3.GL873584             I 96 C 0
e cebCap1.NW_016107987v1          183583 24 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I

a score=1133407.000000
s hg38.chrX_KI270880v1_alt         30632 222 +    284869 CCTCTCAC-TGCGGCAGCCTC--AGGGGGCACCCG----------TCCTGGCACCACGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---AGCCCCCTGCCCAGCCCAG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAT-AGAAGAGCGGCCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
s panTro5.chrX                    160493 222 + 155549662 CCTCTCAC-TGCGGCAGCCTC--AGGGGGCACCCG----------TCCTGGCACCACGGGGACCCGGGGACACCTCCGCCCTCCCGACAC---AGCCCCCTGCCCAGCCCAG------GACTCACTTTCTCCACATGGCGACGGACTTGTGGACGGACACGGAGCCCGTGCACTCCCCGCCGGCGCCAC-AGAAGAGCGGCCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66396 222 +    105888 CCTCTCAC-TGCGGCAGCCTC--AGGGGGCACCCG----------TCCTGGCACCACGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---AGCCCCCTGCCCAGCCCAG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAT-AGAAGAGCGGCCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99600 222 +    417917 CCTCTCAC-TGCGGCAGCCGC--AGGGGGCACCCG----------TCCTGGCACCAC-GGGACCCGGGGACGCCTCCGCCCTCCCGACAC---AGCCCCCTGCCCAGCCCAG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCATAAGAAGAGCGGCCCCTTCCAGTAGAGGGGACAGCCGCAGGCCTGGGGCAGAGAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92156 222 + 149150640 CCTCTCAC-GGTGGCAGCCGT--AGGGGGCACCTG----------TCCTGACGCCAGGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---GGCCCCGTGCCCGGCCCGG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAC-AGAAGAGCGGTCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171679872 222 - 171882078 CCTCTCAC-GGTGGCAGCCGT--AGGGGGCACCTG----------TCCTGACGCCAGGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---GGCCCCGTGCCCGGCCCGG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAC-AGAAGAGCGGTCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136125 222 +  25972781 CCTCTCAC-GGTGGCAGCCGT--AGGGGGCACCTG----------TCCTGACGCCAGGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---GGCCCCGTGCCCGGCCCGG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGTTCCCCGCCGGCGCCAC-AGAAGAGCGGTCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99330 221 -   1025902 CCTCTCAC-GGTGGCAGCCGC--AGGGGGCACCTG----------TGCTGACGCCAGGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---AGCCCCGTGCCCGGCCC-A------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAC-AGAAGAGCGGTCCCTTCCAGTAGAGCGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         84953 218 -    811265 CCTCTCAC-GGGG---GCCGC--AGGGGGCACCTG----------TCCTGACGCCACGGGGACCCGGGGACGCCTCCGCCCTCCCGACAC---AGCCCCGTGCCC-GCCCGG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAT-AGAAGAGCGGTCCCTTCCAGTACAGGGGGCAGCCGCAGGCCTGGGGCACAGATGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165652 221 +   1230721 CCTCTCAC-TGTGGCAGCCGC---GGGGGCACCTG----------TCCTGACGCCATTGGGACCCGGGGACGCCTCCACCCTCCCGACAC---AGCCCCGTGCCCGGCCGGG------GACTCACTTTCTCCACATGGCGACGAACTTGTGGACGGACACGGAGCCCGTGCGCTCCCCGCCGGCGCCAT-AGAAGAGCGGCCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGGGGCAGAGAGGG
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          183607 220 -    735872 CCTCTCGC-GGTGGCAGCCAC---GGGGGCCcccg----------tcccggtgccgtgtccacccagggccgcctccgccctcccgccac---ggcccc-tgcccggcccgg------GACTCACTTTCTCCACATGGCGACGAACTTGTGCACAGACACGGAGCCTGTGCGCTCCCCGCCGGCGCCGT-AGAAGAGCGGCCCCTTCCAGTAGAGGGGGCAGCCGCAGGCCTGAGGCAGAGAGGG
i cebCap1.NW_016107987v1       I 24 I 2068
s otoGar3.GL873584                 79655 238 +  11138919 CCTCTCCCATGTGGCAGCTGCACAGGTGAGCCCTGGACAGGCAGCCCTCAGCACTATGAGGAC---GGGA--CCTCTCCTCTCCTGACTCCCGCTTCCCTGGCCCAGCCTGGCTCCCAGACTCACTTTCTCCACATGGCGACGAACTTGTGAACAGACACAGAGCCTGTGCGCTCTCCACCAGCGCCGC-AGAACAGTGGTGCCTTCCAATACAACGGGCAGCCGCAGGCCTGCAGCACAGAGG-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I

a score=189400.000000
s hg38.chrX_KI270880v1_alt         30854 49 +    284869 CAGGAGTGGGCAGTCAGCAGGGCCTGGACGC----------------------CGGCGCTCCTGCTGCGTA
s panTro5.chrX                    160715 49 + 155549662 CAGGAGTGGGCAGTCAGCGGGGCCTGGACGC----------------------CGGCGCTCCTGCTGCGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66618 49 +    105888 CAGGAGTGGGCAGTCAGCGGGGCCTGGACGC----------------------CGGCGCTCCTGCTGCGTA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99822 49 +    417917 CAGGAGTGGGCAGTCAGCGGGGCCTGGACGC----------------------CCGTGCTCCTGCTGCGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92378 49 + 149150640 CAGGAGGGGGCGGTCAGCGGGGCCCGGACGC----------------------ctgcgctcctgctgcgct
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171680094 49 - 171882078 CAGGAGGGGGCGGTCAGCGGGGCCCGGACGC----------------------ctgcgctcctgctgcgct
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136347 71 +  25972781 CAGGAGGGGGCGGTCAGCGGGGCCCGGACGCctgcgctcctgctgcgctcctgctgcgctcctgctgcgct
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99551 49 -   1025902 CAGCAGTGGGCGGTCAGCGGGGCCCGGACGC----------------------ctgcgctcctgctgcgca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         85171 60 -    811265 CAGGAGTGGGCGGTCAGCGGGGCCTGGACGC-----------ctgcgcacctgctgcgctcctgctgcgcg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          165873 49 +   1230721 CAGGAGTGGGCAGTCAGCGGGGCCTGGACGC----------------------CTGCGCTCCTGCTGCGCA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 79893 46 +  11138919 CAGGGGTGGGCGT---GAGGGACCTGGGCAC----------------------CTGCAGGCCTGCAGCACA
i otoGar3.GL873584             C 0 I 6777
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I

a score=1468284.000000
s hg38.chrX_KI270880v1_alt         30903 453 +    284869 -----------CCTCGCGCCTGACCGACGCCGCCCAGAGACCCTCTGCTGCAGAAAGACACAGCACGCTCAGCGCGGCCTGTCTGGGCATCTGCAAACTCAACGTGGCTTTCGCTCCAGCCTTCAATCA-----GTCATGAGAGCTGAGCGTGGGAGTGCCGGGCACGCAGTATCCCCTGACCACAGACCACGCGTGGGCACTGTAACCAGAGGCGGCTGCatccccagcgtctggaaatcaagcggcacgtactaagaaccagtaagtacgggaataaatggccccgtcagccaggcaacgcggtgaatcggacggcgacagaaacatctcatggaatgtgtgggacgcacctacagcagcgacccatggcaggtt---cacagccttaaatacacgcgtgaggaaggaaagtttaaaatcgatcgtctacacttctaccccaaaggaacaaatacatggcagagatggaa
s panTro5.chrX                    160764 453 + 155549662 -----------CCTCGCGCCTGACCGACGCTGCCCAGAGACCCTCTGCTGCAGAAAGACACAGCACGCTCAGTGAGGCCTGTCCGGGCGTCTGCAAACTCAACGTGGCTTTCGCTCCAGCCTTCAAACA-----GTCATGAGAGCTGAGCGTGGGAGTGCCGGGCACGCAGTCTCCCCTGACCACGGACCACGTGTGGGCACTGTAACCAGAGGCGgctgcatccccagcgcctggaaatcaagcggcacgtactaagaaccagtaagtatgggaataaatgGCCCCGTCAGCCAGGCAACGCGGTGAATCGGACGGCGACAGAAacatctcatggaatgtgtgggacgcacctacagcagcgacccatggcaggtt---cacagccttaaatacacgcgtgaggaaggaaagtttaaaatcgatcgtctacacttctaccccaaaggaacaaatacatggcagagatggaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     66667 445 +    105888 -----------CCTCGCGCCTGACCGACGCTGCCCAGAGACCCTCTGCTGCAGAAAGACACTGCACGCTCAGTGAGGCCTGTCCGGGCGTCTGCAAACTCAACGTGGCTTTCGCT-CAGCCTTCAAACA-----GTCATGAGAGCTGAGCGTGGGAGTGCCGGGCACGCAGTCTCCCCTGACCACAGACCACGCGTGGGCACTGTAACCAGAGGCGgctgcatccccagcgtctggaaatcaagcggcacgtactaagaaccagtaagtatgggaataaatgGCCCCGTCAGCCAGGCAACGCGGTGAATCGGACGTCGACAGAAACATCTCATGGAATGTGTGCGACGCACCTACAGCAGCGACCCATGGCAGGTT---CACAGCCTTAAATACACGCGTGAGGAAGG-------AAAATCGATCGTCTACACTTCTACCCCAAAGGAACAAATACATGGCAGAGATGGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1           99871 451 +    417917 -----------CCTCGCGCCTGACCGACGCCGCCCAGAGACCCTCTGCTGCAGAAAGACACAGCACGCTCAGCGAGGCCGTCCGGGGCGTCTGCAAACTCAACGTGGCTTTCGCTCCAGCCTTCCAACA-----GTCATCGGAGCTGAGCGTGGGAGTGCCGGGCACGCAGTCTCCCCTGACCACAGACCACGCGTGGGCACTGTAACCAGAGGCGGCTGCATCCCCAGCGTCTGGAAATCAAGCGGCA-GTACTAAGAACCAGTAAGTACGGGAATAAATGGCCCCGTCGGCCAGGCAACGCGGTGAATCGGACGGCGACAGAaacatctcatggaatgtgtgggacgtacctacagcagcgacccacggcaggtt---cacagccttaaatacacgcgtgaggaaggaaagtttaaaatcgatcgtctacgcttctgccccaaaggaacaaatacatagcacagat-gaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92427 465 + 149150640 cctgccgcgctcctgGCGCCTGACCACCGCTGCCTGGAGACCCTCTGCTGCGGCCAGACGGAGCACACACAGCCAGGCACGTCTGGGTATCTGCAAACTCAATGTGGCTTTCGCTCCGGCCTTGGAACC---GAGTCAGGAGAGCTGAGCCATGGAGTGCCGGGCACGCAGT--CCCCCGACCAGAGACCACACGCGGACACTGTAACCAGAGGCGGCTGCGTCCCCAGTGTCTGCAAACCAAGCGGCGCAGACTAAGAACCAGTATGTGCGGGAAGAAATGGCCCCGTCAGCCAGGCAA-GTGGTGAGTCCCACAGCGACGGAAACGTCTCATGGAACGTGTGGGACAGGCCTGCAGCAG-AGCCCATGGCAGGTTAAATACAGCCTTAAATACACACGCGAGGAAGGAAAGTTTAACATCAGTCGTCTGCACTTCTACCTCAAAGTCACACACACACGGCAGACATGGAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171680143 465 - 171882078 cctgccgcgctcctgGCGCCTGACCACCGCTGCCTGGAGACCCTCTGCTGCGGCCAGACGGAGCACACTCAGCCAGGCACGTCTGGGTATCTGCAAACTCAATGTGGCTTTCGCTCCGGCCTTGGAACC---GAGTCAGGAGAGCTGAGCCCTGGAGTGCCGGGCACGCAGT--CCCCCGACCAGAGACCACACGCGGACACTGTAACCAGAGGCGGCTGCGTCCCCAGTGTCTGCAAACCAAGCGGCGCAGACTAAGAACCAGTATGTGCGGGAAGAAATGGCCCCGTCAGCCAGGCAA-GTGGTGAGTCCCACAGCGACGGAAACGTCTCATGGAACGTGTGGGACAGGCCTGCAGCAG-AGCCCATGGCAGGTTAAATACAGCCTTAAATACACACGCGAGGAAGGAAAGTTTAACATCAGTCGTCTGCACTTCTACCTCAAAGTCACACACACACGGCACACatggaa
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136418 464 +  25972781 cctgctgcgctcctgGCTCCTGACCACCGCTGCCTGGAGACCCTCTGCTGCGGCCAGACGCAGCACACTCAGCCAGGCACGTCTGGGTATCTGCAAACTCAATGTGGCTTTCGCTCCGGCCTTGGAACC---GAGTCAGGAGAGCTGAGCCATGGAGTGCCGGGCACGCAGT--CCCCCGACCAGAGACCACACGCGGACACTGTAACCAGAGGCGGCTGCGTCCCCAGTGTCTGCAAACCAAGCGGCGCAGACTAAGAACCAGTATGTGCGGGAAGAAATGGCCCCGTCAGCCAGGCAA-GTGGTGAGTCCCACAGCGACGGAAACGTCTCATGGAACGTGTGGGACAGGCCTGCAGCAG-AGCCCATGGCAGGTTAAATACAGCCTTAAATACACACGCGAGGAAGGAAAG-TTAACATCAGTCGTCTGCACTTCTACCTCAAAGTCACACACACATGGCAGACATGGAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1           99600 461 -   1025902 cctgctgcgctcctggctcctgaccggcgctgctCGGAGACCCTCTGCCGCGGAAACACGCAGCACACTCAGCCAGGCACGTCCGGGTATCTGCAAACTCAACCTGGCGTTCGCTCCGGCCTTGGAACC---GAGTCAGGAGAGCTGAGCCACGGAGT-CCGGGCACACAGT--CCCCCGACCAGAGACCACACGCGGGCACTGTAAGCAGAGGCGGCTGCGTCCCCAGTGTCTGCAAACCAAGCGGCGCAGACTAAGGACCAGTATGTGCGGGAAGAAATGGCCGCGTCAGCCAGGCAG-GTGGTGAGTCCCACAGCGACGGAAACATCTTAGGGAACGTGTGGGACAGGCCTGCAGCAC-AGCCCATGGCAGGTT---CCCAGCCTTAAATACACACGCGAGGAAGGAAAGTTTAACATCAGTCATCTGCACTTCTACCTCAAAGTCACACACACACGGCAgagatggaa
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         85231 460 -    811265 cctgctgcgctcctgGCGCCTGACCGCCGCTGCCCGGAGACCCTCTGC-GCGGAAAGACGCAGCACACTCAGCCAAGCACGTCCCGGTATCTGCAAACTCaacgtggctttcgctccggccttggaacc---gagtcaggacagctgagccatggagt-ccgggcacgcagt--cccccgaccagagaccacacGCGGGCACTGTAACCAGAGGCGGCTGCGTCCCCAGTGTCTGGAAACCAAGCGGCGCAGACTAAGAACCAGTACGTGCGGGAAGAAATGGCCCCGTCAGCCAGGCAG-GTGGTGAGTCCGACAGCGACAGAAACATCTTATGGAACGTGTGGGACAGGCCTGCAGCAG-AGCCCATGGCAGGTT---CCCAGCCTTCAATACACACGCGAGGAAGGAAAGTTTAACATCAGTCGTCTGCACTTCTACCTCAAAGTAACACACACACGGCAGAGATGGAA
i chlSab2.chrUn_KE147541v1     C 0 I 1586
s colAng1.NW_012115411v1          165922 466 +   1230721 CCTGCCGCGCACCTGGCGCCTGACCGGCGCTGCGCGGAGACCCTCTACTGCAGAAAGACGCAGCACACTCAGCCAGGCACGTCCGGGTG-CCGCAAACTCCACCTGGCTTTCGCTCCAGCTTTGGAACCCATGAGTCAGGAGAGTGGAGCGATGGAGTGCCGGGCACGCAGTC-CCCCCGACCAGAGACCACAGGCGGGCCCTGTAACCAGACGCGGCTGCGTCCGCAGTGTCTGGAAATCAAGCGGCATAGACTAGGAACCAGTATGTGCAGGAAGAAATGGCCCCGTCAGCCAGGCAA-GTGGTGAGTCTGACAGCGACAGAAGCATCTTACGGAACGTGTGGGACAGGCCCGCAGCAGCGGCCCATGGCAGGTT---CACAACCTTCAATACACAGGTGAGGAAGGAAAGTTTAAAATGAGTCATCTGCACTTGTACCTCACAGTAACAAACACAGGGCAGAGATGGAA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I

a score=709385.000000
s hg38.chrX_KI270880v1_alt         31356 280 +    284869 ---cgcaaagtaaatagtaacagaaaatcaacaaaatcaaaactcgatgatttgaaagatttcttaaaaattaattaaccctggctggctgggcgtggtggctcatgcctgtaatcccagcactttaggaggc-cgaggggggtggatcacctgaggtcaggagttcgagaccagcctggccaac-atggtg-aaacctcgtctctactaaaaacac-aaaaattagcctggcatggt---ggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatc
s panTro5.chrX                    161217 276 + 155549662 ---cgaaaagtaaatagtaacagaaaatcaacaaaatcaaaactcgatgaTTTGAAAGATTTCTTAAAAATTAATTAACC----CTggctggactcgatggctcatggctgtaatcccagcactttaggaggc-cgaggggggtggatcagctgaggtcaggagttcgagaccagcctggccaac-atggtg-aaaccccgtctctactaaaaacac-aaaaattagcctggcatggt---ggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     67112 276 +    105888 ---CGCAAAGTAAATAGTAACAGAAAATCAACAAAATCAAAACTCGATGATTTGAAAGATTTCTTAAAAATTAATTAACC----CTggctggactcgatggctcatggctgtaatcccagcactttaggaggc-cgaggggggtggatcagctgaggtcaggagttcgagaccagcctggccaac-atggtg-aaacctcgtctctactaaaaacac-aaaaattagcctggcatggt---ggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          100322 276 +    417917 ---caaaaagtaaatagtaacagaaaatcaacaaaatcaaaactcgatgatttgaaagatttcttaaaaattaattaacc----ctggctgg-cgcggtggctcatggctgtaatcccagcactttaggaggcggggggggggtggatcacctgaggtctggagttcgagaccagcctggccaac-atggtg-aaaccccgtctctactaaaaacac-aaaaattagcctggcatggt---ggcaggcgcctgtaatcccagctactcgggaggctgagacaggagaatc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     92892 274 + 149150640 GGAAAAACAGTCAACAG----AGAAAATCAGGAAAATCAAAACTTGATGATTTGAAAGA-TTCTTAACAATTAATTAACC----CT-gctgggcgcggtggctcaggcctgtcatcccagcagtttcagaggc-tgaggtgggcggatcac--gagatcaggagttcgagaccagcctggccaag-atggtg-caaccccgtctctcctaaaaatac-aaaaattatctgggcgtggtggtggcgggcgcctgtaatcccagttactcaggacgctgaggcaggagaatc
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171680608 274 - 171882078 ggaaaaacagtcaacag----agaaaatcaggaaaatcaaaacttgatgatttgaaaga-ttcttaacaattaattaacc----ct-gctgggcgcggtggctcaggcctgtcatcccagcagtttcagaggc-tgaggtgggcggatcac--aaggtcaggagttcgagaccagcctggccaag-atggtg-caaccccgtctctcctaaaaatac-aaaaattatctgggcgtggtggtggcgggcgcctgtaatcccagttactcaggacgctgaggcaggagaatc
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          136882 274 +  25972781 GGAAAAACAGTCAACAG----AGAAAATCAGGAAAATCAAAACTTGATGATTTGAAAGA-TTCTTAACAATTAATTAACC----CT-gctgggcgcggtggctcaggcctgtcatcccagcagtttcagaggc-tgaggtgggcggatcac--gaggtcaggagttcgagaccagcctggccaag-atggtg-caaccccgtctctcctaaaaatac-aaaaattatctgggcgtggtggcggcgggcgcctgtaatcccagttactcaggacgctgaggcaggagaatc
i macNem1.NW_012017243v1       C 0 I 881
s cerAty1.NW_012001098v1          100061 271 -   1025902 ggaaaaacagtcaacag----agaaaatcaggaaaatcaaaacttgatgatttgaaaga-ttcttaacaattaattaacc----ct-gctgggcgcggtggctcaggcctgtcatcccagcagtttcagaggc-tgaggtgggcggatcac--gaggtcaggagttcgagaccagcctggccaaacatggtg-aaaccctgtgtctactaaaaatac--aaaatcagccggatgtggt---ggcaggtgcctgtagtcccagctactcaggaggcggaggcaggagaatc
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          166388 275 +   1230721 GGAAAAATAGTCAACAG----AGAAAATCAAGAAAATCAAAACTTGATGATTTGAAAGATTTCTTAAAAATTAATTAACC----TT-gctgggcacggtggctcaggcctgtaatcccagcagtttcagaggc-cgaggtgggcggatcac--aaggtcaggagttcgagacccgcctggccaaacacggtgaaaaccccgtctctactaaaaatacaaaaaattagccagacgtggt---ggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatc
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I

a score=36812.000000
s hg38.chrX_KI270880v1_alt         31636 18 +    284869 acttgatcctgggaggtg
s panTro5.chrX                    161493 18 + 155549662 acttgatcctgggaggtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     67388 18 +    105888 acttgatcctgggaggtg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          100598 18 +    417917 acttgatcctgggaggtg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                     93166 18 + 149150640 gcgtgaacccgggaggtg
i rheMac8.chrX                 C 0 I 1461
s macFas5.chr7                 171680882 18 - 171882078 gcttgaacccgggaggtg
i macFas5.chr7                 C 0 I 20
s cerAty1.NW_012001098v1          100332 18 -   1025902 gcttcagcctgggaggcg
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          166663 18 +   1230721 gcttgaacctgggaggcg
i colAng1.NW_012115411v1       C 0 I 9
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=84179.000000
s hg38.chrX_KI270880v1_alt         31654 67 +    284869 gaggttgcagtaagccacgatcacaccactgcactccagcctgggtgacagagagagactctgtctc
s panTro5.chrX                    161511 67 + 155549662 gaggttgcagtgagccacgatcacaccactgcactccagcctgggtgacagagagagactctgtctc
i panTro5.chrX                 C 0 T 29845
s panPan2.chrUn_NW_014024225v1     67406 67 +    105888 gaggttgcagtgagccacgatcacaccactgcactccagcctgggtgacagagagagactctgtctc
i panPan2.chrUn_NW_014024225v1 C 0 I 10
s gorGor5.CYUI01015925v1          100616 67 +    417917 gaggttgcagtgagccacgatcacaccactgcactccagcctgggtgacagagagagactctgtctc
i gorGor5.CYUI01015925v1       C 0 I 17
s cerAty1.NW_012001098v1          100350 67 -   1025902 gaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcgagactctgtctc
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          166690 67 +   1230721 ggaggtgcagtgagccgagatcgtgccattgcactccagcctgggtgacagggcaacactctgtctc
i colAng1.NW_012115411v1       I 9 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I
e macFas5.chr7                 171680900 20 - 171882078 I

a score=720526.000000
s hg38.chrX_KI270880v1_alt         31721 639 +    284869 -------aaaaaa--------agagcaaatacagattagccatgtcagctgtaactacagatcctacaaacatc--agatagtggatgctcatgaatcacttt-atgcctgtaagtcagatgactgctgaaaca-gactccccgatgaa-----caagtcaaaaaataaactacaatagaaaatctgaaagagctgtttctgcaagaaattgtgtccataatttaaaactgtcccaccaagaaaattccagcccccaaaggctgctcccatgagtcgaccaaacattgaaggaagaaatcacacatgcgtt------------------------------cccctggagaagaaaaacgaggggcgtttcccagtgcctgttccgaggctggcacagcctggacgcggtcagggacacaggaagtcacaggccagttatcactggagagcagaggcagaaatcccacacagaacacacagtagcaagtccaactcggcaataatagaacaggaatatctaataataataatagaccagg-aaaccagaatcaggagggacactcttattctcataaagggtgctatggcctgaatgcctgggtccccaagatccacgtgctgaaatcctctcccccgaggcgatggtgttgggaggtggggcctcatgaatgcgatgagtcccc-ttctgaggg
s panTro5.chrX                    131733 639 + 155549662 -------aaaaaa--------agagcaaacacagattagccatgtcagctgtaactacagatcctacaaacatc--agatagtggatgctcatgaatcacttt-atgcctataagtcagatgactgctgaaaca-gactccctgatgaa-----caagtcaaaaaataaactacaatagaaaatctgaaagagctgtttctgcaagaaattgtgtccataatttaaaactgtcccaccaagaaaattccagcccccaaaggctgctcccatgagtcgaccaaacattgaaggaagaaatcacacatgcgtt------------------------------cccctggagaagaaaaacgaggggcgtttcccagtgcctgttccgaggctggcacagcctggacgcggtcagggacacaggaagtcacaggccagttatcactggagagcagaggcagaaatcccacacagaacacacagtagcaagtccaactcggcaataatagaacaagaataTCTAATAatgataatagaccagg-aaaccagaatcaggagggacactcttcttctcataaagggtgctatggcctgaatgcctgggtccccaagatccacgtgctgaaatcctctcccccgaggcgatggtgttgggaggtggggcctcatgaatgcgatgagtcccc-ttctgaggg
i panTro5.chrX                 T 29845 C 0
s panPan2.chrUn_NW_014024225v1     67483 639 +    105888 -------aaaaag--------agagcaaaTACAGATTAGCCATGTCAGCTGTAactacagatcctacaaacatc--agatagtggatgctcatgaatcacttt-atgcctataagtcagatgactggtgaaaca-gactccctgatgaa-----caagtcaaaaaataaactacaatagaaaatctgaaagagctgtttctgcaagaaattgtgtccataatttaaaactgttccaccaagaaaattccagaccccaaaggctgctcccatgagtcgaccaaacattgaaggaagaaatcacacatgcgtt------------------------------cccctggagaagaaaaacgaggggcgtttcccagtgcctgttccgaggctggcacagcctggacgcggtcagggacacaggaagtcacaggccagttatcactggagagcagaggcagaaatcccacacagaacacccagtagcaagtccaactcggcaataatagaacaagaatatctaataatgataatagagcagg-aaaccagaatcaggagggacactcttcttctcataaagggtgctatggcctgaatgcctgggtccccaagatccacgtgctgaaatcctctcccccgaggcgatggtgttgggaggtggggcctcatgaatgcgatgagtcccc-ttctgaggg
i panPan2.chrUn_NW_014024225v1 I 10 C 0
s gorGor5.CYUI01015925v1          100700 628 +    417917 -------aaaaag--------agagcaaacacagattagccatgtcagctgtaactacagatcctacaaatatc--agatagtggatgctcatgaatcactttaatgcctataagtcagatgactggtgaaaca-gactccctgatgaa-----caagtcaaaaaataaactacaatagaaaatctgaaagagctgtttctgcaagaaattgtgtccataatttaaaactgtcccaccaagaaaattccagcccccaaaggctgctcccatgagtcgaccaaacattgaaggaagaaatcacacatgcatt------------------------------cccctggagaagaaaaacga-gggcgtttcccagtgcctgttccgaggctggcacagcctggacgcggtcagggacacaggaagtcacaggccagttatcactggagagcagaggcagaaatcccacacagaacacacagtagcaagtccaactcggcaataactgaaa-------------aatcataatagaccaggaaaaccagaatcaggagggacacgcttattctcataaagggtgctatggcctgaatgcctgggtccccaagatccacgtgctgaaatcctctcccccgaggcgatggtgttgggaggtgggacctcatgaatgcgatgagtcccctttctaaggg
i gorGor5.CYUI01015925v1       I 17 C 0
s cerAty1.NW_012001098v1          100417 670 -   1025902 aaaaaaaaaaaaaaaaaaaggagagaaaacacagattagccacgtcagctgtaactacagaccctgcaaacatc--agtcagtggatgctcatgaatcacttt-atgcctgtaagtcacatgactgttgaaaca-gactccctgaagaacagttcaagtcaaaaaataaacaacaatagaaaatctgaaagggctgtttctgcgagaaattgaatccatcatttaaaagtgtcccaccaagaaaattccagcccccaaatgcggctcccatgagtggaccaaacatttgaggaaggaatCCCAGATGCGTTAACATTTAAGGAAGGAATCCCAGCTGCGTCACCCTGGAGAATAAACACGAGGGGTG-TTCCCAGTGTCTGTTCCGAGGCTGGCACAGCCTGGACGTGGTCAAGGACACAGGGATTCCCAGGCCGGTTATCCCT-------AGAGGCAGAAATCCCACGCAGGACACACACGAGCAAGTCCAACTCGGCAGTAATTGAAAA-------CCcacaataacaaccaaccagg-ataccagaaacaggacggacactctcattgtaataaaaggtgctatggcctgactgcc-gggtccc---gatctgcctgttgaaatcctctcccctaaggcgacggtgctgggaggtggggcctcatgaatgcgatgagtctcc-tcctaacgg
i cerAty1.NW_012001098v1       C 0 I 59
s colAng1.NW_012115411v1          166757 636 +   1230721 aaaaaaaaaagac--------agagaaaaCACAGATTAGCCATGTCAGCTGTAactacagaccctgcaaacatcagagtcagtggatgctcctgaatcacttt-atgcctgtcagtcagacgactgttgaaacaggactccgtgaagaacagttcaagtgaagaaataaacgacaatagaaaatctgaaaggactgtttctgcgagaaattgaatccaacgtttgaaactgtcccaccaagaaaattccagccccccaaggcggctcccatgagcggaccacacatttaaggaagaaatcccacgtgcgtt------------------------------accccggagaatagaaacgaggggcgtttcccagtgtctgctccgaggctggcacagcctggacgcggtcaaggatgcaggaagtcacaggccagttatcact-------agaggcagaaacgccacgcagaacacacacgagcaagtccaactcggcagtaattgaaaa-------gccacaataataATCGGCCAGG-AAACCAGAAGCAGGACGGACGCTCCTACTGTAATAGAGGGtgctatggcctgactgcctgggtccc---gatctgcgtgttgaaatcctctcccc-gaggcgacggtgttgggaggtggggcctcacgaatgcgatgagtctcc-ttctaacgg
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I
e macFas5.chr7                 171680900  20 - 171882078 I

a score=49988.000000
s hg38.chrX_KI270880v1_alt         32360 72 +    284869 accccagagagctc--cctcaccccttccaccccgtgaggacgcagcgggaaggcgccgtcgatgaaccaggca
s panTro5.chrX                    132372 74 + 155549662 accccagagagctctccctcaccccttccaccccgtgaggacgcagcgggaaggcgccgtcgatgaaccaggca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68122 74 +    105888 accccagagagctgtccctcaccccttccaccccgtgaggacgcagcgggaaggcgccgtcgatgaaccaggca
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101328 72 +    417917 accccagagagctc--cctcgccccttccaccccgtaaggacgcagcgggaaggcgccgtcgatgaaccaggca
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          167393 50 +   1230721 gcccccgagagctc--cgtcaccccttccaccctgt----------------------gtcgatgaaccaggca
i colAng1.NW_012115411v1       C 0 I 11
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e cerAty1.NW_012001098v1          101087 59 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I
e macFas5.chr7                 171680900 20 - 171882078 I

a score=577782.000000
s hg38.chrX_KI270880v1_alt         32432 488 +    284869 ccactctgccacaccgagatcttccagcctgcagacctgtgaacagtaaatgtcttgctggtgacaagctgcccgggctatggtgtttcttgacagcagcctgaatg--ctcagacaaagggcctctacgaaacaccccagctgc--tcagacagcgatgacacatgaacacttcctccctgtgctgggaacaagaggacagtgtcaccaccaaggccgcctggacggccgagccagggcagcaggcaagggaaagaccgaaagatacgacgacgggtaagaagaggcagaaccgtcatgattcacaagcaacacactgtgtagacaatccaaatgcttaccaaatacgggaattaataagtatcttcagcaaagttgctggatccaaggactatatgcaaaaataaattatttcaatatactggcaacaaacaacta-aaaataaaatcttcaataatgccatctatcaagagcat----gaaaaatcaacctacg
s panTro5.chrX                    132446 488 + 155549662 ccactctgccacaccgagatcttccagcctgcagacctgtgaacagtaaatgtcttgctggtgacgagctgcccgggctatggtgtttcgtgacagcagcctgaatg--ctcagacaaagggcctctacgaaacaccccagctgc--tcagacagcgatgacacacgaacacttcctccctgtgctgggaacaagaggacagtgtcaccaccaaggccgcctggacagccgagccagggcagcaggcaagggaaagactgaaagatacgacgacgggtaagaagaggcaggaccatcataattcacaagcaacacactgtgtagacaatccaaacgcttaccaaatacgggaattaataagtatcttcagcaaagttgctggatccaaggactatatgcaaaaataaattattccaatatactggcaacaaacaacta-aaaataaaatcttcaataatgccatctatcaagagcat----gaaaaatcaaactacg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68196 489 +    105888 ccactctgccacaccgagatcttccagcctgcagacctgtgaacagtaaatgtcttgctggtgacgagctgcccgggctatggtgtttcgtgacagcagcctgaatg--ctcagacaaagggcctctacgaaacaccccagctgc--tcagacagcgatgacacacgaacacttcctccctgtgctgggaacaagaggacagtgtcaccaccaaggccgcctggacagccgagccagggcagcaggcaagggaaaggctgaaagatacgacgacgggcaggaagaggcagaaccgtcataattcacaagcaacacactgtgtagacaatccaaatgcttaccaaatacgggaattaataagtatcttcagcaaagttgctggatccaaggacaatatgcaaaaataaattatttcaatatactggcaatgaacaactagaaaataaaatcttcaataatgccatctatcgagagcat----gaaaaatcaacctacg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101400 488 +    417917 ccactctgccacacagagatcttccagcctgcagacctgtgaacagtaaatgtc-tgctggtgacgagctgcccgggctatggtgtttcgtgacagcagcctgaatgctctcagacaaagggcctctacgaaacaccccagctgc--tcagacagctatgacacacgaacacttcctccctgtgct-ggaacaagaggacagtgtcaccacgaaggccgcctggacggccgagccagggcagcaggcaagggaaaggctgaaagatatcgcgacgggtaggaagagtcagaaccgtcataattcacgagcaacacaatgtgtagacaatccaaacgcttaccaaatacgggaattaataagtatcttcagcaaagttgctggatccaaggacaatatgcaaaaataaattatttcaatatactggcaacaaacaacta-aaaataaaatcttcaataatgccatctatcaagagcat----gaaaaatcagcctacg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          101146 492 -   1025902 ccacgttgccacaccgtgatcgtccagcctgcagggctgtgagcaatgaatgtc-tgcggctgaggagctgcccgggccgtgctgt--tgtgacagcagcctgaatgctctaagacacggggcatccacgaaaca-ccccgctgctctcacacagcgatgacacacgaacgcttcctccctgcgccggaaacaagaggaccgtgtcactgccaa-gccgcctggacggccgagccagggcagcaggcaagagaaaggctggaagatgccacgacggggaggaagaggcaaaactgtcttaattcacaagcaacaaactgtgcagacaatccaaacgcttacccaatacgggaattaataagtgtcttcagcaaagctgctggatcccaggacaatatgcaaaaataaattatttcaatgtactggcaacaaacaactagaaaataaaatcttcaataatgctatctatcgagggcatttaaaaaaaatcaacctatg
i cerAty1.NW_012001098v1       I 59 I 1
s colAng1.NW_012115411v1          167454 496 +   1230721 ccactctgccacaccgtgatcttccagcctgcagagctgtgagcaatgaatgtc-tgcggctgacgagccgcccgggctatggtgttctgtgacggcagcctgaatgctctgagacaCGGGGCGTCTACGAAACAGCCCAGCTGCTGTCAGACAGCGATGACACGCGAACGCTTCCTCCCTGTGCCGGACACAAGAGGACCGTGTCACCGCCAAGGCCGCctggacggccgagccagggcagcaggcaagagaaaggcggaaagatgccacgacggggaggaagaggcagaaccctcttaattcacaagcaacaaactgtgcagacaatccaaacgcttaccagacacgggaattagtaagtatcttcagcaaagctgctgcatccaaggacaatatgccacaataaattatttcaatgtactggcaacaaacaactagaaaataaaatcttcaataatgccaactatcaagagcattttaaaaaaatcaacctatg
i colAng1.NW_012115411v1       I 11 I 2
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I
e macFas5.chr7                 171680900  20 - 171882078 I

a score=11038.000000
s hg38.chrX_KI270880v1_alt         32920 13 +    284869 aaaaa-tggaac-aa
s panTro5.chrX                    132934 14 + 155549662 aaaaaatggaac-ca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68685 15 +    105888 aaaaaatggaacaca
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101888 15 +    417917 aaaaaatggaacaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171680920 12 - 171882078 -aaaaataaaa--ac
i macFas5.chr7                 I 20 C 0
s cerAty1.NW_012001098v1          101639 13 -   1025902 -aaaaatggaac-aa
i cerAty1.NW_012001098v1       I 1 C 0
s colAng1.NW_012115411v1          167952 13 +   1230721 -aaaaatggaac-aa
i colAng1.NW_012115411v1       I 2 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         85691 1586 -    811265 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=29346.000000
s hg38.chrX_KI270880v1_alt         32933 13 +    284869 aaatcacacacag
s panTro5.chrX                    132948 13 + 155549662 aaatcacacacag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68700 13 +    105888 aaatcacacacag
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101903 13 +    417917 aaatcacacacag
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171680932 13 - 171882078 aaatcacaCACAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          101652 13 -   1025902 aaATCACACACAG
i cerAty1.NW_012001098v1       C 0 I 261
s chlSab2.chrUn_KE147541v1         87277 13 -    811265 AAATCACATACAA
i chlSab2.chrUn_KE147541v1     I 1586 C 0
s colAng1.NW_012115411v1          167965 13 +   1230721 aaatcatgcacaG
i colAng1.NW_012115411v1       C 0 I 267
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=1911.000000
s hg38.chrX_KI270880v1_alt         32946 1 +    284869 t
s panTro5.chrX                    132961 1 + 155549662 t
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68713 1 +    105888 t
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101916 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171680945 1 - 171882078 T
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          101926 1 -   1025902 T
i cerAty1.NW_012001098v1       I 261 C 0
s chlSab2.chrUn_KE147541v1         87290 1 -    811265 T
i chlSab2.chrUn_KE147541v1     C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          167978 267 +   1230721 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=268867.000000
s hg38.chrX_KI270880v1_alt         32947 116 +    284869 gtctacaaagcaaactgcagggcacggctgggtgaaatcaaagacgacctcaaCGTGGTGAGGTGGACCTCACTG-----CTGAGTTCACAGACTGCAGTTTCCTCCAGACGACTCTGTTG
s panTro5.chrX                    132962 116 + 155549662 gtctacaaagcaaactgcagggcacggctgggtgaaatcaaagacgacctcaatgtggtgaggtggaccTCACTG-----CTGAGTTCACAAACTGCGATTTCCTCCAGACGACTCTGTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68714 116 +    105888 gtctacaaagcaaactgcagggcacggctgggtgaaattaaagacgacctcaaCGTGGTGAGGTGGACCTCACTG-----CTGAGTTCACAGACTGCAATTTCCTCCAGACGACTCTGTTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          101917 114 +    417917 gtctacaaagcaaactgcagggcacggctgggtgaaatcaaagacgacctcaacgtggtgaggtggacctcactg-----ctgagttcacagactgcaatttcctccagacga--ctgttg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171680946 121 - 171882078 GtctacaaagcaaactacagagcacggctgggtgaaatcaaagacgacctaaacgtggtaacaTGGACCTCACTGCACTGCTGGGTTTACAGGCTGCAATTTCTTCCAGACGATTCTGCTG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          101927 121 -   1025902 GTCTACAAAGCAAACTACAGGGCACGGCTGGGTGAAATCAACGACGACCTAAACGTGGTGACGTGGACCTCACTGCACTCCTGAGTTTACAGACTGCAGTTTCCTCCAGACGACTCTGCCG
i cerAty1.NW_012001098v1       C 0 I 795
s chlSab2.chrUn_KE147541v1         87291 121 -    811265 GTCTACAAAACAAACTACAGAGCACGGCTGGGTGAAATCAAAGACGACCTAAACGTGGTGAGGTGGACCTCACTGCACTGCTGAGTTTACAGACCACAATTTCCTCCAGACGACTCTGCTG
i chlSab2.chrUn_KE147541v1     C 0 I 94
s colAng1.NW_012115411v1          168245 121 +   1230721 GTCTACAAAGCAAACTACAGAGCACGGCTGGGTGAAATCAAAGACGACCTAAACGTGGTGAGGTGGACCTCACTGCGCTGCTGAGTTTACAGACTGCAATTTTCTCCAGACGACTCTGCTG
i colAng1.NW_012115411v1       I 267 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=66852.000000
s hg38.chrX_KI270880v1_alt         33063 36 +    284869 ACC--CAGAGTCCACGCGATCCCCACCCA------------------CAGAGTCCA
s panTro5.chrX                    133078 34 + 155549662 ACC--CAGAGTCCACGCCATCCCCACCCA--------------------GAGTCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68830 36 +    105888 ACC--CAGAGTCCACGCGATCCCCACCCA------------------CAGAGTCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102031 36 +    417917 acc--cagagtccacgcgatccccaccca------------------cagagtcca
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681067 38 - 171882078 ACCCACAGAATCCACACAATCCCCACCCA------------------CAGAGTCCA
i macFas5.chr7                 C 0 I 279
s cerAty1.NW_012001098v1          102843 34 -   1025902 acc--cagagtccacgcagcccccacc--------------------cagagtcca
i cerAty1.NW_012001098v1       I 795 I 1
s chlSab2.chrUn_KE147541v1         87506 38 -    811265 ACCCACAGAGTCCACGCAGCCCCCACCCA------------------CAGAGTCCA
i chlSab2.chrUn_KE147541v1     I 94 I 1
s colAng1.NW_012115411v1          168366 56 +   1230721 ACCCACAGAGTCCACGCAGCCCCCACCCAGAGTCCACGCAGCCCACCCAGAGTCCA
i colAng1.NW_012115411v1       C 0 I 1
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=8531.000000
s hg38.chrX_KI270880v1_alt         33099 5 +    284869 GCAAT
s panTro5.chrX                    133112 5 + 155549662 GCAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68866 5 +    105888 GCAAT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102067 5 +    417917 gcaat
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681384 5 - 171882078 GCAGC
i macFas5.chr7                 I 279 C 0
s cerAty1.NW_012001098v1          102878 5 -   1025902 acagc
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1         87545 5 -    811265 GCAGC
i chlSab2.chrUn_KE147541v1     I 1 C 0
s colAng1.NW_012115411v1          168423 5 +   1230721 GCAGC
i colAng1.NW_012115411v1       I 1 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          137156 881 +  25972781 I

a score=338474.000000
s hg38.chrX_KI270880v1_alt         33104 102 +    284869 CCCCATCCACATGCACCGAGGGCCTGTTGTTTTGGGGTTTGTAGTATACACGGACAGGCTCATGTGAAAACTTACCAGGGAACACAAAAGAACTCACaggg---g
s panTro5.chrX                    133117 102 + 155549662 CCCCATCCACATGCACCGAGGGCCTGTTGTTTTGGGGTTAGTAGTATACACGGACAGGCTTATGTGAAAACTTACCAGGGAACACAAAAGAACTCACAGGG---G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68871 102 +    105888 CCCCATCCACATGCACCGAGGGCCTGTTGTTTTGGGGTTTGTAGTATACACGGACAGGCTCATGTGAAAACTTACCAGGGAACACAAAAGAACTCACAGGG---G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102072 102 +    417917 ccccatccacatgcaccgagggcctgttgttttggggtctgtagtatacacggacaggctcatgtgaaaacttaccagggaacacaaaagaactcgcaggg---g
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681389 101 - 171882078 CCCCACCTACATGCACCAAGGGCTTCTTGTTTTGGGGTGTGCAGTATACACTGACAGGCTCGCATGAAAACTTATAAGGGAACACAAAAGAACTTCCAGGG----
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138037 102 +  25972781 CCCCACCTACATGCACCAAGGGCTTGTTGTTTTGGGGTGTGCAGTATACACTGACAGGCTCGCATGAAAACTTGTAAGGGAACACAAAAGAACTTCCAGGGG---
i macNem1.NW_012017243v1       I 881 I 31
s cerAty1.NW_012001098v1          102883 101 -   1025902 ccccacccacatgcaccgagGGCTTGTTGTTTTGGGGTGTGCGGTATACACTGACAGGCTCGCATGAAAACTTATAAGGGAACACAAAAGAACTTCCAGGG----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         87550 101 -    811265 CCCCACCCACATGCACCAAGGGCTTGTTGTTTTGGGGTGTGCAGTATACACTGACAGGCTCACGTGAAAACTTAAAAGGGAACACAGAAGAACTTCCAGGG----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            6740 102 -    350446 CCCCACCCACATGCACCGAGGGCTTGTTGTTTTGGGGTGTGCAGTATACACTGACAGGCTCGCATGAAAACTTACAAGGGAACACAAAAGAACTTCCAGGG-G--
i manLeu1.NW_012108508v1       N 0 I 85
s colAng1.NW_012115411v1          168428  99 +   1230721 CCCCAGCCACATGCACCGAGGGCTTGTTG--TTGGGGTGTGCAGTGCACACTGACAGGCTCATGTGAAAACTTACAAGGGAACACA-AAGAACTTGCAGGG--G-
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=132905.000000
s hg38.chrX_KI270880v1_alt         33206 87 +    284869 gaccaagttggtggatatgagtcccactgcccggtttcaacccttcctgtaaagtcagagtaatgaagacTCAGTCAGTCTCTGTCG
s panTro5.chrX                    133219 87 + 155549662 GACCAAGTTGGTGGATATAAGTCCCACCGCCCGGTTTCAACCCTTCCTGTAAAGTCAGAGTAATGAAGACTCAGTCAGTCTCCATCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     68973 83 +    105888 GACCAAGTTGGTGGATATAAGTCCTACCGCCCGGTTTCAACCCTTCCTGTAAAGTCAGAGTAATGAAGAC----TCAGTCTCCATCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102174 87 +    417917 gaccaagttggtggatataagtcccactgcccggtttcaacccttcctgtaaagtcagagtaatgaagacTCAGTCAGTCTCCATCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681490 32 - 171882078 GACCACGTTGATGGATGTAAG-------------------------------------------------------AGTCTCCCTCA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          102984 81 -   1025902 GACCACGTTGATGGATGTAAGTCCCACTGCCCCATTTCAACCCTTCCTGTAAAGTCAGGGCCATGAAG------TCAGTCTCCCTCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         87651 81 -    811265 GACCACGCTGGTGGATGTAAGTCCCACTGCCCCATTTCAACCCTTCCCGTAAAGTCAGGGCCATGAAG------TCAGTCTCCCTCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          168527 80 +   1230721 -ATCACGCTGGTGGATGTAAGTCCCACTGCCCCATTTCAACCCTTCCCGTAAAGTCAGGGTAATGGAG------TCAGTCTCCCTCA
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1            6842 85 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          138139 31 +  25972781 I

a score=125133.000000
s hg38.chrX_KI270880v1_alt         33293 50 +    284869 GGCACCGGTGGCCTAAGAGAGCAAGGGAAGGAAGTGAGTTGGGACAGA--GC
s panTro5.chrX                    133306 50 + 155549662 GGCACCGGTGGCCTAAGGGAGCAAGGGAAGGAAGTGAGTCGGGACACA--GC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69056 50 +    105888 GGCACCGGTGGCCTAAGAGAGCAAGGGAAGGAAGTGAGTTGGGACAGA--GC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102261 50 +    417917 GGCACCGGTGGCCTAAGAGAGCAAGGGAAGGAAGTGAGTTGGGACAGA--GC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681522 48 - 171882078 GGCACTGGTGGGCTAAGGGAGCAAGGGAAGGAAGTGAGCTGGGACAGA----
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138170 48 +  25972781 GGCACTGGTGGGCTAAGGGAGCAAGGGAAGGAAGTGAGCTGGGACAGA----
i macNem1.NW_012017243v1       I 31 C 0
s cerAty1.NW_012001098v1          103065 49 -   1025902 GGCACCGGTGGGCTAAGGGAGCAA-GGAAGGAAGTGAGCTGGGGCAGAGC--
i cerAty1.NW_012001098v1       C 0 I 5
s chlSab2.chrUn_KE147541v1         87732 47 -    811265 GGCACCAGTGGGCTAAGGGAGCAA-GGAAGGAAGTGAGCTGGGGCAGA----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          168607 48 +   1230721 GGCACCGCTGGGCTAAGGGAGGAAGGGAAGGAAGTGAGCTGGGGCCGA----
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1            6842 85 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=13149.000000
s hg38.chrX_KI270880v1_alt         33343 25 +    284869 CCCGTGGAATATCCACAGGCAAAGA
s panTro5.chrX                    133356 25 + 155549662 CCCGTGGAATATCCACAGGCAAAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69106 25 +    105888 CCCGTGGAATATCCACAGGCAAACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102311 25 +    417917 CCCGTGGAATATCCACAGGCAAACA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681570  7 - 171882078 ------------------GCAAACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138218  7 +  25972781 ------------------GCAAACC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         87779  7 -    811265 ------------------GCAAACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1            6842 85 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103114  5 -   1025902 I
e colAng1.NW_012115411v1          168655  0 +   1230721 C
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=122357.000000
s hg38.chrX_KI270880v1_alt         33368 36 +    284869 CACTTCACACAAACTGAATACCAGGGGATCCCAGCC
s panTro5.chrX                    133381 36 + 155549662 CACTTCACACAAACTGAATACCAGGGGATCCCAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69131 36 +    105888 CACTTCACACAAACTGAATACCAGGGGATCCCAGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102336 36 +    417917 CACTTCACACAAACTGAATACCAGGAGATCCCAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681577 36 - 171882078 CACTTCACACACACTGAATACCGGGGGATCCCAGCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138225 36 +  25972781 CACTTCACACACACTGAATACCGGGGCATCCCAGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          103119 36 -   1025902 CACTTCACACACACTGAATAGCGGGGGATCCCAGCC
i cerAty1.NW_012001098v1       I 5 I 2523
s chlSab2.chrUn_KE147541v1         87786 34 -    811265 CACTT--CACACACTGAATACCGGGGGATCCCAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            6927 36 -    350446 CACTTCACACACACTGAATAGTGGGGGATCCCAGCC
i manLeu1.NW_012108508v1       I 85 C 0
s colAng1.NW_012115411v1          168655 31 +   1230721 ----TCACACAAACTGAATACCGCGG-ATCCCAGCC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=132659.000000
s hg38.chrX_KI270880v1_alt         33404 46 +    284869 CGAAGGGTGAAAGGCCAAACAGCGGCCCCTCCTGGAAGGAAACGAG
s panTro5.chrX                    133417 45 + 155549662 CGAAGGGTGAAAGGCCAAACAGCGGCCC-TCCTGGAAGGAAACGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69167 45 +    105888 CGAAGGGTGAAAGGCCAAACAGCGGCCT-TCCTGGAAGGAAACGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102372 45 +    417917 CGAAGGGTGAAAGGCCAAACAGCGGCCC-TCCTGGAAGGAAACGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681613 44 - 171882078 -CGAGGGTGAAAGGCCAGACAGCGGCCC-TCCTGGAAGGAAACGAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138261 44 +  25972781 -CGAGGGTGAAAGGCCAGACAGCGGCCC-TCCTGGAAGGAAACGAG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         87820 45 -    811265 CAAAGGGTGGAAGGCCAGACAGCGGCCC-TCCTGGAAGGAAATGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            6963 45 -    350446 CGCAGGGTGAAAGGCCAGACAGCGGCCC-TCCTGAAAGGAAACGAG
i manLeu1.NW_012108508v1       C 0 I 165
s colAng1.NW_012115411v1          168686 45 +   1230721 CGAAGGGTGAAAGGCCAGACAGCGGCCC-TCCTGGAACAAAACCAG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=134640.000000
s hg38.chrX_KI270880v1_alt         33450 72 +    284869 GGACGCTGCACGGCTCTGCCGCGGCCAAGGTTTCTTTCACGGGCCACACGTGCGCTCCCTGAAGGAAGGGAG
s panTro5.chrX                    133462 72 + 155549662 GGACGCTGCCCGGCTCTGCCGCGGCCAAGGTTTCTTTCACGGGCCACACATACACTCCCTGAAGGAAGAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69212 72 +    105888 GGATGCTGCACGGCTCTGCCGCGGCCAAGGTTTCTTTCACGGGACACACGTGCACTCCCTGAAGGAAGAGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102417 71 +    417917 GGACGCTGCACGGCTCTGTCG-GGCCAAGGTTTCTTTCACGGGACACACGTGCACTCCCTGAAGGAAGAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681657 62 - 171882078 ----------AGGCTCTGCCGTGGCCAGGGTTTCTTGAACGGGGCACACGTGCACCCCCTGAAGGAAGAGAG
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          138305 62 +  25972781 ----------AGGCTCTGCCGTGGCCAGGGTTTCTTGAACGGGGTACACGTGCACCCCCTGAAGGAAGAGAG
i macNem1.NW_012017243v1       C 0 I 2
s chlSab2.chrUn_KE147541v1         87865 62 -    811265 ----------AGGCTCTGCCGTGGCCAGGGTTTCTTGAACGGGGCACACGTGTACCCCCTGAAGGAAGAGAG
i chlSab2.chrUn_KE147541v1     C 0 I 101
s colAng1.NW_012115411v1          168731 62 +   1230721 ----------AGGCTCTGTCATGGCCAGGGTTTCTTGAACGGGGCACATGTGAACCCCCTGAAGGAAGAGAG
i colAng1.NW_012115411v1       C 0 I 2
e manLeu1.NW_012108508v1            7008 165 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=98733.000000
s hg38.chrX_KI270880v1_alt         33522 66 +    284869 CA--CCGCTGCACCGCCCCAGCGCAGGACTCAGGGTCAGCTACCGGCACGGTGAACACCATGACAGGA
s panTro5.chrX                    133534 66 + 155549662 CA--CCGCTGCACCGCCCCAGCACGGGACTCAGGGTCAGCTACCGGCACGGTGAACACCATGACAGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69284 68 +    105888 CGGCCCGCTGCACCGCCCCAGCGCAGGACTCAGGGTCAGCTACCAGCACGGTGAACACCATGACAGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102488 66 +    417917 CA--CCGCTGCACCGCCCCAGCGCAGGACTCAGGGTCAGCTACCAGCACGGTGAACACCATGACAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681721 66 - 171882078 --GCCAGCTgccccgccccggcccgggactccggctcagcgcccggcACGGTGAACAGAATGACAGGA
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          138369 66 +  25972781 --GCCAGCTgccccgccccggcccgggactccggctcagcgcccggcACGGTGAACAGAATGACAGGA
i macNem1.NW_012017243v1       I 2 I 9
s colAng1.NW_012115411v1          168795 66 +   1230721 --GCCAGCTGCCCCGCCCCGGCCCGGGACTCAGGCTCAGCGCCCGGCACGGTGAGCACAATGACAGGA
i colAng1.NW_012115411v1       I 2 I 35
e manLeu1.NW_012108508v1            7008 165 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         87927 101 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=30594.000000
s hg38.chrX_KI270880v1_alt         33588 77 +    284869 CATGACACAGAGGGAGAAATGTCTCTGCAAGGCGAGATTCTGACGAGGGACTCAGAGGCAGAATTTTAA-GCATCAGT
s panTro5.chrX                    133600 77 + 155549662 CATGACACAGAGGGAGAAATGTCTCTGCCAGGCGAGATTCTGACGAGGGACTCAGAGGCAGAATTTTAA-GCATCAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69352 77 +    105888 CATGACACAGAGGGAGAAATGTCTCTGCAAGGCGAGATTCTGACGAGGGACTCAGAGGCAGAATTTTAA-GCATCAGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102554 78 +    417917 CATGACGCAGAGGGAGAAATGTCTCTGCAAGGCGAGATTCTGATGAGGGACTCAGAGGCAGAATTTTAAGGCATCAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681787  9 - 171882078 -----------------GAAGCCACC----------------------------------------------------
i macFas5.chr7                 C 0 C 0
e manLeu1.NW_012108508v1            7008 165 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         87927 101 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          168861 35 +   1230721 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          138435  9 +  25972781 I

a score=29990.000000
s hg38.chrX_KI270880v1_alt         33665 27 +    284869 GAGAAAGAGGCCCGAACACGACCGAGT--
s panTro5.chrX                    133677 27 + 155549662 GAGAAACAGGCCCGAACACGACCGAGT--
i panTro5.chrX                 C 0 I 2
s panPan2.chrUn_NW_014024225v1     69429 27 +    105888 GAGAAACAGGCCCGAACACGACCGAGT--
i panPan2.chrUn_NW_014024225v1 C 0 I 2
s gorGor5.CYUI01015925v1          102632 27 +    417917 GAGAAAGAGGCCCGAACACGACCGAGT--
i gorGor5.CYUI01015925v1       C 0 I 2
s macFas5.chr7                 171681796 29 - 171882078 GAGAAAGAGGCCCAAACACGACAGAGCCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138444 29 +  25972781 GAGAAAGAGGCCCAAACACGACAGAGCCC
i macNem1.NW_012017243v1       I 9 C 0
e manLeu1.NW_012108508v1            7008 165 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         87927 101 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          168861 35 +   1230721 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=750.000000
s hg38.chrX_KI270880v1_alt         33692 1 +    284869 G
s panTro5.chrX                    133706 1 + 155549662 G
i panTro5.chrX                 I 2 C 0
s panPan2.chrUn_NW_014024225v1     69458 1 +    105888 G
i panPan2.chrUn_NW_014024225v1 I 2 C 0
s gorGor5.CYUI01015925v1          102661 1 +    417917 G
i gorGor5.CYUI01015925v1       I 2 C 0
s macFas5.chr7                 171681825 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138473 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1            7173 1 -    350446 G
i manLeu1.NW_012108508v1       I 165 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         87927 101 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          168861 35 +   1230721 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=132139.000000
s hg38.chrX_KI270880v1_alt         33693 62 +    284869 GACATGCACTGCCCTCCGGAGAGGGGTGCACGGTGGCC-GTAGACAAGGGGAAGCG--CCCAGCA
s panTro5.chrX                    133707 62 + 155549662 GACATGCGCTGCCCTCCGGAGAGGGGTGCACGGCGGCC-GTAGACAAGGGGAAGCG--CCCAGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69459 62 +    105888 GACATGCGCTGCCCTCTGGAGAGGGGTGCACGGCGGCC-GTAGACAAAGGGAAGCG--CCCAGTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102662 62 +    417917 GACATGCACTGCCCTCCGGAGAGGGGTGCACGGCGGCC-GTAGACAAGGGGAAGCG--CCCAGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681826 65 - 171882078 GACGTGCACTGCCCTCCAGAGAGGGGCGCACGACGGCCGGCAGACAAGGGGGAGCGCGCCCGGCA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138474 65 +  25972781 GACGTGCACTGCCCTCCAGAGAGGGGCGCACGACGGCCGGCAGACAAGGGGGAGCGCGCACGGCA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         88028 65 -    811265 GACGTGCACTGCCCTCCAGAGAGGGGCGCACGACGGCCGGCAAACAAGGGGGAGCGCACCCGGCA
i chlSab2.chrUn_KE147541v1     I 101 C 0
s manLeu1.NW_012108508v1            7174 65 -    350446 GACGTGCACTGCCCTCCAGAGAGGGGCGCACGACGGCCGGCAGACAAGGGGGAGCGTGCCCGGCA
i manLeu1.NW_012108508v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          168861 35 +   1230721 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=160155.000000
s hg38.chrX_KI270880v1_alt         33755 52 +    284869 CTGGCGCCGGCGAGGGCAGGGTTCACGGGGCATGGAGAGGTGGCAACAAGAA
s panTro5.chrX                    133769 52 + 155549662 CTGGCACTGGCGAGGGCGGGGTTCACGGGGCACGGAGAGGTGGCAACAAGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69521 52 +    105888 CTGGCGCTGGCGAGGGCAGGGTTCACGGGACACGGAGAGGTGGCAACAAGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102724 52 +    417917 CTGGCGCTGGCGAGGGCAGGGTTCACGGGGCACGGAGAGGTGGCAACAAGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171681891 52 - 171882078 CTGGCGCTGGTGAGGGCAGGGTTCACGGGGCACGCAGCGGTGGCAACACGAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138539 52 +  25972781 CTGGCGCTGGTGAGGGCAGGGTTCACGGGGCACGGAGCGGTGGCAACACAAG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         88093 52 -    811265 CTGGCGCTGGCGAGGGCAGGGTTCACGGGGCACGGAGCGGTGGCAACAGGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7239 52 -    350446 CTGGCGCTGGCGAGGGCAGGGTTCACGGGGCACGGAGCGGTGGCAACACGAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          168896 52 +   1230721 CTGGCGCTGGCAAGGGCAGGGTTCACGGGGCACGGAGAGGTGGCAACAAGAG
i colAng1.NW_012115411v1       I 35 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     24071 436 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=488864.000000
s hg38.chrX_KI270880v1_alt         33807 145 +    284869 CATGACACGCGCGGCTGAGACAAAAAGGACTGAAGACGCCAGGTCCCGCGAGGCTGCCAGGCAGCTGGGTGTCCTCCGCGTTGCTGGGGGAACTGGGACGCCACGCAGCTGCC-GGGAAAGCGGCCCACGGGGCGGCTGAGCGTAA
s panTro5.chrX                    133821 145 + 155549662 CATGACACGCGCGGCTGAGACAAGAAGGACTGAAGACGCCAGGTCCCGCGAGGCTGCCAGGCAGCTGGGTGTCCTCTGCGTCGCTGGGGGAACTGGGACGCCGCGCGGCTGCC-GGGAAAGCGGCCCACGGGGCGGCTGAGCATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69573 145 +    105888 CATGACACGCGCGGCTGAGACAAGAAGGACTGAAGACGCCAGGTCCCGCGAGGCTGCCAGGCAGCTGGGCGTCCTCCGCGTTGCTGGGGGAACTGGGACGCCGCGCAGCTGCC-GGGAAAGCGGCCCACGGGGCGGCTGAGCATAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102776 146 +    417917 TATGACACGCGCGGCTGAGACAAAAAGGACTGAAGACGCCAGGCCCCGCGAGGCTGCCAGGCAGCTGGGTGTCCTCCGCGTTGCTGGGGGAACCGGGACGCCGCGCAGCTGCCGGGGAAAGCAGCCCATGGGGCGGCTGAGCATAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24507 145 + 141252148 CATGACACGCGCGGCTGAGACAAAAAGGACGGAAGACGCCAGGTCCCGCAAGGCTGCCAGGCAGCTGGGTGTCCTCGGCGTTGCTGGGGGAACTGGGACACTGCGCAGCTGCC-GGGAAAGCGGCTCACAGGGCGGCTGAGCATAA
i nomLeu3.chrX                 I 436 C 0
s macFas5.chr7                 171681943 139 - 171882078 CACGAGA--CGCGGCTGAGTCAGAAAGGACTGAAGATGCCAGGTCGGGCAAGGCTGCCAGGCAGCCGGGCATCC---GCGTTGCTGGGAGAACCGGGACGCCGCACAGCTGCC-GGGAAAGTGGACCACAGGGGGGCTGAGCATA-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          138591 140 +  25972781 CACGAGA--CGCGGCTGAGTCAGAAAGGACTGAAGATGCCAGGTCGGGCAAGGCTGCCAGGCAGCTGGGCGTCC---GCGTTGCTGGGAGAACCGGGACGCCGCACAGCTGCC-GGGAAAGTGGACCACAGGGGGGCTGAGCATAA
i macNem1.NW_012017243v1       C 0 I 92
s chlSab2.chrUn_KE147541v1         88145 140 -    811265 CACGACA--CGCGGCTGAGACAGAAAGGACTGAAGATGCCAGGTCGGGCAAGGCTGCCAGGCAGCCGGGCGTCC---GCGTTGCTGGAGGAACCAGGACGCCGCACAGCTGCC-GGGAAAGTGGCCCACAGGGTGGCTGAGCATAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7291 140 -    350446 CACGACA--CGCGGCTGAGACAGAAAGGACTGAAGATGCCAGGTCGGGCAAGGCTGCCAGGCAGCCGGGCGTCT---GCGTTGCTGAGGGAACCTGGACGCCACACAGCTGCC-GGGAAAGCGGCTCTCAGGGGGGCTGAGCATAA
i manLeu1.NW_012108508v1       C 0 I 88
s colAng1.NW_012115411v1          168948 140 +   1230721 CAGGACA--CGCGGCTGAGACAGAAAGGCCTGAAGATGCCAGGTCGTGCAAGGCTGCCAGGCAGCCGGGCGTCC---GCGTTGCTGGGGGAACCAGGACGCCGCACAGCTGCC-GGGAAAGCGGCCCACAGGGTGGCTGAGCCTAA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=2066.000000
s hg38.chrX_KI270880v1_alt         33952 3 +    284869 AGC
s panTro5.chrX                    133966 3 + 155549662 AGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69718 3 +    105888 AGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102922 3 +    417917 AGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24652 2 + 141252148 AA-
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171682082 3 - 171882078 agc
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         88285 3 -    811265 GGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          169088 3 +   1230721 GGC
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1            7431 88 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          138731 92 +  25972781 I

a score=10260.000000
s hg38.chrX_KI270880v1_alt         33955 5 +    284869 CCCGT
s panTro5.chrX                    133969 5 + 155549662 CCCGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69721 5 +    105888 CCCGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102925 5 +    417917 CCCGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24654 5 + 141252148 CTTGT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171682085 5 - 171882078 cccga
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1         88288 4 -    811265 -CCGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7519 5 -    350446 CCCGA
i manLeu1.NW_012108508v1       I 88 C 0
s colAng1.NW_012115411v1          169091 5 +   1230721 CCCGA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macNem1.NW_012017243v1          138731 92 +  25972781 I

a score=349643.000000
s hg38.chrX_KI270880v1_alt         33960 104 +    284869 GGCCCGGCCAGGACATCTGTC-----------------------------------------CTCCCAGAAGCACACCAGTGGGAAGAGGGCCCGTGCCCGTGAGAGCCTGCACGGATGGGGACGTCGGCTGCTTGGTT--CACGGT
s panTro5.chrX                    133974 104 + 155549662 GGCCCGGCCAGGGCATCCGTC-----------------------------------------CTCCCAGAAGCACACCAGTGGGAAGAGGGCCCGTGCCCGTGAGAGCCTGCACGGATGGGGACGTCGGCTGCTTGGTT--CACGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69726 104 +    105888 GGCCCGGCCAGGGCATCCGTC-----------------------------------------CTCCCAGAAGCACACCAGTGGGAAGAGGGCCCGTGCCCGTGAGAGCCTGCACGGATGGGGACGTCGGCTGCTTGGTT--CACGGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          102930 104 +    417917 GGCCCGGCCAGGACATCCGTC-----------------------------------------CTCCCAGAAGCACACCAGTGGGAAGAGGGCCCATGCCCGTGAGAGCCTGCACGGATGGGGACGTCGGCTGCTTGGTT--CACGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24659 103 + 141252148 GGGCCAGCCAGGACATCCGTC-----------------------------------------CTCTCAGAAGCACCCCAGTGGGAAGAGGGCCCGTGCCCGTGACAGCCTGCACGGAT-GGGACGTCGGCTGCTTGATT--CACGGT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171682090 144 - 171882078 ggcccggccggggcatccgtctcccagaagcatgaggcccgaggcccgGCCGGGGCATCCGTCTCCCAGAAGCACACCAGCGGGAAGATGGCCGATGCCCGTGACAGCC-GCACGGATGCGGACGCCGGCTGCCTGATG--CACGGT
i macFas5.chr7                 C 0 M 12162
s macNem1.NW_012017243v1          138823 103 +  25972781 ggcccgGCCGGGGCATCCGTC-----------------------------------------CTCCCAGAAGCACACCAGCGGGAAGACGGCCGATGCCTGTGACAGCC-GCACGGATGCGGACGCTGGCTGCCTGATG--CACGGT
i macNem1.NW_012017243v1       I 92 C 0
s chlSab2.chrUn_KE147541v1         88292 103 -    811265 GGCCCGGCCGGGGCATCCGTC-----------------------------------------CTCCCAGAAGCACACCAGCGGGAAGACGGCCGATGCCCGTGACAGCC-GCACGGATGTGGACGTCGGCTGCTTGATG--CACGGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7524 104 -    350446 GGCCCGGCCGGGGCATCCGTC-----------------------------------------CTCCCAGAAGCATACCAGCGGG-GGAGGGCCGATGCCCGTGACAGCC-GCACGGATGCGGACGCCGGCTGCCTGATGCACACGGT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          169096 103 +   1230721 GGCCCGGCCGGGGCATCCGTC-----------------------------------------CTCCCAGAAGCACAGCAGTGGGAAGAGGGCCGATACCCGTGACAGCC-ACACGGATGGGGACGTCGGCTGCTTGATT--CACGGT
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I

a score=51085.000000
s hg38.chrX_KI270880v1_alt         34064 23 +    284869 G-CCCCAGGCGAGAGGAGTCGGAC
s panTro5.chrX                    134078 23 + 155549662 G-CCCCAGGCGAGAGGAGCCGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69830 23 +    105888 G-CCCCAGGCGAGAGGAGCCGGAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103034 23 +    417917 G-CCCCAGGCGAGAGGAGCCGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24762 23 + 141252148 G-CTCCAGGGGAGAGGAGCCGGAC
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          138926 22 +  25972781 G-CCCCGGG-GAGAGAAGCCTGAT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         88395 23 -    811265 GCCCCCGGG-GAGAGGAGCCCGAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7628 22 -    350446 G-CCCCGGG-GAGAGGAACCCGAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          169199 22 +   1230721 G-CCCCGGG-GAGAGGAGCCGGAA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e rheMac8.chrX                     93184 1461 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=930974.000000
s hg38.chrX_KI270880v1_alt         34087 277 +    284869 GCCAGAGCAGGGACTGGAGGAATAAACTG-TGGCAGAGTCGTCCTGACAGGTGCAGGGCGGGAGTGACCACGGGGGGGCGTGGGGGACTGCGGAGGGGGCTGCGCGCCACAGCGGGGATTGCAGTGCTGCTATGGGAAAGGACGCGCTCCGGCTGGCGCACCTGTGGATGACTTGAAGGCAGCCGTGTGCGGCTGGAGGGGCCGGGCCCCGCAGGACGCACAGGCACGTGCCGGCTCCCGTGATGAGGATCCTGACGGAGCTCAGCCCTGGCCACCTG
s panTro5.chrX                    134101 276 + 155549662 GCCAGAGCGGGGACTGGAGGAATAAACTG-TGGCAGAGTCGTCCTGACAGGTGCAGGGCGGGAGTGACCACGGGGGG-CGTGGGGGACTGCGGAGGGGGCTGCGCGCCACAGCGGGGATTGCACTGCGGCTATGGGAAAGGATGCTCTCCGGCTGGCGCACCTGTGGATGACTCGAAGGCAGCCATGTGCAGCTGGAGGGGCCAGGCCCCGCAGGACGCACAGGCACGTGCCGGCTCCCGTGATGAGGATCCTGACGGAGCTCAGCCCTGGCCACCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     69853 276 +    105888 GCCAGAGCGGGGACTGGAGGAATAAACTG-TGGCAGAGTCGTCCTGACAGGTGCAGGGCGGGAGTGACCACGGGGGG-CGTGGGGGACTGCGGAGGGGGCTGCGCGCCACAGCAGGGATTGCACTGCGGCTATGGGAAAGGATGCTCTCCGGCTGGCGCACCTGTGGATGACTCGAAGGCAGCCATGTGCAGCTGGAGGGGCCAGGCCCCGCAGGACGCACAGGCACGTGCCGGCTCCCGTGATGAGGATCCTGACGGAGCTCAGCCCTGGCCACCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103057 275 +    417917 GTGAGAGCAGGGACTGGAGGAATAAACTG-TGGCAGAGTCGTCCTGACAGGTGCAGGGCGGGAGTGACCACGGGAGG-CGTGGGGGACTGCGGA-GGGGCTGCGCGCCACAGCGGGGATTGTAGTGCGGCTATGGGAAAGGACGCTCTCTGGCTGGCGCACCTGTGGATGACTCGAAGGCAGCCGTGTGCAGCTGGAGGGGCCGGGCCCTGCAGGACGCACAGGCACGTGCCGGCTCCCGTGATGAGGATCCTGACGGAGCTCGGCCCTGGCCACCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     24785 272 + 141252148 GCCAGAGCAGGGACTGAGGGAATAAACGG-TGGCAGAGTCGGCCTGACAGATGCAGGGCAGGAGTGACCACGGAGGG-CGTGGGGGACTGCGGAGGGGGCGGTGTGCCACAGCGGGGAGTGCAGTGCAGCTGTGGGAAAGGACTCTCTCC----GGTGCCCCTGTGGGTGACTCGAAGGCAGCCGTGTGGAGCGGGAGGGGCCAGGCCCTGCAGGACGCACAGGCACGTGCCAGCTCCCGTGACGAGGATCCTGATGGAGCTCAGCCCTGGCTACCAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     94645 273 + 149150640 GCCAGAGCAGGGGCTGGAGGAATAAACTGACGGCAGCATCATCCGGACAGGTGCGGGGCGGGAGTGACCAC--GGGG-CGTGGGGGGACTTGGA-GGGGCTGCACGCCACAGCACGGCGCGCAGTGCGGCGACGGGAAAAGATGCTATCCGGCTGGTGCACCTGTGGATGACGCGAAGGCAGCCGTGTGGAGC-GGAGGGGCCGGGCCCTGCAGGATGCACAGGCACGTGCCGGCTCCCGTGACGAGGATCCCGAGGGAGCTCAGCCCTGGCCACCTG
i rheMac8.chrX                 I 1461 I 1
s macNem1.NW_012017243v1          138948 275 +  25972781 GCCAGAGCAGGGGCTGGAGGAATAAACTGACGGCAGCGTCGCCCGGACAGGTGCGGGGCGGGAGTGACCACAGGGGG-CGTGGGGGGACTTGGA-GGAGCTGCACGCCACAGCACGGCGCGCAGTGCGGCGACGGGAAAAGATGCTATCCGGCTGGTGCACCTGTGGATGACGCGAAGGCAGCCGTGTGGAGC-GGAGGGGCCGGGCCCTGCAGGACGCACAGGCACGTGCCGGCTCCCGTGACGAGGATCCCGAGGGAGCTCAGCCCTGGCCACCTG
i macNem1.NW_012017243v1       C 0 I 1
s chlSab2.chrUn_KE147541v1         88418 273 -    811265 GCCAGAGCAGGGGCTGGAGGAATAAACTG-TGGCAGCGGCGTCCGGACAGGTGCGGGGCGGGAGTGACCACAGGGGG-CGTGGGGGAACTTGGA-GGGGCTACACGCCACAGCATGGAGCGCAGTGCGGCGACGGGAAAAGATGCTCTCCGGCTGGTGCACCTGTGCATGACGTGAAGGCAGCCGTGTGGAGC-CGGAGGGGC-AGCCCTGCAGGACTCACAGGCACGTGCCGGCTCCCGTGACAAGGATCCTGAGGGAGCTCAGCCCTGGCCGCCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            7650 272 -    350446 GCCAGAGCAGGGGCTGGAGGAATAAACTG-TGGCAGTGGCGTCCGGACAGGTGCGGGGCGGGAGTGACCACAGGGGG-CGT-GGGGAACTTGGA-GGGGCTGAACGCCACAGCACGGCGCGCAGTGCGGCGACGGGAAAAGATGCTCTCCGGCTGGTGCACCTGTG-GTTACGCGAAGGCAGCCATGTGGAGC-AGAGGGGTCGGGCCCTGCAGGACGCACAGGCACGTGCCGGCTCCCGTGACGAGGATCCCGAGGGAGCTCAGCCCTGGCCGCCTG
i manLeu1.NW_012108508v1       C 0 I 2
s colAng1.NW_012115411v1          169221 274 +   1230721 GCCAGAGCAGGGGCTGGAGGAATAAACTG-TGGCAGCGTCGTCCGGACAGGCGCGGGGCAGGAGTGACCGCA-GGGG-CCTGGGGGAACGTGGA-GGGGCTGCACGCCACCGCACGGAGAGCAGTGCAGCGACGGGAAAAGGTGCTCTCCGGCCGGTGCACCTGTGGATGACGCGAAGGCAGCCGTGTGGAGCTGGAGGGGCCAGGCCCTGCAGGACGCACAGGCACGTGCCGGCTCCCGTGACGAGAATCCTGAGGGAGCTCAGCCCTGGCCACCTG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=425345.000000
s hg38.chrX_KI270880v1_alt         34364 163 +    284869 GAAGGGCGTCCCGGTGCGGTGGGAGGGAACGAGCCGGGTGC--AGCA-----------CCGGGTCCTTGGGCTAGTGCTAGTCCCACGCTTTTGACCTCATGAGACCATTCTGGCTCACAGGCCGTGCAGGTTTCAAACCCCAAGCGCTCAACACCCAGGGATGGGGGGATGTGTG
s panTro5.chrX                    134377 163 + 155549662 GAAGGGCGTCCCGGTGCGGTGGGAGGGAACGAGCCGGGTGC--AGCA-----------CCGGGCCCTCGGACTGCTGCTAGTCCCACGCTTTTGACCTCATGAGACCATTCTGGCTCACAGGCCGTGCAGGTTTCAAACCGCAAGCGCTCAACACCCAGGGATGGGGGGATGTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70129 163 +    105888 GAAGGGCGTCCCGGTGCGGTGGGAGGGAACGAGCCGGGTGC--AGCA-----------CCGGGCCCTCGGACTGCTGCTAGTCCCACGCTTTTGACCTCATGAGACCATTCTGGCTCACAGGCCGTGCAGGTTTCAAACCGCAAGCGCTCAACACCCAGGGATGGGGGGATGTGTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103332 163 +    417917 GAAGGGCATCCCGGTGCGGTGGGAGGGAACGAGCCGGGTGC--AGCA-----------CCGGGCCCTCGGGCAGGTGCTAGTCCCACGCTTTTGACCTCATGAGACCATTCTGGCTCACAGGCCGGGCAGGTTTCAAACCCCAAGCGCTCAACACCCAGGGATGGGGGGATGTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     25057 154 + 141252148 GAAGGGTGCCCT-------------GGAATGAGCTGGGTGC--AGCACTGGTGCACCCCTGGGCCCTCGGGCTGGTGCTAGTCCCACGCTTTTGACCTCATCAGACGGTTCTGGCTCACGGGCCGTGCAGATTT-------CAAGCACTCAACACCCAGGGACGGGGGGATGTGTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     94919 165 + 149150640 GAAGGGTGCCGTGGTGCAGCGGGAGGGAACGAGCTGGGTGCCAGGCA-----------CTGGGCCCTTGGGCTGGTGCTGGTCTCATGCTTCTGACCTCATCAGGCCGTTCTGGCTCACGGGCCATGCAGATTTCAGACCCCAAGCACTCAACACCCAGGAATGTGGGGATGTGTC
i rheMac8.chrX                 I 1 C 0
s macNem1.NW_012017243v1          139224 165 +  25972781 GAAGGGTGCCGTGGTGCAGCGGGAGGGAACGAGCTGGGTGCCGGGCA-----------CTGGGCCCTTGGGCTGGTGCTGGTCTCACGCTTCTGACCTCATCAGGCCGTTCTGGCTCACGGGCCATGCAGATTTCAGACCCCGAGCACTCAACACCCAGGAATGTGGGGATGTGTC
i macNem1.NW_012017243v1       I 1 C 0
s chlSab2.chrUn_KE147541v1         88691 164 -    811265 -AAGGGTGCCCTGGTGCGGCGGGAGGGAACGAgctgggtgctgggca-----------ctgggcccttgggctgctgctggTCTCACGCTTCTGACCTCATCAGGCCGTTCTGGCTCACGGGCCATGCAGATTTCAGACCCCAAGCGCTCAACACCCAGGAATGTGGGGATGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          169495 164 +   1230721 GAAGGGTGCC-TGGTGCGGCGGGAGGGAACGAGCTGGGGGCCGGGCC-----------CTGGGCCCTTGGGCTGGTGCTGCTCTCACGCTTCTGACCTCATCAGGCCGTTCTGGCTCCCGGGCCATGCAGATTTCAGACCCCAAGCACTCGACACCCAGGAAGGTGGGGCTGTGTC
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1            7922   2 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=304005.000000
s hg38.chrX_KI270880v1_alt         34527 83 +    284869 AGCCTTCACATCTGTGCTCCTCACCGCGTGCAAGACACACCGTCATGACCCGGTGGCAGGGATGGAGCATCAGATCTATCCAG
s panTro5.chrX                    134540 83 + 155549662 AGCCTTCACATCTGTGCTCCTCACCGCGTGCAAGACACACCGTCATGACCCAGTGGCAGGGATGGAGCATCAGATCTATCCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70292 83 +    105888 AGCCTTCACATCTGTGCTCCTCACCGCGTGCAAGACACACCGTCATGACCCAGTGGCAGGGATGGAGCATCAGATCTATCCAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103495 83 +    417917 AGCCTTCACATCTGTGCTCCTCACCGTGTGCAAGACTCACCGTCATGACCCACTGGCAGGGATGGAGCATCAGATCTATCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     25211 83 + 141252148 AGCCTTCACATCTGTGCTCCTCACTCTGTGCAAGACACTCCGTAATGACCCGGTGGCAGGGATGGAGCATCAAATCTATCCAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     95084 83 + 149150640 AGCCTTCACATCTGTGCTCCTCATGGTGTGCAAGACACACCGTAATGACCTGGTGGCACGGACGGAGCATCAGATGTATCCAG
i rheMac8.chrX                 C 0 I 1504
s macNem1.NW_012017243v1          139389 83 +  25972781 AGCCTTCACATCTGTGCTCCTCATGGTGTGCAAGACACACCGTAATGACCTGGTGGCACGGACGGAGCATCAGATGTATCCAG
i macNem1.NW_012017243v1       C 0 I 3777
s chlSab2.chrUn_KE147541v1         88855 83 -    811265 AGCCTTCACATCTGTGCTCCTCACGGTGTGCAAGACACACCGCAATGACCAGGTGGCACGGACGGAGCATCAGATGTATCCAG
i chlSab2.chrUn_KE147541v1     C 0 I 971
s manLeu1.NW_012108508v1            7924 83 -    350446 AGCCTTCACATCTCTGCTCCTCACGGTGTGCAAGACACACCACAATGACCGGGTGGCACGGACGGAGCATCAGATGTATCCAG
i manLeu1.NW_012108508v1       I 2 I 809
s colAng1.NW_012115411v1          169659 83 +   1230721 AGCCTTCACATCTGTGCTCCTCACGGTGTGCAAGACACGCCGTAATGACCTGGTGGCACGGACGGAGCATCAGATGTACCCAG
i colAng1.NW_012115411v1       C 0 M 5258
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=20581.000000
s hg38.chrX_KI270880v1_alt         34610 37 +    284869 CCGTGCAGGATATAGCGTCTCATGTGTCCAGACCTGC
s panTro5.chrX                    134623 37 + 155549662 CCGTGCAGGCTATAGCGTCTCATGTGTCCAGACCTGG
i panTro5.chrX                 C 0 I 29824
s panPan2.chrUn_NW_014024225v1     70375 37 +    105888 CCGTGCAGGCTATAGCGTCTCATGTGTCCAGACCTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103578 35 +    417917 CCCTACGGGC--TAGCGTCTAGTGTGTCCAGACCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     25294 35 + 141252148 TCCTACAGGC--CGGAGTCAGATGTATCCAGACCTAC
i nomLeu3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1386.000000
s hg38.chrX_KI270880v1_alt         34647 2 +    284869 AG
s panTro5.chrX                    164484 2 + 155549662 AA
i panTro5.chrX                 I 29824 C 0
s panPan2.chrUn_NW_014024225v1     70412 2 +    105888 AG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103613 2 +    417917 AG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     25329 2 + 141252148 AG
i nomLeu3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=4272.000000
s hg38.chrX_KI270880v1_alt         34649 8 +    284869 GCTGGAGT
s panPan2.chrUn_NW_014024225v1     70414 8 +    105888 GCTGGAGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103615 8 +    417917 GCTGGAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     25331 8 + 141252148 GCCGGAGT
i nomLeu3.chrX                 C 0 I 1099
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    164486 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=7007.000000
s hg38.chrX_KI270880v1_alt         34657 29 +    284869 GCAGTGTGTGATCACAGCGTGATCCATtt
s panPan2.chrUn_NW_014024225v1     70422 29 +    105888 GCAGTGTGTGATCACAGCGTGATCCATGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103623 29 +    417917 GCAGTGTGTGATCACAGCGTGATGCATTT
i gorGor5.CYUI01015925v1       C 0 I 1
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    164486  0 + 155549662 C
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-63.000000
s hg38.chrX_KI270880v1_alt         34686 3 +    284869 tta
s panPan2.chrUn_NW_014024225v1     70451 3 +    105888 TAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    164486 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          103652 1 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt         34689 157 +    284869 ttctacttgtttttcgagacacggtcttgctgttgcccaggctggagtgcagtgtgtgatcacagcGTGATCCATttttattctacttgtttttcgagacacggtcttgctgttgcccaggctggactgcagtgtgtgatcacagcGTGATCCATtt
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    164486   0 + 155549662 C
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          103652   1 +    417917 I
e panPan2.chrUn_NW_014024225v1     70454   0 +    105888 C

a score=3495.000000
s hg38.chrX_KI270880v1_alt         34846 43 +    284869 ttattctacttgtttttcgagacacggtcttgctgttgcccag
s gorGor5.CYUI01015925v1          103653 43 +    417917 TTATTCGACttgttttttgagacacggccttgctgttgcctag
i gorGor5.CYUI01015925v1       I 1 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    164486  0 + 155549662 C
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     70454  0 +    105888 C

a score=14059.000000
s hg38.chrX_KI270880v1_alt         34889 55 +    284869 gctggagtgcagtgtgtgatcacagcGTGATCCAttttttattctacttgttttt
s panTro5.chrX                    164486 55 + 155549662 GCTGGAGTGCAGTGTGTGATCACAGCGTGATCCAttttttattttacttgttttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          103696 55 +    417917 gctggagtgcagtgtgtgatcacagcGTGATGCATTTATTATTCGACttgttttt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     70454  0 +    105888 C

a score=10524.000000
s hg38.chrX_KI270880v1_alt         34944 24 +    284869 cgagacacggtcttgctgttgccc
s panTro5.chrX                    164541 24 + 155549662 ccagacacggtcttgctgttgccc
i panTro5.chrX                 C 0 T 29905
s panPan2.chrUn_NW_014024225v1     70454 23 +    105888 Cgagacgcggtcttgctgttgcc-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103751 24 +    417917 tgagacacggccttgctgttgccc
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=13260.000000
s hg38.chrX_KI270880v1_alt         34968 23 +    284869 aggctggagtgcagtgtgtgatc
s panTro5.chrX                    134660 23 + 155549662 AGGCTGGAGTGCAGTGTGTGATC
i panTro5.chrX                 T 29905 C 0
s panPan2.chrUn_NW_014024225v1     70477 23 +    105888 aggctggagtgcagtgtgtgatc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103775 23 +    417917 aggctggagtgcagtgtgtgatc
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e nomLeu3.chrX                     25339 1099 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=24313.000000
s hg38.chrX_KI270880v1_alt         34991 42 +    284869 acagcGTGATCCAttttttattctacttgtttttcgagacac
s panTro5.chrX                    134683 42 + 155549662 ACAGCGTGATCCAttgtttattttatttgtttttcgagacgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70500 41 +    105888 acagcGTGATCCAtt-tttattctacttgtttttcgagacac
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103798 42 +    417917 acagcGTGATCCAttttttattttacctttttttcgagacac
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26438 32 + 141252148 ACAGGGTGATCCCttttttg----------tttttgagtcac
i nomLeu3.chrX                 I 1099 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     95167 1504 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=3000.000000
s hg38.chrX_KI270880v1_alt         35033 2 +    284869 gg
s panTro5.chrX                    134725 2 + 155549662 gg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70541 2 +    105888 gg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103840 2 +    417917 gg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26470 2 + 141252148 gg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     96671 2 + 149150640 gg
i rheMac8.chrX                 I 1504 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          103155 2523 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=197555.000000
s hg38.chrX_KI270880v1_alt         35035 114 +    284869 tcttgctgttgcccaggctggagtgcagtgtgtgatcacagctcagtgcagtctcaacttcacgggctcaagcaatcctcccaccttagcctcccaagtagctggcaccacagg
s panTro5.chrX                    134727 114 + 155549662 tcttgctgttgctcaggctggagtgcagtgtgtgatcacagctcagtgcagtctcaacttcacgggctcaagcaatcctcccacctcagcctcccaagtagctgggaccacagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70543 114 +    105888 tcttgctgttgcccaggctggagtgcagtgtgtgatcacagctcagtgcagtctcaacttcacgggctcaagcaatcctcccacctcagcctcccaagtagctgggaccacagg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103842 114 +    417917 tcttgctgttgcccaggctggagtgcagtgtgtgatcacagctcagtgcagtctcagcttcacgggctcaagcaatcctcccaccttagcctcccaagtagctgggaccacagg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26472 114 + 141252148 tcttgctgttgcccaggctggagtgcagtgtgtgatcacagctcagtgcggtctcaacttcacgggctcaagcaatcctcccaccttagcctcccaagtagctgggaccacagg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     96673 109 + 149150640 tcttgctgttgcccaggctggagcgcagtgtgtgatccc-gctcagtgcagtctcaacctcacgggctcaag-catcctcccaccctagc--tccaagtagctggga-cacagg
i rheMac8.chrX                 C 0 I 46
s cerAty1.NW_012001098v1          105678 113 -   1025902 tcttgctgttg-ccaggctggagcgcactgtgtgatcccagctcagtgcagtctgaacctcacgggctcaagccatcctcccaccctagcctcccaagtagctgggaccacagg
i cerAty1.NW_012001098v1       I 2523 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=51265.000000
s hg38.chrX_KI270880v1_alt         35149 51 +    284869 tgcgcgctatcatgcctgggtaatttttt--------taatttctacagtgaagtctca
s panTro5.chrX                    134841 51 + 155549662 tgtgcgctatcatgcctgggtaatttttt--------aaatttctacagtgaagtctca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70657 51 +    105888 tgtgcgctatcatgcctgggtaatttttt--------aaatttctacagtgaagtctca
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          103956 52 +    417917 tgcgcgctatcatgcctgggtaatttttt-------aaaatttctacagtgaagtctca
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26586 51 + 141252148 tgcgcgctatcatgcctgggtaattttaa--------aaatttctacagtgaagtctca
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          105791 57 -   1025902 tgcgtgccaccatgcgtggctatttttttttttttttaattttgtagagtgaagtct--
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1            8007 809 -    350446 I
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     96782 46 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=2865.000000
s hg38.chrX_KI270880v1_alt         35200 2 +    284869 ct
s panTro5.chrX                    134892 2 + 155549662 ct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70708 2 +    105888 ct
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104008 2 +    417917 ct
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26637 2 + 141252148 ct
i nomLeu3.chrX                 C 0 C 0
s manLeu1.NW_012108508v1            8816 2 -    350446 ct
i manLeu1.NW_012108508v1       I 809 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          105848 0 -   1025902 C
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     96782 46 + 149150640 I
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=170870.000000
s hg38.chrX_KI270880v1_alt         35202 81 +    284869 atgttgccgaggctggtctggaacccttggccgcaagccatcctcccgccttggcctctcaaagtgctgggactacaggga
s panTro5.chrX                    134894 81 + 155549662 atgttgccgaggctggtctggaacccttggccgcaagccatcctcccgccttggcctctcaaagtgctgggactacagTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70710 81 +    105888 atgttgccgaggctggtctggaacccttggccgcaagccatcctcccgccttggcctctcaaagtgctgggactacagTGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104010 81 +    417917 atgttaccgaggctggtctggaacccttggccgcaagccatcctcccgccttggcctctcaaagtgctgggactacaggga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26639 81 + 141252148 atgttgcccaggctggtctggaacccttggcctcaagcgatcctcccgccttggcctctcaaaatgctgggactacaggca
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     96828 77 + 149150640 atgttgccc-ggctggtctggaacccttggctccaagccatcctcccgctc--gctctccaaagtgctgggactacaggc-
i rheMac8.chrX                 I 46 C 0
s cerAty1.NW_012001098v1          105848 81 -   1025902 atgttgcccaggctggtctggaacccttgccctgaagccatcctcctgcctcggcctcccaaagtgctgggactacaggcc
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            8818 81 -    350446 atgttgcccaggctggtctggaacccttgccctgaagcgatcctcctgccttagcctcccaaagtgctgggactacaggtc
i manLeu1.NW_012108508v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macNem1.NW_012017243v1          139472 3777 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=297873.000000
s hg38.chrX_KI270880v1_alt         35283 103 +    284869 tgaCACTGCAACCAGAGACAGCTGCACCCCCGGCGTCTGGGGGATGAGAACTGAGC-GGGAGAGTGCTGGGCACACAGTCCCCCCACCACACCAAACCCGAAAA
s panTro5.chrX                    134975 103 + 155549662 TGACACTGCAACCAGAGACAGCTGCACCCCCGGCGTCTGGGGGATGAGAACTGAGC-GGGAGAGTGCCGGGCACACAGTACCCCCACCACACCAAACCCGAAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70791 103 +    105888 TGACACTGCAACCAGAGACAGCTGCACCCCCGGCGTCTGGGGGATGAGAACTGAGC-GGGAGAGTGCCGGGCACACAGTACCCCCACCACACCAAACCCGAAAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104091 103 +    417917 tgaCACTGCAACCAGAGACAGCTGCACCCCCGGCGTCTGGGGGATGAGAACTGAGC-GGGAGAGTGCTGGGCACACAGTCCCCCCACCACACCAAACCTGAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26720 103 + 141252148 tgacactgcaaccggAGACAGCTGCATCCCTGGCGTCTGGGGGATGAGAACTGAGC-GTGGGAGTGCTGGGCACACGGTCCCCCCACCACACCAAACCCGAAAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     96905 101 + 149150640 tgacaccacagccagAGACGACTGCATCCCCGG-GTCTGGGTGATGAG-ACTGAGCGGTGGGAGTGCTGGGCACACAGT-CCCCCACCACACCAAACCCGAAAA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143249 103 +  25972781 TGACACCACAACCAGAGACAGCTGCATCCCCGGCGTCTGGGTGATGAGAACTGAGC-GTGGGAGTGCTGGGCACACAGTCCCCCCACCACAGCAAACCCGAAAA
i macNem1.NW_012017243v1       I 3777 C 0
s cerAty1.NW_012001098v1          105929 103 -   1025902 tgacaccgcAAGCAGAGACAGCTGCATCCCCAGCATCCGGGTGATGAGAACTGAGC-GTGAGAGTGCTGGGCACGCAGTCCCCCCACCACACCAAAGTTGAAAA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            8899 103 -    350446 tgacactgcAAACAGAGACGGCTGCATCCCCGGCGTCTGGGTGATGAGAACTGAGC-GTGGGAGTGCTGGGCACACAGCTCCCCCACCACACCAAACCCGAAAA
i manLeu1.NW_012108508v1       C 0 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e saiBol1.JH378345                114086 5352 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=115010.000000
s hg38.chrX_KI270880v1_alt         35386 42 +    284869 TTACCTCCAAATGAATTAGCTCATAATT----TAAAATAATCCTAA
s panTro5.chrX                    135078 42 + 155549662 TTACCTCCAAATGAATTAGCTCATAATT----TAAAATAATCCTAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70894 42 +    105888 TTACCTCCAAATGAATTAGCTAATAATT----TAAAATAATCCTAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104194 42 +    417917 TTACCTCCAAACGAATTAGCTCATAATT----TTAAAAAATCCTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26823 42 + 141252148 TTACCTCCAAACGAATTAGCTCATCATT----TAAAAAAATCCTGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97006 44 + 149150640 TTACCTCC-AACTAATTAGCTCACAATT-AAAAAAAAAAATCCCGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143352 46 +  25972781 TTACCTCCAAACTAATTAGCTCACAATTAAAAAAAAAAAATCCCGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106032 44 -   1025902 TTACCTCCAAACTAATCAGCTCACAATT--AAAAAAAAAATCCTGA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9002 45 -    350446 TTACCTCCAAACTAATTAGCTCACAATT-TAAAATAAAAATCCTGA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119438 42 +    465904 TCACCTGCAAACTCATTAGCTCACGATT----AAAAAGAATTCTGC
i saiBol1.JH378345             I 5352 C 0
e cebCap1.NW_016107987v1          183827 2068 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=361137.000000
s hg38.chrX_KI270880v1_alt         35428 96 +    284869 AGTA-AATGGAGATAATCAACTCT-AAAATGCAAAAGATACAAAGGAAAGCAGTTTTACCTGAATGTCACAAAATCCTTATGGGAAAGGGAATAAAAC
s panTro5.chrX                    135120 96 + 155549662 AGTA-AATGGAGATAATCAACTCT-AAAATGCAAAAGATACAAAGGAAAGCAGTTTTACCTGAATGTTACAAAATCCTTATTGGAAAGGGAATAAAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     70936 96 +    105888 AGTA-AATGGAGATAATCAACTCT-AAAATGCAAACGATACAAAGGAAAGCAGTTTTACCTGAATGTTACAAAATCCTTATCAGAAAGGGAATAAAAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104236 96 +    417917 AGTA-AATGGAGATAATCAACTCT-AAAATGCAAACGATACAAAGGAAAGCAATTTTACCTGAATGTTACAAAATCCTTATTGGAAAGGGAATAAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26865 96 + 141252148 AGTA-AATGGAGATAATCAATTCT-AAAATGCAAAAGATACAAAGGAAAGCAGTTTTACCTGAATGTTACAAAACCCTTATCGGAAAGGGAATGAAAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97050 97 + 149150640 AGTAGAATGGAGACAATCAACTCC-AAAATGCAAAAGACACAAAGGAAAGGAGTTAATCCTAAATGTTACAAAATCCTTATCTGAAAGGGAGTAACAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143398 96 +  25972781 AGTA-AATGGAGACAATCAACTCC-AAAATGCAAAAGACACAAAGGAAAGGAGTTTATCCTAAATGTTACAAAATCCTTATCTGAAAGGGAGTAACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106076 91 -   1025902 AGTA-AATGGAGACAATCAACTCC-AAAATGCAAAAGATAC-----AAAGGAGTTTATCGTAAATGTTACAAAATCCTTATCTGAAAGGCAGTAACAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9047 91 -    350446 AGTA-AATGGAGATAATCAACTCC-AAAATGCAAAAGATAC-----AAAGGAGTTTATCCTAAATGTTACAAAATCCTTATCTGAAAGGGAGTAACAC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119480 94 +    465904 AGTA-AGTGGAGATGATCAGCTCT-AAAATGCAAA-GATACAAA-GAAAGCAGCTTTTCCTGCGTGTTACAAAATCGTTACCGGGCAGCGAATAAAAC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          185895 96 -    735872 AGTA-AATGGAGATGATCAACTCTAAAAATGCAAA-GATACAAAGGAAAGCAGCTTTTCCTGAATGTTACAAAATCGTTATCGTAGGGGGAATAAAAC
i cebCap1.NW_016107987v1       I 2068 I 320
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=49619.000000
s hg38.chrX_KI270880v1_alt         35524 16 +    284869 ATCAGATACCCTGATC
s panTro5.chrX                    135216 16 + 155549662 ATCAGATACCCTGATC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71032 16 +    105888 ATCAGATACCCTGATC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104332 16 +    417917 ATCAGATACCCTGATC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26961 16 + 141252148 ATCAGATAACCTGATT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97147 16 + 149150640 ACCAGATAACCTGATT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143494 16 +  25972781 ACCAGATAACCTGATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106167 16 -   1025902 ACCGGATAACCTGATT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9138 16 -    350446 ACCGGATGACCTGATT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119574 16 +    465904 AGCAGATGACGTGATT
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          185991 320 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=8488.000000
s hg38.chrX_KI270880v1_alt         35540 7 +    284869 TGACTTT
s panTro5.chrX                    135232 7 + 155549662 TGACTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71048 7 +    105888 TGACTTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104348 7 +    417917 CGACTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26977 7 + 141252148 TGACTTT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97163 4 + 149150640 CGA---C
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143510 6 +  25972781 CGAC-TC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106183 6 -   1025902 TGAC-TC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9154 6 -    350446 TGAC-TC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119590 7 +    465904 TGACGtt
i saiBol1.JH378345             C 0 I 215
s cebCap1.NW_016107987v1          186311 7 -    735872 TGACTTT
i cebCap1.NW_016107987v1       I 320 C 0
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=113634.000000
s hg38.chrX_KI270880v1_alt         35547 39 +    284869 TAAAAGTCTTTTCGTGATCGACACACAGAAAGACCGACT
s panTro5.chrX                    135239 39 + 155549662 TAAAAGTCTTTTCGTGATCGACACACAGAAAGACCGACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71055 39 +    105888 TAAAAGTCTTTTCGTGATCGACACACAGAAAGACCAACT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104355 37 +    417917 T--AAGTCTTTTCGTGATCGACACACAGAAAGACCGACT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     26984 39 + 141252148 TAAAAGTCTTTTCATGATCGACACACGGAAACACCGACT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97167 36 + 149150640 TCAAAGTCTTT---GGGACCACACACAGAAAGACCAACT
i rheMac8.chrX                 C 0 I 14
s macNem1.NW_012017243v1          143516 39 +  25972781 TCAAAGTCTTTTCGGGATCCACACACAGAAAGACCAACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106189 39 -   1025902 TAAAAGTCTTTTCGGGATCCACGCACAGAAAGACCAGCT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9160 39 -    350446 TAAAAGTCTTTTCGGGATCCACGCACAGAAAGACCAGCT
i manLeu1.NW_012108508v1       C 0 C 0
s cebCap1.NW_016107987v1          186318 39 -    735872 TAAAAGCGTTTTCCTGATGGACACACAGAAAGACGCAGT
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                119597 215 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=141599.000000
s hg38.chrX_KI270880v1_alt         35586 59 +    284869 CCTTGTGGGGCCCGGCAACGCGGCGGCACGCCCACC--CGCACGGCCAGGACAGGGAACGA
s panTro5.chrX                    135278 59 + 155549662 CCTTGTGGGGCCCGGCAACGCAGCGGCACGCCCACC--TGCACGGCCAGGACAGAGAACGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71094 59 +    105888 CCTTGTGGGGCCCGGCAACGCAGCGGCACGCCCACC--TGCACGGCCAGGACAGAGAACGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104392 59 +    417917 CCTTGTGGGGCCCAGCAATGCAGCGGCACGCCCACC--CGCACGGCCAGGACAGGGAACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27023 59 + 141252148 CCTTATGGGGCCAGGGAACGGAGCGGCACGCCCGCC--CGCACAGCCGGGACAGGGAGCGA
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143555 58 +  25972781 CCGGGTGGGGCCAGGCCGAGCCGCGGCATGCCCACC---GCACAGCCAGGACCGGGATCGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106228 58 -   1025902 CCGGGTGGGGCCAGGCCGAGCCGCGGCACGCCCACC---GCACAGCCGGGACCGGGATCGA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9199 58 -    350446 CCGGGTGGGGCCAGGCCGAGCCGCGGCACGCCCACC---GCACAGCCGGGACTGGGATCGA
i manLeu1.NW_012108508v1       C 0 C 0
s cebCap1.NW_016107987v1          186357 61 -    735872 CCTTGTGGGGCCAGGTGACGCAGCGGCACGCCCACCCCCGCACGGCGAGGACAGGGAACGA
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                119597 215 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97203 14 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=348337.000000
s hg38.chrX_KI270880v1_alt         35645 105 +    284869 GGCCGCCAGCCCTGACAGTCCCTTCGGCCCCTCCGCAGTCCGCTACGGCGACGGCCCCCAGGCCTCCTCCCCGTGGCTCCAG-TTCACCTTTTCCAGGACACGGCA
s panTro5.chrX                    135337 105 + 155549662 GGCCGCCAGCCCTGACAGTCCCTTCCGCCCCTCTGCACCCCGCTACGGCAACAGCCCCCAGGCCTCCTCCCCGTGGCTCCGG-TTCACCTTTTCCAGGACACGGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71153 105 +    105888 GGCCGCCAGCCCTGACAGTCCCTTCCGCCCCTCTGCATCCCGCTACGGCAACAGCCCCCAGGCCTCCTCCCCGTGGCTCCGG-TTCACCTTTTCCAGGACACGGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104451 106 +    417917 GGCCGCCAGCCCTGACAGTCCCTTCCGGCCCTCTGCACCCCGCTATGGCGACGGCCCCCAGGCCTCCTCCCCATGGCTCCGGTTTCACCTTTTCCAGGACACGGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27082 105 + 141252148 GGCCGCCAGCCCTGACAGTCCCTTCCGCCCCTCCGCACCCAGCTACGGCGACGGCCCCCAGGCCTCCTCCCTGTGGCTCTGG-TTCACCTTTTCCAGGACACGGCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97217 104 + 149150640 TGCCGCCAGCCCCGACAGTCCCTTCCG-ACCTCCGCACCCCAGCGCGGCGACAGCCCCCAGGCCTCCTGCCCGGGGCTCCGG-TTCACCTTTTCCAGGCCACGGCA
i rheMac8.chrX                 I 14 I 13
s macNem1.NW_012017243v1          143613 105 +  25972781 GGCCGCCAGCCCCGACAGTCCCTTCCGTCCCTCCGCACCCCAGCGCGGCGACAGCCCCCAGGCCTCCTGCCCGGGGCTCCGG-TTCACCTTTTCCAGGCCACGGCA
i macNem1.NW_012017243v1       C 0 I 13
s cerAty1.NW_012001098v1          106286 105 -   1025902 GGCCGCCAGCCCCGACAGTCCCTTCCGTCCCTCCGCACCCCAGCGCGGCGACAGCCCCCAGGCCTCCTGCCCGTGGCTGCGG-TTCACCTTTTCCAGGCCACGGCA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9257 105 -    350446 GGCCACCAGCCCCGACAGTCCCTTCCGTCCCTCCGCACCCCAGCGTGGCGACGGCCCCCAGGCCTCCTCCCCGTGGCTCCGG-TTCACCTTTTCCAGGCCACGGCA
i manLeu1.NW_012108508v1       C 0 C 0
s cebCap1.NW_016107987v1          186418  97 -    735872 GGCCAGCAGCCGTGATGGCCCCTTCCGCCCCTCCGCAC------ACGGAGACAG-CCCTGGGCCTCCTCCCCGTGGCTGTGG-TTCCCCTTTCCCGGGCCACAGA-
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                119597 215 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=16735.000000
s hg38.chrX_KI270880v1_alt         35750 10 +    284869 ACGGGACCCG
s panTro5.chrX                    135442 10 + 155549662 ACGGGACCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71258 10 +    105888 ACGGGACCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104557 10 +    417917 ACGGGACCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27187 10 + 141252148 ATGGGACCCT
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          106391 10 -   1025902 GTAGGACCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9362 10 -    350446 GTAGGACCTG
i manLeu1.NW_012108508v1       C 0 I 7
s cebCap1.NW_016107987v1          186515 10 -    735872 ACGGGAGCCT
i cebCap1.NW_016107987v1       C 0 C 0
e saiBol1.JH378345                119597 215 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97321 13 + 149150640 I
e macNem1.NW_012017243v1          143718 13 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=9445.000000
s hg38.chrX_KI270880v1_alt         35760 8 +    284869 GCCATCTG
s panTro5.chrX                    135452 8 + 155549662 GCCATCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71268 8 +    105888 GCCATCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104567 8 +    417917 GCCATCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27197 8 + 141252148 GCCATCTG
i nomLeu3.chrX                 C 0 C 0
s cebCap1.NW_016107987v1          186525 8 -    735872 GCGCTCTG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1            9372 7 -    350446 I
e saiBol1.JH378345                119597 215 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          106401 0 -   1025902 C
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97321 13 + 149150640 I
e macNem1.NW_012017243v1          143718 13 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=6716.000000
s hg38.chrX_KI270880v1_alt         35768 4 +    284869 CGGA
s panTro5.chrX                    135460 4 + 155549662 CAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71276 4 +    105888 CAGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104575 4 +    417917 CGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27205 4 + 141252148 CAGA
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          106401 2 -   1025902 --GA
i cerAty1.NW_012001098v1       C 0 I 1
s saiBol1.JH378345                119812 4 +    465904 caga
i saiBol1.JH378345             I 215 C 0
s cebCap1.NW_016107987v1          186533 4 -    735872 TGGA
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1            9372 7 -    350446 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97321 13 + 149150640 I
e macNem1.NW_012017243v1          143718 13 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=6570.000000
s hg38.chrX_KI270880v1_alt         35772 2 +    284869 CT
s panTro5.chrX                    135464 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71280 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104579 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27209 2 + 141252148 GT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97334 2 + 149150640 CT
i rheMac8.chrX                 I 13 C 0
s macNem1.NW_012017243v1          143731 2 +  25972781 CT
i macNem1.NW_012017243v1       I 13 C 0
s cerAty1.NW_012001098v1          106404 2 -   1025902 CT
i cerAty1.NW_012001098v1       I 1 C 0
s saiBol1.JH378345                119816 2 +    465904 ct
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          186537 2 -    735872 CT
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1            9372 7 -    350446 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=143229.000000
s hg38.chrX_KI270880v1_alt         35774 35 +    284869 TTTAGACCTGGCTTCCCTCGCTCAGCACACGCGTG
s panTro5.chrX                    135466 35 + 155549662 TTTAGACCTGGCTTCCCTCGCTCAGCCCACGGGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71282 35 +    105888 TTTAGACCTGGCTTCCCTCGCTCAGCCCACGGGTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104581 35 +    417917 TTTAGACCTGGCTTCCCTCGCTCAGCACACGCGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27211 35 + 141252148 TTTAGGCCTGGCTTCCCTCGCTCAGCACACGCACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97336 35 + 149150640 TCTAGGCCTGGCTTCCCTCGCTCAGCGCCCGCGTG
i rheMac8.chrX                 C 0 I 173
s macNem1.NW_012017243v1          143733 35 +  25972781 TCTAGGCCTGGCTTCCCTCGCTCAGCGCCCGCGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106406 35 -   1025902 CTTAGGCCTGGCTTCCCTCGCTCAGCGCACGCGTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1            9379 35 -    350446 TATAGGCCTGGCTTCCCTCGCTCAGCACCCGCGTG
i manLeu1.NW_012108508v1       I 7 C 0
s saiBol1.JH378345                119818 35 +    465904 gTGAGGCCTGGCTTCCCTCGCTCAGCACATGCGTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          186539 34 -    735872 TTGAGGCCTGGCTTCCCTCGCTCAGC-CACGCGTC
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=13939.000000
s hg38.chrX_KI270880v1_alt         35809 8 +    284869 TGGGACTC
s panTro5.chrX                    135501 8 + 155549662 TGGGACTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71317 8 +    105888 TGGGACTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104616 8 +    417917 TGGGATTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27246 8 + 141252148 CGGGACTC
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143768 8 +  25972781 AAGGAGTC
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          106441 8 -   1025902 AAGGAGTC
i cerAty1.NW_012001098v1       C 0 I 8
s manLeu1.NW_012108508v1            9414 5 -    350446 AAGGA---
i manLeu1.NW_012108508v1       C 0 I 5
s saiBol1.JH378345                119853 8 +    465904 TGGGTCTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          186573 8 -    735872 TGGGACTC
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=49125.000000
s hg38.chrX_KI270880v1_alt         35817 29 +    284869 ACACACCTTGCTCTGTGTGGATCGTCTGC
s panTro5.chrX                    135509 29 + 155549662 ACACACCTTGCTCTGTGTGGATCGTCTAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71325 29 +    105888 ACACACCTTGCTCTGTGTGGATCGTCTAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104624 29 +    417917 ACACACCTTGCTCTGTGTGGATCGTCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27254 29 + 141252148 ACACACCTTGCTCTGTGTGGACCGTCTGC
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143778 27 +  25972781 GCACGC--TGCTCTGTGTGGATCGTCGGC
i macNem1.NW_012017243v1       I 2 C 0
s manLeu1.NW_012108508v1            9424  6 -    350446 GCACGC-----------------------
i manLeu1.NW_012108508v1       I 5 C 0
s saiBol1.JH378345                119861 29 +    465904 ACGCACGCCGCTGTGTGGGGACCGTCTGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          186581 29 -    735872 AGGCACGCTGCTGTGTGTGGACCGTCTGC
i cebCap1.NW_016107987v1       C 0 I 2221
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          106449  8 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-3650.000000
s hg38.chrX_KI270880v1_alt         35846 33 +    284869 CCACCTTGCTCTGTGTGGATCGTCTGCCCACCT
s panTro5.chrX                    135538  2 + 155549662 CC-------------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71354  2 +    105888 CC-------------------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104653  2 +    417917 CC-------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27283  2 + 141252148 CC-------------------------------
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143805  2 +  25972781 CC-------------------------------
i macNem1.NW_012017243v1       C 0 C 0
e manLeu1.NW_012108508v1            9430  0 -    350446 C
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                119890  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e cerAty1.NW_012001098v1          106449  8 -   1025902 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=40826.000000
s hg38.chrX_KI270880v1_alt         35879 48 +    284869 TGCTCTGTGTGGATCGTCTGCCTGTGTACTGCTGAACCCTATTCCATT
s panTro5.chrX                    135540 25 + 155549662 -----------------------GTGTACTGCTGAACCCTATTCCACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71356 25 +    105888 -----------------------GTGTACTGCTGAACCCTATTCCACT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104655 25 +    417917 -----------------------GTGTACTGCTGAACCCTATTCCATT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27285 25 + 141252148 -----------------------GTGTACTGCTGATTCCTATTCCACG
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143807 25 +  25972781 -----------------------GTGTCCGGCTGCATCCTATTCCATT
i macNem1.NW_012017243v1       C 0 I 49
s cerAty1.NW_012001098v1          106457 48 -   1025902 TGCTCTGTGTGGATCGTCCGCCCGTGTACGGCTGCACCCCATTCCATT
i cerAty1.NW_012001098v1       I 8 I 5
s manLeu1.NW_012108508v1            9430 48 -    350446 TGCTCTGTGTGCATCGTCGGCCCGTGTACGGCTGCACCCTATTCCATT
i manLeu1.NW_012108508v1       C 0 I 5
s saiBol1.JH378345                119890  6 +    465904 ------------------------------------------TCCAGT
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=78149.000000
s hg38.chrX_KI270880v1_alt         35927 45 +    284869 ATGGCTCTGCTGACCTCAGAGTAGCTCCCTGAGCAGGAAACA-CCG
s panTro5.chrX                    135565 45 + 155549662 ATGGCTCTGCTGACCTCAGAGTAGCTCCCTGAGCAGGAAACA-CCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71381 45 +    105888 ATGGCTCTGCTGACCTCAGAGTAGCTCCCTGAGCAGGAAACA-CCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104680 46 +    417917 ATGGCTCTGCTGACCTCACAGTAGCTCCCTGAGCAGGAAACACCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27310 45 + 141252148 ATGGCTCTGCTGACCTCAAAGTAGCTCCCAAAGCAGGAAACA-CCA
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          106510 44 -   1025902 ACGGCTCTGGTGATTGCACAGCAGCTCCCTAAGCACGAAGCA-CA-
i cerAty1.NW_012001098v1       I 5 C 0
s manLeu1.NW_012108508v1            9483 44 -    350446 ACGGCTCTGGTGATTGCAAAGTAGCTCCCTAAGCAGGAAGCA-CA-
i manLeu1.NW_012108508v1       I 5 C 0
s saiBol1.JH378345                119896 45 +    465904 CCGGCTCTGCTGACCTGACAGGAGCGCCCTACGCAGGAAACG-CCA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         88938 971 -    811265 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macNem1.NW_012017243v1          143832 49 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=141204.000000
s hg38.chrX_KI270880v1_alt         35972 58 +    284869 CCGGCCCCAAGGCCCACGTGATGGTGCTGCT---GA--GGGGGACTCGCGAGGCAGACAAAGT
s panTro5.chrX                    135610 58 + 155549662 CCGGCCCCAAGGCCCGCGTGATGGTGCTGCT---GA--GGGGGACTCGCGAGGCAGACAAAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71426 58 +    105888 CTGGCCCCAAGGCCCGCGTGATGGTGCTGCT---GA--GGGGGACTCGCGAGGCAGACAAAGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104726 60 +    417917 CCGGCCCCAAGGCCCACGTGATGGTGCTGCT---GAGGGGGGGGCTCACGAGGTGGACAAAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27355 58 + 141252148 CCGGCCCCAAGGCCCACGTGATGGTGCTGCT---GC-GGAGGGACTCGCGAGGCGGAC-GAGT
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143881 60 +  25972781 CCGGCCCCGAGG-CCACGTGATGGTGCTGCTGCGGC--AGGGGCACCGCGAGGAGGACCAAGA
i macNem1.NW_012017243v1       I 49 C 0
s cerAty1.NW_012001098v1          106554 57 -   1025902 CCGGCCCCGAGG-CCACGTGATGGTGCTGCT---GC--AGGGGCATCGCGAGGAGGACCAAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         89909 57 -    811265 CCGGCCCCGAGG-CCACGTGATGGTGCTGCA---GC--AGGGGCATCGCAAGGAGGACCAAGA
i chlSab2.chrUn_KE147541v1     I 971 C 0
s manLeu1.NW_012108508v1            9527 54 -    350446 CCGGCCCCGAGG-CCACGTGA---TGCTGCT---GC--AGGGGCATCGCGAGGAGGACCAAGA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119941 56 +    465904 CCGGCCCCCAGGCCCACGCTCCAGTGC--CT---CG--GGGGTGCTCGGGAGCAGGGCAGAGT
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97371 173 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=61251.000000
s hg38.chrX_KI270880v1_alt         36030 14 +    284869 CCCGAGCGTCTACA
s panTro5.chrX                    135668 14 + 155549662 CCCAAGCGTCTACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71484 14 +    105888 CCCGAGCGTCTACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104786 14 +    417917 CCCGAGCGTCTACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27413 14 + 141252148 CCCGAGCATCTACG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97544 14 + 149150640 CCCGGGCGTCTGCA
i rheMac8.chrX                 I 173 C 0
s macNem1.NW_012017243v1          143941 14 +  25972781 CCCGGGCGTCTGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106611 14 -   1025902 CCCAGGCGTCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         89966 14 -    811265 CCCGAGCGTCTACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9581 14 -    350446 CCCGAGCGTCTGCA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                119997 14 +    465904 CCTAAGCGTCTACA
i saiBol1.JH378345             C 0 I 24
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=372225.000000
s hg38.chrX_KI270880v1_alt         36044 119 +    284869 GTCGCACAGGGCACGCCGACACCGACCGACAGGTGTGAGAGGAGAAAGGAGGACGCCACAACCACGGCCGGCAAGTTCAGCACGCGTTCCTCGGCGGGTGACGGGACAAGAGGACGATC
s panTro5.chrX                    135682 119 + 155549662 GTCACACAGGGCACGCCAACACCGACCGACGGGTGTGAGAGGAGAAAGGAGCACGCCACAACCACGGCCGGCAAGTTCAGCACGCGTTCCTCGGCGGGTGACGGGACAAGAGGACGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71498 119 +    105888 GTCGCACAGGGCACGCCAACACCGACCAACGGGTGTGAGAGGAGAAAGGAGCACGCCACAACCACAGCCGGCAAGTTCAGCACGCGTTCCTCGGCGGGTGACGGGACAAGAGGACGAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104800 119 +    417917 GTCGCACAGGGCACGCCGACACCGACCGACGGGTGTGAGAGGAGAGAGGAGGACGCCACAAGCACGACCGGCAAGTTCAGCACGCGTTCCTCGGCGGGTGACGGGACAAGAGGACGATC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27427 118 + 141252148 CTCGCACAGGGCACGCTGACACCGACCAACGGGTGTGGGAGGAGAAAGGAGGACA-CACAAGCACGGCTGGCAAGTTCAGCACGACTTCCTCGGCAGGTGACAGGACATGAGGACGATC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97558 119 + 149150640 CTCGCACGGGGCACGCTGACACCGACTGACGGGTCTGAGGGGAGACAGGAGGACGCCACAGCCACGGCTCGCGAGTTCAGCACGACTTCCTCAGCCGGTGCCAGGACAAGGGGAACATG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          143955 119 +  25972781 CTCGCACGGGGCACGCTGACACCGACCGACGGGTCTGAGGGGAGACAGGAGGACGCCACGGCCACGGCTCGCGAGTTCAGCACGACTTCCTCGGCCGGTGCCAGGACAAGGGGAACATG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106625 118 -   1025902 CTCACACGGGGCACGCTGACACCGACCGACGGGTCTGAGGGGAGACAGGAGGACGCCACAGCCACGGCTCGCAAGTTCAGCACGACTTCCTGGGCCGGTGCCAGGACAAGGGGAA-ATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         89980 111 -    811265 CTCGCACGGGGCACGCTGACACCGACCGACGGGTCTGAGGGGAGAGAGGAGGACGCCACAGCCACGGCTCGCAAGTTCAGCACAAGTT-------CAGTGCCAGGACAAAGGGAA-ATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9595 118 -    350446 CTCGCACGGGGCACGCTGACACCGACCGACGGGTCTGAGGGGAGAGAGGAGGACGCCACAGCCACGGCTCGCAAGTTCACCACGACTTCCTGGGCCGGTGCCAGGATAAGGGGAA-ATG
i manLeu1.NW_012108508v1       C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                120011  24 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=35374.000000
s hg38.chrX_KI270880v1_alt         36163 18 +    284869 TGCAGACACGTAAAGA--TG-
s panTro5.chrX                    135801 18 + 155549662 TGCAGACACGTAAAGA--TG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71617 18 +    105888 TGCAGACACGTAAAGA--TG-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104919 18 +    417917 TGCAGACACGTAAAGA--TG-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27545 18 + 141252148 TACAGAAACGTGAAGA--TA-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97677 18 + 149150640 TGCAGACACGGAAAGATG---
i rheMac8.chrX                 C 0 I 8
s macNem1.NW_012017243v1          144074 16 +  25972781 TGCAGACACGGAAAGA-----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106743 16 -   1025902 TGCAGACACGGAAAGA-----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90091 15 -    811265 TGCAGACACGGAAAG------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9713 15 -    350446 TGCAGACACGGAAAG------
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                120035 17 +    465904 TGCAGAAATGCAACGT----G
i saiBol1.JH378345             I 24 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=26362.000000
s hg38.chrX_KI270880v1_alt         36181 29 +    284869 TGAAAACGCTGCCGAGCTATGTGAGCGAG
s panTro5.chrX                    135819 29 + 155549662 TGAAAACGCGGCCGAGCTACGTGAGCGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71635 29 +    105888 TGAAAACGCGGCCGAGCTACGTGAGCGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104937 29 +    417917 TGAAAACGCTGCCGAGCTACGTGAGCGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27563 29 + 141252148 TGAAAACGCTGCCGGGCTACGTGAGCACA
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          144090 10 +  25972781 -------------------TGCCAGCAAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106759 10 -   1025902 -------------------TGCCAGCAAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90106 11 -    811265 ------------------ATGCCAGCAAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9728 11 -    350446 ------------------ATGCCAGCAAA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                120052 29 +    465904 TCAACATGCCACCCAGCTGGGTGAGCACA
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97695  8 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=391656.000000
s hg38.chrX_KI270880v1_alt         36210 108 +    284869 TGACATCGCGGAGCCAGAGGAGTCTTCAGGGTCACATGAACCAGTGGTGGGCTGtggctcggagcccccacccaagtctcacggggaactgtgatcctgagtgttgga
s panTro5.chrX                    135848 108 + 155549662 TGACGTCGCGGAGCCGGAGGAGTCCTCAGGGTCAATTGAACCAGTGGTGGGCTGtggctcggagcccccacccaagtctcacggggaactgtgatcctgagtgttgga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71664 108 +    105888 TGACGTCGCGGAGCCGGAGGAGTCCTCAGGGTCAATTGAACCAGTGGTGGGCTGtggctcggagcccccacccaagtctcacggggaactgtgatcctgagtgttgga
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          104966 108 +    417917 CGACATCGCGGAGCCGGAGGAGTCTTCAGGGTCACGTGAACCAGCGGTGGGCTGtggctcggagcccccacccaagtctcacggggaactgtgatcctgagtgttgga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27592 106 + 141252148 TGACATCGCGGAGCCGGAGGAGTCTTCAGGGTCA--TGAACCAGTGGTGGCCtctggctcgaagcccccacccaagtctcatggggaactgtgatcctgagtgttgga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97703 108 + 149150640 TGACATCGTGGAGCCGGATGAGTCCTCAGGGTCACATGAAGCCGGGCTGGACtttggctcggagcccccaccccaatctcatggggcaccgcaatcctgagtgttgga
i rheMac8.chrX                 I 8 I 111
s macNem1.NW_012017243v1          144100 108 +  25972781 TGACATCGTGGAGCCGGATGAGTCCTCAGGGTCACATGAAGCCGGGCTGGACtttggctcggagcccccaccccaatctcatggggcaccgcgatcctgagtgttgga
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          106769 108 -   1025902 TGACATCGTGGAGCCGGATGAGTCCTCAGGGTCACATGAAGCCGGGCTGGACtttggctcggagcccccaccccaatctcatggggaaccgtgatcctgagtgttgca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90117 103 -    811265 TGATATCGTGGAGCCGGATGAGTCCTCAGGGTCACATGAAGCCGGGCTGGA-----GCCCGGAAttcccaccccaatctcatggggaactgcgatcctgagtgttgca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9739 108 -    350446 TGACATCGTGGAGCCGGATGAGGCCTCAGGGTCACATGAAGCCGGGCTGGACtttggctcggagcccccaccccaatctcatggggcactgcgatcctgggtgttgca
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                120081 101 +    465904 TGGCATCACAGAGCCGCAGGGGCCTTCAGG-----TGGGGCCGGCGCTGGGTCCCGGCTCTGC-CCCCCGCCCGAATCTCCGGCTGAACTGGGAT-CTGAGTGCTGGC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=120172.000000
s hg38.chrX_KI270880v1_alt         36318 41 +    284869 gcagggctctgctggggggtgactgggtgatgagggtggac
s panTro5.chrX                    135956 41 + 155549662 gcagggctctgctggggggtgactgggtgatgagggtggac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71772 41 +    105888 gcagggctccgctggggggtgactgggtgatgagggtggac
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105074 41 +    417917 gcagggctctgctggggggtgactgggtgacgagggtggac
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27698 41 + 141252148 gcagggctctgctggggggtgactgggtgatgagggtggac
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          144208 40 +  25972781 -gcggggtctgctgggggctgacggggtcatgggggtggac
i macNem1.NW_012017243v1       C 0 I 2335
s cerAty1.NW_012001098v1          106877 40 -   1025902 -gtggggtctgctgggggctgactgggtcatgggggtggac
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90220 40 -    811265 -ttggggtctgctggcggctgactgggtcatgggggtggac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9847 40 -    350446 -gtggggtctgctgggggctgactgggtcatgggggtggac
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                120182 38 +    465904 -GGAGGGGCTGCTGggaggggacaggatcct--gggtgggc
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97811 111 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=180655.000000
s hg38.chrX_KI270880v1_alt         36359 67 +    284869 agcccccttgccggtctcgtaatcctgagttcttgtgagatccgatggtctaaaagtgggtggcaGT
s panTro5.chrX                    135997 67 + 155549662 agcccccttgctgctctcgtaatcctgagttcttgtgagatccgatggtctaaaagtgggtggcaGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71813 67 +    105888 agcccccttgctgctctcgtaatcctgagttcttgtgagatccgatggtctaaaagtgggtggcaGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105115 67 +    417917 agccccctcgctgctctcgtaatcctgagttcttgtgagatccgatggtctaaacgtgggtggcaGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27739 67 + 141252148 ggcccccttgctgctctcataatactgagttcttgtgagatccgatggtttaaaagtgggtggcaGT
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          106917 67 -   1025902 ggccccctggctgctctcgtgatactgagttcttgtgagacccgatggtttaaaagtgggtggcaGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90260 67 -    811265 ggccccctggctgctctcgtgatactgagttcttgtgagatccgatggtttaaaagtgggtggcaGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9887 67 -    350446 gaccccctggctgctctcgtgatactgagttcttgtgagacccgatggtttaaacgtgggtggcaGT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                120220 61 +    465904 ctccccctcgctcctcctg------tgagttctcgtgagacccaacggtttcaaagcgcgtggtggt
i saiBol1.JH378345             C 0 I 938
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=293021.000000
s hg38.chrX_KI270880v1_alt         36426 105 +    284869 ggccgggtgcggtggctcaggcctgtcatcccagcactttgagacgccaaggcgggtggatcacccgaggtcaagagttcgagaccagcatgg-ccaacatggtga
s panTro5.chrX                    136064 105 + 155549662 ggccgggcgcggtggctcacgcctgtcatcccagcactttgagacaccaaggcgggtggatcacctgaggtcaagagttcgagaccagcatgg-ccaacatggtga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71880 105 +    105888 ggccgggcacggtggctcacgcctgtcatcccagcactttgagacgccaaggcgggtggatcacctgaggtcaagagttcgagaccagcatgg-ccaacatggtga
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105182 105 +    417917 ggccgggcgcggtggctcacgcctgtcatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcatgg-ccaacatggaga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27806 105 + 141252148 ggccgggcgcggtggctcacgcctgtcatcccagcactttgagacgccgaggcgggcagatcacctgaggtcaagagtttgagaccagcatgg-ccaacatggtga
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          106984 105 -   1025902 ggccgggcgcggtggctcacgcctgtcatcccaggactttgggaggccgaggtgggtggatcccttgaggtcaggagttcaagaccagcctga-ccaacagggtca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90327 105 -    811265 ggccgggcacggtggctcacgtctgtcatctcagcactctgggaggccgaggtgggtggatcccttgaggtcaggagttcgagaccagcctgg-ccaacatggtca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1            9954 105 -    350446 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggagaccgaggcgggtggatcacctgaggtcaggagttcaagaccagcccgg-ccaacatggtca
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                121219 106 +    465904 ggccgggcgcggtggcatagtcctgcggtcccggcactgggggaggccgaggcaagtggctcacctgaggtcaggagttcgagaccagcctggcccaacatggcaa
i saiBol1.JH378345             I 938 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          169742 5258 +   1230721 M
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=542394.000000
s hg38.chrX_KI270880v1_alt         36531 181 +    284869 aaccccgtctctcctaaaaatacacaaattagccgggtgtgg--tggcgcatgcctgtaatcccagctacccaggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgaggtgagatggtgccattgcactccag-----------------------------------------------cttgggtgacagagcaagactctgtctcc-------aaa
s panTro5.chrX                    136169 186 + 155549662 aaccccgtctctcctaaaaatacacaaattagccgggcgtag--tggcgcatgcctgtcatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaggtgagatggtgccattgcactccag-----------------------------------------------cctgggtgacagagcaagactctgtctcc--aaaaaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     71985 188 +    105888 aaccccgtctctcctaaaaatacacaaattagccgggtgtgg--tggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaggtgagatggtgccattgcactccag-----------------------------------------------cttgggtgacagagcaagactctgtctccaaaaaaaaaa
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105287 182 +    417917 aaccccgtctctcctaataatacacaaattagccgggtgtgg--tggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaggtgagatggtgccattgcactccag-----------------------------------------------cttgggtgacagagcaagactctgtctcc------aaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     27911 188 + 141252148 aaccccgtctttcctaaaaatacacaaattagctgggcgtgg--tggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaattcagatggcgccagtgcattccag-----------------------------------------------cctgggcaacatagcaagaccctgtctcaaaaaaagaaa
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107089 181 -   1025902 aaccccatctctactaaaaatataataactagccgggcgtgg--tggcgggcgcccgttatcccagctactcgggaggctgaggcaggagaatggcgggaacccgggacgcggaggttgcagtgagctgagatggtgccactgcactccag-----------------------------------------------cctgggcgacagagcgaaactctgtgtca-------aaa
i cerAty1.NW_012001098v1       C 0 I 2
s chlSab2.chrUn_KE147541v1         90432 180 -    811265 aaccccatctctactaaaaatacaaaaattagccgggcgtgg--tggcgggcgcccgttatcccagcgactcgggaggctgaggcagaagaatcgcttg-acccgggaggtggcaggtgcagtgagcagagatggtggcgctgcacaccag-----------------------------------------------cctgggcgacagagcgagactctgtgtca-------aaa
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1           10059 219 -    350446 aaccccatctctactaaaaatacaaaaattagccgggcgtgg--tggcgggcacccgttatcccagctactcgggaggctgaggcaggagaatggcttgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG---------GCGAGACTCTGTGTCA-------Aaa
i manLeu1.NW_012108508v1       C 0 I 17
s colAng1.NW_012115411v1          175057 183 +   1230721 aaccccgtctctactaaaaatacaaaaattagccgggtgtgggactgcacacgcccgttatcccagctactcgggcggctgaggcaggaaaatcgcttgaacccgggaggtggcggttgcagtgagctgagatggtgccactgctctccag-----------------------------------------------cctgggggacagagcgagagtctgtgtca-------aaa
i colAng1.NW_012115411v1       M 5258 C 0
s saiBol1.JH378345                121325 180 +    465904 gaccccgcctgtactaaaaatacaaaaattagccgggcatgc--tggtgagcaccgacagtcccagctacccgggaggctgaggcaggaggatcgctggaacccggggggcggaggccgcagtgagccgagaccgcgccactgcactccac-----------------------------------------------gctgggcgacagagcgagacttggtctca-------aa-
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=6552.000000
s hg38.chrX_KI270880v1_alt         36712 2 +    284869 aa
s panTro5.chrX                    136355 2 + 155549662 aa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72173 2 +    105888 aa
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105469 2 +    417917 aa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28099 2 + 141252148 aa
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107272 2 -   1025902 aa
i cerAty1.NW_012001098v1       I 2 C 0
s chlSab2.chrUn_KE147541v1         90614 2 -    811265 aa
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1          175240 2 +   1230721 aa
i colAng1.NW_012115411v1       C 0 I 19
s saiBol1.JH378345                121505 2 +    465904 aa
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10278 17 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=12423.000000
s hg38.chrX_KI270880v1_alt         36714 9 +    284869 aaaaagaga
s panTro5.chrX                    136357 9 + 155549662 aaaaagaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72175 9 +    105888 aaaaagaga
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105471 9 +    417917 aaaaagaga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28101 9 + 141252148 gaaaaagaa
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107274 9 -   1025902 acaaacaca
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1         90616 9 -    811265 acaaacaaa
i chlSab2.chrUn_KE147541v1     C 0 I 1
s saiBol1.JH378345                121507 9 +    465904 aaaaaaaaa
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10278 17 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          175242 19 +   1230721 I
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-3942.000000
s hg38.chrX_KI270880v1_alt         36723 9 +    284869 -aaagaTGAT
s panTro5.chrX                    136366 9 + 155549662 -aaagaTGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72184 9 +    105888 -aaagaTGAT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105480 9 +    417917 -aaagaTGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28110 9 + 141252148 -aaaaaagaT
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107284 5 -   1025902 --aagaa---
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1         90626 5 -    811265 --aagaa---
i chlSab2.chrUn_KE147541v1     I 1 C 0
s colAng1.NW_012115411v1          175261 5 +   1230721 --aagaa---
i colAng1.NW_012115411v1       I 19 C 0
s saiBol1.JH378345                121516 7 +    465904 aaaaaCT---
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10278 17 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     97811 111 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=7416.000000
s hg38.chrX_KI270880v1_alt         36732 2 +    284869 AC
s panTro5.chrX                    136375 2 + 155549662 AC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72193 2 +    105888 AC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105489 2 +    417917 AC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28119 2 + 141252148 AC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97922 2 + 149150640 ac
i rheMac8.chrX                 I 111 C 0
s cerAty1.NW_012001098v1          107289 2 -   1025902 aC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90631 2 -    811265 aC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175266 2 +   1230721 AC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                121523 2 +    465904 AT
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10278 17 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1200696.000000
s hg38.chrX_KI270880v1_alt         36734 337 +    284869 AGACAGcctgtgtttattgaaacaattcatgctg--tcattaaaaaccttcccacagagaaaa--ctatcccaaatggcttcactgatgagttctgcc--aaacattcaaataaaaataacacccattctaaacaaatggctccagaaa-agtgaattctaaaggacatttt--ccaagcaactctccgaggccagcat-cccc--ccgatgctaaaccagacc-aagctatcacaagaaaaggagaccgcaggccagtccttcacgagcgcagacgcaaCCCC-TGCGAGGC--CTGGCAATGTGGACCCAACACATAGGAGAAGTGTGACACTGTGTGGTGGACCAGGGAC
s panTro5.chrX                    136377 338 + 155549662 AGACAGcctgtgtttattgagacaattcatgctg--tcgttaaaaaccttcccacagagaaaactctgtcccaaatggcttcactgatgaattctacc--aaactttcaaataaaaataacacccattctaaacaaatggctccagaaa-agtgaattctaaaggacatttt--ccaagcaactctccaaggccagcat-cccc--ccgatgctaaaccagacc-aagctatcacaagaaaaggagaccgcaagccagtccttc-cgagcgcagatgcaaCCCC-TGCGAGGC--CTGGCAATGTGGACCCAACACATAGGAGAAGTGTGACAACATGTGGTGGACCAGGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72195 330 +    105888 AGACAGcctgtgtttattgaaacaattcatgctg--tcgttaaaaaccttcccacagagaaaa--ctgtcccaaatggcttcactgatgagttctacc--aaacattcaaataaaaataacacccattctaaacaaatggctccagaaa-agtgaattctaaaggacatttt--ccaagcagctctccgaggccagcat-cccc--ccgatgctaaaccagacc-aagctatcacaagaaaaggagaccgcaggccagtccttc-cgagcgcagatgcaaCCCCTTGCAAGGC--CTGGCAATGTGGACCCAACACATAGGAGAAGTGTGACACCGTGTGGT-------GGAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105491 338 +    417917 AGACAGcctgtgtttattgaaacaattcatgctg--tcgttacaaaccttcccacagagaaaactctgtcccaaatggcttcactgatgagttctacc--aaacattcaaataaaaataacacccattctaaacaaatggctccagaaa-agtgaattctaaaggacatttt--ccaggcagctctccgaggccagcat-cccc--ccgatgctaaaccagacc-aagctatcacaagaaaaggagaccgcaggccagtgcttc-cgagcgcagatgcaaCCCC-TGGGAGGC--CTGGCAATGTGGACCCAACACATAGGAGAAGTGTGACACCGTGTGGTggaccagggac
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28121 342 + 141252148 AGACAGcctgtgtctattgaaacaattcacgctg--tcgttaaaaaccttcccacagagaaaactctgtcccaaatggcttcactgataagttctacc--aaacattcaaataaaaataacaccctttctaaacaaatggctccagaaa-agtgaattctaagggacatttt--ccaggccactccccgatgccagcat-cccccgccgatgctaaactagaccaaagctatcacaagaaaaggagaccgcaggcctgtccttcacgagcgcagacacaaCCAC-TGCAAGGC--CTGGCAATGTGGGCCCAACACATAGGAGAAGTGTGACACCGTGTGGTGGACCAGGGAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     97924 328 + 149150640 agacagcctgtgtctatggaaacaattcacgctg--tcattaaaaaccttcccacagagaaaactccgtcccaaatggcctcactgatgagttccagc--aaacactcacat-aaaataacacccagtgtaaacaaacggctccagaaaaagtgaattctaagggacatttc--ccaagcagctccccgaggccagcat-cccc-------------ccagacc-aagccatgacaagaaaaggagaccacaggccaggccttcacgagcgcagacacaaCCCC-TGCAAGGC--CAGGCCATCTGCACCCAACACAGAGGAGAAGTGTGACACCGTGTGCTGGACCAGAGAC
i rheMac8.chrX                 C 0 I 257
s cerAty1.NW_012001098v1          107291 317 -   1025902 AGACAGcctgtgtgtatggaaacaattcatgctg--tggttaaaaaccttcccacagagaaaactgtgtcccaaatggcttcactgatgagttccata---------------gaaataacacccagtgtaaacaaacggctccagaaaaagtgaattctaagggacattt---ccaagcagctccccgaggccagcat-cccc-------------ccagacc-aagccatgacaagaaaaggagaccacaggccaggccttcacgagcgcagacacaaCCCC-TGCAAGGCCACAGGCCACCTGCACCCAACACAGAGGAGAAGTGTGACACCGTGTGCTGGAGCAGGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90633 329 -    811265 AGACAGATtgtgtctattgaaacaattcacgctg--tggttaaaaaccttcccacagagaaaactctgtcccaaacggcttcgctgatgagttccagc--aaacactcacataaaaataacacccagtggaaacaaacggctccagaaacagtgaattctaagggacatttc--ccaagcaactccccgaggccagcat-cccc-------------ccagacc-aagccatgacaagaaaacgagaccacaggccagtccttctcgagcgcagacacaaCCCC-TGCAAGGC--CAGGCCATCTGCACCCAACACAAAGGAGAAGTGTGACACTGTGTGGTGGACCAGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10295 329 -    350446 aaacaGcctgtgtctatggaaacaattcacgctg--tggttaaaaaccttcccacagagaaaactctgtcccaaatggcttcactgacgagttccagc--aaacagtcacatagaagtaacacccagtgtaaacaaacggctccagaaaaagtgaattctaagggacacttc--ccaagcagctccccgaggccagcat-cccc-------------ccagacc-aagccatgacaagaaaaggagaccacaggccaggccttcacgagcgcagacacaaCCCC-TGCAAGGC--CAGGCCACCTGCACCCAACACAGAGGAGAAGTGTCACACCGTGTGCTGGGGCAGGGAC
i manLeu1.NW_012108508v1       I 17 C 0
s colAng1.NW_012115411v1          175268 281 +   1230721 AGACAtcctgtgtccactgaaacagttcacgctg--tcgttaaaaaccttcccacagagaaaactctgtcccaaatggcttcactgatgagttccagcaaaaacattcacataaaaataacacccgttgtaaacaaacggctccagaaaaagtgaattctaagggacgtttc--ccaagcaactccccgaggccagcatccccc-------------ccagacc-aagccatcacaagaaaaggagaccacaggccggtcctgcacgagcgcagatgcaaCCCC-TGCAAGGC-----------------------------------------------------CAGGGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                121525 339 +    465904 GGACGGcctgtctctattcaaaccattccaactgcactgaaaaaaaccttcccacagagaaaactctgtccccaacggcttcactggtgaattctgcg--aaacacgctcataaaaataacacccactgtaaacagaaggcttcacga--actccacacggagggacgtttttccccagagactccccgaggccaggat-cccc--ccgacgctgaaccagacc-aacgcatcgccag---aGGCGGCCGCAGGCCGCTCCTCCAGGAGCAGAGACGCGACCCC-TGCGAGGC--CTGGCGACGTGGGCCCCACACCCGGGAGCAGCGCGACGCGGCGCGGCGAGGCAGGGAC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=6312.000000
s hg38.chrX_KI270880v1_alt         37071 5 +    284869 CGGGG
s panTro5.chrX                    136715 5 + 155549662 TGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72525 5 +    105888 TGGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105829 5 +    417917 cgggg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28463 5 + 141252148 CAGGG
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107608 4 -   1025902 -CGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90962 4 -    811265 -CGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10624 4 -    350446 -CGGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          175549 4 +   1230721 -CGGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                121864 5 +    465904 CGGGG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     98252 257 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-1540.000000
s hg38.chrX_KI270880v1_alt         37076 4 +    284869 GCT-G
s panTro5.chrX                    136720 4 + 155549662 GCT-G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72530 4 +    105888 GCT-G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105834 4 +    417917 gcc-g
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28468 4 + 141252148 GCT-G
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107612 4 -   1025902 GCTG-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         90966 3 -    811265 GCT--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10628 3 -    350446 GCT--
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          175553 3 +   1230721 GCT--
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e rheMac8.chrX                     98252 257 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=134801.000000
s hg38.chrX_KI270880v1_alt         37080 66 +    284869 GGGGCTCACCCAAAGACCGGGGG--CTCACCCAAAGACC-GGGGCTCACCCAAAGACT-GGGGCTCACCC
s panTro5.chrX                    136724 67 + 155549662 GGGGCTCACCCAAAGACC-GGGG--CTCACCCAGGGACCAGGGGCTCGCCCAAAGACCGGGGGGTCACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72534 67 +    105888 GGGGCTCACCCAAAGACT-GGGG--CTCACCCAGGGACCAGGTGCTCACCCAAAGACCGGGGGCTCGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105838 50 +    417917 ggggctcacccagggaccagggg--ctcacccagggaccagggGC------------------GTCACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28472 49 + 141252148 GGGGCTCACCCAGGGACCGGGGG--CTCACCCAAAGACTGGGGGC-------------------TCACCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98509 65 + 149150640 GGGGCTCACCCCAAGACC-GGGA--CTCACCCCAAGACC-GGGGCTCACCCAAAGACC-GGGGCTCACCC
i rheMac8.chrX                 I 257 C 0
s cerAty1.NW_012001098v1          107616 60 -   1025902 -----TCACCCCAAGACC-AGGG--CTCACCCCAAGACC-GGGGCTCACTCCAAGACC-GGGGCTCACCC
i cerAty1.NW_012001098v1       C 0 I 26
s chlSab2.chrUn_KE147541v1         90969 58 -    811265 ----CTCACCCAAACACC-AGGA--CTCACCCCAAGACC-GGGGCTCACCCCGAGACC-GGGGCTCA---
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1           10631 61 -    350446 ----CTCACCCCAAGACC-GGGG--CTCACCCCAAGACT-GGGGCTCACTCCAAGACC-GGGGCTCACCC
i manLeu1.NW_012108508v1       C 0 I 19
s colAng1.NW_012115411v1          175556 63 +   1230721 ----CTCACCCTGGGACC-GGCGCTCTCACCCCAAGACC-GGGGCTCACCCAAATACC-GGGACTCACCC
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=44327.000000
s hg38.chrX_KI270880v1_alt         37146 64 +    284869 -AAGGAGCAGGGGCTCGCCC-AAAGACCGGGG-CTCGCCCAGGGACCGGGGGCTCACCCAGGGAGCA
s panTro5.chrX                    136791 64 + 155549662 -AAAGACCGGGGGCTCGCCCAAAAGACGGGGG-CTCACCCAAAGACC-GGGGCTCACCCAGGGACCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72601 65 +    105888 -AAACACCAGGGGCTCACCC-AAAGACTGGGGACTCGCCCAAAGACCGGGGGCTCGCCCGAAGACTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105888 64 +    417917 -AAAGACCGGGGCCTCGCCC-AAACACCAGGG-CTCACCCAAAGACCGGGGGCTCACCCAAACACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28521 65 + 141252148 -AGGGACCGGGGGCTCACCC-AAAGACCGGGGGCTCACCCAGGAACCGGGGGCTCACCCAGGGACCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98574 62 + 149150640 CAAAGACC-GGGGCTCACCC-CAAGACCGGGG-CTCACCCCAAGACC-GGGGCTCACCCTAAGACC-
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         91029 44 -    811265 CAAACACC-GGGGCTCACCC-CGAGACTGGGG-CTCACCCCAAGACC--------------------
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1          175619  7 +   1230721 ----------------------------------------CAAGACC--------------------
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          107676 26 -   1025902 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=84991.000000
s hg38.chrX_KI270880v1_alt         37210 37 +    284869 GGGGCTCACCCAAAGACC-AGGGCTCACCCAAAGACCG
s panTro5.chrX                    136855 38 + 155549662 GGGGCTCGCCCAAAGACCGGGGGCTCACCCAAACACCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72666 36 +    105888 GGGGTTCACCCAGGGACC-GGGGCTCACCCAAACACC-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105952 38 +    417917 GGGGCTCACCCAAACACCGGGGCCTCGCCCAAACACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28586 38 + 141252148 GGGGCTCACCCAGGGACCGGGGGCTCACCCAAAGACCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98636 37 + 149150640 GGGACTCACCCCAAGACC-GGGGCTCACCCCAAGACCG
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107702 37 -   1025902 GGGGCTCACCCCAAGTCC-GGGGCTCACCCTAAGACCG
i cerAty1.NW_012001098v1       I 26 C 0
s chlSab2.chrUn_KE147541v1         91073 37 -    811265 GGGACTCACCCAAACACT-GGGACTCACCCAAACACTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175626 37 +   1230721 GGGGCTCACCCAAACACC-GGGACTCACCCCAAGACTG
i colAng1.NW_012115411v1       C 0 I 9
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1090.000000
s hg38.chrX_KI270880v1_alt         37247 3 +    284869 GGG-
s panTro5.chrX                    136893 3 + 155549662 GGG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72702 3 +    105888 GGG-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105990 3 +    417917 GGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28624 3 + 141252148 GGG-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98673 3 + 149150640 -GGG
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107739 3 -   1025902 -GGG
i cerAty1.NW_012001098v1       C 0 I 52
s chlSab2.chrUn_KE147541v1         91110 2 -    811265 -GG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          175663 9 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=33186.000000
s hg38.chrX_KI270880v1_alt         37250 24 +    284869 GCTCACCCAAAGACC-GGGGCTCGC
s panTro5.chrX                    136896 25 + 155549662 GCTCACCCAAAGACCGGGGGCTCAC
i panTro5.chrX                 C 0 I 29825
s panPan2.chrUn_NW_014024225v1     72705 25 +    105888 GCTCACCCAGGGACCAGGGGCTCGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          105993 25 +    417917 GCTCGCCCAAAGACCGGGGGCTCGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28627 25 + 141252148 GCTCACCCAGGAACCGGGGGCTCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98676 23 + 149150640 -CTCACCCAAATACC-GGGACTCAC
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         91112 24 -    811265 ACTCACCCCGAGACC-GGGACTCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          107742 52 -   1025902 I
e colAng1.NW_012115411v1          175663  9 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=28767.000000
s hg38.chrX_KI270880v1_alt         37274 29 +    284869 CCAGGGACCGGGGGCTCACCCAGGGAGCA
s panTro5.chrX                    166746 29 + 155549662 CCGAAGACCAGGGGTTCACCCAGGGACCG
i panTro5.chrX                 I 29825 C 0
s panPan2.chrUn_NW_014024225v1     72730 29 +    105888 CCAAAGACCGGGGGCTCACCCAGGGACCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106018 29 +    417917 CCAAAGACCGGGGCCTCGCCCAAACACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28652 28 + 141252148 CCAGGGACCGGGGGCTCACCCAAAGACT-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98699 27 + 149150640 CCCAAGACCGGGG-CTCACCCAAATACC-
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         91136 27 -    811265 CCCGAGACTGGGG-CTCACCCAAACACT-
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          107742 52 -   1025902 I
e colAng1.NW_012115411v1          175663  9 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=55068.000000
s hg38.chrX_KI270880v1_alt         37303 22 +    284869 GGGGCTCACCCAAAGACCAGGG
s panTro5.chrX                    166775 22 + 155549662 GGGGCTCGCCCAAACACCGGGG
i panTro5.chrX                 C 0 T 29876
s panPan2.chrUn_NW_014024225v1     72759 22 +    105888 GGGCCTCACCCAAACACAGGCG
i panPan2.chrUn_NW_014024225v1 C 0 I 1
s gorGor5.CYUI01015925v1          106047 22 +    417917 GGGGCTCGCCCAAAGACCGGGG
i gorGor5.CYUI01015925v1       C 0 I 1
s nomLeu3.chrX                     28680 22 + 141252148 GGGGCTCACCCAGGGACTGGGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98726 22 + 149150640 GGGACTCACCCCAAGACCGGGG
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107794 22 -   1025902 GGGACTCACTCCAAGACCGGGG
i cerAty1.NW_012001098v1       I 52 C 0
s chlSab2.chrUn_KE147541v1         91163 22 -    811265 GGGGCTCACCCCAAGACCGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175672 22 +   1230721 GGGACTCACCCCAAGACCGGGG
i colAng1.NW_012115411v1       I 9 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=40331.000000
s hg38.chrX_KI270880v1_alt         37325 23 +    284869 CTCACCCAAAGACCA--GGGCTCAT
s panPan2.chrUn_NW_014024225v1     72782 24 +    105888 CTCACCCAAAGACCA-GGGGCTCAC
i panPan2.chrUn_NW_014024225v1 I 1 C 0
s gorGor5.CYUI01015925v1          106070 24 +    417917 CTCACCCAAAGACCG-GGGCCTCGC
i gorGor5.CYUI01015925v1       I 1 C 0
s nomLeu3.chrX                     28702 25 + 141252148 CTCACCCAGGGACCGGGGGGCTCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98748 23 + 149150640 CTCACCCCAAGACCG--GGACTCAC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107816 23 -   1025902 CTCACCCCAAGTCCG--GGGCTCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91185 23 -    811265 CTCACCCCAAGACTG--GGGCTCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175694 23 +   1230721 CTCACCCAAATACCG--GGACTCAC
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    166797 29876 + 155549662 T
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=44293.000000
s hg38.chrX_KI270880v1_alt         37348 21 +    284869 CCAAAGACCG-GGGCTCACCCA
s panTro5.chrX                    136921 21 + 155549662 CCAAAGACCG-GGGCTCACCCA
i panTro5.chrX                 T 29876 C 0
s panPan2.chrUn_NW_014024225v1     72806 22 +    105888 CCAGGGACCGTGGGCTCACCCA
i panPan2.chrUn_NW_014024225v1 C 0 T 207
s gorGor5.CYUI01015925v1          106094 22 +    417917 CCAAACACCGGGGGCTCACCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28727 22 + 141252148 CCAAAGACTGGGGGCTCACCCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98771 21 + 149150640 CCCAAGACGG-GGGCTCACCCA
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107839 18 -   1025902 CCTAAGACCG-GGGTTCAC---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91208 21 -    811265 CCAAACACTG-GGGCTCACCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175717 21 +   1230721 CCCAAGACCG-GGGCTCACCCA
i colAng1.NW_012115411v1       C 0 I 6
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=24465.000000
s hg38.chrX_KI270880v1_alt         37369 26 +    284869 GGGAGCAGGGGCTTGCCCAGGGACCA
s panTro5.chrX                    136942 26 + 155549662 GGGACCAGGGGCTCGCCCAAAGACCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72621 26 +    105888 AAGACTGGGGACTCGCCCAAAGACCG
i panPan2.chrUn_NW_014024225v1 T 207 C 0
s gorGor5.CYUI01015925v1          106116 26 +    417917 AAGACCGGGGGCTCGCCCAAAGACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28749 26 + 141252148 GGAACCGGGGGCTCACCCAGGGACCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98792 24 + 149150640 AATACC-GGGGCTCACCCCAAGACC-
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107857 10 -   1025902 ---------------CCCAAATACC-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91229 24 -    811265 GAGACC-GGGGCTCACCCAAACACC-
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e colAng1.NW_012115411v1          175738  6 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=93201.000000
s hg38.chrX_KI270880v1_alt         37395 36 +    284869 GGGGCTCACCCAAAGACCGGGG-CTCGCCCAAAGACC
s panTro5.chrX                    136968 37 + 155549662 GGGGCTCACCCAAACACCGGGGGCTCACCCAAAGACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72647 37 +    105888 GGGGCTCGCCCGAAGACTGGGGGTTCACCCAGGGACC
i panPan2.chrUn_NW_014024225v1 C 0 I 2678
s gorGor5.CYUI01015925v1          106142 37 +    417917 GGGGCTCGCCCAAAGACCGGGGGCTCGCCCAAAGACC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28775 36 + 141252148 GGGGCTCACCCAAAGACTGGGG-CTCACCCAGGGACC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98816 36 + 149150640 GGGACTCACCCCAAGACCGGGG-CTCACCCAAAGACC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107867 36 -   1025902 GAGACTCACCCCAATACCGGGG-CTCACCCCAAGACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91253 36 -    811265 GGGGCTCACCCCAAGACCGGGG-CTCACCCCAAGACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175744 36 +   1230721 GGGGCTCACCCCAAGACCGGGA-CTCACCCCAAGACC
i colAng1.NW_012115411v1       I 6 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=48532.000000
s hg38.chrX_KI270880v1_alt         37431 28 +    284869 GGGG-CTCGCCC-AAAGACCGGGGCTCACC
s panTro5.chrX                    137005 29 + 155549662 GGGGGCTCACCC-AAAGACCGGGGCTCACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75362 28 +    105888 GGGG-CTCACCC-AAAGACCGGGGCTCACC
i panPan2.chrUn_NW_014024225v1 I 2678 C 0
s gorGor5.CYUI01015925v1          106179 21 +    417917 GGGGCCTCGCCC-AAAGACCGG--------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28811 29 + 141252148 GGGGGCTCACCC-AAAGACTGGGGCTCACC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98852 29 + 149150640 -GGGGCTCACCCCAAAGACCGGGGCTCACC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107903 11 -   1025902 -GGGGCTCACCC------------------
i cerAty1.NW_012001098v1       C 0 I 26
s chlSab2.chrUn_KE147541v1         91289 28 -    811265 -GGGGCTCACCC-AAACACCGGGGCTCACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          175780 28 +   1230721 -GTGTCTCACCC-AAACACCGGGGCTCACC
i colAng1.NW_012115411v1       C 0 I 31
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-5163.000000
s hg38.chrX_KI270880v1_alt         37459 3 +    284869 ----CAG
s panTro5.chrX                    137034 3 + 155549662 ----CAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75390 3 +    105888 ----CAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     28840 3 + 141252148 ----CAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98881 3 + 149150640 CCA----
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         91317 3 -    811265 C-AG---
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          107914 26 -   1025902 I
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106200 0 +    417917 C

a score=17486.000000
s hg38.chrX_KI270880v1_alt         37462 20 +    284869 GGACCAGGGGCTCGCCCAAA
s panTro5.chrX                    137037 20 + 155549662 GGACCAGGGGCTCGCCCAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75393 20 +    105888 GGACCAGGGGCTCAACCAAA
i panPan2.chrUn_NW_014024225v1 C 0 T 2678
s gorGor5.CYUI01015925v1          106200 14 +    417917 ------GGGCCTCGCCCAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28843 20 + 141252148 GAACCGGGGGCTCACCCAAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98884 19 + 149150640 AGACC-GGGGCTCACCCCAA
i rheMac8.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          107914 26 -   1025902 I
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=51141.000000
s hg38.chrX_KI270880v1_alt         37482 57 +    284869 CACAGGGGGCTCACCCAAAGACTGGGGGCTCACCCAAACACCGGGGGCTCACCCAAA
s panTro5.chrX                    137057 57 + 155549662 GACCGGGGGCTCGCCCAAAGACCGGGGGCTCACCCAAACACCAGGGGCTTACCCAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     72735 57 +    105888 GACCGGGGGCTCACCCAGGGACCAGGGCCTCACCCAAACACAGGCGGCTCACCCAAA
i panPan2.chrUn_NW_014024225v1 T 2678 I 2621
s gorGor5.CYUI01015925v1          106214 56 +    417917 GACCGGGGGCTCGCCCAAAGACCGGGG-CTCGCCCAAAGACCGGGGGCTCGCCCAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28863 55 + 141252148 GACTGGGGG-TCACCCAGGGACCGGGG-CTCACCCAAAGACCGGGGGCTCACCCAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98903 54 + 149150640 GACC-GGGGCTCACCCTAAGACCGGGA-CTCACCCCAAGACCGG-GGCTCACCCCAA
i rheMac8.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          107914 26 -   1025902 I
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=5885.000000
s hg38.chrX_KI270880v1_alt         37539 19 +    284869 CACCGGGGGCTCAC-------------------------------------CCAGG
s panTro5.chrX                    137114 56 + 155549662 GACCGGGGGCTCACCCAAAGACCGGGGCTCACCCAGGGACCAGGGGCTCAACCAAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          106270 19 +    417917 GACCGGGGCCTCGC-------------------------------------CCAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28918 19 + 141252148 AACTGGGGGCTCAC-------------------------------------CCAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     98957 18 + 149150640 GACCGGGG-CTCAC-------------------------------------CCAAA
i rheMac8.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          107914 26 -   1025902 I
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     72792 2621 +    105888 I

a score=46965.000000
s hg38.chrX_KI270880v1_alt         37558 43 +    284869 GACCGGGGGCTCACCCAGGGACCGGGGGCTCACCCAGGGACCG
s panTro5.chrX                    137170 43 + 155549662 GACCGGGGGCTCACCCAAAGACCAGGGGCTCGCCCAGAGACCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75413 43 +    105888 GACCGGGGGCTCACCCAAAGACCAGGGGCTCGCCCAGAGACCG
i panPan2.chrUn_NW_014024225v1 I 2621 C 0
s gorGor5.CYUI01015925v1          106289 43 +    417917 GACCGGGGGCTCGCCCAAAGACCGGGGGCTCACCCAAAGACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28937 43 + 141252148 GACCAGGGGCTCACCCAAAGACTGGGGGCTCACCCAGGGACCG
i nomLeu3.chrX                 C 0 I 18
s rheMac8.chrX                     98975 41 + 149150640 TACC-GGGACTCACCCCAAGACC-GGGGCTCACCCAAATACCG
i rheMac8.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          107914 26 -   1025902 I
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=24207.000000
s hg38.chrX_KI270880v1_alt         37601 19 +    284869 GGGGCTCACCCAAACACCG
s panTro5.chrX                    137213 19 + 155549662 GGGGCTCACCCAGGGACCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75456 19 +    105888 GGGGCTCACCCAGGGACCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106332 19 +    417917 GGGACTCACCCAAAGACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     28998 19 + 141252148 GGGGCTCACCCAGGGACCG
i nomLeu3.chrX                 I 18 C 0
s rheMac8.chrX                     99016 17 + 149150640 -GGACTCACCCCAAGACC-
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107940 18 -   1025902 GGGGCTCACCCCAAGACC-
i cerAty1.NW_012001098v1       I 26 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e colAng1.NW_012115411v1          175808 31 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=14000.000000
s hg38.chrX_KI270880v1_alt         37620 5 +    284869 GGGGC
s panTro5.chrX                    137232 5 + 155549662 GGGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75475 5 +    105888 GGGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106351 5 +    417917 GGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29017 5 + 141252148 GGGGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99033 5 + 149150640 GGGGC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107958 5 -   1025902 GGGGC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          175839 5 +   1230721 GGGGC
i colAng1.NW_012115411v1       I 31 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          186610 2221 -    735872 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320 0 -    811265 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=27165.000000
s hg38.chrX_KI270880v1_alt         37625 9 +    284869 TCACCCAAA
s panTro5.chrX                    137237 9 + 155549662 TCACCCAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75480 9 +    105888 TCACCCAAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106356 9 +    417917 TCACCCAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29022 9 + 141252148 TCACCCAAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99038 9 + 149150640 TCACCCAAA
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107963 9 -   1025902 TCACCCCAA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          175844 9 +   1230721 TCACCCCAA
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          188831 9 -    735872 TCACCCGAA
i cebCap1.NW_016107987v1       I 2221 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320 0 -    811265 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=19804.000000
s hg38.chrX_KI270880v1_alt         37634 10 +    284869 CACCGGGGCT
s panTro5.chrX                    137246 10 + 155549662 CACCGGGGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75489 10 +    105888 CACCGGGGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     29031 10 + 141252148 GACTGGGGCT
i nomLeu3.chrX                 C 0 I 61
s rheMac8.chrX                     99047 10 + 149150640 TACCGGGGTT
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107972 10 -   1025902 GACCGGGGTT
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          175853 10 +   1230721 GACCAGGGTT
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          188840 10 -    735872 CACCGGGGCT
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365  0 +    417917 C

a score=71226.000000
s hg38.chrX_KI270880v1_alt         37644 48 +    284869 GCCTTCACACTCAGACGTCAGTCAGGTCAAGACCAGTCCTTCATGACC
s panTro5.chrX                    137256 48 + 155549662 GCCTTCACGCTCAGACGTCAGTCAGGTCAAGACCAGTACTTCATGACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75499 48 +    105888 GCCTTCACGCTCAGACGTCAGTCAGGTCAAGACCAGTACTTCATGACC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s rheMac8.chrX                     99057 46 + 149150640 GCCTTCACACTC--ATGTCCGTCAGGTCAGGACCAGCTCTTCACGGCC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          107982 46 -   1025902 GCCTTCACACTC--ATGTCCGTCAGGTCAAGACCAGCTCTTCGTGACC
i cerAty1.NW_012001098v1       C 0 I 129
s colAng1.NW_012115411v1          175863 48 +   1230721 GCCTTCACACTCAGACATCCGTCAGGTCAAGACCAGTTCTTCATGACC
i colAng1.NW_012115411v1       C 0 I 129
s cebCap1.NW_016107987v1          188850 48 -    735872 GCCTTAACACTCACACGTCCATCAGGCCAAGACCAGTCCTTCATAAGC
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e saiBol1.JH378345                121869  0 +    465904 C
e nomLeu3.chrX                     29041 61 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365  0 +    417917 C

a score=9814.000000
s hg38.chrX_KI270880v1_alt         37692 17 +    284869 ACAGACGCTACCCCTGC
s panTro5.chrX                    137304 17 + 155549662 GCAGACGCAACCCCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75547 17 +    105888 GCAGACGCAACCCCTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s rheMac8.chrX                     99103 10 + 149150640 -CAGA------CCCTGC
i rheMac8.chrX                 C 0 C 0
s cebCap1.NW_016107987v1          188898 17 -    735872 ACAGACACAACCCCTGC
i cebCap1.NW_016107987v1       C 0 I 7073
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e saiBol1.JH378345                121869  0 +    465904 C
e nomLeu3.chrX                     29041 61 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365  0 +    417917 C

a score=5741.000000
s hg38.chrX_KI270880v1_alt         37709 17 +    284869 GTGGCCGGGCAATG---------------------------CAC
s panTro5.chrX                    137321 44 + 155549662 GTGGCCGGGCAATGCACAGCTGATGCACAGAAGAAGCGTGACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75564 44 +    105888 GTGGCCGGGCAATGCACAGCTGATGCACAGAAGAAGCGTGACAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s rheMac8.chrX                     99113 17 + 149150640 CGGGCCTGGCAATG---------------------------CAC
i rheMac8.chrX                 C 0 I 34
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e nomLeu3.chrX                     29041 61 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365  0 +    417917 C

a score=3492.000000
s hg38.chrX_KI270880v1_alt         37726 12 +    284869 GCTGCGGTGGAA
s panTro5.chrX                    137365 12 + 155549662 GCTGCGGTGGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75608 12 +    105888 GCTGCGGTGGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e nomLeu3.chrX                     29041 61 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e rheMac8.chrX                     99130 34 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365  0 +    417917 C

a score=1671.000000
s hg38.chrX_KI270880v1_alt         37738 4 +    284869 CAGG
s panTro5.chrX                    137377 4 + 155549662 CAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75620 4 +    105888 CACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     29102 4 + 141252148 CAGG
i nomLeu3.chrX                 I 61 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                121869 0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320 0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e rheMac8.chrX                     99130 34 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          106365 0 +    417917 C

a score=8591.000000
s hg38.chrX_KI270880v1_alt         37742 10 +    284869 GACCGGGGGC
s panTro5.chrX                    137381 10 + 155549662 GACCGGGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75624 10 +    105888 GACCGGGAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106365 10 +    417917 GACCGAGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29106 10 + 141252148 GACCGGGGGC
i nomLeu3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                121869  0 +    465904 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320  0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e rheMac8.chrX                     99130 34 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=4177.000000
s hg38.chrX_KI270880v1_alt         37752 4 +    284869 TCAC
s panTro5.chrX                    137391 4 + 155549662 TCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75634 4 +    105888 TCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106375 4 +    417917 TCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29116 4 + 141252148 TCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99164 4 + 149150640 TGGA
i rheMac8.chrX                 I 34 C 0
s saiBol1.JH378345                121869 4 +    465904 TCGC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320 0 -    811265 C
e cerAty1.NW_012001098v1          108028 129 -   1025902 I
e colAng1.NW_012115411v1          175911 129 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=2424.000000
s hg38.chrX_KI270880v1_alt         37756 4 +    284869 -CCAA
s panTro5.chrX                    137395 4 + 155549662 -CCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75638 4 +    105888 -CCAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106379 3 +    417917 -CC-A
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29120 4 + 141252148 -CCAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99168 4 + 149150640 -CCGG
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          108157 4 -   1025902 -CCAG
i cerAty1.NW_012001098v1       I 129 C 0
s colAng1.NW_012115411v1          176040 4 +   1230721 -CCAG
i colAng1.NW_012115411v1       I 129 C 0
s saiBol1.JH378345                121873 4 +    465904 CCCA-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91320 0 -    811265 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=495098.000000
s hg38.chrX_KI270880v1_alt         37760 177 +    284869 GGACCGGGGCTGCCTTCACACTCAGACGTCAGTCAGGTCCATTCACCTTTTACAGGACCAAAGGAAAACCTCACTGCCCTCTCAATACACGCAGAAATACACATTTA--------------GCATCCCGGACAAACTTCAAGGCACTTTTATAATTTTAAAAAGT-AAACTGA-ggccaggcgtgatggctca
s panTro5.chrX                    137399 177 + 155549662 GGACCAGGGCTGCCTTCACACTCAGACGTCAGTCAGGTCCATTCACGTTTTACAGGACCAAAGGAAAACCTCACTGCCCCCTCAATACACGCAGAAATACACATCTA--------------GCATCCCAGACAAACTTCAAGGCACTTCTATAATTTTAAAAAGT-AAACTGA-ggccaggcgtggtggctca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75642 177 +    105888 GGACCAGGGCTGCCTTCACACTCAGACGTCAGTCAGGTCCATTCACCTTTTACAGGACCAAAGGAAAACCTCACTGCCCCCTCAATACACGCAGAAATACACATCTA--------------GCATCCCAGACAAACTTCAAGGCACTTCTATAATTTTAAAAAGT-AAACTGA-ggccaggcgtggtggctca
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106382 177 +    417917 GGACCGGGGCTGCCTTCACACTCAGAC-TCAGTCAGGTCCATTCACCTTTTACAGGACCAAAGGAAAACCTCACTGCCCCCTCAATACACGCAGAAATACACACCTA--------------GCATCCCGGACAAACTTCAAGGCACTTTTATAATTTTAAAAAGTAAAACTGA-ggccaggtgcggtggctca
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29124 178 + 141252148 GTACCGGGGCTGCCTTCACACTCAGACGTCAGTCAGGTCCATTCACCTTTTACAGGACCAAAGGAAAACCTCACTGCCCCCTCAATACATGCAGAAATACACGTCCA--------------GAATACTGGACAAACTTCCAGGCACACTTAGAATTTTAAACAGTAAAACTGA-ggcctggcgtggtggctca
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99172 183 + 149150640 GGACCGGGGCTGCCTTCATACTCAGATGTCAGTCAGGGCCATTCACCTTTTACAGGACCAAAGGA--AACCC-------CCTCAATACACACAGAAATACACGTCTAAGAATTCATGTCTAGAATACCAGACAAACTTCAAGGCACATTTGTAATTTTATAAAGTAAACCTGA-ggccaggcatggtggctca
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          108161 185 -   1025902 GGACCGGGGCTGCCTTCATACTCAGATGTCCGTCAGGGCCATTCACCTTTTACAGGACCAAAGGAAGAGCCC-------CCTCAATACACACAGAAATACACGTCTAAAACTACATGTCTAGAACACCGGACAAACTTCAAGGCACATTTGTCACTTTATAAAGTAAAACTGA-ggccaggcatggtggctca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91320 184 -    811265 GGACC-GGGCTGCCTTCACACTCAGATGTCCGTCAGGTCCATTCACCTTTTATAGGACCAAAGGAAAACCCC-------CCTCAGTACACGCAGAAATACACGTCTAAAAATACGTGTCTAGAATACCAGACAAACTTCAAGGCACATTTGTAATTTTAAAAAGTAAAACTGA-ggccaggcatggtggctca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          176044 166 +   1230721 GGGCCGGAGCTCCCTTCATACTCAGATGTCAGTCA-GTCCATTCACGTTTTACAGGACCAAAGGAAAACCCCGCTG---CCTCAATACACGCAGAAATACACGTCTGAAAAT----------------------ACTTCAAGGCACGTTGGTCATTTTAAAAAGTAAAACTGA-ggccgggcgtggtggctca
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                121877 176 +    465904 ACGCCGCGGCTGCCTTCAGAACCCGACGCCCGTCAGGCCCGTTCACC-TTGACGGGACCCCAGAGAAACCTC--AGCCACCTCAGTCCAGGCACAAACACACGCCGA--------------CGATACCGGACAAAGCTCAAGGCGCACCTGTCGTTTCAAAAGGGGAAAATGAGGGCCGGGTGCGGGGACTCA
i saiBol1.JH378345             C 0 I 4800
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=244950.000000
s hg38.chrX_KI270880v1_alt         37937 80 +    284869 tgcctgtcatcatcccagcaccatgagaggctgaggcaagaggatccttccagcccaggagttccagaccagcctgggc-----a
s panTro5.chrX                    137576 80 + 155549662 tgcctgtcatcaccccagcactttgagaggctgaggcaagaggacccttccagcccaggagttccagaccagcctgggc-----a
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75819 80 +    105888 tgcctgtcatcaccccagcactttgagaggctgaggcaagaggacccttccagcccaggagttccagaccagcctgggc-----a
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106559 80 +    417917 tgcccgtcatcatcccagcactttgagaggctgaggcaagaggacccttccagcccaggagttccagaccagcctggac-----a
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29302 85 + 141252148 tgcctgtcatcatcccagcactttgagaggctgaggccagaggacccttccggcccaggagttccagaccagcctgggctgttta
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99355 80 + 149150640 tgcccgtcatcgtcccagcactttgagaggctgagacaagagggcccttccagcccaggagttccagaccagcctgggc-----a
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          108346 80 -   1025902 tgcccgtcatcgtcccagcactttgagacgctgagacaagagggcccttccagcccaggagttccagaccagcctgggc-----a
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         91504 80 -    811265 cgcccgtcatcgccccagcacttcgagaggctgagacaagagggcccttccagcccaggagttccagaccagcctgggc-----a
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          176210 80 +   1230721 ggcctgtcatcgtgccagcactttcagaggctgagacaagagggcccttccagcccaggagttccagaccagcctgggc-----a
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=50717.000000
s hg38.chrX_KI270880v1_alt         38017 22 +    284869 acatagcagaaccctgtctcta
s panTro5.chrX                    137656 22 + 155549662 acatagcagaacactgtctcta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75899 22 +    105888 acatagcagaacactgtctcta
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106639 22 +    417917 acatagcagaaccctgtctcta
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29387 22 + 141252148 acacagcagaaccctgtctcta
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99435 22 + 149150640 acatagcggagccctgtctcta
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         91584 22 -    811265 acatagcggaaccctgtctcta
i chlSab2.chrUn_KE147541v1     C 0 I 3795
s colAng1.NW_012115411v1          176290 22 +   1230721 atgtagcggaaccctgtctcta
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-3393.000000
s hg38.chrX_KI270880v1_alt         38039 2 +    284869 cc
s panTro5.chrX                    137678 2 + 155549662 ct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75921 2 +    105888 ct
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106661 2 +    417917 tc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29409 2 + 141252148 ca
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99457 1 + 149150640 c-
i rheMac8.chrX                 C 0 I 5
s colAng1.NW_012115411v1          176312 1 +   1230721 c-
i colAng1.NW_012115411v1       C 0 I 1
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         91606 3795 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=22563.000000
s hg38.chrX_KI270880v1_alt         38041 13 +    284869 aaaaaag-aaaaaa
s panTro5.chrX                    137680 13 + 155549662 aaaaaag-agaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75923 13 +    105888 aaaaaag-agaaaa
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106663 13 +    417917 aaaaaag-aaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29411 14 + 141252148 aaaaaagaaaaaaa
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99463 13 + 149150640 aaaaaaa-aacaaa
i rheMac8.chrX                 I 5 C 0
s chlSab2.chrUn_KE147541v1         95401 13 -    811265 aaaaaga-acaaaa
i chlSab2.chrUn_KE147541v1     I 3795 C 0
s colAng1.NW_012115411v1          176314 13 +   1230721 gaaaaaa-aaaaaa
i colAng1.NW_012115411v1       I 1 I 1458
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=174849.000000
s hg38.chrX_KI270880v1_alt         38054 101 +    284869 tcagccaggtgtggtggcgggtgccagtagtcacggctactcgggagggctgaggtgggtggatcactggagcccaggaggtcgaggctgcagtgagctga
s panTro5.chrX                    137693  94 + 155549662 tcagccaggtgt-------ggtgccagtagtcacggctactcgggagggctgaggtgggtggatcactggagcccaggaggtcgaggctgcagtgagctga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     75936  94 +    105888 tcagccaggtgt-------ggtgccagtagtcacggctactcgggagggctgaggtgggtggatcactggagcccaggaggtcgaggctgcagtgagctga
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106676 101 +    417917 tcagccaggtgtggtggcgggtgccagtagtcacggctactcgggagggctgaggtgggtggatcactggagcccaggaggtcgaggctgcagtgagctga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29425 101 + 141252148 tcagccaggtgtgacggcgggtgccagtagtcacggctactcgggagggctgaggtgggtggatcaccggagcccaggtgatcgaggctgcagtgagctga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                     99476 101 + 149150640 tcagccaggtgtggtggcaggtgccacgggtcccggctactcgggagggctgaggtgggtggatcacttgagcccaggaggtcggggctgcagtgagctgA
i rheMac8.chrX                 C 0 I 602
s chlSab2.chrUn_KE147541v1         95414 101 -    811265 tcagccaggtgtggtggcaggtgccaggggtcccggttactcgggagggctgaggtgggtggatcccttgagcccaggaggttgaggctgcagtgagctga
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=220697.000000
s hg38.chrX_KI270880v1_alt         38155 202 +    284869 gatcatgccactgcactccagcccgggggcagaatgagaacctgtctcaaaaaaaa-------------cacaagaGCTCCCAGCAAACAAGAAACCAAAAGGGAAGGGGCCTCCTGAGTCTGATGAAGGACG--------CCAGGCAGGGCCGCTGCGTCACGGACGACTTGAGCCCGAGGCGGGAAGGGGCGTGCtctccacggctctccagcactgcact
s panTro5.chrX                    137787 202 + 155549662 gatcataccactgcactccagcccgggggcagaatgagaacctgtctcaaaaaaaa-------------aacaagaGCTCCCAGCAAACAAGAAACCAAAAGGGAAGGGGCCTCCTGAGTCTGATGAAGGACG--------CCAGGCAGGGCCGCTGCGTCAGGGACGACTTGAGCCCGaggcaggaaggggcgtgctctccacggctttccagcactgcact
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     76030 201 +    105888 gatcataccactgcactccagcccgggggcagaatgagaacctgtctcaaaaaaaa--------------acaagaGCTCCCAGCAAACAAGAAACCAAAAGGGAAGGGGCCTCCTGAGTCTGATGAAGGACG--------CCAGGCAGGGCCGCTGCGTCAGGGACGACTTGAGCCCGaggcaggaaggggcgtgctctccatggctttccagcactgcact
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106777 204 +    417917 gatcatgccactgcactccagcccgggggcagaatgagaacctgtctcaaaaaaaaa-----------aaacaagaGCTCCCAGCGAACAAGAAACCAAAAGGGAAGGGGCCTCCTGAGTCTGATGAAGGATG--------CCAGGCAGGGCCGCTGCGTCAGGGACGACTTGAGCCCGAGGCGGGAAGGGGCGTGCtctccacagctctccagcactgcacg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29526 192 + 141252148 gatcatgccactgcacaccagccggggggcagagtgagaacccgtctcaaaaaaaa--------------aca---------aacaaacgaggaaacgaaaGGGAAGGCGCCTCCTGAGTGTGATGAAGGACG--------CCAGGCAGGGCCGCTGCGTCAGGGACGACTTGAGCCCGAGGAGGGAAGGGGCGTGCTCTCCACGGCTCTCCAGCACTGCGCT
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         95515 219 -    811265 gatgatgtcactggactccagcccagggccagagtgagaacctggctcaaaaaaaaaaaaaagaaaagaaaaacaaGTTCCCAGCAAACAAGAA--CAGAAAGGGACGGGTCTCCGGAGTCTGACGAAGGACGCCGTGAAACCAGGCCGGG--GCTGTGCCAGGGGCGACGTGAGCCCAAGGCAGGGAGGGGCGTGCGCTCGGCGGCTGTCCAGCACCGCCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=278896.000000
s hg38.chrX_KI270880v1_alt         38357 357 +    284869 ggcaggccgagcctgtgtacagaaagtcagggaggagacaccgatgcagacgagaagag-aaaggctgaactgtgctcacctgaagatgacctgaccgtgcgttagagactctgccggacttaaaggttgagctggtagagccgatgactgagttaaacttggtcagaaaatgcaaagtccacatataaaacctaacagtgcttctcaacattcacaattgacaatcatattaaagtaaaaaaataccacgtacagtgtcatcagaaacaggaaatgcttgggtatcaatgtgatgaaccgtgaacaagaccaa--actacaaggcgtactgaaagaagtgaaagatgcctgaaataagg
s panTro5.chrX                    137989 357 + 155549662 ggggggccgagcctgtgtacagaaagtcagggaggagacacagatgcagacgagaagag-aagggctgaactgtgctcacctgaagatgacctgaccgtgcgttagagactctgccggacttaaaggttgagccggtagagccgatgactgagttaaacttggtcagaaaatgcaaagtccacatataaaacctaacagtgcttctcaacattcacaattgacaatcatattaaagtaaaaaaataccacgtacagtgtcatcagaaacaggaaatgcttgggtatcaatgtgatgaaccgtgaacaagaccaa--actacgaggcgtactgaaagaagtgaaagatgcctgaaataagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     76231 357 +    105888 ggggggccgagcctgtgtacagaaagtcagggaggagacacagatgcagacgagaagag-aagggctgaactgtgctcacctgaagatgacctgaccgtgcgttagagactctgccggacttaaaggttgagccggtagagccgatgactgagttaaacttggtcagaaaatgcaaagtccacatataaaacctaacagtgcttctcaacattcacaattgacaatcatattaaagtaaaaaaataccacgtacagtgtcatcagaaacaggaaatgcttgggtatcaatgtgatgaaccgtgaacaagaccaa--actacgaggcgtactgaaagaagtgaaagatgcctgaaataagg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          106981 355 +    417917 ggtgggccgagcctgtgtacagaaagtcagggaggagacacagaagcagacgagaagag-aagggctgaactgtgctcacctgaagatgacctgaccgtgcgtt--agactctgccggacttaaaggttgagctggtagagccgatgactgagttaaacttggtcagaaaatgcaaagtccacatataaaaactaacagtgcttctcaacattcacaattgacaatcatattaaagtaaaaaaatgccacatacagtgtcatcagaaacaggaaatgcttgggtatcaatgtgatgaaccgcgaacaagaccaa--actacgaggcgtactgaaagaactgaaagatgcctgaaataagg
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         95734 356 -    811265 GGCCGGACGAGCC---GGGCAGCAAGTCAGGGGAGAGGCACAGACGCACACGAGAGGAGAAAAGGCTGAACCGGGCTCGCCTGAAGATGTCCTCACCATGCGTTAGAGACTCTGCCGGCTGTAAAGACCGAGCCGGCagagctgacaagtgagctaaactcggtcag-aagtgcggagtccacatttaaaaaccaacagtgcttctcgccactcgccatggaacatcacgttaaattaaaaaaacgccacgtacggtgtgagcagaaatgggaaatgcttgggtatcgacgtgatgaaccacgaacaggaccaaacaccacgaggtgtcccgacagaaacgaaagacgcctgaaataagg
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     29718   0 + 141252148 C
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=267563.000000
s hg38.chrX_KI270880v1_alt         38714 219 +    284869 gagagctggaccgcgttcatgagacggaagcctcaatatggtcaagattcttccaagttcatctggagtcaacaggatgcccatgtaatcccagcaggctgtcgtagcaacggagggaccggctctaaaattcacacggtgggaacgaacaacggtgcagccactcgggaagacagcgtgcaggttccccagaaagccggaagtggaactgcACGCGCA
s panTro5.chrX                    138346 219 + 155549662 gagagctggaccgcgttcatgagacggaagcctcaatatggtcgagattcttccaagttcatctagagtcaacaggatgccgatgcaatcccagcaggctgtcatagcaacggaggggccggctctaaaattcacacggtgggaacgaacaacggcgcagccactcgggaagacagcgtgcaggttccccagaaagccggaagtggaactgcACACGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     76588 219 +    105888 gagagctggaccgcgttcatgagacggaagcctcaatatggtcgagattcttccaagttcatctagagtcaacaggatgccgatgcaatcccagcaggctgtcgtagcaacggaggggccggctctaaaattcacacggtgggaacgaacaacggcgcagccactcgggaagacagcgtgcaggttccccagaaagccggaagtggaactgcACACGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          107336 219 +    417917 gagagctggaccgcgttcatgagacggaagcctcaatatggtcaagattcttccaagttcatctagagtcaacaggatgccgacgtaatcccagcaggctgtcgtagccatggaggggccggttctaaaattcacacggtgggaacgaacaacagtgcagccactcgggaagacagcgtgcaggttccccagaaagccggaagtggaactgcACGCGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     29718 219 + 141252148 GAGAGCAGGactgcgttcatgacacggaagcctccatgtggtcaacattcttccaagttaatctagagtcaacaggatgccgatgcgatcccagcaggctgtcgtagcaatggaggggccgggtctaaaattcacatggtgggaacgaacaacggtgcagccactcaggaagacagcgtgcaggttcctcagaaagccggaagtggaactgcACACGCA
i nomLeu3.chrX                 C 0 I 331
s chlSab2.chrUn_KE147541v1         96090 217 -    811265 gagagctggaccgtgttcccgagacggaagcctcgagatggccaaggttcttccaagttaatctggagtcaacgggatgccagcgcggtcccagca-gctgctgtagccatggagggg-cggttctgaaattcacacggTGGGAACGGGAAACGGTGCGGCCGCTCGGGGCGACGGCGTGCAGGTTCCCCAGAAAGCCAGCAGTGGAACCGCACACGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=24433.000000
s hg38.chrX_KI270880v1_alt         38933 18 +    284869 CACGGAACACCACGCGAT
s panTro5.chrX                    138565 18 + 155549662 CACGGAACACCACGCGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     76807 18 +    105888 CACGGAACACCACGCGAT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          107555 18 +    417917 CACGGAACACCACGCGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30268 18 + 141252148 CACGGAACGCCACGCGAT
i nomLeu3.chrX                 I 331 C 0
s chlSab2.chrUn_KE147541v1         96307 18 -    811265 CACGGAATGCCACGCGAT
i chlSab2.chrUn_KE147541v1     C 0 I 280
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=22488.000000
s hg38.chrX_KI270880v1_alt         38951 34 +    284869 CCGGCCCTCCACA-------------------------------------CACGCACATGGAACACCGTGC
s panTro5.chrX                    138583 34 + 155549662 CCGGCCCTCCACA-------------------------------------CACGCACATGGAACACCGTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     76825 34 +    105888 CCGGCCCTCCACA-------------------------------------CACGCACATGGAACACCGTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          107573 71 +    417917 CCGGCCCTCCGCACACGCACACGGAACACCACGCGATCCAGCCCTCCGCGCACGCACACGGAACACCGTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30286 34 + 141252148 CTGGCCCTCTGCA-------------------------------------CACGCACGCGGAACGCCACGC
i nomLeu3.chrX                 C 0 I 198
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=635282.000000
s hg38.chrX_KI270880v1_alt         38985 1174 +    284869 TGTATATGCCACAAACGTCTCCGAGTTCTGTGCTCCAAATGGTTACGGTGGTGAattctgttgtgtgaattttcccataataaaaaaaagtgcctgctgtctgattctgtttacataaaattccagaaaattccggctaatctatattgacagaaaggaggcctgaggtagcgtgggatgagggcaggTGCGCGTCAGAAAGCAGCAGAGAAAAGTCCAGCGCACGTGCCCGCTCAAGCGCAAGGATGCAGGGACGCCTATTGTCTTGGTGCTGTGGATAGTTTCATGGGTGGGTACAGACGTCAAAGCTCATTGAATTGTACCTTCCACACGCACCATGCATCCCACATCAGTTATATCTCAACACAGCTGCCCCAAAATGAaaaaaaggcaaactgatgagaaagaaacacgtaaggtggtcaacacgtacatcagggaaatgaggagtgcagccaggacgggacgcctgcacacgcacagaacggctaaaggcaaagcgtgtggccacgtgcccgcaggggtcaacgctgctgcctggaaatgcgtcactcagggccaccccggaagcaggg------ttttttg--ttttttgtttttttgcgtagagacacagtcttgctcagtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcccaggttcaagcgattttcctgtctcagcctcccgagtagctggaatgacaggtgcccgccaccatacctggctaatttttgtatttttagtagagatgtggtttcatcatgttggccaggctggcctcgaactcctgacctcaggtgatctgcctacctcagcctcccgaagtgctgggattagtggagtgagccaccactcctgggccctggaagcagttttatagcttcttacaaaactaaacatgtggccaccagatgaggcagagctcacctctgcggtattaatcacctcaggaaaatgcaagcatgtctgcgtaaatcagtgcacagacacacagcagctttactcacaagaagcaaaaaccaaagcaaccagacgtctatcaaccctggaacaggggagagatggagcacacacacagcagaagctactcagtgatagaaaagaaACTGCCCATACGGCCAGGGACACATAGTGAGCCCCACAGTATCCACA
s panTro5.chrX                    138617 1175 + 155549662 TGTATATGCAACAAACGTCTCCGAGTTCTGTGCTCCaaatggttacggtggtgaattctgttatgtgaattttaccataat-aaaaaaagtgcctgctgtctgattctgtttacataaaattccagaaaattccggctaatccatattgacagaaaggaggcctgaggtagtgtgggatgagggcaggTGCGCGTCAGAAAGCAGCAGAGAAAAGTCCAGCGCACGTGCCCGCTCAAGCGCAAGGATGCAGGGACGCCTATTGTCTTGGTGCTGTGGATAGTTTCATGGGTGGGTACGGACGTCAAAGCTCATTGAACTGTACCTTCCACACGCACCATGCATCCCACATCAGTTATATCTCAACACAGCTGCCCCGAAATGAAAAAAAGGCAAACTGATGAGAAAGAAACACGTAAGGTGGTCAACACGTACATCAGGGAAATGAGGAGCGCAGCCAGGACAGGACGCCTGCACACACGCAGAACGGCTAAAGGCAAAGCGTGTGGCCACGTGCCCGCAGGGGTCAACGCTGCTGCCTGGAAACGCGTCACTCAGGGCCACCCCGGAAGCAGGt------ttttttgttttttttgtttttttgcctagagacacagtcttgctcagtcgcccaggctggagtgcagcggtgcgatcttggctcactgcaacctccacctcccgggttcaagcgattttcctgtctcagcctcccgagtagctggaatgacaggcgcccgccagcatacctggctaatttttgtatttttagtagagatggggtttcatcatgttggccaggctggcctcgaactcctgacctcaggtgatctgcctacctcagcctcccgaagtgctgggattagtggagtgagccaccactcctggGCCCTggaagcagttttatagcttcttacaaaactaaacatgtggccaccagatgaggcagagctcacctctgcggtattaatcacctcaggaaaatgcaagcatgtctgcgtaaatcagtgcacagacacacagcagctttactcacaagaagcaaaaaccaaagcaaccagacgtctatcaaccctggaacaggggagagatggagcacacacacagcagaagctactcagtgatagaaaagaaACTGCCCATACGGCCAGGGACACACAGCGAGCCCCACAGTATCCACA
i panTro5.chrX                 C 0 I 139
s panPan2.chrUn_NW_014024225v1     76859 1174 +    105888 TGTATATGCAACAAACGTCTCCGAGTTCTGTGCTCCaaatggttacggtggtgaattctgttatgtgaattttaccataat-aaaaaaagtgcctgctgtctgattctgtttacataaaattccagaaaattccggctaatccatattgacagaaaggaggcctgaggtagcgtgggatgagggcaggTGCGCGTCAGAAAGCAGCAGAGAAAAGTCCAGCGCACGTGCCCGCTCAAGCGCAAGGATGCAGGGACGCCTATTGTCTTGGTGCTGTGGATAGTTTCATGGGTGGGTACGGACGTCAAAGCTCATTGAACTGTACCTTCCACACGCACCATGCATCCCACATCAGTTATATCTCAACACAGCTGCCCCGAAATGAAAAAAAGGCAAACTGATGAGAAAGAAACACGTAAGGTGGTCAACACGTACATCAGGGAAATGAGGAGCGCAGCCAGGACAGGACGCCTGCACACACGCAGAACGGCTAAAGGCAAAGTGTGTGGCCACGTGCCCGCAGGGGTCAACGCTGCTGCCTGGAAACGCGTCACTCAGGGCCACCCCGGAAGCAGgt------ttttttg-tttttttgtttttttgcctagagacacagtcttgctcagtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcccgggttcaagcgattttcctgtctcagcctcccgagtagctggaatgacaggcgcccgccagcatacctggctaatttttgtatttttagtagagatggggtttcatcatgttggccaggctggcctcgaactcctgacctcaggtgatctgcctacctcagcctcccgaagtgctgggattagtggagtgagccaccactcctggGCCCTggaagcagttttatagcttcttacaaaactaaacatgtggccaccagatgaggcagagctcacctctgcggtattaatcacctcaggaaaatgcaagcatgtctgcgtaaatcagtgcacagacacacagcagctttactcacaagaagcaaaaaccaaagcaaccagacgtctatcaaccctggaacaggggagagatggagcacacacacagcagaagctactcagtgatagaaaagaaACTGCCCATACGGCCAGGGACACACAGCGAGCCCCACAGTATCCACA
i panPan2.chrUn_NW_014024225v1 C 0 I 139
s gorGor5.CYUI01015925v1          107644 1170 +    417917 TGTATATGCAACAAACGTCTCCGAGTTCTGTGCTCCAAATGGTTACGGTGGTGAATTCTGTTATGTGAATTTTCCCATAAT-AaaaaaagtgcctgctgtctgattctgtttacataaaattctagaaaattctggctaatctatattgacagaaaggtggcctgaggtagcgtgggatgagggcgggTGCGCGTCAGAAAGCAGCAGAGAAAAGTCCAGCGCACGTGCCCGCTCAAGCGCAAGGATGCAGGGA----------CTTGGTGCTGTGGATAGTTTCATGGGTGGGTACGGACATCAAAGCTCATTGAACTGTACCTTCCACACGCACCATGCATCCCACATCAGTTATATCTCAACACAGCTGCCCCAAAATGAAAAAAAGGCAAACTGATGAGAAAGAAACACGTAAGGTGGTCAACACGTACATCAGGGAAATGAGGAGCGCAGCCAGGACGGGACGCCTGCACACACGCAGAACGGCTAAAGGCAAAGCGTGTGGCCACGTGCCCGCAGGGGTCAACGCTGCTGCTTGGAAACGCGTCACTCAGGGCCACCCCGGAAGCACGttttttgttttttg-tttttttttttttttgcctggagacacagtcttgcttagttgcccaggcgggagtgcagtgctgcgatattggctcactgcaacctctgcctcccgggttgaatcgattctcctgcctcagcctcccgagcagctgggatgacaggcgtccgccaccatacctggctagtttttgtatttttaatagagatggggtttcatcatgttggccaggctggcctcgaactcctgacctcaggtgatctgcctacctcagcctcccgaagtgctgggattagtggagtgagccaccacTCTTGGGCCCTggaagcagttttatagcttcttacaaaactaaacatgtggccaccagatgaggcagagctcacctctgcggtattaatcacctcaggaaaacgcaagcacgtctgcataaatcagtgcacagacacacagcagctttactcacaacaggcaaaaaccaaagcaaccagacgtctatcgaccccggaacaggggagagatggagcacacacacagcagaagctactcagtgatagaaaagaaactgcctatacggccagggacacatagggagCCCCACAGTATCCACG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1           10692   19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320  198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325  280 -    811265 I
e cerAty1.NW_012001098v1          108426    0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577  602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=13406.000000
s hg38.chrX_KI270880v1_alt         40159 31 +    284869 CCCTGGCCAGCCACACGG-GAGCCCCACGGTA
s panTro5.chrX                    139931 32 + 155549662 CCCCAGCCAGCCACACGGCGAGCCCCACAGTA
i panTro5.chrX                 I 139 C 0
s panPan2.chrUn_NW_014024225v1     78172 32 +    105888 CCCCAGCCAGCCACACGGCGAGCCCCACAGTA
i panPan2.chrUn_NW_014024225v1 I 139 C 0
s gorGor5.CYUI01015925v1          108814 31 +    417917 CCCTGGCCAGCCACACAT-GAGCGCCACAGTA
i gorGor5.CYUI01015925v1       C 0 I 315
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577 602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=676851.000000
s hg38.chrX_KI270880v1_alt         40190 1293 +    284869 ACCACGCCTTGGCCAGCCACACAGCGAGCCCCACAGTATCCACACCCC-GCCAGCCACACAGCGAGCCCCACGGTAACCACGCCTTCGCCAGCCACACAGCGA--GCCCCACAGTATCCACACCACAGgacttaatcagtcctcaacacacacacatagcgaaacatcttgctgtaccctgtatacacaaatattacttgtccattcaaaataaaatttaaaataaagatgctgccaggaagaagttagaaaccacagacaaaatgctccaagagtcctcatgtgaaattctaagagaggcaaagctacagcgaccggaagcacatctgcagctggcccgggccagggagaaaagaggggaatgatgaggtg------------caaaaggaggcacgtgggacacccgcggcaggtgacaaacggccggtcctgcctatgaggatggatacccaggtgtgtgctttaccaaaatggatcaaattgtacacttaaaattggtgaatcttagggtgtgtaattatatgacaatacagctggccaaacaaaaaactattcaataaactaaaaaaaatgacagaaggaagtgtatgtaaaaaagatgaccatagatattcatgagagaaagaactgaaataatctgtaacactgacagctgctttactgaaagagatatacgttagtgtgtagcatgacggatcaagaaaggaaccggaaataaatgattctgtcaagaaagtgtctatgtatgatgcagatacgatcaagattttgtaaatcgtacaagacaaggaaaagctttagagcaagaaatttctaagttacgcaaaaaat--ttttagaaaaaatgtaaatcatcaaaatagtctccataaatgaaaaccctgaattagccaacaacgtttgaaggaaattaaCAAAGAGAAAAGTGTGTTTTCCTGTGGGGGCAGCTGAGGGGGTGGAGTTTGGTGGAGGTGAAGGAGCTGATGACTCTGTCTCAAACGGCTTCAGAGAAAACACAGAGGAGTGACAATGATGAAAGGGAGGAAATGATGTATGAGATCAGCCCTGACTCACACAGACAGGAAGAACCGGGCCAGGAGAAGGCACACACGGACCTCGCTGCACGGCCACGGCTAAGATCCACGGGGGGACCCCCCTCATCAAACTCAAAGTCCCCTCAGACGTGAGTTCTCAAGCAGCCGCCGGCCAAAGTCCACCCGCCTGACAACACGCGTGTGGAGCTGTGACTCCAGGCCCTCATTCAGTCACTCACGCGACGGGGAGAACTCGAAACGGCA--------------------GTGA---------CACCC
s panTro5.chrX                    139963 1331 + 155549662 ACCATGCCCTGGCCAGCCACAC-GCGAGCTCCACAGTATCCACACCCC-ACCAGACACACAGTGAACCCCACAGACACCATGCCCCGGCCAGCCACACAGCTATAGCCCCACACTATCCACACCACAGgacttaatcagtcctcaacacacaca--tagcgaaacatcttgctgtaccctgtatacacaaatattacttgtccattcaaaataaaatttaaaataaagatgctgccaggaagaagtgagaaaccacagacaaaatgctccaagagtcctcatgtgaaattctaagagaggcaaagctacagcgaccggaagcacatctgcggctggcccgggccagggagaaaagaggggactgatgaggcggaaaaggaggcgcaaaaggaggcacgcgggacacccgcggcaggtgacaaacggccggtcctgcctatgaggatggatacccaggtgtgtgctttaccaaaacggatcaaattgtacacttaaaattggtgaatcttagggtgtgtaattatatgacaatacagctgaCAAAACAAAAAACTATTCAATAAACTAAAAAAAATGACAGAAGGAAGTGTATGTAAAAAAGATGACCGTAGAAATTCATGAGGGAAAGAACTGAAATAATCTGTAACACTGACAGGTGCTT-ATTGAAAGAGATAAACGTTAGTGTGTAGCATGACGGATCAAGAAAGGAACCAGGAATAAATGATTCTGTCAAGAAAGTGTCTATATATGATGCAGATACGATCAAGATTTTGTAAATCGTACAAGACAAGGAAAAGCTTTAGAGCAAGAAATTTCTAAGTTATGCAAAAAAT--TTTTAGAAAAAATGTAAATCATCAAAATAGTCTCCATAAATGAAAACCTTGAATTAGCCAACAACGTTTGAAGGAAATTAACAATGAGAAAAGTGTGTTTTCCTGTGGGGGCAGCTGAGGGGGTGGAGTTTGGTGGAGGTGAAGGAGCTGATGACTCTGTTTCAAACGGCTTCAGAGAAAACACAGAGGAGTGAAAATGATGAAAGGGAG-AAGTGATGTATGAGATCAGCCCTGACTCACACAGACAGGAAGAACCGGGCCAGGAGAAGGCACACACGGACCTCACTGCACGGCCACGGCTAAGATCCACGGCGGGACGCCCCTCATCAAACTCAAAGTCCCCTCAGACATGAGTTCTCAAGCAGCCGCCGGCCAAAGTCCACCCGCCTGACAACACGCGTGTGGAGCTGTGACTCCAGGCCGTCACTCAGTCACTCACGCGACGGGAAGAACTCGAAACGGCGCGGGCCTCACGCAGGGAAGCGTGATGATGATGCCACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     78204 1332 +    105888 ACCATGCCCTGGCCAGCCACAC-GCGAGCTCCACAGTATCCACACCCC-ACCAGACACACAGTGAACCCCACAGACACCATGCCCCGGCCAGCCACACAGCTATAGCCCCACACTATCCACACCACAGgacttaatcagtcctcaacacacaca--tagcgaaacatcttgctgtaccctgtatacacaaatattacttgtccattcaaaataaaatttaaaataaagatgctgccaggaagaagtgagaaaccacagacaaaatgctccaagagtcctcatgtgaaattctaagagaggcaaagctacagcgaccggaagcacatctgcggctggcccgggccagggagaaaagaggggactgatgaggcggaaaaggaggcgcaaaaggaggcacgcgggacacccgcggcaggtgacaaatggccggtcctgcctatgaggatggatacccaggtgtgtgctttaccaaaacggatcaaattgtacacttaaaattggtgaatcttagggtgtgtaattatatgacaatacagctgaCAAAACAAAAAACTATTCAATAAACTAAAAAAAATGACAGAAGGAAGTGTATGTAAAAAAGATGACCGTAGAAATTCATGAGGGAAAGAACTGAAATAATCTGTAACACTGACAGGTGCTT-ATTGAAAGAGATAAACGTTAGTGTGTAGCATGACGGATCAAGAAAGGAACCAGGAATAAATGATTCTGTCAAGAAAGTGTCTATATATGATGCAGATACGATCAAGATTTTGTAAATCGTACAAGACAAGGAAAAGCTTTAGAGCAAGAAATTTCTAAGTTATGCAAAAAAT--TTTTAGAAAAAATGTAAATCATCAAAATAGTCTCCATAAATGAAAACCTTGAATTAGCCAACAACGTTTGAAGGAAATTAACAAAGAGAAAAGTGTGTTTTCCTGTGGGGGCAGCTGAGGGGGTGGAGTTTGGTGGAGGTGAAGGAGCTGATGACTCTGTTTCAAACGGCTTCAGAGAAAACACAGAGGAGTGAAAATGATGAAAGGGAGGAAGTGATGTATGAGATCAGCCCTGACTCACACAGACAGGAAGAACCGGGCCAGGAGAAGGCACACACGGACCTCACTGCACGGCCACGGCTAAGATCCACGGCGGGACGCCCCTCATCAAACTCAAAGTCCCCTCAGACATGAGTTCTCAAGCAGCCGCCGGCCAAAGTCCACCCGCCTGACAACACGCGTGTGGAGCTGTGACTCCCGGCCCTCACTCAGTCACTCACGCGACGGGAAGAACTCGAAACGGCGCGGGCCTCACGCAGGGAAGCGTGATGATGATGCCACCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          109160 1301 +    417917 ACCACGCCCCAGCCAGCCACAC-GCGAGCTCCACAGTATCCACACCCCGGCCAGCCACACGG-GAGCCCCACGGTAAACACGCCTTGGCCAGCCACACAGCTATAGCCCCACAGTATCCACACCACAGgacttaatcagtcctcaacacacaca--tagcgaaacatcttgctgtaccctgtatacacaaatattacttgtccattcaaaataaaaTTTAAAATAAAGGTGCTGCCAggaagaagtgagaaaccacagacaaaatgctccaagagtcctcatgtgaaattctaagagaggcaaagctacagtgaccggaagcacatctgcggctggcccgggccagggagaaaagaggggactggtgaggcacaaaaggaggtgcaaaaggaggcacgggggacacccgcggcaggtgacaaacggccggtcctgcctgtgggggtggatacccaggtatgtgctttaccaaaacggatcaaattgcacacttaaaattggtgaatcttagggtgtgtaattatatgacaatacagctgaCAAAACAAAAAACTATTCAATAAACTAAAAAAAATGACAGAAGGAAGTGTATGTAAAAAAGATGACCGTAGAAATTCATGAGGGAAACAACTGAAATAATCTGTAACACTGACAGCTGGTT-ACTGAAAGAGATATACGTTACTGTGTAGCATGACGGATCAAGAAAGGAACCAGAAATAAATGATTCTGTCAAGAAAGTGTCTATATATGATGCAGATACGATCAAGATTTTGTAAATCATACAAGAC----AAAAGCTTTAGAGCAAGAAATTTCTAAGTTATGCAAAAAATTGTTTTAGAAAACATGTAAATCATCAAAATAGTCTCAATAAATGAAAACGTTGAATTAGCCAACAACGTTTGAAGGAAATTAACAAAGAGAAAGGTGTGTTTTCCTGTGGGGGCAGCCTAGGGGGTAGAGTTTGGTGGAGGGGAAGGAGCTGATGATTCTGTCTCAAACGGCTTCAGAGAAAACACAGAGGAGTGAAAATGATGAAAGGGAGGAAATGATGTATGAGATCAGCCCTGACTCACACAGACAGGAAGAACCGGGCCAGGAGAAGGCGCACACGGACCTCACTGCACGGCCACGGCTACGATCCACGGGGGGACCCCCCTCATCAAACTCAAAGTCCCCTCAGACGTGAGTTCTCAAGCAGCCTCCGGCCAAAGTCCACCCGCCTGACAACACGCGTGTGGAGCTGTGACTCCAGGCCCTCGCTCAGTCACTCACGCGACGGGGAGAACTCCAAACGGCA--------------------GCGA---------CACCC
i gorGor5.CYUI01015925v1       I 315 C 0
e manLeu1.NW_012108508v1           10692   19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320  198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325  280 -    811265 I
e cerAty1.NW_012001098v1          108426    0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                     99577  602 + 149150640 I
e macNem1.NW_012017243v1          144248 2335 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=356554.000000
s hg38.chrX_KI270880v1_alt         41483 304 +    284869 CTACTCGTTCGTCCCCTGGGCCGGGGGCCCGGCTCACAGAAAACCGTCCCAAA---GGCACACGATGGAGACGTGGACGGACATCTGCAGGTGGCGGCGAGCTGGGCGCCACCGAGACAGGCTCAGCAGCCTTGGCGGGGAAGCTGAAGTTTGCCTGCGGCCCCCACACACGCGGGACGCTCACAGGGTTCTGCCGCCACAGCGCAGGTGGATTAAGTCGCGACAGCGCACACCCTGCTGGCCTCTGCCCACAGTCACGGTGGGTGCTCGAGCACCATGCTCTCCGCCTG-CAGGGCCGGGTCGGTGC
s panTro5.chrX                    141294 303 + 155549662 CTACTCGTTCGTCCCCTGGGCCGGGGGCCCGGCTCACAGAAAACCGTCCCAAA---GGCACACGATGGAGACGTGGACGGACATCTGCACATGGCGGCGAGCTGGGCGCCACCGAGACAGACTCAGCAGCCTT-TCGGGGAAGCTGAAGTTTGCCTGCGGCCCCCACACACGCTGGACGCTCACAGCGTTCTGCCGCCACAGCGCAGGTGGATTAAGTGGCGACAGTGCACACCCTGCTGGCCTCTGCCCACAGTCACGGTGGGTGCCCGAGCACCATGCTCTCCGCCTG-CAGGGCCGGGTCGGTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     79536 303 +    105888 CTACTCGTTCGGCCCCTGGGCCGGGGGCCCGGCTCACAGAAAACCGTCCCAAA---GGCACACGATGGAGACGTGGACGGACATCTGCACATGGCGGCGAGCTGGGCGCCACCGAGACAGGCCCAGCAGCCTC-TCGGGGAAGCTGAAGTTTGCCTGCGGCCCCCACACACGCTGGACGCTCACAGCGTTCTGCCGCCACAGCGCAGGTGGATTAAGTCGCGACAGTGCACACCCTGCTGGCCTCTGCCCACAGTCACGGTGGGTGCCCGAGCACCATGCTCTCCGCCTG-CAGGGCCGGGTCGCTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          110461 306 +    417917 CTACTCGTTCGTCCCCTGGGCCGGGGGCTCGGCTCACAGAAAACCGTCCCAAATTGGGCACACGATGGAGACGTGGACGCACATCTGCACATGGCGGCGAGCTGGGCGCCACTGAGACAGGCTCAGCGGCCTT-TCGGGGAAGCTGAAGTTTGCCTGCGGCCCCCACACAGGCTGGACGCTCACAGGGTTCTGCCGCCACAGCGCAGGTGCGTTAAGTCGCGACAGTGCACACCCTGCTGGCCTCTGCCCACAGTCACCGTGGGTGTCCGAGCACCATGCTCTCCGCCTG-CAGGGCCGGGTCGGTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    100179 302 + 149150640 CTACACGTTCGTCCCCTGGTCC-GGGGCCCGGCTCACAGAAAACCGTCCCAAA---GGCACACGGCGGAGACGGGGACGGACGCCCGCACGTGGCGGTGAGCTGGGCGCCCCCCAGACAGGCTCAGCGGCCTT--GGGGGGAGCGGAACATGGCCTGCGGCCCCCGCACATGCGGGACACTCACGGGGTTCTGCTGCCACAGCGCAGGTGCATTAAGTCACAAAAGCACAGCCCCTGCCGGCCTCTGCCCACAGTCACCGTGGGGGCCCGAGCGCCACGCGCTCTGCCTGCCGGGGCCGGGCCGGTGC
i rheMac8.chrX                 I 602 I 19
s macNem1.NW_012017243v1          146583 301 +  25972781 CTACACGTTCGTCCCCTGGTCC-GGGGCCCGGCTCACAGAAAACCGTCCCAAA---GGCACACGACGGAGACGGGGACGGACGCCCGCACGTGGCGGTGAGCTGGGCGCCACCCAGACAGGCTCAGCGGCCTT---GGGGGAGCGGAACTTGGCCTGCGGCCCCCGCACATGCGGGACACTCACGGGGTTCTGCTGCCACAGCGCAGGTGCATTAAGTCACGAAAGCACAGCCCCTGCCGGCCTCGGCCCCCAGTCACCGTGGGGGCCCGAGCACCACGCTCTCTGCCTGCCGGGGCCGGGCCGGTGC
i macNem1.NW_012017243v1       I 2335 I 1281
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=406308.000000
s hg38.chrX_KI270880v1_alt         41787 334 +    284869 GTGCAGGCACAGTGGGGCCTGTGGAGGTGTCTCTCGGACTCCCAGCGGTGCAGACGCTGCAAGCGACACAACTTCAGTCTCAGAGCTCTCCCCTGCCCCGCTGGGTCACACCCAGGTCACCCTGCTTCTCTGGGGCGTCGAAGACAACGACAAAACTTGCTTTTTACCACCAAACGTGACATCCAGCCAACGGACCAGGTTCTTTCAAGTCTTAAAGCCTCACTACCTTAGACGGCCACCAAGGCCAGTGCCGCTGTGCGTGGAAGCGAGGTGACACCGAGAACTGAGTCCTGGAAGGAAAATGACATGAAACGCGCACATGAGAACCAGGCGC
s panTro5.chrX                    141597 334 + 155549662 GTGCAGGCACAGTGGGGCCTGTGGAGGTGTCTCTCGGACTCccagcggtgcagacactgcaagcgacacaacttcagtctcagagctctcccctgccccgctgggtcacacccaggtcaccctgcttctctggggcatcgaagacaacgacaaaacttgctttttaccaccaaatgtgacatccagccaacggaccaggttctttcaagtcttaaagcctcactaccttagacggccaccaaggccagtgccgctgtgcgtggaagcgaggtgacaccgagaactgagtcctggaaggaaaacgacatgaagcgcgcacgtgagaacCAGGTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     79839 334 +    105888 GTGCAGGCACAGTGGGGCCTGTGGAGGTGTCTCTCGGACTCccagcggtgcagacactgcaagcgacacaacttcagtctcagagctctcccctgccccgctgggtcacacccaggtcaccctgcttctctggggcatcgaagacaacgacaaaacttgctttttaccaccaaacgtgacatccagccaacggaccaggttctttcaagtcttaaagcctcactaccttagacggccaccaaggccagtgccgctgtgcgtggaagcgaggtgacaccgagaactgagtcctggaaggaaaacgacatgaagcgcgcacgtgagaacCAGGTGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          110767 334 +    417917 GTGCAGGGACAGTGGGGCCCGTGGAGGTGTCTCTCGGACTGccagcggtgcagacactgcaagccacacaacttcagtctcagagctctcccctgccccgctgggtcacacccaggtcaccctgcttctctggggcatcaaagacaacgagaaaacttgctttttaccaccaaacgtgacgtccagccaacggaccgagttctttcaagtcttaaagcctcactaccttagacggccaccaaggccagtgctgctgtgcgtggaagcgaggtgacactgagaactgagtcctggaaggaaaacgacatgaagcgcgcacgtgagaacCAGGTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    100500 332 + 149150640 GTGCACGGACAGCAGGGCCTGTGGAGGTGTCCCTCAGACTCccagcggtgcagacactgcaagcaagagaacttcagtctcagagctctcccc-gtcccgctgggtcacacccagctcaccctgcttctcgggggcatcgaagaccatgagaaaacttgctttttcccaccaaacgtgacacccggccaacgggccaagttctttcaagcctggaagcctcaccaccttcgacggCCACCAAGGCCGCCGCCGCCGCGCCT-GAAGTGAGGTCACGTGGAAAGCTGCGTCCCGGGAGGAAAACGACACGAAGCGTGCACGTGAGAACCAGGCGC
i rheMac8.chrX                 I 19 C 0
s macNem1.NW_012017243v1          148165 333 +  25972781 GTGCACGGACGGCAGGGCCTGTGGAGGTGTCCCTCGGACTCccagcggtgcggacactgcaagcaagagaacttcagtctcagagctctcccctgtcccacggggtcacacccagctcaccctgcttctcgggggcatcgaagaccatgagaaaacttgctttttcccaccaaacgtgacacccggccaacgggccaagttctttcaagcctgaaagcctcaccaccttcgacggccaccaaggccgccgccgccgcgcct-gaagggaggtcacgcggaaagctgcgtcccgggaggaaaacgacacggagcgtgcacgtgagaaccaggcgc
i macNem1.NW_012017243v1       I 1281 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=12874.000000
s hg38.chrX_KI270880v1_alt         42121 14 +    284869 CGAGGCGGGGAAGC
s panTro5.chrX                    141931 14 + 155549662 CGAGGCGGGGAAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     80173 14 +    105888 CGAGGCGGGGAAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          111101 14 +    417917 CGAGGCGGGGAAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          148498 14 +  25972781 cgtggcggggaagc
i macNem1.NW_012017243v1       C 0 I 1198
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832  0 + 149150640 C
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=3546.000000
s hg38.chrX_KI270880v1_alt         42135 6 +    284869 ACCGCG
s panTro5.chrX                    141945 6 + 155549662 ACCGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     80187 6 +    105888 ACCGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          111115 6 +    417917 ACCGCG
i gorGor5.CYUI01015925v1       C 0 I 230
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=2272.000000
s hg38.chrX_KI270880v1_alt         42141 9 +    284869 GAGGGGGGG
s panTro5.chrX                    141951 9 + 155549662 GCggggggg
i panTro5.chrX                 C 0 I 25805
s panPan2.chrUn_NW_014024225v1     80193 9 +    105888 GCGGGGGGG
i panPan2.chrUn_NW_014024225v1 C 0 I 48
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111121 230 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt         42150 5 +    284869 TGGCC
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                    141960 25805 + 155549662 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111121 230 +    417917 I
e panPan2.chrUn_NW_014024225v1     80202 48 +    105888 I

a score=200.000000
s hg38.chrX_KI270880v1_alt         42155 2 +    284869 GC
s panTro5.chrX                 155393150 2 - 155549662 GC
i panTro5.chrX                 n 25805 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111121 230 +    417917 I
e panPan2.chrUn_NW_014024225v1     80202 48 +    105888 I

a score=4160.000000
s hg38.chrX_KI270880v1_alt         42157 23 +    284869 TGTGGGGGGCGGCACCACGGTGG
s panTro5.chrX                 155393152 23 - 155549662 TGTGGGGGGCGGCACCACGGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     80250 22 +    105888 TGTGGGCGGCGAC-CGACGGGGG
i panPan2.chrUn_NW_014024225v1 I 48 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832  0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111121 230 +    417917 I

a score=45639.000000
s hg38.chrX_KI270880v1_alt         42180 110 +    284869 G---GGGAGGCGCCGTTGGGGAGAAGCACCGTGGGGATGAAGCACCGCGTGGGGAGGGGCGCTGTGGCGGGGAAGCA------------------------------------------------CCGTGGGGACGGGCGCCCTGGCGGGGAAGCACCGCG
s panTro5.chrX                 155393175 113 - 155549662 GTGGGGGGGGCGCCGTGGAGGGGAAGCACCGTGGGGATGAAGCACCGCGTGGGGAGGGGCGCTGCGGCGGGGAAGCA------------------------------------------------TCGTGGGGAAGGGCGCCCTGGCGGGGAAGCACCGCG
i panTro5.chrX                 C 0 I 1
s panPan2.chrUn_NW_014024225v1     80272 111 +    105888 T--GGGGAGGCGCCGTGGAGGGGAAGCACCGTGGGGATGAAGCACCGCGTGGGGAGGGGCGCTGCGGCGGGGAAGCA------------------------------------------------TCGTGGGGAAGGGCGCCCTGGCGGGGAAGCACCGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          111351 156 +    417917 ---GGGGAAGCACCGTGGGGGAGGGGCACCGTGGCGGGGAAGCAC--CGTGGGGGGGGGCGCCGCGGCGGGGAAGCACCGTGGCGGGGGGGCCCGCGGTGGGGAAGCACCGTGTTGGGGGGGGCGCCGTGGGGGGGGGCGCCATGGCGGGGAAGCACCGTG
i gorGor5.CYUI01015925v1       I 230 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832   0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=90.000000
s hg38.chrX_KI270880v1_alt         42290 7 +    284869 GCGGGGG
s panPan2.chrUn_NW_014024225v1     80383 5 +    105888 TTGGG--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          111507 7 +    417917 GCGGGGG
i gorGor5.CYUI01015925v1       C 0 I 158
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                 155393288 1 - 155549662 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-426.000000
s hg38.chrX_KI270880v1_alt         42297 41 +    284869 TAGGGGAGGGCGGGGCGGCGCCCTGGCGGGGAAGCACCGCG
s panPan2.chrUn_NW_014024225v1     80388 12 +    105888 ----------TGGGGGGGCGCC-------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e panTro5.chrX                 155393288  1 - 155549662 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832  0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111514 158 +    417917 I

a score=75.000000
s hg38.chrX_KI270880v1_alt         42338 3 +    284869 GCC
s panTro5.chrX                 155393289 3 - 155549662 GGC
i panTro5.chrX                 I 1 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832 0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          111514 158 +    417917 I
e panPan2.chrUn_NW_014024225v1     80400 0 +    105888 C

a score=2377.000000
s hg38.chrX_KI270880v1_alt         42341 12 +    284869 GGGGAGGGGCAT
s panTro5.chrX                 155393292 12 - 155549662 GGGGGGGGGCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          111672 12 +    417917 GGGGGGaggcac
i gorGor5.CYUI01015925v1       I 158 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e rheMac8.chrX                    100832  0 + 149150640 C
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     80400  0 +    105888 C

a score=732695.000000
s hg38.chrX_KI270880v1_alt         42353 918 +    284869 CGTGGCGGGGAAGCACTGAGGGGAATACATGGGTCCCATGCAGGAACCTCACTGGGCTGCGCGAGCGGCTTTGTAGGACCCGAAGCGGACGCAGCGCGTGAGCTGCAAAAGAGGTGTCTGACCCAGCCCGAGGCGCGCagagaccctgtgggtggggccgggcgcactccgcgagggtgagttctccacacaacggaggctgtactgaaaaggatgaaggtgtcccagcagacggaatgccagcaaagagacctcccagtgaaggaactctcagagataccccacaacttcaagagcaccaaggataaaacgc-ggaagctgagcaaggcgtgttaagtcgagtgagtctgccagggcacggagcaggtgctcactccacacgggacaaggagatggcactgctgtaactacttt--tggcaagtttttactgagagatgaaacaattcttaatgcttctggtgttttaagttacagcatactaggtaaatattagttcttttcattcactacatgtttgcaaccgactgtaagaaagtttctaatatttcaacaaaaatgattatagAATGATCCTAATTTTTACTGGAAGATGGTTTTGCATGGTTGTGACTTATCTGGTCCTTTCATGGCCCCACACTGCCGTACAAGACAGGGACACCTCTACAAATACGGAGTGACTTAGCaaaaacaaatatgcaagtgtacaacagcatgctaatttttctctaagaaa-tgcaagaagtatgtatgttcatactcatacacatatttgtacataattgctcatattaaaagctaaaataacaataagaggataaaccaaagctatggaaactattacctctggggtagaaacagcacagacagggacagaacctggacttacctgaatgtgtctagtttgttagtgctcacttt
s panTro5.chrX                 155393304 917 - 155549662 CGTGGCGGGGAAGCACTGAGGGGAATACATGGGTCCCGTgcaggaacctcactgcgttgcgcgagcggctttgtaggacccgaagcggacgcagcacgtgagctgcaaaagaggtgactgacccaccgggaggctcgcagagaccctgtgggtggggccgggcgcactccgcgggggtgagttctccacacaacggaggctgtactgaaaaggatgaaggtgtcccagcagacggaatgccagcaaagagacctcccagtgaaggaactctcagagatgccccacaacttcaagagcaccaagcataaaacac-ggaagctgagcaaggcgtgtaaagtcgagagagtctgccagggcacggagcaggtgctcgctccacacgggacaaggagatggcactgctgtaactacttt--tggcaagtttttactgagagataaaacaattcttaatgtttctggtgttttaaatgacagcatactaggtaaatattagttcttttcattcactacatgtttgcaaccgactgtaagaaagtttctaatatttcaacaaaaatgattatagaatgatcctaatttttactggaagatggttttgcatggttgtcacttatctggtcctttcatggccccacactgccgtacaagacagggacACCTCTACAAATACCGAGTGACTTAGCAAAAACAAATATCCAagtgtacaacagcatgctaatttttctctaagaac-tgcaagaagtatgtatgttcatcctcatacacatatttgtacgtaattgctcatattaaaagctaaaataacaataagaggataaaccaaagctatggaaactattacctccagg-tagaaacagcacagacagggacagaacctggacttacctgaatgtgtctggtttgttagtgttcacttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     80400 916 +    105888 -GTGGCGGGGAAGCACTGAGGGGAATACATGGATCCCATGCAGGAACCTCACTGCGTTGCGCGAGCGGCTTTGTAGGACCCGAAGCGGACGCAGCACGTGAGCTGCAAAAGAGGTGACTGACCCAGCGGGAGGCTCGCAGAGACCCTGTGGGTGGGGCCGGGCGCACTCCGCGGGGGTGAGTTCTCCACACGACGGAggctgtactgaaaaggatgaaggtgtcccagcagacggaatgccagcaaagagacctcccagtgaaggaactctcagagatgccccacaacttcaagagcaccaagcataaaacac-ggaagctgagcaaggcgtgtaaagtcgagagagtctgccagggcacggagcaggtgctcgctccacacgggacaaggagatggcactgctgtaactacttt--tggcaagtttttactgagagataaaacaattcttaatgtttctggtgttttaaatgacagcatactaggtaaatattagttcttttcattcactacatgtttgcaaccgactgtaagaaagtttctaatatttcaacaaaaatgattatagaatgatcctaatttttACTGGAAGATGGTTTTGCATGGTTGTCACTTATCTGGTCCTTTCATGGCCCCACACTGCCGTACAAGACAGGGACACCTCTACAAATACCGAGTGACTTAGCaaaaacaaatatgcaagtgtacaacagcatgctaatttttctctaagaac-tgcaagaagtatgtatgttcatactcatacacatatttgtacgtaattgctcatattaaaagctaaaataacaataagaggataaaccaaagctatggaaactattacctccagg-tagaaacagcacagacagggacagaacctggacttacctgaatgtgtctggtttgttagtgttcacttt
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          111684 918 +    417917 cgtggcggggaagcactgaggggaatgcatgggtcccatgcaggaacctcactaggctgcgcgagcggctttgtaggacccgaagcggacgcagcacgtgagctgcaaaagaggtgactgacccagcccgaggcacgcagagaccctgtgggtggggccgggcgcactcggcgagggtgagttctccacacaacgaaggctgtactgaaaaggatgacggtgtcccagcagacggaatgccagcaaagagacctcccagtgaaggaactctcagagataccccacaacttcaagagcaccaaggataaaacgc-ggaagctgagcaaggcgtgttcagtctagagagtctgccagggcacggagcaggtgctcactccacacgggacaaggagatggcactgctgtaactacttt--tggcaagtttttactgagagataaaacaattcttaatgtttctggtgttttaaattacagtatactaggtaaatattagttcttttcattcactacatgtttgcaaccgactgtaagaaagtttctaatatttcaacaaaaatgattatagaatgatcctaatttttactggaagatggttttgcatggttgtgacttatctggtcctttcatggccccacactgctgtacaagacagggacACCTCTACAAATACGGAGTGACTTAGCaaaaacaaatatgcaagtgtacaacatcatgctaatttttctctaagaaa-tgcaagaagtatgtatgttcatactcatacacatatttgtacgtaattgctcatattaaaagctaaaataacaataagaggataaaccaaagctatggaaactattacctccggggtagaaacagcacagacagggacagaacctggacttatctgaatgtgtctggtttgttagtgttcacttt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    100832 906 + 149150640 CGTGGCGGGGAAGCCCCGAGGGGAACGTGTGGGTCACGTGCAGGAACCTCACCGCGCTGCGTGAGTGGCTTGGTAGGACCCGAAGGGGACACAGCACGCGAGCCGCAGAAGAGGCGACCGACCCGGCCGGCAGCGTGC----ACCCTGCGTGTGGGGCTGGGCAGactcggcgagggcgagttctcgacataaccgaggctgtgctgaaaaggatgaagccgtcccag--------gtgcaagcaaagagacctccccgtgaaggaactctcagcgacatcccacagcctcaagagcacggaggataacacactggaagccgagacacacgtggagagtcgagcgagcctgccagggcgggcggtgggtgcccactccacaccggacatggagacggcacggctgtcactacttctgtggcacgtttctaccgagacatgaaacaattcttaacgtgtgtggtgttttaaattacagcatgctaggtaaatattagctgttttcattcactccacgtttgcaaccaactgtaagaaagtttctaatatttcaacaaaagcaactacagaatgaccctaattttccttgtaagatggctttgcatgcttgcagcttatctggtccttacacggccccacactgccgtgcaagacgaCGCCACCTCTACAGATACG----GACTTACTAAGAACAAATACCCAAGTGTAAAacagcatgctaatttttctctcagaaagtgcaggatgtatgcatgttcatcctcatacacacgttcgcgtgtacttgctcatattaaaagctaaaacgacaataagagggtaaactaaagctacgggaactcttacctcggggggagaaacagcgcagacagggacggaacctggacttacctaactgtgtctggtttgttagcgttcacttt
i rheMac8.chrX                 C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e macNem1.NW_012017243v1          148512 1198 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=50996.000000
s hg38.chrX_KI270880v1_alt         43271 42 +    284869 gtaaccatggaggtttttacatatttataaaacaaaactttt
s panTro5.chrX                 155394221 42 - 155549662 gtaaccatggaggtttttacatatttataaaacaaaactttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     81316 42 +    105888 gtaaccatggaggtttttacatatttataaaacaaaactttt
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          112602 42 +    417917 gtaaccatggaggattttacatatttataaaacaaaactttt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    101738 42 + 149150640 ggaaccacagaggtttttacgtatttataaaacaagactttg
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          149710 42 +  25972781 GTAACCACAGAGGTTTTTACGTATTTATAAAACAAGACTTTG
i macNem1.NW_012017243v1       I 1198 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426  0 -   1025902 C
e colAng1.NW_012115411v1          176327 1458 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=510551.000000
s hg38.chrX_KI270880v1_alt         43313 309 +    284869 taaaatactttaaaaacacaatccctaatagaaaaagggcggggacactt---aatgtgttctttcagacccgtattgccct-aaaaccaaaaccagacaaaggactcacaagaaaactaccaagcactgtcttctctgtgaatccagttgc-aaaattattggaatccagcaacatataaaaaagatgagacacagcgaccatgcggaatttatcccaggaatgcaaggttggtttaacatcccaaaaccaactcatttaatagactgtattaataagttaaaaaaacaaaaccCggccaggtgcagtggctc
s panTro5.chrX                 155394263 312 - 155549662 taaaatactttaaaaacacaatccctaatagaaaaagggcggggacacttcttaatgtgttctttcagacccgtattgccct-aaaaccaaaaccagacaaaggactcacaaaaaaactaccaaacactgtcttctctgtgaatccagttgc-aaaattattggaatccagcaacatataaaaaagatgagacacagcgaccatgaggaatttatgccaggaatggaaggttggtttaacatccccaaaccaactcatttaatagactgtattaataagttaaaaaaacaaaaaccggccaggtgcagtggctc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     81358 312 +    105888 aaaaatactttaaaaacacaatccctaatagaaaaagggcggggacacttcttaatgtgttctttcagacccgtattgccct-aaaaccaaaaccagacaaaggactcacaaaaaaactaccaaacactgtcttctctgtgaatccagttgc-aaaattattggaatccagcaacatataaaaaagatgagacacagcgaccatgaggaatttatgccaggaatggaaggttggtttaacatccccaaaccaactcatttaatagactgtattaataagttaaaaaaacaaaaaccggccaggtgcagtggctc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          112644 312 +    417917 taaaatactttaaaaacacaatctctaatagaaaaagggcggggacacttcttaatgtgttctttcagacccgtattgccctaaaaaccaaaaccagacaaaggactcacaaaaaaactaccaagcactgtcttctctgtgaatccagttgc-aaaattattggaatccagcaacatataaaaaagatgagacacagcgaccatgcggaatttat-ccaggaatgcaaggttggtttaacatcccaaaaccaactcatttaatagactgtattaataagttaaaaaaacaaaaacTggccaggtgcagtggctc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    101780 311 + 149150640 taaaatactttaaaaggacagtctctaatagagaaagg--ggggacacttcccaacgtgttctttcagactcgtatttctct-aaaaccaaaaccagacaaaggactcacaagaaaactctcaggcagtgtgttctctgtgaatccagttgcaaaaattactggaatccagcaacatatgaaagacacgagacacaccggccacatggaatttatgctaggaatgcaaggttggtttaacatccccaaacccactcatttaatagactgtattcatagGTtaaaaatacaaaaaccggccgggcgcggtggctc
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          149752 309 +  25972781 TAAAATACGTTAAAAGGACAGTCTCTaatagagaaagg--ggggacacttcccaatgtgttctttcagacccgtatttctct-aaaaccaaaaccagacaaaggactcacaagtaaa-tctca-acagtgtgttctctgtgaatccagttgcaaaaattactggaatccagcaacatatgaaagacacgagacacaccgaccacatggaatttatgctaggaatgcaaggttggtttaacatccccaaacccactcatttaacagactgtattcatagGTtaaaaatacaaaaaccggccgggcgcggtggctc
i macNem1.NW_012017243v1       C 0 I 37
s colAng1.NW_012115411v1          177785 311 +   1230721 TAAAATACTTTAAAAAGACAATCCCTaataggaaaagg--ggggacacttcccaacatgttctttcagactcgtatttctct-aaaaccaaaaccagacaaaggactcacaagaaaactgccaagcagtgttttctctgtgaatccagttgcaaaaattattggaatccagcaacacatgaaaaagacgagacacaccgaccacgtggaatttacgccaggaacgcaagcttggtttaacatcccaaaaccaactcatttaatagactgtattcataggttaaaaaaacaaaaaccggccaggcgcggtggccc
i colAng1.NW_012115411v1       I 1458 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=7919.000000
s hg38.chrX_KI270880v1_alt         43622 9 +    284869 atgcctgta
s panTro5.chrX                 155394575 9 - 155549662 acgcctgta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     81670 9 +    105888 acgcctgta
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          112956 9 +    417917 acgtctgta
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    102091 9 + 149150640 acacctcaa
i rheMac8.chrX                 C 0 I 28
s colAng1.NW_012115411v1          178096 9 +   1230721 acacctgca
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692 19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426 0 -   1025902 C
e macNem1.NW_012017243v1          150061 37 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=634803.000000
s hg38.chrX_KI270880v1_alt         43631 427 +    284869 atcccagcactttgggaggccgaggcaggcggatcacttgaagtcaggagttcaag-accagcctggccaatatggtgaaaccccatgtctactaaaaatataaaaattagccaggcatggtggt--gcatgcctatagtcccagctacttgggaggctgaggcaggagaatcacttgaacccagaaggt-ggaggttgcagtgagccgagattacaccactgcactccagcctgggtgacagagcaagactttgtct-----caaacaagcaaacccaaaaaacaaaaaCCTGCTCA--CTCCCGAGGACCCCCTT-CACAGCTGCAGAGCTGGAGAGGGCTGGGGGGCAGGGGTCTCACCGTGAGGGGCTCACATGTACCGTGCACCGAGGCTCTGGGGCTCTGACTTGGAGGGGTGGGAGCATCCACTGG-CCAGCG
s panTro5.chrX                 155394584 420 - 155549662 atcccagcactttgggaggccgaggcaggcggattacttgaagtcaggagttcaag-accagcctggccaatatggtgaaaccccatctctactaaaaatataaaaattagccaggcatggtggt--gcatgcctatagtcccagctacttgggaggctgcggcaggagaatcacttgaacccagaaggt-ggaggttgcagtgagccgagattacaccactgcactccagcctgggcgacagagcaagactttgtct-----caaacaagcaaacccaaaaaacaaaaaCCTGCTCA--CTCCCGAGGACCCCCTT-CACAGCTGCA-------AGAGTGCTGGGGGGCAGGGGTCTCACCCTGAGGGGCTCACATGTACCGTGCACCGAGGCTCTGGGGCTCTGACCTGGAGGAGTGGGAGCATCCGCTGG-CCAGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     81679 420 +    105888 atcccagcactttgggaggccgaggcaggcggattacttgaagtcaggagttcaag-accagcctggccaatatggtgaaaccccatctctactaaaaatatacaaattagccaggcatggtggt--gcatgcctatagtcccagctacttgggaggctgcggcaggagaatcacttgaacccagaaggt-ggaggttgcagtgagccgagattacaccactgcactccagcctgggcgacagagcaagactttgtct-----caaacaagcaaacccaaaaaacaaaaaCCTGCTCA--CTCCCGAGGACCCCCTT-CACAGCTGCA-------AGAGTGCTGGGGGGCAGGGGTCTCACCCTGAGGGGCTCACATGTACTGTGCACCGAGGCTCTGGGGCTCTGACCTGGAGGAGTGGGAGCATCCGCTGG-CCAGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          112965 432 +    417917 atcccagcactttgggaggccgaggcaggcagatcacttgaagtcaggagttcaag-accagcctggccaatatggtgaaaccccatctctactaaaaatataaaaattagccaggcatggtggt--gcatacctatagtcccagctacttgggaggctgcggcaggagaatcacttgaacccagaaggt-ggaggttgcagtgagccgagattacaccactgcactccagcctgggcgacagagcaagactttgtctcaaaacaaacaagcaaacccaaaaaacaaaaaCCTGCTCA--CTCCCGAGGACCCCCTT-CACAGCTGCAGAGCTGGAGAGGGCTGAGGGGCAGGGGCCTCACCCTGAGAGGCTCACATGTACCGTGCACCGAGGCTCTGGGGCTCTGATCTGGAGGGGTGGGAGCATCCGCTGG-CCAGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    102128 432 + 149150640 atcccagcactttgggaggctgaggcaggtggatcacttgaagtcaggagttcctgaatcagcctggccaatatggtgaaactccatctctactaaaaatat-aaaattagccaggcatggtggt--acacacctgtagtcccagctacttgggaggccaaggcaggagaatcgcttgaacctggaaggtgggaggttgcagtgagccaaga-ggcaccattgcactccagcctgggcaacagagcaagattctgcctcaaaacaaacaagcaaacagaaaaaacaaaaA-CTGCCCACTCTCCTGAGGACCGCCTTCCACAGCTGCAGAGCTGGAGAGGGCTGGGGAGCAGGGGTCTCGCCCGGA-GGGCTCACGAGTACCGTGCACTAAGGCTCTG-GGCTCTGACCT-GAGGGGTGGGAGCATCTGCCTTCCCGGCG
i rheMac8.chrX                 I 28 C 0
s macNem1.NW_012017243v1          150098 432 +  25972781 atcccagcactttgggaggccgaggcaggtggatcacttgaagtcgggagttcctgaatcagcctggccaatatggtgaaactccatctctactaaaaatgtaaaaattagccaggcatggtggt--acacacctgtagtcccagctacttgggaggccaaggcaggagaatcgcttgaacccggaaggt-ggaggttgcagtgagccgagagggcaccattgcactccagcctgggcaacagagcaagattctgcctcaaaacaaacaagcaaactgaaaaaacaaaaaCCTGCCCA--CTCCTGAGGACCGCCTT-CACAGCTGCAGAGCTGGAGAGGGCTGGGGAGCAGGGGTCTCGCCCCGAGGGGCTCACGAGTACCGTGCACTAAGGCTCTG-GGCTCTGACCTGGAGGGGTGGGAGCATCTGCCTT-CCGGCG
i macNem1.NW_012017243v1       I 37 C 0
s colAng1.NW_012115411v1          178105 349 +   1230721 gtcccagcactttgcgaggccgaggcaggtggatcacttgaagtcaggagttcacgaaccagcctggccaatatggtgaaacctcatctctactaaaaatataaaaattagccgggcgtggtggcgggcacagctgtaatcccagctacgtggcaggctgaggcaggagaatcgctggaacccggaaggt-ggaggttg-------------------------------------------------------------------------------------caAAAACCTGCCCA--GTCCTGAGGACCCCGTT-CACAGCTGCGGAGCTGGAGAGGGCCGCGGAGCAGGGGTCTCGCCCCGAGGGGCTCACGTGTACGGTGCCCTAAGGCTCTGCGGCTGTGACCT-GGAGGGTGGGAGCGTCTGCCGC-CCGGCG
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e cerAty1.NW_012001098v1          108426   0 -   1025902 C
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=772478.000000
s hg38.chrX_KI270880v1_alt         44058 440 +    284869 ACTCCACCTGGAGGGTAGGAGGCTGGAGATGCGGGCACAGGTCCCTGGAAACACAACCACCCACCAGGGGTCCAGACA-CGCATCTCTGGTGTAGGCCTTGCCTTGGTAACGGACAGACACTAAACTGAGTGTGCTCCATCTGTGGGCGTCCAGGCGGTCAGCCTGGAGAGCATGCAGCTGAGAAGGAAAGCAGGCGGCGAATGATGCACGCCGCGCCGCAGCACTCAGGGTGAGTCTAGAAATGGGCCCATGGGGCTGCTGCCAGGAGAC--GGGTCCACAGCTGCCCAGCCTGGGATGGCCGCTCCTCGGGCAGAAAGGGGCAAGGCCAGGAGGGTGCAGAACGGCCTCCGAGAGCCACGAGAGCTGGCGCCACTGGCCCCGGAGGGGAGAGAAGGGGAGGGTGGCACAGGGCGGGCCTGCGCTCTTCACAGCATCAGGAT
s panTro5.chrX                 155395004 440 - 155549662 ACTCCACCTGGAGGGCAGGAGGCTGGAGATGCAGGCACAGGTCCCTGGAAACACAACCGCCCACCAGGGGTCCAGACA-CGCATCT--GGTGTAGGCCTTGCCTTGGTAACGCACAGACACTAAACTGAGCGTGCTCCATCTGCGGGCGTTCACGCGGTCAGCCTGGAAAGCATGCAGCTGAGAAGGAAAGCAGGCGGCGAATGATGCACGCCGCGCTGCAGCACTCAGGGTGAGTCTAGAAATGGGCCCATGGGGCTGCTGCCGGGAGACAGGGGTCCACAGCTGCCCAGCCTGGGATGGCCGCTCCTCGGGCAGAAAGGGGCAAGGCCAGGAGGGTGCAGAACGGCCTCCGAGAGCCACGAGAGCTGGCGCCACTGGCCCCAGAGGGGAGAGAAGGGGAGGGTGGCACAGGGCGGGTCTGCGCTCTTCACAGCCTCAGGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82099 440 +    105888 ACTCCACCTGGAGGGCAGGAGGCTGGAGATGCAGGCACAGGTCCCTGGAAACACAACCGCCCACCAGGGGTCCAGACA-CGCATCT--GGTGTAGGCCTTGCCTTGGTAACGCACAGACACTAAACTGAGCGTGCTCCATCTGCGGGCGTTCACGCGGTCAGCCTGGAAAGCATGCAGCTGAGAAGGAAAGCAGGCGGCGAATGATGCACGCCGCGCTGCAGCACTCAGGGTGGGTCTAGAAATGGGCCCATGGGGCTGCTGCCGGGAGACAGGGGTCCACAGCTGCCCAGCCTGGGATGGCCGCTCCTCGGGCAGAAAGGGGCAAGGCCAGGAGGGTGCAGAACGGCCTCCGAGAGCCACGAGAGCTGGCGCCACTGGCCCCAGAGGGGAGAGAAGGGGAGGGTGGCACAGGGCGGGCCTGCGCTCTTCACAGCCTCAGGAT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113397 442 +    417917 ACTCCACCTGGAGGGTAGGAGGCTGGAAATGCGGGCACACGTCCCTGGAAACACAACCGCCCACCAGGGGTCCAGACA-CGCATCTCTGGTGTAGGCCTTGCCTTGGTAACGCACAGACACTAAGCTGAGTGTGCTCCATCTGCGGGCGTGCACGCGGTCAGCCTGGAGAGCAAGCAGCTGAGAAGGAAAGCAGGCAGCGAATGATGCATGCAGCGCCGCCGCACTCAGGGTGAGTCTAGAAATGGGCCCATGGGGCTGCTGCCGGGAGACAGGGGTCCACAGCGGCCCAGCCTGGGATGGCCGCTCCTCGGGCAGAAAGGGGCAAGGCCAGGAGGGTGCAGAACGGCCTCCGAGAGCCACCAGAGCTGGCGCCACTGGCCCCGGAGGGGAGAGAAGGGGAGGGTGGCACAGGGTGGGCCTGGGCTCTTCACAGCCTCAGGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    102560 355 + 149150640 ACTCCACCTGGAGGACGGGACGCTGGAGAGGTGGGCCCGGGTCCCTGGAAACACAATCGCCCACCAGGGGTCCAGACA-CACGTCCCTGGAGTGAGCCTTGCCTTGGTAACGCATAGACACTAAACCGAGCGTGCCCGATCTGCGGACGTCCACGCAGGCAGCCTGGAAAGCAGGCAGCTGAGAAGGAAAGCAGGTGGCAAATGACGAACATGGCGCCGCAGCACTCAGGGTGAGTCCAGAAATGGGTCCTCAGGGCCACTGCCGGGGGACAGGGGTCCACAGCCGCCCAGCTTGGGACGGCGGCTCCTCGGGCAGAAAGGGGCACGGCCAGGAGGGTGCTGAACGGCC---------------------------------------------------------------------------------------TCAGGAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          150530 355 +  25972781 ACTCCACCTGGAGGACGGGACGCTGGAGAGGTGGGCCCGGGTCCCTGGAAACACAATCGCCCACCAGGGGTCCAGACA-CACGTCCCTGGAGTGAGCCTTGCCTTGGTAACGCACAGACACTAAACCGAGCGTGCCCGATCTGCGGACGTCcacgcaggcagcctggaaagcaggcagctgagaaagaaagcaggcggcagATGACGAACATGGCGCCGCGGCACTCAGGGTGAGTCCAGAAATGGGCCCTCGGGGCCACTGCCGGGGGACAGGGGTCCACAGCCGCCCAGCCTGGGACGGCGGCTCCTCGGGCAGAAAGGGGCACGGCCAGGAGGGTGCTGAACGGCC---------------------------------------------------------------------------------------TCAGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108426 333 -   1025902 acTCCACCTGGAGGACAGGACGTTG--GAGGTGGGCACGGATCCCTGGAAACACAATCGCTCACCAGGGGTCCAGATA-CGCGTCCCTGGAGTGAGCCTTGCCTTGGTAACGCACAGACACTAAACGGAGCGTGCTCGATCTGCGGACGTCCACGCGGGCAGCCTGGAAAGCAGGC--------------------GGCAAATGACGAACGTGGCGCCGGAGCACTCAGGGTGAGTCCAGAAATGGGTCCTCGGGGCCACTGCCGGGGCACAGGGGTCCACGGCCGCCCAGCCTGGGACGGCGGCTCCTCGGGCAGAAAGGGGCACGGCCAGGAGGGTGCTGAACGGCC---------------------------------------------------------------------------------------TCAGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          178454 356 +   1230721 ACTCCACCTGGAGGACAGGACGCTGGAGAGGCGGGCACGGGTCCCTGGAAACAGAACCGCCCACCCGGGGTCCAGACACCGCGTCCCTGGCGTGAGCCTTGCCTTGGTAACGCTCAGACACTAAACTGAGTGTGCTCGATCTGCGGACGTCCGCGCAGTCAGCCTGGAAAGGATGCAGCTGAGAAGGAAAGCAGGCGGCAAATGACGAACATGGCGCCGCAGCTCTCAGGGTGAGTCTAGAAATGGGTCCACGGGGCCACTGCCGGGGGACAGGGGTCCACAGCCGCCCAGCCTGGGACGGTGGATCCTCGGGCGGAAAGGGGCACGGCCAGGAGGGTGCTGAACAGCC---------------------------------------------------------------------------------------TCAGGAC
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           10692  19 -    350446 I
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=366226.000000
s hg38.chrX_KI270880v1_alt         44498 118 +    284869 GAGAATGCAGACGGAATTCCCACTCGCATTTCAGATGCTTAAGAATTCACACAGCAGCAACCAGACAGCAAACCTCAGACCACAACTATAACCTCAGAGAAAACCTGGGCCGCTCCCG
s panTro5.chrX                 155395444 118 - 155549662 GAGAATGCAGACGGAATTCCCACTCGGGTTTCAGATGCTTAAGAATTCACACAGCAGCAACCAGACAGCAAACCTCAGACCACAACTATAACCTCAGAGAAAACCTGGGCCGCTCCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82539 118 +    105888 GAGAATGCAGACGGAATTCCCACTCGGGTTTCAGATGCTTAAGAATTCACACAGCAGCAACCAGACAGCAAACCTCAGACCACAACTATAACCTCAGAGAAAACCTGGGCCGCTCCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113839 118 +    417917 GAGAATGCAGACGGAATTCCCACTTGGGTTTCAGATGCTTAAGAATTCACACAGCAGCAACCAGACAGCAAACCTCAGACCACAACTATAACCTCACAGGAAACCTGGGCCGCTCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    102915 118 + 149150640 GAGAATGCAGATGGAATTCCCACTTGAGTTTCAGATGCTTAAGAATTCACACAGCAGCGACCAGACAGCAAACCTCAGGCCACAACTGTAACCTCAGAGGAAACCTGGGCCACTCCCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          150885 118 +  25972781 GAGAATGCAGACGGAATTCCCACTTGAGTTTCAGATGCTTAAGAATTCACACAGCAGCGACCAGACAGCAAACCTCAGGCCACAACTGTAACCTCAGAGGAAACCTGGGCCACTCCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108759 118 -   1025902 GAGAACGCAGACGGAATTCCCACTTGCGTTTCAGATGCTTAAGATTTCACACAGCAGCGACCAGACAGCAAACCTCGGGCCACAACTGTAACCTCAGAGGAAACCTGGGCCACTCCCG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           10711 118 -    350446 GAGAATGCAGACGGAGTTCCCACTTGAGTTTCAGGTGCTTAAGAATTCACACAGCAGCAATCAGACAGCAAACCTCGGGCCACAACTGTAACCTCAGAGGAAACCTGGGCCACTCGCG
i manLeu1.NW_012108508v1       I 19 C 0
s colAng1.NW_012115411v1          178810 118 +   1230721 GAGAACCCAGACGGAATTCCCACTTGCATTTCAGATGCTTAGGAGTTCACACAGCAGCAACCAGACAGCAAAGCTCGGGCCACAACTATAACCTCAGAGGAAACCTGGGCCGCTCCCG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e nomLeu3.chrX                     30320 198 + 141252148 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e chlSab2.chrUn_KE147541v1         96325 280 -    811265 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=15271.000000
s hg38.chrX_KI270880v1_alt         44616 4 +    284869 CACA
s panTro5.chrX                 155395562 4 - 155549662 CACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82657 4 +    105888 CACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113957 4 +    417917 CACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30518 4 + 141252148 CACT
i nomLeu3.chrX                 I 198 C 0
s rheMac8.chrX                    103033 4 + 149150640 CACA
i rheMac8.chrX                 C 0 I 231
s macNem1.NW_012017243v1          151003 4 +  25972781 CACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108877 4 -   1025902 CACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96605 4 -    811265 CACG
i chlSab2.chrUn_KE147541v1     I 280 C 0
s manLeu1.NW_012108508v1           10829 2 -    350446 --CA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          178928 4 +   1230721 CACA
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=63609.000000
s hg38.chrX_KI270880v1_alt         44620 17 +    284869 CGTGTGAAACGCACCCT
s panTro5.chrX                 155395566 17 - 155549662 CGTGTGACACGCACCCT
i panTro5.chrX                 C 0 T 35763
s panPan2.chrUn_NW_014024225v1     82661 17 +    105888 CGTGTGACACGCACCCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113961 17 +    417917 CGTGTGAAACGCACCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30522 17 + 141252148 CATGTGATGTGCACCCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103268 17 + 149150640 CGTGTGACACGCACCTG
i rheMac8.chrX                 I 231 C 0
s macNem1.NW_012017243v1          151007 15 +  25972781 --CGTGACACGCACCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108881 15 -   1025902 --CGTGACACGCACCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96609 17 -    811265 CGTGTGACATGCACCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10831 17 -    350446 CACGTGACACGCACCCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          178932 17 +   1230721 CGTGTGACACGCACCTG
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=30127.000000
s hg38.chrX_KI270880v1_alt         44637 11 +    284869 CCTCGGCCGTG
s panTro5.chrX                    167765 11 + 155549662 CCTCGGCCGCT
i panTro5.chrX                 I 25805 C 0
s panPan2.chrUn_NW_014024225v1     82678 11 +    105888 CCTCGGCCACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113978 11 +    417917 CCTCAGCCGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30539 11 + 141252148 GCTCGGCCGCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103285 11 + 149150640 CCCCGGCCGCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151022 10 +  25972781 CCTCGGCCG-C
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108896 10 -   1025902 CCTCGGCCG-C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96626 11 -    811265 CCTCGGCCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10848 10 -    350446 CCTCGGCCG-T
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          178949 11 +   1230721 CCTCGGCCACT
i colAng1.NW_012115411v1       C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e saiBol1.JH378345                122053 4800 +    465904 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1030.000000
s hg38.chrX_KI270880v1_alt         44648 2 +    284869 CC
s panTro5.chrX                    167776 2 + 155549662 CC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82689 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          113989 2 +    417917 CC
i gorGor5.CYUI01015925v1       C 0 I 132
s nomLeu3.chrX                     30550 2 + 141252148 CG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103296 2 + 149150640 CC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151032 2 +  25972781 TG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          108906 2 -   1025902 TG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96637 2 -    811265 CC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10858 2 -    350446 TG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          178960 2 +   1230721 CG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126853 2 +    465904 CC
i saiBol1.JH378345             I 4800 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=84499.000000
s hg38.chrX_KI270880v1_alt         44650  31 +    284869 GCCTCACT----CACG------------------------------------------------------------------------------------CTCGTGTGACACGCACCCA
s panTro5.chrX                    167778  31 + 155549662 ACCTCACT----CACG------------------------------------------------------------------------------------CTTGTGTGACACGCACCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82691 115 +    105888 GCCTCACT----CACGCTCGTGTGACACCCACCTGCCTCGGCCGCTCTGCCTCACGCTCGTGTGACACGCACTCACCTCGGCCACTCGGCCTCATTCACACTCGTGTGACACGCACCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114123  31 +    417917 GCCTCATT----CACG------------------------------------------------------------------------------------CTCGTGTGACACGCACCCG
i gorGor5.CYUI01015925v1       I 132 C 0
s nomLeu3.chrX                     30552  31 + 141252148 GCCTCATT----CACG------------------------------------------------------------------------------------CTCGTGGGACATGCACCTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103298  31 + 149150640 ACCTCACT----CTCA------------------------------------------------------------------------------------GGCGTGTGACATGCACCTG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151034  31 +  25972781 GCCTCACT----CATG------------------------------------------------------------------------------------CCCGTGTGACACACACCCA
i macNem1.NW_012017243v1       C 0 I 336
s cerAty1.NW_012001098v1          108908  31 -   1025902 GCCTCACT----CATG------------------------------------------------------------------------------------CCCGTGTGACATGCACCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96639  31 -    811265 ACCTCACT----CTCA------------------------------------------------------------------------------------CGTGTGTGACATGCGCCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10860  31 -    350446 GCCTCACT----CATG------------------------------------------------------------------------------------CCCATGTGACACACACCCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          178962  31 +   1230721 GCCTCATT----CACG------------------------------------------------------------------------------------TTCGTGTGACACGTACCCA
i colAng1.NW_012115411v1       C 0 I 93
s saiBol1.JH378345                126855  28 +    465904 ACCTCGCCCTCACACG------------------------------------------------------------------------------------CCCATG------GCACCA-
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=5599.000000
s hg38.chrX_KI270880v1_alt         44681 2 +    284869 CC-
s panTro5.chrX                    167809 2 + 155549662 CC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82806 2 +    105888 CT-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114154 2 +    417917 CC-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30583 2 + 141252148 CC-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103329 2 + 149150640 CC-
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151401 2 +  25972781 CC-
i macNem1.NW_012017243v1       I 336 C 0
s cerAty1.NW_012001098v1          108939 2 -   1025902 CC-
i cerAty1.NW_012001098v1       C 0 I 1311
s chlSab2.chrUn_KE147541v1         96670 2 -    811265 CC-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10891 2 -    350446 CC-
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          179086 2 +   1230721 CC-
i colAng1.NW_012115411v1       I 93 C 0
s saiBol1.JH378345                126883 2 +    465904 -CG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=11940.000000
s hg38.chrX_KI270880v1_alt         44683 3 +    284869 ACG
s panTro5.chrX                    167811 3 + 155549662 TCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82808 3 +    105888 TCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114156 3 +    417917 TCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30585 3 + 141252148 TCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103331 3 + 149150640 CCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151403 3 +  25972781 CCG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96672 3 -    811265 TCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10893 3 -    350446 TCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          179088 3 +   1230721 TCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126885 3 +    465904 TCG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          188915 7073 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=38413.000000
s hg38.chrX_KI270880v1_alt         44686 8 +    284869 GCCGCTCC
s panTro5.chrX                    167814 8 + 155549662 GCCGCTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82811 8 +    105888 GCCGCTCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114159 8 +    417917 GCCGCGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30588 8 + 141252148 GCCGCTCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103334 8 + 149150640 GCCGCCCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151406 8 +  25972781 GCCGCCCC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96675 8 -    811265 GCCGCTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           10896 8 -    350446 GCCGCTCC
i manLeu1.NW_012108508v1       C 0 M 3499
s colAng1.NW_012115411v1          179091 8 +   1230721 GCCGCTCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126888 8 +    465904 CCCTCTCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          195988 8 -    735872 GCCGCTCC
i cebCap1.NW_016107987v1       I 7073 C 0
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=177461.000000
s hg38.chrX_KI270880v1_alt         44694 43 +    284869 GCCTCACCCTCACATGCCCGCAGTACCACCTCGGCTGCTCCAC
s panTro5.chrX                    167822 43 + 155549662 GCCTCACCCTCACATGCCCGCAGTACCACCTCGGCTGCTTCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82819 43 +    105888 GCCTCACCCTCACATGCCCGCGGTACCACCTCAGCTGCTCCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114167 43 +    417917 GCCTCACCCTCACATGCCCGCAGTACCACCTCGGCTGCTCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30596 43 + 141252148 GCCTCACCGTCACATGCCCGCAGTACCACCTCGGCTGCTCCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103342 43 + 149150640 GCCTCACCCTCTCACGCCCGCAGTACCACCTCGGCTGCTCCAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151414 43 +  25972781 GCCTCACCCTCTCACGCCCGCAGTACCACCTCGGCTGCTCCAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96683 43 -    811265 GCCTCACCCTCTCACGCCGGCAGGACCACCTCAGCTGCTCCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179099 43 +   1230721 GCCTCACCCTCTCGTGCCCGCAGTGCCCCCCCGGCGGCTCCAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126896 43 +    465904 ACCTCGCCCTCACACGCTCACGGCACCACCACGGCCTCTCCGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          195996 43 -    735872 ACGTCACCCTCACACACCCACAGCACCACGTCGGCCGCTCCAC
i cebCap1.NW_016107987v1       C 0 I 50
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=11916.000000
s hg38.chrX_KI270880v1_alt         44737 3 +    284869 GTC
s panTro5.chrX                    167865 3 + 155549662 GTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82862 3 +    105888 GTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114210 3 +    417917 GTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30639 3 + 141252148 GTC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103385 3 + 149150640 GTC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151457 3 +  25972781 GTC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96726 3 -    811265 GTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179142 3 +   1230721 GTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126939 3 +    465904 ATC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196039 50 -    735872 I
e otoGar3.GL873584                 79939 6777 +  11138919 I
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=13916.000000
s hg38.chrX_KI270880v1_alt         44740 6 +    284869 CCACGC
s panTro5.chrX                    167868 6 + 155549662 CCACGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82865 6 +    105888 CCACGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114213 6 +    417917 CCACGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30642 6 + 141252148 ACACGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103388 6 + 149150640 ACACGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151460 6 +  25972781 ACACGG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96729 6 -    811265 ACCCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179145 6 +   1230721 ACACGG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126942 6 +    465904 CCGCGC
i saiBol1.JH378345             C 0 I 2
s otoGar3.GL873584                 86716 6 +  11138919 CTATGC
i otoGar3.GL873584             I 6777 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196039 50 -    735872 I
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1152339.000000
s hg38.chrX_KI270880v1_alt         44746 222 +    284869 GTGACACGTACCTTGGCCACCAGGCCCATGTCATCCATGGTGGCCCTCTCGTGGGGGAACCGGGCGAAGGTGCTCTCGATCTTGCTGATGACGGCATCCACGTTGACGGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTGGCCGGGGGCAGAGGCTCTTCTTTCCGTGTCTGAACCTGAAGAGTCGACAGACAGC-GCTCA
s panTro5.chrX                    167874 222 + 155549662 GTGACACGCACCTTGGGCACCAGGCCCATGTCGTCCATGGTGGCCCTCTCGTGGGGGAACCGGGCGAAGGTGCTCTCGATCTTGCTGATGACGGCATCCACGTTGATGGAGTCCTGCGGGTGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAAGAGTCGACAGACAGC-GCTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     82871 222 +    105888 TTGACACGCACCTTGGCCACCAGGCCCATGTCGTCCATGGTGGCCCTCTCGTGGGGGAACCGGGCGAAGGTGCTCTCGATCTTGCTGATGACGGCATCCACGTTGACGGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTAGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAAGAGTCGACAGACAGC-GCTCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114219 222 +    417917 GTGACACGCACCTTGGCCACCAGGCCCATGTCGTCCATGGTGGCCCTCTCGTGGGGGAACCGGGCGAAGGTGCTCTCGATCTTGCTGATGACGGCATCCACGTTGACGGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGCAGAGTCGACAGACAGG-GCTCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30648 222 + 141252148 GTGACACGCACCTTGGCCACCAGACCCATGTCATCCATGGTGGCCCTCTCGTGGGGGAACTGGGCGAAAGTGCTCTCGATCTTGCTGATGACGGCATCCACATTGACAGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTTGTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAAGAGTCGACAGACAGC-AGTCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103394 221 + 149150640 GGGACACGCACCTTGGCCACCAGGCCCATGTCGTCCATGGTGGCTCTCTCGTGGGGGAGGCGGGCGAAGGTGCTCTCGATCTTGCTGATGGCGGCATCCACGTTGAGCGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTGCTGGCCGGGGGCAGACGCTCTTCTTTCCGCGTCTGAACCTGAAGAGT-GACGGACAGC-GCTCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151466 221 +  25972781 GGGACACGCACCTTGGCCACCAGGCCCATGTCGTCCATGGTGGCTCTCTCGTGGGGGAAGCGGGCGAAGGTGCTCTCGATCTTGCTGATGGCGGCATCCACGTTGAGCGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTGCTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAAGAGT-GACGGACAGC-GCTCG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96735 221 -    811265 GGGACACGCACCTTGGCCACCAGGCCCATGTCGCCCATGGTGGCCCTCTCGTGGGGGAAGCGGGCCAAGGTGCTCTCGATCTTGCTGATGACGGCGTCCACGTTGACCGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTGCTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAAGAGT-GACAGACAGC-GCTCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179151 221 +   1230721 GTGACACGCACCTTGGCCACCAGGCCCATGTCGTCCATGGTGGCCCTCTCGTGGGGGAACCGGGCGAAGGTGCCCTCGATCTTGCTGATGACGGCATCCACGTTCACGGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTGGTGGCCGGGGGCAGAGGCTCTTCTTTCCGCGTCTGAACCTGAGGAGT-CACAGGCAGC-GTGCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                126950 222 +    465904 GTGACCCGCACCTTGGCCACCAGGCCCATGTCGTCCATGCTGGCCCTCTCCTGGGGGAACTGGGCGAAGGTGCCCTCGATCTTGCTGATGATGGCGTCCACGTTGACGGAGTCCTGCGGGCGGCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTGGCCGGGGGCAGAGGCTCCTGCTTCAGCGTCTGGACCTGATGAGTCAACAGA-AGCAACTCG
i saiBol1.JH378345             I 2 C 0
s cebCap1.NW_016107987v1          196089 221 -    735872 GTGACACACACCTTAGCCACCAGGCCCATGTCGTCCATGCTGGCCCTCTCCTGGGGGAACTGGGCGAAGGTGCCCTCGATCTTGCTGATGACGGCATCCACGTTGACGGAGTCCTGCGGGCGTCCTCTGGGGAAGTAGAAGGTCGGAATGCTTTGGCTCGTGGCCGGGGGCAGAGGCTCCTGCTTCAGCGTCTGGACCTGACGAGTCGACAGA-AGC-ACTCG
i cebCap1.NW_016107987v1       I 50 C 0
s otoGar3.GL873584                 86722 222 +  11138919 CCGGCACCCACCTTGGCCACAAGGCCCATATTCTCCATGGTGGCCCTCTCATGGGGGAATTGGGCAAACGTCCGCTCGATCTTGGTGATGACAGCATCAATGTTCAACGTGTTCTGTGGGCGTCCTCGGGGGAAGTGGAAGGTCGGAATGCTTTGACTCGAGGCAGGGGGGAGGGGTTCCTCCTTCTTCGTCTGAATCTGAGGGAGGAAACACCAGA-ACCCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cerAty1.NW_012001098v1          108941 1311 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=87549.000000
s hg38.chrX_KI270880v1_alt         44968 16 +    284869 GTTAGAACCTGGGAGC
s panTro5.chrX                    168096 16 + 155549662 GTTAGAACCTGGGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83093 16 +    105888 GTTAGAACCTGGGAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114441 16 +    417917 GTTAGAACCTGGGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30870 16 + 141252148 GTTAGAACCTGGGAGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103615 16 + 149150640 GTTACAACCCGGGAGC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151687 16 +  25972781 GTTACAACCCGGGAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110252 16 -   1025902 GTTACAACCCGGGAGC
i cerAty1.NW_012001098v1       I 1311 C 0
s chlSab2.chrUn_KE147541v1         96956 16 -    811265 GTTACAACCCGGGAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179372 16 +   1230721 GTTAGAACCCGGGAGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                127172 16 +    465904 GTTAGAACCTGGGAGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          196310 16 -    735872 GTTAGAAGCTGGGAGC
i cebCap1.NW_016107987v1       C 0 I 841
s otoGar3.GL873584                 86944 13 +  11138919 -TCAGAACCCAAGC--
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=296686.000000
s hg38.chrX_KI270880v1_alt         44984 74 +    284869 -ATCGAACGCCTTCTTCACCCGGA--------CAACACACGGGGCCTCTCTAGGGCCGACAGTGCTGAGGCCACCTGATCCCA
s panTro5.chrX                    168112 74 + 155549662 -GTTGAACGCCTTCTTCACCCGGA--------CAACACACGGGGCCTCTCTAGGGCCAACGGTGCTGAGGCCACCTGATCCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83109 74 +    105888 -ATCGAACGCCTTCTTCACCCGGA--------CAATACACGGGGCCTCTCTAGGGCCGACGGTGCTGAGGCCACCTGATCCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114457 74 +    417917 -ATCAAATGCCTTCTTCACCTGGA--------CAACACACGGGGCCTCTCTAGGGCCGATGGTGCTGAGGCCACCTGACCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30886 74 + 141252148 -ATCGAACGCCTTCTCCACCCAGA--------CAATACAAGGGGCCTTTCTAGGGCTGACGGTGCTCAGGCCACCTGACCCCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103631 74 + 149150640 -ATCGAACGCCTTCTCCACCCGGA--------CAACACGAGGGGCCTCTCCGGGGCCGACGGTGCCGAGGCCGCCTGACCCCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151703 74 +  25972781 -ATCGAACGCCTTCTCCACCCGGA--------CAACACGAGGGGCCTCTCCGGGGCCGACGGTGCCGAGGCCGCCTGACCCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110268 74 -   1025902 -ATGGAACGCCTTCTCCACCCGGA--------CAACACGAGGGGCCTCTCCGGGGCCGACGGTGCCGAGGCCGCCTGACCCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         96972 74 -    811265 -ATTGAACGCCTTCTCCACCCGGA--------CAACACGAGGGGCCTCTCCGGGGCCGACGGTGCCGAGGCCGCCTGACCCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179388 74 +   1230721 -ATCGAACGCCTTCCCCGCCCGGA--------CAACACAAGGGGCGTCTCTGGGGCCGACGGTGCCGAGGCCGCCTGACCCCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                127188 82 +    465904 -CGCTGACGCCTTCTCCACCCGGACACGGGACCAACAGCAAGGGCCTCTCTAGGGCCCATGGCGCCAAGGCCGGCTGATCCCA
i saiBol1.JH378345             C 0 I 544
s otoGar3.GL873584                 86957 58 +  11138919 CATGAAGCAGA-TCCCCACACAGA--------C-ACGCAATGGGC------AGGGTGGGGGATATCCAGATCTA---------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=101274.000000
s hg38.chrX_KI270880v1_alt         45058 30 +    284869 -----GCCGGGAGAGGACACACTGCAATCCCTGCG
s panTro5.chrX                    168186 30 + 155549662 -----GCCGGGAGAGGACACACTGCAATCCCTGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83183 30 +    105888 -----GCTGGGAGAGGACACACTGCAATCCCTGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114531 30 +    417917 -----GCCGGGAGAGGACACAATGCAATCCCTGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30960 30 + 141252148 -----GCCGGGAGAGGACACGCTGCAATCCCTGTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103705 30 + 149150640 -----GCCGGGAGAGGACACGCCGCAGTCCCTGTC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151777 28 +  25972781 -----GCCGGGAGAGGACACGCTGCAGTCC--GTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110342 30 -   1025902 -----GCCGGGAGAGGACACGCCGCAGTCCCTGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97046 30 -    811265 -----GCCGGGAGAGGACAGGCCGCAGTCCCTGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179462 30 +   1230721 -----GCCGGGAGAGGACACGCTGCAGCCCCTGTC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 87015 35 +  11138919 GATGTGAGTGCAGAGAGCGCCAAGAAATCTCTGGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e saiBol1.JH378345                127270 544 +    465904 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=440.000000
s hg38.chrX_KI270880v1_alt         45088 1 +    284869 -G
s panTro5.chrX                    168216 1 + 155549662 -G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83213 1 +    105888 -G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114561 1 +    417917 -G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30990 1 + 141252148 -G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103735 1 + 149150640 -G
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151805 1 +  25972781 -G
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110372 1 -   1025902 -G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97076 1 -    811265 -G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179492 1 +   1230721 -G
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     28266 1 +   2853901 -G
i calJac3.chrY                 N 0 C 0
s otoGar3.GL873584                 87050 1 +  11138919 T-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e saiBol1.JH378345                127270 544 +    465904 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=52400.000000
s hg38.chrX_KI270880v1_alt         45089 10 +    284869 GGGACCACAC
s panTro5.chrX                    168217 10 + 155549662 GGGACCACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83214 10 +    105888 GGGACCACAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114562 10 +    417917 GGGACCACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     30991 10 + 141252148 GGGACCACAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103736 10 + 149150640 GGGACCACAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151806 10 +  25972781 GGGACCACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110373 10 -   1025902 GGGACCACAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97077 10 -    811265 GGGACCACAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179493 10 +   1230721 GGGCCCACAC
i colAng1.NW_012115411v1       C 0 M 350
s calJac3.chrY                     28267  9 +   2853901 -GGGACACTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127814 10 +    465904 GGGGACACTC
i saiBol1.JH378345             I 544 C 0
s otoGar3.GL873584                 87051 10 +  11138919 GTGACCCAAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=273693.000000
s hg38.chrX_KI270880v1_alt         45099 82 +    284869 ACGTACTCCACTGCAGGG--CCCACCTTCACCCAGGAGGCCACACCATGCTGCCATGGACCCC-------ACT-CTGGGTGGCGGCTCTGCG
s panTro5.chrX                    168227 82 + 155549662 ACGTACTCCACTGCAGGG--CACACCTTCACCCAGGAGGCCACACCATGCTGCCATGGACCCC-------ACT-CTGGGTGGCTGCTCTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83224 82 +    105888 ACGTACTCCACTGCAGGG--GCCACCTCCACCCAGGAGGCCACACCATGCTGCCACGGACCCC-------ACT-CTGGGTGGCTGCTCTGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114572 82 +    417917 ACGTACTCCACTGCAGGG--CCCACCTTCACCCAGGAGGCCACACCATGCTGCCATGGACCCC-------ACT-CTGGGTGGCTGCTCTGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31001 81 + 141252148 TCGTACTCCACTGCAGGG---CCACCTCCACCCAGGAAGCCACACGGTGCTGCCACGGACCCC-------ACT-CTGGGTGGCTGCTGTGTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103746 82 + 149150640 GGGTACTGCACTGCAGGG--GCCACCTCCGCCCAGGAGGACACACGACGCTGCCATGGACCCC-------ACG-CTGGGTGGCTGCTCTGCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          151816 82 +  25972781 GGGTACTGCACTGCAGGG--GCCACCTCCGCCCAGGAGGACACACGACGCTGCCACGGACCCC-------ACG-CTGGGTGGCTGCTCTGCA
i macNem1.NW_012017243v1       C 0 I 2394
s cerAty1.NW_012001098v1          110383 82 -   1025902 GGGCACTGCACTGCAGGG--GCCACCTCCGCCCAGGAGGCCACACGACGCTGCCACGGACCCC-------ACG-CTGGGTGGCTGCTCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97087 82 -    811265 GGGTACTGCACTGCTGGG--GCCACCTCTGCCCAGGAGGACACACGACGCTGCCACGCACCCC-------ACC-CTGGGTGGCTGCTCTGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28276 80 +   2853901 ACACA-CCCACCGCAGGG---ACACATGCATCTGGGGGGCTACCTGATACCAACAGGGACCCC-------ACA-GTGGCTCACTGCTCCACA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127824 82 +    465904 ACACACCCCACTGCAGGA---CCACCTCCATCTTGGGGGCTGCCTGATGCCAAGAGGGACCCC-------ACAGGGGGGTGGCTGCTGCACA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 87061 87 +  11138919 --ACGTGGGACTAGAGGGATGTCACCCCCACACA-GAGGCCACTCTACCCTGTGAGCAGCTCTTGCACTGGCA-CTGGAT-GCTGGTCTGTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=49454.000000
s hg38.chrX_KI270880v1_alt         45181 14 +    284869 CCACTGAG-CCCCCA
s panTro5.chrX                    168309 14 + 155549662 CCACTGAG-CCCCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83306 14 +    105888 CCACTGAG-CCCCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114654 15 +    417917 CCACTGAGCCCCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31082 14 + 141252148 CCACTGAG-CCCCCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103828 14 + 149150640 CCACTGAG-CCCCTG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154292 14 +  25972781 CCACTGAG-CCCCCG
i macNem1.NW_012017243v1       I 2394 C 0
s cerAty1.NW_012001098v1          110465 14 -   1025902 CCACTGAG-CCCCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97169 14 -    811265 CCACTGAG-CCCCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28356 11 +   2853901 ---GTGAG-TACCCA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127906  9 +    465904 -----GAG-TACCCA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 87148 14 +  11138919 CCACACGG-CCTCCT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          196326 841 -    735872 I
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=77934.000000
s hg38.chrX_KI270880v1_alt         45195 25 +    284869 TCACACCGAGCAGGGCCCTGGGGAC
s panTro5.chrX                    168323 25 + 155549662 CCACACCGAGCAGGGCCCTGGGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83320 25 +    105888 CCACACCGAGCAGGGGCCTGGGGAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114669 25 +    417917 CCACACCGAGCAGGGCCCTGGGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31096 25 + 141252148 CCACACCGAGCAGGGTCCTGGGGAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103842 25 + 149150640 CCACACCCCACAGGGCCCCGGGGAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154306 25 +  25972781 CCACACCCCACAGGGCCCCGGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110479 25 -   1025902 CCACACCCCACAGGGCCCCGGGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97183 25 -    811265 CCACACCCGGCAGGGCCCTGGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28367 11 +   2853901 TCACACCTGGC--------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127915 11 +    465904 CCTCACCTGGC--------------
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197167 25 -    735872 TCACACCTGGCAGGGGCCTGGGGAC
i cebCap1.NW_016107987v1       I 841 C 0
s otoGar3.GL873584                 87162 22 +  11138919 ---CCCCAAGGTGTTTGCTTTGGAT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=40776.000000
s hg38.chrX_KI270880v1_alt         45220 9 +    284869 AAGGGCAGC
s panTro5.chrX                    168348 9 + 155549662 AAGGGCAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83345 9 +    105888 AAGGGCAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114694 9 +    417917 AAGGGCAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31121 9 + 141252148 AAGGGCAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103867 9 + 149150640 ATGGGCAGC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154331 9 +  25972781 ACGGGCAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110504 9 -   1025902 ACGGGCAGC
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     28378 8 +   2853901 -AGAGCAGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127926 8 +    465904 -AGGGCAGG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197192 9 -    735872 AAGGGCAGC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 87184 9 +  11138919 GAGGACAGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e chlSab2.chrUn_KE147541v1         97208 0 -    811265 C
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=119933.000000
s hg38.chrX_KI270880v1_alt         45229 41 +    284869 TACGTGCCCCAGGCACCTGAGAGCCCAGCCAGGACCCACTC
s panTro5.chrX                    168357 41 + 155549662 TACGTGCCCCAGGAGCCTGAGAGCCCAGCCAGGACCCACTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83354 41 +    105888 TACGTGCCCGAGGCGCCTGAGAGCCCAGCGAGGATCCACTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114703 41 +    417917 TACGTGCCCCAGGCGCCTGAGAGCCCAGCCAGGACCCACTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31130 41 + 141252148 TACGTGCCCCAGATGCCTGAGAGCCCAGCCGGGACCCACTC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103876 39 + 149150640 --CGCACCCCAGACGTCTGAGAGCCCAGCCAGGACCCACTC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154340 41 +  25972781 TGCGTGCCCCAGGCGCCTGAGAGCCCAGCCAGGACCCACTC
i macNem1.NW_012017243v1       C 0 C 0
s calJac3.chrY                     28386 41 +   2853901 CAAGCAACCCAGATGCCCGAGACACCCAAGAGGACTGGCTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127934 41 +    465904 CGAGCAACCCAGATGCCCGAGACGCGCACGAGGACCCGCTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197201 41 -    735872 CCCACGCCTCAGACGCCTGAGAGTCCGGCCAGGATGCGTTC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 87193 39 +  11138919 --AGAGCCCCCAAGCACTGAGAGTCCAGTTGGGACCTGCTC
i otoGar3.GL873584             C 0 I 7737
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e chlSab2.chrUn_KE147541v1         97208  0 -    811265 C
e cerAty1.NW_012001098v1          110513  0 -   1025902 C
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=171976.000000
s hg38.chrX_KI270880v1_alt         45270 56 +    284869 CCGATTCCCATGAGCCACACCACTGACCCCACCACACCTGGCAGGGACCTGGGGAA
s panTro5.chrX                    168398 55 + 155549662 CCGATTCCCATGAGCCACACCACTGACCCCACCACACCTGGCAGGGACCTGGGG-A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83395 56 +    105888 CCGATTCCCATGAGCCACACCACTGACCCCACCACACCTGGCACGGACCTGGGGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114744 56 +    417917 CCGATTCCCATGAGCCACACCACTGACCCCACCGCACCTGGCAGGGACCCGGGGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31171 56 + 141252148 CCGATTCCCAGCAGCCACACCACTGACCCCACCACACCTGGCAGGGCCCCGGGGAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103915 56 + 149150640 CCGACTCCCATGGGCCACAGCACGGACCCCACCACACCCGGCAGGGCCCCGGGGAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154381 56 +  25972781 CCGACTCCCAGGGGCCACAGCACAGACCCCACCACACCCGGCAGGGCCCCGGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s calJac3.chrY                     28427 53 +   2853901 CTGATTCCCATGGGCCACACCAGTGACCTCA---CATCTGGCAGAGCCCTGGGGAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                127975 53 +    465904 CCGATTCCCACGGGCCACACCACTGACCGCA---CGCCTGGCAGGGTCCTGGGGAC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197242 53 -    735872 CCGATTCCCATGGGCCACACCAGTGACCTCA---CACCCGGCAGAGACCTGGGGAC
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         97208  0 -    811265 C
e cerAty1.NW_012001098v1          110513  0 -   1025902 C
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=24604.000000
s hg38.chrX_KI270880v1_alt         45326 11 +    284869 AAGGGCAGC--CA
s panTro5.chrX                    168453 11 + 155549662 AAGGGCAGC--CA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83451 11 +    105888 AAGGGCAGC--CG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114800 11 +    417917 AAGGGCAGC--CA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31227 11 + 141252148 AAGGGCAGC--CG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103971  9 + 149150640 ACGGGCAGC----
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154437  9 +  25972781 ACGGGCAGC----
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97208 11 -    811265 ACGGGCAGCCG--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28480 11 +   2853901 AAGAGCAGC--CC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128028 11 +    465904 AAGGTCAGC--CC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197295 11 -    735872 AAGGACAGC--CG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          110513  0 -   1025902 C
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=360351.000000
s hg38.chrX_KI270880v1_alt         45337 86 +    284869 CGCACCCCAGACGCCTGAGAGCTCAGACGTGGAGAGGCACAGGTGCCGTCCACAGGCAACCC-TGTCCCTGGAGCCCGGAAGACTCA
s panTro5.chrX                    168464 86 + 155549662 CGCACCCCAGACGCCTGAGAGCTCAGATGTGGAGAGGCACAGGTGCCGTCCACAGGCAACCC-TGTCCCTGGAGCCCGGGTGACTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83462 86 +    105888 CGCACCCCAGACGCCTGAGAGCTCAGACGTGGAGAGGCACAGGTGCCGTCCACAGGCAACCC-TGTCCCTGGAGCCCGGAAGACTCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114811 86 +    417917 CGCACCCCAGACGCCTGAGAGCTCAGACGTGGAGAGGCACAGGTGCCGTCCACAGGCAACCC-TGTCCCTGAAGCCTGGGAGACTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31238 86 + 141252148 TGCACCCCAGACGCCTGAGAGCTCAGACGTGGAGAGGCACAGGCGCCGTCCACAGGCAGCCC-TGTCCCTGGAGCCCGGGCGACTCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    103980 85 + 149150640 CGCACCCCAGGCGTCTGAGGGCTCAGATGTGG-GAGGCCCAGGTGCCGTCCACAGGCAGCCC-TGCCCCTGGAGCCCGGGCGACTCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154446 86 +  25972781 CGCACCCCAGACGTGTGAGGGCTCAGACGTGGAGAGGCCCAGGTGCCGTCCACAGGCAGCCC-TGCCCCTGGAGCCCGGGCGACTCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110513 87 -   1025902 CGCACCCCAGACGTCTGAGGGCTCAGACGTGGAGAGGCCCAGGTGCCGTCCACAGGCAGCCCTTGCCCCTGGAGCCCGGGCGACTCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97219 86 -    811265 CGCACCCCAGACATCTGAGGGCTGAGACGTGGAGAGGCCCAGGCGCCGTCCACAGGCAGCCC-TGCCCCTGGAGCCCGGGCGACTCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28491 69 +   2853901 CACGCCCCAGACTCCTGAGGGCACTGACATGGCGAGGCACAA-----------------CCC-TGCCCCCGGAGCCCGGCTGACTCA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128039 69 +    465904 CACGCCCCAGACATCCGAGAGCATGGCCACAGTGAGGCACAG-----------------CCC-TGCCCCTGGAGCCCGGTTGACTCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197306 69 -    735872 CAAACCCCAGACGCCCGAGAGCAGGGACACAGCAAGGCACAG-----------------CCC-TGCCCCTGGAGCCCGGCTGACTCC
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          179503 350 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=747100.000000
s hg38.chrX_KI270880v1_alt         45423 142 +    284869 CATTCTGAGAGGCAGAGGCAG----GGCAGGCAACCACACAGCCAGGAGAAGGGGTCGACCACCAGGTACTGCTGCGGACAC--GCCTCAGCCCCTCACCCGGTGCACAGCCCACGCCCACGGGCTCTTGGCCCCACTCAGCACCAGC
s panTro5.chrX                    168550 142 + 155549662 CATTCTGAGAGGCAGAGGCAG----GGCAGGCAACCACACAGCCAGGAGAAGGGGTCGACCACCAGGTACTGCTGCGGACAC--GCCTCAGCCCCTCAGCCGGTGCACAGCCCACGCCCACGGGCTCTTGGCCCCACTCAGCACCAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83548 142 +    105888 CATTCTGAGAGGCAGAGGCAG----GGCAGGCAACCACACAGCCAGGAGAAGGGGTCGACCACCAGGTACTGCTGCGGACAC--GCCTCAGCCCCTCACCCGGTGCACAGCCCACGCCCACGGGCTCTTGGCCCAACTCAGCACCAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          114897 146 +    417917 CATTCTGAGaggcagaggcagggcaggcaggcaaccacacagccaggAGAAGGGGTTGACCAGCAGGTTCTGCTGCGGACAC--GCCTCAGCCCCTCACCCGGTGCACAGCCCACGCCCACGGGCTCTTGGCCCCACTCAGCACCAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31324 142 + 141252148 CATTCTGAGaggcagaggcag----ggcaggcagccacacagccaggcGAAGGGGTCGACCACCAGGTACTGCTGTGGACAC--GCCTCAGCCCCTCCCCCAGTGCACAGACCACGCCCACGGGCTCTTGGCCCCACTCAGCACTAGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104065 142 + 149150640 CGTCCGGAGAGGCACAGGCAG----GGCAGGCAACCGCACAGCCGGGCGAAGGGGCCGACCGCCAGGTACTGCTGTGGACAC--GCCTCAGCCCCTCACCCAGCCCCTCGCCCGCGCCCACGGGCTCTTGGCCCCACTCAGCATCAGC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154532 142 +  25972781 CGTTCGGAGAGGCACAGGCAG----GGCAGGCAACCGCAGGGCCGGGCGAAGGGGCCGACCGCCAGGTACTGCTGTGGACAC--GCCTCAGCCCCTCACCCAGCCCCTCGCCCGCGCCCACGGGCTCTTGGCCCCACTCAGCATCAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110600 142 -   1025902 CGTTCGGAGAGGCACAGGCAG----GGCAGGCAACCGCACAGCCAGGCGACGGGGTCGACTGCCAGGTACTGCTGTGGAcac--gcctcagcccctcacccagcccctcgcccacgcccacgGGCTCTTGGCCCCACTCAGCATCAGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97305 138 -    811265 CGTTCGGAGAGGCACAGGCAG--------GGCAACCTCACAGCCAGGCCAAGGGGTCGACCACCAGGTACTGCTGTGGACAC--GCCTcagcccctcacccagcccctcacccGCGCCCACGGGCTCTTGGACCCACTCAGCATCAGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          179861 142 +   1230721 CATTCGGAGAGGCACAGGCAG----GGCAGGCAACCACACAGCCAGGCGAAGGGGTCGACCGCCAGGTACCGCCGTGGAcac--gcctcagcccctcgcccagcccctcgcccacgcccacgGGCTCTTGGACCCAGTCAGCATCAGC
i colAng1.NW_012115411v1       M 350 C 0
s calJac3.chrY                     28560 143 +   2853901 CATCCTGAGAGGCAGATGCAG----AGCGGGCACAGACACAGGCAGGTGAGGGGGTCGACCAGCAGGTACTGCTGCGGGCACAAGCCTCAGCCCCTCACCCAGTGCAGAGCCCACG-CCACGGGCTCCCGGTGACACTCACCAACAGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128108 141 +    465904 CATCCTAAGTGGCAGATGGTG----AGCGGGCACCCACAGAGGCAGGAGAGGGCGTCGACCC-CAGGCCCTGCTGC-AACACAAGCCTCAGGCCCTCGCCCAGTGCAGAGCCCAGG-CCACGGGCTCTCGGCGACACTCAGCACCAGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          197375 142 -    735872 CATCCTGAGAGGCAGATGCAG----AGTGGGCACCCACACA-GCAGGAGACGGGGTTGAGCAGCAGGTACTGCTGTGGACACAAGCCTCAGCCCCTCACGCAGTGCAGAGCCCATG-CCACGGGCTCCTGGGGACGCTCAGCACCAGC
i cebCap1.NW_016107987v1       C 0 I 3154
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=529811.000000
s hg38.chrX_KI270880v1_alt         45565 127 +    284869 ACTCTCCTCACCCAGTATATCTGCAGGCCCCAG-AACACTCACTCAAGAGTCTCCTGCTTGCATCTCTACACAACCTGCGAGGTGGA-CATTTGATCTCATCCCGTGATGTTAAAACAC-CATCTGAAAC
s panTro5.chrX                    168692 127 + 155549662 ACTCCCCTCACCCAGTATATCCGCAGGCCCCAG-AACACTCACTCAAGAGTCTCCTGCTTGCATCTCTACACAACCTGCGAGGTGGA-CATTTGATCTCATCCCGTGATGTTAAAACAC-CGTCTGAAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83690 127 +    105888 ACTCCCCTCACCCAGTATATCCGCAGGCCCCAG-AACACTCACTCAAGAGTCTCCTGCTTGCATCTCTACACAACCTGCGAGGTGGA-CATTTGATCTCATTCCGTGACGTTAAAACAC-CCCCTGAAAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          115043 128 +    417917 ACTCCCCTCACCCAGTATATCCGCAGGCCCCAGAAACACTCACTCAAGAGTCTGCTGCTTGCATCTCTACACAACCTGCGAGGTGGA-CATCTGATCTCATCCCGTGATGTTGAAACAC-CGTCGGAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31466 123 + 141252148 ACTCTCCTCACCCAGTATATCCACAGGCCCCAG-AA----CACTCAAGAGTCTCCTGCTTGTATCTCTACACAACCTGAGAGGTGGA-CATTTGATCTCATCCCGTGATGCTAAAACAC-CGCCTGAAAT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104207 127 + 149150640 TCTCCCCTCACCCAGTACGTCCACAGGCCCCGG-AACACGCACTCAAAAGTCTCCTGCTTCAGTTTCTACACAGCCTGCGAGGTGGA-CGTGTGATCTCATCCCGTGATGCTAAAACAC-CGCCTGAAAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154674 127 +  25972781 TCTCCCCTCACCTAGTACGTCCACAGGCCCCAG-AACACGCACTCAAAAGTCTCCTGCTTCAGTCTCTACACAGCCTGCGAGGTGGA-CAATTGATCTCATCCCGTGATGCTAAAACAC-CGCCTGAAAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110742 127 -   1025902 TCTCCCCTCACCCGGTACGTCCACAGGCCCCAG-AACACGCACTCAAAAGTCCCCTGTGTCAATCTCTACACAACCTGCGAGGTGGA-CATTTGATCTCATCCTGCGATGCTAAAACAC-CGCCTGAAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97443 125 -    811265 -CTTCCCTTACCCAGTACGTCCACAGGCCCCAG-AACACGCACTC-AAAGTTCCCTGCTTCAATCTCTACACAGCCTGCGAGGTGGA-CATTTGATCTCATCCTGTGATGCTAAAACAC-CGCCTGAAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180003 126 +   1230721 ACT-CCCTCACCCGCTATATCCACAGGCCCCAG-AACACTCACTCAAAAGTCTCCTGCTTGAATCTCTACACAACCTGCGAGGTGGA-CATCCGATCTCATCCCGTGGCGCTAAAACAC-CGCCTGAAAC
i colAng1.NW_012115411v1       C 0 I 2
s calJac3.chrY                     28703 125 +   2853901 ACTCCCCTCACTCTCAGCACCCGCAGGACCC---ACCACAAGCTCAAGAGTCTCCCGGTTC-ATCTCCAGAAAACCTACGAGCTGTA-TATTTACTGTCATCCCGTGACAGCAAAACACACGAGAAAAAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128249 127 +    465904 TCT-CCCTCACCCGGAGCATCCGCAGGACCCAG-ACCAGTCACTCTACAGTGTCCTGCTTCAATCTCCACAAAACCTGCCAGCTGGATTGTTTACTGTCACTCTGTGATACTGCAACAC-CGAGAAAAAC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=95717.000000
s hg38.chrX_KI270880v1_alt         45692 29 +    284869 AGTTAACAGCATCAGCAACCGTA------------------------------------CTGCGT
s panTro5.chrX                    168819 29 + 155549662 AGTTAACGGCATCAGCAACCGTA------------------------------------CTGCGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83817 29 +    105888 AGTTAACGGGATCAGCAACCGTA------------------------------------CTGCGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          115171 65 +    417917 AGTTAACGGCCTCAGCAACCGTACTGCGTCCTCCCCCATCAACTACTCAGGGGACGGGGCTGCGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31589 29 + 141252148 GGTTAACGGCATCGGCAACCGTA------------------------------------TTGCGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104334 29 + 149150640 GGTTAACGGCGTCAGCGACCGCA------------------------------------CTGCGT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154801 29 +  25972781 GGTTAACGGCGTCAGCGACCGCA------------------------------------CTGCGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110869 29 -   1025902 GGTTAACGGCGTCAGCAACCGTA------------------------------------CTGCGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97568 29 -    811265 GGTTAACGGCATCAGCGACCGTA------------------------------------CTGCGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28828 29 +   2853901 GGTCAATGACATCAGCAAGCAAA------------------------------------CAGCGT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128376 29 +    465904 AGTCCACGACGTCAGCAACCACA------------------------------------CGGTGC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180129  2 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=33742.000000
s hg38.chrX_KI270880v1_alt         45721 9 +    284869 CCTCCTCCA
s panTro5.chrX                    168848 9 + 155549662 CCTCCTCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83846 9 +    105888 CCTCCTCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          115236 9 +    417917 CCTCCCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31618 9 + 141252148 CCTCCCCCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104363 9 + 149150640 CCTGCTCCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154830 9 +  25972781 CCTCCTCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          110898 9 -   1025902 CCTGCTCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97597 9 -    811265 CCTCCTCCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     28857 9 +   2853901 CCTCCTCCA
i calJac3.chrY                 C 0 M 557
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180129 2 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=58866.000000
s hg38.chrX_KI270880v1_alt         45730 19 +    284869 TCAACTGCCCAAGGGACGG
s panTro5.chrX                    168857 19 + 155549662 TCAACTGCCCAAGGGACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83855 19 +    105888 TCAACTACCCAGGGGACGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          115245 19 +    417917 TCAACTACCCAGGGGACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31627 19 + 141252148 TCAACTGCCCAAGGGACGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104372 19 + 149150640 CCAACCGCCCAGGGGACGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          154839 19 +  25972781 TCAACCGCCCAGGGGACGG
i macNem1.NW_012017243v1       C 0 I 227
s cerAty1.NW_012001098v1          110907 19 -   1025902 TCAACCGCCCAGGGGACGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97606 19 -    811265 TCAACCGCCCAGGGGACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180129  2 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=36803.000000
s hg38.chrX_KI270880v1_alt         45749 18 +    284869 TGCTGCGTCCTCCCCCAC
s panTro5.chrX                    168876 18 + 155549662 GGCTGCGTCCTCCTCCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83874 17 +    105888 -GCTGCGTCCTCCTCCTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          115264 18 +    417917 GGCTGCGTCCTCCTCCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31646 18 + 141252148 TGCTGTGTCCTCCTCCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104391 17 + 149150640 -GCCGTGTCCTTCTCCAC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          110926 18 -   1025902 GGCCGTGTCCTTCTCCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97625 18 -    811265 GGCCGTGTCCTCCTCCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180129  2 +   1230721 I
e macNem1.NW_012017243v1          154858 227 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=5125.000000
s hg38.chrX_KI270880v1_alt         45767 6 +    284869 CATCAA
s panTro5.chrX                    168894 6 + 155549662 CATCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     83891 6 +    105888 CATCAA
i panPan2.chrUn_NW_014024225v1 C 0 M 6574
s gorGor5.CYUI01015925v1          115282 6 +    417917 CATCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31664 6 + 141252148 CATCAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104408 5 + 149150640 CAT-GA
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          110944 5 -   1025902 CAT-GA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97643 3 -    811265 CA---A
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180131 6 +   1230721 CATCGA
i colAng1.NW_012115411v1       I 2 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macNem1.NW_012017243v1          154858 227 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=28065.000000
s hg38.chrX_KI270880v1_alt         45773 13 +    284869 CTACTGAAGGGAC
s panTro5.chrX                    168900 13 + 155549662 CTACTGAAGGGAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115288 13 +    417917 CTACTCAGGGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31670 13 + 141252148 CTGCTGAAGGGAC
i nomLeu3.chrX                 C 0 I 281
s rheMac8.chrX                    104413 13 + 149150640 CTACTGAGGGGAC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          110949 13 -   1025902 CTACTGAGGGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97646 13 -    811265 CTACCCAGGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180137 13 +   1230721 CTACTCAGGGGAC
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macNem1.NW_012017243v1          154858 227 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=10001.000000
s hg38.chrX_KI270880v1_alt         45786 12 +    284869 GGGGCTGCG---TCC
s panTro5.chrX                    168913 12 + 155549662 GGGGCTGCG---TCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115301 12 +    417917 GGGGCTGCG---TCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31964 12 + 141252148 GGGGCTGCG---TCC
i nomLeu3.chrX                 I 281 C 0
s rheMac8.chrX                    104426  8 + 149150640 -GGGCTGTG------
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          110962  8 -   1025902 -GGGCTGTG------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97659  9 -    811265 GGGGCTGTA------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180150 12 +   1230721 GGGGCCGCGTCC---
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macNem1.NW_012017243v1          154858 227 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=20931.000000
s hg38.chrX_KI270880v1_alt         45798 9 +    284869 TCCTCCTCC
s panTro5.chrX                    168925 7 + 155549662 TCCTCCT--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115313 9 +    417917 TCCTCCTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31976 9 + 141252148 TCCTCCCCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104434 9 + 149150640 TCCTCCCCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          155085 9 +  25972781 TCCTCCTCC
i macNem1.NW_012017243v1       I 227 C 0
s cerAty1.NW_012001098v1          110970 9 -   1025902 TCCTCCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97668 6 -    811265 ---TCCTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180162 9 +   1230721 TCCTCCTCC
i colAng1.NW_012115411v1       C 0 I 30
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=33647.000000
s hg38.chrX_KI270880v1_alt         45807 15 +    284869 TCCAACTACCCAGGG
s panTro5.chrX                    168932 13 + 155549662 --CAACTACCCAGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115322 15 +    417917 ATCAACTACTCAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     31985 15 + 141252148 ATCAACTACCCAGGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104443 15 + 149150640 ACCAACTACCCAGGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          155094 15 +  25972781 TCCAACTACCCAGGG
i macNem1.NW_012017243v1       C 0 I 891
s cerAty1.NW_012001098v1          110979 15 -   1025902 ATCAACTACCCAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97674 15 -    811265 TCCAACTACCCAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=28262.000000
s hg38.chrX_KI270880v1_alt         45822 25 +    284869 AACGGGGCTGTGTCCT--------------------------------------TCCCCATCA
s panTro5.chrX                    168945 25 + 155549662 AACGGGGCTGTGTCCT--------------------------------------TTCCCATCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115337 63 +    417917 GACGGGGCTGTGTCCTCCTCCACCATCAACTACCCAGGGGACGGGGCTGCGTCCTCCCCATCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     32000 25 + 141252148 GACGGGGCTGTGTCCT--------------------------------------TCTCCATCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104458 24 + 149150640 GAC-GGGCCGTGTCCT--------------------------------------CCTCCACCA
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          110994 25 -   1025902 GACGGGGCTGTGTCCT--------------------------------------TCTCCACCA
i cerAty1.NW_012001098v1       C 0 I 17
s chlSab2.chrUn_KE147541v1         97689 24 -    811265 GAT-GGGCTGTGTCCT--------------------------------------CCTCCACCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=9038.000000
s hg38.chrX_KI270880v1_alt         45847 7 +    284869 ACTACTC
s panTro5.chrX                    168970 7 + 155549662 ACTACTC
i panTro5.chrX                 C 0 I 607
s gorGor5.CYUI01015925v1          115400 7 +    417917 ACTACCC
i gorGor5.CYUI01015925v1       C 0 I 2
s nomLeu3.chrX                     32025 7 + 141252148 ACTACCC
i nomLeu3.chrX                 C 0 I 1083
s rheMac8.chrX                    104482 7 + 149150640 ACTACCC
i rheMac8.chrX                 C 0 I 2
s chlSab2.chrUn_KE147541v1         97713 7 -    811265 ACTACCC
i chlSab2.chrUn_KE147541v1     C 0 I 2
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          111019 17 -   1025902 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=6920.000000
s hg38.chrX_KI270880v1_alt         45854 7 +    284869 GGGACGA
s panTro5.chrX                    169584 7 + 155549662 GGGACGA
i panTro5.chrX                 I 607 C 0
s gorGor5.CYUI01015925v1          115409 7 +    417917 GGGACGG
i gorGor5.CYUI01015925v1       I 2 C 0
s nomLeu3.chrX                     33115 7 + 141252148 GGGACGG
i nomLeu3.chrX                 I 1083 C 0
s rheMac8.chrX                    104491 7 + 149150640 GGGACGG
i rheMac8.chrX                 I 2 C 0
s chlSab2.chrUn_KE147541v1         97722 6 -    811265 GGGACG-
i chlSab2.chrUn_KE147541v1     I 2 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          111019 17 -   1025902 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=2100.000000
s hg38.chrX_KI270880v1_alt         45861 1 +    284869 G
s panTro5.chrX                    169591 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115416 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33122 1 + 141252148 G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104498 1 + 149150640 G
i rheMac8.chrX                 C 0 I 188
s cerAty1.NW_012001098v1          111036 1 -   1025902 G
i cerAty1.NW_012001098v1       I 17 C 0
s chlSab2.chrUn_KE147541v1         97728 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=5089.000000
s hg38.chrX_KI270880v1_alt         45862 5 +    284869 GCTTC
s panTro5.chrX                    169592 5 + 155549662 GCTGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115417 5 +    417917 GCTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33123 5 + 141252148 GCTGC
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          111037 5 -   1025902 GCTGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97729 5 -    811265 GCTGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e rheMac8.chrX                    104499 188 + 149150640 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=44153.000000
s hg38.chrX_KI270880v1_alt         45867 30 +    284869 GTCCTCCCCCATCAACTACTCAGGGGAC-AG
s panTro5.chrX                    169597 30 + 155549662 GTCCTCCCCTATCAACTACTCAGGGGAC-GG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          115422 30 +    417917 GTCCTCCCCCATCAACTACCCAGGGGAC-GG
i gorGor5.CYUI01015925v1       C 0 I 891
s nomLeu3.chrX                     33128 30 + 141252148 GTCCTCCCCCATCAACTACTCAGGGGAC-GG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104687 29 + 149150640 GTCCTCCTCCTCCAACTACCCAGGGGAC-G-
i rheMac8.chrX                 I 188 C 0
s cerAty1.NW_012001098v1          111042 29 -   1025902 GTCCTCCCCCATCAACTACCCAGGGGAC-G-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97734 30 -    811265 GTCCCCCTCCACCAACTACCCAGGGGACGG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=40637.000000
s hg38.chrX_KI270880v1_alt         45897  43 +    284869 GGCTGTGTCCTCCTTGACCAACTACCTAGGGA-------------------------------------------------------------------------ATGGGGCTGCG
s panTro5.chrX                    169627 115 + 155549662 GGCTGTGTCCTCCTCCATCAACTACCCAGGGAAC-GGGGCTGTGTCCTTCCCCATCAACTACTCAGGGGACGGGGCTGTGTCCTTCCCCATCAACTACTCAGGGGACGGGGCTGCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116343  43 +    417917 GGCTGTGTCCTCCTCGACCAGCTACTTAGGGA-------------------------------------------------------------------------ATGGGGCTGCG
i gorGor5.CYUI01015925v1       I 891 C 0
s nomLeu3.chrX                     33158  78 + 141252148 GGCTGCATCATCCCCCATCAACTACCCAGGGGACGGG--------------------------------------CTACGTCCTCCTCCATCAACTACCCAGGGAATGAGGCTGCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104716  42 + 149150640 GGCTGTGTCCTCCCCCACCAACTACCCAGGGG-------------------------------------------------------------------------AC-GGGCCGTG
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          111071  43 -   1025902 GGCTGTGTCCTCCTCCACCAACTACCCAGGGG-------------------------------------------------------------------------ACGGGGCTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97764  43 -    811265 GGCTGTGTCCCCCTCCTCCAACTACCCAGGGG-------------------------------------------------------------------------ACGGGGCCGCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          197517 3154 -    735872 I
e saiBol1.JH378345                128405   0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171  30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=12222.000000
s hg38.chrX_KI270880v1_alt         45940 6 +    284869 TCCTCC
s panTro5.chrX                    169742 6 + 155549662 TCCTCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116386 6 +    417917 TCCTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33236 6 + 141252148 TCCTCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104758 6 + 149150640 TCCTCC
i rheMac8.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         97807 6 -    811265 TCCTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s cebCap1.NW_016107987v1          200671 6 -    735872 tcctcc
i cebCap1.NW_016107987v1       I 3154 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128405 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          111114 0 -   1025902 C
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macNem1.NW_012017243v1          155109 891 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=546.000000
s hg38.chrX_KI270880v1_alt         45946 1 +    284869 T
s macNem1.NW_012017243v1          156000 1 +  25972781 T
i macNem1.NW_012017243v1       I 891 C 0
s cerAty1.NW_012001098v1          111114 1 -   1025902 T
i cerAty1.NW_012001098v1       C 0 C 0
s cebCap1.NW_016107987v1          200677 1 -    735872 t
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128405 0 +    465904 C
e nomLeu3.chrX                     33242 0 + 141252148 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e panTro5.chrX                    169748 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         97813 0 -    811265 C
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e rheMac8.chrX                    104764 0 + 149150640 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          116392 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=5593.000000
s hg38.chrX_KI270880v1_alt         45947 6 +    284869 CCTCCT
s panTro5.chrX                    169748 3 + 155549662 ---CCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116392 4 +    417917 --TCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33242 3 + 141252148 ---CCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104764 4 + 149150640 --TCCT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156001 6 +  25972781 CCTCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111115 6 -   1025902 CCTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         97813 1 -    811265 -----T
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                128405 6 +    465904 CCTCGT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200678 6 -    735872 cctcct
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180171 30 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=66432.000000
s hg38.chrX_KI270880v1_alt         45953 24 +    284869 CCATCAACTACTCAGGGGACGGG---G
s panTro5.chrX                    169751 22 + 155549662 --ATCAACTACTCAGGGGACGGG---G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116396 24 +    417917 CCATCAACTACTCAGGGGATGGG---G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33245 22 + 141252148 --ATCAACTACTCAGGGGACGGG---G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104768 24 + 149150640 CCACCAACTACCCAGGGGACGGGG---
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156007 23 +  25972781 CCACCAACTACCCAGGAGACGGG----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111121 23 -   1025902 CCATCAACTACCCAGGGGACGGG----
i cerAty1.NW_012001098v1       C 0 I 771
s chlSab2.chrUn_KE147541v1         97814 24 -    811265 CCTCCAACTACCCAGGGGACGGG-G--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180201 24 +   1230721 CCACCAACCACTCATGGGACGGG--G-
i colAng1.NW_012115411v1       I 30 C 0
s saiBol1.JH378345                128411 23 +    465904 CCATCAACTACCCAGGGACGGGG----
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200684 23 -    735872 cctccAACTACCCAGGGACCAGG----
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=39957.000000
s hg38.chrX_KI270880v1_alt         45977 9 +    284869 CTGTGTCCT
s panTro5.chrX                    169773 9 + 155549662 CTGTGTCCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116420 9 +    417917 CTGTGTCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33267 9 + 141252148 CTGTGTCCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104792 9 + 149150640 CCGTGTCCT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156030 8 +  25972781 -CGTGTCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111915 9 -   1025902 CTGTGTCCT
i cerAty1.NW_012001098v1       I 771 C 0
s chlSab2.chrUn_KE147541v1         97838 9 -    811265 CCGTGTCCT
i chlSab2.chrUn_KE147541v1     C 0 I 431
s colAng1.NW_012115411v1          180225 9 +   1230721 CCGCGTCCT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                128434 9 +    465904 CTGCGTCCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200707 9 -    735872 CTGCGTCCT
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=24375.000000
s hg38.chrX_KI270880v1_alt         45986 6 +    284869 CCTCAA
s panTro5.chrX                    169782 6 + 155549662 CCTCAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116429 6 +    417917 CCTCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33276 6 + 141252148 CCTCGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104801 6 + 149150640 CCTCCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156038 6 +  25972781 CCTCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111924 6 -   1025902 CCTCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98278 6 -    811265 CCTCCA
i chlSab2.chrUn_KE147541v1     I 431 C 0
s colAng1.NW_012115411v1          180234 6 +   1230721 CCTCCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                128443 6 +    465904 CCTCCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200716 6 -    735872 CCTCCA
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     28866 557 +   2853901 M
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=161620.000000
s hg38.chrX_KI270880v1_alt         45992 34 +    284869 CCAACTGCCATGGAGGAGGGGTCCAGGGAGGAAG
s panTro5.chrX                    169788 34 + 155549662 CCAACTGCCATGGAGGAGGGGTCCAGGGAGGAAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116435 34 +    417917 CCAACTGCCATGGAGGAGGGGTCCAGGGAGGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33282 33 + 141252148 CCAACTGCCATGGAGGA-GGTTCCGGGGAGGAAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104807 34 + 149150640 CCAACTGCCGTGGAGGAGGGGTCCCGGGAGGAAG
i rheMac8.chrX                 C 0 I 14
s macNem1.NW_012017243v1          156044 34 +  25972781 CCAACTGCCGTGGAGAAGGGGTCCCGGGAGGAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111930 34 -   1025902 CCAACTGCCGTGGAGGAGGGGTCCCGGGAGGAAG
i cerAty1.NW_012001098v1       C 0 I 14
s chlSab2.chrUn_KE147541v1         98284 34 -    811265 CCAAGTGCCACGGAGGAGGGGTCCGGGGAGGAAG
i chlSab2.chrUn_KE147541v1     C 0 I 14
s colAng1.NW_012115411v1          180240 34 +   1230721 CCAAGTGCCATGGAGGAGCGGTCCGGGGAGGAAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     29426 34 +   2853901 CCAAGTCTTATGGAGGAGAGGTCCGGGGAGGAAG
i calJac3.chrY                 M 557 C 0
s saiBol1.JH378345                128449 34 +    465904 CCAACTCCCACGGAGCAGAGGTCGAGGTACGAAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200722 34 -    735872 CCAACTCTCACGGAGGAGAGGTCCGGGGAGGAAG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=2358.000000
s hg38.chrX_KI270880v1_alt         46026 8 +    284869 TCCGCATA-
s panTro5.chrX                    169822 8 + 155549662 TCCCCATA-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116469 8 +    417917 TCCCCATA-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33315 8 + 141252148 TCCCCATA-
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156078 6 +  25972781 --CTCGGG-
i macNem1.NW_012017243v1       C 0 I 9
s colAng1.NW_012115411v1          180274 8 +   1230721 TCCTCATA-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     29460 8 +   2853901 -TCCCAGAA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128483 8 +    465904 -TCCCAGAA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200756 8 -    735872 -GCCCAGAG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98318 14 -    811265 I
e cerAty1.NW_012001098v1          111964 14 -   1025902 I
e rheMac8.chrX                    104841 14 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=70349.000000
s hg38.chrX_KI270880v1_alt         46034 16 +    284869 CCAGTGGACCACAGCT
s panTro5.chrX                    169830 16 + 155549662 CCAATGGACCACAGCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116477 16 +    417917 CCAATGGGCCACAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33323 16 + 141252148 CCAATGGACCACAGCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104855 16 + 149150640 CCGATGGACCACAGCT
i rheMac8.chrX                 I 14 C 0
s macNem1.NW_012017243v1          156093 15 +  25972781 CCGAT-GACCACAGCT
i macNem1.NW_012017243v1       I 9 C 0
s cerAty1.NW_012001098v1          111978 16 -   1025902 CCGATGGACCCCAGCT
i cerAty1.NW_012001098v1       I 14 C 0
s chlSab2.chrUn_KE147541v1         98332 16 -    811265 TCAATGGACCACAGCC
i chlSab2.chrUn_KE147541v1     I 14 C 0
s colAng1.NW_012115411v1          180282 16 +   1230721 CCAATGGACCACAGCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     29468 16 +   2853901 CCCCTGGACCACAGGT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128491 16 +    465904 CCAGTGGACCACCGCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          200764 16 -    735872 CCAATGGACCACACGT
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=294328.000000
s hg38.chrX_KI270880v1_alt         46050 81 +    284869 CAGGGCCTTTGC-ACCCACAATCCTGACTGCCTG--GATCAATCCAGGACTGGGTCCAAGC-TCCAGTGTCCACACAGAGAAAAC
s panTro5.chrX                    169846 81 + 155549662 CAGGGCCTTTGC-ACCCACAATCCTGACTGCCTG--GATCAATCCAGGACTGGGTCCAAGC-TCCAGTGTCCTCACAGAGAAAAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116493 81 +    417917 CAGGGCCTTTGC-ACCCACAATCCTGACTGCCTG--GATCAATCCAGGACTGGGTCCAAGC-TCCAGTGTCCACACAGAGAAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33339 81 + 141252148 CAGGGCCTTTGC-ACCCACAATCCTGACTGCCTC--GATCAATCCAGGACTGGGTCCGAGC-TCCAGTGTCCTCACAGAGAAAAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104871 81 + 149150640 CAGGGCCTTTGC-AGCCACAATCCTGACTGCCAG--GATCAATCCAGGCCTGGGTCGCAGC-TCCAGTGTCCTCACAGAGAACAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156108 84 +  25972781 CAGGGCCTTTGCAAGCCCAGATCCTGACTGCCCGGCGATCAATCCAGGCCTGGGTCGCAGCTTCCAGTGTCCTCA-AGAGAACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          111994 81 -   1025902 CAGCGCCTTTGC-AGCCACAATCCTGACTGCCGG--GATCAATCCAGGCCTGGGTCCCAGC-TCCAGTGTCCTCACAGAGAACAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98348 81 -    811265 CAGGGCCTTTGC-AGCCGCAGTCCTGACTGCCGG--GATCAATGCAGGCCTGGGTCCCAGC-TCCAGTGGCCTCACAGAGAACAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180298 81 +   1230721 CAGGGCCTCTGC-AGCCACAATCCTGACTGCCGG--GATCACTCCAGGCCTGGCTCCAAGC-TCCAGTGTCCTCACAGAGAACAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     29484 80 +   2853901 CAGCTTCTTTGG-GCTCACAGTCCTGACTGCCT---GATCGACGCAGGACTGGGTCCCAGA-TGCAGTGTCCTCAGAGAGCAGGT
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          200780 80 -    735872 CAGCGTCTTTGG-GCTCAGAATCCTGACTCCCT---GATCAATGCAGGCCTGGGTCCCAGC-TGCAGTGTCCTCACAGAGCAAAG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=148777.000000
s hg38.chrX_KI270880v1_alt         46131 48 +    284869 ---AGCCCGCCCTGCTACTCCCACAGGACCCTCACCCCAGGTCACAAGGGT
s panTro5.chrX                    169927 48 + 155549662 ---AGCCCACCCAGCCACTCCCACAGGACCCTCACCGCAGGTCACAAGGGT
i panTro5.chrX                 C 0 I 70
s gorGor5.CYUI01015925v1          116574 48 +    417917 ---AGCCCACCCTGCCACTCCCACAGGACTCTCACCCCAGGTCACAAGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33420 48 + 141252148 ---AGTCCACCCTGCTGTCCCTACAGGACCCTCACCCCAGGTCACAAGGGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    104952 48 + 149150640 ---AGCCCACCCTGCTACTGCCACAGGACCCTCACCCCACGTCACAAGGGT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156192 45 +  25972781 ---AGCCCACCCCGCTACTGCCACAAGA-CCTCACCCCACGTCACA--GGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112075 48 -   1025902 ---AGCCCACCCTGCTACTGCCACAGGACCCTCACCCCAGGTCACAAGGGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98429 48 -    811265 ---GGCCCACCCTGCTACTCCCACAGGACCCTCACCCCAGGTCACAAGGGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180379 47 +   1230721 ---AGCCCACCCTGCTCCTCCCACAGGACCCTCACCCCAGGTCCCAAGGG-
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          200860 50 -    735872 AAACCCCCACCCTGCTGCTCCCAC-GGTCCCTCAGGCCAGGTCACAAGGGT
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=21749.000000
s hg38.chrX_KI270880v1_alt         46179 6 +    284869 CCCACA
s panTro5.chrX                    170045 6 + 155549662 CCCACC
i panTro5.chrX                 I 70 C 0
s gorGor5.CYUI01015925v1          116622 6 +    417917 CCCACC
i gorGor5.CYUI01015925v1       C 0 I 280
s nomLeu3.chrX                     33468 6 + 141252148 CCCACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105000 6 + 149150640 CCCACA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156237 6 +  25972781 CCCACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112123 6 -   1025902 CCCACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98477 6 -    811265 CCCACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180426 5 +   1230721 -CCACA
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          200910 6 -    735872 CCCACA
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=32590.000000
s hg38.chrX_KI270880v1_alt         46185 10 +    284869 GACAGCACCC
s panTro5.chrX                    170051 10 + 155549662 GACAGCGCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116908 10 +    417917 GACAGCGCCC
i gorGor5.CYUI01015925v1       I 280 C 0
s nomLeu3.chrX                     33474 10 + 141252148 GACAGCGCCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105006  9 + 149150640 CACAGCGCC-
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          156243 10 +  25972781 CACAGCGCCC
i macNem1.NW_012017243v1       C 0 I 3212
s cerAty1.NW_012001098v1          112129 10 -   1025902 CACAGCGCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98483 10 -    811265 GACAGCGCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180431 10 +   1230721 GACAGCGCCC
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          200916 10 -    735872 GACAGCACCC
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=16857.000000
s hg38.chrX_KI270880v1_alt         46195  8 +    284869 -CA-ACTGTC
s panTro5.chrX                    170061  8 + 155549662 -CA-AATGTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116918  8 +    417917 -CA-ACTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33484  8 + 141252148 -CA-ACTGTC
i nomLeu3.chrX                 C 0 T 69
s rheMac8.chrX                    105015  8 + 149150640 -CA-ACTGTC
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          112139  8 -   1025902 -CA-ACGGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98493  8 -    811265 -CA-ACGGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180441  8 +   1230721 -CA-ACTGTC
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          200926 10 -    735872 CCACCCCGTC
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=1000.000000
s hg38.chrX_KI270880v1_alt         46203 1 +    284869 C
s panTro5.chrX                    170069 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116926 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          180449 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          200936 1 -    735872 C
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33492 69 + 141252148 T
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501 0 -    811265 C
e cerAty1.NW_012001098v1          112147 0 -   1025902 C
e rheMac8.chrX                    105023 0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=3000.000000
s hg38.chrX_KI270880v1_alt         46204 2 +    284869 CC
s panTro5.chrX                    170070 2 + 155549662 CC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116927 2 +    417917 CC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33423 2 + 141252148 CC
i nomLeu3.chrX                 T 69 C 0
s colAng1.NW_012115411v1          180450 2 +   1230721 CC
i colAng1.NW_012115411v1       C 0 I 31
s cebCap1.NW_016107987v1          200937 2 -    735872 CC
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     29564 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501 0 -    811265 C
e cerAty1.NW_012001098v1          112147 0 -   1025902 C
e rheMac8.chrX                    105023 0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=7242.000000
s hg38.chrX_KI270880v1_alt         46206 8 +    284869 ACCCTGCT
s panTro5.chrX                    170072 8 + 155549662 ACCCTGCT
i panTro5.chrX                 C 0 T 105
s gorGor5.CYUI01015925v1          116929 8 +    417917 ACCCTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33425 8 + 141252148 ACCCTGCT
i nomLeu3.chrX                 C 0 C 0
s cebCap1.NW_016107987v1          200939 8 -    735872 ACCCTGCT
i cebCap1.NW_016107987v1       C 0 I 256
e calJac3.chrY                     29564 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501 0 -    811265 C
e cerAty1.NW_012001098v1          112147 0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023 0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=-684.000000
s hg38.chrX_KI270880v1_alt         46214 3 +    284869 -ACT
s gorGor5.CYUI01015925v1          116937 3 +    417917 -ACT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33433 3 + 141252148 GTC-
i nomLeu3.chrX                 C 0 C 0
e calJac3.chrY                     29564 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e panTro5.chrX                    170080 105 + 155549662 T
e chlSab2.chrUn_KE147541v1         98501 0 -    811265 C
e cerAty1.NW_012001098v1          112147 0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023 0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=6818.000000
s hg38.chrX_KI270880v1_alt         46217 39 +    284869 GCCACAGTATCCTCACCGCAGGTCACAAGGGTCCCA----CAG
s panTro5.chrX                    169975 11 + 155549662 GCCACAGT--------------------------------CAG
i panTro5.chrX                 T 105 C 0
s gorGor5.CYUI01015925v1          116940 43 +    417917 CCCACAGGACCCTCACCCCAGGTCACAAGGGTCCCACAGTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33436 39 + 141252148 CCTACAGGACCCTCACCCCAGGTCACAAGGGTCCCA----CAG
i nomLeu3.chrX                 C 0 I 4
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501  0 -    811265 C
e cerAty1.NW_012001098v1          112147  0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023  0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=17247.000000
s hg38.chrX_KI270880v1_alt         46256 34 +    284869 CGCCCCAACTGTCCCCACCCTGCTACTCCCACAG
s panTro5.chrX                    169986 34 + 155549662 CGCCCCAACTGTCCCCACCCTGCTACTCCCACAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          116983 34 +    417917 CGCCCCAACTGTGCCCACCCTGCCACTCCCACAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33479 34 + 141252148 CGCCCCAACTGTCCCCACCCTGCTGTCCCTACAG
i nomLeu3.chrX                 I 4 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501  0 -    811265 C
e cerAty1.NW_012001098v1          112147  0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023  0 + 149150640 C
e macNem1.NW_012017243v1          156253 3212 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=12370.000000
s hg38.chrX_KI270880v1_alt         46290 16 +    284869 GACCCTCACCCCAGGT
s panTro5.chrX                    170020 16 + 155549662 GACCCTCACCCCAGGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117017 16 +    417917 GACTCTCACCCCAGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33513 16 + 141252148 GACCCTCAGCCAAGGT
i nomLeu3.chrX                 C 0 T 37
s macNem1.NW_012017243v1          159465 16 +  25972781 GACCCTCACCCCACGT
i macNem1.NW_012017243v1       I 3212 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501  0 -    811265 C
e cerAty1.NW_012001098v1          112147  0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023  0 + 149150640 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=14224.000000
s hg38.chrX_KI270880v1_alt         46306 33 +    284869 CACAAGGGTCCCACTGACAGCGCCTCAACTGTG
s panTro5.chrX                    170036 33 + 155549662 CACAAGGGTCCCACCGACAGCGCCCCAAATGTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117033 33 +    417917 CACAAGGGTCCCACCGACAGCGCCCCAACTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          159481 32 +  25972781 CACAAGGGTCCCACACACAGCGCC-CAACTGTC
i macNem1.NW_012017243v1       C 0 C 0
e calJac3.chrY                     29564  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e nomLeu3.chrX                     33529 37 + 141252148 T
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98501  0 -    811265 C
e cerAty1.NW_012001098v1          112147  0 -   1025902 C
e colAng1.NW_012115411v1          180452 31 +   1230721 I
e rheMac8.chrX                    105023  0 + 149150640 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=68930.000000
s hg38.chrX_KI270880v1_alt         46339  34 +    284869 CCCACCCTG-------------------------------------------------------CTGTC--------------GCTGCAGGACCCTCACCCAC
s panTro5.chrX                    170069  34 + 155549662 CCCACCCTG-------------------------------------------------------CTGTC--------------CCTACAGGACCCTCACCCAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117066 103 +    417917 CCCACCCTGCCACTCCCACAGGACTCTCACCCAGGTCACAAGGGTCCCACAGTCAGCGCCCCAACTGTCCCCACCCTGCCACTCCCACAGGACTCTCACCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33492  34 + 141252148 CCCACCCTG-------------------------------------------------------CTGTC--------------CCTACAGGACCCTCAGCCAA
i nomLeu3.chrX                 T 37 C 0
s rheMac8.chrX                    105023  34 + 149150640 CCCACCCTG-------------------------------------------------------CTGTC--------------TCCACAGGGCCCTCACCCCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          159513  34 +  25972781 CCCACCCTG-------------------------------------------------------CTGTC--------------TCCACAGGGCCCTCACCCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112147  34 -   1025902 CCCACCCTG-------------------------------------------------------CTGTC--------------TCCACAGGGCCCTCACCCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98501  34 -    811265 CCCACCCTG-------------------------------------------------------CTGTC--------------TCCACAGGGCCCTCACTCCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29564  34 +   2853901 CCCCCCCTG-------------------------------------------------------CTGTC--------------CCCATGGGACCCTTGCCCAC
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507   0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180452  31 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=139281.000000
s hg38.chrX_KI270880v1_alt         46373 42 +    284869 GGTGAGACTCAGTT-GTTTTTCTCTGATCCCCATGTAGGAGGA
s panTro5.chrX                    170103 42 + 155549662 GGTAAGACTCAGTT-GTTTTTCTCTGATCCCCATGTAGGAGGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117169 42 +    417917 GGTGAGACTCAGTT-GTTTTTCTCTGATCCCCATGTAGGAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33526 42 + 141252148 GGTGAGACTCAGTT-GTTTTTCTCTGATCCCCATCTAGGAGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105057 42 + 149150640 GGTGAGACTCCGCT-GCTTTTCTCTGATCCCCATCTAGGAGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          159547 42 +  25972781 GGTGAGACTCCGCT-GCTTTACTCTGATCCCCATCTAGGAGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112181 39 -   1025902 GGTGAGACTCCGCT-G---TTCTCTGATCCCCATCTAGGAGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98535 42 -    811265 GGTGAGACTCCGCT-GCCTTTCTCTGATCCCCATCTAGGAGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          180483 42 +   1230721 GGTGAGACTCCGTT-GTCTTTCTCTGATCCCCACCTAGGAGGA
i colAng1.NW_012115411v1       I 31 I 5
s calJac3.chrY                     29598 42 +   2853901 GGTAAGACTCGGCCAGTTTTTCTCTCA-CCCCATCTAGGAGGA
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=325734.000000
s hg38.chrX_KI270880v1_alt         46415 145 +    284869 ACAGAGGCCGCCTCCGTGACCTGGGGCAGAGCAGGCTTCCCGCAGTAGCTGCCGACTGAGTGCTCCTTCAGCACAGCTTTACCT-AAGGGCACACCCCTTCCCTGTGATTCAGAACGTGACCTCTGTGTCCTGGGGCAGGAGGTCC
s panTro5.chrX                    170145 146 + 155549662 ACAGAGGCCGCCTCCGTAACCTGGGGCAGAGCAGGCTCCCCGCAGGAGGTGCTGACTGAGTGCTCCTTCAGCACAGCTTTACCTGAAGGGCACACCCCTTCCCTGTGATTCAGAACGTGACCTCTGTGTCCTGGGGCAGGAGGTCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117211 120 +    417917 ACAGAGGCCGCCTCCGTAACCTGGGGCAGAGCAGGCTTCCCGCAGTAGCTG--------------------------TTTACCTGAAGGGCACACCCCTTCCCTGTGATTCAGAATGTGACCTCTGTGTCCTGGGGCAGGAGGTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33568 146 + 141252148 ACAGAGGCCGCCTCCGTGACCTGGGGCAGAGCAGGCTCCCCGCAGTAGGTGCCAACTGAGTGTTCCTTCAGCACAGCTTTACCTGAAGGGCACACCCCTTCCCTGTGATTCAGAACATGACCTCTGTGTCCTGGGGCAGGAGGTCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105099 130 + 149150640 -AGGAGGCCGCCTCCGTGACCTGGGGCGGAGCAGGCTTCCCGCAGCAGGTGCCGACCGAGCGCTCCTTCAGCAGAGCTTTACCT--------------TCCCGTGTGATTCAGAACGTGAGCTCTGTG-CCTGCGGCAGGAGGTCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          159589 130 +  25972781 -AGGAGGCCGCCTCCGTGACCTGGGGCGGAGCAGGCTTCCCGCAGCAGGTGCCGACCAAGCGCTCCTTCAGCAGAGCTTTACCT--------------TCCCGTGTGATTCAGAACGTGAGCTCTGTG-CCTGGGGCAGGAGGTCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112220 130 -   1025902 -AGGGGGCCGCCTCCGTGACCTGGGGCGGAGCAGGCTTCCCGCAGCAGGTGCCGACCGAGCGCTGCTTCCGCAGAGCTTTACCT--------------TCCCGTGTGATTCAGAATGTGAGCTCTGTG-CCTGGGGCAGGAGGTCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98577 130 -    811265 -AGGAGGCCGCCTCCGTGACCTGGGGCGGAGCAGGCTTCCCGCAGCAGCTGCCGACCGAGCGCTGCTTCCGCAGAGCTTTACCT--------------TCCCGTGTGATTCAGAACGTGAGCTCTGCG-CCTGGGGCAGGAGGTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29640 144 +   2853901 GCAGGGACCGCCTCCGTGACGTGGCGCACAGCAGGCT-CCCGCAGTGGGCGCCGACTGGATGCTCGTTCCGCACAGCTTTACCTGACGGGCACACCG-TTCCCCGTGATTCAGAACGTGACCTCAGTGAGCGGGGGTGGGAGGTCC
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507   0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180525   5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=33589.000000
s hg38.chrX_KI270880v1_alt         46560 13 +    284869 CTGCATCTCCCCG
s panTro5.chrX                    170291 13 + 155549662 CTGCATCTCCCCG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117331 13 +    417917 CTGCATCTCCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33714 13 + 141252148 CTGCATCTCCCCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105229 13 + 149150640 CTGCACCTCCCCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          159719 13 +  25972781 CTGCACCTCCCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112350 13 -   1025902 CTGCACCTCCCCG
i cerAty1.NW_012001098v1       C 0 I 454
s chlSab2.chrUn_KE147541v1         98707 13 -    811265 CTGCATCTCCCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     29784  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=2800.000000
s hg38.chrX_KI270880v1_alt         46573 2 +    284869 AG
s panTro5.chrX                    170304 2 + 155549662 AG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117344 2 +    417917 AG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33727 2 + 141252148 AG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105242 2 + 149150640 AG
i rheMac8.chrX                 C 0 I 118
s macNem1.NW_012017243v1          159732 2 +  25972781 GG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         98720 2 -    811265 GG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     29784 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=3845.000000
s hg38.chrX_KI270880v1_alt         46575 3 +    284869 CCC
s panTro5.chrX                    170306 3 + 155549662 TCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117346 3 +    417917 CCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33729 3 + 141252148 CCC
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          159734 3 +  25972781 CCC
i macNem1.NW_012017243v1       C 0 I 420
s chlSab2.chrUn_KE147541v1         98722 3 -    811265 CCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     29784 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=670.000000
s hg38.chrX_KI270880v1_alt         46578 3 +    284869 GCG
s panTro5.chrX                    170309 3 + 155549662 ACC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117349 3 +    417917 GTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33732 3 + 141252148 GCA
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1         98725 3 -    811265 GCG
i chlSab2.chrUn_KE147541v1     C 0 I 300
e calJac3.chrY                     29784 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=9375.000000
s hg38.chrX_KI270880v1_alt         46581 17 +    284869 ATCCCACAGTGCATCTC
s panTro5.chrX                    170312 17 + 155549662 ATCCCACAGTGCATCTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117352 17 +    417917 ATCCCACAGTGCATCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33735 17 + 141252148 ATCCCACAATGCATCTC
i nomLeu3.chrX                 C 0 C 0
e calJac3.chrY                     29784  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=3051.000000
s hg38.chrX_KI270880v1_alt         46598 13 +    284869 CCCGAGCCCATGA
s panTro5.chrX                    170329 13 + 155549662 CCCGAGCCCGCGA
i panTro5.chrX                 C 0 C 0
s nomLeu3.chrX                     33752 13 + 141252148 CCCGAGCCCACAA
i nomLeu3.chrX                 C 0 C 0
e calJac3.chrY                     29784  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=16810.000000
s hg38.chrX_KI270880v1_alt         46611 338 +    284869 TCCCGCAGTGCATCTCCCCGAGCCCACGATCCCGCAGTGCATCTCCCCGAGCCCACCATCCCACAGTGCATCTCCCCGAGCCCACCATCCCGCAGTGCATCTCTCCGAGCCCACCATCCCACAGTGCATCTCCCCGAGCCC----GCAATCCCACAGTGCATCTCCCCGAGCCCGCGATCCCACAATGCATCTCCCCGAGCCCACCATCCCACAATGCATCTCCCCGAGCCCAGCATCCCACAATGCATCTCCCCGAGCCCGCGATCCCGCAGTGCATCTCCCCGAGCCCGCGATCCCGCAGTGCATCTCCATGAGTCCACGATCCCACAATGCATCTCCCC
s panTro5.chrX                    170342 274 + 155549662 TCCCACAATGCATCTCCCCGTGCCCACGATCCCACAATGGATCTCCCCGAGCCCACGATCCCACAGTGCATCTCCCCGAGCCCACAATCCCACAGTC--TCTCCCCGAGCCCACAATCCCACA-TGCATCTCCCCGAGCCCAAACGCATTCCCGCAGTGCATCTCCCCGAGC--ACGATCCCACAGTGCATCTCCCCGAGCCCGTGATCC-ACAAT------------------------------CATCTCCCCGTGCCCACGAT-CCGCAGTGTATCTCCCCGAG-------------------------------CACGATGCCACAGTGCATCTCCCC
i panTro5.chrX                 C 0 I 59
e calJac3.chrY                     29784   0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507   0 +    465904 C
e nomLeu3.chrX                     33765   0 + 141252148 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525   5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=0.000000
s hg38.chrX_KI270880v1_alt         46949 16 +    284869 GTGCCCGCAATCCCAC
e calJac3.chrY                     29784  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e nomLeu3.chrX                     33765  0 + 141252148 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e panTro5.chrX                    170616 59 + 155549662 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=4806.000000
s hg38.chrX_KI270880v1_alt         46965 81 +    284869 AATGCATCTCCCCGAGCCCACCATCCCACAGT-CATCTCCCTGTGCCCACCATCCCACAATGCATCTCCCCAAGCCCGCGAT
s panTro5.chrX                    170675 78 + 155549662 AGTGCATCTCCCCGAGCCCAC-ATCCCGCAGTGCATCTCCCCGAGCCCGCGATCCCACAGTGCATCTCCC---GGCCGCGAT
i panTro5.chrX                 I 59 C 0
e calJac3.chrY                     29784  0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e nomLeu3.chrX                     33765  0 + 141252148 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e cerAty1.NW_012001098v1          112363 454 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=2046.000000
s hg38.chrX_KI270880v1_alt         47046 7 +    284869 CCCACAG
s panTro5.chrX                    170753 7 + 155549662 CCCACAG
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          112817 7 -   1025902 CCCACAG
i cerAty1.NW_012001098v1       I 454 C 0
e calJac3.chrY                     29784 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e otoGar3.GL873584                 87232 7737 +  11138919 I
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=180.000000
s hg38.chrX_KI270880v1_alt         47053 1 +    284869 T
s panTro5.chrX                    170760 1 + 155549662 T
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          112824 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584                 94969 1 +  11138919 T
i otoGar3.GL873584             I 7737 C 0
e calJac3.chrY                     29784 0 +   2853901 C
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=3911.000000
s hg38.chrX_KI270880v1_alt         47054 7 +    284869 GCATCTT
s panTro5.chrX                    170761 7 + 155549662 GCATCTC
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          112825 7 -   1025902 GCACCTC
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     29784 7 +   2853901 GTGTCTC
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                 94970 7 +  11138919 GTATTTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          117369 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=27558.000000
s hg38.chrX_KI270880v1_alt         47061 34 +    284869 CCCGAGCCCACAACGCATTCCCGCAGCGGCGCCT
s panTro5.chrX                    170768 34 + 155549662 CCCGAGCCCACAACGCACTCCCGCAGCGGCACCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117369 34 +    417917 CCCGAGCCCACAACGCATTCCCACAGCAGCATCT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          112832 34 -   1025902 CCCGGGCCCACGACGTGTCCCCACAGCGGCGTCT
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     29791 34 +   2853901 CCCGAATCCACCATGCGTCCCCGCAGCAGCACCC
i calJac3.chrY                 C 0 I 1
s otoGar3.GL873584                 94977 34 +  11138919 TCCCAGTCTACAATGCATCCCCCTCAGGGCTCTA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e nomLeu3.chrX                     33765  0 + 141252148 C
e chlSab2.chrUn_KE147541v1         98728 300 -    811265 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=11620.000000
s hg38.chrX_KI270880v1_alt         47095 9 +    284869 TCCCGTCTC
s panTro5.chrX                    170802 9 + 155549662 TCCAGTCTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117403 9 +    417917 TCCCGTCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          112866 9 -   1025902 TCCCGTCTC
i cerAty1.NW_012001098v1       C 0 I 19
s chlSab2.chrUn_KE147541v1         99028 9 -    811265 TCCCGCCTC
i chlSab2.chrUn_KE147541v1     I 300 C 0
s calJac3.chrY                     29826 9 +   2853901 CCTCGTGTC
i calJac3.chrY                 I 1 C 0
s otoGar3.GL873584                 95011 9 +  11138919 CCCCCTCTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=1130.000000
s hg38.chrX_KI270880v1_alt         47104 2 +    284869 TC
s panTro5.chrX                    170811 2 + 155549662 TC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117412 2 +    417917 TC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99037 2 -    811265 CC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29835 2 +   2853901 TG
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                 95020 2 +  11138919 TC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e cebCap1.NW_016107987v1          200947 256 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e cerAty1.NW_012001098v1          112875 19 -   1025902 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=4392.000000
s hg38.chrX_KI270880v1_alt         47106 5 +    284869 -GCTGT
s panTro5.chrX                    170813 5 + 155549662 -GCTGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117414 5 +    417917 -GCTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99039 5 -    811265 -GCAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29837 5 +   2853901 -GCTAC
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201203 5 -    735872 -GCTGC
i cebCap1.NW_016107987v1       I 256 C 0
s otoGar3.GL873584                 95022 6 +  11138919 TTCTGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507 0 +    465904 C
e nomLeu3.chrX                     33765 0 + 141252148 C
e cerAty1.NW_012001098v1          112875 19 -   1025902 I
e colAng1.NW_012115411v1          180525 5 +   1230721 I
e rheMac8.chrX                    105244 118 + 149150640 I
e macNem1.NW_012017243v1          159737 420 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=34283.000000
s hg38.chrX_KI270880v1_alt         47111 11 +    284869 GGGGG-TCCCAC
s panTro5.chrX                    170818 12 + 155549662 GGGGGGTCCCAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117419 11 +    417917 GGGGG-TCCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    105362 11 + 149150640 GGGGG-CCCCAC
i rheMac8.chrX                 I 118 C 0
s macNem1.NW_012017243v1          160157 11 +  25972781 GGGGG-CCCCAC
i macNem1.NW_012017243v1       I 420 C 0
s cerAty1.NW_012001098v1          112894 11 -   1025902 GGGGG-CCCCAC
i cerAty1.NW_012001098v1       I 19 C 0
s chlSab2.chrUn_KE147541v1         99044 11 -    811265 GGGGG-CCCCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29842 10 +   2853901 -GAGG-TCCCGC
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201208 11 -    735872 GGAGG-TCCCAC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 95028 11 +  11138919 GAGGG-CCCCAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e nomLeu3.chrX                     33765  0 + 141252148 C
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=67906.000000
s hg38.chrX_KI270880v1_alt         47122 22 +    284869 TGTGGAGCCTGCGGCTCTTCCT---
s panTro5.chrX                    170830 22 + 155549662 TGTGGAGCCTGTGGCTCTTCCC---
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117430 22 +    417917 TGTGGAGCCTGCGGCTCTTCCC---
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33765 22 + 141252148 TGAGGAGCCTGCGGCTCTTCCC---
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105373 21 + 149150640 CGTGGAGCCTGCGGCTCTTCC----
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160168 21 +  25972781 TGTGGAGCCTGCGGCTCTTCC----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112905 21 -   1025902 TGTGGAGCCTGCGGCTCTTCC----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99055 21 -    811265 TGTGGAGCCTGCGGCTCTTCC----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29852 22 +   2853901 TGTGGAGCCTGCAGCTCTTCCC---
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201219 22 -    735872 CGTGGAGCCTTCAGCTCTTCCC---
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 95039 22 +  11138919 AGTTAACTCTT---CTCTTTCTTAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           10904 3499 -    350446 M
e saiBol1.JH378345                128507  0 +    465904 C
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=196704.000000
s hg38.chrX_KI270880v1_alt         47144 46 +    284869 -CCTTCAT-----CACGCTGGGTTCACACAGCTCTGCTATTTGGGGTACGGA
s panTro5.chrX                    170852 46 + 155549662 -CCTTCAT-----CACGCTGGGTTCACACAGCTCTGCTATTTGGGGTACGGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117452 46 +    417917 -CCTTCAT-----CACGCTGGGTTCACACAGCTCTGCTATTTGGGGTACGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33787 46 + 141252148 -CCTTCAT-----CACGCTGGGTTCCCACAGCTCTGCTATGTGGGGTACGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105394 46 + 149150640 -CCTCCAT-----CACGCTGGGTTCACACCGCTCTGCTATCTGGGGTACGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160189 46 +  25972781 -CCTCCAT-----CACGCTGGGTTCACACCGCTCTGCTATTTGGGGTGCAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          112926 46 -   1025902 -CCTCCAT-----CACGCTGGGTTCACACCGCTCTGCTATTTGGGGTGCGGA
i cerAty1.NW_012001098v1       C 0 I 599
s chlSab2.chrUn_KE147541v1         99076 46 -    811265 -CCTCCAT-----CACGCCGGGTTCCCACCGCTCTGCTATTTGGGGTACGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14537 46 -    350446 -CCTCCAT-----CACGCTGGGTTCACACCGCTCTGCTATTTGGGGTGCGGA
i manLeu1.NW_012108508v1       M 3499 I 3
s calJac3.chrY                     29874 46 +   2853901 -CCTTCAC-----AACGCTGGGTTCGCACAGCTCTGCGGTTTGGGTTCTGGA
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201241 46 -    735872 -CCTTCAC-----AACGCTGCGTCCACACAGCTCTGCTGTTTGGGTTATGGA
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 95061 52 +  11138919 CCCTCCCTGCAGAAAAGCCAGGTAGAGATGGCCCTGAAATCAAGTTTTCCAA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                128507  0 +    465904 C
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=39765.000000
s hg38.chrX_KI270880v1_alt         47190 27 +    284869 ACTGACCCCGCGAA-----TATTCTGCAGTGA
s panTro5.chrX                    170898 27 + 155549662 ACTGACCCCGCGAA-----TATTCTGCAGTGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117498 27 +    417917 ACTGACCCCGCGAA-----TATTCTGCAGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33833 27 + 141252148 ATTGACCCCACGAA-----TATTCTGCAATGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105440 27 + 149150640 ACTGACCCCGCGAA-----TATTCTGCAGCGG
i rheMac8.chrX                 C 0 I 2
s macNem1.NW_012017243v1          160235  1 +  25972781 -------------------------------G
i macNem1.NW_012017243v1       C 0 I 2
s chlSab2.chrUn_KE147541v1         99122 27 -    811265 ACTGACGCCGCGAG-----TATTCTGCAGCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     29920 27 +   2853901 ATTGGCCCTGTGGC-----TATTCCGCAGTGG
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201287 27 -    735872 ACTGGCCCTGTGGC-----TATCCCGCAATGC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 95113 32 +  11138919 CTTTACTCAGGGAAAGCTCAATTCTGACATGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           14583  3 -    350446 I
e saiBol1.JH378345                128507  0 +    465904 C
e cerAty1.NW_012001098v1          112972 599 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=145361.000000
s hg38.chrX_KI270880v1_alt         47217 46 +    284869 GCTCT-CGGGCTCCTGTGTTTGGCAATATAGCAA-TGACCTGGGTACA
s panTro5.chrX                    170925 47 + 155549662 GCTCT-CGGGCTCCTGTGTTTGGCAATATAGCAAATGACCTGGGTACA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117525 46 +    417917 GCTCT-CGGGCTCCTGTGTTTGGCAATATAGCAA-TGACCTGGGTACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33860 46 + 141252148 GCTCT-CAGGCTCCTGTGTTTGGCAATATTCCAA-CGACCTGGGCACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105469 46 + 149150640 GCTCT-CGGGCTCCCGATTTTGGCAACAGAATGA-TGACCTGGACACA
i rheMac8.chrX                 I 2 C 0
s macNem1.NW_012017243v1          160238 46 +  25972781 GCTCT-CGGGCTCCTGATTTTGGCAATACAATGA-TGACCTGGACACA
i macNem1.NW_012017243v1       I 2 C 0
s chlSab2.chrUn_KE147541v1         99149 46 -    811265 GCTCT-CGGGCTCCTGATTGTGGCAATAGAATGA-TGACCAGGGCACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14586 46 -    350446 GCTCT-CGGGCTCCTGATTTTGGCAATACAATGA-TGACCTGGACACA
i manLeu1.NW_012108508v1       I 3 C 0
s calJac3.chrY                     29947 43 +   2853901 GCTCT-CAGGCTCCTGCTTTTGCCAATATA---A-TGACCTGGGCACA
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201314 43 -    735872 GCTCT-CGGGCTCCTGGTTTTGCCAATATA---A-TGACCTGGGCACA
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 95145 44 +  11138919 GCTTTAAAGGCCACCATTTTTGGCAGGATA---G-TGACCCAGGCATC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                128507  0 +    465904 C
e cerAty1.NW_012001098v1          112972 599 -   1025902 I
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=162073.000000
s hg38.chrX_KI270880v1_alt         47263 46 +    284869 ----CAAACCAACCTTCCTGATG-AAAACTGCCAAGAACCCTGGACAGAAT---------
s panTro5.chrX                    170972 46 + 155549662 ----CAAACCAACCTTCCTGCTG-AAAACTGCCAAGAACCCTGGACAGAGT---------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117571 46 +    417917 ----CAAACCAACCTTCCTGCTG-AAAACTGCCAAGAACCCTGGACAGAAT---------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33906 45 + 141252148 -----AAACCAACCTTCCTGGTG-AAAACTGCCAAGAACCCTGGACAGAAT---------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105515 46 + 149150640 ----CAAACCAACCTCCCTGCTG-GAAACCGCCAGGAACCCCGGACGGTGT---------
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160284 47 +  25972781 ----CAAACCAACCTCCCTGCTGAAAAACCGCCAGGAACCCCGGACGGTGT---------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912632 46 +   1025902 ----CAAACCAACCTCCCTGCTG-GAAACCGCCAGGAACCCTGGACGGTGT---------
i cerAty1.NW_012001098v1       n 599 C 0
s chlSab2.chrUn_KE147541v1         99195 46 -    811265 ----CAAACCAAGCTCCCTACTG-AAAACCGCCAGGAACCCTGCACGGTGT---------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14632 47 -    350446 ----CACACCAACCTCCCTGCTGAAAAACCGCCAGGAACCCCGGACGGTGT---------
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     29990 46 +   2853901 ----CCAACCAACCCTCTTGCTG-AAAACTGACAAGAATACTGGACAGAAC---------
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          201357 46 -    735872 ----GCGACCAACCCTCTTGCTG-AAAACTAACAAGAACACTGGACAGAAT---------
i cebCap1.NW_016107987v1       C 0 I 469
s otoGar3.GL873584                 95189 58 +  11138919 CAGACTGCCCAAACTTGCAGCTG-AAGACCA-TAAAATTATCAGACAGCGTATTATTATT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                128507  0 +    465904 C
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=166341.000000
s hg38.chrX_KI270880v1_alt         47309 48 +    284869 AGTTGACAAACGTCTTCTAGA---CGGCGCCCACAGGCTGGCAGGAAAGGA
s panTro5.chrX                    171018 48 + 155549662 AGTTGACAAACGTCTTCTAGA---CGGCGCCCACAGGCTGGCAGGAAAGGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117617 48 +    417917 AGTTGACAAACGTCTTCTAGA---CGGCGCCCACAGGCTGGCAGGAAAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33951 48 + 141252148 AGTTCACAAACGTCTTCTAGA---CGGCGCCCACAGGCTGGCAGAAAAGAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105561 47 + 149150640 GTTTCACAAGCGTCTTCCAGA---CGGCA-CCCCAGGCTGGCCGGAAAGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160331 47 +  25972781 GTTTCACAAACGTCTTCCAGA---CGGCA-CCCCAGGCTGGCAGGAAAGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912678 48 +   1025902 GTTTCACAAACGTCTTCCAGA---CGGCACCCCCAGGCTGGCAGGAGAGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99241 48 -    811265 GTTTCACAAGCGTCTTCCAGA---CGGCACCCCCAGGCTGGCAGGAGAGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14679 48 -    350446 GTTTCACAAACGTCTTCCAGA---CGGCACCCCCAGGCTGGCAGGAGAGGA
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     30036 51 +   2853901 GTTCCACAGACGTCTTCCAGAAAGCAGCATCCGCAGGCTGGCAGGAGGGTA
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                 95247 45 +  11138919 ATTATACAGGCATCTCCTAGA------GATCTGTATGCTGGCAGGAAGGTA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201403 469 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e colAng1.NW_012115411v1          180525  5 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=91645.000000
s hg38.chrX_KI270880v1_alt         47357 27 +    284869 -GGACACCTCAGGCCACAG----CTGCCTGGA
s panTro5.chrX                    171066 27 + 155549662 -GGACACCTCAGGCCACAG----CTGCCTGGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117665 27 +    417917 -GGACACCTCAGGCCACAG----CTGCCCGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     33999  8 + 141252148 -TGACA-----------------------GGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105608 27 + 149150640 -GGACGCCTCAGGCCACGG----CTGCCTGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160378 27 +  25972781 -GGACACCTCAGGCCACGG----CTGCCTGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912726 27 +   1025902 -GGACGCCTCAGGCCACGG----TTGCGTGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99289 27 -    811265 -GGACACCTCAGGCCACGG----CTGCCTGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14727 27 -    350446 -GGACGCCTCAGGCCACGG----CTGCCTGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180530 27 +   1230721 -GGACATCTCAGGCCACGG----CTGCCTGGA
i colAng1.NW_012115411v1       I 5 C 0
s calJac3.chrY                     30087 31 +   2853901 -CAGTATGTCAGGCCACAGGTGCCTGCCTgaa
i calJac3.chrY                 C 0 I 2012
s otoGar3.GL873584                 95292 28 +  11138919 GGAAGATCTGCAGCCACAG----ATGCCTGGC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201403 469 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=53591.000000
s hg38.chrX_KI270880v1_alt         47384 12 +    284869 AGGAAGAACCCG
s panTro5.chrX                    171093 12 + 155549662 AGGAGGAACCCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117692 12 +    417917 AGGAAGAACCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34007 12 + 141252148 AGGAGGAACCCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105635 12 + 149150640 AGGAGCAGCCCA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160405 12 +  25972781 AGGAGCAGCCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912753 12 +   1025902 AGGAGGAGCCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99316  9 -    811265 ---AGGAGCCCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14754 12 -    350446 AGGAGGAGCCCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180557 12 +   1230721 AGGAGGGACCCA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32130 12 +   2853901 AGGAGGGATCCA
i calJac3.chrY                 I 2012 C 0
s otoGar3.GL873584                 95320 12 +  11138919 AGGAGGAACCCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201403 469 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=296389.000000
s hg38.chrX_KI270880v1_alt         47396 72 +    284869 GGGAAGCCCGTGGAGCCTGAACAGGCTCTGCCTTCAGAAGCGTGGG--CCGAGCGGGCTCACCCGAAATCTCTC
s panTro5.chrX                    171105 72 + 155549662 GGGAAGGTCGTGGAGCCTGAACAGGCTCTGCCTTCAGAAGCGTGGG--CCGAGCGGGCTCACCCGAAATCTCTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          117704 54 +    417917 GGGAAGCCCGTGGAGCCTGAA----CTCTGCCTTC----------------AGCGGGCTCACCCGAAATCTCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34019 72 + 141252148 GGAAAGCCCGTGGAGCCTGAACAGGCTCTGCCTTCAGAAGCGTGGG--CCGAGCGGGCTCACCCGAAATCTCTC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105647 71 + 149150640 GGGAAGGCCGTGGAGCCTGAACAGGCTCTGCCTGCAGAAGCGTGGG--CCGAGCGCGCTCACCCGAAATCGCT-
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160417 71 +  25972781 GGGAAGGCCGTGGAGCCTGAACAGGCTCTGCCTGCAGAAGCGTGGG--CCGAGCGCGCTCACCCGAAATCGCT-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912765 71 +   1025902 GGGTAGCCCGTGGAGCCTGAACAGGCTCTGCCTGCAGAAGCGTGGG--CCGAGCGCGCTCACCCGAAATCTCT-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99325 71 -    811265 GGGAAGCCCGTGGAGCCGGAACAGGCTCTGCCTGCAGAAGCGTGGG--CCGAGCGCGCTCACCCGAAATCTCT-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14766 71 -    350446 GGGAAGCCCGTGGAGCCTGAACAGGCTCTGCCTGCAGAAGCGTGGG--CCGAGCGCGCTCACCCGAAATCTCT-
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180569 71 +   1230721 GGGAAGCCCGGGGAGCCGGAACAGGCTCTGCCTGCAGAAGCGCGGG--CCCAGCGGGCTCACCCGAAATCTCT-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32142 59 +   2853901 GGCAAGCCCACTGACCCTGCACAGGCTCAGCCTTCAGAAGTGT-------------GCAC-CCCGAAATCTGT-
i calJac3.chrY                 C 0 I 1
s cebCap1.NW_016107987v1          201872 70 -    735872 GGGAAGCCCATGGACCCTGTACAGGCTCTGCCTTCAGATGTGTGGA--CCGAGCGGGCTC-CCCGAAATATGT-
i cebCap1.NW_016107987v1       I 469 I 1
s otoGar3.GL873584                 95332 65 +  11138919 GAGAAGCCC-TAAGGCCTAAGAAGGCCATGCCTTTGGGCACATGGATCCCTAACTGGTTC-CCTG---TC----
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                128507  0 +    465904 C
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     83897 6574 +    105888 M

a score=271413.000000
s hg38.chrX_KI270880v1_alt         47468 48 +    284869 ACAGCCTTGCAGAGCTCTGGGGAAGAGGAGGCAAAACGCAGGGTCCTC--------------
s panTro5.chrX                    171177 48 + 155549662 ACAGCCTCGCAGAACTCTGAGGAAGAACAGGCAAAACACAGGGTCCTC--------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90471 48 +    105888 ACAGCCTCGCAGAACTCTGAGGAAGAGGAGGCAAAACGCACGGTCCTC--------------
i panPan2.chrUn_NW_014024225v1 M 6574 C 0
s gorGor5.CYUI01015925v1          117758 48 +    417917 ACAGCCTTGCAGAGCTCTGGGGAAGAGGAGGCAAAACGCAGGGTCCTC--------------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34091 48 + 141252148 ACAGCTTTGTGGAGCTCTGGGGAAGAGGAGGCAAAATGCAGGGTCCTC--------------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105718 47 + 149150640 -CAGTCTTGCAGGGCTCTGGGGAAGACGAGGCAAAACCCAGGGTCCTC--------------
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160488 47 +  25972781 -CAGTCTTGCAGGGCTCTGGGGAAGACGAGGCAAAACCCGGGGTCCTC--------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912836 47 +   1025902 -CCGTCTTGCAGGGTTCTGGGGAAGAGGAGGCCAAACCGAGGGTCCTC--------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99396 47 -    811265 -CAGTCTCGCAGGGCTCTGGGGAAGAGGAGGCAAAGCCCAGGGTCCTC--------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14837 47 -    350446 -CCGTCTTGCAGGGCTCTGGGGAAGAGGAGGCAAAACCGAGGGTCCTC--------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180640 47 +   1230721 -CCGTCGTGCAGGGCTCCGGGGAAGAGGAGGTAGAACGTGGGGTCCTC--------------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32202 48 +   2853901 ACAGCCTTGCAGAGCTCTGGGGACTAGGAGGTAAAACCCAGGGTCCTC--------------
i calJac3.chrY                 I 1 C 0
s cebCap1.NW_016107987v1          201943 48 -    735872 ACAGCCTTGCAGAGCTCTGGGGAATAGGAGGTAAAACCCAGGGTCCTC--------------
i cebCap1.NW_016107987v1       I 1 I 1755
s otoGar3.GL873584                 95397 54 +  11138919 ACAGCCT-GCACAGCTC-------AAGGAGGCAGTTTCCAGGGCCCTTGAAGGGAGCTGCCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                128507  0 +    465904 C
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=33758.000000
s hg38.chrX_KI270880v1_alt         47516 6 +    284869 CGGGGA
s panTro5.chrX                    171225 6 + 155549662 CGGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90519 6 +    105888 CGGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          117806 6 +    417917 CGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34139 6 + 141252148 CGGGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105765 6 + 149150640 GGGGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160535 6 +  25972781 GGGGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          912883 6 +   1025902 CGGGGA
i cerAty1.NW_012001098v1       C 0 n 0
s chlSab2.chrUn_KE147541v1         99443 6 -    811265 CGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14884 6 -    350446 CGGGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180687 6 +   1230721 CGGGGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32250 6 +   2853901 GGAGGA
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                 95451 6 +  11138919 CATGGA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=11704.000000
s hg38.chrX_KI270880v1_alt         47522 3 +    284869 -AGC
s panTro5.chrX                    171231 3 + 155549662 -AGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90525 3 +    105888 -AGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          117812 3 +    417917 -AGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34145 3 + 141252148 -AGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105771 3 + 149150640 -AGC
i rheMac8.chrX                 C 0 I 15
s macNem1.NW_012017243v1          160541 3 +  25972781 -AGC
i macNem1.NW_012017243v1       C 0 I 15
s chlSab2.chrUn_KE147541v1         99449 3 -    811265 -AGC
i chlSab2.chrUn_KE147541v1     C 0 I 15
s manLeu1.NW_012108508v1           14890 3 -    350446 -AGC
i manLeu1.NW_012108508v1       C 0 I 23
s colAng1.NW_012115411v1          180693 3 +   1230721 -AGC
i colAng1.NW_012115411v1       C 0 I 15
s calJac3.chrY                     32256 3 +   2853901 -AGC
i calJac3.chrY                 C 0 I 15
s otoGar3.GL873584                 95457 3 +  11138919 GGG-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128507 0 +    465904 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=259987.000000
s hg38.chrX_KI270880v1_alt         47525 86 +    284869 TCCCAGAACGCGTCACCTTCAGTGGGAAGAATGAGCTCCAAGTAAATCCCCAGCGCGCCTCCGGCCCCAGGAAT-----GAAAGTAGCAGC
s panTro5.chrX                    171234 86 + 155549662 TCCCAGAACACATCACCTTCAGTGGGAAGAATGAGCTCCAAGTAAATCCCCAGCGCGCCTCCGGCCCCAGGAAT-----GAAAGATGCAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90528 91 +    105888 TCCCAGAACGCATCACCTTCAGTGGGAAGAATGAGCTCCAAGTAAATCCCCAGCGTGCCTCCGGCCCCAGGAATGAAAGGAAAGTTGCAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          117815 91 +    417917 TCCCAGAACGCGTCACCTTCAGTGGGAAGAATGAGCTCCAAGTAAATCCCCAGCGCGCCTCCAGCCCCAGGAATGAAAGGAAACTTGCAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34148 91 + 141252148 TCCCAGAACGCGTcaccttcagtgggacgaacgagctccaagtaaatccccagcgcgcctccggccccaggaatgaaaggaaagttgcagc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105789 85 + 149150640 GCCCAGAACACGGCACCTGCGGTGGGAAGAA-GAACTCCAAGGACGTCCCCAGCGCGCCTCCGGCCCCGGGAAGCAAAGGA-----TCAGC
i rheMac8.chrX                 I 15 C 0
s macNem1.NW_012017243v1          160559 85 +  25972781 GCCCAGAACACGGCACCTGCGGTGGGAAGAA-GAACTCCAAGGACGTCCCCAGCGCGCCTCCGGCCCCGGGAAGCAAAGGA-----TCAGC
i macNem1.NW_012017243v1       I 15 C 0
s chlSab2.chrUn_KE147541v1         99467 87 -    811265 GCCCAGAACACGGCACCTGCAGTGG---GAA-GAACTCCAAGGACGTCCCCAGCGCGCCTCCGGCCCCAGGAAGCAAAGGGAACTTGCAGC
i chlSab2.chrUn_KE147541v1     I 15 C 0
s colAng1.NW_012115411v1          180711 89 +   1230721 GCCCAGAACACGTCACTT-CAGTGGCAAGAA-GAACTCCAGGGAAATCCCCAGCGCGCCTCCGGCCCCAGGAAGCAAAGGGAAGTTGCAGC
i colAng1.NW_012115411v1       I 15 C 0
s calJac3.chrY                     32274 91 +   2853901 TCCCAGAACGCTCCACCTTCAGTGAGAAGGATGAACTGCCAATAAGACTCCCGCACACCTCAGGCCCCAGGAATGAAGGGAAGACTGTGGC
i calJac3.chrY                 I 15 C 0
s otoGar3.GL873584                 95460 83 +  11138919 TCTCAGAAGCATTCACCTTCAGTGAGAAAAA-----TACCAG-AAGTACTGAACCCACCCCAA--CTTGGGAATAAAAGGAAAGTTGTAGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           14893 23 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=175866.000000
s hg38.chrX_KI270880v1_alt         47611 46 +    284869 CTTCA--------CCTGGAGCTGCTGGTACGA-GCTGGGCAG----GGGGGAGTT---------CTCC
s panTro5.chrX                    171320 46 + 155549662 CTTCA--------CCTGGAGCTTCTGGTACGA-GCTGGGCAG----GGGGGAGTT---------CTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90619 46 +    105888 CTTCA--------CCTGGAGGTGCTGGTATGA-GCTGGGCAG----GGGGGAGTT---------CTCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          117906 46 +    417917 CTTCA--------CCTGGAGCTGCTGGTACGA-GCTGGGCAG----GGGGGAGTT---------CTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34239 46 + 141252148 cttca--------cctggagctgctcgcagga-gctgggcag----gggggagtt---------ctcc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105874 46 + 149150640 CTTCA--------CCTGGAGCTGCCTGTAGGA-GCTGCGCAG----GGCGGAGCT---------CTCC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160644 46 +  25972781 CTTCA--------CCTGGAGCTGCCTGTAGGA-GCTGCGCCG----GGCGGAGCT---------CTCC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99554 46 -    811265 CTTCA--------CCTGGAGCTGCTCGTAGGA-GCTGCGCAG----GGCGGAGTT---------CTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14916 46 -    350446 CTTCA--------CCTGGAGCTGCTCGTAGGA-GCTGGGCAG----GGCGGAGTT---------CTCC
i manLeu1.NW_012108508v1       I 23 C 0
s colAng1.NW_012115411v1          180800 47 +   1230721 CTTCA--------CCTGGGGCTGCTCGTAGGAGGCTGGGCAG----GGCTGAGCT---------CTCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32365 45 +   2853901 CTCTG--------CCTGGAGCTGCAGGTGGCA-GCCGGGCAG----GGTGCAATT---------CTC-
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                 95543 66 +  11138919 CTCCAACATGCTGCCTGGAGGAGCTAGGGAGA-ACAGGCCAGGCTTGGGAGAGCTGGCTGGGGCCTc-
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128507  0 +    465904 C
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=404292.000000
s hg38.chrX_KI270880v1_alt         47657 87 +    284869 CCCGAGAACTGACGGCTACAGCCGACTCTCCTGCAGGTTTGCAAACCAAACTCACGGTCACCAGGATGCTGCGAAAACCCTCAAACC
s panTro5.chrX                    171366 86 + 155549662 CCCGAGAACTGACGGCTACAGCCGACTCTCCTGCAGGTTTGCAAACCAAACTCAC-GTCACCAGGATGATGCaaaaaccctcaaacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90665 86 +    105888 CCCGAGAACTGACGGCTACAGCCGACTCTCCTGCAGGTTTGCAAACCAAACTCAC-ATCACCAGGATGATGCGaaaaccctcaaacc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          117952 86 +    417917 CCCGAGAACTGACGGCTACGGCCGACTCTCCTGCAGGTTTGCAAACCAAACTCAC-GTCACCAGGATGATGCGAAAACCCTCAAACC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34285 86 + 141252148 cctgagaactgacggctacagccgactctcctgcaggtttgcaaaccaaactcat-gtcaccaggatgatgcgaaaactctcaaacc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    105920 86 + 149150640 CCCGAGAACTTACAGCGACAGCCGACTCTCCGGCAGGTTTGCAAACCAAACCTAC-GTCACCAGGATGGTGCGCAAACCCTCAAACC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160690 86 +  25972781 CCGGAGAACTTACAGCGACAGCCGACTCTCCGGCAGGTTTGCAAACCAAACCTAC-GTCACCAGGACGGTGCGCAAACCCTCAAACC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99600 80 -    811265 CCCGAGAACTTACGGCTG----CGACTCTACCGCAGGTTTGCAAAGCAAAC--AA-GTCACCAGGACGGTGCGCAAACCCTCAAACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           14962 86 -    350446 CCCGAGAACTTACAGCGACAGCCGACTCTCCGGCAGGTTTGCAAATCAAACTTAC-GTCACCAGGACGCTGCGCAAACCCTCAAACC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          180847 85 +   1230721 CCCGAGAACTTGCGGCGACGGCCGACTCTCCGGCAGGTTTGCAAACCCCACTTAT-GTCACCAGGATGGTGAG-AAACCCTCACACC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32410 79 +   2853901 CCCGAGGACTTATG------GCCGACTCTCCTGCAGGTTTGCAAATGAAAACGAC-ATCACCACGATGGTGAGAAAACCCTCCCA-C
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128507 84 +    465904 CCCGAGAACTTATGGCTGCAGCCGACTCTGCTGCAGGTTTGCAGATCAGACTCAC-GTCGCCACGGTGGCGAG-AAACCCGCGCA-C
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 95609 85 +  11138919 cctgagaactcacagccacagacaagactcattgaggtttgca-actgaacttat-accacctggatggcccccaaatcctcaagcc
i otoGar3.GL873584             C 0 I 1852
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=26600.000000
s hg38.chrX_KI270880v1_alt         47744  8 +    284869 GGCCG--------ggc
s panTro5.chrX                    171452 16 + 155549662 ggctgggcgcagtggc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90751 16 +    105888 ggccgggcgcagtggc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          118038 16 +    417917 ggccgggcgcagtggc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34371 16 + 141252148 ggccgggcgcagtggc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106006  8 + 149150640 ggccgggc--------
i rheMac8.chrX                 C 0 I 8
s macNem1.NW_012017243v1          160776  8 +  25972781 ggccgggc--------
i macNem1.NW_012017243v1       C 0 I 8
s chlSab2.chrUn_KE147541v1         99680  8 -    811265 gaccgggc--------
i chlSab2.chrUn_KE147541v1     C 0 I 8
s manLeu1.NW_012108508v1           15048  8 -    350446 GGCCGGGC--------
i manLeu1.NW_012108508v1       C 0 I 54
s colAng1.NW_012115411v1          180932  8 +   1230721 ggccgggc--------
i colAng1.NW_012115411v1       C 0 I 8
s calJac3.chrY                     32489 16 +   2853901 ggccggacacactggc
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128591 16 +    465904 Agccgggcacactggc
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=439834.000000
s hg38.chrX_KI270880v1_alt         47752 121 +    284869 tcgtgcctgcaatcctggcgctttgaaaggaggctgaggggga-cagactgtctgagctgaggagttcaagaccagcctgggcaacatggcaaaacttcatctctac---t--aaaaaaaaaaaaaa-
s panTro5.chrX                    171468 120 + 155549662 tcatgcctgcaatcctggtgctttgaaaggaggctgagggggg-cagactgtctgagctgaggagttcaagaccagcctgggcaacatggcaaaacttcatctctac---t--aaaaacaaaaaca--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90767 122 +    105888 tcatgcctgcaatcctggcgctttgaaaggaggctgaggggggacagactgtctgagctgaggagttcaagaccagcctgggcaacatggcaaaacttcatctctac---t--aaaaaacaaaaaAA-
i panPan2.chrUn_NW_014024225v1 C 0 I 18
s gorGor5.CYUI01015925v1          118054 120 +    417917 tcatgcctgcaatcctggcgctttgaaaggaggctgaggggga-cagactgtctgagctgaggagttcaagaccagcctgggcaacatggcaaaacttcatcgctac---t--aaaaaaaaaaaaa--
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34387 120 + 141252148 tcatgcctgcaatcctggcgctttg---ggaggcgagggaggg-caggctgcctgagctgaggagttcgagaccagcctggtcaacatggcaaaagttaatctctaccatt--aaaaaaaaaaaaa--
i nomLeu3.chrX                 C 0 I 1
s rheMac8.chrX                    106022 116 + 149150640 tcgtgcctgcaatcctggcgctttg---ggaggctgagggggg-caggatgcctgagctggggagttcgagaccagtctgggcaacagggcaaaatttcacctttac---t--aaaaaaaaaaaa---
i rheMac8.chrX                 I 8 C 0
s macNem1.NW_012017243v1          160792 113 +  25972781 tcgtgcctgcaatcctggcgctttg---ggaggctgagggggg-caggatgcctgagctgaggagttcgagaccagtctgggcaacacggcaaaatttcacctctac---t-----aaaaaaaaa---
i macNem1.NW_012017243v1       I 8 C 0
s chlSab2.chrUn_KE147541v1         99696 118 -    811265 tcgtgcctgcaatcctggcgctttg---ggaggctgagggggg-caggacgcctgagctgaggagttcgagaccagtctgggcaacatggcaaaacttcctctctac---taaaaaaaaaaaaaa---
i chlSab2.chrUn_KE147541v1     I 8 C 0
s colAng1.NW_012115411v1          180948 118 +   1230721 tcatgccggcaatcctggtgctttg---ggaggctgagggggg-ccggctgcgtgagctgaggagttcgagacccgtctgggcaacatggcaaaacttcacctctac---taaaaaaaaaaaaaa---
i colAng1.NW_012115411v1       I 8 C 0
s calJac3.chrY                     32505 117 +   2853901 tcgtgcctgtaatgctggcactttt---ggaggctgagccggg-caggctgcctgacctcgggagttcgagaccagcgtgggcaacatagcaaaacctcatctctac---t--aaaaaaaaaaaaa--
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                128607 118 +    465904 tcgcgcctgtaatgctggcactctt---ggaggctgaggcggg-cagagtgcctgacctcgggagtccgagaccagcgtgggcaacatagcaaaacctcatgtctac---t--aaaaaaaaaaaaa-a
i saiBol1.JH378345             C 0 I 1745
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          912889   0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=19645.000000
s hg38.chrX_KI270880v1_alt         47873 55 +    284869 caaaaaaaaaaaaacagaaaacaaaaaacaaaaaGAGTATAAAaaaaattagccg
s panTro5.chrX                    171588 54 + 155549662 -aaaacaaaaaaaacagaaaacaaaaaacaaaaaGAGTATCAAAAAAATTAgccg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118174 54 +    417917 -aaAAACAAACGAACAGAAAACAAAAAACAAAAAGAGTATCAAAAAAATGAgccg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     34508 15 + 141252148 ----------------------------------------cgaaaaatttagctg
i nomLeu3.chrX                 I 1 C 0
s rheMac8.chrX                    106138 21 + 149150640 ----------------------------------aaaaatagaaaaaattagctg
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160905 21 +  25972781 ----------------------------------aaaaacagaaaaaattagctg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99814 21 -    811265 ----------------------------------aaaaatagaaaaaattagctg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          181066 21 +   1230721 ----------------------------------aaaaatcgaaaacattagctg
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32622 15 +   2853901 ----------------------------------------aaaaaaaattagcca
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=4270.000000
s hg38.chrX_KI270880v1_alt         47928 4 +    284869 ggtg
s nomLeu3.chrX                     34523 4 + 141252148 agtg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106159 4 + 149150640 ggtt
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160926 4 +  25972781 ggtt
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1         99835 4 -    811265 ggtt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          181087 4 +   1230721 agtt
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32637 4 +   2853901 ggtg
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642 0 + 155549662 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=139600.000000
s hg38.chrX_KI270880v1_alt         47932 138 +    284869 tggtggagggtgcctgtactcccagctactcgggaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagtgagactctgtctc
s nomLeu3.chrX                     34527 128 + 141252148 tggtggcacatgcctgtaaccccagctactcaggaggctgaggcaggagaatcgcttcaacccgggaggcagaggctgcagtgagccgacatagcaccactgaactcc----------acagagcaagagtctgtctc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106163 138 + 149150640 tggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttcaacccaggaggtggagcttgcagtgagctgagatctggccactgtactccagcccgggtgacagagcgagactctgtctt
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          160930 138 +  25972781 tggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttcaacccaggaggtggagctcgcagtgagctgagatctggccactgtactccagcccgggtgacagagcgagactctgtctt
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          181091 138 +   1230721 tggtggcacacgcctgtcatcccagctactcgggaggctgaggcaggagaatcacgtcaacccaggaggtggagcttgcggtgagccgagattgcgccactgcactccagcctgggcaacagagtgagactctgtctc
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     32641 138 +   2853901 tggaagcacacgcctatagtcccagctacccaggaggcggaggtgggaaaatcgctggaacccagggggcggaggtggcagcaagctgagatggcaccacggaactgcagcctgggcaagagagcaagactctgtctc
i calJac3.chrY                 C 0 I 921
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642   0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839   0 -    811265 C
e cerAty1.NW_012001098v1          912889   0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=6604.000000
s hg38.chrX_KI270880v1_alt         48070 9 +    284869 aaaacaaaa
s nomLeu3.chrX                     34655 9 + 141252148 caaaaaaaa
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106301 9 + 149150640 aaaacaaaa
i rheMac8.chrX                 C 0 I 2
s macNem1.NW_012017243v1          161068 9 +  25972781 aaaacaaaa
i macNem1.NW_012017243v1       C 0 I 2
s colAng1.NW_012115411v1          181229 9 +   1230721 aaaacaaaa
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839 0 -    811265 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=-550.000000
s hg38.chrX_KI270880v1_alt         48079 5 +    284869 -caaaC
s nomLeu3.chrX                     34664 5 + 141252148 -aaaac
i nomLeu3.chrX                 C 0 I 539
s macNem1.NW_012017243v1          161079 5 +  25972781 cagaa-
i macNem1.NW_012017243v1       I 2 C 0
s colAng1.NW_012115411v1          181238 5 +   1230721 cagaa-
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839 0 -    811265 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e rheMac8.chrX                    106310 2 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=27122.000000
s hg38.chrX_KI270880v1_alt         48084 125 +    284869 GATTAAccaggtgtggtggcgcatgcctgtactcccagctactcgggaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcc
s macNem1.NW_012017243v1          161084 125 +  25972781 aattaaccaggtgcggtggcgggcacccgtcatcccagctacttgaggggctgaggcaggagaatggcgtgaacccggaaggcggagggtgcggtgagctgagatccggccactgcactccagcc
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          181243 125 +   1230721 aattaaccaggtgtggtggcgcacacctgttatcccagctacttgaggggctgaggcaggagaagggtgtgaacccgggaggcagagggtgcggtgagcggagatccggccactgcactccagcc
i colAng1.NW_012115411v1       C 0 M 380
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e nomLeu3.chrX                     34669 539 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642   0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839   0 -    811265 C
e cerAty1.NW_012001098v1          912889   0 +   1025902 I
e rheMac8.chrX                    106310   2 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=2862.000000
s hg38.chrX_KI270880v1_alt         48209 35 +    284869 tgggcgacagagtgagactctgtctcaaaacaaaa
s macNem1.NW_012017243v1          161209 35 +  25972781 tgggtgacagagcgagactctgtctcaaaaaaaaa
i macNem1.NW_012017243v1       C 0 I 46
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e nomLeu3.chrX                     34669 539 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642  0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839  0 -    811265 C
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310  2 + 149150640 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=0.000000
s hg38.chrX_KI270880v1_alt         48244 1443 +    284869 caaacgattaaccaggtgtggtggcgcatgcctgtaatcccagctactggagaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaaCGATTAAccaggtgtggtggcgcatgcctgtaatcccagctacttgagaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaacgattaaccaggtgtggtggcgcatgcctgtactcccagctactcgagaggctgaggcaggagaatcgcttcaacacaggaggcggagggtgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaaCGATTAAccaggtgtggtggcgcatgcctgtactcccagctactcgagaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaacgattaaccaggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaaCGATTAAccaggtgtggtggcgcatgcctgtaatcccagctactggagaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaacgattaaccaggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttcaacacaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaaCGATTAAccaggtgtggtggcacatgcctgtaatcccagctacttgagaggctgaggcaggagaatcgcttcaacacaggaggcagaggttgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaacaaacgattaaccaggtgtggtggcgcatgcctgtactcccagctactcgagaggctgaggcaggagaatcgcttcaacacaggaggcggagggtgcagtgagctgagatcgcactactgcac
e calJac3.chrY                     32779  921 +   2853901 I
e manLeu1.NW_012108508v1           15056   54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                128725 1745 +    465904 I
e nomLeu3.chrX                     34669  539 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642    0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839    0 -    811265 C
e cerAty1.NW_012001098v1          912889    0 +   1025902 I
e colAng1.NW_012115411v1          181368  380 +   1230721 M
e rheMac8.chrX                    106310    2 + 149150640 I
e macNem1.NW_012017243v1          161244   46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228    0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889   18 +    105888 I

a score=9256.000000
s hg38.chrX_KI270880v1_alt         49687 199 +    284869 tccagcctgggcgacagagtgagactctgtctcaa--aacaaaacaaaCGATTAAccaggtgtggtggagggtgcctgtactcccagctactcgagaggctgaggcaggagaatcgcttcaacacaggaggcggagggtgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctca
s saiBol1.JH378345                130470 194 +    465904 tccagcctgcccaacgtggcgaaaccgtgtttctactgaaaatacagac-atcagccgggcgtggtggtgcgcgcctgtcgcccaagctgctccggaggctgaggcaggagggtcgcttgaactc------cggaggttgcggtgagccgagatcgcgcagttgcaccccagcctgggggacagagtgacgttctgactca
i saiBol1.JH378345             I 1745 C 0
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e nomLeu3.chrX                     34669 539 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642   0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839   0 -    811265 C
e cerAty1.NW_012001098v1          912889   0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310   2 + 149150640 I
e macNem1.NW_012017243v1          161244  46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=-2353.000000
s hg38.chrX_KI270880v1_alt         49886 122 +    284869 ---aaacaaaacaaa---cgattaaccaggtgtggtggagg-----gtgcctgtactcccagctactcgggaggctgaggcaggagaatcgcttcaacacaggaggcagaggttgcagtgagctgagatcgca
s nomLeu3.chrX                     35208 102 + 141252148 ---AACCAAAACGAGGGGTGACCggccaggtgtgg---aggctcacgcacctgtcatcccagcattttaggaggctgaggtgg----atcacttgaggtcaggagttcgaga---------------------
i nomLeu3.chrX                 I 539 C 0
s saiBol1.JH378345                130664  82 +    465904 aaaaaaaaaaaaaaaaaacga--aaaCAGGTGTGA------------------TGTTCAAAGCAGCAAAAAGACGTGCAGCAG--------CTTCTCAACAGAGATCGCA-----------------------
i saiBol1.JH378345             C 0 I 77
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642   0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839   0 -    811265 C
e cerAty1.NW_012001098v1          912889   0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310   2 + 149150640 I
e macNem1.NW_012017243v1          161244  46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228   0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=1339.000000
s hg38.chrX_KI270880v1_alt         50008 60 +    284869 ccactgcactccagcctgggcgacagagtgagactctgtctcaa--aacaaaacaaaCGATT
s nomLeu3.chrX                     35310 51 + 141252148 ----------ccagcctggccaacatggggaaacccagtctctaccaaaaatacaaa-aatt
i nomLeu3.chrX                 C 0 C 0
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                130746 77 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642  0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839  0 -    811265 C
e cerAty1.NW_012001098v1          912889  0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310  2 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228  0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=311.000000
s hg38.chrX_KI270880v1_alt         50068 2 +    284869 AA
s nomLeu3.chrX                     35361 2 + 141252148 ag
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345                130823 2 +    465904 Ag
i saiBol1.JH378345             I 77 C 0
e calJac3.chrY                     32779 921 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839 0 -    811265 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310 2 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=1014.000000
s hg38.chrX_KI270880v1_alt         50070 3 +    284869 cca
s nomLeu3.chrX                     35363 3 + 141252148 ctg
i nomLeu3.chrX                 C 0 C 0
s calJac3.chrY                     33700 3 +   2853901 ccg
i calJac3.chrY                 I 921 C 0
s saiBol1.JH378345                130825 3 +    465904 ccg
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    171642 0 + 155549662 C
e chlSab2.chrUn_KE147541v1         99839 0 -    811265 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310 2 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          118228 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=4898.000000
s hg38.chrX_KI270880v1_alt         50073 4 +    284869 ggtg
s panTro5.chrX                    171642 4 + 155549662 ggtg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118228 4 +    417917 ggtg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35366 4 + 141252148 ggtg
i nomLeu3.chrX                 C 0 C 0
s calJac3.chrY                     33703 4 +   2853901 ggcg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                130828 4 +    465904 ggcg
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e chlSab2.chrUn_KE147541v1         99839 0 -    811265 C
e cerAty1.NW_012001098v1          912889 0 +   1025902 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310 2 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=209075.000000
s hg38.chrX_KI270880v1_alt         50077 147 +    284869 tggtggcgcatgcctgtaatcccagctacttgagaggctgaggcaggagaatcgcttcaacacaggaggcagaggttgcagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaaacaaaa
s panTro5.chrX                    171646 147 + 155549662 tggtggcacatgcctgtactcccagctacttgggaggctgaggcaggagaatcgcttcaacacaggaagcagaggttacagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaagcaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118232 147 +    417917 tggtggcacatgcctgtactcccagctacttgggaggctgaggcaggagaatcgcttcaacacaggaggcagaggttacagtgagctgagatcgcactactgcactccagcctgggcgacagagtgagactctgtctcaaagcaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35370 145 + 141252148 tggtggcgggcgcctgtaatcccagctactcgagaggctgaggaaagagaatggcgtgaacccaggagacagaggttgcagtgagctgagatggcaccactgcactccagcctgggcgacacagttaga--ctgtctcaaaacaaaa
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          113571 147 -   1025902 tggtggcacacgcctgtcatcccggctactcgggaggctgaggtaggagaatcacttcaacgcaggaggtggaggttgcagtgagctgagatggtgccactgcactccagcctgggcgacagagcgagactctgtcttaaaacaaaa
i cerAty1.NW_012001098v1       I 599 I 2
s chlSab2.chrUn_KE147541v1         99839 147 -    811265 tggtggcacacgcctgtcatcacagctacttgggaggctgaggcaggagaattgcttcaacccaggaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggcgacagagcgagactctgtcttaaaacaaac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     33707 116 +   2853901 ctgtgcctcacgcctgtcaccccagcaccgtgggaggccgaggagggcggatcacctgaagtcgggagttcaag-------------------------------cccggcctggccaacgcggggaagccgtgtttctactaaaaa
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                130832 116 +    465904 cggtggctcacgcctgtgatcccagcactttgggaggcccatgaggacggatcacctgaggtcaggagttcaag-------------------------------accggcctggccaatatgacaaaaccgtgtctctagtaaaaa
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106310   2 + 149150640 I
e macNem1.NW_012017243v1          161244  46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=424468.000000
s hg38.chrX_KI270880v1_alt         50224 169 +    284869 caa-----acgattaaccaggtgtggtggcgcatgcctgtaatcccagctacttgagaggctgaggcaggagaatcgcttaaacccgggaggcggagggtgcggtgagctgaggtcgcaccactgtcctccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaa--------------G-----------
s panTro5.chrX                    171793 177 + 155549662 caataaaaaaaattaaccaggcatggtggcgggcgcctgtaatcccagctacttgagaggctgaggcaggagaatcgcttaaacccgggaggcggagggtgcagtgagctgaggtcgcaccactgtactccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaa-----------agaG-----------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118379 174 +    417917 caataaaaaaaattaaccaggcatggtggcgggtgcctgtactcccagctacttgagaggctgaggcaggagaatcgcttaaacccgggaggcggaggttgcggtgagctgaggtcgcaccactgtcctccagcctcggtgacagagtgagactctgtctcaaaaaaaaaaaa--------------G-----------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35515 186 + 141252148 cgataaaaaaaattaaccaggcatggtggcggatgcctgtaatctcagctacttgagaggctgaggcaggagaatcgcttaaacccgggaggcggagggtgcagtgagctgagatcgcaccactgcattccagcctgggtgacagagtgaga--ctgtctcaaaaaaaaaaaaaaaaaaaaaaaagaG-----------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106312 169 + 149150640 -----cagaaaattaaccaggtgtggcggcgggcacccgtcatcccagctacttgaggggctgaggcaggagaatcgcttaaacccgggaggcagagggtgcggtgagctgagatcgcgccactgcactccagcccgggtgacagagcgagactccgtctcaaaaaaaaaaaG--------------G-----------
i rheMac8.chrX                 I 2 I 67
s cerAty1.NW_012001098v1          113720 169 -   1025902 -----cagaaaattaaccaggtgtggtggcgggcacccgacatcccagctacttgaggggctgaggcaggagaatcgcttaaacccgggaggcagagggggcggcgagctgacatcgcgccactgcactccagcccgggtgacagagggagactccgtctcaaaaaaaaaaaa--------------g-----------
i cerAty1.NW_012001098v1       I 2 C 0
s chlSab2.chrUn_KE147541v1         99986 169 -    811265 -----cagaaaattaaccaggcgtggtggcgggcacccgtcatcccagctacttgaggggctgaggcaggagaatcgcttaaccccgggaggcggaggttgcagtgagctgagatcgcgccactgcgctccagcccgggtgacagagggagactccgtctcaaaaaaaaaaaa--------------a-----------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     33823 180 +   2853901 ----tacaaaaatcagccgggtgtggtggtcggcacctgtattcgcagctactcgggaggctgaggcgggagaatctcctgaacccaggaggcggaggttgcggtgagccgagatcgcaccac-gcactcctgcctgggcgacaggataagactccgtctcaaaaaaaaaaaa--------------aaaaaaaaaGCA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                130948 171 +    465904 ----tacaaaactcggccgggcgtggtggcgggcgcctgtgatcccagctgctcgggaggctgaggcacgaggatctcttgaacccggaaggcggatgttgcagtgagctgagatcgcaccactgcactccagcctgggcaagagggcgagactccgtctcagaaaaaaaaaa--------------a----------a
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e macNem1.NW_012017243v1          161244  46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=69091.000000
s hg38.chrX_KI270880v1_alt         50393 42 +    284869 TGAGATGAATACTTGgacatttttagccccaaatttacagag
s panTro5.chrX                    171970 42 + 155549662 TGAGACGAATACTTGGACATTTTTAGCCCCAAATTTAGAGAG
i panTro5.chrX                 C 0 I 2
s gorGor5.CYUI01015925v1          118553 42 +    417917 TCAGATGAATACTTGGACAGTTTTAGCCCCAAATTTACAGAG
i gorGor5.CYUI01015925v1       C 0 I 2
s nomLeu3.chrX                     35701 42 + 141252148 TGAGATGAACACTTGgacatttttagccccaaatttacagag
i nomLeu3.chrX                 C 0 I 2
s cerAty1.NW_012001098v1          113889 40 -   1025902 --agaTGAACACGTAGACACGTTTAGACCAGAATGTACAGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100155 42 -    811265 agagaTGAACATGTAGACACGTTTAGACCAGAATGTACAGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     34003 42 +   2853901 TGAGATGAACACGTGGACATTTTTACAGCAAAATTTACAGAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131119 42 +    465904 TGAGATGAACGCTTGGACATTTTTATAGCAAAGGTGACAGAG
i saiBol1.JH378345             C 0 I 18
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106481 67 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=8586.000000
s hg38.chrX_KI270880v1_alt         50435 7 +    284869 --catgcac
s panTro5.chrX                    172014 7 + 155549662 --CATGCAC
i panTro5.chrX                 I 2 C 0
s gorGor5.CYUI01015925v1          118597 7 +    417917 --CATGCAC
i gorGor5.CYUI01015925v1       I 2 C 0
s nomLeu3.chrX                     35745 7 + 141252148 --catgcac
i nomLeu3.chrX                 I 2 C 0
s cerAty1.NW_012001098v1          113929 7 -   1025902 --TATGCAC
i cerAty1.NW_012001098v1       C 0 I 32
s chlSab2.chrUn_KE147541v1        100197 7 -    811265 --TATTCGT
i chlSab2.chrUn_KE147541v1     C 0 I 32
s calJac3.chrY                     34045 9 +   2853901 AAGATGCAC
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                131161 18 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e rheMac8.chrX                    106481 67 + 149150640 I
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=24265.000000
s hg38.chrX_KI270880v1_alt         50442 17 +    284869 -cccattaacagacactc
s panTro5.chrX                    172021 17 + 155549662 -CCCATTAACAGACACTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118604 17 +    417917 -CCCATTAACAGACACTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35752 17 + 141252148 -cccattaacagacactc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106548 17 + 149150640 -GCCGTTAACAGACACCG
i rheMac8.chrX                 I 67 C 0
s cerAty1.NW_012001098v1          113968 17 -   1025902 -GCCGTTAACAGACACCC
i cerAty1.NW_012001098v1       I 32 C 0
s chlSab2.chrUn_KE147541v1        100236 17 -    811265 -GCCGTTAACAGACACCC
i chlSab2.chrUn_KE147541v1     I 32 C 0
s calJac3.chrY                     34054 11 +   2853901 GGCCGT-----AACAC--
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e saiBol1.JH378345                131161 18 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e macNem1.NW_012017243v1          161244 46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=270903.000000
s hg38.chrX_KI270880v1_alt         50459 199 +    284869 tacggggcaaaagctgaggaaatgcagcagggagaagccaagagctcccaaagggaaggttggaattgaaagaagggatgaagagcaggtcag----cggtaatgagtgggaaaacctcggca-gctgaccacataaatcagtgataacaatgtatgttcaatttaaaaaacataaatcagtgaaaACAACGTATGTTCAATTA
s panTro5.chrX                    172038 196 + 155549662 TATGGGGCAAAAGCTGAGGAAACGCAGCAGGGAGAAGCCAAGAGCTCCCAAAGGGAGGGTTGGAATTGAAAG---GGATGAAGAGCAGGTCAG----CGGTAATGAGTGGGAAAACCCCGGCA-GCTGACCACATAAATCAGTGATAACAATGTATGTTCAATTTAAAAAACATAAATCAGTGAAAACAACGTATGTTCAATTT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118621 199 +    417917 TATGAGGCAAAAGCTGAGGAAACACAGCAGGGAGAAGCCAAGAGCTCCCAAAGGGAAGGTTGGAATTGAAAGAAGGGATGAAGGGCAGGTCAG----CGGTAATGAGTGGGAAAACCTCGGCA-GCTGACCACATAAATCAGTGGTAACAATGTATGTTCAATTTAAAAAACATAAATCAGTGAAAACAACGTATGTTCAATTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35769 198 + 141252148 tatggggcaaaagctgaggaaacgcagcagggagaagccaaaagctcccaaagggaaggttggaattgaaagaagggatgaagagcaggtcag----tggtaatgagaaggaaaaccctggca-gctgaccacataaatcagtgataacaatgtatgttcaatttaaaaaacataaatcagtgataacaacgtatgttcaatt-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106565 156 + 149150640 TGTGACGCAAAAGCTGAGCAAAAGCAGCCCGGAGAAGCCAAGAGCTCCCAAAGCGAAGGTCGGAATTGAAAGAAGGGATGAAGGGC------------GGTAACGAGTGGGAAAACCTCGGCACGCTGACCACAGAAATCAGTGATAACAACGTACGTTCAATTCTTA------------------------------------
i rheMac8.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          113985 155 -   1025902 TGTGAGGCAAAAGCTGAGCAAACGCAGCCCGGAGAAGCCAAGAGGTCCCAAAGGGAAGGTCGGAATTGAAAGGAGGGATGCAGAGC------------AGTAACGAGTGGGAAAACCTCGGCACGCTGACCACAGAAATCAGTGATAACAACGTACGTTCAATTCTT-------------------------------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100253 156 -    811265 TGTGAGGCAAAAGCTGAAGAAACGCAGCCCGGAGAAGCCAAGAGCTCCCAAAGGGAAGGTCGGAATTGAAAGAAGGGATGAAGAGC------------GGTAACGAGTGGGAAAACCTCCGCACGCTGACCACAGAAATCAGTGATAACAACGTACGTTCAATTCTTA------------------------------------
i chlSab2.chrUn_KE147541v1     C 0 I 1
s calJac3.chrY                     34065 141 +   2853901 AGTGAAGCAAGAGGTGAGGAGACA-----------AGCCGAGGCCTCCCGAAC---------------GCAGACGGGATGGAGGGCAGAGCAGGTCACAGTGACCACTGGGACAAGCTAGGCAGGCTGACCACCAC--------------AC-CCAGTTCAGTCCTTA--------------AAAGTCTCAGTATG--------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131179 169 +    465904 CGTGAAGCCACAGCTGAGGACACG-----------AGCCTGGGCCTGCCAAACGGAAGGTCGGAATTGGAAGAAGAGACGCACAGCAGAGCGGGTCGCAGTGACCAGTGCGAGGAGCTAAGCAGG-TGACCACAGAAGTCCGAGATGGCGAC-TACGTTCCGTCCTTA--------------AAAATCTCCACATG--------
i saiBol1.JH378345             I 18 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e macNem1.NW_012017243v1          161244  46 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=200708.000000
s hg38.chrX_KI270880v1_alt         50658 83 +    284869 AAAAAAAAAAGTCAATACAACAGC---CTGTCAGTGACATGCTGACTGG-ATGAGTGTGAGACGGTTTGTGAGTTGGAGGAAAAGAT
s panTro5.chrX                    172234 83 + 155549662 AAAAAAAAAACTCAATACAACAGC---CTGTCAGTGACATGGTGACTGG-ATGAGTGTGAGACGGTTTGTGAGTTGGAGGAAAAGAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118820 82 +    417917 -AAAAAAAAACTCAATACAACAGC---CTGTCAGTGACATGGTGACTGG-ATGAGTGTGAGACGGTTTGTGAGTTGGAGGAAAAGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     35967 85 + 141252148 -aaaaaaaaaatcaatacaacaacaggctgtcagtgacatggtgactgg-atgagtgtgagacggtttgtgagttggaagaaaagat
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106721 77 + 149150640 --AAAAAAAACTCAAAACAAC-------TGTCAGTGAAATGGTGACTGG-ATGAGTGTGTGCCTGTTTGTGAGTTGGAGGAAAAGAT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161290 83 +  25972781 AAAAAACAAACTCAAAACAACAGC---GTGTCAGTGAAATGGTGACTGG-ATGAGTGTGTGCCTGTTTGTGAGTTGGAGGAAAAGAT
i macNem1.NW_012017243v1       I 46 C 0
s cerAty1.NW_012001098v1          114140 79 -   1025902 AAAAAAAAAACTCAAGACAACAGC---GTGTCAGTGAAATGGTGACTGG-ATGAGTGTGTGCC----TGTGAGTTGGAGGAAAAGAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100410 74 -    811265 AAAAAAAAGAC-----ACAACAGC---CTGTCAGTGAAATGGTGACTAG-ATGAATGTGTCAC----TGTGACTTGGAGGAAAAGAT
i chlSab2.chrUn_KE147541v1     I 1 C 0
s calJac3.chrY                     34206 68 +   2853901 ----------------ACAACAGC---GTGTCAGTGAAATGGTGACTTGAATGCGTGTGTGACGGACTGTGAGTTGCAGGAAAAGAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131348 68 +    465904 ----------------GCAACAGC---GCACCAGGGAGACGGGGAGTGGAATGTGTGTGTGACGGTTTGGGGGCTGCAGGAGAAGAT
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e colAng1.NW_012115411v1          181368 380 +   1230721 M
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=169225.000000
s hg38.chrX_KI270880v1_alt         50741 57 +    284869 ACTGATTAATATTGGGCTTTGAAAAATTT---AGTCGACGTTCC-----tttttttttt-------ctttat
s panTro5.chrX                    172317 59 + 155549662 ACTGATTAATATTTGGCTTTGAAAAATTT---AGTCGACGTTCC-----tttttttttt--t---tctttaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118902 61 +    417917 ACTGATTAATATTGGGCTTTGAAAAATTT---AGTCGACGTTCC-----TTttttttttttt---tctttaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36052 56 + 141252148 actgattaacattgggctttgaagaattt---agttgacgttcc-----tttttttttt--------tttta
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106798 63 + 149150640 ATTGATTAATATTGGGCTTTGAAATAGTT---AGTTGACATTCC---TTTTttttttttttt---cctttaa
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161373 64 +  25972781 ATTGATTAATATTGGGCTTTGAAATAGTT---AGTTGACGTTCCt--ttttttttttttttt---cctttaa
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          114219 63 -   1025902 TTTGATTAATATTGGGCTTTGAAATAGTT---AGTTGACATTCC---TTTTttttttttttt---cctttaa
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100484 66 -    811265 ATTGATTAATATTGGGCTTTGAAATACTT---AGTTGATATTCC---TTtttttttttttttgtctctttaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          181751 61 +   1230721 ACTGATTAATATTAGGCTTTGAAATATTT---AGTGGACATTCC-----TTttttttttttt---cctttaa
i colAng1.NW_012115411v1       M 380 C 0
s calJac3.chrY                     34274 66 +   2853901 ACTGATCCATGTTGGGCTTGGAAAAGTTTACGACTTGGCATTTTTTCCTTGttttttttttt-----ttta-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131416 68 +    465904 ACTGATCGATGTTGGGCTTTGAAAAATTTACGAGTCGGCATTGCttgcttgctttttttttt---ccccta-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          201991 1755 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=749055.000000
s hg38.chrX_KI270880v1_alt         50798 159 +    284869 agaga-cggggtctcgctatgttgtgctggctggtcttgaactcctggcctccagcgattctcctgcctcagcctcccaaggcgctgggatcacaggtgtgaggcc--ccgtgcccggccAGCCATTGACATTTGTAGGATAAACAGTGAGCTAGTAGGAAG
s panTro5.chrX                    172376 159 + 155549662 agaga-gggggtctcgctatgttgtgctggctggtcttcaactcctggcctccagcgattctcctgcctcagcctcccaaggcgctgggatcacaggtgtgacgcc--ccgtgcccggccAGCCGTTAACATTTGTAGGATAAACAGTGAGCTAGTAGAAAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          118963 159 +    417917 agaga-gggggtctcgctatgttgtgctggctggtcttgaactcctggcctccagcgattctcctgcctcagcctcccaaggcgctgggatcacaggtgtaaggac--ccgtgcccggccAGCCGTTGACATGTGTAGGATAAACAGTGAGCTAGTAGAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36108 159 + 141252148 agaga-cggggtctcgctatgttgccccggctggtcttgaactcctggcctccagcgattctcctgcctcagcctcccaaggcactgggatcacaggtgtaaggcc--ctgagcctggccagccattgacatttgtaggataaacagtgagctagcagaaag
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    106861 158 + 149150640 agagacgggggtctcgccatgttgcccaggctggtcttgaactcctggcctccagcaattctcctgcctcagcctcccaaggcgctgggatcacaggggtgaggca--ccatg-ccggccAGCCGCCGAT-TCTGTGGGATAAACAGTGAGCTCGTAGAAAG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161437 159 +  25972781 agagacgggggtctcgctatgttgcccaggctggtcttgaactcctggcctccagcgattctcctgcctcagcctcccaaggcgctgggatcacaggggtgaggca--ccgtgcccggccAGCCGCCGAT-TCTGTGGGATAAACAGTGAGCTCGTAGAAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          114282 160 -   1025902 agagacgggggtctcgctacgttgcccaggctggtcttgaactgctggcctccagcgattctcctgcctcagcctcccgaggcgctgggatcacaggggtgaggca--ccgtgcccggccAGCCGCCGACATCTGTGGGATAAACAGCGAGCTCGTAGAAAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100550 159 -    811265 agagatgggggtctcgctacgttgcccaggctggtcttgaactcctggcctccagcgattctcctgcctcagcctcccaaggcgctgggatcacaggtgtgaggca--ccgtgccctgccAGCGGCCGAT-TCTGTGGGATAAACAGAGAGCTCGTAGAAAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          181812 162 +   1230721 agagacgggggtctcgctatgttgcccaggctggtctggaactcctggcctccagcgattctccggcctcagcctcccaaggcgcggggatcacaggtgtgaggcaccccgtgcccggccAGCCGCCGCCATCTGTGGGATAAACGGTGAGCTGGTAGAAAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     34340 159 +   2853901 agaca-cggggtctcactatgttgcccaggctggccttgaactcctggcctccagcggttctcctgcctcagcctcccacagtgctggggtcgcaggtgtgaggta--cggcgtccggccAGCAGCTGACATTTGTAGGATAAACGGTGACCTACTAGAAAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131484 146 +    465904 agaga-cggggtctcactatgttgcccaggctggccttgaact-ctggcctccagcggttctcctgcctcagcctcccacagtgctgggatcacacgt--------------gtCCGACCAGCAGCTGACATTTCTGGGATAAACGGTGAGCCACTAGAAGG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          203746 159 -    735872 agaga-cggggtctcactatgttgcccaggctggccttgaactcctggccacctgcggctctcctgcctcagcctcccacagtgctgggatcacaggtgtgaggtt--cagtgtccggccTGCGGCTGACATTTGTAGGGTAAACAGTGAGCTACTAGAAAG
i cebCap1.NW_016107987v1       I 1755 I 663
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=378221.000000
s hg38.chrX_KI270880v1_alt         50957 136 +    284869 CGTGTACTCCAAACGAGAGAAAAGGCGACCAAGCTGAAAAAGAGCAGGAGACAGAGGTGCAGGATGAGACGGTCACAGTC--CATCACACGGATGAGCAGGCAACATCGACCTCaatgcaccgagtgctctagttaca
s panTro5.chrX                    172535 136 + 155549662 CGTGTACTCCAAACGAGAGAAAAGGCGACTGAGCTGAAAAAGAGCGGGAGACAGAGGTGCAGGATGATACGGTCACAGTC--CATCACACGGATGAGCAGGCAACATCGACCTCAATGCACTGAGTGCTCTAGTTACA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119122 132 +    417917 CGTGTACTCCAAACGAGAGAAAAGGTGACCGAGCTGAAAAAG----GGAGACAGAGGTGCAGGATGAGACGGTCAGAGTC--CATCGCACGGATGAGCAGGCAACATCGACCTCAATGCACCGAGTGTTCCAGTTCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36267 130 + 141252148 tgtgtactccaaacgacagaaaaggtgaCCGAGCTGAAAGAG--CGGGAGACAGAGATGCAGGATGAGACAG----AGTC--CATCACATGAATGAGCAGGCAACATCGACCTCAATGTACCGAGTGTTACAGTTACC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107019 132 + 149150640 CGTGTA-CCCAAACGAGAGAAGAGGTGACGGAGCTG-AAAACAGCGGGAGACAGGGATGCAGGATGAGAC-GTAAGAGT---CATCACACGGACGAGCAGACGACATGGACATCAATGAACCAAGTGTTCCGGTTACA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161596 135 +  25972781 CGTGTACCCCAAACGAGAGAAGAGGTGACGGAGCTGAAAAACAGCGGGAGACAGGGATGCAGGATGAGAC-GTAAGAGTC--CATCACACGGACGAGCAGACGACATGGACATCAATGAACCAAGTGTTCCGGTTACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          114442 135 -   1025902 CGTGTACCCCAAACGAGAGAAGAGGTGACGGAGCTGAAAAACAGCGGGAGACAGAGATGCAGGATGAGAC-GTAAGCGTC--CATCACACGGACGAGCAGACGACATGGACATCAATGAACTGAGTGTTCCGGTTACA
i cerAty1.NW_012001098v1       C 0 I 954
s chlSab2.chrUn_KE147541v1        100709 135 -    811265 CGTGTACCCCAAACGAGAGAAGAGGTGACGGAGCTGAAAAAGGGCGGGAGACAGGGATCCAGGTGGAGAC-GTAAGAGTC--CATCACACGGACGAGCAGACGGCATGGACATCAATGAACCAAGTGTTCCGGTTACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          181974 136 +   1230721 CGTGTGACCCCAACGAGAGAAGAGGCGACGGAGCTGAAAAAGAGCGGGAGACAGGGACGCAGGACGGCACAGTAAGAGTC--CGTTGCACGGACAAGCAGACGACGTGGACATCAATGAACCCAGCGTTCCGGTTACA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     34499 134 +   2853901 TTCGTACTGCAATCGCGAGGAAGAG---CTGAGCTGAAAAAGAGCGGGCGGCAGAGACGCAGGAGGAGACGGCGAGAGCCGCCGTCACACAGAGGAGCAGGCGGCATCCACGTCAGCG-ACCACGTGCTCCAGTTTCA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                131630 107 +    465904 TCCGTTCTGTCATCGAGAGGAAAGG------------------------AGCAGAGACCCAGGGGGACAGGGGGAG------CGTCATATGGAGGGGCCGGCGGCATCAACGTCACTG-AGCACCTGCTGCGGAACTG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889  18 +    105888 I

a score=115488.000000
s hg38.chrX_KI270880v1_alt         51093 40 +    284869 agacaaaggtctgactgcagaaagaaaacagcattcacgt
s panTro5.chrX                    172671 40 + 155549662 AGACAAAGGTCTAACTGCAGAAAGAAAACAGCATTCACAT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119254 40 +    417917 AGACCAAGGTCTGACTGCAGAAAGAAAACAGCATTCACGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36397 40 + 141252148 AGACAAAGGTCTGACTGCAGAAAGAAAACAGCATTCACGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107151 40 + 149150640 AGGCAAAGATCTGGCTGCAGAAAGAAAACAGCACTTGTGT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161731 40 +  25972781 AGGCAAAGATCGGGCTGCAGAAAGAAAACAGCACTTGTGT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100844 40 -    811265 AGGCAAACATCTGGCTGCAGAAAGAAAACAGCATTTGTGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182110 40 +   1230721 AGACAGAGACCCGGCTGCAGAAAGAAAACAGCATTCGCGT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     34633 39 +   2853901 AGAC-GAGCCCCGACCGCAGGAAGAAAACAGCCTCCACGT
i calJac3.chrY                 C 0 I 318
s saiBol1.JH378345                131737 40 +    465904 AGACGGAGAACCGACCGCAGGAGGAACACAGCCTCTGTGT
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=12835.000000
s hg38.chrX_KI270880v1_alt         51133 5 +    284869 acatg
s panTro5.chrX                    172711 5 + 155549662 ACACG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119294 5 +    417917 ACACG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36437 5 + 141252148 ATACG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107191 5 + 149150640 ATACG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161771 5 +  25972781 ATACG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100884 5 -    811265 ATACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182150 5 +   1230721 ATACG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                131777 5 +    465904 GTACG
i saiBol1.JH378345             C 0 I 2
e calJac3.chrY                     34672 318 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=33309.000000
s hg38.chrX_KI270880v1_alt         51138 13 +    284869 ggag----acacagagg
s panTro5.chrX                    172716 13 + 155549662 GGAG----ACACAGAGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119299 13 +    417917 GGAG----ACACAGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36442 13 + 141252148 GGAG----ACACAGAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107196 13 + 149150640 GGAC----ACACAGGAG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161776 13 +  25972781 GGAC----GCACAGGAG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100889 13 -    811265 GCAG----ATACAGAAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182155 13 +   1230721 GGAG----ATACAGAAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     34990 13 +   2853901 GGGA----ACACAGAGG
i calJac3.chrY                 I 318 C 0
s saiBol1.JH378345                131784 17 +    465904 GAGACCTGACACAGAGG
i saiBol1.JH378345             I 2 I 1200
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=13955.000000
s hg38.chrX_KI270880v1_alt         51151 8 +    284869 acagaaag
s panTro5.chrX                    172729 8 + 155549662 ACAGAAAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119312 8 +    417917 ACAGAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36455 8 + 141252148 ACAGAAAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107209 8 + 149150640 ACAGAAGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161789 8 +  25972781 ACAGAAGG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100902 8 -    811265 ACAGAAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182168 8 +   1230721 ACAGAAGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35003 3 +   2853901 -CCG----
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e saiBol1.JH378345                131801 1200 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     90889 18 +    105888 I

a score=630208.000000
s hg38.chrX_KI270880v1_alt         51159 210 +    284869 aca--ggagatatatgtgacttaaggacccagaggctacacattttttttt-------gagatggaaaa----agagcaggcagacagtagagaaa----gctggtgtcgctgtattaacatcca-tgaagt-gacacaaggtgatggacagacctggagacagacaggccaccaaggaacgctgaagaggtcagtcaggggaagacaggc---------tgatgctaactttatcca
s panTro5.chrX                    172737 213 + 155549662 ACATGGGAGATATATGTGACTTAAGGACCCAGAGGCTACACATTTTTTTTT------TGAGATGGAAAA----AGAGCAGGCAGACAGTAGAGAAC----GCTGGTGTCGCTGTATTAACATCCA-TGAAGT-GACACAAGGTGATGGACAGACCTGGAGACAGACAGGCCACCAAGGAACGCCGAAGAGGTCAGTCAGGGGAAGACAGGA---------TGATGCTAACTTTATCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     90907 211 +    105888 ACA--GGAGATATATGTGACTTAAGGACCCAGAGGCTACACATTTTTTTTT------TGAGATGGAAAA----AGAGCAGGCAGACAGTAGAGAAA----CCTGGTGTCGCTGTATTAACATCCA-TGAAGT-GACACAAGGTGATGGACAGACCTGGAGACAGACAAGCCACCAAGGAACGCTGAAGAGGTCAGTCAGGGGAAGACAGGA---------TGATGCTAACTTTATCCA
i panPan2.chrUn_NW_014024225v1 I 18 C 0
s gorGor5.CYUI01015925v1          119320 217 +    417917 ACATGCGAGATATATGTGACTTAAGGACCCAGAGGCTACACATTTTTTTTT--TTTTTGAGATGGAAAA----AGAGCAGGCAGACAGTAGAGAAA----GCTGGTGTCGCTGTATTAACATCCA-TGAAGT-GACACAAGGTGATGGACAGACCTGGAGACAGACAGGCCACCAAGGAACGCTGAAGAGGTCAGTCAGGGGAAGACAGGA---------TGATGCTAACTTTATCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36463 223 + 141252148 ACACAGGAGATATATGTGACTTAAGGACCCAGAAACTACACATTTTTTTTTTTTTTTTGAGatggaaaaagatagagcaggcagaccataaagaaa----gctggtgtcgctgtattaacatcga-tgaagt-gacacaaggtgatggacaggcctggagacagacaggccaccaaggaacgccgaagaggtcagtcacgggaggacagga---------tgacgctaactttatcga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107217 211 + 149150640 ACACAGGAGACACACGTGGCTTAAGGACCCAGAGGCTGCACATTGTTTTG---------AGGTGGAAAAACACAGAGCAGGCAGACAGT----AAA----GCTGGCGTCGCCGTACTAACATCCAGCGAAGT-GACCCGAGGCGATGGACAGACCCGGAGACGGACAGGCCACCGCAGAACGCTGAAGAGGTCGGTCACGGGAGGACAGGA---------TGACGCTAACTTTATCCG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          161797 210 +  25972781 ACACAGGAGACACACGTGGCTTAAGGACCCAGAGGCTGCACATTGTTTTG---------AGGTGGAAAAATACAGAGCAGGCAGACAGT----AAA----GCTGGCGTCGCCGTACTAACATCCA-CGAAGT-GACACGAGGCGATGGACAGACCCGGAGACGGACAGGCCACCGCAGAACGCTGATGAGGTCGGTCACGGGAGGACAGGA---------TGACGCTAACTTTATCCG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        100910 211 -    811265 ACATAGGAGATACACGTGGCTTAAGGACCCAGAGGCTACACATTTTTTTTC--------AGGTGGAAAAAGACAGAGCAGGCAGACAGT----AAA----GCTGGCGTCGCCGTACTAACATCCA-TGAAGT-GACACAAGGCGATGGACAGACCCGGAGACGGCCAGGCCACCGCAGAACGCTGATGAGGTCGGTCACGGGAGGACAGGA---------TGATGCTAACTTTATCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182176 207 +   1230721 ACAGAGGAGATATACGTGGCTTAGGGACCCAGAGGCTACATATTTTTTTTG--------AGGTGGAAAA----AGAGCAGGCAGCCAGT----AAA----GCTGGGGTCGCTGTACTAACGTCCA-TGAAGG-GACACGAGGTGAGGGACAGACCTGGCGACGGACAGGCCACCGCAGAACGCCGGAGAGGGCGGTCACGGGAGGACAGGA---------CGACGCTAACTTTATCCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35006 226 +   2853901 ---TGGGACACGCACAAGACCTCAGGATCCAGAAGCTGCACGTGTGTCTTC-------CAGACGGAAAAAGACACAGCAGACAGACAGTCAAGAAACCACGCTGGTGTTGCTGTTTTAACATCCG-TGACGTCGGCACAACGTGACGGACATATGTGGAGACAGAGAGGCCACCACAGAACGCTGAC-AGATCGGTCACGGGAGGACAGAAACAGTCCACAGGGGCTGACTCTATCCG
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          203905 663 -    735872 I
e saiBol1.JH378345                131801 1200 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=276952.000000
s hg38.chrX_KI270880v1_alt         51369 67 +    284869 tgcctgacaacgcagcctcggcactgatcaagtaaaCACCACTGGACACAAACTGAGCCCGCTAGGC
s panTro5.chrX                    172950 67 + 155549662 TGCCTGACAACGCAGCCTCGGCACTCATCAAGTAAACACCACTGGACACAAACTCAGCCCGCCAGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91118 67 +    105888 TGCCTGACAACGCAGCCTCGGCACTGATCAAGTAAACACGACTGGACACAAACTCAGCCCGCCAGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119537 67 +    417917 TGCCTGACAACGCAGCCTCGGCACTGATCAAGTAAACACCACTGGACACAAACTCAGCCCGCCAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36686 67 + 141252148 tgcctgacaacgcagcctcGGCACTGATCAAGTAAACACCACTGGACACAAACTCAGCCCGCCAGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107428 66 + 149150640 TGCCTGACAACGCAGCCTTGGCACCGATCGAGTAAACACCACTGGGCACAAACTCAGCA-GCCAGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162007 67 +  25972781 TGCCTGACAACGCAGCCTTGGCACCGATCGAGTAAACACCACTGGGCACAAACTCAGCACGCCAGGA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101121 66 -    811265 TGCCTGACAACGCAGCCTTGGCACTGATCAAGTAAACACCACTGGGCACAAACTCACCACGCCA-GA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182383 67 +   1230721 TGCCTGACAACGCAGCCTTGGCACCGATCACATAAACACCACTGGACACAAACTCAGCACGCCAGGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35232 67 +   2853901 TGCCTGGCAATGCAGCCTTAGCGCTCATCAAGTGAATGCGGCTGGACACACACTCAGCAGGCCACGG
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          204568 67 -    735872 TGCCTGACAACGCAGCCTTAGCGCTCATCAAGTAAATACCACTGGACACGCAGTCAGCATGCCAGGG
i cebCap1.NW_016107987v1       I 663 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e saiBol1.JH378345                131801 1200 +    465904 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=26583.000000
s hg38.chrX_KI270880v1_alt         51436 9 +    284869 AAGGCGGAG
s panTro5.chrX                    173017 9 + 155549662 AAGGCGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91185 9 +    105888 AAGGCGGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119604 8 +    417917 AAGGC-GAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36753 9 + 141252148 AAGGTGGAG
i nomLeu3.chrX                 C 0 I 2
s rheMac8.chrX                    107494 9 + 149150640 AAGGAAGAG
i rheMac8.chrX                 C 0 I 2
s macNem1.NW_012017243v1          162074 9 +  25972781 AAGGAAGAG
i macNem1.NW_012017243v1       C 0 I 2
s chlSab2.chrUn_KE147541v1        101187 9 -    811265 AAGGAAGAC
i chlSab2.chrUn_KE147541v1     C 0 I 2
s colAng1.NW_012115411v1          182450 9 +   1230721 AAGGAGGAG
i colAng1.NW_012115411v1       C 0 I 2
s calJac3.chrY                     35299 9 +   2853901 AAGGTGCAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133001 9 +    465904 AAGCTGTGC
i saiBol1.JH378345             I 1200 C 0
s cebCap1.NW_016107987v1          204635 9 -    735872 AAGGTGGAG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1500.000000
s hg38.chrX_KI270880v1_alt         51445 1 +    284869 C
s panTro5.chrX                    173026 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91194 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119612 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s calJac3.chrY                     35308 1 +   2853901 C
i calJac3.chrY                 C 0 I 31
s cebCap1.NW_016107987v1          204644 1 -    735872 C
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e saiBol1.JH378345                133010 0 +    465904 C
e nomLeu3.chrX                     36762 2 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e chlSab2.chrUn_KE147541v1        101196 2 -    811265 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182459 2 +   1230721 I
e rheMac8.chrX                    107503 2 + 149150640 I
e macNem1.NW_012017243v1          162083 2 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=1500.000000
s hg38.chrX_KI270880v1_alt         51446 1 +    284869 C
s panTro5.chrX                    173027 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91195 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119613 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                133010 1 +    465904 C
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          204645 1 -    735872 C
i cebCap1.NW_016107987v1       C 0 C 0
e calJac3.chrY                     35309 31 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e nomLeu3.chrX                     36762 2 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e chlSab2.chrUn_KE147541v1        101196 2 -    811265 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182459 2 +   1230721 I
e rheMac8.chrX                    107503 2 + 149150640 I
e macNem1.NW_012017243v1          162083 2 +  25972781 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=57251.000000
s hg38.chrX_KI270880v1_alt         51447 13 +    284869 CACCCACCCCGGG
s panTro5.chrX                    173028 13 + 155549662 CACCCACCCCGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91196 13 +    105888 CACCCACCCCGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119614 13 +    417917 CACCCACCCCGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36764 13 + 141252148 CACCCACCTCGGG
i nomLeu3.chrX                 I 2 C 0
s rheMac8.chrX                    107505 12 + 149150640 CACCCACCT-GGG
i rheMac8.chrX                 I 2 C 0
s macNem1.NW_012017243v1          162085 13 +  25972781 CACCCACCCGGGG
i macNem1.NW_012017243v1       I 2 C 0
s chlSab2.chrUn_KE147541v1        101198 13 -    811265 CACCCACCCCGGG
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1          182461 13 +   1230721 CGCCCATCCCGGG
i colAng1.NW_012115411v1       I 2 C 0
s saiBol1.JH378345                133011 13 +    465904 CACCCACCCTGGG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          204646 13 -    735872 CACCCACCCCGGG
i cebCap1.NW_016107987v1       C 0 I 551
e calJac3.chrY                     35309 31 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=8595.000000
s hg38.chrX_KI270880v1_alt         51460 2 +    284869 CA
s panTro5.chrX                    173041 2 + 155549662 CA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91209 2 +    105888 CA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119627 2 +    417917 CA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36777 2 + 141252148 CA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107517 2 + 149150640 CA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162098 2 +  25972781 CA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101211 2 -    811265 CA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182474 2 +   1230721 CA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                133024 2 +    465904 CA
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     35309 31 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=22664.000000
s hg38.chrX_KI270880v1_alt         51462 12 +    284869 CAGAC--------------------ACAGGGA
s panTro5.chrX                    173043 12 + 155549662 CAGAC--------------------ACGGAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91211 12 +    105888 CCGAC--------------------ACGGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119629 12 +    417917 CAGAC--------------------ACGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36779 12 + 141252148 CAGAC--------------------ACGGGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107519 12 + 149150640 CCGAC--------------------ACGGGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162100 12 +  25972781 CCGAC--------------------ACAGGGA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101213 12 -    811265 CCAAC--------------------ACAGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182476 12 +   1230721 CCGAC--------------------ACAGGGA
i colAng1.NW_012115411v1       C 0 I 9
s calJac3.chrY                     35340 31 +   2853901 CAGACCCACCCACCCCAGGAAGTTTGGGGGG-
i calJac3.chrY                 I 31 C 0
s saiBol1.JH378345                133026 11 +    465904 GTGAC--------------------AGGGGA-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=66498.000000
s hg38.chrX_KI270880v1_alt         51474 32 +    284869 AGGC----CGGGACCACCCACCCTGGGCACAGACAC
s panTro5.chrX                    173055 32 + 155549662 AGGC----TGGGACCACCCACCCAGGGCACAGACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91223 32 +    105888 AGGC----CGGGACCACCCACCCTGGGCACCGACAC
i panPan2.chrUn_NW_014024225v1 C 0 T 37
s gorGor5.CYUI01015925v1          119641 32 +    417917 AGGC----CGGGACCACCCACCCCGGGCACAGACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36791 23 + 141252148 AGGC----CGGGACCACCCACC---------AACAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107531 30 + 149150640 AGGC----CGGGA-C-CCCACCCTGGGCACTGATGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162112 31 +  25972781 AGGC----CGGGACC-CCCACCCTGGGCACCGACAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101225 31 -    811265 TGGC----TGGGACCACCCACCCTGGGCACCGACG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35371 35 +   2853901 AAGCCGGGCGGGCTCACCCACCCCGGGCATTGACA-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133037 31 +    465904 AAGC----TGTGCCCACCCGCCCCGGGCAGCGACA-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=89402.000000
s hg38.chrX_KI270880v1_alt         51506  73 +    284869 GGGGAAGGCCGGGACCACCCACCTTGGGCACTGACGGGGGGAAGGCCGGGATC-----------------------------------ACCCACCCCGGGCACTGACG
s panTro5.chrX                    173087  73 + 155549662 GGAGAAGGCTGGGACCACCCACCCAGGGCACCGACACAGGGAAGGCCGGGACC-----------------------------------ACCCACCCCGGGCACAGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91218  73 +    105888 GGGGAAGGCCGGGACCACCCACCCTGGGCACCGACACGGGGAAGGCTGGGCCC-----------------------------------ACCCACCCCGGGCACCGACG
i panPan2.chrUn_NW_014024225v1 T 37 T 36
s gorGor5.CYUI01015925v1          119673   8 +    417917 -------------------------------------GGGGAAGG---------------------------------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36814  73 + 141252148 AGGAAAGGCCAGGACCACCTACCCTGGGCACCGACACGGGGAAGGCCGAGTCC-----------------------------------ACTCACTCCGGGCACCGACA
i nomLeu3.chrX                 C 0 I 1
s rheMac8.chrX                    107561  72 + 149150640 GGGGAAAGCT-GGACC-CCCACCCTGGGCACTGACACGGGGAAGGCCGGGACC----------------------------------ACCCCACCCTGGGCACTGACA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162143 107 +  25972781 GGGGAAGGCCGGGACC-CCCGCCCTGGGCACCGACACGGGGAAGGCCGGGACCCCCGCCCTGGGCACCGACACAGGGAAGGCCGGGACCCCCGCCCTGGGCACCGACA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101256  50 -    811265 GGGGAAGGCC-GGGAC-CCCACCCTGGGCACCGACACGGGGAA-GCTGGGGCC-------------------------------------------------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35406  68 +   2853901 GGGTGAAGGCAGAGCCACCCACTGTGGGCAGTGAC-GGGGGGAAGCCAG---------------------------------------ACCCACCCCAGGCACTTATG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133068  73 +    465904 GGGGAAAGCTTTGCCCACCCACCCTGGGCAGTGATGGGGGGGAAGTCAGACCC-----------------------------------ACCCACCCTGCGCAGTGATG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488   9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-3655.000000
s hg38.chrX_KI270880v1_alt         51579 1 +    284869 -G
s panTro5.chrX                    173160 1 + 155549662 -C
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                    107633 1 + 149150640 -C
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162250 1 +  25972781 -C
i macNem1.NW_012017243v1       C 0 C 0
s calJac3.chrY                     35474 1 +   2853901 G-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133141 1 +    465904 G-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e nomLeu3.chrX                     36887 1 + 141252148 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e chlSab2.chrUn_KE147541v1        101306 0 -    811265 C
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e gorGor5.CYUI01015925v1          119681 0 +    417917 C
e panPan2.chrUn_NW_014024225v1     91291 36 +    105888 T

a score=78624.000000
s hg38.chrX_KI270880v1_alt         51580 35 +    284869 GGGGAAGGCCGGGACCACCCACCCCGGGCACAGAC
s panTro5.chrX                    173161 35 + 155549662 GGAGAAGGCCGGGACCACCCACCCAGGGCACCGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91255 35 +    105888 GGGGAAGGCTGGGCCCACCCACCCCGGGCACCGAC
i panPan2.chrUn_NW_014024225v1 T 36 I 1
s gorGor5.CYUI01015925v1          119681 27 +    417917 --------CCGGGACCACTCACCCCGGGCACTGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36888 35 + 141252148 GGGGAAGCCCGGGACCACCCACCCTGGGCACCGAC
i nomLeu3.chrX                 I 1 C 0
s rheMac8.chrX                    107634 34 + 149150640 AGGGAAGGCCGGGA-CACCCACCCTGGGCACCGAC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162251 34 +  25972781 AGGGAAGGCCGGGA-CCCCCGCCCTGGGCACCGAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101306 19 -    811265 ----------------ACCCACCCTGGGCACCGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35475 34 +   2853901 -GGGGAAGCTGGGCCCACCCACCCCAGGCACAGAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133142 33 +    465904 -GGGTAAGTCAGACCCACCCACCCTGGG-AGTGAC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=-1210.000000
s hg38.chrX_KI270880v1_alt         51615 2 +    284869 AC
s panTro5.chrX                    173196 2 + 155549662 AC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          119708 2 +    417917 AT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36923 2 + 141252148 AC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107668 2 + 149150640 AC
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162285 2 +  25972781 AC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101325 2 -    811265 GG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35509 1 +   2853901 A-
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e saiBol1.JH378345                133175 0 +    465904 C
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M
e panPan2.chrUn_NW_014024225v1     91290 1 +    105888 I

a score=102951.000000
s hg38.chrX_KI270880v1_alt         51617 39 +    284869 GGGGAAGG-CCGGGACCACCCACCTTGGGCACCGACGGGG
s panTro5.chrX                    173198 39 + 155549662 GGGGAAGG-CCGGGACCACCCACCCCGGGCACAGACACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91291 39 +    105888 GGGGAAGG-CCGGGACCACCCACCCTGGGCACCGACGGGG
i panPan2.chrUn_NW_014024225v1 I 1 C 0
s gorGor5.CYUI01015925v1          119710 39 +    417917 GGGGAAGG-CCGGGACCACCCACCCTGGGCACCGATGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36925 40 + 141252148 GGGGACGGCCCGGGACCACCCACCCTGGGCACCGACACGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107670 38 + 149150640 GGGGAAGG-CCGGGACC-CCCGCCATGGGCACCGACACGG
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162287 38 +  25972781 GGAGAAGG-CCGGGACC-CCCACCCTGGGCACTGATGGGG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101327 38 -    811265 GGGGAAGC-TGGGGCCA-CCCACCCTGGGCACCGACGGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35510 39 +   2853901 GGTGGAAG-CTGAGCCCACCCATCCCGGGCACTGACAGGG
i calJac3.chrY                 C 0 T 252
s saiBol1.JH378345                133175 39 +    465904 GGCGGAAG-CTGGGCCCACACAGCCCGGGCAGTGACAGAG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=71054.000000
s hg38.chrX_KI270880v1_alt         51656 34 +    284869 GGAAGGCCGGGACCACCCACC---------------------------TTGGGCACCGACA
s panTro5.chrX                    173237 34 + 155549662 AGAAGGCCGGGACCACCCACC---------------------------CTGGGCACCGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91330 34 +    105888 GGAAGGCCGGGACCACCCACC---------------------------ATGGGCACCGATG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119749 34 +    417917 GAAAGGCCGGGACCACCCACC---------------------------CTGGGAACCGATG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36965 34 + 141252148 GGAAGGCCGAGTCCACTCACT---------------------------CCAGGCACCGACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107708 33 + 149150640 GGAAGGCCGGGACC-CCCGCC---------------------------ATGGGCACCGACA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162325 33 +  25972781 GGAAAGCTGGGACC-CCCACC---------------------------CTGGGTACCGACA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101365 60 -    811265 GGAAGCTGGGGCCA-CCCACCCTGGGCACCGACACAGGNNNNNNNNNNCTGGGCACCGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35297 34 +   2853901 GGAAGGTGCAGCCCACCCACC---------------------------CCGGGCAGCGAGA
i calJac3.chrY                 T 252 C 0
s saiBol1.JH378345                133214 33 +    465904 GGAAGCTG-GGCCCACCCGCC---------------------------CCGGGCACCAATA
i saiBol1.JH378345             C 0 T 532
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=36830.000000
s hg38.chrX_KI270880v1_alt         51690 15 +    284869 CGGGGAAGGCCGGGA
s panTro5.chrX                    173271 15 + 155549662 CGGGGAAGGCCGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91364 15 +    105888 GGGGGAAGGCCGGGA
i panPan2.chrUn_NW_014024225v1 C 0 T 184
s gorGor5.CYUI01015925v1          119783 15 +    417917 GGGGGAAGGCCGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     36999 15 + 141252148 CGGGGACGGCCGAGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107741 15 + 149150640 CGGGGAAGGCCGGGA
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162358 15 +  25972781 CGGGGAAGGCCGGGA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101425 15 -    811265 CGGGGAAGGCCAGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35331 14 +   2853901 -GGCGGAAGCCAGAC
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e saiBol1.JH378345                133247 532 +    465904 T
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=3600.000000
s hg38.chrX_KI270880v1_alt         51705 1 +    284869 C
s panTro5.chrX                    173286 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91195 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 T 184 C 0
s gorGor5.CYUI01015925v1          119798 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37014 1 + 141252148 C
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107756 1 + 149150640 C
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1          162373 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101440 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35345 1 +   2853901 C
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e saiBol1.JH378345                133247 532 +    465904 T
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e macFas5.chr7                 171682234 12162 - 171882078 M

a score=52758.000000
s hg38.chrX_KI270880v1_alt         51706 23 +    284869 CACCCACCCCGGGCACCGACGGG
s panTro5.chrX                    173287 23 + 155549662 CACCCACCCCGGGCACAGACACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91196 23 +    105888 CACCCACCCCGGGCACCGACACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119799 23 +    417917 CACCCACCCTGGGCACCGATGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37015 23 + 141252148 CACTCACCCCGGGCACCGACACG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107757 22 + 149150640 -CCCCGCCATGGGCACCGACACG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694397 23 - 171882078 CACCCACCCTGGGCACCGACACA
i macFas5.chr7                 M 12162 C 0
s macNem1.NW_012017243v1          162374 22 +  25972781 -CCCCGCCCTGGGCACCGACACA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101441 22 -    811265 -CCCCACCCTGGCCACCAACGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35346 22 +   2853901 CACCCACCCCAGGAAGTTTGGG-
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e saiBol1.JH378345                133247 532 +    465904 T
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I

a score=147750.000000
s hg38.chrX_KI270880v1_alt         51729 45 +    284869 GGGAAGGCC---GGGACCACCCACCTTGGGCACCGACACGGGGAAGGC
s panTro5.chrX                    173310 45 + 155549662 GAGAAGGCC---GGGACCACCCACCCAGGGCACCGACACGGGGAAGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91219 45 +    105888 GGGAAGGCC---GGGACCACCCACCCTGGGCACCGACACGGGGAAGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119822 45 +    417917 GGGAAGGCC---GGGACCACCCACCATGGGCACCGACGCGGGGACGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37038 45 + 141252148 GGGAAGGCC---GGGACCACCCACCCTGGGCACCGACACGGGGAAGGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107779 44 + 149150640 GGGAAGGCC---GGGACC-CCCACCCTGGGCACCGACATGGAGAAGGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694420 44 - 171882078 GGGAAGGCC---GGGACC-CCCACCCTGGGCACCGACACGGGGAAGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162396 44 +  25972781 GGGAAGGCC---GGGACC-CCCGCCCTGGGCACCGACACAGGGAAGGC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101463 44 -    811265 GGGAA-GCG---GGGACCACCCTCCCTGTGCACCGACACAGGCAAGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35368 47 +   2853901 GGGAAGCCGGGCGGGCTCACCCACCCCGGGCATTGACAGGGTGAAGG-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132715 43 +    465904 GGGAAGGTG---GAGCCCACCCACCCAGGGCAGCAACGGGG-GAGGC-
i saiBol1.JH378345             T 532 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I

a score=14745.000000
s hg38.chrX_KI270880v1_alt         51774 7 +    284869 CGGGACC
s panPan2.chrUn_NW_014024225v1     91264 7 +    105888 TGGGCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     37083 7 + 141252148 CGAGTCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    107823 7 + 149150640 CGGGACC
i rheMac8.chrX                 C 0 I 178
s macFas5.chr7                 171694464 7 - 171882078 CGGGACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162440 7 +  25972781 TGGGACC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101507 7 -    811265 TGGGACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35415 7 +   2853901 CAGAGCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132758 7 +    465904 CGGGCCC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    173355 0 + 155549662 C
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e gorGor5.CYUI01015925v1          119867 0 +    417917 C

a score=910.000000
s hg38.chrX_KI270880v1_alt         51781 1 +    284869 A
s panPan2.chrUn_NW_014024225v1     91271 1 +    105888 A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s nomLeu3.chrX                     37090 1 + 141252148 A
i nomLeu3.chrX                 C 0 C 0
s calJac3.chrY                     35422 1 +   2853901 A
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132765 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    173355 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        101514 0 -    811265 C
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e rheMac8.chrX                    107830 178 + 149150640 I
e macNem1.NW_012017243v1          162447 0 +  25972781 C
e macFas5.chr7                 171694471 0 - 171882078 C
e gorGor5.CYUI01015925v1          119867 0 +    417917 C

a score=226517.000000
s hg38.chrX_KI270880v1_alt         51782 104 +    284869 CCCACCCCGGGCACTGACGGGGGGGAAGGCCGGGACCACCCACCCCGGGCACCGACGGGGGGAAGGCCGGGACCACCCACCTTGGGCACCGACGGGGGGAAGGA
s panPan2.chrUn_NW_014024225v1     91272 102 +    105888 CCCACCCCGGGCACCGACGGGGG--AAGGCCGGGACCACCCACCCTGGGCACCGACGGGGGGAAGGCCGGGACCACCCACCATGGGCACCGATGGGGGGAAGGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119867  74 +    417917 ------------------------------CGAGTCCACTCACCCTGGGCAGTGACACAGGGAAGGCCAGGACCACCCACCCTGGGCACCGACGGGGGTAAGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37091 103 + 141252148 CTCACCCCGGGCACCGACACGGG-GAAGGCCGGGACCACCCACCCTGGGCACCGACACGGGGAAGGCCGGGACCACCCACCCCGGGCACCGACACGGGGAAGGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108008 100 + 149150640 CCCACCCTGGGCACCAACAGGGG-GAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGAGAAGGCCGGGACC-CCCACCCTGGGAACTGACAGGGGGAA-GC
i rheMac8.chrX                 I 178 C 0
s macFas5.chr7                 171694471 101 - 171882078 CCCGCCCTGGGCACCGACACGGG-GAAGGCCGGGACC-CCCACCCTGGGCACCGACATGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGAGAAGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162447  99 +  25972781 CCCACCCTGGGCACCGACAGGGG-GAA-GCTGGGACC-CCCACCCTGGGCACCGACACGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGGGAA-GC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101514 101 -    811265 CCCACCCTGGGCACTGACACGGG-GAAGGCCGGGACCACCCACCCTGGGCAATGATG-GGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGGGAAGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35423  96 +   2853901 CCCACTGTGGGCAGTGACGGGGG-GAA-GCCAG----ACCCACCCCAGGCACTTATG-GGGGGAAGCTGGGCCCACCCACCCCAGGCACAGACAGGTGGAA-GC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132766  96 +    465904 CGCATGCCGGACGCTTATCGGGG-GAG-GCCGGGCCCACCCACCCTGGGCAGTAAC---GAGAAAGCTGTGCCCACCCACCCTGGGCAGTGAC--GAGAAA-GC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e panTro5.chrX                    173355   0 + 155549662 C
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488   9 +   1230721 I

a score=9692.000000
s hg38.chrX_KI270880v1_alt         51886 5 +    284869 CGGGA
s panTro5.chrX                    173355 5 + 155549662 CGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91374 5 +    105888 CGGGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          119941 5 +    417917 CGGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37194 5 + 141252148 CGAGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108108 5 + 149150640 TGGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694572 5 - 171882078 CGGGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162546 5 +  25972781 TGGGG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101615 5 -    811265 CAGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35519 5 +   2853901 TGAGC
i calJac3.chrY                 C 0 T 215
s saiBol1.JH378345                132862 5 +    465904 TGTGC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I

a score=43414.000000
s hg38.chrX_KI270880v1_alt         51891 17 +    284869 CCACCCACCCC------------------------------------GGGCAC
s panTro5.chrX                    173360 17 + 155549662 CCACCCACCCC------------------------------------GGGCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91379 17 +    105888 CCACCCACCCC------------------------------------GGGCAC
i panPan2.chrUn_NW_014024225v1 C 0 T 110
s gorGor5.CYUI01015925v1          119946 17 +    417917 CCACCCACCAT------------------------------------GGGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37199 17 + 141252148 CCACTCACTCC------------------------------------AGGCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108113 16 + 149150640 CC-CCCACCCT------------------------------------GGGCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694577 16 - 171882078 CC-CCCACCCT------------------------------------GGGCAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162551 52 +  25972781 CC-CCCACCCTGGGCACCGACACGGGGAAGGCCGGGAACCCCGCCCTGGGCAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101620 16 -    811265 CC-CCCACCCT------------------------------------GGCCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35309 17 +   2853901 CCACCCACCCC------------------------------------GGGCAG
i calJac3.chrY                 T 215 C 0
s saiBol1.JH378345                132867 17 +    465904 CCACCCGCCCC------------------------------------AGGCAG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I

a score=344692.000000
s hg38.chrX_KI270880v1_alt         51908 111 +    284869 CGACGGGGGGAAGGCCGGGACCACCCACCCCGGGCACCGACCGGGGGAAGGC----CGGGACCACCCACCCTGGGCACCGACGGGGGGAAGGCCGGGACCACCCACCCTGGGCAC
s panTro5.chrX                    173377 111 + 155549662 CGACACGGGGAAGGCTGAGTCCACCCACCCCGGGCACTGACACGGGGAAGGC----CGGGACCACCCACCCCGGGCACCGACACGGGTACGGCCGAGTCCACTCACCCTGGGCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91286 110 +    105888 CGACG-GGGGAAGGCCGGGACCACCCACCCTGGGCACCGACGGGGGGAAGGC----CGGGACCACCCACCATGGGCACCGATGGGGGGAAGGCCGGGACCACCCACCCCGGGCAC
i panPan2.chrUn_NW_014024225v1 T 110 T 106
s gorGor5.CYUI01015925v1          119963 111 +    417917 CGACAGGGGGAAGGCCGGGACCACCCACCCCGGGCACCGACACGGGGAAGGC----CGGGACCACCCACCCTGGGCACCGACGCGGGGACGGCCGAGTCCACTCACCCTGGGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37216 111 + 141252148 CGACACGGGGACGGCCGAGTCCACTCACCCCGGGCACCGACACGGGGAAGGC----CGGGACCACTCACTCCGGGCACCGACACGGGGAAGGCCGGGACCACCCACCCTGGGCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108129 107 + 149150640 CGACACGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACAGGGGGAA-GC----TGGGACC-CCCACCCTGGGCACCAACAGGGGGAAGGCCGGGACC-CCCACCCTGGGCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694593 106 - 171882078 TGACAGGGGGAA-GCTGGGGCC-CCCACCCTGGGCACCGACACGGGGAAGGC----CGGGACC-CCCACCCTGGGCACCGACAGGGGGAA-GCTGGGGCC-CCCACCCTAGGCAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162603 106 +  25972781 CGACACGGGGAA-GCTGGGACC-CCCACCCTGGGCACCGACAGGGGGAA-GC----TGGGGCC-CCCACCCTGGGCACCGACACAGGGAAGGCCGGGACC-CCCACCCTGGGCAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101636 109 -    811265 CAACGGGGGGAA-GCTGGGACCACCCACCCTGGGCACCGACACAGGGAAGGC----TGGGACC-CCCACCCTGGGCACTGACACGGGGAAGGCCGGGACCACCCACCCTGGGCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35326 111 +   2853901 CGAGAGGCGGAA-GCCAGACCCACCCACCCCAGGAAGTTTGGGGGGAA--GCCGGGCGGGCTCACCCACCCCGGGCATTGACAGGGTGAA-GGCAGAGCCACCCACTGTGGGCAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132884 107 +    465904 CGACAGGGGAAA-GCTGTGCCCACCCACCCCGGGCAGTGACAGGGGAA--GC----TGTGCCCACCCACCCTGGGCAGCGACAGGGGAAA-GCTGTGCCCACCCACCCTGGGCAG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488   9 +   1230721 I

a score=3374.000000
s hg38.chrX_KI270880v1_alt         52019 5 +    284869 CGACC
s panTro5.chrX                    173488 5 + 155549662 CGACG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          120074 5 +    417917 TGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37327 5 + 141252148 CGACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108236 5 + 149150640 CGACA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694699 5 - 171882078 CGACA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162709 5 +  25972781 TGATG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101745 4 -    811265 CGAT-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35437 4 +   2853901 TGAC-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132991 4 +    465904 CGAC-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488 9 +   1230721 I
e panPan2.chrUn_NW_014024225v1     91396 106 +    105888 T

a score=40105.000000
s hg38.chrX_KI270880v1_alt         52024 15 +    284869 GGGGGAAGGC----CGGGA
s panTro5.chrX                    173493 15 + 155549662 GGGGGAAGGC----CGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91290 15 +    105888 GGGGGAAGGC----CGGGA
i panPan2.chrUn_NW_014024225v1 T 106 C 0
s gorGor5.CYUI01015925v1          120079 15 +    417917 CGGGGAAGGC----CGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37332 15 + 141252148 CGGGGAAGGC----CGGGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108241 15 + 149150640 CGGAGAAGGC----CGGGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694704 15 - 171882078 CGGAGAAGGC----CGGGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162714 15 +  25972781 GGGGGAAAGC----TGGGA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101749 14 -    811265 -GGGGGAAGC----CAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     35441 11 +   2853901 GGGGGGAAGC----C----
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                132995 15 +    465904 AGGGGAAAGCTGTGC----
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I
e colAng1.NW_012115411v1          182488  9 +   1230721 I

a score=-14611.000000
s hg38.chrX_KI270880v1_alt         52039 3 +    284869 CC--A
s panTro5.chrX                    173508 3 + 155549662 CC--A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91305 3 +    105888 CC--A
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120094 3 +    417917 CC--A
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37347 3 + 141252148 CC--A
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108256 2 + 149150640 CC---
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694719 2 - 171882078 CC---
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162729 2 +  25972781 CC---
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101763 2 -    811265 CC---
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182497 3 +   1230721 CCA--
i colAng1.NW_012115411v1       I 9 C 0
s calJac3.chrY                     35452 3 +   2853901 --AGA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133010 3 +    465904 --CCA
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I
e cerAty1.NW_012001098v1          114577 954 -   1025902 I

a score=373197.000000
s hg38.chrX_KI270880v1_alt         52042  81 +    284869 CCCACCCTG-------------------------------------GGCACCGACGGGGGGAAGGCCGGGACCACCCACCTTGGGCACCGACGGGGGGAAGGCCGGGACCACCCACCT
s panTro5.chrX                    173511  81 + 155549662 CCCACCCTG-------------------------------------GGCACCGACGGGGGGAAGGCCGGGACCACCCACCATGGGCACCGACGCGGGGACGGCCGAGTCCACTCACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91308  81 +    105888 CCCACCCTG-------------------------------------GGCACCGACGGGGGGAAGGCCGGGACCACCCACCATGGGCACCGATGGGGGGAAGGCCGGGACCACCCACCC
i panPan2.chrUn_NW_014024225v1 C 0 T 37
s gorGor5.CYUI01015925v1          120097  81 +    417917 CCCACCCTG-------------------------------------GGCACCGATGGGGGGAAGGCCGGGACCACCCACCCTGGGCACCGACGCGGGGACGGCCGAGTCCACTCACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37350 118 + 141252148 CCCACCCCGGGCACCGACACGGGGAAGGCCGAGTCCACTCACTCCAGGCACCGACACGGGGAAGGCCGGGACCACTCACCCCGGGCACCGACACGGGGACGGCCGGGACCACTCACCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108258  78 + 149150640 CCCACCCTG-------------------------------------GGAACTGACAGGGGGAA-GCTGGGGCC-CCCACCCTGGGCACCAACAGGGGGAAGGCCGGGACC-CCCACCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694721  78 - 171882078 CCCACCCTG-------------------------------------GGCACTGACAGGGGGAA-GCTGGGGCC-CCCACCCTGGGCACCGACAGGGGGAAGGCCGGGACC-CCCACCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162731  79 +  25972781 CCCACCCTG-------------------------------------GGCACTGACACGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGATGCAGGGAAGGCCGGGACC-CCCACCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115531  76 -   1025902 CCCACCCTG-------------------------------------GGCACCGACACGGGGAA-GCCGGGACC-CCCACCCTGGGCACCGAC--GGGGGAAGCCGGGACC-CCCACCC
i cerAty1.NW_012001098v1       I 954 C 0
s chlSab2.chrUn_KE147541v1        101765  79 -    811265 CCCACCCTG-------------------------------------GGCACCGACACGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGGGAAGGCCGGGACC-CCTGCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182500  78 +   1230721 CCCACCCTG-------------------------------------GGCACCGACACGGGGAAGGCCGGGACC-CCCACCCTGGGCACCGACACGGGGAAGCCTGGGACC-CC-ACCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35455  79 +   2853901 CCCACCCCA-------------------------------------GGCACTTATGGGGGGAA-GCTGGGCCCACCCACCCCAGGCACAGACA-GGTGGAAGCTGAGCCCACCCATCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133013  79 +    465904 CCCACCCTG-------------------------------------GGCAGTGACAGGGGAAA-GCTGTGCCCACCCGCCCCGGGCAGCGACA-GGGGAAAGCTTTGCCCACCCACCC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I

a score=204632.000000
s hg38.chrX_KI270880v1_alt         52123 40 +    284869 TGGGCACCGACACGGGGAAGGCCGGGACCACCCACCCCGG
s panTro5.chrX                    173592 40 + 155549662 TGGGCACTGACACAGGGAAGGCCAGGACCACCCACCCTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91352 40 +    105888 TGGGCACCGATGGGGGGAAGGCCGGGACCACCCACCCCGG
i panPan2.chrUn_NW_014024225v1 T 37 C 0
s gorGor5.CYUI01015925v1          120178 40 +    417917 TGGGCACTGACACGGGGAAGGCCAGGACCACCCACCATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37468 40 + 141252148 CGGGCACCAACACGGGGAAGGCCGGGACCACCCACCCTGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108336 39 + 149150640 TGGGCACCGACACGGGGAAGGCCGGGACC-CCCACCCTGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694799 39 - 171882078 TGGGCACCGACACGGGGAAGGCCGGGACC-CCCACCCTGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162810 39 +  25972781 TGGGCACCGATGCAGGGAAGGCCGGGACC-CCCACCCTGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115607 39 -   1025902 TGGGCACCGACACGGGGGAAGCCGGGACC-CCCACCCTGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101844 40 -    811265 TGGGCAACAACACGGGGAAGGCCGGGACCACCCACCCTGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182578 38 +   1230721 TGGGGACCGATACGGGGAAGCCTGGGAC--CCCACCCTGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35534 39 +   2853901 CGGGCACTGAC-AGGGGGAAGCCGGGACCACCTGCCCCGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133092 40 +    465904 TGGGCAGTGATGGGGGGGAAGTCAGACCCACCCACCCTGC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e otoGar3.GL873584                 95694 1852 +  11138919 I

a score=21172.000000
s hg38.chrX_KI270880v1_alt         52163 5 +    284869 GCACT
s panTro5.chrX                    173632 5 + 155549662 GCACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91392 5 +    105888 GCACT
i panPan2.chrUn_NW_014024225v1 C 0 T 74
s gorGor5.CYUI01015925v1          120218 5 +    417917 GCACC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37508 5 + 141252148 GCACT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108375 5 + 149150640 GCACC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694838 5 - 171882078 GCACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162849 5 +  25972781 GCACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115646 5 -   1025902 GCACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101884 5 -    811265 GCACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182616 1 +   1230721 G----
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35573 5 +   2853901 ATACT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133132 5 +    465904 GCAGT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97546 5 +  11138919 GCACT
i otoGar3.GL873584             I 1852 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=38722.000000
s hg38.chrX_KI270880v1_alt         52168 12 +    284869 ---GACGGGGGGAAG
s panTro5.chrX                    173637 12 + 155549662 ---GACGGGGGGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91323 12 +    105888 ---GACGGGGGGAAG
i panPan2.chrUn_NW_014024225v1 T 74 C 0
s gorGor5.CYUI01015925v1          120223 12 +    417917 ---GATGCGGGGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37513 12 + 141252148 ---GACGAGGGGAAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108380 11 + 149150640 ---GACACGGGG-AA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694843 11 - 171882078 ---GACACGGGG-AA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162854 12 +  25972781 ---GATGGGGGGAAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115651 10 -   1025902 ---GACG-GGGG-AA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101889 12 -    811265 ---GACACAGGGAAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182617 12 +   1230721 ---GACACGGGGAAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35578 12 +   2853901 ---GACGGCGGGGGG
i calJac3.chrY                 C 0 T 72
s saiBol1.JH378345                133137 12 +    465904 ---GATGGGGGTAAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97551 15 +  11138919 TATGGGATGGGGCAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=440.000000
s hg38.chrX_KI270880v1_alt         52180 1 +    284869 -G
s panTro5.chrX                    173649 1 + 155549662 -G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91335 1 +    105888 -G
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120235 1 +    417917 -G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37525 1 + 141252148 -G
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108391 1 + 149150640 -G
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694854 1 - 171882078 -G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162866 1 +  25972781 -G
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115661 1 -   1025902 -G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101901 1 -    811265 -G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182629 1 +   1230721 -G
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                 97566 1 +  11138919 C-
i otoGar3.GL873584             C 0 C 0
e calJac3.chrY                     35590 72 +   2853901 T
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I
e saiBol1.JH378345                133149 0 +    465904 C

a score=261131.000000
s hg38.chrX_KI270880v1_alt         52181 60 +    284869 CCGGGACCACCCACCT------------------------------------TGGGCACCGACCGGG------GGAAGGCCAGGACCACCCACCCTGGGCAC
s panTro5.chrX                    173650 60 + 155549662 CCAGGACCACCCACCC------------------------------------TGGGCACCGACGGAG------GGAAGGCCGGGACCACCCACCCTGGGCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91336 60 +    105888 CCGGGACCACCCACCA------------------------------------TGGGCACCGATGGGG------GGAAGGCCGGGACCACCCACCCCGGGCAC
i panPan2.chrUn_NW_014024225v1 C 0 T 74
s gorGor5.CYUI01015925v1          120236 60 +    417917 CCGGAACCACCCACCA------------------------------------TGGGCACCGACGGGG------GGAAGGCCGGGACCACACACCCTGGGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37526 96 + 141252148 CTGGGACCACCCACCACGGGCACGGAGAAGGGGAAGGCTGGTACCGCCCACCTGGGCACCGACAGGA------GGAAGGCTGGGACCACCCACCCTGGGCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108392 58 + 149150640 CTGGGGCC-CCCACCC------------------------------------TGGGCACCGACACGG------GGAAGGCCGGGACC-CCCACCCTGGGCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694855 58 - 171882078 CTGGGGCC-CCCACCC------------------------------------TGGGCACCGACACGG------GGAAGGCCGGGACC-CCCACCCTGGGCAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162867 58 +  25972781 CTGGGACC-CCCACCC------------------------------------TGGGCACCGACACGG------GGAAGGCCGGGACC-CCCGCCCTGGGCAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115662 56 -   1025902 CCGGGACC-CCCACCC------------------------------------TGGGCACCG--ACGG------GGGAAGCCGGGACC-CCCACCCTGGGCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101902 59 -    811265 CCGGGACCACCCACCC------------------------------------TGGGCACTGATGGGG------GGAAAGCCAGGACC-CCCACCCTGGGCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182630 58 +   1230721 CCGGGACC-CCCAGCC------------------------------------TGGGCGCCGACACGG------GGAAGGTCGGGACC-CCCACCCTGGGCAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35518 59 +   2853901 CTGAGCCCACCCATCC------------------------------------CGGGCACTGACA-GG------GGGAAGCCGGGACCACCTGCCCCGGATAC
i calJac3.chrY                 T 72 C 0
s saiBol1.JH378345                133149 57 +    465904 TCAGACCCACCCACCC------------------------------------TGGG-AGTGAC--GG------CGGAAGCTGGGCCCACACAGCCCGGGCAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97567 58 +  11138919 CTTGGCACACACAGCA------------------------------------TGGACACTGATAGAGAAACACAGAAGCGCAGGAAT-CCCGCAC-------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=27078.000000
s hg38.chrX_KI270880v1_alt         52241 6 +    284869 CGACGG
s panTro5.chrX                    173710 6 + 155549662 CGACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91322 6 +    105888 CGACGG
i panPan2.chrUn_NW_014024225v1 T 74 C 0
s gorGor5.CYUI01015925v1          120296 6 +    417917 CGATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37622 6 + 141252148 CGATGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108450 6 + 149150640 CAACAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694913 6 - 171882078 CGACAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162925 6 +  25972781 CGACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115718 6 -   1025902 CGATGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101961 6 -    811265 TGACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182688 6 +   1230721 CGACAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35577 6 +   2853901 TGACGG
i calJac3.chrY                 C 0 I 18
s saiBol1.JH378345                133206 6 +    465904 TGACAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97625 6 +  11138919 AGAGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=103485.000000
s hg38.chrX_KI270880v1_alt         52247 24 +    284869 -GGGGAAAGCCGGGACCACCCACCA
s panTro5.chrX                    173716 23 + 155549662 -GGGGAA-GCTGGGCCCACCCACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91328 24 +    105888 -GGGGAAGGCCGGGACCACCCACCA
i panPan2.chrUn_NW_014024225v1 C 0 I 37
s gorGor5.CYUI01015925v1          120302 22 +    417917 -GGG--AGGCTGGGCCCACCCACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37628 23 + 141252148 -GGGGAA-GCTGGGCCCTCCCACCC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108456 22 + 149150640 -GGGGAA-GCTGGGGCC-CCCACCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694919 22 - 171882078 -GGGGAA-GCTGGGGCC-CCCACCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162931 22 +  25972781 -GGGGAA-GCTGGGACC-CCCACCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115724 22 -   1025902 -GGGGAA-GCCGGGACC-CCCACCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101967 22 -    811265 -GGGGAA-GCTGGGGCC-ACCACCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182694 23 +   1230721 -GGGGAA-GCTGGGGCCACCCACCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35601 23 +   2853901 -GTGGGA-GTTGGGCCCACCCGCCC
i calJac3.chrY                 I 18 C 0
s saiBol1.JH378345                133212 23 +    465904 -AGGGAA-GCTGGGCCCACCCGCCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97631 24 +  11138919 AAGGTGG-GTGGGGCTTGGCCACCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=903912.000000
s hg38.chrX_KI270880v1_alt         52271 142 +    284869 TGGGCACTAATAGACGAG--AGATGG---AACAAACAACACAACCACCC----CATGCGGGCACAGaagatttacaagcttaatctcatggacagaaatagactcggccccagcacagctgcagagcacacattcttttcaac-acacacag-
s panTro5.chrX                    173739 142 + 155549662 CGGGCACTAATAGACGAG--AGACGG---AACAAACAACACAACCACCC----CATGCGGGCACGGGAGatttccaagtttaatctcatggacagaaacagactcagccccagcacagctgcagagcacacattcttttcaac-acacacag-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91389 142 +    105888 CGGGCACTAATAGACGAG--AGACGG---AACAAACAACACAACCACCC----CATGCGGGCACGGGAGatttacaagtttaatctcatggacagaaatagactcggccccagcacagctgcagagcacacattcttttcaac-acgcacag-
i panPan2.chrUn_NW_014024225v1 I 37 C 0
s gorGor5.CYUI01015925v1          120324 141 +    417917 CGGGCACTAATAGACAAG--AGACGG---AACAAACAACACAACCACCC----CATGCGGGCACGGGAGatttacaagtttaatctcatggacagaaatagactcgg-cccagcacagctgcagagcacacattcttttcaac-acacacag-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37651 145 + 141252148 CGGGCACTAATAGACAAG--CGACAGAACAACAAACAACACAACCGCTC----CATGCGGGCACGGGAGatttacaaggttaatctcacggacagaaatagactcagcctcagcacagctgcagagcacacattcttttcaac-acacacag-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108478 142 + 149150640 TGGGCACCAACAGACGAG--AGACGGAACAACAAACAGCACAGCCACC-----CATGCAGGCTCGG--Gatttacaagtttaatctcacggacagaaatagactcggccccagcacagctgcagggcacacattcttttcaac-acgcacag-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171694941 142 - 171882078 TGGGCACCGACAGACGAG--AGACGGAACAACAAACAGCACAGCCACC-----CATGCAGGCTCGG--Gatttacaagtttaatctcacggacagaaatagactcggccccagcacagctgcagggcacacattcttttcaac-acgcacag-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          162953 142 +  25972781 TGGGCACCAACAGACAAG--AGACGGAACAACAAACAGCACAGCCACC-----CATGCAGGCacgg--gatttacaagtttaatctcacggacagaaatagactcggccccagcacagctgcagggcacacattcttttcaac-acgcacag-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115746 144 -   1025902 TGGGCACCGACGGACGAG--AGACGGAACAAGAAACAGCACAGCCACC-----CATGCGGGCACGGGAGatttacacgtttaatctcacggacagaaatagactcggccccagcacagctgcagggcacacattcttttcaac-acgcacag-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        101989 144 -    811265 TGGACACCAACAGACGAG--AGACGGAACAACAAACAGCACAACCACC-----CATGCGGGCACTGGAGatttacaagtttaatctcacggacagaaatagactcggccccagcacagctgcagagcacacattcttttcaac-acgcacag-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182717 145 +   1230721 TGGGCACCAATCGACGAG--AGACGGAACAACAAACAACACAGCCACCG----CATGCGGGCACGGGAGatttacaagtttaatctcacggacagaaatagactcagccccagcacagctgcagagcacacattcttttcaac-acacacgg-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     35624 149 +   2853901 CGGGCACCAACAGAGGAG--AGACGGAACAAGAAACAGCCCCAGCACCCCGAGCTCGCGGGCCCGGGAGATTTACAAGTTTAATCTCCGGGCCATAAATAGACCCGGCCCCGGCACAGCTGCAGAGCACACATTCCTTTCAAC-ACACACAG-
i calJac3.chrY                 C 0 I 442
s saiBol1.JH378345                133235 149 +    465904 CGGGCACCAATAGAGGAC--AGACGGAGCAAGAAACAGCCCGGGCACCCCAAGCTCGCGGGCCCTGGAGATTTACAAGTTTAATCTCCGGGACATAAATAGACCCGGCCCCAGCACAGCTGCAGAACACACATTCCTTTCAAC-ACACACAG-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97655 145 +  11138919 CAGGCACCAACATACAGAGCAGACCGGACAACAAA-AACAAAACCACTC----AGTAAGGGCACAGG-GATTTACAAGTTCAGTCTCACGTCCATAAATAGACCTGGCACCAGCTCAGCTGCAGGACACACATTC--TTCAGCGACATACAGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=21478.000000
s hg38.chrX_KI270880v1_alt         52413 6 +    284869 ctcact--
s panTro5.chrX                    173881 6 + 155549662 ctcact--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91531 6 +    105888 ctcact--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120465 6 +    417917 ctcact--
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37796 6 + 141252148 ctcact--
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108620 6 + 149150640 cgcact--
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695083 6 - 171882078 cgcact--
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163095 6 +  25972781 cgcact--
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115890 6 -   1025902 cgcact--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102133 6 -    811265 cgcact--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182862 6 +   1230721 tgcact--
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                133384 6 +    465904 GGCGCT--
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97800 6 +  11138919 --CACGGC
i otoGar3.GL873584             C 0 C 0
e calJac3.chrY                     35773 442 +   2853901 I
e manLeu1.NW_012108508v1           15056 54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=1438732.000000
s hg38.chrX_KI270880v1_alt         52419 302 +    284869 tgggaactggccacctctcgggctgagctgc-aggtctcagggggttctgaag--gaATCACAGGGACTGCTGCCCTGCCCCAAACGTAGCCGGTGAGGCCAGGCATCTACGG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGCATGTATG----TGGAAGAAGAATTCTAAAGCCAGCCGCCTGTTCATTAAAAAGTTCAGACAAACCAGAG-GGGCCTGTGGCGGCCAGGTCAT-CCACTTTAAATCCTCCTCAGTACGTGTACTTTAAAAAGAACTTCGTAAAGAGCCCGTCACCCAAAGCGCACTGATAA
s panTro5.chrX                    173887 299 + 155549662 tgggaactggccacctctcgggccgagcagc-aggtctcaggggattctgaag--gaATCACAGGGACTGCTGCCCTGCCCCGAATGTAGCCGGTGAGGCCAGGCATCTACGG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGCGTGTGTG----TGGAAGAA---TTCTAAAGCCAGCCGCCTGTTCATTAAAAAGTTCAGACAAACCAGAG-GGACCTGTGGCGGCCAGATCAT-CTACTTTAAATCCTCCTCAGTACGTGTACTTTAAAAAGTACTTCGTAAAGCGCCCGTCACCCAAAGCACACTGATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91537 291 +    105888 tgggaactggccacctctcgggccgagcagc-aggtctcagggggttctgaag--gaATCACAGGGACTGCTGCCCTGCCCCGAACGTAGCCGGTGAGGCCAGGCATCTACGG--TAAACACAGGAGGAGCAAAAACAGC--------------------TGCGTGTGCG----TGGAAGAAGAATTCTAAAGCCAGCCGCCTGTTCATTAAAAAGTTCAGACAAACCAGAG-GGGCCTGTGGGGGCCAGGTCAT-CCACTTTAAATCCTCCTCGGTACGTGTACTTTAAA-----------AAAGCGCCCGTCACCCAAAGCACACTGATAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120471 302 +    417917 tgggaactggccacctctcgggctgagcagc-aggtctcagggggttctgaag--gaATCACAGGGACTGCTGCCCTGCCCCGAATGTAGCCGGTGAGGCCAGGCATCTACGG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGCGTGTGTG----TGGAAGAAGAATTCTAAAGCCAGCCGCCTGTTCATTAAAAAGTTCAGACAAACCAGAG-GGGCCTGTGGCAGCCAGGTCAC-CTACTTTAAATCCTCCTCGGTACGTGTACTTTAAAAAGAACTTCGTAAAGCGCCCGTCACCCAAAGCACACTGATAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     37802 299 + 141252148 tgggaactggccacctctccggccaagcagc-aggtctcaggggactctgaag--gaATCACAGGGCCTGCTGCCCTGCCCCGAATGTAGCCGGTGAGGCCAGGCATGAACAG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGCGTGTGTG----TGGAAGAA---TTCTAAAGCCAGCCGCCTGTTCATTAAAAAGTTCAGACAAACCAGAG-GGGCCTATGGCAGCCGGGTCAC-CCACTTTAAATCCTCCTCAGTACGTGGACTTTAAAAAGTACTTCGTAAAGCGCCCGTCACCCAAAGCACAGTGATAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108626 303 + 149150640 tgagaactggccgcctctcgggccgagcagcggggtctcattggactgtgaag--gaATCACAGGGACTGCGGCCCTGCCCCGAGCGTAGCCGGGGAGGCCAGGCATCCACGG--TAAACACACAAGGAGCAAAAACAGC--------------------TGCCGGGGTG----TGGAAGAAGAATTCTAAAGTCAGCTGCCTCCTCCTTAGAGTGTGGAGAGGAGACAAAGCCGCCCTCGGGCGGCCCGGCCAC-CCAC-TTAAATCCTCCTCCACACGTGGACTTTACAAGGTGCTTCGTCAAGCGCCCGCCACCCGAAACACACCGATCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695089 302 - 171882078 tgagaactggccgcctctcgggccgagcagc-aggtctcagtggactgtgaag--gaATCACAGGGACTGCGGCCCTGCCCCGAGCGTAGCCGGGGAGGCCAGGCATCCACGG--TAAACACACGAGGAGCAAAAACAGC--------------------TGCCGGGGTG----TGGAAGAAGAATTCTAAAGTCAGCTGCCTCTTCGTTAAACAGTTCAGACGAACCAGAG-GGGCCTTGGGCGGCCCGGCCAC-CCACTTTAAATCCTCCTCCACACGTGGAGTTTACAAAGTGCTCCGTCAAGCGCCCGCCACCCGAAACACACCGATCA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163101 302 +  25972781 tgagaactggccgcctctcgggccgagcagc-aggtctcagtggactgtgaag--gaATCACAGGGACTGCGGCCCTGCCCCGAGCGTAGCCGGGGAGGCCGGGCATCCACGG--TAAACACACAAGGAGCAAAAACAGC--------------------TGCCGGGGTG----TGGAAGAAGAATTCTAAAGTCAGCTGCCTCTTCGTTAAACAGTTCAGACGAACCAGAG-GGGCCTCGGGCGGCCCGGCCAC-CCACTTTAAATCCTCCTCCACACGTGGAGTTTACAAAGTGCTCCGTCAAGCGCCCGCCACCCGAAGCACACCGATCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          115896 304 -   1025902 tgggaactggccgcctctcgggccgagcagc-aggtctccgtggactctgaag--gaATCACAGGGACTGTGGCCCTGCCCCGAACGTAGCCGGGGAGGCCAGGCATCCACGGTTTAGACACACAAGGAGCAAAACCAGC--------------------TGCCGGGGTG----TGGAAGAAGAATTCTAAAGTCAGCTGCCTGTTCGTTAAACAGTTCAGACAAACCAGAG-GGGCCTCAGGCGGCCCGGTCAC-CCACTTTAAATCCTCCTCCACACGTGTACTTTACAAAGTGCTTCGTCAAGCGCCCGCCACCCGAAGCACACCGATAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102139 302 -    811265 tgggaactggccgcctctcgggccgagcagc-aggtctcagtggactctgaag--gaGTCACAGGGACTGCGGCCCTGCCCTGAACGTAGCCGGGGAGGCCAGGCATCCACGG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGTCTGTGTG----TGGAAGAAGAATTCTAAAGTCAGCTGCCTCTTCGTTAAACAGTTCAGACAAACCAGAG-GGGCCTCGGGCGGCCCGGTCAC-CCACTTGAAATCCTCCTCCACACGTGTACTTTACAAAGTGCTTCGTCAAGCGCCCGCCACCCAGAGCACACTGATAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          182868 302 +   1230721 tgggaactggtcgcctctggggcccagcggc-gggtctcagcggattctgaag--gGATCACAGGGACGGCGGCCCTGCCCCGAACGTAGCCGGGGAGGCCAGACGTCCGCGG--TAAACACAGAAGGAGCAAAAACAGC--------------------TGCCTGTGCG----GGGAAGAAGAATTCTAAAGTTAGCTGCCTCTTCGTTAAAACGTTCAGACGAACCAGAG-GGGCCTCGGGCGGCCCGGTCCC-CCACGTTCAATGGTCCTCAGCACCTGTCCTTTATAAAGCGCTCCGTAAAGCGCCCGCCACCCAAAGCACGCTGATAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36215 276 +   2853901 TGGGCAGCGGCCACCTCTCGGGC--GGCAGC-AGGTCTCCCTGGGCTCTGCAATTCAATCGCCCAGACAGCGGCCC-GCCCCGAACGGAGCCGCCG-GGCCAGGCATCAGCCG--CAAACACAGAAG--GACACGACAGC--------------------TGCGTGCGCG----TGGAAGAAGAATGCTGAAGTCA-CCGCCTCCTCAGTAAAA-AATAAGACAGACCGGAG-GGGCGCCTGGT--CCCAGGCAG-GCACTTTCCATCCTCCCCA------------------GCGCTTGGTAACGCACCTGTCACGCAGGGCACGGTGGTAG
i calJac3.chrY                 I 442 C 0
s saiBol1.JH378345                133390 293 +    465904 TGGGCAGCGGCCACGTCTCAGGC--GGCAGC-AGGTCTCGCCGGG-TCTGAAG--CCGTCGCGGAGCAGGCGGCCC-GCCCCGAACAGAGCCACCG-GGCCCGGCGTCAGCCG--CACACACAGGAGGCGGCGCGACAGC--------------------TGCGTGCGCG----TGGAGGAAGAAT-CTGCAGTCAGCCGCCTCCTCGCTGAAACAGGAAGGCGGACCGGAG-GGGCGCCCGCT--CCCGGCCAG-GCCCCGTCCACCCTCCGCAGGGCG-GCACCTCGCGAGGCGCTGGGCGAAGCAGCTGTCACGCAGGGCACGCTGACAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 97806 282 +  11138919 TGGGAAATGGCCATTGCTCGGGC---------AGGTCTCAGGAGGCTCTGAAA--GTGTCA-------------GCTGCCCCGAGC------------TCCTTGCGTGTAGGG--CAGACGCCAGGGATGGAAATGCAGCCAGCAGTGTGCACGTGTGCATGCCTGTGTGTACCTGCAAAAACCATTCTCAAGCAGGGTCCATCCTCA--AGGAAATTAGGACAAA-CACAG-GTGCACACAGTTGCCACGTCACTCCACCTCTAATCC----CACGGTGTGTACTGGACACA-TACTTCACAAGGTGCCTGT-GTACAGTGCAGGGTAA---
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056  54 -    350446 I
e cebCap1.NW_016107987v1          204659 551 -    735872 I

a score=385921.000000
s hg38.chrX_KI270880v1_alt         52721 55 +    284869 AGGCGACACCCTGACTCCCAACAAGCTATTTCTGTTGAGGGCACTGAGAA-GGCAG
s panTro5.chrX                    174186 55 + 155549662 AGGCAACACCCTGCCTCCCAACAAGCTATTTCTGTTGAGGGCACCGAGAA-GGCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91828 55 +    105888 AGACGACACCCTGCCTCCCAACAAGCTATTTCTGTCGAGGGCACCGAGAA-GGCAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120773 55 +    417917 AGGCGACACCCTGCCTCCCAACAAGCTATTTCTGTTGAGGGCACTAAGAA-GGCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38101 55 + 141252148 AGGCGACACCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACTGAGAA-GGCAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108929 56 + 149150640 AGGCGAGGCCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACGGAGACGGGCAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695391 55 - 171882078 AGGCGAGGCCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACGGAGAC-GGCAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163403 55 +  25972781 AGGCGAGGCCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACGGAGAC-GGCAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116200 55 -   1025902 AGGCGAGGCCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACGGAGAC-GGCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102441 55 -    811265 AGGCGAGGCCCTGCCTCCCGACAAGCTATTTCTGTTGAGGGCACTGCGAC-GGCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          183170 55 +   1230721 AGGCGACGCCCTGCCTTCCCACAAGCTATTTCTGTCGAGGGCACTGAGAA-GGCAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36491 55 +   2853901 AGGCGACACCCTGCCTCCCAGAGAGCTATTTCTGTTGAGGGCAGCGGGAA-GGCAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133683 54 +    465904 ACGCGACACCCTGCCTCCCAGAGAGCTATTTCTGTGGAGGGCACCGGG-A-GGCAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205210 55 -    735872 AGGCGACACCCTGCCTCCCAGAGAGCTATTTCTGTTGAGGGCACCGGGAA-GGCTG
i cebCap1.NW_016107987v1       I 551 C 0
s otoGar3.GL873584                 98088 35 +  11138919 AGACAACACCTAGTCTC--------------------AGAGAACTGAGAA-GATGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15056 54 -    350446 I

a score=4083.000000
s hg38.chrX_KI270880v1_alt         52776 4 +    284869 CTC-C-
s panTro5.chrX                    174241 4 + 155549662 CTC-C-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91883 4 +    105888 CTC-C-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120828 4 +    417917 TTC-C-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38156 4 + 141252148 CTC-C-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108985 4 + 149150640 CTC-C-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695446 4 - 171882078 CTC-C-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163458 4 +  25972781 CTC-C-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116255 4 -   1025902 GTC-C-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102496 4 -    811265 CTC-C-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15110 4 -    350446 CTC-C-
i manLeu1.NW_012108508v1       I 54 C 0
s colAng1.NW_012115411v1          183225 4 +   1230721 CTC-C-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36546 3 +   2853901 CTC---
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133737 3 +    465904 CTC---
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205265 4 -    735872 CTCC--
i cebCap1.NW_016107987v1       C 0 I 90
s otoGar3.GL873584                 98123 4 +  11138919 -TG-CA
i otoGar3.GL873584             C 0 C 0

a score=565003.000000
s hg38.chrX_KI270880v1_alt         52780 94 +    284869 CTGACTCATCACAATTCCAGAAGTCACAGATACATGTGTCGCCCTTCCAGAGTACACCCACAGTTTTGC-AAAACACGTCCATATACGACCAAAA
s panTro5.chrX                    174245 94 + 155549662 CTGACTCATCACAATTCCAGAAGTCACAGATACATGTCTCGCCCTTCCAGAGTACACCTACAGTTTTGC-AAAACACGTCCATATACGACCAAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91887 94 +    105888 CTGACTCATCACAATTCCAGAAGTCACAGATACATGTGTCGCCCTTCCAGAGTACACCCACAGTTTTGC-AAAACACGTCCATATACGACCAAAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120832 94 +    417917 CTGACTCATCACAATTCCAGAAGTCACAGATACATGTGTCGCCCTTCCAGAGTACACCCACAGTTTTGC-AAAACACGTCCATATACGACCAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38160 94 + 141252148 CTGACTCATCACAATTGCAGAAGTCACAGATATGTGTGTCGCCCTTCCAGAGTACGCCCACAGTTTTGC-AAAACATGTCCGTATACGACCAAAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    108989 92 + 149150640 CTGACTCGTCACAATTCCAGTGGCCACAGATA--TGTGTCGCCCTCCCACAGCACACCCACAGTGTTGC-AAAACACGTCCATATACGACCAAAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695450 92 - 171882078 CTGACTCGTCACAATTCCAGTAGCCACAGATA--CGTGTCGCCCTCCCACAGCACACCCACAGTGTTGC-AAAACACGTCCATATACGACCAAAC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163462 92 +  25972781 CTGACTCGTCACAATTCCAGTAGCCACAGATA--TGTGTCGCCCTCCCACAGCACACCCACAGTGTCGC-AAAACACGTCCATATACGACCAAAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116259 92 -   1025902 CTGACTCATCACAATTCCAGAAGCCACAGATA--TGTGTCGCCCTCCCAGAGCACACCCACAGTTTTGC-AAAACACGTCCATATACGACCAAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102500 92 -    811265 CGGACTCGTCACAATTCCAGAAGCCACAGATA--TGTGTGGCCCTCCCAGAGCACACCCACAGTTTTGC-AAAACACGTCCGTATACGAGCAAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15114 92 -    350446 CTGACTCATCACAATTCCAGAAGCCACAGATA--TGTGTCGCCCTCCCAGAGCACACCCACAGTTTTGC-AAAACACGTCCATATACGACCAAAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183229 93 +   1230721 CTGACTCATCACAATTCCAGAAGTCACAGATG--TGTGTCGCCCTCCCAGAGCACACCCCCAGTTTTGCAAAAACACGTCCATATACGAGCAAAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36549 93 +   2853901 CTGACTCCAGGCAGTTCCACAGGTCACAGATACGCGTCTGACCCTTCCCGAGCACAGT-GTGACTTAGG-AAAGCACGTGCCTGCAGCAGCAGAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133740 91 +    465904 CTGACTCGCTGCAGTTCCAC-GGTCACAGACGCCGCGCTGACCCCTCCAGAGCACAGC-ACGGTGTACG-AAA-CACGTGCACGCGCCGGCCAAC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98127 75 +  11138919 CTGACTCCTGGCAACTCCA-AAATCCCAGACA------------------GGTATGGACACGGTCTTGC-AAAACATGTCCATAAACAACTAAAA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          205269 90 -    735872 I

a score=162484.000000
s hg38.chrX_KI270880v1_alt         52874 24 +    284869 ---ACAAAGGCTGAGCCTAACACTG--AG
s panTro5.chrX                    174339 24 + 155549662 ---ACAAAGGCTGAGCCTAACACTG--AG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     91981 24 +    105888 ---ACAAAGGCTGAGCCTGACACTG--AG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120926 24 +    417917 ---GCAAAGGCTGAGCCTAACACTG--AG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38254 24 + 141252148 ---GCAAAGGCTGAGCCTAACGCTG--AG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109081 24 + 149150640 ---ACAAAGGCTGAGCCTAACACCG--AT
i rheMac8.chrX                 C 0 I 19
s macFas5.chr7                 171695542 26 - 171882078 ---ACAAAGGCTGAGCCTAACACCGATAT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163554 24 +  25972781 ---ACAAAGGCTGAGCCTAACACCG--AT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116351 22 -   1025902 ---ACAAAGGCTGAGCCTA--ACCG--AT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102592 24 -    811265 ---ACAAAGGCTGAGCCTAACACCG--AT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15206 24 -    350446 ---ACATAGGCTGAGCCTAACACCG--AT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183322 24 +   1230721 ---ACAAAGGCTGGGCCTAACACCG--AC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36642 24 +   2853901 ---TCAACGCCTCAGCCCGACACGG--AC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133831 24 +    465904 ---ACAAAGCCTGGGCCTGACACGG--AC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205359 24 -    735872 ---ACAAAGCCTCAGCCTGACACGG--AC
i cebCap1.NW_016107987v1       I 90 C 0
s otoGar3.GL873584                 98202 26 +  11138919 AAAGTAAAGCCTTGGCATAAAACAA--A-
i otoGar3.GL873584             C 0 C 0

a score=69771.000000
s hg38.chrX_KI270880v1_alt         52898 16 +    284869 GCTGCCTGTTTTTGCG
s panTro5.chrX                    174363 16 + 155549662 GCCGCCTGCCTTTGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92005 16 +    105888 GCTGCCTGTTTTTGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120950 16 +    417917 GCTGCCTGTTTTTGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38278 16 + 141252148 GCTGCCTGTTTTTGCG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171695568 16 - 171882078 GCCGCCTGTTGCAGAA
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          163578 16 +  25972781 GCCGCCTGTTGCAGAA
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1          116373 16 -   1025902 GCCGCCTGTTTCTGCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102616 12 -    811265 GCCGCCTGTTTT----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15230 12 -    350446 GCCACCTGTTTC----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183346 12 +   1230721 GCCGCCTGTTTC----
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36666 16 +   2853901 GCGGCCTGCTTTTGTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133855 16 +    465904 GCGGCCCGTTTGTGTG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205383 16 -    735872 GCGGCCTGTTTTTGTG
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 98228 14 +  11138919 --TGTCTCTTTCTGCA
i otoGar3.GL873584             C 0 C 0
e rheMac8.chrX                    109105 19 + 149150640 I

a score=24584.000000
s hg38.chrX_KI270880v1_alt         52914 14 +    284869 TAGAAG----TGCGTGCG
s panTro5.chrX                    174379 14 + 155549662 TAGAAG----TGCGTGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92021 14 +    105888 TAGAAG----TGCGTGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120966 14 +    417917 TAGAAG----TGCGTGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38294  9 + 141252148 TAGAAG----TGC-----
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109124 14 + 149150640 CAGAAATTCAA----GCG
i rheMac8.chrX                 I 19 C 0
s macFas5.chr7                 171695585 18 - 171882078 CAGAAATTCAAGCGTGCG
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          163595 18 +  25972781 CAGAAATTCAAGCGTGCG
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1          116389  4 -   1025902 --------------TGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102628  8 -    811265 ----------TGCGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15242  8 -    350446 ----------TGCGCGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183358  8 +   1230721 ----------TGCGTGCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36682 14 +   2853901 CACAAG----TGCCCGCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133871 14 +    465904 CACAAG----TGCGTGTG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205399 14 -    735872 CAGAAG----TGCGTGCG
i cebCap1.NW_016107987v1       C 0 I 67
s otoGar3.GL873584                 98242 14 +  11138919 TAGCTA----TGAGTGCC
i otoGar3.GL873584             C 0 C 0

a score=336877.000000
s hg38.chrX_KI270880v1_alt         52928 70 +    284869 CTTGATGGGTGCAGGTGAGTGTACCCCGAGAACA----CAGGCCACGTGC--ACCGTGACACATCCT-CTCGCGACA
s panTro5.chrX                    174393 70 + 155549662 CTTGATGGGTGCAGGTGAGTGTACCCCGAGAACA----CGGGCCATGTGC--ACCGTGACACATCCT-CTCGCGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92035 70 +    105888 CTTGATGGGTGCAGGTGAGTGTACCCCGAGAACA----CGGGCCACGTGC--ACCGTGACACATCCT-CTCGCGACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          120980 70 +    417917 CTTGATGGGTGCAGGTGAGTGTACCCCGAGAACA----CGGGCCACGTGC--ACCGTGACACATCCT-CTCGCGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38303 61 + 141252148 -------GGTGCAGGTGA--GTACCCTGAGAACA----CAGGCCACGTGC--ACCGTGACACATCAT-CTCGCGACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109138 68 + 149150640 CTTGATGAGTGCAGGTGA--ATTTCCCGAGAACA----CAGGCCACGTGCA-ACTGTCACACGTCCT-CTGGCGAC-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695603 68 - 171882078 CTTGATGAGTGCAGGTGA--ATTTCCCGAGAACA----CAGGCCACGTGCA-ACCGTCACACGTCCT-CTGGCGAC-
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163613 69 +  25972781 CTTGATGAGTGCAGGTGA--ATTTCCCGAGAACA----CAGGCCACGTGCA-ACCGTCACACGTCCT-CTGGCGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116393 69 -   1025902 CTTCATGGGTGCAGGTGA--GTTCCCGGAGAACA----CAGGCCACGTGCA-ACTGTCACACGTCCT-CTGGCGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102636 69 -    811265 CTTCATGGGTGCAGGTGA--GTCCCCAGAGAACA----CAGGCCACGTGCA-ACTGTCACACGTCCT-CTGGGGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15250 69 -    350446 CTTCATGGGTGCAGGTGA--GTTCCCGGAGAACA----CAGGCCACGTGCA-ACTGTCACAGGTCCT-CTCGCGACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183366 69 +   1230721 CTTCCTGGGTGCAGGTGA--GTTCCCTGAGAACA----CGGGCCACGTGCA-ACTGCCACACGTCCT-CTCGCGACA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36696 62 +   2853901 -TGTCAGGGTGCAGGAAA--GTTCCACT---ACA----CAGGTCGTGAGT--GCCGCGACAGGTCCT---GAGGATG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133885 67 +    465904 -TGGCAGGGTGCGGGTAC--GTTCCACGGGAACA----CAGGTCGCGAGG--GCCGTGACCGGTCCT-CCGAGGACG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98256 73 +  11138919 CCTTAAGGGGGCAGAGAC--AGTCCACAAGGAAGTAGCCAGGTCGAATGCAGGTGGTCACACCTCTTCCTGACCA--
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          205413 67 -    735872 I

a score=497929.000000
s hg38.chrX_KI270880v1_alt         52998 79 +    284869 CCAGCCTCGGGCAG-ACCCCCGCATGTGCAGAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCAGCAGAAATGACCCTCG
s panTro5.chrX                    174463 79 + 155549662 CCAGCCTCGGGCAG-ACCCCCGCATGTGCAGAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCAGCAGAAATGACCCTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92105 79 +    105888 CCGGCCTCGGGCAG-ACCCCCGCGTGTGCACAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCAGCAGAAATGGCCCTCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121050 79 +    417917 CCAGCCTCGGGCAG-ACCCCCGCATGTGCAGAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCAGCAGAAATGACCCTCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38364 79 + 141252148 CCAGCCTCGGGCGG-ACCCCCACACGTGCAGAGGGTGTGCACAGCAGGC--AGGGCGCGGTGACCAGCAGAAATAACCCTCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109206 65 + 149150640 ---------------ACCCCCGCGTGTGCAGAGGGTGCGCACAGCAGGC--CGGGCGCGGTGACCAGCAGGAAGGACCCTCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695671 65 - 171882078 ---------------ACCCCCGCGTGTGCAGAGGGTGCGCACAGCAGGC--CGGGCGCGGTGACCAGCAGGAAGGACCCTCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163682 80 +  25972781 CCAGCCGCGGGCGGGACCCCCGCGTGTGCAGAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCAGCAGGAAGGACCCTCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116462 82 -   1025902 CCAGCCGCGGGCGGGACCCCCGCGTGTGCAGAGGGTGCGCACAGCAGGCAGAGGGCGCGGTGACCAGCAGGAAGGACCCTCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102705 80 -    811265 CCAGCCGCGGGCGGGACCCCCGCGTGTGCAGAGGGTGCCCACGGCAGGC--CGGGCGCGGTGACCAGCAGGAAGGACCCTCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           15319 82 -    350446 CCAGCCGTGGGCGGGACCCCCGCGTGTGCAGAGGGTGCGCACAGCAGGCAGAGGGCGCGGTGACTGGCAGGAAGGACCCTCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183435 80 +   1230721 CCCGCCGCGGGCGCGACCCCCGCGTGGGCAGAGGGTGCGCACAGCAGGC--AGGGCGCGGTGACCGGCACAAAGGACCCTCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36758 80 +   2853901 CCAGGCTCGGGCAGGCCCCCCGAGTGCGCACAGGGTGAGCACAGCAGGC--GGCGTGCGGCAACACGCAGACACGGCCCTCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133952 26 +    465904 CCA--------------------------------------------------------GCAACACGCAGAAACGACCCTCG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205480 80 -    735872 CCAGCCTCGGGCAGGCCCCCCGAGTGGGCAGAGGGTGAGCACAGCAGTC--GGGGTGCGGTAACACGCAGAAACGACCCTCG
i cebCap1.NW_016107987v1       I 67 I 113
s otoGar3.GL873584                 98329 78 +  11138919 CTTGCCTCAGTGAG-ACACCTGGGTATCCCCTGAGTGAGCATGAGAGG---AGTTTGCTATGATGATCAGAATGGACCCCCA
i otoGar3.GL873584             C 0 C 0

a score=612453.000000
s hg38.chrX_KI270880v1_alt         53077 108 +    284869 CCCCCACGGCAGCAGGACCGGACACCACGATCAAAGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGGACGCTCAGTACGGGCTGCAACGCACAGCCG
s panTro5.chrX                    174542 108 + 155549662 CCCCAACGGCAGCAGGACCGGACACCATGATCAAAGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTACAGGCTGCAACGCACAGCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92184 108 +    105888 CCCCAACTGCAGCAGGACCGGACACCACGATCAAAGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTACAGGCTGCAACGCACAGCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121129 108 +    417917 CCCCAACGGCAGCAGGACCGGACACCACGATCAAAGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTACAGGCTGCAACGCACAGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38443 108 + 141252148 CCCCGACTGCAGCAGGAGCGGACACCACGATCAAAGCCACAGAGAAGGTGCCGGAGAAGCACGGGGCCGGCGGAAGGCACGCTCAGTACAGGCTGCAACGCACAGCCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109271 108 + 149150640 CCCCAACCCCAGCGGCACCAGACACCACGGTCAAGGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTAGAGGCTGCAACGCACAGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695736 108 - 171882078 CCCCAACCCCAGCGGGACCAGACACCACGGTCAAGGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTAGAGGCTGCAACGCACAGCCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163762 108 +  25972781 CCCCAACCCCAGCGGCACCAGACACCACGGTCAAGGCCACAGGGGAGGTGCCGGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTAGAGGCTGCAACGCACAGCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116544 108 -   1025902 CCCCAACCCCAGCGGGACCAGACACCACGGTCAAGGCCACAGAGGAGGTGCCAGAGCAGCAGGGGGCCGGCGGAAGGCACGCTCAGTAGAGGCTGCAACGCACAGCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102785 107 -    811265 CCCCAACCCCAGCAGCACCAGACACCACGGTCAAGGCCTCAGAGGAGGTGCCGGAGCAGCA-GGGGCCGGCGGAAGGCACCCTCAGTAGAGGCTGCAACGCACAGCCG
i chlSab2.chrUn_KE147541v1     C 0 I 14
s manLeu1.NW_012108508v1           15401 108 -    350446 CCCCGACCCCAGCAGCACCAGACACCACGGTCAAGGCCACAGAGGAGGTGCCGGAGCAGCAGGGGGCCAGCGGAAGGCACGCTCAGTAGAGGCTGCAACGCACAGCCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          183515 107 +   1230721 CCCCAACCCCCGCAGGACCAGACACCACGGTCAAGGCCACAGAGGAGGTGCCGGAGCAGCA-GGGGCCGGCGGAAGGCACGCTCCGTAGAGGCTGCAACGCACCGCCA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36838  53 +   2853901 TGCCAACCCCAGCGGGACCGGACGGCCGGCTCACGGCCACAGAGGAGGCTCTG-------------------------------------------------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                133978  53 +    465904 TGCCCACCCCGGCGGGACGGGAGGGCGGGCTCGCGGCCACAGAGGACGCTTCG-------------------------------------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98407  88 +  11138919 CTCTTGCCCACACAAGACTGGACATTATGGCCAACATCACACAGAAGGTGACA---TCACAGGAGGC-----AAAGGTATTCTCAGTACAGGGTGA------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          205560 113 -    735872 I

a score=243251.000000
s hg38.chrX_KI270880v1_alt         53185 71 +    284869 TG-CCC-----CCAGGAGCCCC-CGCTCTGCAGCGGCCCCCACTCTGCAGCGGGAGGCGGAAGCACGGGAGGCTGTGG
s panTro5.chrX                    174650 54 + 155549662 TG-CCC-----CCAGGAGCCCC-CGCTCTGCAGCAG-----------------GAGGCGGAAACACGGGAGGCTGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92292 71 +    105888 TG-CCC-----CCAGGAGCCCC-TGCTCTGCAGCGGCCCCCACTCTGCAGCGGGAGGCGGAAGCACGGGAGGCTGTGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121237 70 +    417917 TG-CCC-----CCAGGGG-CCC-TGCTCTGCAGCGGCCCCCACTCTGCAGCGGGAGGCGGAAGCACGGGAGGCTGTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38551 71 + 141252148 TG-TCC-----CCAGGAGCCCT-CACTCTGCAGCGGCCTCTACTCTGCAGCGGGAGGCGGAAGCATGGGAGGCTGTGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109379 54 + 149150640 TG-TCC-----CCAGGAGCCCC-CAGCCTGCAGCGC-----------------GAGGCGGAAGCACGGGAGGCTGTGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695844 54 - 171882078 TG-TCC-----CCAGGAGCCCC-CAGCCTGCAGCGC-----------------GAGGCGGAAGCACGGGAGGCTGTGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163870 54 +  25972781 TG-TCC-----CCAGGAGCCCC-CAGCCTGCAGCGC-----------------GAGGCGGAAGCACGGGAGGCTGTGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116652 54 -   1025902 TG-TCT-----CCAGGAGCCCC-CAGCCTGCAGCGC-----------------GAGGCGGAAGCACGGGAGGCTGTGG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           15509 54 -    350446 TG-TCC-----CCAGGAGCCCC-CACTCTGCAGCGG-----------------GAGGCGGAAGCACGGGAGGCTGTGG
i manLeu1.NW_012108508v1       C 0 I 6708
s colAng1.NW_012115411v1          183622 55 +   1230721 TG-TCC-----GCAGGAGCTCCGGACTCCGCAGCCG-----------------GAGGCGGAAGCGTGGGAGGCTGTGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36891 49 +   2853901 TG-CTT-----CCTGGTGCCCA-----CTTCAGACG-----------------GCGCTGGAAGCACAGCA-GCTGTGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134031 50 +    465904 TGCCTT-----CCCGGGGCCCT-----CTTCAGATG-----------------GAGTCGGAAGCACGGCA-GCTGTGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98495 56 +  11138919 TG-CCCCTAGTCCAGATGCCCC-TACTTGGGACT-------------------CAGTATGAAGCACGGGC-CCTGTGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          205560 113 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I

a score=11835.000000
s hg38.chrX_KI270880v1_alt         53256 16 +    284869 TATGGAATCAGGGACG
s panTro5.chrX                    174704 16 + 155549662 TATGGAATCAGGGACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92363 16 +    105888 TATGGAATCAGGGACG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121307 16 +    417917 TATGGAATCAGGGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38622 16 + 141252148 TATGGGATCAGGGAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109433  8 + 149150640 GATGGGA--------G
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695898  8 - 171882078 GATGGGA--------G
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163924  9 +  25972781 GAAGGGAT-------G
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116706  9 -   1025902 GATGGGAT-------G
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          183677  9 +   1230721 GACGGGAT-------G
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     36940  9 +   2853901 AATGGGAT-------G
i calJac3.chrY                 C 0 I 1
s saiBol1.JH378345                134081  9 +    465904 TGTGGGAT-------G
i saiBol1.JH378345             C 0 I 1
s otoGar3.GL873584                 98551 11 +  11138919 TATGGGGCTTG-----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205560 113 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I

a score=548873.000000
s hg38.chrX_KI270880v1_alt         53272 84 +    284869 GGGGG-TTTGGCCGGGACGCACACTCATGGATTCCAGCTGAGCCCCTCGCCCACCCAGATGACGGCCACC----CCCTGGAAGGCAGGG
s panTro5.chrX                    174720 85 + 155549662 GGGGGGTTCGGCCGGGACCCACACTCATGGATTCCAGCTGAGCCCCTCGCCCACCCAGATGATGGCCACC----CCCTGGAAGGCAGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92379 84 +    105888 GGGGG-TTCGGCCAGGACCCACACTCATGGATTCCAGCTGAGCCCCTCGCCCACCCAGATGACGGACACC----GCCTGGAAGGCAGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121323 85 +    417917 GGGGGGTTCGGCCGGGACCCACACTCATGGATTCCAGCTGAGCCCCTCGCCCACCCAGATGACGGCCACC----CCCCGGAAGGCAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38638 84 + 141252148 GGGGGGTTCGGCCAAGACCCACACTCATGGATTCCAGCTGAGCCCCTCGCCCACCCAAATGACAGCCACC-----CCTGGAAGGCAGGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109441 85 + 149150640 GAGGGGTTCGGCCGGGACCCACACTCATGGACTCCAGCTGAGCCCGTTGCCCACCCAGATGGCGGCCACC----CCCTGGAAGGCAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695906 85 - 171882078 GAGGGGTTCCGCCGGGACCCACACTCATGGACTCCAGCCGAGCCCCTTGCCCACCCAGATGGCGGCCACC----CCCTGGAAGGCAGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          163933 85 +  25972781 GAGGGGTTCCGCCGGGACCCACACTCATGGACTCCAGCAGAGCCCCTCGCCCACCCAGACGGCGGCCACC----CCCTGGAAGGCAGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116715 85 -   1025902 GAGGGGTTCGGCCGGGACCCACACTCATGCACTCCAGCTGAGCCCCTCGCCCACCCAGATGGCGGCCACC----CCCTGGAAGGCAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          183686 85 +   1230721 GAGGGGTTGGGCCGGGACCCACGCTCATGGATTCCAGCTCAGCCCCTCGCCCACCCAGATGGCGGCCACC----CCCCGGAAGGCAGGG
i colAng1.NW_012115411v1       C 0 M 466
s calJac3.chrY                     36950 84 +   2853901 -GGGGGTTCGGGCAGGACCCACACTCACGGATTCCGGCCGAGCCCCTCGCCCACCCAGCCGACGGCCACC----ACCTGGAAGGCAGGG
i calJac3.chrY                 I 1 C 0
s saiBol1.JH378345                134091 84 +    465904 -GGGGGTTCGGGCAGGACCCACACTCACAGATTGCAGCTGAGCCCCTCGCCCACCCAGCTGACGGCCACC----ACCTGGGAGGCAGGG
i saiBol1.JH378345             I 1 C 0
s cebCap1.NW_016107987v1          205673 84 -    735872 -GGGGGTTCGGGCAGGACCCACACTGACGGATTCCAGCCGAGCCCCTCGCCCACCCAGCCGACGGCCACC----GCCTGGCAGGCAGGA
i cebCap1.NW_016107987v1       I 113 C 0
s otoGar3.GL873584                 98562 81 +  11138919 -GGGAGTTTAGCAGGGA------CTCGTGGATTGCAGGTGAATCTGTTATCCGCCCAGAAGATGGCCACCACCACCCTGGAGGGAGGG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I

a score=76548.000000
s hg38.chrX_KI270880v1_alt         53356 13 +    284869 CCTGCTGCAAGCT
s panTro5.chrX                    174805 13 + 155549662 CCTGCTGCAAGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92463 13 +    105888 CCTGCTGCAAGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121408 13 +    417917 CCTGCTGCAAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38722 13 + 141252148 CCTGCTGCAAGCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109526 13 + 149150640 CCCGCTGCAAGCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171695991 13 - 171882078 CCCGCTGCAAGCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          164018 13 +  25972781 CCCGCTGCAAGCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          116800 13 -   1025902 CCCGCTGCAAGCT
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     37034 13 +   2853901 CCTGCTGCAAGCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134175 13 +    465904 CCTGCCACAAGCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          205757 13 -    735872 CCTGCTGCAAGCT
i cebCap1.NW_016107987v1       C 0 I 775
s otoGar3.GL873584                 98643  9 +  11138919 TCTGCTGTA----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M

a score=841637.000000
s hg38.chrX_KI270880v1_alt         53369 219 +    284869 CTGAGCATTCTTCTCGGCCCAGCACTTGACTCCCAGGGACCCTCTGAGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCAAACCGCACGCTGGACGGCTAAACACAGGAGTCAAAAAGGTCGGTGTTTACACAGAGGAGCCGAACACGGAGATGAG-------AGGCCCCACGTGTGGGTTTAAAAATCCCCTCTCTAGCAAAGAGGGAGAACTGGTGTGGAGGG
s panTro5.chrX                    174818 219 + 155549662 CTGAGCATTCTTCTCGGCCCAGCACTCGACTCCCAGGGACCCTCCGAGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCAAACCACACGCTGGACGGCTAAACACAGGAGTCAAAAAGGTCGGTGTTTACACAGAGGAGCCGaacacggagatgag-------aggccccgcgtgtgggtttaaaaatcccctctctagcaaagagggagaactggtgtggaggg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92476 219 +    105888 CTGAGCTTTCTTCTCGGCCCAGCAGTCGACTCCCAGGGACCCTCCGCGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCAAACCACACGCTGGACAGCTAAACACAGGAGTCAGAAAGGTCGGTGTTTACACAGAGGAGCCGaacacggagatgag-------aggccccgcgtgtgggtttaaaaatcccctctctagcaaagagggagaactggtgtggaggg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121421 219 +    417917 CTGAGCATTCTTCTCGGCCCAGCACTCGACTCCCAGGGACCCTCTGAGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCAAACCACACGCTGGACGGCTAAACACGGGAGTGAAAAAGGTCGGTCTTTACACAGAGGAGCCGAACACGGAGATGAG-------AGGCACCGCGTGTGGGTTTAAAAATCCCCTCTCTAGCAAAGAGGGAGAACTGGTGTGGAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38735 219 + 141252148 CTGAGCATTCTTCTCGGCCCAGCACTCGACTCCCAGGGACCCTCCGCGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCTAACCGCACGCTGGACGGCTAAACACAGGAGTCAAAAAGGTCGGTGTTTACACAGAGGAGCCGAACACGGAGATGAG-------AGGCCCCGCGTGTGGGTTTAAAAATCCCCTCTGTAGCAAAGAGGGAGAACTGCAGTGGAGGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109539 224 + 149150640 CTGAGCATTCTTCTCCGCCCAGCACTCGACTCCCAGGGACCCTCTGCGAGGGCTGGTAGAGCG-CTGCCAGCTACACCTGCAAACCACACGCCGGACGGCTAAACAC-GGAGTCAAAAACGTCGGTGTTTACACAGAGGAGCCGAACACGGAGGCGAGAGAGT-CAGGCCCCACGTGTGGGTTTAAAAATCCCCTCTCTAGCAAAGACGGAGAACCGCTGTGGAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696004 224 - 171882078 CTGAGCATTCTTCTCCGCCCAGCACTCGACTCCCAGGGACCCTCTGCGAGGGCTGGTAGAGCG-CTGCCAGCTACACCTGCAAACCACACGCCGGACGGCTAAACAC-GGAGTCAAAAACGTCGGTGTTTACACAGAGGAGCCGAACACGGAGGCGAGAGAGT-CAGGCCCCGCGTGTGGGTTTAAAAATCCCCTCTGTAGCAAAGACGGAGAACCGCTGTGGAGGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          164031 224 +  25972781 CTGAGCATTCTTCTCCGCCCAGCACTCGACTCCCAGGGACCCTCTGCGAGGGCTGGTAGAGCG-CTGCCAGCTACACCTGCAAACCACACGCCGGACGGCTAAACAC-GGAGTCAAAAACGTCGGTGTTTACACAGAGGAGCCGAACACGGAGGCGAGAGAGT-CAGGCCCCGCGTGTGGGTTTAAAAATCCCCTCTCTAGCAAAGACGGAGAACTGCTGTGGAGGG
i macNem1.NW_012017243v1       C 0 I 1035
s cerAty1.NW_012001098v1          116813 224 -   1025902 CTGAGCATTCTTCTCCGCCCAGCACGCGACTCCCAGGGACCCTCTGCGAGGGCTGGTAGAGGG-CTGCCAGCTACACCTGCAAACCACACGCCGGACGGCTAAACAC-GGAGTCAAAAACGTCGGCGTTTACACAGAGGAGCCGAACACGGAGGCGAGAGAGT-CAGGCCCCGCGTGTGGGTTTAAAAATCCCCTCTCTGGCAAAGACGGAGAACTGCTGTGGAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     37047 200 +   2853901 GGGAGCATCCTTCTCGGCC--GCACGGGCCTCCCAGGGACCCTCCGTGAAGGCTGGTGGAAGG-CTGCCAGCGACACCCGCAAACGACATGCTACATGG-TAAACACGGGAGCCGGAAAGGTCAGCGTTCACCCACAGCAG-CCAACACGGAGATAACAGAGC-CGGGTGCCACGTGCAGGTTT--------------------ACAGGGAGAACTGGTGTGGAGG-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134188 214 +    465904 GGGAGCGTCCTTCTCGGCC--ACACGGGCCTCCCAGGGACCCTCCGTGAAGGCTGGTATAAGT-CTGCCAGCGACGCCTGC-AACGGCACGGTGCACGG-TAAACACGGGGGCCGGAAAGGTCAGCGTCTACCCAGAGGAG-TGAACACGGAGAC-ATAGAGC-CAGGGGCCACGTGGACGTTCATGA---TCCCCTCTATCCAACAGGGAGAACTGGGGTGG-GG-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98652 193 +  11138919 -------------------CAGAGCAAGCTCCCTCAGGCCCCTCCTAACGGTCTGGCAGGATGTCTGTCAACTACACTTGCCAATGACACATTGATTGG-GAAACA--GGAGTCA-AAAGGTAAATGCTTAAAACAGGCAGCAGAA-ATGGAGATGAGAAAGCGTAGG----------GAGGTTCACAGGCATCTCTCCAGCACGCCAAGGACACTGGTAGGAAGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892  14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M

a score=157638.000000
s hg38.chrX_KI270880v1_alt         53588 59 +    284869 -GTCAACACAGAAACGCAGCAGGTGC---AGGTGTCTGAGTAGGCCAGAGCT--------------CACGTGGGCTA
s panTro5.chrX                    175037 59 + 155549662 -gtcaacacagaaacgcagcaggtcc---aggtgtctgagttggccagagct--------------cacgtgggcta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92695 59 +    105888 -gtcgacacagaaacgcagcaggtcc---aggtgtctgagttggccagagct--------------cacgtgggcta
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121640 59 +    417917 -GTCAACACAGAAACGCAGCAGGTCC---AGGTGTCTGAGTTAGCCAGACCT--------------CACGTGGGCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     38954 59 + 141252148 -GTCAACACGGAAACGCAGCAGGTCC---AGGTGTCTGAGGTGGCCAGAGCT--------------CACGTGGGCTA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109763 58 + 149150640 -ATCAACACGGAAACGCAGCAGGTCC---AGGTGTCTGAGTCGGCCAGAGCT--------------CACG-GGGCTA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696228 58 - 171882078 -ATCAACACGGAAACGCAGCAGGTCC---AGGTGCCTGAGTCGGCCAGAGCT--------------CACG-GGGCTA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117037 58 -   1025902 -ATCAACACGGAAACGCAGCAGGTCC---AGGTGTCTGAGTCGGCCAGAGCT--------------CACG-GGGCTA
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     37247 49 +   2853901 -GTGGACACGGA--------AGGTCC---ACGTGTCTGAGTCCA--CCCACT--------------CATGTGGGCTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134402 51 +    465904 -GTGGACACGGA--------AGGTCC---ACGTGTCTGAGTCCACGCACACT--------------CACGTGGGCTA
i saiBol1.JH378345             C 0 I 169
s otoGar3.GL873584                 98845 76 +  11138919 GGTTGGTAGGGACACTT-TCAGGCCCACAAAGCCACTGAGGCTGACAGACTCAGAAGGGGCCACAGCAGGTGGACCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=63468.000000
s hg38.chrX_KI270880v1_alt         53647 28 +    284869 -----ACATTCACTCAGACACATGACTGCAGCC-----------
s panTro5.chrX                    175096 28 + 155549662 -----acaTTCACTCAGACACATGACTGCAGCC-----------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92754 26 +    105888 -----acaTTCACTCAGACAC--GACTGCAGCC-----------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121699 28 +    417917 -----ACATTCACTCAGACACATGACTGCAGCC-----------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39013 28 + 141252148 -----ACATTTACTCAGACACACGATTGCAGCC-----------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109821 28 + 149150640 -----ACGTTCACTCAGACACACGACCGCGGCC-----------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696286 28 - 171882078 -----ACGTTCACTCAGACACACGACTGCGGCC-----------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117095 28 -   1025902 -----ACGTTCACTCAGACACACGACTGCGGCC-----------
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     37296 27 +   2853901 -----ACACTCGATCGCACACAGGGCTGAGCC------------
i calJac3.chrY                 C 0 I 734
s saiBol1.JH378345                134622 27 +    465904 -----ACACTCGCTCACACACACGGCTGAGAT------------
i saiBol1.JH378345             I 169 I 10
s otoGar3.GL873584                 98921 44 +  11138919 GGGCTCCAACTGCTGCTGTACATCGCTGGGCCTCCCTCCCTCCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=68270.000000
s hg38.chrX_KI270880v1_alt         53675 31 +    284869 GAGCAACCGGGCCTCAACGGACGCTG-----AGAGA
s panTro5.chrX                    175124 31 + 155549662 GAGCAACCGGGCCTCAACGGACACTG-----AGAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92780 31 +    105888 GAGCAACCGGGCCTCAATGGATGCTG-----AGAGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121727 31 +    417917 GAGCAACCGGGCCTCAACGGACGCTG-----AGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39041 31 + 141252148 GGGCAGTGGGGCCACGACAGATGCTG-----AGAGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109849 31 + 149150640 GAGCCACGGGGCCTCGACGGACGCCG-----AGAGA
i rheMac8.chrX                 C 0 I 78
s macFas5.chr7                 171696314 31 - 171882078 GAGCCACGGGGCCTCGACGGACGCCG-----AGAGA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117123 31 -   1025902 GAGCCACGGGGCCTCCATGGACGCCG-----AGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s calJac3.chrY                     38057 23 +   2853901 GAGCAACTGGGCCTC------TGCAG-----AGA--
i calJac3.chrY                 I 734 C 0
s saiBol1.JH378345                134659 23 +    465904 GAGCAACTGGGCCTC------TGCAG-----AGA--
i saiBol1.JH378345             I 10 C 0
s otoGar3.GL873584                 98965 31 +  11138919 GACCCACC---CCCCCACACACACCATCCACAGA--
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=-4178.000000
s hg38.chrX_KI270880v1_alt         53706 12 +    284869 CGTCGGCTGGG-------------------------------------------------------------------------G
s panTro5.chrX                    175155 12 + 155549662 CGTCGGCTGGG-------------------------------------------------------------------------G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92811 85 +    105888 CGTCGGCTGGGCCTGCAACCACACCTGCAGCCCAGGCACTGGCGCCTGCACCCACGGCTGCAGCGAGGTGTGAGTCTCCACAGAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121758 12 +    417917 CGTTGGCTGGG-------------------------------------------------------------------------G
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39072 12 + 141252148 CGTCGGCTGGG-------------------------------------------------------------------------C
i nomLeu3.chrX                 C 0 C 0
s macFas5.chr7                 171696345  8 - 171882078 ----CACTGGG-------------------------------------------------------------------------G
i macFas5.chr7                 C 0 I 4
s cerAty1.NW_012001098v1          117154  8 -   1025902 ----CACTGCG-------------------------------------------------------------------------G
i cerAty1.NW_012001098v1       C 0 I 37
s calJac3.chrY                     38080 12 +   2853901 CGTCCACTGGG-------------------------------------------------------------------------C
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134682 12 +    465904 CGTCCACTGGG-------------------------------------------------------------------------C
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 98996 12 +  11138919 CTCCTGCTTCT-------------------------------------------------------------------------A
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e colAng1.NW_012115411v1          183771 466 +   1230721 M
e rheMac8.chrX                    109880 78 + 149150640 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=20405.000000
s hg38.chrX_KI270880v1_alt         53718  4 +    284869 ------------CCTG
s panTro5.chrX                    175167  4 + 155549662 ------------CCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92896  4 +    105888 ------------CTTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121770  4 +    417917 ------------CCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39084  4 + 141252148 ------------CCTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109958  4 + 149150640 ------------cctg
i rheMac8.chrX                 I 78 C 0
s macFas5.chr7                 171696357  4 - 171882078 ------------CCTG
i macFas5.chr7                 I 4 C 0
s cerAty1.NW_012001098v1          117199  4 -   1025902 ------------CCTG
i cerAty1.NW_012001098v1       I 37 C 0
s colAng1.NW_012115411v1          184239  4 +   1230721 ------------cctg
i colAng1.NW_012115411v1       M 466 C 0
s calJac3.chrY                     38092  4 +   2853901 ------------CCTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134694  4 +    465904 ------------CCTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99008 16 +  11138919 CCCCATAGACCCCCTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           15563 6708 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=46285.000000
s hg38.chrX_KI270880v1_alt         53722  40 +    284869 CACCCACA------------------------------------------------------------------C------------------------------------CTGCAGCCCAGGCACTGGCGCCTGCAGCCAC
s panTro5.chrX                    175171  40 + 155549662 CACCCACA------------------------------------------------------------------C------------------------------------CTGCAGCCCAGGCACTGGCGCCTGCACCCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92900  40 +    105888 CACCCACA------------------------------------------------------------------C------------------------------------CTGCAGCCCAGGCACTGGCGCCTGCAGCCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121774  40 +    417917 CACCCACA------------------------------------------------------------------C------------------------------------CTGCAGCCCAGGCACTGGCGTCTGCACCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39088  26 + 141252148 GACCCACG--------------------------------------------------------------------------------------------------------------------GCTGGTGCCTGCACCCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    109962  40 + 149150640 cacccacc------------------------------------------------------------------c------------------------------------ctgcggcccaggcgccggcacctgcacGCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696361 106 - 171882078 CACCCACCCCTGCAGCCCAggcgccggcacctgcacccacccctgcggcccaggcgccggcacctgcacccgccc------------------------------------ctgcggcccaggcgccggcacctgcACGCAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117203 107 -   1025902 CACCCACCCCTGCGGCCCAGGCGCTGGCACCTGCACCCA-----------------------------------CCCCTGCGGCGCCAGGCGCTGGCACCTGCACCCACCCCTGCGGCCCAGGCGCTGGCACCTGTACCCAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           22271  40 -    350446 CACCCACC------------------------------------------------------------------C------------------------------------CTGCGGCCCAGGCGCTGGCACCTGCACCCAC
i manLeu1.NW_012108508v1       I 6708 I 2
s colAng1.NW_012115411v1          184243  40 +   1230721 cacccaca------------------------------------------------------------------c------------------------------------ctgcagcccgggcgctggcacctgcacccac
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38096   7 +   2853901 CACCCGC---------------------------------------------------------------------------------------------------------------------------------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134698   7 +    465904 CACCCAC---------------------------------------------------------------------------------------------------------------------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99024  39 +  11138919 CTCCCATA------------------------------------------------------------------C------------------------------------CCGCAGACCA-GCACCCATACCCACACCCAA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892  14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=65256.000000
s hg38.chrX_KI270880v1_alt         53762 18 +    284869 GGCTGCAGCGAGGCGTGA
s panTro5.chrX                    175211 18 + 155549662 GGCTGCAGCGAGGTGTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92940 18 +    105888 GGCGGCAGCGAGGCGTGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121814 18 +    417917 GGCTGCAGCGAGGCGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39114 18 + 141252148 GACTGCAGCGAGGTGTGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrX                    110002 18 + 149150640 GGCTGCAGTGAGGTGTGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696467 18 - 171882078 GGCTGCAGTGAGGTGTGA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117310 18 -   1025902 GGCTGCAGTGAGGTGTGA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184283 17 +   1230721 -gctgcaGCGCGGTCTGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38103 18 +   2853901 AGTTCTGGTGAGCTGCGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134705 18 +    465904 GGCTCCGGGGAGCTGCGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99063 18 +  11138919 AGCTGGAGCAAGGCCTGG
i otoGar3.GL873584             C 0 I 10
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e cebCap1.NW_016107987v1          205770 775 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=107588.000000
s hg38.chrX_KI270880v1_alt         53780 19 +    284869 GTCTCCACAGAGCTCGGAA
s panTro5.chrX                    175229 19 + 155549662 GTCTCCACAGAGCTTGGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92958 19 +    105888 GTCTCCACAGAGCTCAGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121832 19 +    417917 GTCTCCACAGAGCTCGGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     39132 19 + 141252148 GTCTCCACAAAGCTCGGAA
i nomLeu3.chrX                 C 0 N 0
s rheMac8.chrX                    110020 19 + 149150640 GTCTCCACAGAGCTCGGAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696485 19 - 171882078 GTCTCCACAGAGCTCGGAA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117328 19 -   1025902 GTCTCCACAGAGCTCGGAA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184300 19 +   1230721 GTCTCCACGGAGCTCGGAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38121 19 +   2853901 GTCTCCACTGAGCTCAGAA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134723 19 +    465904 GTCTCCACCGAGCTTGGAA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206545 19 -    735872 GTCTCCACTGAGCTCAGAA
i cebCap1.NW_016107987v1       I 775 C 0
s otoGar3.GL873584                 99091 17 +  11138919 TTCTGCACACAGCACAG--
i otoGar3.GL873584             I 10 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=241097.000000
s hg38.chrX_KI270880v1_alt         53799 61 +    284869 GGCTGGGCTGGGGGACGTGGGGATCATTCTGT--CCACCAGCCAAGGGGTGACGGTGGATGCC
s panTro5.chrX                    175248 61 + 155549662 GGCTGGGCTGGGGAACGTGGGGATCATTCTGT--CCACCAGCCAACGGGTGACGGTGGATGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     92977 61 +    105888 GGCTGGGCTGGGGAACGTGGGGATCATTCTGT--CCACCAGCCAAGGGGTGACGGTGGATGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121851 61 +    417917 GGCTGGACTGGGGGACGTGGGGATCATTCTGT--CCACCAGCCAACGGGTGACGGTGGATGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110039 60 + 149150640 GGCTGGGCTGGGGGACGTGGGGGTCATTCTGT--CCACCAGCCGGGG-GGGACAGTGGATGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696504 60 - 171882078 GGCTGGGCTGGGGGACGTGGGGGTCATTCTGT--CCACCAGCCGGGG-GGGACGGTGGATGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117347 60 -   1025902 GGCTGGGCTGGGGGATGTGGGGGTCATTGTGT--CCACCAGCCGGGG-GGAACGGTGGATGCC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184319 61 +   1230721 GGCTGGGCTGGGCGACGTGGGGGTCGTTCTGT--CCGCCAGCCAAGGCGTGACGGTGGACGCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38140 61 +   2853901 GGCAGGGCTGGGGGACGTGGGGATCAAGGCGT--CCACCAGCCAAGGGGTGATGGGGGATGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134742 61 +    465904 GGCAGGGCTGGGGGACGTGGGGATCATGGCAC--CCACCAGCCGAGGGCTGACGGGGGATGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206564 61 -    735872 GGCAGGGATGGGGGACGTGGGGATCACGACGT--CCACCAGCCAAGGGGTGACGGGGGATGCC
i cebCap1.NW_016107987v1       C 0 I 33
s otoGar3.GL873584                 99108 43 +  11138919 -----GGCTGGAGGATATGGAAAAGGTTGTGTAGCCACCA-CAGAGGGG--------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=128030.000000
s hg38.chrX_KI270880v1_alt         53860 61 +    284869 GCGCAACACAGCGAGGGGAGGATCCGGCACCCTCCCTGCGTCCACAAG-CCCCTGGCGGATG
s panTro5.chrX                    175309 61 + 155549662 GCGCAACACAGCGAGGGGAGGATCCGGCACCCTCCCTGCGTCCGCAAG-CCCCTGGCGGATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93038 61 +    105888 GCGCAACACAGCGAGGGGAGGATCTGGCACCCTCCCTGCGTCCGCAAG-CCCCTGGCGGATG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121912 61 +    417917 GCGCAACACAGCGAGGGGAGGATCCGGCACCCTCCCTGCGTCCGCAAG-CCCCTGGCGGATG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110099 60 + 149150640 GGGCACCACAGCGAGGGGAGGATCTGGC-CCCTCCCTGCGTCCACAAG-CCCCTGGCGGATA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696564 60 - 171882078 GGGCACCACAGCGAGGGGAGGATCTGGC-CCCTCCCTGCATCCACAAG-CCCCTGGCGGATA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117407 60 -   1025902 GGGCACCACAGCGAGGGGAGGATCTGGC-CCCTCCCTGCGTCCACAAG-CCCCTGGCGGATA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184380 62 +   1230721 GGGCACCACAGCGAGGGGAGGATCGGGCGCCCTCCCTGCGTCCACGAGCCCCCTGGTGGATC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38201 58 +   2853901 AGGGTGCACGGTGA-GGGAGGATC-GCCACCCTCCCCGAGTGCAGCAG-TCCC-GGCAGCTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134803 33 +    465904 GGGGTGCACGGTGA-AGGAGGATC-GGCACCCTCC---------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99151 16 +  11138919 -------ACAGGAAAAGGAGGGT---------------------------------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e cebCap1.NW_016107987v1          206625 33 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=383471.000000
s hg38.chrX_KI270880v1_alt         53921 93 +    284869 CTCCTGAGCTTGGTCTTCTGTGTGGACGTTCCCACCCGGGCTTCTGTTTCCCGTTAACCCCCCT-----TGCTGCAGCTCCCTGCCAGGTGGGGAA--CC
s panTro5.chrX                    175370 93 + 155549662 CTCCTGAGCTTGGTCTTCTGTGTGGACGTTCCCACCCGGGCTTCTGTTTCCCGTTAACCCCTCT-----TGCTGCAGGTCCCTGCCAGGTGGGGAA--CC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93099 93 +    105888 CTCCTGAGCTTGGTCTTCTGTGTGGACGTTCCCACCCGGGCTTCTGTTTCCCCTTAACCCCCCT-----TGCTGCAGCTCCCTGCCAGGTGGGGAA--CC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          121973 93 +    417917 CTCCTGAGCTTGGTCTTCTGTGTGGACGTTCCCACCCGGGCTTCTGTTTCCCGTTAACCCCCTT-----TGCTGCAGCTCCCTGCCAGGTGGGGAA--CC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110159 98 + 149150640 CTCCTGAGCCTGGTCTTGTGTGTGGGTATTCCCGCCCGGGCTTCTGTTTCCTGTTAACCCCCCTCGCTGCGCTGCGGCTCCCTGCCAGGTGGGGAA--CC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696624 98 - 171882078 CTCCTGAGCCTGGTCTTGTGTGTGGGTATTCCCGCCCGGGCTTCTGTTTCCTGTTAACCCCCCTCGCTGCGCTGCGGCTCCCTGCCAGGTGGGGAA--CC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117467 98 -   1025902 CTCCTGAGCCTGGTCTTGTGTGTGGGTATTCCCACCTGGGCTTCTGTTTCCTGTGAACCCCCCTCGCTGCGCTGCGGCTCCCTGCCAGGTGGGGAA--CC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184442 93 +   1230721 CTCCTGAGCTTGGTCTTCTGTGTGGACGTTCCCACCCCGGCTTCTGTTTCCTGTGAACCCCCCT-----CGCTGCGGCTCCCTGCCAGGTGGGGAA--CC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38259 95 +   2853901 CTCCTGAGCCTGGTCTTCTGTGTGGGCGTCCCCACCTGGGCTTCTGTTTCCTGAGAACCCCCCT-----TGCTGCTGCTCCCCACCAGGTGGGGAACCCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                134836 93 +    465904 CTCCTGAGGCTGGTCTTCTGTGTGGGTGTCCCCACCCGGGCTTCTGTTTCCTGTGAACCCCCCT-----GGCTGCTGCTCCCCACCAGGTGGGGAA--CC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206658 90 -    735872 CTCCTGAGCCTGGTCTTCTGTGTGGGTGTCCCCACCCGGGCTTCTGTTTCCCGTGAACCCCCCT--------TGCTGCTCCCCGCCAGGTGGGGAA--CC
i cebCap1.NW_016107987v1       I 33 I 42
s otoGar3.GL873584                 99167 34 +  11138919 --------------------TAAGGGCAT------------------------------------------CTGCATCTACCAGCTCAGGGGTGAA----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=76777.000000
s hg38.chrX_KI270880v1_alt         54014 40 +    284869 CAAGCCCTGCCTTCTCCCTGCCACTGCCCAGGGAGTGGCA
s panTro5.chrX                    175463 40 + 155549662 CAAGCCCTGCCTTCTCCCTGCCACTGCCCAGGGAGTGGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93192 40 +    105888 CAAGCCCTGCCTTGTCCGTGCCACTGCCCAGGGACTGGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122066 40 +    417917 CAAGCCCTGCCTTCTCCCTGCCACTGCCCAGGGAGTGGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110257 38 + 149150640 C--GCTCTACCTTCTCCCTGCCACTGCCCAGGGAGCGGCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696722 38 - 171882078 C--GCTCTACCTTCTCCTTGCCACTGCCCAGGGAGCGGCA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117565 38 -   1025902 C--GCTCTACCTTCTCCGTGCCACTGCCCAGGGAGCGGCA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184535 32 +   1230721 CAAGCTCTACCTTCTCCCTGCCACTGCCCAGG--------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38354 23 +   2853901 CCAGCTCTACCTTCTCCCTCA-----------------CA
i calJac3.chrY                 C 0 I 3
s saiBol1.JH378345                134929 40 +    465904 CCAGCTCTGCGTCCTCCGTCACCCAGTCCTGGCAGGGGCA
i saiBol1.JH378345             C 0 I 3
s otoGar3.GL873584                 99201  9 +  11138919 ------------------------------GGGGGTGAC-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e cebCap1.NW_016107987v1          206748 42 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=110008.000000
s hg38.chrX_KI270880v1_alt         54054 28 +    284869 TCCTGGGCAGCGTCCTGGC-CAAACCAAA
s panTro5.chrX                    175503 28 + 155549662 TCCTGGGCAGCGTCCTGGC-CAAACCAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93232 28 +    105888 TCCTGGGCAGCGTCCTGGC-CAAACCGAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122106 28 +    417917 TCCTGGGCAGCATCCTGGC-CAAACCAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110295 28 + 149150640 TCCTGGGCGGCATCCCGGC-CAGACCAAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696760 28 - 171882078 TCCTGGGCGGCATCCCGGC-CAGACCAAA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117603 28 -   1025902 TCCTGGGCGGTGTCCTGGA-CAAACCAAA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184567 24 +   1230721 ----GGGTGGCATCCCGGC-CAAACCAAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38380 27 +   2853901 TCCTGGGCAGGGT-CTGGG-CAAACCAAA
i calJac3.chrY                 I 3 C 0
s saiBol1.JH378345                134972 28 +    465904 GCCTGGGCAGCGTCCTGGG-CAAACCGAA
i saiBol1.JH378345             I 3 C 0
s cebCap1.NW_016107987v1          206790 28 -    735872 TCCTGGGCAGCGTCCTGGG-CAAACCAAA
i cebCap1.NW_016107987v1       I 42 I 74
s otoGar3.GL873584                 99210 26 +  11138919 ---TGTGGAGCATAGTAACACAGAGCAAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=197395.000000
s hg38.chrX_KI270880v1_alt         54082 87 +    284869 GGCTGCAAGGGTTTTGGTGACCACTGGCCTTGGGAGGGGAACGGCAC--GTGCCCTGGCGGTGAGAGCAGGAGGTG----------------CGTCAGGGAC--GCC
s panTro5.chrX                    175531 87 + 155549662 GGCTGCAAGGGTTTTGGTGACCACTGGCCTTGGGAGGGGAACGGCAC--GTGCCCTGGCAGTGAGAGCAGGAGGTG----------------CGTCAGGGAC--GCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93260 87 +    105888 GGCTGCAAGGGTTTTGGTGAGCACTGGCCGTGGGAGGGGAACGGCAC--GTGCCCTGGCGGTGAGAGCAGGAGGTG----------------CGTCAGGGAC--GCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122134 87 +    417917 GGCTGCAAGGGTTTTGGTGACCACTGGCCTTGGGAGGGGAACGGCAC--GTGCCCTGGCGGTGAGAGCAGGAGGTG----------------CGTCAGGGAC--GCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110323 84 + 149150640 GGCTGCAAGGGTTCTAGCGACCATGGGCCCTGGGAGGGGAACGGCAC--GTGCTCTGGCGGTGAG---AGCGGGTG----------------CGTCGGGGAT--GCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696788 84 - 171882078 GGCTGCAAGGGTTCTAGCGACCACGGGCCCTGGGAGGGGAACAGCAC--GTGCTCTGGCGGTGAG---AGCGGGTG----------------CGTCGGGGAT--GCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117631 84 -   1025902 GGCTGCAAGGGTTCTGGTGACCACAGGCCCTGGGAGGGGAACGGCAC--GTGCTCTGGCGGTGAG---AGCAGGTG----------------CGTCGGGGAT--GCC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184591 87 +   1230721 GGCTGCCAGGGTTCTGGCGACCACGGGCCCCCGGAGGCGAACGGCAC--GTGCTCTGGCGGTGAGAGCAGCAGGTG----------------CGTCAGGGAT--GCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38407 76 +   2853901 ------------------GGCCAC---------AAGGGGAACGGCAC--GTGCTCTCGCCATAGACCGGGGAGGTGGGGTGACCGTGCACGCCGTCAGGGAT--GTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135000 76 +    465904 ------------------GGCCAC---------GAGGGGAATGGCAC--GTGCTCTCGCCGCAGACCGGAGAGGTGCCGTGAACGTGCACGCCATCAGGGAT--GTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99236 58 +  11138919 --------GGGCACTGGGTACCTC---CCCT-------GCACAGCACTGGGACCCT---------------ACGTG----------------CATCTGGGGTCAGCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e cebCap1.NW_016107987v1          206818 74 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=188070.000000
s hg38.chrX_KI270880v1_alt         54169 52 +    284869 CAGAGCCC--AGGCT--GTCACCACGCTGAAGTCAGTTCCAAGTACAGCGGGGCTG-
s panTro5.chrX                    175618 52 + 155549662 CAGAGCCC--AGGCT--GTCACCACACTGAAGTCAGTTCCAAGTACAGTGGGGCTG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93347 56 +    105888 CAGAGCCCCAGGGCCTGGTCACCACGCTGAAGTCAGTTCCAAGTACAGTGGGGCTG-
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122221 45 +    417917 C---------AGGCT--GTCACCACGCTGAAGTCAGTTCCAAGTACAGCGGGGCTG-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110407 52 + 149150640 CAGAGCCC--AGGCT--GCCACCCCGCCGAAGTCGGCTCCAACCACAGCGGGGCTG-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696872 52 - 171882078 CAGAGCCC--AGGCT--GCCACCACGCCGAAGTCGGCTCCAACCACAGCGGGGCTG-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117715 52 -   1025902 CAGAGCTC--AGGCT--GCCACCACGCCGAGGTCGGCTCCAACCACAGCGGGGCTG-
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184678 52 +   1230721 CAGAGCCC--AGGCT--GGCACCACGCCGAGGTCGGCTCCAACCACCGCGGGGCTG-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38483 51 +   2853901 CAGAGCCC--AGGCT--GTCAACA-GCCGCCGTCAGCTCCGAGGATGGGGGGGCTG-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135076 51 +    465904 CAGAGCCC--AGGCT--GTCACCAGGCCGCCATCAGCTCCGAGTAC-GGGCGGCTG-
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206892 52 -    735872 CAGAGCCC--AGGCT--GTCACCACGCCGCCGTCAGCTCCGAGTACGGGGGGGCTG-
i cebCap1.NW_016107987v1       I 74 I 17
s otoGar3.GL873584                 99294 49 +  11138919 CAGAGCCT--AGGCT--GCC--CACCCAGAGGACAGCTCCATGTACA--GGAGATGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=62481.000000
s hg38.chrX_KI270880v1_alt         54221 31 +    284869 CCGCGTA-------------------------GGGGACGGCGCTTTCAG-----CCATGCG
s panTro5.chrX                    175670 31 + 155549662 CCGCGTA-------------------------GGGGATGGTGCTTTCAG-----CCGTGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93403 31 +    105888 CCGCGTA-------------------------GGGGACGGCGCTTTCAG-----CCGTGCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122266 30 +    417917 CCGCGTA--------------------------GGGACAGCGCTTTCAG-----CCATGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110459 31 + 149150640 CCGCGTC-------------------------GGGCACGGCGCTTTCAG-----CCGTGGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696924 31 - 171882078 CCGCGTC-------------------------GGGCACAGCGCTTTCAG-----CCGTGGA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117767 31 -   1025902 CCGCGTT-------------------------AGGGACGGCGCTTTCAG-----CGGTGGA
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184730 31 +   1230721 CCGCGTT-------------------------GGCGACGGCGCTTTCGG-----CCGTGGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38534 31 +   2853901 CCGTGTG-------------------------GGGGGGGGTGCTCTCAG-----CCGTGGA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135127 18 +    465904 CCGCCTT-------------------------GGGGG------------------CATGGA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99343 61 +  11138919 CCACATCAGGGACCCAGGGGATGGTCACCTCAGGGGATGGCCACCTCAGAGGACCCAAGCG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e cebCap1.NW_016107987v1          206944 17 -    735872 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=73092.000000
s hg38.chrX_KI270880v1_alt         54252 17 +    284869 TGGTGCCGTGTAGGGTC
s panTro5.chrX                    175701 17 + 155549662 TGGTGCTGTGCAGGGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93434 17 +    105888 TGGTGCTGTGCAGGGTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122296 17 +    417917 TGGTGCTGTGCAGGGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110490 17 + 149150640 CGGTGCTGTGCAGGGTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696955 17 - 171882078 CGGTGCTGTGCAGGGTC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117798 17 -   1025902 CGGTGCTGTGCAGGGTG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          184761 17 +   1230721 TGGTGCTGTGCAGGGTC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38565 16 +   2853901 CGGTGCTGCGT-GGGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135145 16 +    465904 TGGTGCTGTGT-GGGTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206961 17 -    735872 TGGTGCTGCGTGGGGTC
i cebCap1.NW_016107987v1       I 17 C 0
s otoGar3.GL873584                 99404 14 +  11138919 ---TGCAATGTTGGGTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22311  2 -    350446 I
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=50258.000000
s hg38.chrX_KI270880v1_alt         54269 10 +    284869 TGTGCGTCCA
s panTro5.chrX                    175718 10 + 155549662 TGTGCGTCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93451 10 +    105888 TGTGCGTCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122313 10 +    417917 TGTGCGTCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110507 10 + 149150640 TGTGCGTCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696972 10 - 171882078 TGTGCGTCCG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117815 10 -   1025902 TGTGCGTCCG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           22313 10 -    350446 TGTGCGTCCG
i manLeu1.NW_012108508v1       I 2 C 0
s colAng1.NW_012115411v1          184778 10 +   1230721 TGTGCGTCCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38581 10 +   2853901 TGTGCATCCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135161 10 +    465904 TGCGCATCCG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206978 10 -    735872 TGTGCATCCG
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 99418  7 +  11138919 TGGGTGA---
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        102892 14 -    811265 I
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=1045359.000000
s hg38.chrX_KI270880v1_alt         54279 177 +    284869 CCCGAAGGA-CCCCGTGGGGACGCCGGACAGTGTCTGTGTGACCAGGACAGGTGAAGAGGGGCGTCTGTGTGCTGAGTCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCGGGGAGGGCCAGGCTA-----------------GGCAGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
s panTro5.chrX                    175728 177 + 155549662 CCCGAAGGA-CCCCGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACAGGTGAAGAGGGGTGTCTGTGTGCTGAGTCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCGGGGAGGGCCAGGCTA-----------------GGCAGCACGGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93461 177 +    105888 CCCGAAGGA-CCCCGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACAGGTGAAGAGGGGTGTCTGTGTGCTGAGTCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCGGGGAGGGCCAGGCTA-----------------GGCAGCACGGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122323 178 +    417917 CCGGAAGGACCCCCGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACAGGTGAAGAGGGGCGTCTGTGTGCTGAGTCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCGGGGAGGGCCAGGCTA-----------------GGCATCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110517 177 + 149150640 CCCGAAGGA-CCCCGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACCGGTGAAGAGGAGCATCTGTGTG-TGAACCAGTGTGTGGGGA-GCGGGAGGGTCACTCCCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCGGTCCTGCTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171696982 177 - 171882078 CCCGAAGGA-CCCCGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACCGGTGAAGAGGAGCATCTGTGTG-TGAACCAGTGTGTGGGGA-GCGGGAGGGTCACTCCCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCGGTCCTGCTG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          117825 178 -   1025902 CCCGAAGGA-CCCCGTGGGGATGCTGGACAGTGTCTGTGTGACCAGGACAGGTGACGAGGAGCATCTGCGTGCTGAACCAGTGTGTGGGGA-GCGCGAGAGTCAGTCCCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCTGGGCT-------------GGCAACAAGGTCTGAGCTGTCCTGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        102906 178 -    811265 CCCGAAGGA-CCCCGTGGGGATGCTGGACAGTGTCTGTGTGACCAGGACAGGTGACGAGGAGCATCTGCGTGCTGAACCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCAGGGAGGGCCCGGCTG----------------CGGCAGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i chlSab2.chrUn_KE147541v1     I 14 C 0
s manLeu1.NW_012108508v1           22323 178 -    350446 CCCGAAGGA-CCCTGTGGGGACGCTGGACAGTGTCTGTGTGACCAGGACAGGTGACGAGGAGCATCTGCGTGCTGAACCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          184788 176 +   1230721 CCCGAAGGA-CCCGGTGGGGACGCCGGACAGGGTCTGTGTCACCAGGACAGGTAAAGAGGAGCATCTGTGC--TGAACCAGTGTGTGGGGA-GCGGGAGAGTCACTCCCCAGGCCGGGAGGGCCAGGCTG----------------GGGCGGCACAGCTGTCCTGGGCT-------------GGGAACAAGGTCTGAGCTGTCCTGCTG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38591 171 +   2853901 CCCGAAGGA-CCCTGCGGGGACGCTGGATGGTGTCTGTGAG-------CAGGTCAGCAGGGCTGTCTGTGCGCTGAGCCGCTGTGTGGGGG-GTGGGACAGTCACTCTCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCCGCGCA-------------GGGAGCATGGTCTGAGCTGTCCTGGAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135171 147 +    465904 CCTGAAGGA-CCCTGTGGGGACGCTGGATGG-------------------------------TGTCTGTGTGCTGAGCCGGTGGGTGTGGG-GTGGGACAGTCACTCTCCAGGCAGGGAGGGCCAGGCTG----------------GGGCAGCACAGCTGTCCCGCGCA-------------GGGAGCAAGGTCTGAGCTGCCCCGGAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          206988 178 -    735872 ACCGAAGGA-CCCTGTGAGGACGCTGGATGGTGTCTTTGTGACCAGGACAGGTGAACAGGGCTGTCTGCGTGCTGAGCCGGCGTGTGCGGG-GTGGGACAGTCACTCTCCAGGCAGGGAAGGTCAGGCTC----------------GGGCAGCACAGCTGTCCCGCGCA-------------GGGAGCAAGGTCTGAGCTGCCCCGGAG
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                 99425 186 +  11138919 -----------CCCAAAGGGATGCTGGACAGTGTCCACACACCCAGAGAGAGAGAC------------TGCACTAAGCCAGACCATGGGGGTGGGAAAAATTCATCCTCCAGGGGGAAAAGGGCGGGACCCAGTGTGGCCACAGTTGGGCAGGATGGCTGTTCTGGGCTACCCTCAGGGCCAGGAGACAAGTTTAGAGTAATCTTGATG
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          164255 1035 +  25972781 I

a score=275821.000000
s hg38.chrX_KI270880v1_alt         54456 41 +    284869 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCAGGAGG
s panTro5.chrX                    175905 41 + 155549662 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCAGGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93638 41 +    105888 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCAGGAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122501 41 +    417917 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCAGGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110694 40 + 149150640 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCA-CAGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697159 40 - 171882078 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCA-CAGG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165290 40 +  25972781 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCA-CAGG
i macNem1.NW_012017243v1       I 1035 C 0
s cerAty1.NW_012001098v1          118003 40 -   1025902 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCA-CAGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103084 40 -    811265 TTGCCCGG-GGACTGAAGGCCCGAGAATCCCTGGGCA-CAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22501 39 -    350446 TTGCCCAG-GGACAGAAGGCCCAAGAATCCCTGGGCA-CAG-
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          184964 40 +   1230721 TTGCCCGG-GGACAGAAGGCCCGAGAATCCCTGGGCA-CAGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38762 40 +   2853901 CTGCCCAG-AAACA-AAGGGCTGAGAACCCCTGGGCAGGACG
i calJac3.chrY                 C 0 I 1
s saiBol1.JH378345                135318 40 +    465904 TTGCCCAG-AGACA-AAGGCCTGAGGACTCTTGGGCAGGAGG
i saiBol1.JH378345             C 0 I 1
s cebCap1.NW_016107987v1          207166 40 -    735872 CTGCCCGG-AGACA-AAGGCCTGAGAACCTTTGGGCAGGAGG
i cebCap1.NW_016107987v1       C 0 I 131
s otoGar3.GL873584                 99611 42 +  11138919 CTGTTCAGTGGACAGAAGGCCCAGGGATCCACGGACAGGTGA
i otoGar3.GL873584             C 0 C 0

a score=354081.000000
s hg38.chrX_KI270880v1_alt         54497 66 +    284869 ----CGCAGGC--AGTGGCTCCGGCAAGAAGAGCTCAGC-CAAGCAGCTGCACGGCCCCACTCCAGGTACATG
s panTro5.chrX                    175946 66 + 155549662 ----CGCAGGC--AGTGGCTCCAGCAAGAAGAGCTCAGC-CAAGCAGCTGCACGGCCCCACTCCAGGTACATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93679 66 +    105888 ----CGCAGGC--AGTGGCTCCAGCAAGAAGAGCTCAGC-CAAGCAGCTGCACGGCCCCACTCCAGGTACATG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122542 66 +    417917 ----CGCAGGC--AGTGGCTCCAGCAAGAAGAGCTCAGC-CAAGCAGCTGCACGGCCCCACTCCAGGTACATG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    110734 68 + 149150640 ----CGCAGGCAGAGTGGCTCCAGCAAGAGGAGCTTGGC-CAGGCAGCTGCATGGCCACGCTCCAGGTACACG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697199 68 - 171882078 ----CGCAGGCAGAGTGGCTCCAGCAAGAAGAGCTTGGC-CAGGCAGCTGCATGGCCACGCTCCAGGTACACG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165330 68 +  25972781 ----CGCAGGCAGAGTGGCTCCAGCAAGAAGAGCTTGGC-CAAGCAGCTGCATGGCCACGCTCCAGGTACACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118043 68 -   1025902 ----CGCAGGCAGAGTGGCTCCAGCAAGAAGAGCTCGGC-CAGGCAGCTGCACGGCCATGCTCCAGGTACACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103124 68 -    811265 ----CGCAGGCAGAGTAGCTCCAGCAAGAAGAGCTCGGC-CAGGCAGCTGCACGGCCACGCTCCAGGTACACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22540 55 -    350446 -----------------GCTCCAGCAAGAAGAGCTCGGC-CAGGCAGCTGCACGGCCACGCTCCAGGTACACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185004 68 +   1230721 ----TGCAGGCAGAGAGGCTCCAGCAAGAAGAGCTCGGC-CCGGCAGCTGCACGGCCACGCTCCAGATACACG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     38803 52 +   2853901 ----TGCGGGCAGAGCAGCTCCAGCAAGAAGGGCTC-----------------GGCCACGCTCCAGTGGCACA
i calJac3.chrY                 I 1 I 1385
s saiBol1.JH378345                135359 68 +    465904 ----TGCGGGCACGGCAGCTCCAGCAAGAAGGCCTCGGC-TAGGCAGCTGCATGGCCACGCTCCAGTGGCCTG
i saiBol1.JH378345             I 1 I 283
s otoGar3.GL873584                 99653 70 +  11138919 TAAGTGGACCCAGAATGGCTGTCGCAAAA---GCTCAGTGGAGGGCCCTGCTGGGGCATACTCCAGACGCGAG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207206 131 -    735872 I

a score=127001.000000
s hg38.chrX_KI270880v1_alt         54563 21 +    284869 CTGGGTCCTACAGTGAGAGCA
s panTro5.chrX                    176012 21 + 155549662 CTGGGTCCTACAGTGAGAGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93745 21 +    105888 CTGGGTCCTACAGTGAGAGCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122608 21 +    417917 CTGGGACCCACGGTGAGAGTA
i gorGor5.CYUI01015925v1       C 0 I 212
s rheMac8.chrX                    110802 21 + 149150640 CTGGGTCCTACAGTGAGAGCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697267 21 - 171882078 CTGGGTCCTACAGTGAGAGCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165398 21 +  25972781 CTGGGTCCTACAGTGAGAGCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118111 21 -   1025902 CTGGGTCCTACAGTGAGAGCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103192 21 -    811265 CTGGGTCCTACAGTGAGAGCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22595 21 -    350446 CTGGGTCCTACAGTGAAAGCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185072 21 +   1230721 CTGGGTTCTACAGTGAGAGCA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40240 21 +   2853901 CTGGGACCCACGGTGTGACCA
i calJac3.chrY                 I 1385 C 0
s saiBol1.JH378345                135710 21 +    465904 CTGGGACCCACGGCGAGAGCA
i saiBol1.JH378345             I 283 C 0
s otoGar3.GL873584                 99723 19 +  11138919 -TGCATCCT-TTGTAAGAGAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207206 131 -    735872 I

a score=19128.000000
s hg38.chrX_KI270880v1_alt         54584 5 +    284869 TGAGC
s panTro5.chrX                    176033 5 + 155549662 TGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93766 5 +    105888 TGAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s rheMac8.chrX                    110823 4 + 149150640 TGTG-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697288 5 - 171882078 TGTGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165419 5 +  25972781 TGTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118132 5 -   1025902 TGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103213 5 -    811265 TGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22616 5 -    350446 TGTGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185093 5 +   1230721 TGTAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40261 5 +   2853901 CGTGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135731 5 +    465904 CGTGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99742 5 +  11138919 TGTGT
i otoGar3.GL873584             C 0 I 19
e cebCap1.NW_016107987v1          207206 131 -    735872 I
e gorGor5.CYUI01015925v1          122629 212 +    417917 I

a score=146064.000000
s hg38.chrX_KI270880v1_alt         54589 27 +    284869 CGTGTAACACGCCATCGTCACACGGGA--
s panTro5.chrX                    176038 27 + 155549662 CGTGTAACACGCCATCGTCACACGGGA--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93771 16 +    105888 CGTGTAACACGCCATC-------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122841 27 +    417917 CGTGTAACATGCCATCGTCACACGGGA--
i gorGor5.CYUI01015925v1       I 212 C 0
s rheMac8.chrX                    110827 27 + 149150640 CGTGTAACACGCGGTCGTCACACGGGG--
i rheMac8.chrX                 C 0 I 153
s macFas5.chr7                 171697293 27 - 171882078 CGTGTAACACGCGGTCGTCACACGGGG--
i macFas5.chr7                 C 0 I 102
s macNem1.NW_012017243v1          165424 27 +  25972781 CGTGTAACACGCGGTCGTCACACGGGG--
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118137 27 -   1025902 CGTGTAACACGCTGTCGTCACACGGGG--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103218 27 -    811265 CGTGTAACACGCTGTCGTCACACGGGG--
i chlSab2.chrUn_KE147541v1     C 0 I 153
s manLeu1.NW_012108508v1           22621 27 -    350446 CGTGTAACACGCGGTCGTCACACGGGG--
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185098 26 +   1230721 CGTGTAACACGCTATGGTCACACGGG---
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40266 27 +   2853901 CGTGTAACACGCTATCATCACACAGGG--
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135736 27 +    465904 CGTGTAACACGCTGTCATCACACAGGG--
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99766 24 +  11138919 CATGTGTCACG-----ACCAAACAAGGAG
i otoGar3.GL873584             I 19 C 0
e cebCap1.NW_016107987v1          207206 131 -    735872 I

a score=4200.000000
s hg38.chrX_KI270880v1_alt         54616 2 +    284869 GC
s panTro5.chrX                    176065 2 + 155549662 GC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          122868 2 +    417917 GC
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          185124 2 +   1230721 GC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40293 2 +   2853901 GC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135763 2 +    465904 GC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99790 2 +  11138919 GC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22648 0 -    350446 C
e cebCap1.NW_016107987v1          207206 131 -    735872 I
e chlSab2.chrUn_KE147541v1        103245 153 -    811265 I
e cerAty1.NW_012001098v1          118164 0 -   1025902 C
e rheMac8.chrX                    110854 153 + 149150640 I
e macNem1.NW_012017243v1          165451 0 +  25972781 C
e macFas5.chr7                 171697320 102 - 171882078 I
e panPan2.chrUn_NW_014024225v1     93787 0 +    105888 C

a score=200813.000000
s hg38.chrX_KI270880v1_alt         54618  51 +    284869 ------CTCCCCGGACCCACGGTGAGAGTACG-----TGTAAC----ACGCCATCGTCACACGGGA--------------------------------------------
s panTro5.chrX                    176067  51 + 155549662 ------CTCCCCAGACCCACGGTGAGAGTACG-----TGTAAC----ACACTATTGTCACACGGGA--------------------------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93787  11 +    105888 -------------------------------------------------------GTCACACGGGA--------------------------------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122870  51 +    417917 ------CTCCCCGGACCCACGGTGAGAGTATG-----TGTAAC----ACACCATCGTCACACGGGA--------------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111007  51 + 149150640 ------CTGCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCGGTCGTCACACGGGG--------------------------------------------
i rheMac8.chrX                 I 153 C 0
s macFas5.chr7                 171697422  51 - 171882078 ------CTGCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCGGTCGTCACACGGGG--------------------------------------------
i macFas5.chr7                 I 102 C 0
s macNem1.NW_012017243v1          165451  51 +  25972781 ------CTCCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCGGTCGTCACACGGGG--------------------------------------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118164  51 -   1025902 ------CTCCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCTGTCGTCACACGGGG--------------------------------------------
i cerAty1.NW_012001098v1       C 0 I 204
s chlSab2.chrUn_KE147541v1        103398  51 -    811265 ------CTCCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCTGTCGTCACACAGGC--------------------------------------------
i chlSab2.chrUn_KE147541v1     I 153 C 0
s manLeu1.NW_012108508v1           22648  51 -    350446 ------CTCCCCGGACCCACGGCGAGAGTACG-----TGTAAC----ACGCGGTCGTCACACGGGG--------------------------------------------
i manLeu1.NW_012108508v1       C 0 I 140
s colAng1.NW_012115411v1          185126  49 +   1230721 --------TCCCGGACCCACGGCGAGAGTACG-----TGTAGC----ACGCCATCGTCACACAGGT--------------------------------------------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40295  56 +   2853901 ------CTCCTGGGACCCACGGTGGGACCACGTGCCCTGTAAC----ACGCTATCATCACACAGGG--------------------------------------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135765  56 +    465904 ------CTCCTGGGACCCACGGCGAGAGCACGTGCCGTGTAAC----ACGCTGCCATCACACAGGG--------------------------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99792 105 +  11138919 CATGTGTGTGTCACAACTGAAGTGAGGACATA-----GGTGACTGCTAGGCCAGGGTCAGATGGACCAGGCATAAGGGCAGAGTTCAAAGGATGAGGTCAGAGGTGATGA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207206 131 -    735872 I

a score=2720.000000
s hg38.chrX_KI270880v1_alt         54669 2 +    284869 -GC
s panTro5.chrX                    176118 2 + 155549662 -GC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93798 2 +    105888 -GC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122921 2 +    417917 -GC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103449 2 -    811265 -GC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          185175 2 +   1230721 -GC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40351 2 +   2853901 -GC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135821 2 +    465904 -GC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99897 2 +  11138919 AG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           22699 140 -    350446 I
e cebCap1.NW_016107987v1          207206 131 -    735872 I
e cerAty1.NW_012001098v1          118215 204 -   1025902 I
e rheMac8.chrX                    111058 0 + 149150640 C
e macNem1.NW_012017243v1          165502 0 +  25972781 C
e macFas5.chr7                 171697473 0 - 171882078 C

a score=46703.000000
s hg38.chrX_KI270880v1_alt         54671 7 +    284869 CTCCCCG
s panTro5.chrX                    176120 7 + 155549662 CTCCCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93800 7 +    105888 CTCCCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122923 7 +    417917 CTCCCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111058 7 + 149150640 CTCCCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697473 7 - 171882078 CTCCCCG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165502 7 +  25972781 CTCCCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118419 7 -   1025902 CTCCCCG
i cerAty1.NW_012001098v1       I 204 C 0
s chlSab2.chrUn_KE147541v1        103451 7 -    811265 CTCCCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22839 7 -    350446 CTCCCCG
i manLeu1.NW_012108508v1       I 140 C 0
s colAng1.NW_012115411v1          185177 7 +   1230721 CTCCCGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40353 7 +   2853901 CTCCTGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135823 7 +    465904 CTCCTGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99899 7 +  11138919 CTTCTGG
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207206 131 -    735872 I

a score=277128.000000
s hg38.chrX_KI270880v1_alt         54678 39 +    284869 --GACCCACGGCGTGAACGCATGCTGTT----CCGTTCCCAAGGC---
s panTro5.chrX                    176127 39 + 155549662 --GACCCACGGCGTGAACGCATGCTGTT----CCGTTCCCAAGGC---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93807 39 +    105888 --GACCCACGGCGTGAACGCATGCTGTT----CCGTTCCCAAGGC---
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122930 39 +    417917 --GACCCACAGCGTGAACGCAGGCTGTT----CCGTTCCCAAGGC---
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111065 39 + 149150640 --GACCCACGGCGTGAACGCATGCTGTT----CCCCTCCCAAGGC---
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697480 39 - 171882078 --GACCCACGGCGTGAACGCATGCTGTT----CCCCTCCCAAGGC---
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165509 39 +  25972781 --GACCCACGGCGTGAACGCATGCTGTT----CCCCTCCCAAGGC---
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118426 39 -   1025902 --GACCCACGGCGGGAACGCATGCTGTT----CCCCTCCCAAGGC---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103458 39 -    811265 --AACCCATGGCGTGAATGCATGCTGTT----CCCCTCCCAAGGC---
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22846 39 -    350446 --GACCCACGGCGAGAATGCATGCTGTT----CCCCTCCCAAGGC---
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185184 39 +   1230721 --GACCCACGGCGTGAACGCATGCTGTT----CCCCTCCCAAGGT---
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40360 39 +   2853901 --GACCTACGGCGAGAACACGTGCTGTT----CCCAACCCGAGGC---
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135830 39 +    465904 --GACCCACGGCGAGAGCACGTGCTGTT----CCCATCCCAAGGC---
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          207337 39 -    735872 --GACCCACGGCGAGAACACATGCTGTT----CCCATCCCAAGGC---
i cebCap1.NW_016107987v1       I 131 I 58
s otoGar3.GL873584                 99906 47 +  11138919 GATACCTACA-TGCTGCCATATGCCATTACAGCATCTCACAGGGGACC
i otoGar3.GL873584             C 0 C 0

a score=45614.000000
s hg38.chrX_KI270880v1_alt         54717 20 +    284869 ---CGGCGGTCGCTGAA---CG-------CCCC
s panTro5.chrX                    176166 20 + 155549662 ---TGGCGGTCGCTGAA---CG-------CCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93846 20 +    105888 ---CGGCGGTCGCTGAA---CG-------CCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122969 20 +    417917 ---CGGCAGTCGCTGAA---CG-------CCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111104 20 + 149150640 ---CGGCGGTCGCTGAC---CC-------CCCC
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171697519 20 - 171882078 ---CGGCGGTCGCTGAC---CC-------CCCC
i macFas5.chr7                 C 0 I 3
s macNem1.NW_012017243v1          165548 20 +  25972781 ---CGGCGGTCGCTGAC---CC-------CCCC
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1          118465 20 -   1025902 ---CGGCGGTCGCTGAC---CG-------CCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103497 23 -    811265 ---CGGCGATCGCTGACCCGCC-------CCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           22885 20 -    350446 ---CGGCAGTCGCTGAC---CC-------CCCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185223 10 +   1230721 ---CGGCGGTCCC--------------------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40399 27 +   2853901 ---GGGAGGTCACTGAA---ACTGAACACCCCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135869 26 +    465904 ---GGGAGGACACTGAA---CCTGAACA-CCCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                 99953 14 +  11138919 CAAAGGCACAC-CTG------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207376 58 -    735872 I

a score=-4475.000000
s hg38.chrX_KI270880v1_alt         54737 6 +    284869 CACCCC--
s panTro5.chrX                    176186 6 + 155549662 CATCCC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93866 6 +    105888 CATCCC--
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122989 6 +    417917 CATCCC--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111125 4 + 149150640 --AACC--
i rheMac8.chrX                 I 1 C 0
s macNem1.NW_012017243v1          165569 4 +  25972781 --AACC--
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1          118485 2 -   1025902 ----CC--
i cerAty1.NW_012001098v1       C 0 I 4
s chlSab2.chrUn_KE147541v1        103520 5 -    811265 -CAACC--
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1           22905 5 -    350446 -CAACC--
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          185233 6 +   1230721 CCCCTC--
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40426 4 +   2853901 --CACC--
i calJac3.chrY                 C 0 I 3
s saiBol1.JH378345                135895 4 +    465904 --CACC--
i saiBol1.JH378345             C 0 I 3
s otoGar3.GL873584                 99967 6 +  11138919 --CACCAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207376 58 -    735872 I
e macFas5.chr7                 171697539 3 - 171882078 I

a score=125729.000000
s hg38.chrX_KI270880v1_alt         54743 26 +    284869 CCGAGTTTGGTTT----GTCAAGGATGCCG
s panTro5.chrX                    176192 26 + 155549662 CCGAGTTTGGTTT----GTCAAGGATGCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93872 26 +    105888 CCGAGTTTGGTTT----GTCAAGGATGCCG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          122995 26 +    417917 CCGAGTTTGGTTT----GTCAAGGATGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111129 24 + 149150640 --GGGTTTGGTTT----GGCAAGGATGCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697542 26 - 171882078 CCGGGTTTGGTTT----GGCAAGGATGCCG
i macFas5.chr7                 I 3 C 0
s macNem1.NW_012017243v1          165573 24 +  25972781 --GGGTTTGGTTT----GGCAAGGATGCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118491 26 -   1025902 CCCGGTTTGCTTT----GGCAAGGATGCCG
i cerAty1.NW_012001098v1       I 4 C 0
s chlSab2.chrUn_KE147541v1        103526 23 -    811265 ---GGTTTGGTTT----GGCAAGGATGCCG
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1           22911 23 -    350446 ---GGTTTGCTTT----GGCAAGGATGCCG
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          185239 25 +   1230721 -CCGGTTTGGTTT----GGCAAGGATGCCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     40433 25 +   2853901 CCGAGTTTGGTTT----GGCAAGGATGCT-
i calJac3.chrY                 I 3 C 0
s saiBol1.JH378345                135902 25 +    465904 CTG-GTTTGGTTT----GGCCAGGAGGCTG
i saiBol1.JH378345             I 3 I 7
s otoGar3.GL873584                 99973 23 +  11138919 --CCGTTTCCTTCCCAAGGCCAGAA-----
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207376 58 -    735872 I

a score=956874.000000
s hg38.chrX_KI270880v1_alt         54769 163 +    284869 GTGACAGGGA-----AGTGGGC---------AGTGGCAG---GGAGGAGGAGGAGCTT-GGGTTCACCATCGGGGCAGGCAGCACCCGCCAGGGGGTTAGT-GGG-AACAGAAGCCC--A-GGT-GGGACGTC--GCACAGTCAGAAGATCAAGCTCAGGAGCACCCGCCAGGGGCTCGTGGGTGCGGC
s panTro5.chrX                    176218 163 + 155549662 GTGACAGGGA-----AGTGGGC---------AGTGGCAG---GCAGGAGGAGGAGCTT-GGGTTCACCACCTGGGCAGGCAGCACCCGCCAGGAGGTTAGT-GGG-AACACAAGCCC--A-GGC-AGGATGTC--GCACAGTCAGAAGATCAAGCTCAGGAGCACCCACCAGGGGCTCGTGGGTGCGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     93898 167 +    105888 GTGACAGGGA-----AGTGGGC---------AGTGGCAG---GCAGGAGGAGGAGCTTGGGGTTCACCACCTGGGCAGGCAGCACCCGCCAGGAGGTTAGTGGGG-AACACAAGCCCCAG-GGC-AGGATGTC--GCACAGTCAGAAGATCAAGCTCAGGAGCACCCACCAGGGGCTCGTGGGTGCGGC
i panPan2.chrUn_NW_014024225v1 C 0 M 5319
s gorGor5.CYUI01015925v1          123021 163 +    417917 CTGACAGGGA-----AGTGGGC---------AGTGGCAG---GGAGGAGGAGGAGCTT-GGGTTCACCACCTGGGCAGGCAGCACCCGCCAGGGGGTTAGT-GGG-AACAGAAGCCC--A-GGC-GGGACGTC--GCACAGTCAGAAGATCAAGCTCAGGAGCACCCGCCAGGGGCTCGTGGGTGCGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111153 164 + 149150640 GTGACTGGGA-----AGTGGGC---------AGTGACCG---GGAGGAGGAGGAGCCG-GGGTTGACCAGCCGGGCAGGGAGCATCCGCCAGGGGGTTTGC-AGG-AACAGAAGCCC--A-GGC-GGGACGTCT-GCACATTCGGAAGAACAAGCTCAGGAGCACCCACCGGAGGCTCGTGGCTGCAGA
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171697568 164 - 171882078 GTGACTGGGA-----AGTGGGC---------AGTGACCG---GGAGGAGGAGGAGCCG-GGGTTGACCAGCCGGGCAGGGAGCATCCGCCAGGGGGTTTGC-AGG-AACAGAAGCCC--A-GGC-GGGACGTCT-GCACATTCGGAAGAACAAGCTCAGGAGCACCCACCAGAGGCTCGTGGCTGCAGA
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          165597 164 +  25972781 GTGACTGGGA-----AGTGGGC---------AGTGACCG---GGAGGAGGAGGAGCCG-GGGTTCACCAGCCGGTCAGGGAGCATCCGCCAGGGGGTTTGC-AGG-AACAGAAGCCC--A-GGC-GAGACGTCT-GCACATTCGGAAGAACAAGCTCAGGAGCACCCACCAGAGGCTCGTGGCTGCAGA
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          118517 167 -   1025902 GTGACTGGGA-----AGTGGGC---------AGTGACCGGGAGGAGGAGGAGGAGCCT-GGGTTCACCAGCCGGGCAGGGAGCATCCGCCAGGGGGTTTGC-AGG-AACCGAAGCCC--A-GGC-GGCACGTCT-GCACATTCGGAAGAACAAGCTCAGGCGCCCCCACCAGAGGCTCGTGGCTGCAGA
i cerAty1.NW_012001098v1       C 0 I 2
s chlSab2.chrUn_KE147541v1        103549 164 -    811265 GTGACTGGGA-----AGTGGGC---------AGTGACAG---GGAGGAGGAGGAGCCT-GGGTTCACCAGCCGGGCAGGGAACATCGGCCAGGGGGTTTGC-AGG-AACAGAAGCCC--A-GGC-GGGATGTCT-GCACATTCGGAAGAACAAGCTCAGGAGCCCCCACCAGAGGCTCTTGGCTGCAGA
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1           22934 135 -    350446 GTGACTGGGA-----AGTGGGC---------AGTGACCG---GGAGGAGGAGGAGCCT-GGGTTCACCAGCCGGGCAGGGAGCATCCGCCAGGGGGTTTGC-AGG-AACCGAAGCCC--A-GGCGGGGACGTCT-GCACATTCGGAAGAGCAAGCTCAG------------------------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185264 162 +   1230721 GTGACTGGGA-----AGCGGGC---------AGTGACAG---GGAGGAGGAGGAGCCT-GGGTTCACCAGCCGGGCAGGAAGCATCTGCCAGGGGGTTTGC-AGG-AACAGAAGCCC--A-GGC-GGGACGTCT-GCACATTCGGAAGAGCAAGTTCAGGAGAACCCCCCAGAGGCTCGTGGGTGC--C
i colAng1.NW_012115411v1       C 0 I 2
s calJac3.chrY                     40458 157 +   2853901 -------GGA-----AGTGGGC---------AGTGGCCA---GGAGGAGGTGGAGCTT-GGGTTTCACACCTGGGCAGGGAGCAGCCACCAGGGGGTTGGT-GGGCAACAGAAGCCC--A-GGC-GGGACGTCC-CCACAGC-AGAAGAGCAAGCTCAGGAGCCTCTGCCACGGGCTCGTGTCTGTGGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                135934 150 +    465904 GGTACTGGGA-----GGCGGGC---------AGTGGCAG---GGAGGAGGTGGAGCTT-GAGTTTCCCACCTGGGCAGGGAGCAGCCACCAGGGGGTTGGC-GGGAAACAGATGCCC--ACAGC-GG-----------------GAGGAGCAAGCTCAGGAGCCTCTGCCACGGGCTCGTGGCCATGCC
i saiBol1.JH378345             I 7 C 0
s cebCap1.NW_016107987v1          207434 165 -    735872 GTGACTGGGA-----AATGGGC---------AGTGGCAG---GGAGGAGGTGGAGCTT-GGGTTTCCCACCTGGGCAGGGAGCAGCCACAGGGGGGCTGGT-GGGAAACAGAAGCCC--A-GGC-GGGACATCC-CCACAGCGGGAAGAACAAGCTCAGGAGCCTCTGCCATGGGCTCGTGGCTGTGGC
i cebCap1.NW_016107987v1       I 58 C 0
s otoGar3.GL873584                 99996 171 +  11138919 GTGGCAGAAATTCCCACTGGGCTGGAATGGGAAAGGCAG---GGAGGCCACTGAGCTC-GGTTTCCCCAT---GCTGGGAAGCAGCAGTAAGAGGAAC--T-AGA-AATAGAAACCA--G-AGC-AAAGGGTCCAGCACAGTCAGAAGACCAAG-GCAGCAACATCTGTTAGGGGCT--GGGGTGTGAC
i otoGar3.GL873584             C 0 C 0

a score=81719.000000
s hg38.chrX_KI270880v1_alt         54932 26 +    284869 CAACGTTGGCCGTGGA--AGGCTGTGCC
s panTro5.chrX                    176381 26 + 155549662 CAACGTTGGCCGCGGA--AGGCTGTGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          123184 25 +    417917 CAACGTTGGCCGCGGA--AGGCTGTCC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111319 28 + 149150640 CTACGTCAGCCGCGGAAGAGGCTGTGCC
i rheMac8.chrX                 I 2 C 0
s macFas5.chr7                 171697734 26 - 171882078 CTACGTCAGCCGCGGA--AGGCTGTGCC
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          165763 26 +  25972781 CTACGTCAGCCGCGGA--AGGCTGTGCC
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1          118686 26 -   1025902 CTACGTTAGCCGCGGA--AGGCTGTGCC
i cerAty1.NW_012001098v1       I 2 C 0
s chlSab2.chrUn_KE147541v1        103715 26 -    811265 CTACGTTAGCCGCGGA--AGGCTGTGCC
i chlSab2.chrUn_KE147541v1     I 2 C 0
s manLeu1.NW_012108508v1           23069  5 -    350446 -----------------------GCGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185428 26 +   1230721 CTACGTTAGCCGCGGA--AGGCTGTGCC
i colAng1.NW_012115411v1       I 2 C 0
s calJac3.chrY                     40615 24 +   2853901 TGATGTCAG-CGTGGA--AGGCTGCGC-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                136084 24 +    465904 TGACGTTGG-CGTGGA--AGGCTGTGA-
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          207599 24 -    735872 TGATGTTCA-CGTGGA--AGGCTGTGC-
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                100167  0 +  11138919 C
e panPan2.chrUn_NW_014024225v1     94065 5319 +    105888 M

a score=29167.000000
s hg38.chrX_KI270880v1_alt         54958 4 +    284869 CGTC
s panTro5.chrX                    176407 4 + 155549662 CGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99384 4 +    105888 CGTC
i panPan2.chrUn_NW_014024225v1 M 5319 C 0
s gorGor5.CYUI01015925v1          123209 4 +    417917 CGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111347 4 + 149150640 TGTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171697760 4 - 171882078 TGTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          165789 4 +  25972781 TGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          118712 4 -   1025902 TGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        103741 4 -    811265 TGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23074 4 -    350446 TGTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185454 4 +   1230721 TGCC
i colAng1.NW_012115411v1       C 0 I 19
s calJac3.chrY                     40639 4 +   2853901 CGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                136108 4 +    465904 TGTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          207623 4 -    735872 CGTC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                100167 2 +  11138919 --TC
i otoGar3.GL873584             C 0 C 0

a score=7491.000000
s hg38.chrX_KI270880v1_alt         54962 3 +    284869 AGA
s panTro5.chrX                    176411 3 + 155549662 AGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99388 3 +    105888 AGA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123213 3 +    417917 AGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111351 1 + 149150640 --A
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171697764 1 - 171882078 --A
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          165793 1 +  25972781 --A
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          118716 1 -   1025902 --A
i cerAty1.NW_012001098v1       C 0 I 2
s chlSab2.chrUn_KE147541v1        103745 1 -    811265 --A
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1           23078 1 -    350446 --A
i manLeu1.NW_012108508v1       C 0 I 2
s calJac3.chrY                     40643 1 +   2853901 --A
i calJac3.chrY                 C 0 I 2
s saiBol1.JH378345                136112 1 +    465904 --A
i saiBol1.JH378345             C 0 I 2
s cebCap1.NW_016107987v1          207627 1 -    735872 --A
i cebCap1.NW_016107987v1       C 0 I 2
s otoGar3.GL873584                100169 3 +  11138919 AGA
i otoGar3.GL873584             C 0 C 0
e colAng1.NW_012115411v1          185458 19 +   1230721 I

a score=2237443.000000
s hg38.chrX_KI270880v1_alt         54965 357 +    284869 GGACCCCTGAAAACAGTACCGTGCTG---CCCGGCCG-GGAGCGTCCGAAGGCGGAGGTGCGGCACCCCAACACGTCCAGTGGCTCCAACACGGGTGCTCCCTGACAAC---CCTGAGGGTGTGTCCAAGTGGGGTGGACCC--AACAGACAGAGCCCACACTCATGCGCGGAGTGAAAGCAGCCAGG-AAACGTCCCCTTCTCCCCCAACACCACCCCCACAAATACCCCCAAATATGCCTGTAATTCCTCCACCACCCCTCAGACAACATGCATTTCACAC---GTCTGTCCTCACTCCCTAAAAACGTGGAAACCTATTTTCTGTAAAATGAAGCAAACTTCTGTAAACGGAATTCATGATTTCCCA
s panTro5.chrX                    176414 357 + 155549662 GGACCCCTGAAAACAGTACTGTGCTG---CCCGGCCG-GGAGCGTCCGAAGGCGGAGGTGCGGCACCCCAACACGTCCAGTGGCTCCAACACGGGTGCTCCCTGACAAC---CCTGAGGGTGTGTCCAAGTGGGGTGGACCC--AACAGACAGAGCCCACACTCATGCGCGGAGTGAAAGTAGCCAGA-AAACGTCCCCTTCTCCCCCAACACCACCCCCACAAATACCCCAAAATACGCCTGTAATTCCTCCACCACCCCTCAGACAACACGCATTTCACAC---GTCTGTCCTCACTCCCTAAAAACGTGGAAACCTATTTTCTGTAAAATGAAGCAAACTTCTGTAAACGGAATTCATGATTTACCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99391 357 +    105888 GGACCCCTGAAAACAGTACCGTGCTG---CCCGGCCG-GGAGCATCCGAAGGCGGAGGTGCGGCACCCCAACACGTCCAGTGGCTCCAACACGGGTGCTCCCTGACAAC---CCTGAGGGTGTGTCCAAGTGGGGTGGACCC--AACAGACAGAGCCCACACTCACGCGCGGAGTGAAAGCAGCCAGG-AAACGTCCCCTTCTCCCCCAACACCACCCCCACAAATACCCCAAAATACGCCTGTAATTCCTCCACCACCCCTCAGACAACACGCATTTCACAC---GTCTGTCCTAACTCCCTAAAAACGTGGAAACCTATTTTCTGTAAAATGAAGCAAACTTCTGTAAACGGAATTCATGATTTCCCA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123216 357 +    417917 GGACCCCCGAAAACGGTACCGTGCTG---CCCGGCCG-GGAGCGTCCGAAGGCGGAGGTGCGGCACCCCGACACTTCCAGTGGCCCCAACACGGGTGCTCCCTGACAAC---CCTGAGGGTGTGTCCAAGTGGGGTGGACCC--AACAGACAGAGCCCACACTCATGCGCGGAGTGAAAGCAGCCAGG-AAACGTCCCCTTCTCCCCCAACACCACACCCACAAATACCCCAAAATACGCCTGTAATTCCTCCACCACCCCTCAGACAACACGCATTTCACAC---GTCTGTCCTCACTCCCTAAAAACGTGGAAACCTATTTTCTGTAAAATGAAGCAAACTTCTGTAAATGGAATTCATGATTTACCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111354 357 + 149150640 GGACCCCTG-AGACAGCACCGTGCTG---CCCAGCCT-GCAGCGTCCCAGGGCGGAGGCGCGGCCCCCAGACACGTCCAGTGGCTCCAACACCGATGCTCCCCGACAACCCTCCTGAGGGTGTGTCCAACTGGGG-GGACCT------GACAGAGCCCACGCTCACGCGGGGAGTGAAAGCAGCCAGG-AAACGCCCGCTTGTCTCCCAGCACCGCCCCCACACATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCTCAGACAGCACGCATTTCACACAACGTCTGTCCTCACTCCCTGAACACGTGGAAACCGATTCTCTGTAAAACGAAACAAACTTCTGTAAACGGAATTCACGGTTTCCCA
i rheMac8.chrX                 I 2 C 0
s macFas5.chr7                 171697767 357 - 171882078 GGACCCCTG-AGACAGCACCGTGCTG---CCCAGCCT-GCAGCGTCCCAGGGCGGAGGCGCGGCCCCCAGACACGTCCAGTGGCTCCAACACCGATGCTCCCCGACAACCCTCCTGAGGGTGTGTCCAACTGGGG-GGACCT------GACAGAGCCCACGCTCACGCGGGGAGTGAAAGCAGCCAGG-AAACGCCCGCTTGTCTCCCAGCACCGCCCCCACACATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCTCAGACAGCACGCATTTCACACAACGTCTGTCCCCACTCCCTGAAAACGTGGAAACCGATTCTCTGTAAAACGAAACAAACTTCTGTAAACGGAATTCACGGTTTCCCA
i macFas5.chr7                 I 2 C 0
s macNem1.NW_012017243v1          165796 353 +  25972781 GGACCCCTG-AGACAGCACCGTGCTG---CCCAGCCT-GCAGCGTCCCAGGGCGGAGGCGCGGCCCCCAGACACGTCCAGTGGCTCCAACACCGATGCTCCCCGACAACCCTCCTGAGGGTGTGTCCAACTGGGG-GGACCT------GACAGAGCCCACGCTCACGCGGGGAGTGAAAGCAGCCAGG-AAACGCCCGCTTGTCTCCCAGCACCGCCCCCACACATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCTCAGACAGCACGCATTTCACACAACGTCTGTC----CTCCCTGAAAACGTGGAAACCGATTCTCTGTAAAATGAAACAAACTTCTGTAAACGGAATTCACAGTTTCCCA
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1          118719 356 -   1025902 GGACCCCTG-AGACAGCACCGTGCTG----CCAGCCT-GCAGCGTCCCAGGGCGGAGGCGCGGCCCCCAGACACGTCCAGTGGCTCCAACACCGACGCTCCCTGAGAACCCTCCTGAGGGTGTGTCCAACTGGGG-GAACCT------GACAGAGCCCACGCTCACGCGGGGAGTGAAAGCAGCCAGG-AAACGCCCGCTTGTCTCCCAGCACCGCCCCCACAAATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCGCAGACAGCACGCATTTCACACAATGTCTGTCCTCACTCCCGGAAAACGCGGAAACCGATTCTCTGTAAAATGAAGCAAACTTCTGTAAACGGAATTCACGGTTTCCCA
i cerAty1.NW_012001098v1       I 2 C 0
s chlSab2.chrUn_KE147541v1        103748 355 -    811265 GGACCCCTG-AGACAGCACCGTGCTG---CCCAGCCT-GCAGCGTCCCAGGGCAGAGGCGCGGCCCCCAGATACGTCCAGCGGCTCCAACAC-GATGCTCCCTGACAACCCTCCTGAGGGTGTGTCCAACT-GGG-GGACCT------GACAGAGCCCACACTCACGGGGGGAGTGAACGCAGCCAGG-AAACGCCCGCTTCTCTCCCAGCACTGCCCCCACAAATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCGCAGACAGCACGCATTTCACACAAGGTCTGTCCTCACTCCCGGAAAACACGGAAACCGATTCTCTGTAAAATGAAGCAAACTTCTGTAAACGGAATTCACGGTTTCCCA
i chlSab2.chrUn_KE147541v1     I 2 C 0
s manLeu1.NW_012108508v1           23081 357 -    350446 GGACCCCTG-ACACAGCACCGTGCTG---CCCAGCCT-GCAGTGCCCCAGGGCGGAGGCGCGGCCCCCAGACACGTCCAGTGGCTCCAACACGGATGCTCCCTGAGAAGCCTCCTGAGGGTGTGTCCAACTGGGG-GGACCT------GACAGAGCCCACGCTCACGCGGGGAGTGAAAGCAGCCAGG-AAACGCCCGCTTGTCTCCCAGCACCGCCCCCACAAATACCCCAAAATAAGCCCGTGATTCCTCCACCACCCCGCAGACAGCACGTATTTCACACAATGTCTGCCCTCACTCCCTGAAAACGCGGAAACCGATTGTCTGTAAAATGAAGCAAACTTCTGTCAACGGAATTCACGGTTTCCCA
i manLeu1.NW_012108508v1       I 2 C 0
s colAng1.NW_012115411v1          185477 350 +   1230721 GGACCCCTG-AAACAGCACCGTGCTG---CCCAGCCT-GCAGCGTCCCGGGGCGGAAGCA-----CCCAGACACGTCCAGTGGCCCCAACACGGATGCTCCCTGACAACCCTCCTGAGG--GTGTCCAACTGGGG-GAAGCT------GACAGAGCCCACGCTCATGCGGGGAGTGAAAGCAGCCAGG-AAACACCCCCTTCTCTCTCAACACCGCCCCCACAAATACCCCAAAATAAGCCTGTAATTCCTCCATCACCCCTCAGACAACACGCGTTTCACACAATGTCTGTCCTCGCTCCCGAAAAACGTGGAAACCCATTTTCTGTACAATGAAGCAAACTTCTGTAAACAGAATTCACGGTTTCCCA
i colAng1.NW_012115411v1       I 19 C 0
s calJac3.chrY                     40646 362 +   2853901 GGACTCCTGAAAACAGCACTGTGCTG---CCCTGCCT-GGAGTGTCCGAGGGCAGAGGCGCCGCACCCCAACACTTCCAGTGGCTCCACCAGGGACACCCCCAGATGACCCTCCTAAGGACGTGTCCAAGTGGGGTGGACCCATGACAAACAGAACCCACGCTCATGCGGGCAGTGAAGGCAGCGAGACACAC-CCCCCTTCTC-CCCAACACCACCCCCACAAACACCCCAAAATGAGCCTGTAACTCACCCACCAACCCTCAGAGACCACGCACTT--CACAGTGTCGATTCTCACTCCCTAAAAACGTGGAAACCCGTTTTCCATAAAATGAAGCAAACGTCTGCAGAAGGAATTCCTGGTTTCCCA
i calJac3.chrY                 I 2 C 0
s saiBol1.JH378345                136115 358 +    465904 GGACTCCTCGGAACGGCAGCGTGCTG---CCCTGCCC-GGAACGTCTGAGGGCAGAGGCACCGCACCCCGACACTTCCAGTGGCTCCAACAGGGACGCCCCCCGATGCCCCTCCCGAGGACGTGTCCACGTGGGGTGGACCC-TGACAAACAGGACCCACGCTCACGCAGGCAGTGAAGGCAGCTGGG-ACGC-CCCTCTTCTC-CCCAACACCG-CCCCACAAACACCCGAAGATGAGCCTGTAACTCACCCACCAACCCTCAGAGAACACACTCTG--CACAAAGTCGATTCTCACT-CCTGAAGACGTGGAAACCCATTTTCCGCAAAGTGAAGCAGACTTCCGTAAACAGAATTCCTGGTTTCCCG
i saiBol1.JH378345             I 2 I 78
s cebCap1.NW_016107987v1          207630 363 -    735872 GGACTCCTGAGAACAGCACCGTGCTG---CCCTGCCT-GGAGCGTCCGAGGGCAGAGGTGCCACATCCCGACAATTCCAGTGGCTCCAACAGGGACGCCCCCAGATGCCCCTCCCGAGGACGTGTCCAAGTGGGGTGGGCCCCTGACAAACAGAACCCACGCTCATGCGGGCAGTGAAGGCGGCCGGG-ACACGCCCCGTTCTC-CCCAATGCCG-CCCCACAAACACCCCAAGATGAACCCGGAAGTCACCCAGCAACCCTCAGAGAACACGCACTTCACACAATGTCAATTCTCACTCCCTGAAAACGTGGAAACCCATTTTCCGTAAAGTGAAGCAAACTTCTGTAAACGGAATTCCTGGTTTCCCA
i cebCap1.NW_016107987v1       I 2 I 638
s otoGar3.GL873584                100172 294 +  11138919 GGGTCACAGAAAGTGACACAGTCACAGGCCCCTGCAGAAGAGTGTCTGAGGGTGGAG-------------------CCTGC-GCCCCACCACAGAC-CTCACCAACCAGTCACCCAGGGCTGCCTCT-------GTGTCCCT-AGTCAAACAG----------CATGGGTGG---------GGCCAGG-AGTC--CCTATATTCCTCCA----CTCCCCTACAAA--------------CCTACAGTCCCTCCAGTACACTTCAGAGAACAC-----TCAGACAATAAATGTTCTCATTCCTAACAACAACTGAAAC--ATTTTCTGTGAAATGAACCAACCTCCTACTAAGTGAATCCCCAGTTTGTCA
i otoGar3.GL873584             C 0 C 0

a score=147160.000000
s hg38.chrX_KI270880v1_alt         55322 30 +    284869 GAAACTGACTTTTTAAAAATAA-ACAGTCCT---
s panTro5.chrX                    176771 30 + 155549662 GAAACTGACTTTTAAAAAATAA-ACAGTCCT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99748 30 +    105888 GAAACTGACTTTTTAAAAATAA-ACAGTCCT---
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123573 30 +    417917 GAAACTGACTTTTTAAAAATAA-ACAGTCCT---
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111711 30 + 149150640 AAAAGTGACTTTTAAAAAACAA-ACAGTCCT---
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171698124 30 - 171882078 AAAAGTGACTTTTAAAAAACAA-ACAGTCCT---
i macFas5.chr7                 C 0 I 2
s macNem1.NW_012017243v1          166149 30 +  25972781 AAAAGTGACTTTTAAAAAACAA-ACAGTCCT---
i macNem1.NW_012017243v1       C 0 I 71
s cerAty1.NW_012001098v1          119075 30 -   1025902 AAAAGTGACTCTTTAAAAACAA-ACAGTCCT---
i cerAty1.NW_012001098v1       C 0 I 52
s chlSab2.chrUn_KE147541v1        104103 30 -    811265 AAAAGTGACTTGTTAAAAACAA-ACAGTCCT---
i chlSab2.chrUn_KE147541v1     C 0 I 52
s manLeu1.NW_012108508v1           23438 30 -    350446 AAAAGTGACTCTTTAAAAACAA-ACAGTCCT---
i manLeu1.NW_012108508v1       C 0 I 52
s colAng1.NW_012115411v1          185827 30 +   1230721 AAAACTGACTTGTTAAAAATAA-ACAGTCCT---
i colAng1.NW_012115411v1       C 0 I 52
s calJac3.chrY                     41008 28 +   2853901 --ACGTGACTCCAGTAAAACAA-ACAGTCCT---
i calJac3.chrY                 C 0 I 52
s otoGar3.GL873584                100466 34 +  11138919 AAAAGTAACTTCTATAAAACAGTCCAGACTTTCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207993 638 -    735872 I
e saiBol1.JH378345                136473 78 +    465904 I

a score=21553.000000
s hg38.chrX_KI270880v1_alt         55352 4 +    284869 CACA
s panTro5.chrX                    176801 4 + 155549662 CACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99778 4 +    105888 CACA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123603 4 +    417917 CACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111743 2 + 149150640 --CA
i rheMac8.chrX                 I 2 I 63
s macFas5.chr7                 171698156 2 - 171882078 --CA
i macFas5.chr7                 I 2 I 58
s cerAty1.NW_012001098v1          119157 4 -   1025902 CACA
i cerAty1.NW_012001098v1       I 52 C 0
s chlSab2.chrUn_KE147541v1        104185 4 -    811265 CACA
i chlSab2.chrUn_KE147541v1     I 52 C 0
s manLeu1.NW_012108508v1           23520 4 -    350446 CACA
i manLeu1.NW_012108508v1       I 52 C 0
s colAng1.NW_012115411v1          185909 4 +   1230721 CACA
i colAng1.NW_012115411v1       I 52 C 0
s calJac3.chrY                     41088 4 +   2853901 CACA
i calJac3.chrY                 I 52 C 0
s saiBol1.JH378345                136551 4 +    465904 CACA
i saiBol1.JH378345             I 78 C 0
s otoGar3.GL873584                100500 4 +  11138919 TGCA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          207993 638 -    735872 I
e macNem1.NW_012017243v1          166179 71 +  25972781 I

a score=65555.000000
s hg38.chrX_KI270880v1_alt         55356 22 +    284869 GGTGCATCGTCACC-----------------ACAG-CCCC
s panTro5.chrX                    176805 22 + 155549662 GGTGCATCGTCACC-----------------ACAG-CCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99782 22 +    105888 GGTGCATCGTCACC-----------------ACAG-CCCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123607 22 +    417917 GGTGCATCGTCACC-----------------ACAG-CCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          119161 22 -   1025902 GGTGCAGCGTCACC-----------------CCAG-CCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104189 22 -    811265 GGTGCATTGTCACC-----------------CCAG-CCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23524 22 -    350446 GGTGCATCGTCACC-----------------CCAA-CCCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185913 23 +   1230721 GGTGCATCCTCACC-----------------GCAGCCCCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     41092 22 +   2853901 GGTGCTTGGTCACC-----------------ACAG-GCCC
i calJac3.chrY                 C 0 I 899
s saiBol1.JH378345                136555 22 +    465904 GGTGCTCGGTCACC-----------------ACGG-GCCC
i saiBol1.JH378345             C 0 I 1
s otoGar3.GL873584                100504 39 +  11138919 TGGGCTCTGCCACCCGGTATCTGGCTCCCCTAGAG-CTCC
i otoGar3.GL873584             C 0 I 1
e cebCap1.NW_016107987v1          207993 638 -    735872 I
e rheMac8.chrX                    111745 63 + 149150640 I
e macNem1.NW_012017243v1          166179 71 +  25972781 I
e macFas5.chr7                 171698158 58 - 171882078 I

a score=55415.000000
s hg38.chrX_KI270880v1_alt         55378 16 +    284869 CCA---CAGAAGAGCCAGG
s panTro5.chrX                    176827 16 + 155549662 CCA---CAGAAGAGCCAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99804 16 +    105888 CCA---CAGAAGAGCCAGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123629 16 +    417917 CCA---CAGAAGAGCCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          119183 16 -   1025902 CCG---CAGAAGAGCCAGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104211 16 -    811265 CCG---CAGAAGAGCCAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23546 15 -    350446 CGG---CAGAAGAG-CAGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185936 16 +   1230721 CCG---CAGGAGAGCCAGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42013 16 +   2853901 CCA---CAGAAGAGTCACG
i calJac3.chrY                 I 899 C 0
s saiBol1.JH378345                136578 15 +    465904 ACA---CAG-AGAGTCATG
i saiBol1.JH378345             I 1 C 0
s cebCap1.NW_016107987v1          208631 16 -    735872 CCA---CAGAAGAGTCACA
i cebCap1.NW_016107987v1       I 638 C 0
s otoGar3.GL873584                100544 19 +  11138919 CCAAGTCACAGCAGCTAGA
i otoGar3.GL873584             I 1 C 0
e rheMac8.chrX                    111745 63 + 149150640 I
e macNem1.NW_012017243v1          166179 71 +  25972781 I
e macFas5.chr7                 171698158 58 - 171882078 I

a score=182328.000000
s hg38.chrX_KI270880v1_alt         55394 47 +    284869 GCCCCACT-GC----------AGGGCTGAAGGGCTTCCTCATCCAG------CCACGTGCGAGC
s panTro5.chrX                    176843 47 + 155549662 GCCCCACT-GC----------AGGGCTGAAGGGCTTCCTCATCCAG------CCACGTGCGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99820 47 +    105888 GCCCCACT-GC----------AGGGCTGAAGGGCTTCCTCATCCAG------CCACGTGCGAGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123645 47 +    417917 GCCCCACT-GC----------AGGGCTGAAGGGCTTCCTCATCCAG------CCACGTGCGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111808 47 + 149150640 ACCCCAGC-CC----------CCCGCAGAAGGGCTGCTTCATCCAG------CCACGGGCGAGC
i rheMac8.chrX                 I 63 C 0
s cerAty1.NW_012001098v1          119199 47 -   1025902 GCCCCGCT-GC----------AGGGAAGAAGGGCTGCTTCATCCAG------CCACGGGCGAGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104227 47 -    811265 GCCCCGCT-GC----------AGGGAAGAAGGGGTGCTTCACCCAG------CCACGGGCGAGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23561 47 -    350446 GCCCCGCT-GC----------AGGGAAGAAGGGCTGCTTCATCCAG------CCACGGGCGAGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          185952 48 +   1230721 GCCCCGCTCGC----------AAGGCAGAAGAGCGTCTTCATCCAG------CCACGTGCGAGC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42029 52 +   2853901 GCCCCTCT-GC----------AGGGCAGAAG-GCATCCTCGTCCAGCCACGCCCACGTGCGAGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                136593 52 +    465904 GCCCTGCT-GC----------AGGGCGGAAG-GCTTCCTCGCCCAGCCATGTCCACGTGTGAGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          208647 46 -    735872 GCCCCCCT-GC----------AGGGCAGAAG-GCTTCCTCGTCCAG------CCACGTGTGAGC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                100563 44 +  11138919 -GCACACA-GCAACAGTCAGGAGGGAGGGAGGAAT------TCCAG--------ATGTAC----
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          166179 71 +  25972781 I
e macFas5.chr7                 171698158 58 - 171882078 I

a score=-3590.000000
s hg38.chrX_KI270880v1_alt         55441 1 +    284869 -T
s panTro5.chrX                    176890 1 + 155549662 -T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99867 1 +    105888 -T
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123692 1 +    417917 -T
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111855 1 + 149150640 -T
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698216 1 - 171882078 -T
i macFas5.chr7                 I 58 C 0
s cerAty1.NW_012001098v1          119246 1 -   1025902 -T
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104274 1 -    811265 -T
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23608 1 -    350446 -T
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186000 1 +   1230721 -T
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42081 1 +   2853901 -A
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                136645 1 +    465904 -T
i saiBol1.JH378345             C 0 I 550
s cebCap1.NW_016107987v1          208693 1 -    735872 -A
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                100607 1 +  11138919 A-
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          166179 71 +  25972781 I

a score=44989.000000
s hg38.chrX_KI270880v1_alt         55442  8 +    284869 AATCACC----T
s panTro5.chrX                    176891  8 + 155549662 AATCACC----T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99868  8 +    105888 AATCACC----T
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123693  8 +    417917 AATCACC----T
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111856  8 + 149150640 CATCACC----T
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698217  8 - 171882078 CATCACC----T
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          119247  8 -   1025902 CATCACC----T
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104275 12 -    811265 CATCACCTAATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23609  8 -    350446 CATCACC----T
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186001  8 +   1230721 CATCACC----T
i colAng1.NW_012115411v1       C 0 I 4
s calJac3.chrY                     42082  8 +   2853901 AACCACC----T
i calJac3.chrY                 C 0 I 2
s saiBol1.JH378345                137196  8 +    465904 AACCACC----T
i saiBol1.JH378345             I 550 I 2
s cebCap1.NW_016107987v1          208694  8 -    735872 AACCACC----T
i cebCap1.NW_016107987v1       C 0 I 309
s otoGar3.GL873584                100608  8 +  11138919 GAGCACC----T
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          166179 71 +  25972781 I

a score=-4639.000000
s hg38.chrX_KI270880v1_alt         55450 4 +    284869 CATT---
s panTro5.chrX                    176899 4 + 155549662 CATT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99876 4 +    105888 CATT---
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123701 4 +    417917 CATT---
i gorGor5.CYUI01015925v1       C 0 C 0
s calJac3.chrY                     42092 2 +   2853901 GA-----
i calJac3.chrY                 I 2 C 0
s saiBol1.JH378345                137206 2 +    465904 GA-----
i saiBol1.JH378345             I 2 C 0
s otoGar3.GL873584                100616 4 +  11138919 ---TAAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           23617 0 -    350446 C
e cebCap1.NW_016107987v1          208702 309 -    735872 I
e chlSab2.chrUn_KE147541v1        104287 0 -    811265 C
e cerAty1.NW_012001098v1          119255 0 -   1025902 C
e colAng1.NW_012115411v1          186009 4 +   1230721 I
e rheMac8.chrX                    111864 0 + 149150640 C
e macNem1.NW_012017243v1          166179 71 +  25972781 I
e macFas5.chr7                 171698225 0 - 171882078 C

a score=451783.000000
s hg38.chrX_KI270880v1_alt         55454 115 +    284869 ---------GACTCTGCGACCAGCGAG----------CCCGCACCGCCCAGCACCTCCC-ACCATCTAGAGCAAATCCCGCACGAGGCTGA-TCTCGCTCTT-------CGCAGGTTAAGAGGATTTT-AAAGACACCAGCCTC--------------------
s panTro5.chrX                    176903 108 + 155549662 ---------GACTCTGCGACCAGCGAG----------CCCGCACCGCCCAGCACCTCCC-ACCATCTAGAGCAAATCC-------GGCTGA-TCTCACTCTT-------CGCAGGTTAAGAGGATTTT-AAAGACACCAGCCTC--------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1     99880 125 +    105888 ---------GACTCTGCGACCAGCCAGCTGGCATCGCCCAGCACCTCCCAGCACCTCCC-ACCATCTAGAGCAAATCCCGCACGAGGCTGA-TCTCACTCTT-------CGCAGGTTAAGAGGATTTT-AAAGAAACCAGCCTC--------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123705 115 +    417917 ---------GACTCTGCGACCAGCGAG----------CCCGCACCGCCCAGCAGCTCCC-ACCATCTAGAGCAAATCCCGCACGAGGCTGA-TCTCACTCTT-------TGCAGGTTAAGAGGATTTT-AAAGAAACCAGCCTC--------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111864 112 + 149150640 ---------GACTCTGCAACCAGCAAA----------CACGCAC----------CTGCC-ACCGTCTAACGCAAATCCCGCACGGGGCTGATTCTCACTCTCAG-GGTCTGCAGGTTAAGACCATTGT-AACAAAACCAGCCTC--------------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698225 112 - 171882078 ---------GACTCTGCAACCAGCAAA----------CACGCAC----------CTGCC-ACCGTCTAACGCAAATCCCGCACGGGGCTGATTCTCACTCTCAG-GGTCTGCAGGTTAAGACCATTGT-AACAAAACCAGCCTC--------------------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166250 112 +  25972781 ---------GACTCTGCAACCAGCAAA----------CACGCAC----------CTGCC-ACCGTCTAACGCAAATCCCGCACGGGGCTGATTCTCACTCTCAG-GGTCTGCAGGTTAAGACCATTTT-AACAAAAGCAGCCTC--------------------
i macNem1.NW_012017243v1       I 71 C 0
s cerAty1.NW_012001098v1          119255 111 -   1025902 ---------GACTCTGCAACCAGCAAA----------CACGCAC----------CTGCC-ACCGTCTAACGCAAATCCCGCACGAGGCTGA-TCTCCCTCTTAT-GGTCTGCAGGTTAAGACCATTTT-AACAAAACCAGCCTC--------------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104287 112 -    811265 ---------GACTCTGCAACCAGCAAA----------CACACAC----------CTCCC-ACCCTCTAAAGCAAATTCCGCACGAGGCTGA-TCTCCCTCTTAT-GGTCTGCGGGTTAAGAGCATTTTAAATAAATCCAGCCTC--------------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23617 111 -    350446 ---------GACTCTGCAACCAGCAAA----------CACGCAC----------CTGCC-ACCGTCTAACGCAAATCCCGCACGAGGCTGA-TCTCCCTCTTAT-GGTCTGCAGGTTAAGACCATTTT-AACAAAACCAGCCTC--------------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186013 111 +   1230721 ---------GACTCCGCAACCAGCAGA----------CACGGAC----------CTCCC-ACCGTCTAAAGCAAATACTGCACGAGGCTGA-TCTCACTCTCAG-GGTCTGCAGGTTAAGAGCATTTT-AAAGAAACCAGCCTC--------------------
i colAng1.NW_012115411v1       I 4 C 0
s calJac3.chrY                     42094 101 +   2853901 ---------GACTCTGCAACCACCAAG----------CACACAC----------TGCCC-----------ACAGATCGTGCTTGAAGCTCA-TGTCACTCTGAACGGTATCCAGGTTAAGAGCA-TTT-AAAGAAATCATCCTT--------------------
i calJac3.chrY                 C 0 I 16
s saiBol1.JH378345                137208 102 +    465904 ---------GACTCTGCAACCACCAGG----------CACACAC----------CTCCC-----------GCAGATCGTGCTAAAAGCTCA-GCTCACTCTGAACGGTCTCCAGGTTAGGAGGATTTT-AAAGAAACCGTCCTT--------------------
i saiBol1.JH378345             C 0 I 16
s otoGar3.GL873584                100620 139 +  11138919 CACGGAAGAGAAACCCTAACTACCAA-----------CACCTGT----------CTCCCTAGCTCCTAAAAAAAGTTCCTCCTGAAGCTGA-CCTCACTGTCA--AGTCTCCACATTTACATGACTTT-AGAGAGACTTTCCTTTAAAACGCAGAATAAACCTC
i otoGar3.GL873584             C 0 I 2
e cebCap1.NW_016107987v1          208702 309 -    735872 I

a score=994493.000000
s hg38.chrX_KI270880v1_alt         55569 147 +    284869 GCCCTTACCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGT----CAAAA---ACTCCGAAGGAGTGCAAAAGTT--GATGTGAGATCTTACAGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTTCCTCCCCCTTCAA
s panTro5.chrX                    177011 147 + 155549662 GCCCTTACCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGT----CAAAA---ACTCCGAAGGAGTGCAAAACTT--GATGTGAGATCTTACGGAAAACATTTCAATTAAAATATCAAAAGAAAGAAGTGGGTCTTCCTCCCCCTTCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100005 147 +    105888 GCCCTTACCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGT----CAAAA---ACTCCGAAGGAGTGCAAAAGTT--GATGTGAGATCTTATGGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTTCCTCCCCCTTCAA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123820 146 +    417917 CCCCTTACCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGT----CAAAA---ACTCCAAAGGAGTGCAAAAGTT--GATGTGAGATCTTACGGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTTCCT-CCCCTTCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    111976 145 + 149150640 GCCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGTCAGACAAAT---ACTCTGAAGGAGTGTAAAAGCT--GATGT--GATCTGAGAGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTCCCTCCCCCT----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698337 149 - 171882078 GCCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGTCAGACAAAT---ACTCTGAGGGAGTGTAAAAGCT--GATGT--GATCTGAGAGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTCCGTCCCCCTTCAA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166362 149 +  25972781 GCCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCGGGAAGACAGAGGTCAGACAAAT---ACTCTGAAGGAGTGTAAAAGTT--GATGT--GATCTGAGAGAAAACATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTCCCTCCCCCTTCAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          119366 146 -   1025902 GCCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGTCAGACAGAA---ACTCTGAAGGAGTGTAAAAGTT--GATGT--GATCTGAGAGAAAAAATTTCAATTAAAATATCAACAGA---AAGTGGGTCTCCCTTCCCCTTCAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104399 149 -    811265 ACCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGTCAGACAGAA---ACTCTGAAGGATTGTCAAAGTG--GCTGT--GATGTGAGAGAAAAAATTTCAATTAAAACATCAACAGAAAGAGGTGGGTCTCCCTCCCCCTTCAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23728 149 -    350446 GCCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGGAGACAGAGATCAGACAGAA---ACTCTGAAGGAGTGTAAAAGTT--GATGT--GATCTGAGAGAAAAAATTTCAATTAAAATATCAACAGAAAGAAGTGGGTCTCCCTCCCCCTTCAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186124 141 +   1230721 ACCCTTATCCACTTAC-AGGCA----------AAATGTCAAAACCTGGAAGACAGAGGT----CAAAA---ACTCTGAAGGCGT-TCAAAGTT--GATGT--GATCCGAGAGAAAAAATTTCAACTAAAATATCAACAGC---AAGTGGGTCTCCCTCCCCCTTCAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42211 140 +   2853901 GCCCCTACCCACTTGC-AGGCA----------AAATGTGAAAACCTGGAAGACAGAGGTCAGATGAAA---ACTCTGA--TAGTGTCAACGCT--GACGT--GATCTTAGAAGAAAAGTTTCAGTTAAAG-------GGAAAGAAGTGGGTCTCCCTCCCCTTTCAA
i calJac3.chrY                 I 16 C 0
s saiBol1.JH378345                137326 142 +    465904 GCCCCTACTCACTTAC-AGGCA----------GAACGTCCAAACCTGGAAGACAGAGGTCAGATGAAA---ACTCTGAAGGAGTGTAAAAGCT--GACGT--GATCTTAGAGAAAAAATTCCAATGAAAG-------AGAAAGAAGTGGGTCTCCCTCCCCCTTTAA
i saiBol1.JH378345             I 16 C 0
s cebCap1.NW_016107987v1          209011 142 -    735872 GCCCCTACCCACTTAC-AGGCA----------AAATGTCAAAGCCTGGAAGACAGAGGTCAGGTGAAA---ACTCTGAAGGAGTGTAAAAACT--GACGT--GATCTTAGAGAAAAAATTTCAATTAAAG-------AGAAAGAAGTGGGTCTCCCTCCCGCTTCAA
i cebCap1.NW_016107987v1       I 309 I 114
s otoGar3.GL873584                100761 159 +  11138919 GCTactatgcacaaactatgcacaaactTAACAAAATTCAAAATGTGGAAGACAGAGGTTGGACAGAAAACACTCAAAGGGAGTGTAAAGGCTCAGAAGT--GACATTAG---AAAAGTCCTAGTTAAAATATCAACAGA---AAGCAGGTCTCTCTACCCACCCAA
i otoGar3.GL873584             I 2 C 0

a score=179142.000000
s hg38.chrX_KI270880v1_alt         55716 40 +    284869 GCAGGATGCCTTGGTTCACCTTGATG-TTA-GGCCAC------------------------------TAGTT
s panTro5.chrX                    177158 40 + 155549662 GCAGGATGCCTTGGTTCAGCTTGATG-TTA-GGCCAC------------------------------TAGTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100152 40 +    105888 GCAGGATGCCTTGGTTCAGCTTGATG-TTA-GGCCAC------------------------------TCGTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          123966 40 +    417917 GCAGGATGCCTTGGTTCAGCTTGATG-TTA-GGCCAC------------------------------TCGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112121 21 + 149150640 --------------------TTGAGGTTTA-GGCCAC------------------------------CAGTT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698486 41 - 171882078 GCAGGATGCTCTGGTTCAACTTGAGGTTTA-GGCCAC------------------------------CAGTT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166511 41 +  25972781 GCAGGATGCTCTGGTTCAACTTGAGGTTTA-GGCCAC------------------------------CAGTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          119512 41 -   1025902 GCAGGATGCTCTGGTTCAACTTGAGGTTTA-GGCCAC------------------------------TTGTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104548 41 -    811265 GCAGGACGCTTCGGTCCAACCTGAGATTTA-GGCCAC------------------------------CAGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23877 41 -    350446 GCAGGATGCTCTGGTTCAACTTGAGGTTTA-GGCCAC------------------------------CCGTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186265 41 +   1230721 GCAGGACGCTTCGGTTCAACTTGAGGTTTA-GGCCAC------------------------------TAGTT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42351 42 +   2853901 CGCGGATGCTTTGGCTCAAGCTGATGGTCAGGGCCAC------------------------------TAGCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137468 41 +    465904 ACCGGATGCTTTGGGTCAACCTGACGTTTC-GGCCGC------------------------------TAGCT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                100920 70 +  11138919 CCAGGACACTTTGGTT-AATTGGATGTTTG-GGCCACTTCACAGTGCAAACCAAGAGAAAACGCCATTAGTT
i otoGar3.GL873584             C 0 I 151
e cebCap1.NW_016107987v1          209153 114 -    735872 I

a score=130031.000000
s hg38.chrX_KI270880v1_alt         55756 23 +    284869 CCAGACTCCTGGAACTGAGTTTG
s panTro5.chrX                    177198 23 + 155549662 CCAGACTCTTGGAACTGAGTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100192 23 +    105888 CCAGACTCTTGGAACTGAGTTTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124006 23 +    417917 CCAGACTCTTGGAACTGAGTTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112142 23 + 149150640 CCAGACTCCTGGAACCAAGCGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698527 23 - 171882078 CCAGACTCCTGGAACCAAGCGTG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166552 23 +  25972781 CCGGACTCCTGGAACCAAGCGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          119553 23 -   1025902 CCAGACTTCTGGAACCGAGTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104589 23 -    811265 CCCGACTCCTGGAACCGAGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           23918 23 -    350446 TCAGACTCCTGGAACTGAGTGTG
i manLeu1.NW_012108508v1       C 0 I 307
s colAng1.NW_012115411v1          186306 23 +   1230721 CCAGACTCCTGGAAGTGAGTGTG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42393 23 +   2853901 ACAGACTCCTGGAACCGAGTTTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137509 23 +    465904 CCAGACTCCTGGAACTGAGGTGG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e otoGar3.GL873584                100990 151 +  11138919 I

a score=55970.000000
s hg38.chrX_KI270880v1_alt         55779 13 +    284869 AAAAGCGCGTCTG
s panTro5.chrX                    177221 13 + 155549662 AAAAGCGCGTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100215 13 +    105888 AAAAGCGCGTCTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124029 13 +    417917 AAAAGCGCGTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112165 13 + 149150640 AAAAGTGGGTCTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698550 13 - 171882078 AAAAGTGGGTCTG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166575 13 +  25972781 AAAAGTGGGTCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          119576 13 -   1025902 AAAAGTGGGTCTG
i cerAty1.NW_012001098v1       C 0 I 678
s chlSab2.chrUn_KE147541v1        104612 13 -    811265 AAAAGTGGGTCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24248 13 -    350446 AAAAGTGGGTCTG
i manLeu1.NW_012108508v1       I 307 C 0
s colAng1.NW_012115411v1          186329 13 +   1230721 AAAAGCGGGTCTG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42416  8 +   2853901 AAAAACGC-----
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137532  8 +    465904 AAAAATGC-----
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e otoGar3.GL873584                100990 151 +  11138919 I

a score=34180.000000
s hg38.chrX_KI270880v1_alt         55792 15 +    284869 ATGTGCCACGTGGGT
s panTro5.chrX                    177234 15 + 155549662 ATGTGCCACGTGGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100228 15 +    105888 ATGTGCCACGTGGCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124042 15 +    417917 ATGTGCCACGTGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112178 15 + 149150640 ATGGACCCCGTGGGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698563 15 - 171882078 ATGGACCCCGTGGGT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166588 15 +  25972781 ATGGACCCCGTGGGT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104625 15 -    811265 ATGGACCACGTGGGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24261 15 -    350446 ATGGACCACTTGGGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186342 15 +   1230721 ACGGACCACTTGGGT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42424  8 +   2853901 --TCTCCGCG-----
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137540  8 +    465904 --CCGCCACG-----
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e otoGar3.GL873584                100990 151 +  11138919 I
e cerAty1.NW_012001098v1          119589 678 -   1025902 I

a score=91360.000000
s hg38.chrX_KI270880v1_alt         55807 24 +    284869 GTGAG--GCGCCCGCCACGCACACCC
s panTro5.chrX                    177249 24 + 155549662 GTGAG--ACGCCCGCCACGCACACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100243 24 +    105888 GTGAG--GCGCCCGCCACGCACACCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124057 24 +    417917 GTGAG--GCGCCCGCCACGCACACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112193 26 + 149150640 GTGAGGCGCCCCCGCCACGCACACCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698578 24 - 171882078 GTGAG--GCCCCCGCCACGCACACCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166603 24 +  25972781 GTGAG--GCGCCCGCCACGCACATCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          120267 24 -   1025902 GTGAG--GCGCCCGCCACGTACACCC
i cerAty1.NW_012001098v1       I 678 I 188
s chlSab2.chrUn_KE147541v1        104640 11 -    811265 GCGAG--GCGCCC-------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24276 24 -    350446 GTGAG--GCGCCCCCCACGCACACCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186357 24 +   1230721 GTGAG--ACGCCCGCCACGCACACCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42432 11 +   2853901 ---------------CACACACACCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137548 11 +    465904 ---------------CACACCCACCC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e otoGar3.GL873584                100990 151 +  11138919 I

a score=131390.000000
s hg38.chrX_KI270880v1_alt         55831 37 +    284869 TGTCTGGATGAAATTCGGATCAGATTCGGCCGCAGCC
s panTro5.chrX                    177273 37 + 155549662 TGTCTGGATGAGATTCGGATCAGATTCGGCCGCAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100267 37 +    105888 TGTCTGGATGAGATTCGGATCAGATTCGGCTGCAGCC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124081 37 +    417917 TGTCTGGATGAGATTCGGATCAGATTCGGCCGCAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112219 37 + 149150640 TGCCTGGATGAGACTCGGATCACATTCGGCCACAGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698602 37 - 171882078 TGCCTGGATGAGACTCGGATCAGATTCGGCCACAGCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166627 37 +  25972781 TGCCTGGATGAGACTCGGATCAGATTCGGCCACAGCC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104651 36 -    811265 -GCCTGGATGAGACTCGGGTCAGATTCGGCCACAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24300 37 -    350446 TGCCTGGATGAGATTCGGATCAGATTCGGCCACAGCC
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     42443 26 +   2853901 GGCCTGGATGAG-----------AGTCGGGCACAGGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137559 26 +    465904 AGCCTGGGTGAG-----------ATTCGGCCCCAGCC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e otoGar3.GL873584                100990 151 +  11138919 I
e cerAty1.NW_012001098v1          120291 188 -   1025902 I
e colAng1.NW_012115411v1          186381  0 +   1230721 C

a score=439192.000000
s hg38.chrX_KI270880v1_alt         55868 103 +    284869 AAACCCTAAATTCTCAAATTATACTGGGATTGTCACAGGAAGA----CTCTTACACGTTTAAATCACATGGTACTCGTAAAACTAACTCATACAATATACACGGGGT
s panTro5.chrX                    177310 103 + 155549662 AAACCCTAAATTCTCAAATTATACCGGGATTGTCACAGGAAGA----CTCTTACACGTTTAAATCACATGGTACTCGTAAAACTAACCCATACAATATACACGGGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100304 103 +    105888 AAACCCTAAATTCTCAGATTATACCGGGATTGTCACAGGAAGA----CTCTTACACGTTTAAATCACATGGTACTCGTAAAACTAACTCATACAATATACACGGGGT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124118 107 +    417917 AAACCCTAAATTCTCAAATTATACCGGGATTGTCACAGGAAGACTCTCTCTCACACGTTTAAATCACATGGTGCTCGTAAAACTAACCCATACAATATACACGGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112256 101 + 149150640 AAACCCTAAGTTCTCCAATTATATCGGGGCTGTCCCGGGAAGA----C--TTACACGTTTAAACCACATGGTACTCGTAAAACTAACTTACACAATATACACGGGTT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698639 103 - 171882078 AAACCCTAAGTTCTCAAATTATATCGGGGCTGTCCCGGGAAGA----CTGTTACACGTTTAAACCACATGGTACTCGTAAAACTAACTTACACAATATACACGGGGT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166664 103 +  25972781 AAACCCTAAGTTCTCCAATTATATCGGGGCTGTCCCGGGAAGA----CTCTTACACGTTTAAACCACATGGTACTCGTAAAACTAACTTATACAATATACACGGGGT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104687 103 -    811265 AAACCCTAAGTTCTCAAATTATATCGGGGCTCTCCCGGGAAGA----CTCTTCCACGTTTAAACCACATGGTACTCGTAAAACTAACTTATACAATATACCCGGGGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24337 103 -    350446 AAACCCTAAGTTCTCAAATTATATCGGGGCTGTCCCGGGAAGA----CTCTTACACGTTTAAACCACATGGTACTCGTAAAACTAACTTATACAAGATACACGGGGT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186381  76 +   1230721 ---------------------------TGCTGTCACGGGAAGA----CTCTTACACGTTTAAACCACATGGTACGTGTAAAACTAACTTATACAATATACGCGGGGT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42469 101 +   2853901 AAAGACGAAGCTCTCAACTGACACAGCGGTCGTCAAGGGAAGA----C--TCACACGTGTAAACGACACGGTGCTCGTACAACTAACCCACAGAACGTACGAGGGGT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137585 101 +    465904 GAAGACTAACCTCTCAACTTATACAGGGATTGTCAAGGGAAGA----C--TCACATGTTTAAACAACATGGGACTCGTACGACTAACCTACACAATGTCCAAGGGAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                101141  86 +  11138919 AAAGACAAAGTTATCGAAGGACACTGGGCCTGTCAAGTGGAGA----GCCGCA-----------GACAGGGAATTTTCAAACCAGATTCCTCAAATATACA------
i otoGar3.GL873584             I 151 C 0
e cebCap1.NW_016107987v1          209153 114 -    735872 I
e cerAty1.NW_012001098v1          120291 188 -   1025902 I

a score=79350.000000
s hg38.chrX_KI270880v1_alt         55971 16 +    284869 ACAGACACAAATTTTA
s panTro5.chrX                    177413 16 + 155549662 ACAGACACAAATTTTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100407 16 +    105888 ACAGACACAAATTTTA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          124225 16 +    417917 ACAGACACAAATTTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112357 16 + 149150640 GCAGACACAAATGTTA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698742 16 - 171882078 GCAGACACAAATGTTA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166767 16 +  25972781 GCACACACAAATGTTA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104790 16 -    811265 GCAGACACAAATGTTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24440 16 -    350446 GCAGACACACAGGTTA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186457 16 +   1230721 ACAGACACAAATGTGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42570 14 +   2853901 --ACAGACACACGTTA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137686 14 +    465904 --AGACACACATCTTA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209267 16 -    735872 ACAGACACACACCTTA
i cebCap1.NW_016107987v1       I 114 C 0
s otoGar3.GL873584                101227 13 +  11138919 ---ATCATAAATTTTA
i otoGar3.GL873584             C 0 C 0
e cerAty1.NW_012001098v1          120291 188 -   1025902 I

a score=26068.000000
s hg38.chrX_KI270880v1_alt         55987 3 +    284869 CTT
s panTro5.chrX                    177429 3 + 155549662 CTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    100423 3 +    105888 CTT
i panPan2.chrUn_NW_014024225v1 C 0 I 2968
s gorGor5.CYUI01015925v1          124241 3 +    417917 CTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112373 3 + 149150640 CCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698758 3 - 171882078 CTT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166783 3 +  25972781 CTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          120479 3 -   1025902 CTT
i cerAty1.NW_012001098v1       I 188 C 0
s chlSab2.chrUn_KE147541v1        104806 3 -    811265 CTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24456 3 -    350446 CTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186473 3 +   1230721 CTT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42584 3 +   2853901 CTT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137700 3 +    465904 CTT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209283 3 -    735872 CTT
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                101240 3 +  11138919 TTT
i otoGar3.GL873584             C 0 C 0

a score=323374.000000
s hg38.chrX_KI270880v1_alt         55990 48 +    284869 CCCTGAGCACTTATGAGAACTGAGATTAAATTTCAAAGCCAgctgggg
s panTro5.chrX                    177432 48 + 155549662 CCCTGAGCACTTATGAGAACTGAGATTAAATTTCAAAGCCAgctgggg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124244 48 +    417917 ACCTGAGCACTTATGAGAACTGAGATTAAATTTCAAAGCCAgctgggg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112376 48 + 149150640 CCCTGAGCACTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698761 48 - 171882078 CCCTGAGCACTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166786 48 +  25972781 CCCTGAGCACTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          120482 48 -   1025902 CCCTGAGCACTAATGATGAATGAGATTAAATTCCAAAGCCggctgggg
i cerAty1.NW_012001098v1       C 0 I 207
s chlSab2.chrUn_KE147541v1        104809 48 -    811265 CCCTGAGCCCTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24459 48 -    350446 CCCTGAGCACTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186476 48 +   1230721 CCCTGAGCACTAATGAGAACTGAGATTAAATTTCAAAGCCggctgggg
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42587 47 +   2853901 CCC-GGGCACTTACGGGAACTGAGATTACATTTCAAAGCCggccgggg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137703 48 +    465904 CCCTGAGCACGTACCCGAACTGAGATGACATTTCAAAGCCggccaggg
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209286 48 -    735872 CCCTGAGCACTTACGGGAACTGAGATTACATTTCAATGCCggccaggg
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                101243 48 +  11138919 CCCCCAGCACTTATCAGAATTGAGATTAACTTTGAAAGCCAATTAGGA
i otoGar3.GL873584             C 0 C 0
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=93305.000000
s hg38.chrX_KI270880v1_alt         56038 25 +    284869 tggaggctcacgcccctactccc--ag--
s panTro5.chrX                    177480 25 + 155549662 cggaggctcacgcccctactccc--ag--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124292 25 +    417917 cggaggctcacacccctactccc--ag--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112424 23 + 149150640 cggaggctcacgcccctaatccc------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698809 23 - 171882078 cggaggctcacgcccctaatccc------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166834 23 +  25972781 cggaggctcaggcccctaatccc------
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        104857 25 -    811265 cggaggctcacgcccccaatcccag----
i chlSab2.chrUn_KE147541v1     C 0 I 14
s manLeu1.NW_012108508v1           24507 23 -    350446 cggaggctcacgccccccatccc------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186524 23 +   1230721 cggaggctcacgcccccaatccc------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42634 25 +   2853901 tggaggctcacgcccctaatgcc----ag
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137751 25 +    465904 tggaggctgacgcccctaatccc----ag
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209334 25 -    735872 tggaggctcacgcccttaatccc----ag
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                101291  0 +  11138919 C
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=47848.000000
s hg38.chrX_KI270880v1_alt         56063 24 +    284869 cactttggaaggcccaggtgggcg-
s panTro5.chrX                    177505 24 + 155549662 cactttggaaggcccaggtgggcg-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124317 24 +    417917 cactttggaaggcccaggtgggcg-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112447 15 + 149150640 ---------agatccaggtgggtg-
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171698832 15 - 171882078 ---------agatccaggtgggtg-
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          166857 15 +  25972781 ---------agatccaggtgggtg-
i macNem1.NW_012017243v1       C 0 I 1
s manLeu1.NW_012108508v1           24530 15 -    350446 ---------agatccaggtgggtg-
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          186547 15 +   1230721 ---------agatccaggtgggtg-
i colAng1.NW_012115411v1       C 0 I 1
s calJac3.chrY                     42659 25 +   2853901 cactgtgggaggccgtggcgggcgg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137776 25 +    465904 cactttgggaggccgaggcgggcag
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209359 25 -    735872 tactttgggaggccgaggcaggcgg
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                101291  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        104882 14 -    811265 I
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=312719.000000
s hg38.chrX_KI270880v1_alt         56087 58 +    284869 atcacctgaggt-caggagttcaagaccagcctggccaacatggtgaaaccccgtccct
s panTro5.chrX                    177529 58 + 155549662 atcacctgaggt-caggagttcaagaccagcctggccaacatggtgaaaccccgtccct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124341 58 +    417917 atcacctgaggt-caggagttcaacaccagcctggccaacatggtgaaaccccgtccct
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112463 58 + 149150640 atcacctgaggt-caagagttcaagaccagcctggccaacatggtgaaaccccgtctct
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171698848 58 - 171882078 atcacctgaggt-caagagttcaagactagcctggccaacatggtgaaagcccgtctct
i macFas5.chr7                 I 1 C 0
s macNem1.NW_012017243v1          166873 58 +  25972781 atcacctgaggt-caagagttcaagactagcctggccaacgtggtgaaaccccgtctct
i macNem1.NW_012017243v1       I 1 C 0
s chlSab2.chrUn_KE147541v1        104896 58 -    811265 atcacctgaggt-caagagttcaagaccagcctggccaacatggtgaaaccccgtctct
i chlSab2.chrUn_KE147541v1     I 14 C 0
s manLeu1.NW_012108508v1           24546 58 -    350446 atcacctgaggt-caagagttcaagactagcctggccaacatggtgaaaccccgtctct
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          186563 58 +   1230721 atcacctgaggt-caagagttcaagactggcctggccaacagggtgaacccccgtctct
i colAng1.NW_012115411v1       I 1 C 0
s calJac3.chrY                     42684 59 +   2853901 atcactggaggtccaggagttcaagaccagcctggacaacatggtgaaaccccgtttct
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137801 58 +    465904 ctcacctgaggt-taggagttccagaccagcctggccaacatggtgaaaccctgtgtct
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209384 58 -    735872 atcaccggaggt-taggaattcgagaccagcctggccaacatggtgaaaccccatttct
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                101291  0 +  11138919 C
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=594362.000000
s hg38.chrX_KI270880v1_alt         56145 112 +    284869 actaaaaatgcaaaaattagcc------------------------------ctactcgggaggctgaagcaggaaaatcacttgaacccaggaggtggaggttgcagtgagccgagatagcgccgctgcactccagcctgg
s panTro5.chrX                    177587 142 + 155549662 actaaaaatgcaaaaatgagctgggcgtcgtgctgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggatgcagtgagccgagatagcgccgctgcactccagcctgg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124399 141 +    417917 act-aaaatgcaaaaattagccaggtgtggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgagatagcgccgctgcactccagcctgg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112521 142 + 149150640 accacaaacgcaaaaactagctgggcctggtggcaggtgcctgtcatcccagctattcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccgagatggcgccgctgcactccagcctgg
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171698906 142 - 171882078 accagaaacgcaaaaactagctgggcctggtggcaggtgcctgtcatcccagctattctggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccgagatggcgccgctgcactcccgcctgg
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          166931 142 +  25972781 accagaaacgcaaacagtagctgggcctggtggcaggtgcctgtcatcccagctattccggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagggagccgagatggcgccgctgcactccagcctgg
i macNem1.NW_012017243v1       C 0 I 1707
s chlSab2.chrUn_KE147541v1        104954 142 -    811265 accagaaacgcaaaaactagctgggcctggtggcaggtgcctgtcatgccagctactcgggaggctgaggcaggagaatcactcgaacccgggaggcggaggttgcagtgagcggagatggcgcccctgcactccagcctgg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24604 142 -    350446 accagaaacgcaaaaactagctgggcctggtggcaggtgcctgtcatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcggtgagccgagatggcgccgccgcactccagcctgg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186621 142 +   1230721 accagaaacgcaaaaattagctgggcctgctggcgcaggcctgtcctcccggctattccggaggctgaggcaggagaatcactcgaacccaggaggcggaggctgctctgagccgagatagcgccgctgcactccagcgtga
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42743 141 +   2853901 cctaaaaatacaaaaagtagccggccgtggtggcgggcgcctgtaatcccagccactcaggaggctgagg-acgagactcactggaacccgggaggcggaggctgcagagaggcgagatggcgccactgcactgcagcctgg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137859 139 +    465904 actaaaaatac-aaaattagccgagcatggtggcaaatgcctgtcatcccagctactcaggaggctgagg-accagagtcacttgaa-ccgggaggcggaggttgcagagaggggagatcgtgccactgcactccagcctgg
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209442 142 -    735872 actaaaaatacaaaaactagccgggcgtggtggcgggcacctgtcatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggagacggaagttgcagaaaggcaagatctcatcactgcactccagcctgg
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                101291  23 +  11138919 --------------------------------------------------------------------------------ATTAAAAACCACGAAGTGATGGT---------------------------------------
i otoGar3.GL873584             C 0 C 0
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=16539.000000
s hg38.chrX_KI270880v1_alt         56257 9 +    284869 gaaacagag
s panTro5.chrX                    177729 9 + 155549662 gaaacagag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124540 9 +    417917 gcaacagag
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112663 9 + 149150640 gcgacagag
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699048 9 - 171882078 gcgacagag
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1        105096 7 -    811265 gcaac--ag
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24746 9 -    350446 gcaacagag
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186763 5 +   1230721 gcaac----
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42884 9 +   2853901 gaggcagcg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                137998 9 +    465904 gcgacggtg
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209584 9 -    735872 gtgacagag
i cebCap1.NW_016107987v1       C 0 I 43
s otoGar3.GL873584                101314 7 +  11138919 --ACCAAAA
i otoGar3.GL873584             C 0 C 0
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=39535.000000
s hg38.chrX_KI270880v1_alt         56266 41 +    284869 aggcttcgtctcaa-ataa---------------ataaatataaat------aaataaaTTTC
s panTro5.chrX                    177738 47 + 155549662 aggcttcgtctcaa-ataaataaat---------ataaatataaat------aaataaATTTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124549 43 +    417917 aggcttcgtctcaa-ataa----at---------ataaatataaat------aaataaaTTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112672 55 + 149150640 agacaacgtgtcaacataaataaata--------ataaataaaagtaaaaATAAATAAATTTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699057 55 - 171882078 agacaacgtgtcaacataaacaaata--------ataaataaaagtaaaaATAAATAAATTTC
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1        105103 51 -    811265 agacagcgtctcaacacaaataaata--------ataaataaaactaa----aaACAAATTTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           24755 51 -    350446 agacaacgtctcaacataaataaata--------ataaataaaaataa----aaATAAATTTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          186768 51 +   1230721 agacagcgtctcaatataaataaata--------atacataaaactaa----aaACAAATTCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     42893 37 +   2853901 agactctgtgtcaa-agaataaaata--------aaatacaaaaaC-----------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                138007 45 +    465904 agactctgtctcaa-aagataaaataaattaaagaaaaaaaaaaaG-----------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                101321 17 +  11138919 ----AGCCTTTTAG-ACATGGA-----------------------------------------
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          209593 43 -    735872 I
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=251510.000000
s hg38.chrX_KI270880v1_alt         56307 76 +    284869 AAAGCCACTGAGTTACTGAATAAAACCACGCTGCATAAATAGTCCGGTATGTGAGTGATATCTCAACCGACTCTTA
s panTro5.chrX                    177785 76 + 155549662 AAAGCCACTGAGTTACTGAATAAAACCGCGCTGCATAAATAGTCCGGTACGTGAGTGATATCTCAACCGACTCTTA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124592 76 +    417917 AAAGCCACTGAGTTACTGAATAAAACCGCGCTGCATAAATAGTCCGGTATGTGAGTGGTATCTCAACCGACTCTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112727 76 + 149150640 AAAGCCAGCAAGTGACTGACTGAAACCACGCTGCATAAATAGCACGGTATGTGAGCGATATCTCAACCGACTCTTT
i rheMac8.chrX                 C 0 I 6
s macFas5.chr7                 171699112 76 - 171882078 AAAGCCAGCAAGTGACTGACTGAAACCACGCAGCATAAATAGCACGGTATGTGAGCGATATCTCGACCGACTCTTT
i macFas5.chr7                 C 0 I 6
s chlSab2.chrUn_KE147541v1        105154 76 -    811265 AAAGCCGGCAAGTGACTGAATAAACCCACGCTGCATAAATAGCACGGAATGTGAGCGATATCTCAACCCACTCTTT
i chlSab2.chrUn_KE147541v1     C 0 I 6
s manLeu1.NW_012108508v1           24806 76 -    350446 AAAGCCAGCAAGTGACTGACTGAAACCACGCTGCATAAATAGTACGGTATGTGAGCGATATCTCAAGCGACTCTTT
i manLeu1.NW_012108508v1       C 0 I 6
s colAng1.NW_012115411v1          186819 76 +   1230721 AAAGCCCGCGAGTGACTGAATAAAAACACGCAGCATAAATAGTACGGTATGTGAGTGATATCTCAACCGACTCTTT
i colAng1.NW_012115411v1       C 0 I 6
s calJac3.chrY                     42930 76 +   2853901 GAGGCCAGTGAGTTACGGAACGAAACCACACTGGGCAACCGGCATGGTACGTGAGTGATATCTCAACAGACTCTTA
i calJac3.chrY                 C 0 I 8
s saiBol1.JH378345                138052 76 +    465904 GAAGCCAGTGAGTTACTGAATGAAACCACACTGGGCAAACGGCGTGGTATGTCAGTGATAGCTCAACAGACTCTTA
i saiBol1.JH378345             C 0 I 8
s cebCap1.NW_016107987v1          209636 76 -    735872 aaaGCCAGTGAGTTACTGAATGAAACCACACTGGGCAAACTACACGGTATATCGGTGACATCTCAACAGACTCTCA
i cebCap1.NW_016107987v1       I 43 I 8
s otoGar3.GL873584                101338  5 +  11138919 --------------ACTGA---------------------------------------------------------
i otoGar3.GL873584             C 0 C 0
e cerAty1.NW_012001098v1          120530 207 -   1025902 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=551326.000000
s hg38.chrX_KI270880v1_alt         56383 134 +    284869 AGTTAGCCAGTGGGAAGGAATGCTGGGTATTGCAATAACGCCGGGAAAGTTTCACCCACCCGACGCCTTTACGAAGGGTGAAGGAGTTTCCCGATGTTTATTACCAGCAATGCAAGGTA-TATTTAAATTAAAAA
s panTro5.chrX                    177861 134 + 155549662 AGTTAGCCAGTGGGAAGGAATGCTGGGTATTGCAATAACACCGGGAAAGTTTCACCCACCCGACGCCTTTACGAAGGGTGAAGGAGTTTCCCGATGTTTATTACCAGCAATGCAAGGTA-TATTTAAATTAAAAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124668 133 +    417917 AGTTAGCCAGT-GGAAGGAATGCTGGGTATTGCAATAACGCCGGGAAAGTTTCACCCACCCGACGCCTTTACGAAGGGTGAAGGAGTTTCCCGATGTTTATTACCAGCAACGCGAGGTA-TATTTAAATTAAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112809 135 + 149150640 AGTTAGCCAGTGGGAAGGAACGCGGGGCATTGCAGTCACGCCGGGGAAGGTTCACCCGCCCGACGCCTTGACAAACGGTGAAGGAGTTTCCCGGGGTTTGTTACCAGCGGCGCAAGGTGTTATTTAAATTAAAAA
i rheMac8.chrX                 I 6 C 0
s macFas5.chr7                 171699194 135 - 171882078 AGTTAGCCAGTGGGAAGGAACGCGGGGCATTGCAGTCACGCCGGGGAAGGTGCACCCGCCCGACGCCTTGACAAAGGGTGAAGGAGTTTCCCGGGGTTTGTTACCAGCGGTGCAAGGTGTTATTTAAATTAAAAA
i macFas5.chr7                 I 6 C 0
s cerAty1.NW_012001098v1          120737 135 -   1025902 AGTTAGCCAGTGGGAAGGAATGCGGGGTATTGCAGTAACGCCGGGGAAGTTTCACCCGCCCGACGCCTTGACAAAGGGTGAAGGAGTTTCCCGGGGTTTGTTACCAGCGGTGCAAGGTGTTATTTAAATTAAAAA
i cerAty1.NW_012001098v1       I 207 C 0
s chlSab2.chrUn_KE147541v1        105236 135 -    811265 AGTTAGCCAGTGGGAAGGAATGCGGCGTATCACAGTAACGCCGGGGAGGTTTCACCCGCCGGACGCCTTGACAAAGGGTGAAGGAGTGTCCCGGGGTTTGTTACCAGCGGTGCAAGGTGTTATTTACATTAAAAA
i chlSab2.chrUn_KE147541v1     I 6 C 0
s manLeu1.NW_012108508v1           24888 134 -    350446 AGTTAGCCAGTGGGAAGGAATGCGGGGTATTGCAGTAACGCCGGGGAAGTTTCACCCGCCGGACGCCTTGACAAAGGGTGAAGGAGTTTCCCGGGGTTTGTTACCAGCCGTGCAAGGTGTTACTTAAATT-AAAA
i manLeu1.NW_012108508v1       I 6 C 0
s colAng1.NW_012115411v1          186901 135 +   1230721 AGCTAGCCAGTGGGAAGGAATGCTGGGTATTGCAATAACGCCGGGGAAGTTTCACCCGCCCGCCGCCTTGACAAAGGGTGAAGGAGTTTCCGGGGGTTTATGACCAGCAGTGCAAGGTGTTATTTAAATTAAAAA
i colAng1.NW_012115411v1       I 6 I 1136
s calJac3.chrY                     43014 132 +   2853901 AGGAAG-CCGGGGGAAGAAACGCTGCGTCTTGGAACAAGGACCGGAAAGTTT--CCTACCCAACGCCTTTTCCAAGGGTGAAGGAATTTCCCCGCGTCTATTACCAGCAATCCAGGGTATTATTTAAATGAAAAA
i calJac3.chrY                 I 8 C 0
s saiBol1.JH378345                138136 131 +    465904 AGGCAGCCCGTGGGAAGAAATG-TGTGAATCGGAACAAGTACGGGAAACTCT--CCCACCCAAGGCCTTTTCCAAGGGTGAAGGAATTTCCCCGCACTTATTACCATCAATCC-GGGTAGGACTTAAATGAAACA
i saiBol1.JH378345             I 8 C 0
s cebCap1.NW_016107987v1          209720 130 -    735872 AGGCAGCCCGTGGGAAGACATGCTGTGTATGGCAACAAGTCCGGGAAAGTTT--CCCACCCAACGCCTTTTCCAAGCGTGAGGGAATTTCCCCGCACTTATTACCAGCAATCCAGGGT---ATTTAAATGAAAAA
i cebCap1.NW_016107987v1       I 8 C 0
s otoGar3.GL873584                101343 108 +  11138919 ------CCAGGAAGAAGG-----------CTCCAGCAAGGCCTAG-AAGTTACACT-----GAAGCAGTCGCAAACAG-GGAGCAGCTCCCCTGG---TGTCACTAACAATTCAAGCTGCTATTTAAATTTAAAA
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=811783.000000
s hg38.chrX_KI270880v1_alt         56517 237 +    284869 TCTGTCTGCAGCGAACACTC-------CCAGGCGCTGACGGCTCTCA-CCCG------------CCTTGGTTGATCACAGCAAGGCG-CGCACTCACAGCCAAAACTCCCGGGAAAGGAGCG---AGTGCTCTTT-----TCAAAGCCCGGTTTTCCTAACAAGCTTGGCACCGCTTCCCACAGAGCAGCACCCGGTTTTCGGCGGCGT--GCGGCCCGAGCGGGT-CCC---CTGCGCCCACAACTGGCCCTG--TAAATCTGGCGTTTGGGC
s panTro5.chrX                    177995 235 + 155549662 TCTGTCTGCAGCGAACACTC-------CCAGGCGCTGACGG--CTCA-CCCC------------CCTTGGTTGATCACAGCAAGGCG-CGCACTCACAGCCAAAACTCCCGGGAAAGGAGCG---AGTGCTCTTT-----TCAAAGCCTGGTTTTCCTAACAAGCTTGGCACCGCTTCCCACAGAGCAGCACCCGGTTTTCGGCGGCGT--GCGGCCCGAGCGGGT-CCC---CTGTGCCCACAACTGGCCCTG--AAAATCTGGCGTTTGGGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          124801 237 +    417917 TCTGTCTGCAGCGAACACTC-------CCAGGCGCTGACGGCTCTCA-CCCC------------CCTTGGTTGATCACAGCAAGGCA-CGCACTCACAGCCAAAACTCCCAGGAAAGGAGCG---AGTGCTCTTT-----TCAAAGCCCGGTTTTCCTAACAAGCTTGGCACCGCTTCCCACAGAGCAGCACCCGGTTTTCGGCGGCGT--GCGGCCCGAGCGGGT-CCC---CTGCGCCCACAACTGGCCCTG--AAAATCCGGCGTTTGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    112944 252 + 149150640 TCTGCCTGCAGCGATGCCTC-------CCAGGCACTGACGGTTCTCA-CCCCCGCCCCCCCCTGCCTTGGTGGATCCCAGCGAGGCG-CGCACTCACAGCCAAAACTCCCGGGAAAGAAGCG---GGGGCTCTTT-----CCAAAACCCGGGTTTGCTAACAAGCTTGGCACAGCTTCCCAACCAGCAGCACCCGGTTTTCGGCGGCGTGTGCGGCCCGAGCGGGTCCCC---CCGCGCCCGCGACTGGTGCTG--AAAATCTGGGGTTCGGGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699329 251 - 171882078 TCTGCCTGCAGCGATGCCTC-------CCAGGCACTGACGGTTCTCA-CCCCCCCACCCCCCTGCCTTGGTGGATCCCAGCGAGGCG-CGCACTCACAGCCAAAACTCCCGGGAAAGAAGCG---GGGGCTCTTT-----CCAAAACCCGGGTTTGCTAACAAGCTTGGCACAGCTTCCCAACGAGCAGCACCCGGTTTTCGGCGGCGTGTGCGGCCCGAGCGGGT-CCC---CCGCGCCCGCGACTGGTGCTG--AAAATCTGGGGTTCGGGC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          120872 242 -   1025902 TCTGCCTGCAGCGAGCCCTC-------CCAGGCACTGCCGGTTCTCA-CCCCCGCACCCCGCTGCCTTGGTGGATCCCAGCGAGGCG-CGCACTCACAGCCAAAACTCCCGGCAAAGCAGCG---GGGGCTCTTT-----CCAAAGCCCGGGTTTGCTAACAAGCCTGGCACAGCTTCCCAAGGAGCAGCACCCGGTTTGTG---------GCGGCCCGAGCGGGT-CCC---CCGCGCCCGCAACGGGTGCTG--AAAATCTGGCGTTCGGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105371 242 -    811265 TCTGCCTGCAGCGAACCCTC-------CCAGGCACTGACGGTTCTCA--CCCCCCACCCCCCTGCCTTGGTGGATCCCAGCGAGGCG-CGCACTCACAGCCAGAACTCCCGGGAAAGAAGCG---GGGGCTCTTT-----CCAAAGCCCGGGTTTGCTAACAAGCTTGGCACCGCTTCCCAAGGAGCAGCACCCGGTTTTCGGCGGCGT--GCGGCCCGAGCGGGT-CCC---CCGCGCCCGCAA------CTG--AAAATCTGGCGTTCGGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           25022 240 -    350446 TCTGCCTGCAGCGAGCCCTC-------CCAGGCACTGCCGGTTCTCACCCCCCCCACCCCCCCGCCTTGGTGGATCCCAGCGAGGCG-CGCACTCACGGCCAAAACTCCCGGGAAAGAAGCG---GGCGCTCTTT--------GAGCCCGGGTTTGCTAACAAGCCTGGCACAGCTTCCCAAGGAGCAGCACCCGGTTTTCG---------GCGGCCCGAGCGGGT-CCC---CCGCGCCCGCAACGGGTGCTG--AAAATCTGGCGTTCGGGC
i manLeu1.NW_012108508v1       C 0 M 990
s calJac3.chrY                     43146 221 +   2853901 TCTGCGTGCAGCGAAC---C-------GGAGGCACTGCCGGTCCTCA-CACA------------GCCCGGCTTATCTCAGCAGGGTGCCACACTCAGGGCTG-AAGTCCCCGGCAAGCAGCG---------------------AAGCCGGCTTTTCCTGCCTCGGTTGGCACAGCTTCCCAAACAGCAGCACCCTGTTTTCGGCGGCGC--GTGGCCCGGGTGGAT-CCC---CTGCGCCCACAACTAGCCCTG--AAAACGTTGCGTTGGGGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                138267 233 +    465904 TCCGTGTGCAGCGAAC---C-------CGAGGCACTGCCGGCTCTCA-CCCC-------------CTTGGCTCATCTCAGCAGGGTGCCACACTCACAGCTA-AACTCCCGGGAAAGCCGCG---GGTGCTCTTC-----TCCAAGTCGGCTTTTCCTACCCAGCTTGGCACAGCTTCCCAAAGAGCACCACCCGGTTTTCCGCGGCGC--GTGGCCCGGGCGGGT-CCC---TTGCGCCCACCACTGGCCCTG--AAAATCTTGCGTTCGGGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          209850 234 -    735872 TCCGTGTGCAGCGAAC---C-------CGAGGCGCGGCCGGTTCTCA-CCCC------------GCTTGGCTCATCTCAGCAGGGTGCCACACTCACAGCTA-AACTCCCGGGAAAGCAGCT---GGTGCTCTTT-----TCCAAGCCGGCTTTTCCTACCTAGCTTGGCACAGCTTCCCAAAGAGCAGAACCGGGTTTTCTGCGGCGC--GTGGCCCGGGCGGGT-CCC---CTGCGCCCACAACTGGCCCTG--AAAATCTTGCGTTCGGGC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                101451 229 +  11138919 --TATCTACAGATAATCCCCACTTAAATCAAGCCTTAAAAGTTTTCA------------------CATGGAGGGT--GAGCAGGGTA---------GAGGAAAAGCTACAGGAAAAGGAGGGGCCGGCACTCTTTGTAATGTAAAGAACTATTTTTCTA-CAAGTT-----CCACGTTTCAAATAGAAACACCTGCTTTTCCGCA------GCAGCTCT-GTGGGC-CTCTAACCGCACACTCAGTTAATCCTGCAAAAAACACCCGACTGCGC
i otoGar3.GL873584             C 0 C 0
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=27138.000000
s hg38.chrX_KI270880v1_alt         56754 6 +    284869 CCCGCC
s panTro5.chrX                    178230 6 + 155549662 CCCGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125038 6 +    417917 CCCGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113196 6 + 149150640 CCCGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699580 6 - 171882078 CCCGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121114 6 -   1025902 CCCGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105613 6 -    811265 CCCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     43367 6 +   2853901 CCTGCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                138500 6 +    465904 CCTGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          210084 6 -    735872 CCTGCC
i cebCap1.NW_016107987v1       C 0 I 477
s otoGar3.GL873584                101680 6 +  11138919 CATGCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=76501.000000
s hg38.chrX_KI270880v1_alt         56760 40 +    284869 --ACGCAACAACGGGT----------GCACGGCCAGCA---GCGGCGAGCGGGGG-
s panTro5.chrX                    178236 40 + 155549662 --ACGCAACAACGGGT----------GCACGGCCAGCA---GCGGCGAGCGGGGG-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125044 40 +    417917 --ACGCAACAACGGGT----------GCACGGCCAGCA---GCGGCGAGCGGGGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113202 39 + 149150640 --ACGCGACAGCGGGT----------GCACGGCCAGCA---GCGGCGAG-GGGGG-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699586 39 - 171882078 --ACGCGACAGCGGGT----------GCACGGCCAGCA---GCGGCGAG-GGGGG-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121120 39 -   1025902 --ACGCGGCAGCGGGT----------GCACGGCCAGCA---GCGGCGAG-GGGGG-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105619 39 -    811265 --ACGCGACAGCGGGT----------GCACGGCCAGCA---GCGGCGAG-GGGAG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     43373 33 +   2853901 ---GGGGACACCGGGT---------------GCCAGGA---GCGGCGGG-GTGGG-
i calJac3.chrY                 C 0 I 363
s saiBol1.JH378345                138506 36 +    465904 ---GGGGACACCGGGT---------------GCCAGGAGTGGCGGTGGG-GTTGG-
i saiBol1.JH378345             C 0 I 8
s otoGar3.GL873584                101686 52 +  11138919 ACACGGGACACGGGGTTGTCACACACGCACAGACAGGA---GCTGCTGC-TAGAGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210090 477 -    735872 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=11949.000000
s hg38.chrX_KI270880v1_alt         56800 20 +    284869 CCCACGCGGGGCCGGGAGGG
s panTro5.chrX                    178276 20 + 155549662 CCCACGCGGGGCCGGGAGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125084 20 +    417917 CCCACGCGGGGCCGGGAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113241  8 + 149150640 CCCGCGCG------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699625  8 - 171882078 CCCGCGCG------------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121159  8 -   1025902 CCCGCGCG------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105658  8 -    811265 CCCGCGCG------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     43769 20 +   2853901 CCCGCGTGGGGCCTGGAGGG
i calJac3.chrY                 I 363 C 0
s saiBol1.JH378345                138550 19 +    465904 CCCGCGT-GGGCCAGGAGGG
i saiBol1.JH378345             I 8 I 748
s otoGar3.GL873584                101738 13 +  11138919 AACACGCAGGACG-------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210090 477 -    735872 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=51596.000000
s hg38.chrX_KI270880v1_alt         56820 42 +    284869 CAGGGCTCGCCGGGCCGGGAG---GCCTCGCCCGGTGT-CGGGCAG----
s panTro5.chrX                    178296 42 + 155549662 CAGGGCTCGCCGGGCCGGGAG---GCCTCGCCCGGTGT-CGGGCAG----
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125104 42 +    417917 CAGGGCTCGCCGGGCCGGGAG---GCCTCGCCCGGTGT-CGGGCAG----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113249 31 + 149150640 -----------GGGCCGGGAG---GCCTCGCCCGGGTT-GGGCAGG----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699633 31 - 171882078 -----------GGGCCGGGAG---GCCTCGCCCGGTGT-GGGGCAG----
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121167 31 -   1025902 -----------GGGCCGGGAG---GCCTCGGCCGGTGT-GGGGCAG----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105666 32 -    811265 -----------GGGCCCGGAG---GCCTCGCCCGGTGTGGGGGCAG----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     43789 42 +   2853901 CACAGCTTGCCGGACCAGGAG---GCTCGGCCGGATTT-ggggccg----
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                101751 49 +  11138919 CGGAGACCACCAGCCCTGAATCCCGTCTCACAGGCAGA-GAGATAGGCAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210090 477 -    735872 I
e saiBol1.JH378345                138569 748 +    465904 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=726080.000000
s hg38.chrX_KI270880v1_alt         56862 207 +    284869 -------------CCGCGGGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGAGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-TGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGTCGCATGCCGCCGGCGCGCAGGGCTCTCCG-----cgggccgggccgggcgccgcgctctcggggcaggg
s panTro5.chrX                    178338 212 + 155549662 -------------CCGCGGGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGAGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCACAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGTCGCATGCCGTCGGCGCGCAGGGCTCTCCGcgggccgggccgggccgggcgccgcgttctcggggcaggg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125146 205 +    417917 -------------CCGC-GGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGAGA-GGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGTCGCATGCCGTCGGCGCGCAGGGCTCTCCG-----CGGGCCGGGCCAGGCGCCGCGCTCTCGGGGCAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113280 211 + 149150640 -------------CCGCGGGCGCGGCGGG-------GCTGACCCTGCTGGAA-GCCTTCAGGCCCCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCCGGCGGGCCAGCCGAGGCCCAGCTCCTGGGCGAGGTCGGGGGTCCTGGCGC-GCGA-CGCTC-CGGAGCCGCATGCCGTCGGCGCGCAGGGCTCTCCG-----CGGGCCGGGCCGGGCGCTGCGGTCTCGGGCGAGGG
i rheMac8.chrX                 C 0 I 2
s macFas5.chr7                 171699664 207 - 171882078 -------------CCGCGGGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGCCGCATGCCGTCGGCGCGCAGGGCTCTCCG-----CGGGCCGGGCCGGGCGCTGCGCTCTCGGGGCAGGG
i macFas5.chr7                 C 0 M 100
s cerAty1.NW_012001098v1          121198 207 -   1025902 -------------CCGCGGGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGCCGCATGCCGTCGGCGCGCAGGGCTCTCCG-----Cgggccgggccgggcgctgcgctctcggggcaggg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105698 207 -    811265 -------------CCGCGGGGCGCGCGGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGCCGCATGCCGTCGGCGCGCAGGGCTCTCCG-----cgggccgggccgggcgctgcgctctcggggcaggg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     43831 207 +   2853901 -------------gggcggggcccgcggg-------gcTGA-CCTGCTGAAAGGCCTTCAG---CCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAGCGCTCGCGGAGCCTCATGCCGTCGGCGCGGGGGGCTCTCCA-----cgggccgggccgggcgccacgctctcggggcaggg
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          210567 207 -    735872 -------------CCGCGGAGCGCGCAGG-------GCTGA-CCTGCTGGAAGGCCTTCAG---CCGCTTCTTGAACCGCGAGGGCAGCACGAAGTCGCAGCC-GCGGGCCAG-CGAGG-CCAGCTCCTGGCGCAGGTC-GGGGTCCTGGCGCAGCGAACGCTCGCGGAGCCTCATGCCGTCGGCGCGTGGGGCTCTCCG-----cgggccgggccgggctccgcgctctcggagcaggg
i cebCap1.NW_016107987v1       I 477 C 0
s otoGar3.GL873584                101800 227 +  11138919 CCCCTACAGCCCACCCTGACGCCACCAGGCTACCCCACCGA-CCTGCTGGAAGGCCTTCAG---CCTCTTCTTGAAGCGGGACGGCAGCACAAAGTCGCAGCC-CCGGGCCAG-AGAGG-CCAGCTCCTGCCGGAGGTC-AGGGTCCTGGCGCAGGGACAGCTCCCGAAGCCTCATGCCCTCGGCTCGCACAGGCCTGCG-----GGGGCCAGGCCAGGCACTGCGCTCTCGGGCCAGGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e saiBol1.JH378345                138569 748 +    465904 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=55606.000000
s hg38.chrX_KI270880v1_alt         57069 23 +    284869 ccgggccggggccggc--------------ggggcgc
s panTro5.chrX                    178550 23 + 155549662 ctgggccggggccggc--------------ggggcgc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125351 23 +    417917 CCGGGCCGGGTCCGGC--------------GGGGCGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113493 17 + 149150640 CCGGGCCGCG--------------------GGGGCGC
i rheMac8.chrX                 I 2 C 0
s cerAty1.NW_012001098v1          121405 37 -   1025902 ccgggccggggccggcggggcgctgcaggcggggcgc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105905 23 -    811265 ccgggccgggaccggt--------------ggggcgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     44038 23 +   2853901 ccgggccggggccagc--------------ggggcgc
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          210774 23 -    735872 ccgggccggggccagc--------------ggggcgc
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102027 23 +  11138919 CCGGGCCAAGACCAGC--------------AGGGCGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e saiBol1.JH378345                138569 748 +    465904 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e macFas5.chr7                 171699871 100 - 171882078 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=459712.000000
s hg38.chrX_KI270880v1_alt         57092 140 +    284869 tgcaggcgtggcCCGGGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCAG-GCTGAGGAGGG-CGCATGGCGCCGGG-------GGTGGGGGCGGCCGCCTCTC-CCGACCCGC
s panTro5.chrX                    178573 140 + 155549662 tgcaggcgtggcCCGGGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCAG-GCTGAGGAGGG-CGCATGGCGCCGGG-------GGTGGGGGCGGCCGCCTCTC-CCGACCCGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125374 140 +    417917 TGCAGGCGTGGCCCGGGCTCAGCGCGCTCCATGCG-TCGTCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCAG-GCTGAGGAGGG-CGCATGGCGCCGGG-------GGTGGGGGCGGCCGCCTCTC-CCGACCCGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113510 135 + 149150640 TGCAGGCCGG--CCCGGTTCAGC-CGCTCCATGCGTTCGCCCGCCAGGCGCTCTGGGGC---GGCCCGCGCCGCGCGCATTCCTCTGAGCTGAGGAGGGCCTCATGGCG-CGGG-------GGTGGCGGC-GCGGCCCCTCACCGACCCG-
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171699971 140 - 171882078 TGCAGGCGGGGCCCGGGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCTG-GCTGAGGAGGG-CTCATGGCGCCGGG-------GGTGGCGGCGGCCGCCCCTC-CCGACCCGC
i macFas5.chr7                 M 100 C 0
s cerAty1.NW_012001098v1          121442 140 -   1025902 tgcaggcggggcCCGGGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCAG-GCTGAGGAGGG-CTCATGGCGCCGGG-------GGTGGCGGCGGCCGCCCCTC-CCGACCCGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        105928 140 -    811265 tgcaggcggggcccgggcTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTGGGGCCGGGGCCCGCGCCGCGCGCATTCCTCAG-GCTGAGGAGGG-CTCATGGCGCCTGC-------GGTGGCGGCGGCCGCCCCTC-CCGACCCGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     44061 140 +   2853901 tgcaggcggggccgggGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTCTgggccccgggcccccgccgcgcACATTCCTCAG-GCCGCGGAAGG-CGCATGGCGCCGGG-------GGTGTGGGCAGCCGCCCCTC-CCGACCCGA
i calJac3.chrY                 C 0 C 0
s cebCap1.NW_016107987v1          210797 140 -    735872 tgcaggcggggccgggGCTCAGCGCGCTCCATGCG-TCGCCCGCCAGGCGCTGTGGGGCCCGGGCCCGCGCCGCGCGCATTCCTCAG-GCCGCGGAGGG-CGCATGGCGCCGGG-------GGTGGGGGCGGCCGCCCCTC-CCGACCCGA
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102050 148 +  11138919 TCCAGGCAGTGGCCGGGCTCAGCACGCTCCATGCG-TCCCCAGCCAGGAGCTGTGGGGACCGACCCTGGGACACACGCATTCCACAG-GCTGAGGAGAA-CGCATGGTGGAGGGGCGGGGAGGCAGGCGCAGCCGCCCCTCCCCGACCCAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e saiBol1.JH378345                138569 748 +    465904 I
e colAng1.NW_012115411v1          187036 1136 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=70572.000000
s hg38.chrX_KI270880v1_alt         57232 21 +    284869 GACTGTGCAGACCCGGCTGCT
s panTro5.chrX                    178713 21 + 155549662 GACTGTGCAGACCCGGCTGCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125514 21 +    417917 GACTGTGCAGACCCGGCTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113645 19 + 149150640 --CTCTGGAGCCCGGCGCGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700111 21 - 171882078 GACTGTGCAGACCCGGCCGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121582 21 -   1025902 GACTGTGCACACCCGGCCGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106068 21 -    811265 GACTGTGCAGACCCGGCCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188172 21 +   1230721 GACTGTGCAGACCCGGCCGCc
i colAng1.NW_012115411v1       I 1136 C 0
s calJac3.chrY                     44201 21 +   2853901 GACTATGCAGACCCGGCCGCT
i calJac3.chrY                 C 0 I 3
s cebCap1.NW_016107987v1          210937 21 -    735872 GACTGTGCAGACCCGGCCGCT
i cebCap1.NW_016107987v1       C 0 I 87
s otoGar3.GL873584                102198 18 +  11138919 AACTGTGCAGAGGGAGCC---
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e saiBol1.JH378345                138569 748 +    465904 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=107953.000000
s hg38.chrX_KI270880v1_alt         57253 45 +    284869 CCCGGCGctgctctcctctcctccttctccgctc--cctgcactgcc
s panTro5.chrX                    178734 44 + 155549662 CCCGGCGctgctctcctctcctccttct-cgctc--cccgcactgcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125535 45 +    417917 CCCGGCGctgctctcctctcctccttctccgctc--cccgcactgcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113664 44 + 149150640 CCCGGCGctgctctcctctcctccttct-cactc--cctgcactgcc
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700132 45 - 171882078 CCCGGCGctgctctcctctcctccttctccgctc--cctgcactgcc
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121603 45 -   1025902 CCCGGCGctgctctcttctcctccttctccgctc--cctgcactgcc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106089 45 -    811265 CCCGGCGctgctctcctcttctccttctccgctc--cctgcactgcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188193 45 +   1230721 ctcggcgctgctctcctctcctcctgctgcgctc--cctgcacggcc
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44225 31 +   2853901 CCCGG-------------TCCTCCGCCTCCGCTC--CCCACACGGG-
i calJac3.chrY                 I 3 C 0
s otoGar3.GL873584                102216 40 +  11138919 ACCGGC-CAGGCCTACCCCACTCAGTCAGTGCTCTGCCTGC------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210958 87 -    735872 I
e saiBol1.JH378345                138569 748 +    465904 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=15656.000000
s hg38.chrX_KI270880v1_alt         57298 4 +    284869 ctcc
s panTro5.chrX                    178778 4 + 155549662 ctcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125580 4 +    417917 ctct
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113708 4 + 149150640 ctcc
i rheMac8.chrX                 C 0 I 98
s macFas5.chr7                 171700177 4 - 171882078 ctcc
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121648 4 -   1025902 ctcc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106134 4 -    811265 ctcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188238 4 +   1230721 ctcc
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44256 4 +   2853901 CTCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139317 4 +    465904 CTCG
i saiBol1.JH378345             I 748 C 0
s otoGar3.GL873584                102256 4 +  11138919 CTCT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210958 87 -    735872 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=157779.000000
s hg38.chrX_KI270880v1_alt         57302 66 +    284869 gctccctccgg-----tcctcttctctcctctccCC----GTTCGCTCCGGGCTGGGCCGTCCGGCCGGGCAAGG-
s panTro5.chrX                    178782 60 + 155549662 gctccctccgg-----tcctcttctctcctctccCC----GTTC------GGCTGGGCCGTCCGGCCGGGCAAGG-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125584 66 +    417917 gctccctccgg-----tcctcttctctcctctcccc----gttcGCTCCGGGCTGGGCCGTCCGGCCGGGGAAGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020685 70 - 149150640 gctccccccggtcctctcctctcctctcctctccCC----GTTCGCTCCGGGCTGGGCCGTCCCGCAGGGC-AGG-
i rheMac8.chrX                 n 98 C 0
s macFas5.chr7                 171700181 70 - 171882078 gctccccccggtcctctcctctcctctcctctccCC----GTTCGCTCCGGGCTGGGCCGTCCCGCAGGGC-AGG-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121652 65 -   1025902 gctcccccccg-----tcctctcctctcctctccCC----GTTCGCTCCGGGCTGGGCCGTCCCGCAGGGC-AGG-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106138 64 -    811265 gctcccccgg------tcctctcctctcctctccCT----GTTCGCTCCGGGCTGGGCCGTCCCGCAGGGC-AGG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188242 63 +   1230721 gctccccgcgc-----tcctctcctgtcctctccCC----GTTCG--CCGGGCTGGGCCGTCCGGCAGGGC-AGG-
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44260 49 +   2853901 GCTCCCTCCGG-----TCCCCTCTGCTGCGCTC-----------------GGC---GCTGCCCGGCTGGGC-ACA-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139321 49 +    465904 GCTCCCTCCGG-----TCCCCTCTGCTCCGCTC-----------------GGC---GCCGCCCGGCTGGGC-ACA-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                102260 68 +  11138919 Gtcctctcttc-----tcttctcctttcccctcctctcTAGTTCTCGCTCAGCTGGGCCATCCAG--GGGC-AGGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e cebCap1.NW_016107987v1          210958 87 -    735872 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=146858.000000
s hg38.chrX_KI270880v1_alt         57368 39 +    284869 GGGCGCTTTCTGCACCGCGGCAGCCGTCACGTGGCTCGC
s panTro5.chrX                    178842 39 + 155549662 GGGCGCTTTCTGCACCGCGGCAGCCGTCACGTGGCTCGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125650 39 +    417917 GGGCGCTTTCTGCACCGCGGCAGCCGTCACGTGGCTCGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020755 30 - 149150640 GGGCGCTTTCTGC---------GCGGTCACGTGGCTCGC
i rheMac8.chrX                 C 0 I 116
s macFas5.chr7                 171700251 30 - 171882078 GGGCGCTTTCTGC---------GCGGTCACGTGGCTCGC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121717 30 -   1025902 GGGCGCTTTCTGC---------GCGGTCACGTGGCTCGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106202 30 -    811265 GGGCGCTTTCTGC---------ACCGTCACGTGGCTCGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188305 30 +   1230721 GGGCGCTTTCCGC---------ACCGTCACGTGGCTCGC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44309 39 +   2853901 GGGCGCGATCTGCACCGCGCGGGCCGTCACGTGGCTCGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139370 39 +    465904 GGGCGCTATCTGCACCGCGCGGGCCGTCACGTGGCTCGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211045 39 -    735872 GGGCGCTATCTGCACCGCGCGGGCCGTCACGTGGCTCGC
i cebCap1.NW_016107987v1       I 87 C 0
s otoGar3.GL873584                102328 38 +  11138919 GGCAGCTCTCTACACAGCGAC-CCCATCACGTGGCTCAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=8570.000000
s hg38.chrX_KI270880v1_alt         57407 3 +    284869 CCT
s panTro5.chrX                    178881 3 + 155549662 CCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125689 3 +    417917 CCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113810 3 + 149150640 CCT
i rheMac8.chrX                 I 98 C 0
s macFas5.chr7                 171700281 3 - 171882078 CCT
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121747 3 -   1025902 TCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106232 3 -    811265 CCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          188335 3 +   1230721 CCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44348 2 +   2853901 -CA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139409 2 +    465904 -CA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211084 2 -    735872 -CA
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102366 3 +  11138919 CCT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           25262 990 -    350446 M
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=121745.000000
s hg38.chrX_KI270880v1_alt         57410 20 +    284869 GGAGCGCGCATCAACAGGTC
s panTro5.chrX                    178884 20 + 155549662 GGAGCGCGCATCAACAGGTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125692 20 +    417917 AGAGCGCGCATCAACAGGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113813 20 + 149150640 GGAGCGCGCACCAACAGGTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700284 20 - 171882078 GGAGCGCGCACCAACAGGTC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121750 20 -   1025902 GGAGCGCGCACCAACAGGTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106235 20 -    811265 GGAGCGCGCACCAACAGGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26256 20 -    350446 GGAGCGCGCACCAACAGGTC
i manLeu1.NW_012108508v1       M 990 C 0
s colAng1.NW_012115411v1          188338 20 +   1230721 GGAGCGCGCATCAACAGGTT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44350 20 +   2853901 GGCGCGCGCATCAACAGGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139411 20 +    465904 GGCGCGCGCATCAACAGGTC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211086 20 -    735872 GGCGCGCGCATCAACAGGTC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102369 20 +  11138919 AGGACACACACAAACCAGTC
i otoGar3.GL873584             C 0 I 39
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=69532.000000
s hg38.chrX_KI270880v1_alt         57430 16 +    284869 CCCGA-GAGGAGAG--CCT
s panTro5.chrX                    178904 16 + 155549662 CCCGA-GAGGAGAG--CCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125712 16 +    417917 CCCGA-GAGGAAAG--CCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113833 19 + 149150640 TCCGATGAAGCGAGGCCCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700304 16 - 171882078 TCCGA-GAGGAGAG--CCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121770 16 -   1025902 CCCGA-GAGGAGAG--CCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106255 16 -    811265 CCCGG-GAGGAGAG--CCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26276 16 -    350446 CCCGA-GAGGAGAG--CCC
i manLeu1.NW_012108508v1       C 0 T 40
s colAng1.NW_012115411v1          188358 16 +   1230721 CCCGA-GAAGACAG--CCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44370 16 +   2853901 TCCGG-GAGGACAG--CCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139431 16 +    465904 TCCGA-GAGGAGAG--CCT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211106 16 -    735872 TCCGA-GAGGAGAG--CCT
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                102389 39 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=6600.000000
s hg38.chrX_KI270880v1_alt         57446 1 +    284869 G
s panTro5.chrX                    178920 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125728 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113852 1 + 149150640 G
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700320 1 - 171882078 G
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121786 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106271 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26252 1 -    350446 G
i manLeu1.NW_012108508v1       T 40 C 0
s colAng1.NW_012115411v1          188374 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 I 1
s calJac3.chrY                     44386 1 +   2853901 G
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139447 1 +    465904 G
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211122 1 -    735872 G
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                102389 39 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=43115.000000
s hg38.chrX_KI270880v1_alt         57447 32 +    284869 GGCGGAA-CGCGCATCAACAGGTCCCCGAGAGG
s panTro5.chrX                    178921 32 + 155549662 GGCGGAG-CGCGCCTCAACAAGTCCCCGAGAGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125729 32 +    417917 GGCGGAG-CGCGCATCAACAGGTCCCCGAGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    113853 33 + 149150640 GGCGGAGTCGCGCACCAACAGGTCTCCGAGAGG
i rheMac8.chrX                 C 0 I 157
s macFas5.chr7                 171700321 31 - 171882078 GGCGGAG-CGCGCACCAACAGGTCCCCGAGAG-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121787 29 -   1025902 TGCGGAG-CGCGCACCAACAGGTCCCCGAG---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106272 32 -    811265 GGGGGAG-CGCGCACCAACAGGTCCCCGGGAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26253 32 -    350446 GGCGGAG-CGCGCACCAACAGGTCCCCGAGAGG
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     44387  5 +   2853901 ----GGG-CG-----------------------
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139448  6 +    465904 ----GGG-GGC----------------------
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211123  6 -    735872 ----GGG-GGC----------------------
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                102389 39 +  11138919 I
e colAng1.NW_012115411v1          188375  1 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=64632.000000
s hg38.chrX_KI270880v1_alt         57479 36 +    284869 AGAGCCTGGGCGGAACGC----------------------------------------GCATCAACAGGTCCCCGA
s panTro5.chrX                    178953 76 + 155549662 AGAGCCTGGGCGGAGCGCGCCTCAACAGGTCCCCGAGAGGAGAGCCTGGGCGGAGCGGGCATCAACAGGTCCCCGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125761 35 +    417917 AGAGCCTGGGCGGAGCGC----------------------------------------GCATCAACAGGT-CCCGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114043 34 + 149150640 AGAGCCTGGGCGGAGCGC----------------------------------------GCCCCAACAGGTCCCC--
i rheMac8.chrX                 I 157 C 0
s macFas5.chr7                 171700352 34 - 171882078 --AGCCTGGGTGGAGCGC----------------------------------------GCACGAACAGGTCCCCGA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121816 36 -   1025902 AGAGCCCGTGCGGAGCGC----------------------------------------GCACCAACAGGTCCCCGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106304 36 -    811265 AGAGCCCGGGGGGAGCGC----------------------------------------GCACCAACAGGTCCCCGA
i chlSab2.chrUn_KE147541v1     C 0 I 184
s manLeu1.NW_012108508v1           26285 36 -    350446 AGAGCCCGGGCGGAGCGC----------------------------------------GCACCAGCAGGTCCCCGA
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     44392  0 +   2853901 C
e cebCap1.NW_016107987v1          211129  0 -    735872 C
e saiBol1.JH378345                139454  0 +    465904 C
e otoGar3.GL873584                102389 39 +  11138919 I
e colAng1.NW_012115411v1          188375  1 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=16177.000000
s hg38.chrX_KI270880v1_alt         57515 10 +    284869 GAA-----------------------------------GAGAGCC
s panTro5.chrX                    179029 10 + 155549662 GAG-----------------------------------GAGAGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125796 10 +    417917 GAG-----------------------------------GAGAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114077 10 + 149150640 GAG-----------------------------------GAGAGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700386 10 - 171882078 GAG-----------------------------------GAGAGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121852 45 -   1025902 GAGGAGCCCGTGCGGAGCGCGCACCAACAGGTCCCCGAGAGAGCC
i cerAty1.NW_012001098v1       C 0 I 38
s chlSab2.chrUn_KE147541v1        106524 10 -    811265 GAG-----------------------------------GAGAGCC
i chlSab2.chrUn_KE147541v1     I 184 C 0
s manLeu1.NW_012108508v1           26321 10 -    350446 GAG-----------------------------------GAGAGCC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     44392  0 +   2853901 C
e cebCap1.NW_016107987v1          211129  0 -    735872 C
e saiBol1.JH378345                139454  0 +    465904 C
e otoGar3.GL873584                102389 39 +  11138919 I
e colAng1.NW_012115411v1          188375  1 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2021.000000
s hg38.chrX_KI270880v1_alt         57525 7 +    284869 TGGGGAC
s panTro5.chrX                    179039 7 + 155549662 TGGGGAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125806 7 +    417917 TGGGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114087 7 + 149150640 TGGGGAC
i rheMac8.chrX                 C 0 I 43
s macFas5.chr7                 171700396 7 - 171882078 TGGGGAC
i macFas5.chr7                 C 0 C 0
s chlSab2.chrUn_KE147541v1        106534 1 -    811265 T------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26331 1 -    350446 T------
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     44392 0 +   2853901 C
e cebCap1.NW_016107987v1          211129 0 -    735872 C
e saiBol1.JH378345                139454 0 +    465904 C
e otoGar3.GL873584                102389 39 +  11138919 I
e cerAty1.NW_012001098v1          121897 38 -   1025902 I
e colAng1.NW_012115411v1          188375 1 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-1695.000000
s hg38.chrX_KI270880v1_alt         57532 3 +    284869 GGC
s panTro5.chrX                    179046 3 + 155549662 GGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125813 3 +    417917 GGC
i gorGor5.CYUI01015925v1       C 0 C 0
s calJac3.chrY                     44392 2 +   2853901 GC-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139454 2 +    465904 GG-
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211129 2 -    735872 GG-
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           26332 0 -    350446 C
e otoGar3.GL873584                102389 39 +  11138919 I
e chlSab2.chrUn_KE147541v1        106535 0 -    811265 C
e cerAty1.NW_012001098v1          121897 38 -   1025902 I
e colAng1.NW_012115411v1          188375 1 +   1230721 I
e rheMac8.chrX                    114094 43 + 149150640 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e macFas5.chr7                 171700403 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3777.000000
s hg38.chrX_KI270880v1_alt         57535 3 +    284869 CTC
s panTro5.chrX                    179049 3 + 155549662 CTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125816 3 +    417917 CTC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          121935 3 -   1025902 CCC
i cerAty1.NW_012001098v1       I 38 C 0
s calJac3.chrY                     44394 3 +   2853901 CCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139456 3 +    465904 CGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211131 3 -    735872 CCC
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           26332 0 -    350446 C
e otoGar3.GL873584                102389 39 +  11138919 I
e chlSab2.chrUn_KE147541v1        106535 0 -    811265 C
e colAng1.NW_012115411v1          188375 1 +   1230721 I
e rheMac8.chrX                    114094 43 + 149150640 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e macFas5.chr7                 171700403 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=6017.000000
s hg38.chrX_KI270880v1_alt         57538 2 +    284869 GG
s panTro5.chrX                    179052 2 + 155549662 GG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125819 2 +    417917 GG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020901 2 - 149150640 GG
i rheMac8.chrX                 I 116 C 0
s cerAty1.NW_012001098v1          121938 2 -   1025902 GG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106535 2 -    811265 GG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26332 2 -    350446 GG
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     44397 2 +   2853901 AG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139459 2 +    465904 TG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211134 2 -    735872 GG
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                102389 39 +  11138919 I
e colAng1.NW_012115411v1          188375 1 +   1230721 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e macFas5.chr7                 171700403 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=155748.000000
s hg38.chrX_KI270880v1_alt         57540 36 +    284869 GGACCCAGGCGAAGGCGCTCCCCGC-GAGAAGTGAGG
s panTro5.chrX                    179054 36 + 155549662 GGACCCAGGCGAAGGCGCTCCCCGC-GAGAAGTGAGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125821 36 +    417917 GGACCCAGGCGAAGGCGCTCCCCGC-GAGAAGTGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020903 36 - 149150640 GGACCCAGTCGAAGGCGCTTCTCCC-GAGAAATAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700403 32 - 171882078 ----CCAGTCGAAGGCGCTTCTCCC-GAGAAATAGGG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          121940 36 -   1025902 GGACCCAGTCGAAGGCGCTCCCCCC-GAGAAATAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106537 36 -    811265 GGACCCAGTCGAAGGCGCTCCCCCC-GAGAAATAAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26334 36 -    350446 GGACCCAGTAGAAGGCGCTCCCCCC-GAGAAATAGGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188376 37 +   1230721 GGACCCAGTCGAAGGCGCTCCCCCCGGAGAAATAAGG
i colAng1.NW_012115411v1       I 1 C 0
s calJac3.chrY                     44399 36 +   2853901 GGACCCGAGCGAAGGCGCTGCCCCC-GAAAACTGAGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139461 36 +    465904 GGACCCGGGGGAAGGCGCTGCCCCC-AACAGTGAGGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211136 36 -    735872 GGACCCGGGCGAAGGCGCTGCCCCC-GACAAGTGAGG
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                102389 39 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-26418.000000
s hg38.chrX_KI270880v1_alt         57576 10 +    284869 T----------CCCCCCCCT
s panTro5.chrX                    179090 16 + 155549662 TTCCCCC----CCCCCCCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125857 12 +    417917 T----CC----CCCCCCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020939  9 - 149150640 T----CC-----CCCCCC--
i rheMac8.chrX                 C 0 I 40
s macFas5.chr7                 171700435  9 - 171882078 T----CC-----CCCCCC--
i macFas5.chr7                 C 0 I 3
s cerAty1.NW_012001098v1          121976 13 -   1025902 T----TCCCC-GCCCCCC--
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1        106573  8 -    811265 T----------GCCCCCC--
i chlSab2.chrUn_KE147541v1     C 0 I 3
s manLeu1.NW_012108508v1           26370 14 -    350446 T----CCCCCCTCCCCCC--
i manLeu1.NW_012108508v1       C 0 I 3
s colAng1.NW_012115411v1          188413 10 +   1230721 T----CC----TCCCCCC--
i colAng1.NW_012115411v1       C 0 I 3
s calJac3.chrY                     44435 12 +   2853901 C----CCCCCCGCCCC----
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139497  5 +    465904 C-----------CCCC----
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211172  5 -    735872 C-----------CCCC----
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102428 10 +  11138919 --------TCTTCCCCCA--
i otoGar3.GL873584             I 39 C 0
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=160723.000000
s hg38.chrX_KI270880v1_alt         57586 33 +    284869 CCACGACAACACCAGA-GCTGGCTG-CAGGCTCG-G
s panTro5.chrX                    179106 32 + 155549662 CCAC-ACAACACCAGA-GCTGGCTG-CAGTCTCG-G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125869 33 +    417917 CCACGACAACACCAGA-GCTGGCTG-CAGGCTCG-G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114137 34 + 149150640 CCATGACAACACCAGAGGCTGGCTG-CAGGCTCG-G
i rheMac8.chrX                 I 43 C 0
s macFas5.chr7                 171700447 33 - 171882078 CCATGACAACACCAGA-GCTGGCTG-CAGGCTCG-G
i macFas5.chr7                 I 3 C 0
s cerAty1.NW_012001098v1          121992 33 -   1025902 CCATGACACCACCAGA-GCTGGCTG-CAGGCTCG-G
i cerAty1.NW_012001098v1       I 3 C 0
s chlSab2.chrUn_KE147541v1        106584 33 -    811265 CCATGACAACACCAGA-GCTGGCTG-CAGGCTCG-G
i chlSab2.chrUn_KE147541v1     I 3 C 0
s manLeu1.NW_012108508v1           26387 33 -    350446 CCATGACAACACCAGA-GCTGGCTG-CAGGCTCG-G
i manLeu1.NW_012108508v1       I 3 C 0
s colAng1.NW_012115411v1          188426 33 +   1230721 CCACGACAACAGCAGA-GCTGGCTG-CAGGCTCG-G
i colAng1.NW_012115411v1       I 3 C 0
s calJac3.chrY                     44447 32 +   2853901 CCACGACGCCAGCAGA-CCTGGCTG-CAGGCTCG--
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139502 32 +    465904 CCACGACCCCAGCAGA-GCCGGCTG-CAGGGTCG--
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211177 33 -    735872 CCACGACACCAGCAGA-GCTGGCTG-CAGGCTCGG-
i cebCap1.NW_016107987v1       C 0 I 69
s otoGar3.GL873584                102438 34 +  11138919 CAGCGCCAAAACCAGA-CCTGGCTGAAAGGCCTG-G
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=7709.000000
s hg38.chrX_KI270880v1_alt         57619 4 +    284869 TGCC-
s panTro5.chrX                    179138 4 + 155549662 TGCC-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125902 4 +    417917 TGGC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114171 4 + 149150640 TGCC-
i rheMac8.chrX                 C 0 I 327
s macFas5.chr7                 171700480 4 - 171882078 TGCC-
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          122025 4 -   1025902 TGCC-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106617 4 -    811265 CGCC-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26420 4 -    350446 TGCC-
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188459 4 +   1230721 TGCC-
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                102472 4 +  11138919 -TCCT
i otoGar3.GL873584             C 0 C 0
e calJac3.chrY                     44479 0 +   2853901 C
e cebCap1.NW_016107987v1          211210 69 -    735872 I
e saiBol1.JH378345                139534 0 +    465904 C
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=255907.000000
s hg38.chrX_KI270880v1_alt         57623 68 +    284869 GACTCCGGCTTGCCCCTCCAGAGCACAGGGCACGCCAGGTGCAGCTGCGCCTCCACAAA--------CACGC-ACGG
s panTro5.chrX                    179142 68 + 155549662 GGCTCCGGCTTGCCCCTCCAGAGCGCAGGGCACGCCAGGTGCAGCTGCACCTCCACAAA--------CACGC-ACCG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125906 68 +    417917 GGCTCCGGCTTGCCCCTCCAGAGCACAGGGCACGCCAGGTGCAGCTGCGCCTCCACAAA--------CACGC-ACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149020988 70 - 149150640 CGCTCCGGCCCGCCCCTCCAGAGCCCAGGGCGCGCCAGGTGCAGCTGCGCCTCCACAAA------CACACGC-ACGG
i rheMac8.chrX                 I 40 C 0
s macFas5.chr7                 171700484 70 - 171882078 CGCTCCGGCCCGCCCCTCCAGAGCCCAGGGCGCGCCAGGTGCAGCTGCGCCTCCACAAA------CACACGC-ACGG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          122029 70 -   1025902 GGCTCCGGCCCGCCCCTCCAGAGCCCAGGGCGCGCCAGGTGCAGCTGCGCCTCCACAAG------CACACGC-ACGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106621 70 -    811265 GGCTCCCGCTCGCCCCTCCAGAGCGCAGGGCGCGCCAGGTGCAGCTGCGCCTCCACAAA------CACACGC-ACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26424 70 -    350446 GGTTCCGGCCCGCCCCTCCAGAGCCCAGGGCGCGCCAGGTGCAGCTGCGCCTCCACAAG------CACACGC-ACGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188463 76 +   1230721 GGCTCCGGCTCGCCCCTCCAGGGCCCAGGGCGCGCCAGGGGCAGCTGCGCCTCCACACACACACGCACACGC-ACGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44479 60 +   2853901 -----------GCCCCTCCAGAGCCACGGGCACGCCGGGTGCGGCTCCGCCTCCATAAA------CACAGGCTGAGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139534 60 +    465904 -----------GCCCCTCCAGGGCCCCGGGCACTCCAGGTGCGGCTGTGCCTCCGCAAA------CGCAGGCTGAAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                102476 52 +  11138919 ------GACTCTCCCCACT----------GCTCCCCAGGGGTACCTCAGCCTCTGCATC--------TGAGC-AGGA
i otoGar3.GL873584             C 0 I 27
e cebCap1.NW_016107987v1          211210 69 -    735872 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-16560.000000
s hg38.chrX_KI270880v1_alt         57691 7 +    284869 CAGCC---CA--
s panTro5.chrX                    179210 7 + 155549662 CAGTC---CA--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125974 7 +    417917 CAGCC---CA--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021058 5 - 149150640 CAGGC-------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700554 5 - 171882078 CAGGC-------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          122099 7 -   1025902 CAGGCCG-----
i cerAty1.NW_012001098v1       C 0 I 7
s chlSab2.chrUn_KE147541v1        106691 3 -    811265 CAG---------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26494 3 -    350446 CAG---------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188539 6 +   1230721 CAGGC--C----
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44539 7 +   2853901 CAGCC-----CG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139594 7 +    465904 CAGGC-----CG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          211210 69 -    735872 I
e otoGar3.GL873584                102528 27 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=8887.000000
s hg38.chrX_KI270880v1_alt         57698 13 +    284869 GACATCCCGGCAG
s panTro5.chrX                    179217 13 + 155549662 GACATCCCGGCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125981 13 +    417917 GACATCCCGGCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021063  8 - 149150640 -----CCCGGGAG
i rheMac8.chrX                 C 0 I 1
s macFas5.chr7                 171700559  8 - 171882078 -----CCCGGGAG
i macFas5.chr7                 C 0 I 1
s chlSab2.chrUn_KE147541v1        106694 10 -    811265 ---GGCCCGGGAG
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1           26497 10 -    350446 ---GCCCCGGGAG
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          188545  7 +   1230721 ------CCGGGAG
i colAng1.NW_012115411v1       C 0 I 1
s calJac3.chrY                     44546  9 +   2853901 GGCATCCAG----
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139601  9 +    465904 GGCATCCAG----
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          211210 69 -    735872 I
e otoGar3.GL873584                102528 27 +  11138919 I
e cerAty1.NW_012001098v1          122106  7 -   1025902 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=10800.000000
s hg38.chrX_KI270880v1_alt         57711 3 +    284869 CCC
s panTro5.chrX                    179230 3 + 155549662 CCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125994 3 +    417917 CCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021072 3 - 149150640 CCC
i rheMac8.chrX                 I 1 C 0
s macFas5.chr7                 171700568 3 - 171882078 CCC
i macFas5.chr7                 I 1 C 0
s cerAty1.NW_012001098v1          122113 3 -   1025902 CCC
i cerAty1.NW_012001098v1       I 7 C 0
s chlSab2.chrUn_KE147541v1        106705 3 -    811265 CCC
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1           26508 3 -    350446 CCC
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          188553 3 +   1230721 CCC
i colAng1.NW_012115411v1       I 1 C 0
e calJac3.chrY                     44555 0 +   2853901 C
e cebCap1.NW_016107987v1          211210 69 -    735872 I
e saiBol1.JH378345                139610 0 +    465904 C
e otoGar3.GL873584                102528 27 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=114860.000000
s hg38.chrX_KI270880v1_alt         57714 27 +    284869 GGCATCAAAGCGCGCCGGCATCTCCGC
s panTro5.chrX                    179233 27 + 155549662 GGCATCAAAGCGCGCCGGCATCTCCGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          125997 27 +    417917 GGCATCAAAGCGCGCCGGCATCTCCGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021075 27 - 149150640 AGCATCAGGGCACGCCTGCATCTCCGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700571 27 - 171882078 AGCATCAGGGCACGCCTGCATCTCCGC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          122116 27 -   1025902 AGCATCAGGGCACGCCTGCATCTCCGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106708 27 -    811265 GGCATCAGGGCATGCCTGCATCTCTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26511 27 -    350446 AGCATCAGGGCACGCCTGCATCTCCGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188556 27 +   1230721 AGCATCAGGGCACGCCTGCATCTCCGC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44555 16 +   2853901 -----------GCGCCCGCATCCCCGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139610 18 +    465904 ---------GCGCGCCTGCGTCCCCGC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211279 27 -    735872 GGCATCCAGGCGCGCCTGCCTCCCCGC
i cebCap1.NW_016107987v1       I 69 C 0
e otoGar3.GL873584                102528 27 +  11138919 I
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=311786.000000
s hg38.chrX_KI270880v1_alt         57741  74 +    284869 CCCTCCCCAAACTTCAGGAGTTTCTAGAATACAGCTAAGCTGCAGTGG-------------------------------------GCATCCAGGATCTCGTCTTCTCTGCC
s panTro5.chrX                    179260  74 + 155549662 CCCTCCCCAAACTTCAGGAGTTTCTAGAATACAGCTAAGCTGCAGTGG-------------------------------------GCATCCAGGATCTCGTCTTCTCTGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126024  74 +    417917 CCCTCCCCAAACTTCAGGAGTTTCTAGAATACAGCTAAGCTGCAGTGG-------------------------------------GCATCCAGGATCTCGTCTTCTCTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021102  74 - 149150640 CCCTCCCCAAACTTGAAGAGTTTCTAGAATCCAGCTAAGCTGCAGTGG-------------------------------------GCATCCAGGATCTCGTCTTCTCCGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700598  74 - 171882078 CCCTCCCCAAACTTGAAGAGTTTCTAGAATCCAGCTAAGCTGCAGTGG-------------------------------------GCATCCAGGATCTCGTCTTCTCCGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          122143  74 -   1025902 CCCTCCCCGAACTTGAAGAGTTTCTAGAATCCAGCTAAGCTGCAGTGG-------------------------------------GCACCCAGGATCTCGTCTTCGCCGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106735  74 -    811265 CCCTTCCCAAACTTGAGGAGTTTCTAGAATCCAGCTAAGTTGCAATGG-------------------------------------GCACCCAGGATCTCGTCTTCTCCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26538  74 -    350446 CCCTCCCCAAACTTGAAGAGTTTCTAGAATCCAGCTAAGCTGCAGTGG-------------------------------------GCACCCAGGATCTCGTCTTCGCCGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188583  73 +   1230721 CCCTTCCCACACTGGAAGAGTTTCTAGAATCCAGCTGAGCTGCA-TGG-------------------------------------GCATCCAGGAGCTCGTCCTCTCCGCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44571  60 +   2853901 CCCTCCCCAAGCTTGCAGACTTTCT------------AGCGGC-GGAG-------------------------------------GCACCTAGGATC-CATCTCCCGCGCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139628  73 +    465904 CCCTCCCCAAACTTGCAGAGTTTCTAGAAGACAAGTCAGCGGC-GTGG-------------------------------------GCGCCTAGGATCTCAGGTTCCCAGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211306  71 -    735872 CCCTCCCCAAACTTGCAG--TTTCTAGAATGCGGCTAAGCGGC-GTGG-------------------------------------GCACCGAGGATCTCATGTTCCCCACC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                102555 108 +  11138919 CCTTCACCAAACT-GTGGGGTTGGAAAAAAATAGTTAA-CCACAGTGGCTAGTCTAAAATGTTCTTTTCAAAGGTTGGGGGTGGAGCATTTGGGATTTTGTA-TCTGTGCC
i otoGar3.GL873584             I 27 C 0
e macNem1.NW_012017243v1          167073 1707 +  25972781 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=288096.000000
s hg38.chrX_KI270880v1_alt         57815 54 +    284869 ACTG--CTCACTGTGATAACTGCGCTTGTTTGCAATCGTATTTAGAACAAGAAAAG
s panTro5.chrX                    179334 54 + 155549662 ACTG--CTCACTGTGATAACTGCGCTTGTTTGCAATCGTATTTAGAACAAGAAAAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126098 54 +    417917 ACTG--CTCACTGTGATAACTGCGCTTGTTTGCAATCGTATTTAGAACAAGAAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021176 54 - 149150640 GCTG--CTCACTGTGGTAACTGCACTGGCTTGCGACCGTATTCAGAACAAGAAAAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700672 54 - 171882078 GCTG--CTCACTGTGGTAACTGCACTGGCTTGCGACCGTATTCAGAACAAGAAAAG
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          168780 54 +  25972781 ACTG--CTCACTGTGGTAACTGCACTGGCTTGCGACCGTATTCAGAACAAGAAAAG
i macNem1.NW_012017243v1       I 1707 C 0
s cerAty1.NW_012001098v1          122217 54 -   1025902 GCTG--CTCACTGTGGTAACTGCAGTTGCTTGTGACCGTATTCAGAACAAGAAAAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106809 54 -    811265 GCTG--CCCACTGTGGTGACTGCACTGGCTTGCGATCGTATTCAGAACAAGAAAAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26612 54 -    350446 GCTG--CTCACTGTGGTAACTGCAGTTGCTTGTGACCGTATTCAGAACAAGAAAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188656 54 +   1230721 GCTG--CTCACTGTGGTAACTGCACTCGCTTGCCATCGTATTTACAACAAGAAAAG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44631 56 +   2853901 GCCGCTCACACGGGGACCACGGCACTTGTTCACTGTCCTACTTAGAACAAGAGAAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139701 54 +    465904 ACGG--CGCACGGGGACCCCTGCACTTGTTTGCAATGCCACTTAGTCCAAGAGAAG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211377 54 -    735872 ACTG--CTCAAGGGGACCACTGCACTTGTTTGCAATCCCATCTAGAACAAGAGAAG
i cebCap1.NW_016107987v1       C 0 I 111
s otoGar3.GL873584                102663 53 +  11138919 ATTT--CTCACTTTGCTAACTGCACTTCTGTGT-ATCATACTTAGAATGAGAAAGA
i otoGar3.GL873584             C 0 C 0
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=213195.000000
s hg38.chrX_KI270880v1_alt         57869 55 +    284869 AGGG---GCGGTGG-AAAAGGGGGACGGGCAACTTT--AAATGAGGGTGAGCTGACATTCC
s panTro5.chrX                    179388 55 + 155549662 AAGG---GCGGTGG-AAAAGGGGGACGGGCAACTTT--AAATGAGGATGAGCTGACATTCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126152 54 +    417917 A-GG---GCGGTGG-AAAAGGGGGACGGGCAACTTT--AAATGAGGGTGAGCTGACATTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149021230 55 - 149150640 AGGG---GCGGTGG-AAAAGGGGGACGGGCCACGTT--AACCGAGGATGAGCTGAGCTTCC
i rheMac8.chrX                 C 0 I 780
s macFas5.chr7                 171700726 55 - 171882078 AGGG---GCGGTGG-AAAAGGGGGACGGGCCACGTT--AACCGAGGATGAGCTGAGCTTCC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          168834 55 +  25972781 AGGG---GCGGTGG-AAAAGGGGGACGGGCCACGTT--AACCGAGGATGAGCTGAGCTTCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122271 55 -   1025902 AGGG---GCGGTGG-AAAAGGGGGACGGGCCACGTT--GACCGAGGATGAGCTGACCTTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106863 55 -    811265 AGGG---GCGGTGG-AAAAGGGGGACGGGCCATGTT--GACTGAGGATGAGCTGACCTTCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26666 55 -    350446 AGGG---GTGGTGG-AAAAGGGGGACGGGCCACGTC--GACCGAGGATGAGCTGACCTTCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188710 54 +   1230721 AGGG---GCGGTGG-AAAAGGGGGACGGG-AACGTT--CACTGAGGATGAGCTGACATTCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44687 50 +   2853901 ---GAGAGCGGCGG-AGAAGCGGGACCCGCGGCTTTCCAAC------TGAGCTGACCTCA-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139755 46 +    465904 ---G---GCGGCGC-AGAGGCGGGACTGGCAGCTTTTCAAC------TGAGCTGACAT-G-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                102716 56 +  11138919 AGGG---GCAGTGGTAAAAGGTGGGCTTGGGACTGT--GAATGAGGCTGAGCCAACATTCC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          211431 111 -    735872 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1314.000000
s hg38.chrX_KI270880v1_alt         57924 1 +    284869 G
s panTro5.chrX                    179443 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126206 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          188764 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44737 1 +   2853901 G
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139801 1 +    465904 G
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                102772 1 +  11138919 A
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           26721 0 -    350446 C
e cebCap1.NW_016107987v1          211431 111 -    735872 I
e chlSab2.chrUn_KE147541v1        106918 0 -    811265 C
e cerAty1.NW_012001098v1          122326 0 -   1025902 C
e rheMac8.chrX                 149021285 780 - 149150640 I
e macNem1.NW_012017243v1          168889 0 +  25972781 C
e macFas5.chr7                 171700781 0 - 171882078 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=159327.000000
s hg38.chrX_KI270880v1_alt         57925 33 +    284869 GGGGCCTGCACCTCGATC-CCACCGGGAAGGAGA
s panTro5.chrX                    179444 33 + 155549662 GGGGCCTGCACCTTGATC-CCACCGGGAAGGAGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126207 33 +    417917 GGGGCCTGCACCTTGATC-CCACCGGGAAGGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114502 33 + 149150640 GGGGCCTGCACCGTCATC-CCACCGGGAGGGAGA
i rheMac8.chrX                 I 327 C 0
s macFas5.chr7                 171700781 33 - 171882078 GGGGCCTGCACCGTCATC-CCACCGGGAGGGAGA
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          168889 33 +  25972781 GGGGCCTGCACCGTCATC-CCACCGGGAGGGAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122326 33 -   1025902 GGGGCCTGCGCCGTCATC-CCACCGGGAGGGGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106918 33 -    811265 GGGGCCTGCACCGTCCTC-CCACCGGGAAGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26721 33 -    350446 GGGGCCTGCGCCGTCATC-CCACCGGGAGGGGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188765 32 +   1230721 -GGGCCTGCACCTGCATC-CCACCGGGAAGGAGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44738 29 +   2853901 GGGGCCTGCGCGTTCTTC-CCACCGGGAC----A
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139802 29 +    465904 GGGGCCGGCACGTCCACC-CCACCAGGAC----A
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                102773 34 +  11138919 GGTGCCTCCACCTTGGTCGCCACCTAGAAGGAAA
i otoGar3.GL873584             C 0 I 1952
e cebCap1.NW_016107987v1          211431 111 -    735872 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=135826.000000
s hg38.chrX_KI270880v1_alt         57958 34 +    284869 CAGGATACCTTCGGGCTGAGGGTCAGAAACTGGC
s panTro5.chrX                    179477 34 + 155549662 CAGGATACCTTCGGGCTGAGGGTCAGAAACTGGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126240 34 +    417917 CAGGATACCGTCGGGCTGAGGGTCAGAAACTGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114535 34 + 149150640 CAGGACACCTGCGGGTTGACGGTCAGAAACTGGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700814 34 - 171882078 CAGGACACCTGCGGGCTGACGGTCAGAAACTGGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          168922 34 +  25972781 CAGGACACCTGCGGGCTGACGGTCAGAAACTGGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122359 34 -   1025902 CAGGGCACCTGCGCGCTGACGGTCAGAAACTGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106951 34 -    811265 CAGGACACCTGCGGGCTGACGGTCAGAAACTGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26754 34 -    350446 CAGGGCACCTGCGGGCTGACGGTCAGAAACTGGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188797 34 +   1230721 CAGGAGACCTTGGGGCTGAGGGTCCCAAACTGGC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44767 30 +   2853901 C---AGACCT-CGGGCCGCAGGTCAGAAGCTCAG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139831 33 +    465904 CAGGAGGCCT-GCGGCCGAAGGTCAGAGCCTGGG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          211431 111 -    735872 I
e otoGar3.GL873584                102807 1952 +  11138919 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=367005.000000
s hg38.chrX_KI270880v1_alt         57992 86 +    284869 CACATCCCTGCCAGGCTGAACGCTGTCAGCAGAAAGCCTCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCtgcatctgtt
s panTro5.chrX                    179511 86 + 155549662 CACATCCCTGCCAAGCTGAACGCTGTCAGCAGAAAGCCTCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACTGCCtgcatctgtt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126274 85 +    417917 CACATCCCTGCCAGGCTGAACGCTGTCAGCAGAAAGCCTCCCGGGT-CCCGATCAGGAAGGTCCTGCGTGACCGCCtgcatctgtt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114569 52 + 149150640 CACA----------------------------------TCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCTGTGCCCgtt
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700848 52 - 171882078 CACA----------------------------------TCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCTGTGCCCgtt
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          168956 52 +  25972781 CACA----------------------------------TCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCTGTGCCCgtt
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122393 86 -   1025902 CGCATCCCGGCCAGGCCGAACGCTGTCACCAGAAACCCTCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCtgcacccgtt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        106985 85 -    811265 CCCATCCCGGCCAGGCCGAACGCGGTCAGCAGAAG-CCTCCCGGGTCCCGGATCAGGAACGTCCTGCGTGGCCGCCTGCGCCTGTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26788 86 -    350446 CACATCCCGGCCAGGCCGAACGCTGTCAGCAGAAACCCTCCCGGGTCCCCGATCAGGAAGGTCCTGCGTGACCGCCtgcacccgtt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188831 86 +   1230721 CACATCCCGGCCAGGCCGGACGCTGTCAGCAGAAAGCCTCCCGGGTCCCCGATCAGGAAGGCCCTGCGTGACCCCCTGTGTCCgtt
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44797 86 +   2853901 CACACCCCTGCCCGGCTGCACGCTGCCAGCAGAAGGCGTCCCAGCTCCCCGACCCGCACGGTCCTGCGTGGCGACgtgcgtttgct
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139864 86 +    465904 CACAGCCCTGCCAGGCCGGCCGCTGTCAGCAGAAGGCCTCCCAGCTCCCCGATCAGGAAGGCCCTGCGTGACGGCGCGCGCttggt
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211542 86 -    735872 CACACCCCTGCCAGGCTGGACGCTGTCAGCAGAAGGCCTCCCAGCTCCCCGATCAGGAAGGTCCTGCGTGACGGCGCGcgtttggt
i cebCap1.NW_016107987v1       I 111 C 0
e otoGar3.GL873584                102807 1952 +  11138919 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=744432.000000
s hg38.chrX_KI270880v1_alt         58078 133 +    284869 acagtcaataaacctccttggacgggtcactatcaccccgagtcaacagcgtgcactgggctctcccgctgccgcacgctctgttgagtctggaaaaacgcaggatgacacggatctaccactgt--ggggtcac
s panTro5.chrX                    179597 133 + 155549662 acagtcaatgaacctccttggacgggtcactatcaccccaagtcaacagcgtgcactgggctctcccgctgccgcacgctctgttgagtctggaaaaacgcaggatgacacagatctaccactgt--ggagtcac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126359 133 +    417917 acagtcaatgaacttcctcggacgggtcactagcaccccgagtcaacagcgtgcactgggctctcccgctgccgcatgctgtgttgagtctggaaaaacgcaggatgacacggatctaccactgt--ggggtcac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114621 133 + 149150640 acagtcaatgaacctccctggacgggtcattatcaccccgaggcaacagcgtgcacggggctctcccgctgccgcacactctgttgagtctgcagaaacgcagaatgacacggatctaccactgt--gcggtcat
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171700900 133 - 171882078 acagtcaatgaacctccctggacgggtcattatcaccccgaggcaacagcgtgcacggggctctcccgctgccgcacactctgttgagtctgcagaaacgcagaatgacacggatctaccactgt--gcggtcat
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          169008 133 +  25972781 acagtcaatgaacctccctggacgggtcattatcaccccgaggcaacagcgtgcacggggctctcccgctgccgcacactctgttgagtctgcagaaacgcagaatgacacggatctaccactgt--gcggtcat
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122479 131 -   1025902 acagtcaatgaaattccctggacgggtcattatcaccccgaggcaacagcgtgcacggggctctcccgctgccg--cactctgttgagtctgcagaaacgcagaatgacacggatctaccactgt--acggtcat
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107070 131 -    811265 --agtcactgaacctccctggacgggtcattatcaccccgaggcagcagcgtgcacggggctctcccgctgccgcacacactgttgagtctgcaaagacgcagaatgacacggatctaccactgt--ggggtcat
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           26874 131 -    350446 acagtcaatgaaattccctggacgggtcattatcaccccgaggcaacagcgtgcacggggctctcccgctgccg--cactctgttgagtctgcagaaacgcagaatgacacggatctaccactgt--gcggtcat
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          188917 131 +   1230721 acagtcaatgcacctccttggacgggtcacgatcaccccgagtcaac--cgggcactgggctctcccgctgccgcacacgctgttgagtctgcaaaaacgcaggatgacacggatctaccgctgt--ggggtcat
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     44883 133 +   2853901 acagtcagtggacctcgttggacgggtcactttcaccccgagtccacggcctgcactgtgccatcctgctgccgcaggctctg-tgggcctggaaaagctcatgacgacgcggatctcccaccgt-gggggtcac
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                139950 131 +    465904 gcagtcagtgaacctccctgcacgggtcaccgtca-cccgaggccacgggctgcagtgcggtgtcccgccggcgcaggctccg-tgggtctggaagagcgcacgatgacacggatctcctaccgt--ggggtcac
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          211628 132 -    735872 acagtcagtgaacctccttggactgctcactatcaccccgagtcaacggcgtgcactgcgctgtcccgctgccgcaggctctg-tgggtctggaaaagcgcatgatgacaccaatctcccaccgt--gggatcac
i cebCap1.NW_016107987v1       C 0 I 455
s otoGar3.GL873584                104759 128 +  11138919 accaccgatggaccaacatggacatgtcaccatcagccagggtccacag--ttcatttcgagtccacgct-cagcactttctg-tgggtctggaagaacatgaagtgacaagtgt---ccactggaaaaggttgt
i otoGar3.GL873584             I 1952 C 0
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1088052.000000
s hg38.chrX_KI270880v1_alt         58211 263 +    284869 gcagaggagtttccctgccctgaaaaacgtctgtgtggcactgacgcac----ccaa------------cccccgc------------------aagccccgatc---tgtttcctgtctccatcgtttt-cctttttccgagtgtcctagacttggaacca-ga--agtctgcagccatctcagactggccttttCTTCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTGACGCCCACCACAGC---------------------------------------------------CCCCCACCCG-------------CAAGGCCCCTTCCAACTCTTCTTAGG----GGTACGCcc---ctctccacttccttctctt
s panTro5.chrX                    179730 264 + 155549662 gcagaggagtttccctgccctgaaaaacgtctgtgtggcactgacgcac----ccaac-----------cccccgc------------------aagccccgatc---tgtttcctgtctccatcgtttt-cctttttccgagtgtcctagacttggaacca-gc--agtctgcagccatctcagactggccctttcTTCTCCTGCAA-------------------------CCTTTCACA-CCACCTCTGACGCCCACCACAGC---------------------------------------------------CCCCCACCCG-------------CAAGGCCCCTTCCAACTCTTCTTAGG----GGTATGCcc---ctctccacttccttctctt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126492 262 +    417917 gcagaggagcttccctgccctgaaaaacgtctgtgtggcactgacgcac----ccaa------------cccccgc------------------aagccccgatc---tgtttcctgtctccatcgtttt-cctttttccgagtgtcctagacttggagcca-gc--agtctgcagccatctcagactggccctttcTTCTCCTGCAA-------------------------CCTTCCACA-TCACCTCTGACGCCCACCACAG----------------------------------------------------CCCCCACCCG-------------CAAGGCCCCTTCCAACTCTTCTTAGG----GGTACGCcc---ctctccacttccttctctt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    114754 261 + 149150640 gcagagaag--cccctgccccgaaaaacgtc-gtgtggcaccgacgcac----ccct------------ccctccc----tcct----------aacccccgatc---tgtttcctgtctccatcgtttt-ccttttcccgagtgtcctagacttggaacca-gc--agtctgcagccatctcagactgg---cctcttCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTCACGCCCACCGCAGC---------------------------------------------------TCCCCACCCT-------------CAACGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTCCTTCTCTT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701033 261 - 171882078 gcagagaag--cccctgccccgaaaaacgtc-gtgtggcaccgacgcac----ccct------------ccctccc----tcct----------aacccccgatc---tgtttcctgtctccatcgtttt-ccttttcccgagtgtcctagacttggaacca-gc--agtctgcagccatctcagactgg---cctcttCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTCACGCCCACCGCAGC---------------------------------------------------TCCCCACCCT-------------CAACGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTCCTTCTCTT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          169141 264 +  25972781 gcagagaag--ccccggccccgaaaaacgtc-gtgtggcaccgacgcac----ccct------------ccctccc----tcct----------aactcccgatc---tgtttcctgtctccatcgtttt-ccttttcccgagtgtcctagacttggaacca-gc--agtctgcagccatctcagactggcctcctCTTCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTCACGCCCACCGCAGC---------------------------------------------------TCCCCACCCT-------------CAACGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTCCTTCTCTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          122610 270 -   1025902 gcagaggag--cccctgccccgaaaaacgtc-gtgtggcaccgacgcacccctccct------------ccctccc----tcct----------aacccccgatc---tgtttcctgtctccatcgtttt-ccttttcccgagtgtcctagacttggaacca-gcagagtctgcagccatctcagactggcctcttCTTCTCCTGCAA-------------------------CCTTCCACA-CCACTTCTCACGCCCACCACAGC---------------------------------------------------TCCCCACCCT-------------CAACGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTCCTTCTCTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107201 271 -    811265 gcagaggagtctccctgccccgaaaaacgtc-gtgtggcaccgacgcac----ccct------------ccctccc-----cctaa-ccccggcaacccccgatc---tgtttcctgtctccatggtttt-ccttttcccgagtgtcctacacatggaacca-gc--agtctccagccatctcagactggcc---tcttCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTCACGCCCACCACAGC---------------------------------------------------TCCCCACCCT-------------CACCGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTccttctctt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27005 282 -    350446 gcagaggag--cccctgccccgaaaaacgtc-gtgtggcaccgacgcac----ccct------------ccctccctccctcctaa-ccccggcaacccccgatctgttgtttcctgtctccatcgcttt-cctttttccgagtgtcctacagttggaacca-gcagagtctgcagccatctcagactggcctcttCTTCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTCACGCCCACCACAGC---------------------------------------------------TCCCCACCCT-------------CAACGCCCCTTCCCACTCCTCTTAGG----GGGACGCCC---CTCTCCACGTCCTTCTCTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189048 276 +   1230721 gcagaggagtttccctgccccgaaaaacgtcggtgtggcacccacgcac----ccct------------ccctccc----tcctaa-ccccgccaacccccgatc---tgtttcctgtctccatggtttc-cctttttcccagtgtcccagactgggaacca-gc--actctgcagccatctcagactggcctcttCTTCTCCTGCAA-------------------------CCTTCCACA-CCACCTCTTACGCCCACCACAGC---------------------------------------------------GCCCCACCCT-------------CAACGCCCCTTCCAACTCTTCTTAGG----GGGACGCGC---CTCTCCACTTCCTTCTCTT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45016 263 +   2853901 aagtag----ttccctgccctgagaaacgc--gcgtgccacagacgcac----ctctccctccga----ccctccc----ttgtca-ccccag-cagccccgatc---tgcttcctg--------gtctc-c-TTTTTCCGAGTATCCTAGACTTGGAACCACGC--AGGGTGCA-----CACAGACTGGCCTTTTCTTCTG---AAA-------------------------CCTTACTCA-CTGCCTCTCCCGCCCACCAGAGC---------------------------------------------------ACCCAGCC---------------CAACGCCCCTTCCAATTCTTCTGAGGGTACGGTACGTCC---GCGTCCCCTTCCTTGTCCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                140081 270 +    465904 acggagcagcttcccggccccgagacacgc--gtgcgccgcagacgcac----ccctccctccgcccgtccctccc----tcctca-ccccag-cacccccgacc---tgtttcctg--------ctctt-cgtttttgcgagtatcctagacttggaaccacgc--agtgtgca-----CACAGACCAGCCTACTCTTCGGTGTAAG-------------------------GCTTCCTCG-CCGCCTCTCACGCCTGCCGCAGC---------------------------------------------------GCCCACCC---------------CAGGGCTCCTCGCCATGCTTCCGAGG----GGTACGCCC----CGTCCACTCCCTTCTCCT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                104887 368 +  11138919 gcatagcactctcactgccctgaaggtcctctgtgctccccctgctcac----ctct------------ccctgcc----ccccaagccttggcaacacctggcc-----tctctggtctctgtagtcctgccttctccagaatgtcccacagttgcaagcacac--agcgtg--gccatgtcacactgacctTGTATCCCCAGTCAACTCTAAGGAAGGAGCTGCCCCTGCCCCATCCATAGccatccctttcctctgtcccatcccttccttcctgtctcatcccttcttccctgtctcatccctgtcccgtccatccctaccctgtccttttctccccactgtgtttctccactttccttgcc----tgttcctccACCTTTTCCACTTCTTTTTTTt
i otoGar3.GL873584             C 0 I 112
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=845029.000000
s hg38.chrX_KI270880v1_alt         58474 174 +    284869 ccacctcc---------------ttcccttc---tccagccatcctcggatcc--ctccatccttctcacttccttactgtccttGAGGATTCAGAAGTCGGCCTCTGACCCCCGGTAAGTCTCCAAAGGGAAGCTTTAAGACAGCACCAGAGGGAATGTGCTCAAACCACCAGGAGACGATTTAAACAAGTGC
s panTro5.chrX                    179994 174 + 155549662 ccacctcc---------------ttcccttc---TCCAGCCATCCCCGGATCC--CTCCATCCTTCTCACTTCCTTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTGTAAGTCTCCAAACGGAAGCTTTAAGACAGCACCAGAGGGAATGTGCTCAAACCACCAGGAGACGATTTAAACAAGTGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126754 173 +    417917 ccacctcc---------------ttcccttc---tccagccatcc-cggatcc--ctccatccttctcacttccttactgtccttGAGGATTCAGAAGTCAGCCTCTGACCCCCTGTAAGTCTCCAAACGGAAGCTTTAAGACAGCACCAGAGGGAATGTGCTCAAACCACCAGGAGACGATTTAAACAAGTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115015 174 + 149150640 CCACCTCT---------------CTCCCTTC---TCCAGCCGTCCCTGCATCC--CTCCATCCTTCTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTTTAAGTCTCCAAACAGAAGCTTAAAGACAGCCCCAGAGGGAGTGTGCTCAAACCACCAGGAGACGATTTAAGTAAGTGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701294 174 - 171882078 CCACCTCT---------------CTCCCTTC---TCCAGCCGTCCCTGCATCC--CTCCATCCTTCTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTCTAAGTCTCCAAACAGAAGCTTAAAGACAGCCCCAGAGGCAGTGTGCTCAAACCACCAGGAGACGATTTAAATAAGTGC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          169405 174 +  25972781 CCACCTCT---------------CTCCCTTC---TCCAGCCGTCCCTGCATCC--CTCCATCCTTCTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTCTAAGTCTCCAAACAGAAGCTTAAAGACAGCCCCAGAGGCAGTGTGCTCAAACCACCAGGAGACGATTTAAATAAGTGC
i macNem1.NW_012017243v1       C 0 M 960
s cerAty1.NW_012001098v1          122880 174 -   1025902 CCACCTCC---------------TTCCCTTC---TCCAGCCGTCCCTGGATCC--CTCCATCCTTTTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTCTAAGTCTCCAAACAGAAGCTTAAAGACAGCCCCAGAGGGAGTGTGCTCAAACCACCAGGAGACGATTTAAATAAGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107472 177 -    811265 ccacctcc---------------ttcccttcccttccAGCCGTCCCTGGACCC--CTCCATCCTTCTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTCTAAGTCTCCAAACAGAAGCTTAAAGTCAGCCCCAGAGGGAGTGTGTTCAAACCACCAGGAGACGATTTAAACAAGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27287 174 -    350446 CCACCTCC---------------TTCCCTTC---TCCAGCCGTCCCTGGATCC--CTCCATCCTTCTCATTTCCCTACTGTCCTTGAGGATTCAGAAGTCGGCCTCTGACCCCCTCTAAGTCTCCAAACAGAAGCTTAAAGACAGCCCCAGAAGGAGTGTGCTCAAACCACCAGGAGACGATTTAAACAAGTGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189324 174 +   1230721 CCACCTCC---------------TTCCCTTC---TCCAGCCGTCCCTGGATCC--CTCCATCCTTCTCATTTCCTTCCCGTCCTTGAGGATTCAGAAGTCGGCATCTGACCTCCTCTAAGTCTCCAAACAGTAGCTTAAACACAGCCCCAGAGGGAATGTGCTCAAACCACCAGGAGACGATTTAAACAAGTGC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45279 152 +   2853901 G-----------------------------------CAGCCATGCCCGGATCT--TTCCATTC---TCATTTCCTTGCTGTCCCTGAGGATTCCGAAGCCAGCCTCTGAC--CCTCTAGGTCTCCAAACGGAAGCTATAAGGCAGCACCGGAGGAAACGTGGTCCAATCTCCAGGAGATGACTTAAACGAGGGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                140351 138 +    465904 TC--------------------------------TCCAGCCGTGCCCGGATCC--TTCCATGCTTGTCATTCCCTTCTTGTCCTCGGGGACTCACAAGCCAGCCTCCGAC--CCTCTAGGCCTCCTGACGGAAGCTGAAAGGCAGCACCGGAGGAAATGTGGCCCAATC--------------------AGTGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                105367 185 +  11138919 ccacctccagtatatggggccggtgcccttc---tcctttgagccacaggtgctgcccCATCTTTCCCACTTCTTAACCATTGCTGAGGATTCAGAAGTCTGCCTCCCACCCCACTAAGTTCTCTAGAAAGAAGCTCAAGAACAGGACCAG-GGGCGTGTATTCAAACA--TGAGGGACAATC---ACAAATGC
i otoGar3.GL873584             I 112 C 0
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=14097.000000
s hg38.chrX_KI270880v1_alt         58648 8 +    284869 ACCCAGTA--
s panTro5.chrX                    180168 8 + 155549662 ACCCAGCA--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126927 8 +    417917 ACCCAGTA--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115189 8 + 149150640 GCCCAGTC--
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701468 8 - 171882078 GCCCAGTC--
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123054 8 -   1025902 GCCCAGTC--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107649 8 -    811265 GCCCAGTC--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27461 8 -    350446 GCCGAGTC--
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189498 7 +   1230721 GCCC-GTC--
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45431 8 +   2853901 ACCCAGTG--
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                140489 8 +    465904 ACCCGGTG--
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                105552 7 +  11138919 ---AAGAGGA
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=9847.000000
s hg38.chrX_KI270880v1_alt         58656 11 +    284869 ACCCACGATGC----
s panTro5.chrX                    180176 11 + 155549662 ACCCACGATGC----
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126935 10 +    417917 A-CCACGATGC----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115197 11 + 149150640 CTCCACGATGC----
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701476 11 - 171882078 CTCCACGATGT----
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123062 11 -   1025902 CCCCACGATGC----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107657 11 -    811265 CCCCACGATgc----
i chlSab2.chrUn_KE147541v1     C 0 I 1460
s manLeu1.NW_012108508v1           27469 11 -    350446 CCTCACGATGC----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189505 11 +   1230721 CCCCACCACGC----
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45439  4 +   2853901 ----ACTT-------
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                105559 10 +  11138919 -----AAGTGTGACC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=30198.000000
s hg38.chrX_KI270880v1_alt         58667 9 +    284869 GGGGCGCAA
s panTro5.chrX                    180187 9 + 155549662 GGGGCGCAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          126945 9 +    417917 GGGGCGCAA
i gorGor5.CYUI01015925v1       C 0 I 710
s rheMac8.chrX                    115208 9 + 149150640 GGGGCGCAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701487 9 - 171882078 GGGGTGCAA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123073 9 -   1025902 GGGGCGCAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109128 9 -    811265 GGGGCGCAA
i chlSab2.chrUn_KE147541v1     I 1460 C 0
s manLeu1.NW_012108508v1           27480 9 -    350446 GGGGCGCAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189516 9 +   1230721 GGGGCGCAA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45443 3 +   2853901 -GGG-----
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                105569 9 +  11138919 AGGACACAC
i otoGar3.GL873584             C 0 C 0
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497 0 +    465904 C
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=77192.000000
s hg38.chrX_KI270880v1_alt         58676 23 +    284869 ACTCACAG-------GGCAGAGGTGCCGCC
s panTro5.chrX                    180196 23 + 155549662 ACTCACAG-------GGCAGAGGTGTCATC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127664 23 +    417917 ACTCACAG-------GGCAGAGGTGCCGCC
i gorGor5.CYUI01015925v1       I 710 C 0
s rheMac8.chrX                    115217 30 + 149150640 ACTCACAGGGCACACGGCAGAGGCGCAGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701496 23 - 171882078 ACTCACAG-------GGCAGAGGCGCCGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123082 22 -   1025902 ACTCACA--------GGCAGCGGCGCCGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109137 23 -    811265 ACTCACAG-------GGCACAGGCGCCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27489 23 -    350446 ATTCACAG-------AGCAGAGGTGCCGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189525 30 +   1230721 ACTCACAGGGCACAGGGCAGAGGCGCCGCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45446 21 +   2853901 --TCACAG-------GGCACAGCTGCCGCC
i calJac3.chrY                 C 0 C 0
s otoGar3.GL873584                105578 23 +  11138919 ACTTCCAG-------TGCAGAAGCGCTGCC
i otoGar3.GL873584             C 0 I 695
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=4500.000000
s hg38.chrX_KI270880v1_alt         58699 1 +    284869 C
s panTro5.chrX                    180219 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127687 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115247 1 + 149150640 C
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701519 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123104 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109160 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27512 1 -    350446 C
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189555 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45467 1 +   2853901 C
i calJac3.chrY                 C 0 I 525
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497 0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=91726.000000
s hg38.chrX_KI270880v1_alt         58700 34 +    284869 AGTCACCCACGATGCGGGGCGCAAACT-------CACAGGG
s panTro5.chrX                    180220 33 + 155549662 AGTCACCCAC-ATGCGGGGCGCAAACT-------CACAGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127688 34 +    417917 AGTCACCCACGATGCGGGGCACAAACT-------CACAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115248 34 + 149150640 AGTCCCCAACCATGCGGGGCGCAAACT-------CACAGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701520 34 - 171882078 AGTCCCCCACGATGCGGGGCGCAAACT-------CACAGGG
i macFas5.chr7                 C 0 I 7
s cerAty1.NW_012001098v1          123105 34 -   1025902 AGTCCCCCACCCTGCGGGGCGCAAACT-------CACAGGG
i cerAty1.NW_012001098v1       C 0 I 40
s chlSab2.chrUn_KE147541v1        109161 34 -    811265 AGTCCCCCACCATGCGGGGTGCAAACT-------CACAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27513 41 -    350446 AGTCCCCCACGATGCGGGGCGCAAACTCACAAGGCACAGGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189556 33 +   1230721 AGTCCCCCATGATG-GGGGCGCAAACT-------CACAGGG
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=69317.000000
s hg38.chrX_KI270880v1_alt         58734 24 +    284869 CAGAGGTGCTGCCCAGTCACCCAC
s panTro5.chrX                    180253 24 + 155549662 CAGAGGTGCCGCCCAGTCACCCAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127722 24 +    417917 CAGAGGTGTCGCCCAGTCACCCAC
i gorGor5.CYUI01015925v1       C 0 I 45
s rheMac8.chrX                 149022065 24 - 149150640 CAGAGGCGCAGCCCAGTCCCCAAC
i rheMac8.chrX                 I 780 C 0
s macFas5.chr7                 171701561 24 - 171882078 CAGAGGCGCAGCCCAGTCCCCAAC
i macFas5.chr7                 I 7 C 0
s cerAty1.NW_012001098v1          123179 24 -   1025902 CAGAGATGCCGCCCAGTCCCCCAC
i cerAty1.NW_012001098v1       I 40 C 0
s chlSab2.chrUn_KE147541v1        109195 24 -    811265 CAGAGGCGCCGCCCAGTCCCCCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27554 24 -    350446 CAGAGGCGCCGCCCAGTCCCCCAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189589 24 +   1230721 CAGAGGCGCCGCCCAGTCCCCCAC
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-600.000000
s hg38.chrX_KI270880v1_alt         58758 1 +    284869 G
s rheMac8.chrX                 149022089 1 - 149150640 C
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701585 1 - 171882078 C
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123203 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109219 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27578 1 -    350446 G
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189613 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497 0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    180277 0 + 155549662 C
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e gorGor5.CYUI01015925v1          127746 45 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=65970.000000
s hg38.chrX_KI270880v1_alt         58759 21 +    284869 ATGCAGGATGCAAACTCACAG
s panTro5.chrX                    180277 21 + 155549662 ATGCGGGGCGCAAACTCACAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127791 21 +    417917 ATGCGGGGCGCAAACTCACAG
i gorGor5.CYUI01015925v1       I 45 C 0
s rheMac8.chrX                 149022090 21 - 149150640 ATGCGGGGCGCAAACTCACAG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701586 21 - 171882078 ATGCAGGGCGCAAACTCACAG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123204 21 -   1025902 AAGCGGGGCGCAAACTCACAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109220 21 -    811265 ATGCGGGGCGCAAACTCACAG
i chlSab2.chrUn_KE147541v1     C 0 I 7
s manLeu1.NW_012108508v1           27579 21 -    350446 ATGCGGGGCGCAAACTCACAG
i manLeu1.NW_012108508v1       C 0 T 128
s colAng1.NW_012115411v1          189614 21 +   1230721 ACGCAGGGCGCAAACTCACAG
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=57858.000000
s hg38.chrX_KI270880v1_alt         58780 26 +    284869 GGCAGAGGTGCCGCCCAGTCACCCAC
s panTro5.chrX                    180298 26 + 155549662 GGCAGAGGTGCCGCCCAGTCACCCAC
i panTro5.chrX                 C 0 I 47
s gorGor5.CYUI01015925v1          127812 25 +    417917 GGCAGAGGTACCG-CCAGTCACCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022111 26 - 149150640 GGCAGAGGCGCCGCCCAGTCCCCCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701607 26 - 171882078 GGCAGAGGCGCCGCCCAGTCCCCCAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123225 26 -   1025902 AGCAGAGGTGCCGCCCAGTCCCCCAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109248 26 -    811265 GGCAGAGGCGCCGCCCAGTCCCCCAC
i chlSab2.chrUn_KE147541v1     I 7 C 0
s colAng1.NW_012115411v1          189635 26 +   1230721 GGCAGAGGCGCCACTCAGTCCCCCAC
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e manLeu1.NW_012108508v1           27600 128 -    350446 T
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=49578.000000
s hg38.chrX_KI270880v1_alt         58806 34 +    284869 GATGCAGGATGCAAACTCACAGGG-------------------------------------------------------CAGAGGTGCG
s panTro5.chrX                    180371 34 + 155549662 GATGCAGGATGCAAACTCACAGGG-------------------------------------------------------CAGAGGTGCC
i panTro5.chrX                 I 47 C 0
s gorGor5.CYUI01015925v1          127837 33 +    417917 -ATGCGGGGCGCAAACTCACAGGG-------------------------------------------------------CAGAGGTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022137 41 - 149150640 GATGCGGGGCGCAAACTCACAGGG------------------------------------------------CACAGGGCAGAGGCGCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701633 89 - 171882078 GATGCGGGGCGCAAACTCACAGGGCACAGGGCAGAGGCGCAGCCCAGTCCCCAACCATGCAGGGCGCAAACTCACAGGGCAGAGGCGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123251 41 -   1025902 GATGCGGGGCGCAAACTcacagag------------------------------------------------cacagggcagaggcgca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109274 81 -    811265 AATGCGGGGCGCAAACTCACAGGGCACAGGGCAGAGG-------CAGTCCCCCACGATGCGGGGTGCAAACTCACA-GGCAGCGGCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189661 34 +   1230721 CATGCAGGGTGCAAACTCACAGGG-------------------------------------------------------CAGAGGTGCG
i colAng1.NW_012115411v1       C 0 T 143
e calJac3.chrY                     45468 525 +   2853901 I
e manLeu1.NW_012108508v1           27600 128 -    350446 T
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=29705.000000
s hg38.chrX_KI270880v1_alt         58840 15 +    284869 GCCCAGTAACCCATG
s panTro5.chrX                    180405 15 + 155549662 GCCCAGTAACCCATG
i panTro5.chrX                 C 0 T 96
s gorGor5.CYUI01015925v1          127870 15 +    417917 GCCCAGTAACCCACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022178 15 - 149150640 GCCCAGTCCCCAACC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701722 15 - 171882078 GCCCAGTCCCCCACG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123292 15 -   1025902 gcccagtcccccacg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109355 15 -    811265 GCCCAGTCCCCCACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189552 15 +   1230721 GCCCAGTCCCCCATG
i colAng1.NW_012115411v1       T 143 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e manLeu1.NW_012108508v1           27600 128 -    350446 T
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=76908.000000
s hg38.chrX_KI270880v1_alt         58855 44 +    284869 ATGTGGGGCACAAACT---------------------------------------CACAG-------GGCAGAGGTGCCGTCCCGTCACC
s panTro5.chrX                    180324 44 + 155549662 ATGCGGGGCGCAAACT---------------------------------------CACAG-------GGCAGAGGTGCCGCCCAGTCACC
i panTro5.chrX                 T 96 C 0
s gorGor5.CYUI01015925v1          127885 44 +    417917 ATGCGGGGCACAAACT---------------------------------------CACAG-------GGCAGAGGTGTCGCCCAGTCACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022193 44 - 149150640 ATGCAGGGCGCAAACT---------------------------------------CACAG-------GGCAGAGGCGCCGCCCAGTCCCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701737 51 - 171882078 ATGCGGGGCGCAGACTCACA--------------------------------GGGCACAG-------GGCAGAGGCGCCACCCAGTCCCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123307 51 -   1025902 atgcggggcgcaaactcaca--------------------------------gggcacag-------ggcagaggTGCCGCCCAGTCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109370 90 -    811265 TTGCGGGGCGCAGACTCACAGGCAGCGGCGCCGCCCAGTCCCCCACGTTGCGGGGCGCAGACTCACAGGCAGAGGCGCCGCCCAGTCCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189567 43 +   1230721 ATG-GGGGCGCAAACT---------------------------------------CACAG-------GGCAGAGGCGCCGCCCAGTCCCC
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e manLeu1.NW_012108508v1           27600 128 -    350446 T
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=81353.000000
s hg38.chrX_KI270880v1_alt         58899 27 +    284869 CACGATGCGGGGCGCAAACTCACAGGA
s panTro5.chrX                    180368 27 + 155549662 CACGATGCAGGATGCAAACTCACAGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127929 27 +    417917 CACGATGCGGGGCACAAACTCACAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022237 27 - 149150640 CACGATGCGGGGCGCAGACTCACAGGG
i rheMac8.chrX                 C 0 I 484
s macFas5.chr7                 171701788 27 - 171882078 CACGATGCGGGGCGCAAACTCACAGGG
i macFas5.chr7                 C 0 I 7
s cerAty1.NW_012001098v1          123358 27 -   1025902 CACGATGCGGGGCGCAAACTCACAGGG
i cerAty1.NW_012001098v1       C 0 I 7
s chlSab2.chrUn_KE147541v1        109460 27 -    811265 CACGATGTGGGGCGCAAACTCACAGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27472 27 -    350446 CACGATGCGGGGCGCAAATTCACAGAG
i manLeu1.NW_012108508v1       T 128 C 0
s colAng1.NW_012115411v1          189610 27 +   1230721 CACCACGCAGGGCGCAAACTCACAGGG
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=30004.000000
s hg38.chrX_KI270880v1_alt         58926 10 +    284869 CAGAGGTGCC
s panTro5.chrX                    180395 10 + 155549662 CAGAGGTGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127956 10 +    417917 CAGAGGTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115282 10 + 149150640 CAGAGGCGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701822 10 - 171882078 CAGAGGCGAC
i macFas5.chr7                 I 7 C 0
s cerAty1.NW_012001098v1          123392 10 -   1025902 CAGAGGTGCC
i cerAty1.NW_012001098v1       I 7 C 0
s chlSab2.chrUn_KE147541v1        109487 10 -    811265 CAGAGGCGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27499 10 -    350446 CAGAGGTGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189637 10 +   1230721 CAGAGGCGCC
i colAng1.NW_012115411v1       C 0 I 48
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=25392.000000
s hg38.chrX_KI270880v1_alt         58936 8 +    284869 GCCCAGTC
s panTro5.chrX                    180405 8 + 155549662 GCCCAGTA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127966 8 +    417917 GCCCAGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115292 8 + 149150640 GCCCAGTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701832 8 - 171882078 ACCCAGTC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123402 8 -   1025902 GCCCAGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109497 8 -    811265 GCCCAGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27509 8 -    350446 GCCCAGTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189695 8 +   1230721 GCCCAGTC
i colAng1.NW_012115411v1       I 48 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e saiBol1.JH378345                140497 0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=21775.000000
s hg38.chrX_KI270880v1_alt         58944 7 +    284869 ACCCACG
s panTro5.chrX                    180413 7 + 155549662 ACCCATG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          127974 7 +    417917 ACCCACG
i gorGor5.CYUI01015925v1       C 0 I 228
s rheMac8.chrX                    115300 7 + 149150640 CCCCACG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701840 7 - 171882078 CCCCACG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123410 7 -   1025902 CCCCACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109505 7 -    811265 CCCCACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27517 7 -    350446 CCCCACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189703 7 +   1230721 CGCCACG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                140497 7 +    465904 ACCCATG
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=16019.000000
s hg38.chrX_KI270880v1_alt         58951 5 +    284869 ATGTG
s panTro5.chrX                    180420 5 + 155549662 ACGTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128209 5 +    417917 ATGCG
i gorGor5.CYUI01015925v1       I 228 C 0
s rheMac8.chrX                    115307 5 + 149150640 ATGCG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701847 5 - 171882078 ATGCG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123417 5 -   1025902 AAGCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109512 5 -    811265 ATGCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27524 5 -    350446 ATGCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189710 5 +   1230721 ATGCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                140504 5 +    465904 ATGTG
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e cebCap1.NW_016107987v1          211760 455 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=45574.000000
s hg38.chrX_KI270880v1_alt         58956 10 +    284869 GGGCGCAAAC
s panTro5.chrX                    180425 10 + 155549662 GGGCGCAAAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128214 10 +    417917 GGGCGCAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115312 10 + 149150640 GGGCGCAGAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701852 10 - 171882078 GGGCGCAAAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123422 10 -   1025902 GGGCGCAAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109517 10 -    811265 GGGCACAAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27529 10 -    350446 GGGCGCAAAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          189715 10 +   1230721 GGGCGCAAAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                140509  9 +    465904 -GCCACAAAC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          212215 10 -    735872 GGGCACAAAC
i cebCap1.NW_016107987v1       I 455 C 0
e calJac3.chrY                     45468 525 +   2853901 I
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=45143.000000
s hg38.chrX_KI270880v1_alt         58966 10 +    284869 TCACAGGGCA
s panTro5.chrX                    180435 10 + 155549662 TCACAGGGCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128224 10 +    417917 TCACAGGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115322 10 + 149150640 TCACAGAGCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701862 10 - 171882078 TCACAGAGCA
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123432 10 -   1025902 TCACAGAGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109527  9 -    811265 TCAC-AGGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           27539 10 -    350446 TCACAAGGCA
i manLeu1.NW_012108508v1       C 0 M 4755
s colAng1.NW_012115411v1          189725 10 +   1230721 TCACAGGCCA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     45993 10 +   2853901 TCACAGGGCA
i calJac3.chrY                 I 525 C 0
s saiBol1.JH378345                140518 10 +    465904 TCACAGGGCG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          212225 10 -    735872 TCACAGGGTA
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=128711.000000
s hg38.chrX_KI270880v1_alt         58976 31 +    284869 GAGGTGCCGCCCCTTCAGTTCATATCAGCAC
s panTro5.chrX                    180445 31 + 155549662 GAGGTGCCGCCCCTTCAGTTCAGATCAGCAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128234 31 +    417917 GAGGTGCCGCCCTTTCAGTTCAGATCAGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115332 31 + 149150640 GAGGTGCCGCCCGTTGAGTTCAGACCAGCAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701872 31 - 171882078 GAGGTGCCGCCCGTTGAGTTCAGACCAGCAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123442 31 -   1025902 GAGGTGCCGCCCGTTGAGTTCAGACCAGCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109536 31 -    811265 GAGGTGCCGCCCCTTGAGTTCAGACCAGCAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189735 31 +   1230721 GAGGTGCCGCGGCTTGAGTTCAGACCAGCAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46003 31 +   2853901 CAGCTGCCGCCCGTTGAATTCAGACCGGCAC
i calJac3.chrY                 C 0 I 24
s saiBol1.JH378345                140528 31 +    465904 CAGGTGCCGCCCCTGGAATTCAGACCAGCAC
i saiBol1.JH378345             C 0 I 48
s cebCap1.NW_016107987v1          212235 31 -    735872 CAGGTGCCGCCCCTTGAATTCAGACCAGCAC
i cebCap1.NW_016107987v1       C 0 I 130
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=170550.000000
s hg38.chrX_KI270880v1_alt         59007 53 +    284869 TACACACGGACGGCCTCCCAAACGCAGCTAGGGGAACCAGATTGGGAGCCAAC
s panTro5.chrX                    180476 53 + 155549662 TACACACGGACGGCCTCCCAAACGCAGCTAGGGGAACCAGATTGGGTGCCAAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128265 52 +    417917 TACACACGGACGGCCTCCCAAACGCAGCTA-GGGAACCAGATTGGGAGCCAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115363 53 + 149150640 CACACACGGACGGCCTCCCAAACGCAGCTGGGGGAACCAGATTAGGAGCCAAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701903 53 - 171882078 CACACACGGACGGCCTCCCAAACGCAGCTGGGGGAACCAGATTAGGAGCCAAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123473 53 -   1025902 CACACACGGACGGCCTCCCAAACGCAGCTGGGGGAACCAGATTAGGAGCCAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109567 53 -    811265 CACACACGGACGGCCTCCCAAACGCAGCTGGGGGAACCAGATTAGGAGCCAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189766 53 +   1230721 CACACACGGACGGCCTCCCAAACGCAGCTAGGGGAACCAGATTAGCAGCCAAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46058 53 +   2853901 CACAGGCAGGCGGCCTTCCAAACACCGCTGGTGAAACGTGATTAGAGGCCAGC
i calJac3.chrY                 I 24 C 0
s saiBol1.JH378345                140607 52 +    465904 CACGTGCAGACAGCCTTCCAAACACAGCGGGTGCAACCTGGTTAGACGCCGA-
i saiBol1.JH378345             I 48 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          212266 130 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=204259.000000
s hg38.chrX_KI270880v1_alt         59060 49 +    284869 CTCCTGTGATCTCCCTCCGAAAGTCAAAGATCAAACCCAAAATGCGGGG
s panTro5.chrX                    180529 49 + 155549662 CTCCTGTGATCTCCCTCCGAAAGTCAAAGATCAAACCCAAAATGCGCGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128317 49 +    417917 CTCCTGTGATCTCCCTCCGAAAGTCAAAGATCAAACCCAAAATGCAGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115416 49 + 149150640 CTCCTACGATCTCCCTCCGAAAGTCAAAGATCAAACCCGAAATGCGGGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171701956 49 - 171882078 CTCCTGCGATCTCCCTCCCAAAGTCAAAGATCAAACCCGAAATGCGGGG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123526 49 -   1025902 CTCCTGCGATCTCCCTCCCAAAGTCAAAGATCAAACCCGAAATGCGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109620 49 -    811265 CTCCTGCGATCTCCCTCCCAAAGTCAAAGATCAAACCCGAAATGCGGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189819 49 +   1230721 CTCCTGTGATCTCCCTCCCAAAGTCAAAGATCAAGCCCAAAATGTGGGA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46111 49 +   2853901 CTCCTGTGATCTCCCTCCAAAAATCGAAGATCAAAACCAAAATGTGGGT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                140659 36 +    465904 -------------CCTCTGAAAATTAAAGATCAAACCCAAAATGCAGGG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          212396 49 -    735872 CTCCTGTGATCTCCCTCTGAAAATCAAAGATCAAACCCAAAATGCAGGG
i cebCap1.NW_016107987v1       I 130 I 874
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=153140.000000
s hg38.chrX_KI270880v1_alt         59109 51 +    284869 GAAGCGAGCCAACG--GGCGCGATCCTCACACTCAGGCAACATGCCCTGTCCT
s panTro5.chrX                    180578 53 + 155549662 GAAGTGAGCCAACGGAGGTGCGATCCTCACACTCAGGCAACACGCCCTGTCCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128366 53 +    417917 GAAGCGAGCCAAGGGAGGCGCGATCCTAACACTCAGGCAACACGCCCTGTCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115465 53 + 149150640 GCAGCCAGCCCATGGAGGTGCGATCCTCACGCTCAGGCCACGCGCCCCGTCCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702005 53 - 171882078 GCAGCCAGCCCATGGAGGTGCGATCCTCACGCTCAGGCCACGCGCCCCGTCCT
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123575 51 -   1025902 GAAGCCAGCCGATGGAGGTGCGATCCTCACGCTCAGGCCACACG--CCGTCCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109669 53 -    811265 GAAGCCAGCCGATGGAGGTGCGATCCTCACGCTCAGGCCACACGCCCCGTCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189868 53 +   1230721 GAAGCCAGCCGATGGAGGTGCGATCCTCACGCTCAGGCAACACGCCCTGTCCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46160 53 +   2853901 AAAGTGACACGACTGAGGCGTGCTCCTCACACTCGGGCAACACACCCCGTCCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                140695 53 +    465904 AACGCGAGACGACCGAGCTGGGCTCCTCACACTCAGGCAACACACCCCGTCCT
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          212445 874 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=34528.000000
s hg38.chrX_KI270880v1_alt         59160 8 +    284869 GCCACGCC
s panTro5.chrX                    180631 8 + 155549662 GCCACGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128419 7 +    417917 GCCA-GCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115518 8 + 149150640 GTCACGCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702058 8 - 171882078 GTCACGCC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123626 8 -   1025902 GCCACGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109722 8 -    811265 GCCACGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189921 8 +   1230721 GCCACGCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46213 8 +   2853901 GCCACGCC
i calJac3.chrY                 C 0 I 230
s saiBol1.JH378345                140748 8 +    465904 GCCACGCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          213319 8 -    735872 GCCACACC
i cebCap1.NW_016107987v1       I 874 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=14133.000000
s hg38.chrX_KI270880v1_alt         59168 3 +    284869 AGG
s panTro5.chrX                    180639 3 + 155549662 GGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128426 3 +    417917 GGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115526 3 + 149150640 GGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702066 3 - 171882078 GGG
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123634 3 -   1025902 GGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109730 3 -    811265 GGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189929 3 +   1230721 GGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46451 3 +   2853901 GGG
i calJac3.chrY                 I 230 C 0
s saiBol1.JH378345                140756 3 +    465904 GGG
i saiBol1.JH378345             C 0 I 648
s cebCap1.NW_016107987v1          213327 3 -    735872 AGG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=30075.000000
s hg38.chrX_KI270880v1_alt         59171 26 +    284869 TGACACACGCCCTGTCCTGCCACGGC
s panTro5.chrX                    180642 26 + 155549662 TGACACACACCCTGTCCTGCCACGGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128429 26 +    417917 TGACACACGCCCTGTCCTGCCACGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115529  9 + 149150640 TGACACACG-----------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702069  9 - 171882078 TGACACACG-----------------
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123637  9 -   1025902 TGACACACG-----------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109733  9 -    811265 TGACACACG-----------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189932  9 +   1230721 TGACACACG-----------------
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46454 26 +   2853901 TGACACGCACCCTGTCCTGTCACGTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                141407 26 +    465904 TGACACATGCCCTCTCCTGCCATGCC
i saiBol1.JH378345             I 648 I 434
s cebCap1.NW_016107987v1          213330 26 -    735872 TGACATGCGCCCCATCCTGTCACGCG
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=243249.000000
s hg38.chrX_KI270880v1_alt         59197 65 +    284869 GGGTGACACACACCCCTGTGGACTTTACTGCCAGGTTTCCTCTTTCCGTACAAGACTTTTGGAAC
s panTro5.chrX                    180668 65 + 155549662 GGGTGACACACACCCCTGCGGACTTTACTGCCAGGTTTCCTCTTTCCGTACAAGACTTTTGGAAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128455 65 +    417917 GGGTGACACACACCCCTGCGGACTTTACTGCCAGGTTTCCTCTTTCCGTACAAGACTTTTGGAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115538 53 + 149150640 ------------CCCCTGCGGACTTTACTGCCACGTTTCCTCTTTCCGTACAAGGCTTTTGGAAC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702078 53 - 171882078 ------------CCCCTGCGGACTTTACTGCCACGTTTCCTCTTTCCGTACAAGGCTTTTGGAAC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123646 53 -   1025902 ------------CCCCTACGGACTTTACTGCCACGTTTCCCCTTTCCGTACAAGGTTTTTGGAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109742 53 -    811265 ------------CCCCTGCGGACTTTACTGCCACGTTTCCTCTTTCCGTACAAGGCTGTTGGAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189941 53 +   1230721 ------------CCCCTGCGGACTTTACTGCCACGTTTCCTCTTTCCGTACAAGACTTTTGGAAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46480 65 +   2853901 GGGTGACACACACCCCTGTGGACTCTACTGCCATGGCTGCTCTTCCCGTACAAGACTTTTGGAAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                141867 65 +    465904 GGGTGACACACACCCCTGTGGACACGACTGCCATGCCTCCTCTTTCCGTACACGCCTTTTGGAAC
i saiBol1.JH378345             I 434 C 0
s cebCap1.NW_016107987v1          213356 65 -    735872 GGGTGACACACACCCCTGTGGACTCTACTGCCATGCTTCCTCTTTCCGTACAAGACTTCTGGAAC
i cebCap1.NW_016107987v1       C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=6876.000000
s hg38.chrX_KI270880v1_alt         59262 2 +    284869 AC
s panTro5.chrX                    180733 2 + 155549662 AC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128520 2 +    417917 AC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115591 2 + 149150640 AC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702131 2 - 171882078 AC
i macFas5.chr7                 C 0 C 0
s cerAty1.NW_012001098v1          123699 2 -   1025902 AC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109795 2 -    811265 AC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189994 2 +   1230721 AC
i colAng1.NW_012115411v1       C 0 C 0
s cebCap1.NW_016107987v1          213421 2 -    735872 AC
i cebCap1.NW_016107987v1       C 0 I 220
e calJac3.chrY                     46545 0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e saiBol1.JH378345                141932 0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=297004.000000
s hg38.chrX_KI270880v1_alt         59264 135 +    284869 Agcca--------ggcacagtggctcatgcctgtaatcccagcactttgggaggtcaaggcaggcagatca--tgaggtcaggagttcgagaccagccaggccaacatggtgaaaccctgtctctactaaaaatac-aaaattagc
s panTro5.chrX                    180735 135 + 155549662 Agcca--------ggcacggtggctcatgcctgtaatcccagcactttgggaggtcaaggcaggcagatca--tgaggtcaggagttcgagaccagccaggccaacatggtgaaaccctgtctctactaaaaatac-aaaattagc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128522 135 +    417917 Agcca--------ggcacagtggctcatgcctgtaatcccagcactttgggaggtcaaggcaggcagatca--tgaggtcaggagttcgagatcagccaggccaacatggtgaaaccctgtctctactaaaaatac-aaaattagc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115593 138 + 149150640 ggccg--------ggcgcggtggctcacgcctgtcatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcaagaccagcccggccaacacggtgaaaccccgtctctactaaaaatacaaaaattagc
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171702133 137 - 171882078 ggccg--------ggcgcggtggctcacgcctgtcatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctact-aaaatacaaaaattagc
i macFas5.chr7                 C 0 I 120
s cerAty1.NW_012001098v1          123701 137 -   1025902 ggccg--------ggcacagtgactcacgcctgtcatcccagcactttgggaggccgaggcgggcggatcacctgacgtcgggagttcaagaccagcctggccaacacggtgaaaccccgtctctactaaaaatac-aaaattagc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109797 145 -    811265 GGCCGGGCACAGTggcacagtggctcacgcctgtcatcccagcactctgggaggccgaggtgggcggatcacctgacgtcgggagttcgagaccagcctggccaacacggtgaaaccccgtctctactaaaaatac-aaaattagc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          189996 137 +   1230721 ggctg--------ggcacagtggctcacgcctgtcatcccagcactttgggaggccgaggcgggcggatcagctcacgtcagaagttcaagaccagcctggccaacatgctgaaacgccgtctgtactaaaagtac-aaaattagc
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     46545   0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                141932   0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=88973.000000
s hg38.chrX_KI270880v1_alt         59399 59 +    284869 tgggcatggtggcgggtgcctgtcatcccagctacttgggaggctgagggagaagaatc
s panTro5.chrX                    180870 59 + 155549662 tgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgagggagaagaatc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128657 59 +    417917 tgggcatggtggcgggtgcctgtaatcccagctacttgggaggctgagggagaagaatc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                    115731 59 + 149150640 caggtgtagtggcgggcacctgtagtcccagctgcctgggaggctgaggcaggagaatc
i rheMac8.chrX                 C 0 n 0
s cerAty1.NW_012001098v1          123838 59 -   1025902 ggggcgtggtggcgggcacctgtcatcccagtaactccagaggctgaggcaggagaatg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        109942 59 -    811265 tgggcgtggtggcgggcgcccgtcatcccagtaactccagaggctgaggcaggagaatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          190133 59 +   1230721 tgggtgtggtggcgggcgcctgtaatcccagtaactccagaggctgaggcaggagaatc
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     46545  0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                141932  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=97961.000000
s hg38.chrX_KI270880v1_alt         59458 93 +    284869 gcttgaactcagaaggcagaggttgcagtgagccgagattgcgccactgcactgcagcctgggggacaagagcgagacttcgtctc--aaaaagg
s panTro5.chrX                    180929 93 + 155549662 gcttgaactcagaaggcagaggttgcagtgagccgagatcgtgccactgcactgcagcctgggggacaagagcgagacttcgtctc--aaaaagg
i panTro5.chrX                 C 0 I 8
s gorGor5.CYUI01015925v1          128716 92 +    417917 gcttgaactcggaaggcagaggttgcagtgagccaagatcgtgccactgcactgcagcct-ggggacaagagcgagacttcgtctc--aaaaagg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          123897 86 -   1025902 gcttgaactcaggaggcggaggttgcagtgagccgagatcccgccattgcactccagcctgggggacaagagagaaacttcgtctt---------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        110001 86 -    811265 gcttgaactcaggaggcggaggttgccgtgagccgagatcccgccatggcactccagcctgggggacaagagacagacttcgtctt---------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          190192 88 +   1230721 gcttgaactcaggaggcggaggttgcagtgagccgagatcccgccattgcactccagcctgggggacgagagagagacttcgtcttaa-------
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     46545  0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                141932  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          169579 960 +  25972781 M
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=47634.000000
s hg38.chrX_KI270880v1_alt         59551 28 +    284869 aaaaaaaaaaaaaaaagaCTTTTGGAA--A
s panTro5.chrX                    181030 28 + 155549662 aaaaaaaaaaaaaaaAGACTTTTGGAA--A
i panTro5.chrX                 I 8 C 0
s gorGor5.CYUI01015925v1          128808 28 +    417917 aaaaaaaaaaaaaaaagaCTTTTGGAA--A
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170558 30 +  25972781 AAAAAAAAAAAAAAAAGACTTTTGGAACCC
i macNem1.NW_012017243v1       M 960 C 0
s cerAty1.NW_012001098v1          123983 28 -   1025902 aaaaaaaaaaaaaaaagaCTTTTGGAA--C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        110087 28 -    811265 aaaaaaaaaaaaaaaagaCTTTCGGAA--C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          190280 28 +   1230721 aaaaaaaaaaaaaaaagaCTTCTGGAA--C
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     46545  0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                141932  0 +    465904 C
e otoGar3.GL873584                105601 695 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=165840.000000
s hg38.chrX_KI270880v1_alt         59579 67 +    284869 ACAGCCTCAAAATCCTGAAGTGCACACATAGGCAGAGATTT--AGACTCTGACCTGGAGCCCTCGAACC
s panTro5.chrX                    181058 69 + 155549662 ACAGCCTCAAAATCCTGAAGTGCACACACACACAGAGATTTAAAGACTCTGACCTGGAGCCCTCAAACC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128836 65 +    417917 ACAACCTCAAAATCCTGACGTGCACACACA--CAGAGATTT--AGACTCTGACCTGGAGCCCTCAAACC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170588 69 +  25972781 ACAGCCTCAAAATCCTGAAGTGCACACATACACAGAGGTTTAACGACTCTGACCTGGAGTCCTCAAACC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124011 67 -   1025902 ACAGCCTCAAAATTCTGAAGTGCACACATACACAGAGGTTTAAAGA--CTGACCTGGAGCCCTCAAACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        110115 69 -    811265 ACAGCCTCAACATCCTGAAGTGCACACAAACACAGAGATTTAAAGACTCTGACCTGGAGCCCTCAAACC
i chlSab2.chrUn_KE147541v1     C 0 I 5593
s colAng1.NW_012115411v1          190308 69 +   1230721 ACAGCCTCAAAATCCTGAAGTGCACACATACACACAGATTTAAAGACTCTGACCTGGAGCCCTCAAACC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46545 67 +   2853901 ATGGCCTGAAAATCCTCAAGTGCACGCATA--CAGAGACGTAAAGACTCTCACCTGGAATCCTCAAAGC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                141932 69 +    465904 ACGGCCTGAAAATCCTGAAATGCACACATACCCAGAGACGTCGAGACTCTCATCCAGAGTCCTCAAAGC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=164011.000000
s hg38.chrX_KI270880v1_alt         59646 112 +    284869 ACCTCTGGATGCAG-TCCCACTGCCCCCCTGGAGCCCTTGCGTCCT-----GTCCCGAT------GCAGAACCCGCACCACCCGCC---------CCCAGTGCAGCCACAGGGCTGTCTACACCGGATGGGGG
s panTro5.chrX                    181127 112 + 155549662 ACCTCTGGATGCAG-CCCCACTGCCTCCCTGGAGCCCCTACGTCCT-----GTCCCGAT------GCAGAACCCGCACCACCCGCC---------CCCAATGCAGCCACAGGGCTGTCTACACCAGATGGGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          128901 111 +    417917 ACCTCTGGATGCAG-CCCCACTGCCTCCCTGGAGCCC-TGCGTCCT-----GTCCCGAT------GCAGAACCCGCATCACCCGCC---------CCCAGTGCAGCCACAGGGCTGTCTACACCGGATGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170657 122 +  25972781 CCCTCCCGATGCAGCCCCCACCGCCTCCCTGGAACCCGTACGTCCG-----GGCTGGAT------GCAGAACCTGCACCACTCACCCCCAGTGCTCCCAGTGCTGCCAGGGGGCTGTCTACATGGGATGGGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124078 113 -   1025902 ACGTCCAGATGCAGCCCCCACCGCCTCCCTGGAACCCCTACGTCCC-----GTCCCGAT------GCAGAACCTGCACCACTCACC---------CCCAGTGCAGCCAGGGGGCTGTCTACATGGGATGGGGG
i cerAty1.NW_012001098v1       C 0 I 6
s colAng1.NW_012115411v1          190377 112 +   1230721 ACCTCCAGGTGCAGCCCCCGCTGCCTCCCTGGAACCCCTACGTCCT-----GTCCC-AT------GCAGAACCTGCACCGCTCACC---------CCCAGTGCAGCCACGGGGCTGTCTACATGGGATGGGGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46612 119 +   2853901 ACCTCCAGAGGCAG-CCCCACTGCGTCCCTGC-ACTTCCACGGCCTGCCCCGCACCCGCTTCCCGACGCAGCCACAGA--CCCGCT---------CCCGATGCAGCCACAGGGCCGTCTACGTGGGAGGGGG-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142001 109 +    465904 ACCTCCAGATGCAG-CCCCACTGCATCCCTGTGGCTTCCACGGCCT-----GCACCCGC------GCAGAACCCGCAC--CCCCTT---------CCCGACGCAGCCACAGGGCCGTCCACACACATCGGGG-
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2826.000000
s hg38.chrX_KI270880v1_alt         59758 5 +    284869 AG-GGA
s panTro5.chrX                    181239 5 + 155549662 AG-GGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129012 5 +    417917 AG-GGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170779 5 +  25972781 AG-CGG
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1          190489 5 +   1230721 AG-GGA
i colAng1.NW_012115411v1       C 0 I 23
s calJac3.chrY                     46731 5 +   2853901 AG-GCA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142110 6 +    465904 TGCGGA
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124191 6 -   1025902 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2255.000000
s hg38.chrX_KI270880v1_alt         59763 2 +    284869 CA
s panTro5.chrX                    181244 2 + 155549662 CA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129017 2 +    417917 CA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170784 2 +  25972781 CA
i macNem1.NW_012017243v1       C 0 I 17
s calJac3.chrY                     46736 2 +   2853901 CA
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142116 2 +    465904 CG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124191 6 -   1025902 I
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=15347.000000
s hg38.chrX_KI270880v1_alt         59765 19 +    284869 GGGCTGTCCACACTCGACA
s panTro5.chrX                    181246 19 + 155549662 GGGCTGTTCACACTCGACG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129019 19 +    417917 GGGCTTTCCACACTCGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124197 19 -   1025902 GGGCCGTCCACACCCGGCA
i cerAty1.NW_012001098v1       I 6 C 0
s calJac3.chrY                     46738 19 +   2853901 GGGCCATCCACACACATCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142118 19 +    465904 GCACCACGCACACTCAACA
i saiBol1.JH378345             C 0 I 18
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1380.000000
s hg38.chrX_KI270880v1_alt         59784 3 +    284869 GAG
s panTro5.chrX                    181265 3 + 155549662 GAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129038 3 +    417917 GAG
i gorGor5.CYUI01015925v1       C 0 C 0
s calJac3.chrY                     46757 3 +   2853901 GGG
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142137 18 +    465904 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124216 0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=900.000000
s hg38.chrX_KI270880v1_alt         59787 3 +    284869 CCC
s panTro5.chrX                    181268 3 + 155549662 CCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129041 3 +    417917 CCC
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     46760 0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142137 18 +    465904 I
e otoGar3.GL873584                105601 695 +  11138919 I
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124216 0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=291.000000
s hg38.chrX_KI270880v1_alt         59790 3 +    284869 CCA
s gorGor5.CYUI01015925v1          129044 3 +    417917 CCA
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     46760 0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142137 18 +    465904 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124216 0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1473.000000
s hg38.chrX_KI270880v1_alt         59793 5 +    284869 TGGGG
s gorGor5.CYUI01015925v1          129047 5 +    417917 TGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s calJac3.chrY                     46760 5 +   2853901 TGGGG
i calJac3.chrY                 C 0 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142137 18 +    465904 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124216 0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1132.000000
s hg38.chrX_KI270880v1_alt         59798 38 +    284869 CCATCCACTACCGTGT-ACAGGGACGGGCCGTCCACAGT
s calJac3.chrY                     46765 32 +   2853901 ----ACAGCACCGTGCGGTCTCAACAGGGCCGCCAC---
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142155 38 +    465904 CTCTACGCCACCATGT-ATGGGGACAGGGCTGTCACGGT
i saiBol1.JH378345             I 18 C 0
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e chlSab2.chrUn_KE147541v1        110184 5593 -    811265 I
e cerAty1.NW_012001098v1          124216  0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          170786 17 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-1080.000000
s hg38.chrX_KI270880v1_alt         59836 1 +    284869 -G
s macNem1.NW_012017243v1          170803 1 +  25972781 -G
i macNem1.NW_012017243v1       I 17 C 0
s chlSab2.chrUn_KE147541v1        115777 1 -    811265 -G
i chlSab2.chrUn_KE147541v1     I 5593 C 0
s saiBol1.JH378345                142193 1 +    465904 T-
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     46797 0 +   2853901 C
e manLeu1.NW_012108508v1           27549 4755 -    350446 M
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e cerAty1.NW_012001098v1          124216 0 -   1025902 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052 0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=39019.000000
s hg38.chrX_KI270880v1_alt         59837 36 +    284869 GGGCCGCCATGGGGCTGTCTATACACTACTGTATGC
s macNem1.NW_012017243v1          170804 36 +  25972781 GGGCCACCACAGGGCTCTCTATCCACTACTGTGTAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124216 36 -   1025902 GGGCTGCCACGGGGCTCTCTATCCACTACTGTGTAC
i cerAty1.NW_012001098v1       C 0 T 61
s chlSab2.chrUn_KE147541v1        115778 36 -    811265 GGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32374 36 -    350446 GGGCTGCCACGGGGCTATCTATCCACTACCGTGTAC
i manLeu1.NW_012108508v1       M 4755 C 0
s calJac3.chrY                     46797 25 +   2853901 -----------GGGGAGTCTATGCACTATCATGTAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142194 29 +    465904 -------GACAGGGCCGTGTCTTCACTACCGTGTAC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=7338.000000
s hg38.chrX_KI270880v1_alt         59873 6 +    284869 AGGGAC
s macNem1.NW_012017243v1          170840 6 +  25972781 GGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124191 6 -   1025902 AGGGAC
i cerAty1.NW_012001098v1       T 61 C 0
s chlSab2.chrUn_KE147541v1        115814 6 -    811265 AGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32410 6 -    350446 AGGGAT
i manLeu1.NW_012108508v1       C 0 T 61
s calJac3.chrY                     46822 6 +   2853901 AGGGCC
i calJac3.chrY                 C 0 I 1
s saiBol1.JH378345                142223 6 +    465904 ACAGAC
i saiBol1.JH378345             C 0 I 1
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052 0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt         59879 1 +    284869 G
s macNem1.NW_012017243v1          170846 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 T 61
s cerAty1.NW_012001098v1          124197 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115820 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32355 1 -    350446 G
i manLeu1.NW_012108508v1       T 61 C 0
s calJac3.chrY                     46829 1 +   2853901 G
i calJac3.chrY                 I 1 C 0
s saiBol1.JH378345                142230 1 +    465904 G
i saiBol1.JH378345             I 1 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052 0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=7614.000000
s hg38.chrX_KI270880v1_alt         59880 4 +    284869 GGCC
s macNem1.NW_012017243v1          170786 4 +  25972781 GGCC
i macNem1.NW_012017243v1       T 61 C 0
s cerAty1.NW_012001098v1          124198 4 -   1025902 GGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115821 4 -    811265 GGCC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32356 4 -    350446 GGCC
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     46830 4 +   2853901 GGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142231 4 +    465904 GGCC
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052 0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=47807.000000
s hg38.chrX_KI270880v1_alt         59884 34 +    284869 GTCCACACCCAGTGGGGCCGCCATGGGGCTGTCT
s macNem1.NW_012017243v1          170790 34 +  25972781 GTCCGCACCCCGCGGGGCCACCACAGGGCTCTCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124202 34 -   1025902 GTCCACACCCGGCAGGGCTGCCACGGGGCTCTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115764 34 -    811265 GTCCACACCCGGCGGGGCCGCCACGGGGCTCTCT
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32360 34 -    350446 GTCCACACCCGGCAGGGCTGCCACGGGGCTATCT
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     46834 34 +   2853901 GTCCACGGTGGACGGGGCTGCCACGGGGCTGTGT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142235 34 +    465904 GTCCACGCTCGGCAGGGCTGTCACAGAGCTGTTT
i saiBol1.JH378345             C 0 T 132
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=51318.000000
s hg38.chrX_KI270880v1_alt         59918 47 +    284869 ATACACTACTGTATGCAGGGAC-GGGCCGTCCACACCCAGTGGGGCCG
s macNem1.NW_012017243v1          170824 47 +  25972781 ATCCACTACTGTGTACGGGGAC-GGGCCGTCCACACCCAGTGGGGCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124236 47 -   1025902 ATCCACTACTGTGTACAGGGAT-GGGCCGTTCACACCCGGTGGGGCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115798 47 -    811265 ATCCACTACCGTGTGCAGGGAC-GGGCCGTCCACACCCGGCGGGGCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32394 47 -    350446 ATCCACTACCGTGTACAGGGAT-GGGCCGTCCACACCCGGCAGGGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     46868 48 +   2853901 ATTCACTACCGTGTACACAGACGGGGCTGTCCACACTCAACAGGGCCG
i calJac3.chrY                 C 0 T 156
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=28750.000000
s hg38.chrX_KI270880v1_alt         59965 39 +    284869 CCATGGGGCTGTCTATACACTACTGTATGCAGGGACGGG
s macNem1.NW_012017243v1          170871 39 +  25972781 CCATGCGGCTGTCTATACACGACTGTGTGCAGGGATGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124283 39 -   1025902 CCATGCGGCTGACTATACACGACTGTGTGCAGGGACCGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115845 39 -    811265 CCATGCGGCTGTGTATACACGACTGTGTGCAGGGACCGG
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32441 39 -    350446 CCACGGGGCTATCTATCCACTACTGTGTGCAGGGATGGG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2000.000000
s hg38.chrX_KI270880v1_alt         60004 2 +    284869 CC
s macNem1.NW_012017243v1          170910 2 +  25972781 CC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124322 2 -   1025902 CC
i cerAty1.NW_012001098v1       C 0 T 122
s chlSab2.chrUn_KE147541v1        115823 2 -    811265 CC
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32480 2 -    350446 CC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052 0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=37635.000000
s hg38.chrX_KI270880v1_alt         60006 64 +    284869 ATCCACACCCAGTGGGGCCACCATGGGGCTGTCTATACACTACTGTGTACAGGGAC-GGGCCGTC
s macNem1.NW_012017243v1          170912 65 +  25972781 GTCCACACCCCGCAGGGCCACCACGGGGCTGTCTATCCACTACTGTGTACGGGGATGGGGCCGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124202 64 -   1025902 GTCCACACCCGGCAGGGCTGCCACGGGGCTCTCTATCCACTACTGTGTACAGGGAT-GGGCCGTT
i cerAty1.NW_012001098v1       T 122 C 0
s chlSab2.chrUn_KE147541v1        115825 64 -    811265 GTCCACACCCGGCGGGGCCGCCATGCGGCTGTGTATACACGACTGTGTGCAGGGAC-CGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32482 51 -    350446 GTCCACACCCAGTGGGGCC-------------GTATACATGACTGTGTGCAGGGAC-AGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=24361.000000
s hg38.chrX_KI270880v1_alt         60070 29 +    284869 CACACCCAGTGGGGCCACCATGGGGCTGT
s macNem1.NW_012017243v1          170977 29 +  25972781 CACACCCGGTGGGGCCACCATGCGGCTGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124266 29 -   1025902 CACACCCGGTGGGGCCGCCATGCGGCTGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115828 29 -    811265 CACACCCGGCGGGGCCGCCATGCGGCTGT
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32533 29 -    350446 CACACCCGGTGGGGCCACCATGCGGCTGA
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129052  0 +    417917 C
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=32879.000000
s hg38.chrX_KI270880v1_alt         60099 27 +    284869 CTATACACTACTGTGTACAGGGACGGG
s gorGor5.CYUI01015925v1          129052 27 +    417917 CTATACACTACTGTGTGCAGGGACGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171006 27 +  25972781 CTATACACGACCGTGTGCAGGGACCGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124295 27 -   1025902 CTATACACGACTGTGTGCAGGGACCGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115857 27 -    811265 GTATACACGACTGTGTGCAGGGACCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32562 27 -    350446 CTATACACGACTGTGTGCAGGGACGGG
i manLeu1.NW_012108508v1       C 0 T 234
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=4910.000000
s hg38.chrX_KI270880v1_alt         60126 5 +    284869 CCGTC
s gorGor5.CYUI01015925v1          129079 5 +    417917 CCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171033 5 +  25972781 CCGTC
i macNem1.NW_012017243v1       C 0 T 61
s cerAty1.NW_012001098v1          124322 5 -   1025902 CCGTC
i cerAty1.NW_012001098v1       C 0 T 136
s chlSab2.chrUn_KE147541v1        115884 5 -    811265 CCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=13055.000000
s hg38.chrX_KI270880v1_alt         60131 57 +    284869 ----CACAGTGGGGCCGCCATGGGGCTGTCTATACACTACTGTATACAGGGACGGGCCGTC
s gorGor5.CYUI01015925v1          129084 57 +    417917 ----TACAGTGGGGCCGCCATGGGGCTGTCTATACACTACTGTGTACAGGGACGGGCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170977 61 +  25972781 CACACCCGGTGGGGCCACCATGCGGCTGTCTATACACGACCGTGTGCAGGGACCGGCCGTC
i macNem1.NW_012017243v1       T 61 T 235
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=573.000000
s hg38.chrX_KI270880v1_alt         60188 6 +    284869 CACAGT
s gorGor5.CYUI01015925v1          129141 6 +    417917 CACAGT
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 235 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=11335.000000
s hg38.chrX_KI270880v1_alt         60194 27 +    284869 GGGGCCGCCATGGGGCTGTCTATACAC
s gorGor5.CYUI01015925v1          129147 25 +    417917 GGGGCCGCCACGGGGCTGTCTAT--AC
i gorGor5.CYUI01015925v1       C 0 I 136
s macNem1.NW_012017243v1          170803 27 +  25972781 GGGGCCACCACAGGGCTCTCTATCCAC
i macNem1.NW_012017243v1       T 235 C 0
s chlSab2.chrUn_KE147541v1        115777 27 -    811265 GGGGCCGCCACGGGGCTCTCTATCCAC
i chlSab2.chrUn_KE147541v1     T 112 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2097.000000
s hg38.chrX_KI270880v1_alt         60221 10 +    284869 TACTGTATGC
s macNem1.NW_012017243v1          170830 10 +  25972781 TACTGTGTAC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115804 10 -    811265 TACCGTGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129172 136 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3126.000000
s hg38.chrX_KI270880v1_alt         60231 6 +    284869 AGGGAC
s macNem1.NW_012017243v1          170840 6 +  25972781 GGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124191 6 -   1025902 AGGGAC
i cerAty1.NW_012001098v1       T 136 C 0
s chlSab2.chrUn_KE147541v1        115814 6 -    811265 AGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 234 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129172 136 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1000.000000
s hg38.chrX_KI270880v1_alt         60237 1 +    284869 G
s macNem1.NW_012017243v1          170846 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 T 61
s cerAty1.NW_012001098v1          124197 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115820 1 -    811265 G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32355 1 -    350446 G
i manLeu1.NW_012108508v1       T 234 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129172 136 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2000.000000
s hg38.chrX_KI270880v1_alt         60238 2 +    284869 GG
s macNem1.NW_012017243v1          170786 2 +  25972781 GG
i macNem1.NW_012017243v1       T 61 C 0
s cerAty1.NW_012001098v1          124198 2 -   1025902 GG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115821 2 -    811265 GG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32356 2 -    350446 GG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129172 136 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3000.000000
s hg38.chrX_KI270880v1_alt         60240 2 +    284869 CC
s gorGor5.CYUI01015925v1          129308 2 +    417917 CC
i gorGor5.CYUI01015925v1       I 136 C 0
s macNem1.NW_012017243v1          170788 2 +  25972781 CC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124200 2 -   1025902 CC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115823 2 -    811265 CC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32358 2 -    350446 CC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=55458.000000
s hg38.chrX_KI270880v1_alt         60242 50 +    284869 GTCCACACCCAGTGGGGCCGCCATGGGGCTGTCTATACACTACTGTATGC
s gorGor5.CYUI01015925v1          129310 49 +    417917 ATCCACACCCAGTGGGGCCGCCAC-GGGCTGTCTATACACTACTGTGTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170790 50 +  25972781 GTCCGCACCCCGCGGGGCCACCACAGGGCTCTCTATCCACTACTGTGTAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124202 50 -   1025902 GTCCACACCCGGCAGGGCTGCCACGGGGCTCTCTATCCACTACTGTGTAC
i cerAty1.NW_012001098v1       C 0 T 61
s chlSab2.chrUn_KE147541v1        115764 50 -    811265 GTCCACACCCGGCGGGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGC
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32360 50 -    350446 GTCCACACCCGGCAGGGCTGCCACGGGGCTATCTATCCACTACCGTGTAC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=14965.000000
s hg38.chrX_KI270880v1_alt         60292 11 +    284869 AGGGACGGGCC
s gorGor5.CYUI01015925v1          129359 11 +    417917 AGGGACGGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170840 11 +  25972781 GGGGACGGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124191 11 -   1025902 AGGGACGGGCC
i cerAty1.NW_012001098v1       T 61 C 0
s chlSab2.chrUn_KE147541v1        115814 11 -    811265 AGGGACGGGCC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32410 11 -    350446 AGGGATGGGCC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=56267.000000
s hg38.chrX_KI270880v1_alt         60303 50 +    284869 GTCCACACCCAGTGGGGCCGCCATGGGGCTGTCTATACACTACTGTATGC
s gorGor5.CYUI01015925v1          129370 50 +    417917 ATCCACACCCAGTGGGGCCGCCATGGGGCTGTCTATACTCTACTGTGTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170851 50 +  25972781 GTCCACACCCAGTGGGGCCACCATGCGGCTGTCTATACACGACTGTGTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124202 50 -   1025902 GTCCACACCCGGCAGGGCTGCCACGGGGCTCTCTATCCACTACTGTGTAC
i cerAty1.NW_012001098v1       C 0 T 61
s chlSab2.chrUn_KE147541v1        115764 50 -    811265 GTCCACACCCGGCGGGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGC
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32421 50 -    350446 GTCCACACCCGGCAGGGCTGCCACGGGGCTATCTATCCACTACTGTGTGC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=9024.000000
s hg38.chrX_KI270880v1_alt         60353 7 +    284869 AGGGACG
s gorGor5.CYUI01015925v1          129420 7 +    417917 AGGGATG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170901 7 +  25972781 AGGGATG
i macNem1.NW_012017243v1       C 0 T 122
s cerAty1.NW_012001098v1          124191 7 -   1025902 AGGGACG
i cerAty1.NW_012001098v1       T 61 C 0
s chlSab2.chrUn_KE147541v1        115814 7 -    811265 AGGGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32471 7 -    350446 AGGGATG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=17830.000000
s hg38.chrX_KI270880v1_alt         60360 13 +    284869 GGCCGTCCACACC
s gorGor5.CYUI01015925v1          129427 13 +    417917 GGCCGTCCACACT
i gorGor5.CYUI01015925v1       C 0 T 388
s macNem1.NW_012017243v1          170786 13 +  25972781 GGCCGTCCGCACC
i macNem1.NW_012017243v1       T 122 C 0
s cerAty1.NW_012001098v1          124198 13 -   1025902 GGCCGTCCACACC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115821 13 -    811265 GGCCGTCCACACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32478 13 -    350446 GGCCGTCCACACC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=31213.000000
s hg38.chrX_KI270880v1_alt         60373 55 +    284869 CAGTGGGGCCGCCATGGGGCTGTCTATACACTACTGTGTACAGGGACGGGCCGTC
s macNem1.NW_012017243v1          170799 55 +  25972781 CCGCGGGGCCACCACAGGGCTCTCTATCCACTACTGTGTACGGGGACGGGCCGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124211 55 -   1025902 CGGCAGGGCTGCCACGGGGCTCTCTATCCACTACTGTGTACAGGGATGGGCCGTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115834 55 -    811265 CGGCGGGGCCGCCATGCGGCTGTGTATACACGACTGTGTGCAGGGACCGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32491 42 -    350446 CAGTGGGGCC-------------GTATACATGACTGTGTGCAGGGACAGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129440 388 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=24090.000000
s hg38.chrX_KI270880v1_alt         60428 29 +    284869 CACACCCAGTGGGGCCACCATGGGGCTGT
s macNem1.NW_012017243v1          170854 29 +  25972781 CACACCCAGTGGGGCCACCATGCGGCTGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124266 29 -   1025902 CACACCCGGTGGGGCCGCCATGCGGCTGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115828 29 -    811265 CACACCCGGCGGGGCCGCCATGCGGCTGT
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32533 29 -    350446 CACACCCGGTGGGGCCACCATGCGGCTGA
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129440 388 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=33059.000000
s hg38.chrX_KI270880v1_alt         60457 27 +    284869 CTATACACTACTGTATGCAGGGACGGG
s gorGor5.CYUI01015925v1          129052 27 +    417917 CTATACACTACTGTGTGCAGGGACGGG
i gorGor5.CYUI01015925v1       T 388 C 0
s macNem1.NW_012017243v1          170883 27 +  25972781 CTATACACGACTGTGTGCAGGGATGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124295 27 -   1025902 CTATACACGACTGTGTGCAGGGACCGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115857 27 -    811265 GTATACACGACTGTGTGCAGGGACCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32562 27 -    350446 CTATACACGACTGTGTGCAGGGACGGG
i manLeu1.NW_012108508v1       C 0 T 215
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=4910.000000
s hg38.chrX_KI270880v1_alt         60484 5 +    284869 CCGTC
s gorGor5.CYUI01015925v1          129079 5 +    417917 CCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170910 5 +  25972781 CCGTC
i macNem1.NW_012017243v1       C 0 I 4
s cerAty1.NW_012001098v1          124322 5 -   1025902 CCGTC
i cerAty1.NW_012001098v1       C 0 T 118
s chlSab2.chrUn_KE147541v1        115884 5 -    811265 CCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 215 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=885.000000
s hg38.chrX_KI270880v1_alt         60489 6 +    284869 CACAGT
s gorGor5.CYUI01015925v1          129084 6 +    417917 TACAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170919 6 +  25972781 CCCCGC
i macNem1.NW_012017243v1       I 4 C 0
s cerAty1.NW_012001098v1          124209 6 -   1025902 CCCGGC
i cerAty1.NW_012001098v1       T 118 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 215 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=205.000000
s hg38.chrX_KI270880v1_alt         60495 1 +    284869 G
s gorGor5.CYUI01015925v1          129090 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170925 1 +  25972781 A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124215 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115777 1 -    811265 G
i chlSab2.chrUn_KE147541v1     T 112 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32589 215 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=42507.000000
s hg38.chrX_KI270880v1_alt         60496 35 +    284869 GGGCCGCCATGGGGCTGTCTATACACTACTGTGTA
s gorGor5.CYUI01015925v1          129091 35 +    417917 GGGCCGCCATGGGGCTGTCTATACACTACTGTGTA
i gorGor5.CYUI01015925v1       C 0 I 55
s macNem1.NW_012017243v1          170926 35 +  25972781 GGGCCACCACGGGGCTGTCTATCCACTACTGTGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124216 35 -   1025902 GGGCTGCCACGGGGCTCTCTATCCACTACTGTGTA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115778 35 -    811265 GGGCCGCCACGGGGCTCTCTATCCACTACCGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32374 35 -    350446 GGGCTGCCACGGGGCTATCTATCCACTACCGTGTA
i manLeu1.NW_012108508v1       T 215 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=66159.000000
s hg38.chrX_KI270880v1_alt         60531 62 +    284869 CAGGGAC-GGGCCGTCCACACCCAGTGGGGCCACCATGGGGCTGTCTATACACTACTGTATGC
s gorGor5.CYUI01015925v1          129181 61 +    417917 CAGGGAC-GGGCCATCCACACCCAGTGGG-CCACCACGGGGCTGTCTATACTCTACTGTGTAC
i gorGor5.CYUI01015925v1       I 55 C 0
s macNem1.NW_012017243v1          170961 63 +  25972781 CGGGGATGGGGCCGTCCACACCCGGTGGGGCCACCATGCGGCTGTCTATACACGACCGTGTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124251 62 -   1025902 CAGGGAT-GGGCCGTTCACACCCGGTGGGGCCGCCATGCGGCTGACTATACACGACTGTGTGC
i cerAty1.NW_012001098v1       C 0 T 122
s chlSab2.chrUn_KE147541v1        115813 62 -    811265 CAGGGAC-GGGCCGTCCACACCCGGCGGGGCCGCCATGCGGCTGTGTATACACGACTGTGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32409 62 -    350446 CAGGGAT-GGGCCGTCCACACCCGGCAGGGCTGCCACGGGGCTATCTATCCACTACTGTGTGC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=18140.000000
s hg38.chrX_KI270880v1_alt         60593 14 +    284869 AGGGACGGGCCGTC
s gorGor5.CYUI01015925v1          129242 14 +    417917 AGGGACGGGCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171024 14 +  25972781 AGGGACCGGCCGTC
i macNem1.NW_012017243v1       C 0 T 119
s cerAty1.NW_012001098v1          124191 14 -   1025902 AGGGACGGGCCGTC
i cerAty1.NW_012001098v1       T 122 I 4
s chlSab2.chrUn_KE147541v1        115875 14 -    811265 AGGGACCGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
s manLeu1.NW_012108508v1           32471 14 -    350446 AGGGATGGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1402.000000
s hg38.chrX_KI270880v1_alt         60607 4 +    284869 CACA
s gorGor5.CYUI01015925v1          129256 4 +    417917 CACA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170919 4 +  25972781 CCCC
i macNem1.NW_012017243v1       T 119 C 0
s cerAty1.NW_012001098v1          124209 4 -   1025902 CCCG
i cerAty1.NW_012001098v1       I 4 C 0
s manLeu1.NW_012108508v1           32485 4 -    350446 CACA
i manLeu1.NW_012108508v1       C 0 T 115
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=667.000000
s hg38.chrX_KI270880v1_alt         60611 2 +    284869 GT
s gorGor5.CYUI01015925v1          129260 2 +    417917 GT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170923 2 +  25972781 GC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124213 2 -   1025902 GC
i cerAty1.NW_012001098v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=205.000000
s hg38.chrX_KI270880v1_alt         60613 1 +    284869 G
s gorGor5.CYUI01015925v1          129262 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170925 1 +  25972781 A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124215 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115777 1 -    811265 G
i chlSab2.chrUn_KE147541v1     T 112 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=83602.000000
s hg38.chrX_KI270880v1_alt         60614 75 +    284869 GGGCCGCCATGGGGCTGTCTATACACTACTGTGTACAGGGAC-GGGCCGTCCACACCCAGTGGGGCCGCCATGGGG
s gorGor5.CYUI01015925v1          129263 74 +    417917 GGGCCGCCACGGGGCTGTCTATAGTCTACTGTCTACAGGGAC-GGGCCATCCACACCCAGTGGGGCCGCCAC-GGG
i gorGor5.CYUI01015925v1       C 0 T 211
s macNem1.NW_012017243v1          170926 76 +  25972781 GGGCCACCACGGGGCTGTCTATCCACTACTGTGTACGGGGATGGGGCCGTCCACACCCGGTGGGGCCACCATGCGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124216 75 -   1025902 GGGCTGCCACGGGGCTCTCTATCCACTACTGTGTACAGGGAT-GGGCCGTTCACACCCGGTGGGGCCGCCATGCGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115778 75 -    811265 GGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGCAGGGAC-GGGCCGTCCACACCCGGCGGGGCCGCCATGCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32374 75 -    350446 GGGCTGCCACGGGGCTATCTATCCACTACCGTGTACAGGGAT-GGGCCGTCCACACCCGGCAGGGCTGCCACGGGG
i manLeu1.NW_012108508v1       T 115 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=14605.000000
s hg38.chrX_KI270880v1_alt         60689 21 +    284869 CTGTCTATACACTACTGTATG
s macNem1.NW_012017243v1          171002 21 +  25972781 CTGTCTATACACGACCGTGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124291 21 -   1025902 CTGACTATACACGACTGTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115853 21 -    811265 CTGTGTATACACGACTGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32449 21 -    350446 CTATCTATCCACTACTGTGTG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129337 211 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=19415.000000
s hg38.chrX_KI270880v1_alt         60710 15 +    284869 CAGGGACGGGCCGTC
s gorGor5.CYUI01015925v1          129126 15 +    417917 CAGGGACGGGCCGTC
i gorGor5.CYUI01015925v1       T 211 C 0
s macNem1.NW_012017243v1          171023 15 +  25972781 CAGGGACCGGCCGTC
i macNem1.NW_012017243v1       C 0 T 228
s cerAty1.NW_012001098v1          124312 15 -   1025902 CAGGGACCGGCCGTC
i cerAty1.NW_012001098v1       C 0 T 122
s chlSab2.chrUn_KE147541v1        115874 15 -    811265 CAGGGACCGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
s manLeu1.NW_012108508v1           32470 15 -    350446 CAGGGATGGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2292.000000
s hg38.chrX_KI270880v1_alt         60725 4 +    284869 CACA
s gorGor5.CYUI01015925v1          129141 4 +    417917 CACA
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124205 4 -   1025902 CACA
i cerAty1.NW_012001098v1       T 122 I 4
s manLeu1.NW_012108508v1           32485 4 -    350446 CACA
i manLeu1.NW_012108508v1       C 0 T 115
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 228 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=329.000000
s hg38.chrX_KI270880v1_alt         60729 2 +    284869 GT
s gorGor5.CYUI01015925v1          129145 2 +    417917 GT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124213 2 -   1025902 GC
i cerAty1.NW_012001098v1       I 4 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 228 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=207.000000
s hg38.chrX_KI270880v1_alt         60731 1 +    284869 G
s gorGor5.CYUI01015925v1          129147 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124215 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115777 1 -    811265 G
i chlSab2.chrUn_KE147541v1     T 112 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 228 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=5205.000000
s hg38.chrX_KI270880v1_alt         60732 6 +    284869 GGGCCG
s gorGor5.CYUI01015925v1          129148 6 +    417917 GGGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124216 6 -   1025902 GGGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115778 6 -    811265 GGGCCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32374 6 -    350446 GGGCTG
i manLeu1.NW_012108508v1       T 115 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 228 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=99675.000000
s hg38.chrX_KI270880v1_alt         60738 91 +    284869 CCATGGGGCTGTCTATACACTACTGTGTACAGGGACGGGCCGTCCACACCCAGTGGGGCCACCATGGGGCTGTCTATACACTACTGTGTAC
s gorGor5.CYUI01015925v1          129154 88 +    417917 CCACGGGGCTGTCTATAC--TACTGTCTACAGGGACGGGCCATCCACACCCAGTGGG-CCACCACGGGGCTGTCTATACTCTACTGTGTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170810 91 +  25972781 CCACAGGGCTCTCTATCCACTACTGTGTACGGGGACGGGCCGTCCACACCCAGTGGGGCCACCATGCGGCTGTCTATACACGACTGTGTGC
i macNem1.NW_012017243v1       T 228 C 0
s cerAty1.NW_012001098v1          124222 91 -   1025902 CCACGGGGCTCTCTATCCACTACTGTGTACAGGGATGGGCCGTTCACACCCGGTGGGGCCGCCATGCGGCTGACTATACACGACTGTGTGC
i cerAty1.NW_012001098v1       C 0 T 122
s chlSab2.chrUn_KE147541v1        115784 91 -    811265 CCACGGGGCTCTCTATCCACTACCGTGTGCAGGGACGGGCCGTCCACACCCGGCGGGGCCGCCATGCGGCTGTGTATACACGACTGTGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32380 91 -    350446 CCACGGGGCTATCTATCCACTACCGTGTACAGGGATGGGCCGTCCACACCCGGCAGGGCTGCCACGGGGCTATCTATCCACTACTGTGTGC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=18413.000000
s hg38.chrX_KI270880v1_alt         60829 14 +    284869 AGGGACGGGCCGTC
s gorGor5.CYUI01015925v1          129242 14 +    417917 AGGGACGGGCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170901 14 +  25972781 AGGGATGGGCCGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124191 14 -   1025902 AGGGACGGGCCGTC
i cerAty1.NW_012001098v1       T 122 C 0
s chlSab2.chrUn_KE147541v1        115875 14 -    811265 AGGGACCGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
s manLeu1.NW_012108508v1           32471 14 -    350446 AGGGATGGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3820.000000
s hg38.chrX_KI270880v1_alt         60843 4 +    284869 CACA
s gorGor5.CYUI01015925v1          129256 4 +    417917 CACA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170915 4 +  25972781 CACA
i macNem1.NW_012017243v1       C 0 I 4
s cerAty1.NW_012001098v1          124205 4 -   1025902 CACA
i cerAty1.NW_012001098v1       C 0 I 4
s manLeu1.NW_012108508v1           32485 4 -    350446 CACA
i manLeu1.NW_012108508v1       C 0 T 115
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=667.000000
s hg38.chrX_KI270880v1_alt         60847 2 +    284869 GT
s gorGor5.CYUI01015925v1          129260 2 +    417917 GT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170923 2 +  25972781 GC
i macNem1.NW_012017243v1       I 4 C 0
s cerAty1.NW_012001098v1          124213 2 -   1025902 GC
i cerAty1.NW_012001098v1       I 4 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=205.000000
s hg38.chrX_KI270880v1_alt         60849 1 +    284869 G
s gorGor5.CYUI01015925v1          129262 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170925 1 +  25972781 A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124215 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115777 1 -    811265 G
i chlSab2.chrUn_KE147541v1     T 112 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e manLeu1.NW_012108508v1           32489 115 -    350446 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=49503.000000
s hg38.chrX_KI270880v1_alt         60850 43 +    284869 GGGCCGCCATGGGGCTGTCTATACACTACTGTGTACAGGGACG
s gorGor5.CYUI01015925v1          129263 43 +    417917 GGGCCGCCACGGGGCTGTCTATAGTCTACTGTCTACAGGGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170926 43 +  25972781 GGGCCACCACGGGGCTGTCTATCCACTACTGTGTACGGGGATG
i macNem1.NW_012017243v1       C 0 T 183
s cerAty1.NW_012001098v1          124216 43 -   1025902 GGGCTGCCACGGGGCTCTCTATCCACTACTGTGTACAGGGATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115778 43 -    811265 GGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGCAGGGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32374 43 -    350446 GGGCTGCCACGGGGCTATCTATCCACTACCGTGTACAGGGATG
i manLeu1.NW_012108508v1       T 115 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=32863.000000
s hg38.chrX_KI270880v1_alt         60893 28 +    284869 GGCCGTCCACACCCAGTGGGGCCACCAT
s gorGor5.CYUI01015925v1          129306 28 +    417917 GGCCATCCACACCCAGTGGGGCCGCCAC
i gorGor5.CYUI01015925v1       C 0 I 122
s macNem1.NW_012017243v1          170786 28 +  25972781 GGCCGTCCGCACCCCGCGGGGCCACCAC
i macNem1.NW_012017243v1       T 183 C 0
s cerAty1.NW_012001098v1          124259 28 -   1025902 GGCCGTTCACACCCGGTGGGGCCGCCAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115821 28 -    811265 GGCCGTCCACACCCGGCGGGGCCGCCAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32417 28 -    350446 GGCCGTCCACACCCGGCAGGGCTGCCAC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=19916.000000
s hg38.chrX_KI270880v1_alt         60921 40 +    284869 GGGGCTGTCTATACACTACTGTGTACAGGGACGGGCCGTC
s macNem1.NW_012017243v1          170814 25 +  25972781 AGGGCTCTCTATCCACTACTGTGTA---------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124287 40 -   1025902 GCGGCTGACTATACACGACTGTGTGCAGGGACCGGCCGTC
i cerAty1.NW_012001098v1       C 0 T 136
s chlSab2.chrUn_KE147541v1        115849 40 -    811265 GCGGCTGTGTATACACGACTGTGTGCAGGGACCGGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 112
s manLeu1.NW_012108508v1           32445 40 -    350446 GGGGCTATCTATCCACTACTGTGTGCAGGGATGGGCCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=251.000000
s hg38.chrX_KI270880v1_alt         60961 4 +    284869 TACA
s manLeu1.NW_012108508v1           32485 4 -    350446 CACA
i manLeu1.NW_012108508v1       C 0 T 57
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170839 0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=69.000000
s hg38.chrX_KI270880v1_alt         60965 2 +    284869 GT
s manLeu1.NW_012108508v1           32432 2 -    350446 GC
i manLeu1.NW_012108508v1       T 57 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 112 -    811265 T
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          170839 0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=5546.000000
s hg38.chrX_KI270880v1_alt         60967 37 +    284869 GGGGCCGCCATGGGGCTGTCTATACACTACTGTATGC
s macNem1.NW_012017243v1          170839  1 +  25972781 ------------------------------------C
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115777 37 -    811265 GGGGCCGCCACGGGGCTCTCTATCCACTACCGTGTGC
i chlSab2.chrUn_KE147541v1     T 112 C 0
s manLeu1.NW_012108508v1           32434 37 -    350446 AGGGCTGCCACGGGGCTATCTATCCACTACTGTGTGC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e cerAty1.NW_012001098v1          124327 136 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=4808.000000
s hg38.chrX_KI270880v1_alt         61004 6 +    284869 AGGGAC
s macNem1.NW_012017243v1          170840 6 +  25972781 GGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124191 6 -   1025902 AGGGAC
i cerAty1.NW_012001098v1       T 136 C 0
s chlSab2.chrUn_KE147541v1        115814 6 -    811265 AGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32471 6 -    350446 AGGGAT
i manLeu1.NW_012108508v1       C 0 T 122
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=5000.000000
s hg38.chrX_KI270880v1_alt         61010 5 +    284869 GGGCC
s macNem1.NW_012017243v1          170846 5 +  25972781 GGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124197 5 -   1025902 GGGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115820 5 -    811265 GGGCC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32355 5 -    350446 GGGCC
i manLeu1.NW_012108508v1       T 122 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=16026.000000
s hg38.chrX_KI270880v1_alt         61015 20 +    284869 GTCCACACCCAGTGGGGCCG
s macNem1.NW_012017243v1          170851 20 +  25972781 GTCCACACCCAGTGGGGCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124202 20 -   1025902 GTCCACACCCGGCAGGGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115764 20 -    811265 GTCCACACCCGGCGGGGCCG
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32360 20 -    350446 GTCCACACCCGGCAGGGCTG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181271  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=109711.000000
s hg38.chrX_KI270880v1_alt         61035 100 +    284869 CCATGGGGCTGTCTATACACTACTGTGTACAGGGACGGG-CCGTCCACACCCAGTGGGGCCACCATGGGGCTGTCTATACACTACTGTGTACAGGGACGGG
s panTro5.chrX                    181271 101 + 155549662 CCACGGGGCTGTCTATCCACTACCGTGTACAGGGACGGGGCCGTCCACACTTGACAGGACCACCACGGGGCTGTTTATACACTACTGTGTACAGGGACGGG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1          170871 100 +  25972781 CCATGCGGCTGTCTATACACGACTGTGTGCAGGGATGGG-CCGTCCACACCCCGCAGGGCCACCACGGGGCTGTCTATCCACTACTGTGTACGGGGATGGG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1          124222 100 -   1025902 CCACGGGGCTCTCTATCCACTACTGTGTACAGGGATGGG-CCGTTCACACCCGGTGGGGCCGCCATGCGGCTGACTATACACGACTGTGTGCAGGGACCGG
i cerAty1.NW_012001098v1       C 0 T 61
s chlSab2.chrUn_KE147541v1        115784 100 -    811265 CCACGGGGCTCTCTATCCACTACCGTGTGCAGGGACGGG-CCGTCCACACCCGGCGGGGCCGCCATGCGGCTGTGTATACACGACTGTGTGCAGGGACCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32380 100 -    350446 CCACGGGGCTATCTATCCACTACCGTGTACAGGGATGGG-CCGTCCACACCCGGCAGGGCTGCCACGGGGCTATCTATCCACTACTGTGTGCAGGGATGGG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e colAng1.NW_012115411v1          190494  23 +   1230721 I
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=6710.000000
s hg38.chrX_KI270880v1_alt         61135 5 +    284869 CCGTC
s panTro5.chrX                    181372 5 + 155549662 CCGTC
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1          170972 5 +  25972781 CCGTC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1          124261 5 -   1025902 CCGTT
i cerAty1.NW_012001098v1       T 61 C 0
s chlSab2.chrUn_KE147541v1        115884 5 -    811265 CCGTC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32480 5 -    350446 CCGTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=21567.000000
s hg38.chrX_KI270880v1_alt         61140 17 +    284869 CACACCCAGTGGGGCCA
s panTro5.chrX                    181377 17 + 155549662 CATACCCAGTGGGGCCG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1          170977 17 +  25972781 CACACCCGGTGGGGCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124266 17 -   1025902 CACACCCGGTGGGGCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115828 17 -    811265 CACACCCGGCGGGGCCG
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32485 17 -    350446 CACACCCAGTGGGGCCG
i manLeu1.NW_012108508v1       C 0 T 61
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=6620.000000
s hg38.chrX_KI270880v1_alt         61157 5 +    284869 CCATG
s panTro5.chrX                    181394 5 + 155549662 CCATG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1          170994 5 +  25972781 CCATG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124283 5 -   1025902 CCATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115845 5 -    811265 CCATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32441 5 -    350446 CCACG
i manLeu1.NW_012108508v1       T 61 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129334 122 +    417917 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=39792.000000
s hg38.chrX_KI270880v1_alt         61162 36 +    284869 GGGCTGTCTATACACTACTGTATGCAGGGACGGGCC
s gorGor5.CYUI01015925v1          129456 36 +    417917 GGGCTGTCTATACACTACTGTGTACAGGGACGGGCC
i gorGor5.CYUI01015925v1       I 122 T 158
s macNem1.NW_012017243v1          170999 36 +  25972781 CGGCTGTCTATACACGACCGTGTGCAGGGACCGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124288 36 -   1025902 CGGCTGACTATACACGACTGTGTGCAGGGACCGGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115850 36 -    811265 CGGCTGTGTATACACGACTGTGTGCAGGGACCGGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32446 36 -    350446 GGGCTATCTATCCACTACTGTGTGCAGGGATGGGCC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=2910.000000
s hg38.chrX_KI270880v1_alt         61198 3 +    284869 GTC
s macNem1.NW_012017243v1          171035 3 +  25972781 GTC
i macNem1.NW_012017243v1       C 0 T 123
s cerAty1.NW_012001098v1          124324 3 -   1025902 GTC
i cerAty1.NW_012001098v1       C 0 T 122
s chlSab2.chrUn_KE147541v1        115886 3 -    811265 GTC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32482 3 -    350446 GTC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129492 158 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=11915.000000
s hg38.chrX_KI270880v1_alt         61201 17 +    284869 CACACCCAGTGGGTCCG
s macNem1.NW_012017243v1          170915 17 +  25972781 CACACCCCGCAGGGCCA
i macNem1.NW_012017243v1       T 123 C 0
s cerAty1.NW_012001098v1          124205 17 -   1025902 CACACCCGGCAGGGCTG
i cerAty1.NW_012001098v1       T 122 C 0
s chlSab2.chrUn_KE147541v1        115828 17 -    811265 CACACCCGGCGGGGCCG
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32485 17 -    350446 CACACCCAGTGGGGCCG
i manLeu1.NW_012108508v1       C 0 T 122
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129492 158 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3627.000000
s hg38.chrX_KI270880v1_alt         61218 5 +    284869 CCGTG
s macNem1.NW_012017243v1          170932 5 +  25972781 CCACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124222 5 -   1025902 CCACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115845 5 -    811265 CCATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32380 5 -    350446 CCACG
i manLeu1.NW_012108508v1       T 122 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129492 158 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=38933.000000
s hg38.chrX_KI270880v1_alt         61223 36 +    284869 GGGCTGTCTATACACTACTGTGTACAGGGAC-GGGCC
s gorGor5.CYUI01015925v1          129334 36 +    417917 GGGCTGTCTATACACTACTGTGTACAGGGAC-GGGCC
i gorGor5.CYUI01015925v1       T 158 C 0
s macNem1.NW_012017243v1          170937 37 +  25972781 GGGCTGTCTATCCACTACTGTGTACGGGGATGGGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124227 36 -   1025902 GGGCTCTCTATCCACTACTGTGTACAGGGAT-GGGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115850 36 -    811265 CGGCTGTGTATACACGACTGTGTGCAGGGAC-CGGCC
i chlSab2.chrUn_KE147541v1     C 0 T 61
s manLeu1.NW_012108508v1           32385 36 -    350446 GGGCTATCTATCCACTACCGTGTACAGGGAT-GGGCC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=13326.000000
s hg38.chrX_KI270880v1_alt         61259 11 +    284869 ATCCACACCCA
s gorGor5.CYUI01015925v1          129370 11 +    417917 ATCCACACCCA
i gorGor5.CYUI01015925v1       C 0 I 61
s macNem1.NW_012017243v1          170974 11 +  25972781 GTCCACACCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124263 11 -   1025902 GTTCACACCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115825 11 -    811265 GTCCACACCCG
i chlSab2.chrUn_KE147541v1     T 61 C 0
s manLeu1.NW_012108508v1           32421 11 -    350446 GTCCACACCCG
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1582.000000
s hg38.chrX_KI270880v1_alt         61270 3 +    284869 GTG
s gorGor5.CYUI01015925v1          129442 3 +    417917 ACA
i gorGor5.CYUI01015925v1       I 61 C 0
s macNem1.NW_012017243v1          170985 3 +  25972781 GTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124274 3 -   1025902 GTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115836 3 -    811265 GCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32432 3 -    350446 GCA
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e saiBol1.JH378345                142269 132 +    465904 T
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=15513.000000
s hg38.chrX_KI270880v1_alt         61273 9 +    284869 GGGCCACCA
s gorGor5.CYUI01015925v1          129445 9 +    417917 GGACCACCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170988 9 +  25972781 GGGCCACCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124277 9 -   1025902 GGGCCGCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115839 9 -    811265 GGGCCGCCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32435 9 -    350446 GGGCTGCCA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                142137 9 +    465904 GGGCCACCA
i saiBol1.JH378345             T 132 I 1
e calJac3.chrY                     46916 156 +   2853901 T
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=45106.000000
s hg38.chrX_KI270880v1_alt         61282 38 +    284869 TGGGGCTGTCTATACACTACTGTAT-GCAGGGACGGGCC
s gorGor5.CYUI01015925v1          129454 38 +    417917 CGGGGCTGTCTATACACTACTGTGT-ACAGGGACGGGCC
i gorGor5.CYUI01015925v1       C 0 T 111
s macNem1.NW_012017243v1          170997 38 +  25972781 TGCGGCTGTCTATACACGACCGTGT-GCAGGGACCGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124286 38 -   1025902 TGCGGCTGACTATACACGACTGTGT-GCAGGGACCGGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115848 38 -    811265 TGCGGCTGTGTATACACGACTGTGT-GCAGGGACCGGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32444 38 -    350446 CGGGGCTATCTATCCACTACTGTGT-GCAGGGATGGGCC
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     46760 31 +   2853901 TGGGG--------ACAGCACCGTGCGGTCTCAACAGGGC
i calJac3.chrY                 T 156 C 0
s saiBol1.JH378345                142147 37 +    465904 AGGGGA-GTCTCTACGCCACCATGT-ATGGGGACAGGGC
i saiBol1.JH378345             I 1 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-352.000000
s hg38.chrX_KI270880v1_alt         61320 3 +    284869 -GTC
s macNem1.NW_012017243v1          171035 3 +  25972781 -GTC
i macNem1.NW_012017243v1       C 0 T 53
s cerAty1.NW_012001098v1          124324 3 -   1025902 -GTC
i cerAty1.NW_012001098v1       C 0 T 5
s chlSab2.chrUn_KE147541v1        115886 3 -    811265 -GTC
i chlSab2.chrUn_KE147541v1     C 0 T 5
s manLeu1.NW_012108508v1           32482 3 -    350446 -GTC
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     46791 3 +   2853901 CGC-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142184 3 +    465904 TGT-
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129492 111 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-1144.000000
s hg38.chrX_KI270880v1_alt         61323 4 +    284869 TACA--
s manLeu1.NW_012108508v1           32485 4 -    350446 CACA--
i manLeu1.NW_012108508v1       C 0 I 111
s calJac3.chrY                     46794 3 +   2853901 --CAC-
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142187 4 +    465904 --CACG
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 5 -    811265 T
e cerAty1.NW_012001098v1          124327 5 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 53 +  25972781 T
e macFas5.chr7                 171702270 120 - 171882078 I
e gorGor5.CYUI01015925v1          129492 111 +    417917 T
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1146.000000
s hg38.chrX_KI270880v1_alt         61327 2 +    284869 GT
s gorGor5.CYUI01015925v1          129381 2 +    417917 GT
i gorGor5.CYUI01015925v1       T 111 C 0
s macNem1.NW_012017243v1          170985 2 +  25972781 GT
i macNem1.NW_012017243v1       T 53 C 0
s saiBol1.JH378345                142191 2 +    465904 GT
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     46797 0 +   2853901 C
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 5 -    811265 T
e cerAty1.NW_012001098v1          124327 5 -   1025902 T
e colAng1.NW_012115411v1          190494 23 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=35359.000000
s hg38.chrX_KI270880v1_alt         61329 51 +    284869 GGGGCCGCCATGGGGCTGTCTATACACTACTGTGTACAGGGAC-GGGCCGTC
s gorGor5.CYUI01015925v1          129383 51 +    417917 GGGGCCGCCATGGGGCTGTCTATACTCTACTGTGTACAGGGAT-GGGCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          170987 51 +  25972781 GGGGCCACCATGCGGCTGTCTATACACGACCGTGTGCAGGGAC-CGGCCGTC
i macNem1.NW_012017243v1       C 0 I 13
s colAng1.NW_012115411v1          190517 52 +   1230721 GGGGCCGCCACAGGGCTGTCTATCCATTACCGTGTACAGGGATGGGGCCGTT
i colAng1.NW_012115411v1       I 23 C 0
s calJac3.chrY                     46797 40 +   2853901 ------------GGGGAGTCTATGCACTATCATGTACAGGGCCAGGGTCGTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142193 45 +    465904 -------TGACAGGGCCGTGTCTTCACTACCGTGTACACAGACGGGGCCGTC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889  5 -    811265 T
e cerAty1.NW_012001098v1          124327  5 -   1025902 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=12818.000000
s hg38.chrX_KI270880v1_alt         61380 21 +    284869 CACACTTGACAGGACCACCAC
s gorGor5.CYUI01015925v1          129434 21 +    417917 CACACTTGACAGGACCACCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          190569 21 +   1230721 CACACCCGGCAGGGCCGCCAC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46837 21 +   2853901 CACGGTGGACGGGGCTGCCAC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142238 21 +    465904 CACGCTCGGCAGGGCTGTCAC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e otoGar3.GL873584                105601 695 +  11138919 I
e panTro5.chrX                    181399  0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889  5 -    811265 T
e cerAty1.NW_012001098v1          124327  5 -   1025902 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=294.000000
s hg38.chrX_KI270880v1_alt         61401 1 +    284869 A
s gorGor5.CYUI01015925v1          129455 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          190590 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46858 1 +   2853901 G
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142259 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                106296 1 +  11138919 A
i otoGar3.GL873584             I 695 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e panTro5.chrX                    181399 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        115889 5 -    811265 T
e cerAty1.NW_012001098v1          124327 5 -   1025902 T
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=8992.000000
s hg38.chrX_KI270880v1_alt         61402 5 +    284869 GGGCT
s panTro5.chrX                    181399 5 + 155549662 GGGCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129456 5 +    417917 GGGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          190591 5 +   1230721 GGGCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46859 5 +   2853901 GGGCT
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142260 5 +    465904 GAGCT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                106297 5 +  11138919 GAGCT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213423 220 -    735872 I
e chlSab2.chrUn_KE147541v1        115889 5 -    811265 T
e cerAty1.NW_012001098v1          124327 5 -   1025902 T
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=22408.000000
s hg38.chrX_KI270880v1_alt         61407 30 +    284869 GTCTATACACTACTGTGTACAGGGACGGGG
s panTro5.chrX                    181404 30 + 155549662 GTCTATACTCTACTGTGTGCAGGGACGGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129461 29 +    417917 GTCTATACACTACTGTGTACAGGGAC-GGG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          190596 30 +   1230721 GTCTATCCACGACTGTGTGCAGGGACGGGG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46864 30 +   2853901 GTGTATTCACTACCGTGTACACAGACGGGG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142265  2 +    465904 GT----------------------------
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          213643 30 -    735872 GTCTATACACTACCATATACAGGGACAGGG
i cebCap1.NW_016107987v1       I 220 C 0
s otoGar3.GL873584                106302 28 +  11138919 GGCTACACAGGGCA--GGACAGGAATAGAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e chlSab2.chrUn_KE147541v1        115889  5 -    811265 T
e cerAty1.NW_012001098v1          124327  5 -   1025902 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=13954.000000
s hg38.chrX_KI270880v1_alt         61437 5 +    284869 CCGTC
s panTro5.chrX                    181434 5 + 155549662 CCATC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129490 5 +    417917 CCATC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124322 5 -   1025902 CCGTC
i cerAty1.NW_012001098v1       T 5 C 0
s chlSab2.chrUn_KE147541v1        115884 5 -    811265 CCGTC
i chlSab2.chrUn_KE147541v1     T 5 C 0
s colAng1.NW_012115411v1          190626 5 +   1230721 CCATC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46894 5 +   2853901 CTGTC
i calJac3.chrY                 C 0 I 8
s cebCap1.NW_016107987v1          213673 5 -    735872 CCGTC
i cebCap1.NW_016107987v1       C 0 I 77
s otoGar3.GL873584                106330 5 +  11138919 CCATC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e saiBol1.JH378345                142267 0 +    465904 C
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=3089.000000
s hg38.chrX_KI270880v1_alt         61442 7 +    284869 ATAGCAT
s panTro5.chrX                    181439 7 + 155549662 ATAGCAT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129495 7 +    417917 ATAGCAT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124327 7 -   1025902 ACACACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115889 7 -    811265 ACAGAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          190631 7 +   1230721 ACAGAGT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46907 7 +   2853901 ACAGGGC
i calJac3.chrY                 I 8 C 0
e manLeu1.NW_012108508v1           32489 111 -    350446 I
e cebCap1.NW_016107987v1          213678 77 -    735872 I
e saiBol1.JH378345                142267 0 +    465904 C
e otoGar3.GL873584                106335 0 +  11138919 C
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=9158.000000
s hg38.chrX_KI270880v1_alt         61449 6 +    284869 TGTTTT
s panTro5.chrX                    181446 6 + 155549662 TGTTTT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129502 6 +    417917 TGTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          124334 6 -   1025902 TGTGTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115896 6 -    811265 TGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32600 6 -    350446 TGTGTG
i manLeu1.NW_012108508v1       I 111 C 0
s colAng1.NW_012115411v1          190638 6 +   1230721 TGTTTT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     46914 6 +   2853901 CGTTTC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142267 3 +    465904 --TTT-
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          213755 6 -    735872 TGTTTT
i cebCap1.NW_016107987v1       I 77 C 0
e otoGar3.GL873584                106335 0 +  11138919 C
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          171038 13 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1241927.000000
s hg38.chrX_KI270880v1_alt         61455 328 +    284869 TGCACCACAGGCCAGCACGGAATCTGCGAGGCCTGTTTTCA-GCCTG--TTCCCCCCAAATTCCTACTCTGAAGAGACAACATTGCCATCTGGGCCGATGAAGCCCCTCACGGCACCCGAATCTCCA-CCGTCCCTCTGCTGTCGGGACACA-----ATCTtaccatcaacctctaaaggctcctaaaatgcccagaagacctttatgcaaaattttcataaaaatctcttcacttttcattctc-----actaaacatacatttgttcagacggcttgttttaggataaaAATGTGTCTTCCATGAGCAAACATAATGGCTTT-----TCTGAAATCCCAGATTTG
s panTro5.chrX                    181452 327 + 155549662 TGCACCACAGGCCAGCACGGAATCTGCGAGGCCTGTTTTCA-GCCTG--TTCCCCCCAAATTCCTACTCTGAAGAGACAACATTGCCATCTGGGCCGATGAAGCCCCTCACGGCACCCGAATCTCCA-CCGTCCTTCTCCCGTCGGGACACA-----ATCgtaccatcaacctctaaaggctcctaaaatgcccagaagacctttatgcaaa-ttttcataaaaatctcttcacttttcattctc-----actaaacatacatttgttcagacagcttgttttaggataaaAATGTGTCTTCCATGAGCAAACATAACGGCTTT-----TCTGAAATCCTAGATTTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129508 326 +    417917 TGCACCACAGGCCAGCACGGAATCTGCGAGGCCTGTTTTCA-GCCTG--TTCCCCCCAAATTCCTACTCTGAAGAGACAACATCGCCATCTGGGCCGATGAAGCCCCTCACGGCACCCGAATCTCCA-CCGTCCTTCTCCCGTCGGGACACA-----ATCGGACCATCAACCTCTAAAGGCTCCTAAAATGCCCAGAAGA-CTTTATGCAAA-TTTTCATAAAAATCTCTTCACTTTTCATTCCC-----ACTAAACATACATTTGTTCAGACGGCTTGTTTTAGGATAAAAATGTGTCTTCCATGAGCAAACATAATGGCTTT-----TCTGAAATCCTAGATTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171051 332 +  25972781 TGCACCACAAGCCAGCGTGGAATCGGTGAGGCCTGTTTTCA-GCCTG--TGTCCCCCACACTCCTACGCTGACGAGACAGCACTGCCATCTGGGCCAAGGAAGGCCTTCACGGCACCCGAATCTCCA-CTGTCCTTCTCCCGTGCGGACACG-----ATCgtaccatcaacctct-aatgctcctaaaatgcccagaagacctttatgcaaaattttcgtaaaaatctcttcacttttcattctc-----GCTAAACACACATTTGTTCCGATGGCTTGTTTTAGAATAAAAATGTGTCTTCCATGGGCAAACACAAGGAAATCCTAGATGTAAAATCCTAGATGTA
i macNem1.NW_012017243v1       I 13 C 0
s cerAty1.NW_012001098v1          124340 327 -   1025902 TGCACCACAAGCCAGCCTGGAATCGGTGAGGCCTGTTTTCA-GCCTG--TGTCCCCCACAATCCTACGCTGACGAGACATCACTGCCATCTGGGCCAATGAAGGCCCTCACGGCACCCGAATCTCCA-CTGTCCTTCTCCCGTGGGGACACA-----ATCGTACCACCAACCTCT-AATGCTCCTAAAATGCCCAGAAGACCTTTATGCAAAATTTCCATACAAATCTCTTCACTTTTCATTCTC-----ACTAAACACACATTTGTTCCGATGGCTTGTTTTAGAATAAAAATGTGTCTTCCATGGGCAAACACAAGGGCTTT-----TGTGAAATCCTAGATGTA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        115902 327 -    811265 TGCACCACAGGCCAGCAGGGAATCGGTGAGGCCTGTTTTCA-GCCTG--TGTCCCCCACACTCCTACGCGGACGAGACAGCACTGCCATCTGGGCCGATGAAGGCCCTCACGGCACCCGAATCTCCA-CTGTCCTTCTCCCGTGGGGACACA-----ATCGTACCACCAACCTCT-AATGCTCCTAAAATGCCCAGAAGACCTTTATGCGAAATTTTCATACACATCTCTTCACTTTTCATTCTC-----ACTAAACACACATGTGTTCCGATGCCTTGTTTTAGAATAAAAATGTGTCTTCCATGGGCAAACACAAGGGCTTT-----TGTGAAGTCCTAGATGTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32606 327 -    350446 TGCACCACAGGCCAGCAGGGAGTCGGTGAGGCCTGTTTTCA-GCCTG--TGTCCCCCACAGTCCTACGCTGACGAGACAGCACTGCCATCTGGGCCAAGGAAGGCCCTCACGGCACCCGAATCTCCA-CTGTCCTTCTCCCGTGCGGACACA-----ATCgtaccatcaacctct-aatgctcctaaaatgcccagaagacctttatgcaaaattttcgtaaaaatctcttcacttttcattctc-----ACTAAACACACATTTGTTCCGATGGCTTGTTTTAGAATAAAAATGTGTCTTCCATGGGCAAACACAAGGGCTTT-----TGTGAAATCCTAGATGTA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          190644 327 +   1230721 TGCACCACAGGCCAGCCTGGAATCTGCGAGGCCTGTTTTCA-GCCTG--TTTCCCCCACACTCCTACGCTGATGAGACAGCATCGCCATCCGGGCCAACGAAGGCCCTCGGGGCACCCGAATCTCCA-CTGTCCTTCTCCCGTGGGGACACA-----ATCGCACCATCAACCTCT-AATGCTCCTAAAATGCCCAGAAGACCTTTATGCAAAATTTTCATAAAAATCGCTTCGCTTTTTATTCTC-----ACGAAACACACATTTGTTCCGACGGCTTGTTTTAGAATAAAAATATGTCTTCAATGAGCAAACATAAGGGCTTT-----TGTGAAATCCTAGATTTA
i colAng1.NW_012115411v1       C 0 I 330
s calJac3.chrY                     46920 308 +   2853901 TGCTCCACAGG-CAGCGTGGAATCCATGAGGCCT------------G--TCTCCCCCACACTGCTACGCGGATGACACAACGTTGACACCTGGGCCCATGAAGGCCCTCACGGCACCCGAATCTCCA-CT---CGCCTCTCATGGGGACACG-----ATCGCCCCCTTAGCCTCT-AAAACTCCCCAAATGCTCAGAAGACCTTTATGCAAAACGTTCACAAGCATCTCCTCCCTTTTCATTGTC-----ACTAAACACACATTTGTTCAGACCGTTTG----AGGATAACAATGTGTGTTCAGTGAGCACACGTAAGTGCTTC-----TGTGAAATCCTAGGTGTG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142270 311 +    465904 ---------GG-CAGCGTGGAATCCATGAGGCCTGTTTTCA-GCCCG--TTTCCCCGACACCCCTCCACGGATG--AGAACAGTGTCGCCTGGGCCGATGCAGGCCCTCACGGCGGCGGAGTCTCGA-CT---CTCCTGTCATGGGGACACC-----ATCGCACCATGAGCCTCT-GAGACTCCTCAAATGCCCGGAAGACCTTTATGC-AGATGCTCACACACATCGCTTCCCTTCTCATTCTC-----ACTAAACACACATTTGTTCAGACCGTTTGTTTTAGGATAAACATGTGTGCTCCGTGAGCACACGTCAGTGCTTC-----TGTGACATCCTAGGTCTG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          213761 322 -    735872 TGCACCACAGG-CAGCGTGGAATTCATGAGGCCTGTTGTCA-GCCCG--TTTCCCCCACACCCCTACATGGATGAGACAACATTGCCACCTGGGCCGATGAAGGCCCTCACGGCACCCGAATCTCCG-CT---CTCCTCTCATGGGGACACC-----ATCGCACCATGAGCCTGT-AAAACTCCTCCGATGCCCAGAAGACCTTTATGC-AAATGTTCACAGACATCTCTCCCCTTTTCATCCTC-----AGTAAACACACATGTGTTCAGACCGTTTGTTTTAGGATAAAAATGTGTGTTCAATGAGCACACGGAAGTGCTTC-----TGTGAAATCCTGGGTCTG
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                106335 302 +  11138919 -----TACAGAACAGCACAGAACCCAGGA--TCTGCTCTTATGCCTGTATTTCCCCCAAATTCTTCCGCTGCTGGGACAAAATTCCAATCT----TGACAGAGACATGGACGGCACCGGTGCCTCCATCTGCCCTCTGCTTGAGGGGACACAGAATTATTGCACGTTTGACCCCC-AA-ACTCCTAATTTGCCC---AGATCTTCATGAAAATTCTTCATAAAATTCTCTTCACCTTTCATCATCTTATAAATAAATATGCA----------------ATTTTAGG-TGAGAGTTTGTGTTGAAAGAGTAAACA-------TTT-----TGGAACATTCTGTGTTCA
i otoGar3.GL873584             C 0 C 0
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=434890.000000
s hg38.chrX_KI270880v1_alt         61783 107 +    284869 AAAGGCTTACGAAGGCGACCTGCCCTTTGTGAGAAAAAGTTTTTCTGAACATCCAAAGCTAAAAGCATAGCTAGTAACAGGCAAGCCTATGAGACAGGAAGATGGCC
s panTro5.chrX                    181779 107 + 155549662 AAAGGCTTACGAAGGCAACCTGCCCTTTGTGAGAAAATGTTTTTCTGAACATCCAAAGCTAAAAGCATAGCTAGTAACAGGCAAGCCCATGAGACAGGAAGATGGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129834 107 +    417917 AAAGGCTTACGAAGGCGACCTGCCCTTTGTGAGAAAATGTTTTTCTGAACATCCAAAGCTAAAAGCATAGCTAGTAACAGGCAAGCCCATGAGACAGGAAGATGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171383 107 +  25972781 AAACGCTTACCAAGGCAACCTCCTCTTTGTGAGAAAATGTTTTTCTGAACATCCAAAGCTAACAGCATAGCTAGAAACAGGCAAACCCGTGAGACATGAAGATGGCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124667 107 -   1025902 AAAGGCTTACGAAGGCAACCTCCCCTTTGTGAGAAAATGTTTTTCTGAACATCCAAAGCTAACAGCATAGCTAGAAACAGGCAAACCCGTGGGACATGAAGATGGCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116229 107 -    811265 AAAGGCTTACGAAGGCAACCTACGCTTTGTGAGAAAATGTTTTTCTGAACCTGCAAAGCTAACAGCATAGCTAGTAACAGGCAAACCCGTGGGACATGAAGATGGCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           32933 107 -    350446 AAAGGCTTACGAAGGCAACCTCCCCTTTGTGAGAAAATGTTTTTCTAAACATCCAAAGCTAACAGCATAGCTAGAAACAGGCAAACCTGTGGGACATGAAGATGGCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          191301 107 +   1230721 aaAGGCTTACGAAGGCAACCTCCCCTTTGTGAGAAAACGTTTTTCTGAACATCCAAAGCTAACAGCATAGCTAGTAACAAGCAAACCCGTGAGCCATGAAGATGGCT
i colAng1.NW_012115411v1       I 330 C 0
s calJac3.chrY                     47228  79 +   2853901 AAAGGCTCACGGTGGCGACCGAGCCTTTGTGAGAACATGTTTATCTCAACATCCAAAGC----------------------------CACGAGCCAGGAAGGAGGCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142581 107 +    465904 AAAGGCTCACGATGGCGACCTAGCCTTTGTCAGAACGTGTTTTTCTGAGCATCCGAAGCTAACAGCACAGCTCGTAACAGGCAAAAGCACGAGACAGCAGGACGACC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          214083 107 -    735872 AAAGGCTCACGACGGCGACCCAGCCTTTGTGAGAACGTGTTTTTCTGAACATCCAAAGCTAAAAGCACAGCTCGTAACACGCAAAGCCACGACACAGGAAGATGGCC
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                106637 105 +  11138919 AAAAGCTTACCATGGGGACCTA-CATTTGTGATCAAGTGTTT-TCTGAACCTCTGAACCTCCTGGCATGATCAGTAACAGATAAACCCATAAGGCAGGAAGAGGACC
i otoGar3.GL873584             C 0 I 1545
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=81022.000000
s hg38.chrX_KI270880v1_alt         61890 19 +    284869 CAGAAT-Cctgtcctcaccc
s panTro5.chrX                    181886 19 + 155549662 CAGAAT-CCTGTCCTCACCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129941 19 +    417917 CAGAAT-Cctgtcctcaccc
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171490 19 +  25972781 CAGAAT-TCTGTCCTCACCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124774 19 -   1025902 CAGAAT-TCTGTCCTCACCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116336 19 -    811265 CAGAAT-TCTGTCCTCACCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33040 19 -    350446 CAGAAT-TCTGTCCTCACCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          191408 19 +   1230721 CAGAAT-TCTGTCCTCACCC
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     47307 20 +   2853901 CAGAATGCCCGTCCTCACCC
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142688 20 +    465904 CAGAATTCCCGTCCTCACCC
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          214190 20 -    735872 CAGAATTCCCGTCCTCTCCC
i cebCap1.NW_016107987v1       C 0 C 0
e otoGar3.GL873584                106742 1545 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1844787.000000
s hg38.chrX_KI270880v1_alt         61909 474 +    284869 tgcaggtgccgtctgcagagc---acggcttcctccctgtttcaaaggccctgagaggacaggctccagcggattcaaaacccgtccacctcatctcaggaaacggcatggttctctctgtcaacagaagg----ggagggagggatgaagctctttac-acagtttccatggttgcagattctcggaggttgcaagaagggttttcgacaccttccttcctcctcacaacga---------gactctcatcggtgcccactat-gaaaacgtgaataggtcgttgttacgaagGCAGTGAGAACTGAACGCAGACAGGCACGCACCTG-TACAAAAGCTACAGTCCCTGGGCAAGCTCAAGGCTCCCGCAC-GAAACCTTCAGAAACCCTGAGCTCCTGCCCTGAGGG-TTCTAG--GTGCTTT--TGTCTTACAACATGTTTGTTAAGAACTTCTAATGAAACGTTAAGATAACC-ACACCTGTATGTACATGCACCT
s panTro5.chrX                    181905 474 + 155549662 TGCAGGCGCCGTCTGCAGAGC---ACAGCTTCCTCCCTGTTTCAAAGGCCCTGAGAGGACAGGCTCCAGCGGATTCAAAACCCGTCCACGTCATCTCAGGAAACGGCATGGTTCTTTCTGTCAACAGAAGG----GGAGGGAGGGATGAAGCTCTTTAC-ACAGTTTCCATGGTTGCAGATTCTTGGAGGTTCCAAGAAGGGTTCTGGACACCTTCCTTCCTCCTCACAACGA---------GACTCTCATCGGTGCCCACTAT-GAAAACGTGAATAGGTCGTTGTTACGAAGGCAGTGAGAACTGAACGCAGACAGGCACGCACCTG-TACAAAAGCTACAGTCCCTGGGCAAGCTCAGGGCTCCCGCAC-GAAACCTTCAGAAACCCTGAGCTCCTGCCCTGAGGG-TTCTGG--GTGCTTT--TGTCTTACAACATGTTTGTTAAGAACTTCTAATGAAACGTTAAGATAAGC-ACACCTGTATGTACATGCACCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          129960 473 +    417917 tgcaggcgccatctgcagagc---acggcttcctccctgtttcaaaggccctgagaggacaggctccagcggattcaaaacccgtccacctcatctcaggaaacggcatggttctctctgtcaacagaagg----ggagggagggatgAAGCTCTTTAC-ACAGTTTCCATGGTTGCAGATTCTCGGAGGTTCCAAGAAGGGTTCTCGACACCTTCCTTCCTCCTCACAACGA---------GACTCTCATCGGTGCCCACTAT-GAAAACGTGAATAGGTCGTTGTTACGAAGGCAGTGAGAACTGAACCCAGACAGGCACGCACCTG-TACAAAAGCTACAGTCCCTGGGCAAGCTCAGGGCTCCCGCAC-AAAACCTTCAGAAACCCTGAGCTCCTGCCCTGA-GG-TTCTGG--GTGCTTT--TGTCTTACAACATGTTTGTTAAGAACTTCTAATGAAACGTTAAGATAAGC-ACACCTGTATGTACATGCACCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171509 443 +  25972781 CACAGGTGCCGTCTGCGGAGT---GCGGCCTCCTCCCTGTTTCAAAGGCCCTGAGAGGATAGGCTCCGGCGGATTCAAAACCTGTCCACCTCATCTCAGGAAACGGCACGGTTCTCTCTGTCAACAAAAGA----GGAGGGAGGGACGAGGCTCTTTAC-ACAGCTTCCATGGTTGCAGATTCTCGAAGGTTACAAGAAGAGTTCTGAACACCTTCCTTCCTCCTCACGATGA---------GACTCTCATCGGTGCCAACTAT-GAAACCCTAAACAGGTCATTGTTATGAAGGCAGTAAGAA----------------------------------CTACGGTCCCTGGGCAAGCTCACGGCTCCCGCAC-GAAACCTTCAGAAACCCTGAGCTCCTGCCACGAGGG-TTCCGG--GTGCTTTTCTGTCTTATGACGTGTTTGTTAAGAACTTCTAAGGAAACATTAAAATAAGC-ACACCTGTGTGCGTATGCACCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          124793 478 -   1025902 CGCAGGTGCCGTCTGCAGAGT---GCGGCCTCCTCCCTGTTTCAAAGGCCCTGAGAGGACAGGCTCCGGCGGATTCAAAACATGTCCACCTCATCTCAGGAAACGGCACGGTTCTCTCTGTCAACACAAGA----GGAGGGAGGGACGAGGCTCTTTAC-ACAGTTTCCATGGTTGCAGATTCTCGAAGGTTACAAGAAGAGTTCTGAACACCTTCCTTCCTCCTCACCATGA---------GACTCTCATTGGTGCCGACTAT-GAAACCGTGAATAGGTCATTGTTATGAAGGCAGTGAGAACTGAACGCACACAGGCACACACCTGATACAAAAGCTACGGTCCCTGGGCAAGCTCACGGCTCCCGTAC-GAAACCTTCAGAAACCCTGAGCTCCGGTTCTGAGGG-TTCTGG--GTGCTTTCCTGTCTTATGACATGTTTGTTAAGAACTTCTAATGAAACATTAAAATAAGCAACACCTGTGTGTGTATGCACCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116355 475 -    811265 CACAGGTGCCGTCTGCAGAGT---GCGGCTTCCTCCCTGTTTGAAA-GCCCTGAGAGGACAGGCTCCAGCGGATTCAAAACCTGTCCACCTCATCTCAGGAAACGGCACAGTTCTCTCTGTCAACACAAGA----GGAGGGAGGGACGAGGCTCTTTAC-ACAGTTTCCATGGTTGCAGATTCTCGAAGGTTACAAGAAGAGTTCTGAACACCTTCCTTCCTCCTCACAATGA---------GAGTCTCATCGGTGCCGACTAT-GAAACCGTGAATAGCTCATTGTTATGAGGGCAGTAAGAACTGAACGCAGACAGGCACACACCTGATACAAAAGCTACGGTCCCTGGGCAAGCTCACGGCCCCCGCAC-GAAACCTTCAGAAACCCTGAGCTCCTGCCCTGAGGG-TTCTGG--GTGCTTTTCTGTCTTATGACATGTTTGTTAAGAACTTCTAATGAAACATTAAAATAAGC-ACACCTGTGTGCATATGCACC-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33059 477 -    350446 CGCAGGTGCCGTCTGCAGAGT---GCGGCCTCCTCCCTGTTTCAAAGGCCCTGAGAGGACAGGCTCCAGCGGATTCAAAACCTGTCCACCTCATCTCAGGAAACGGCACGGTTCTCTCTGTCAACACAAGA----GGAGGGAGGGACGAGGCTCTTTAC-ACAGTTTCCATGGTTGCAGATTCTCGAAGGTTACAAGAAGAGTTCTGAACACCTTCCTTCCTCCTCACGATGA---------GACTCCCATCGGTGCCGACTAT-GAAACCGTGAATAGGTCATTGTTATGAAGGCAGTAAGAACTGAACGCAGACAGGCACATACCTGATACAAAAGCTACGGTCCCTGGGCAAGCTCACGGCTCCCGCAC-GAAACCTTCAGAAACCCTGAGCTCCTGTCCTGAGGG-TTCTGG--GTGCTTTCCTGTCTTATGACATGTTTGTTAAGAACTTCTAATGAAACATTAAAATAAGC-ACACCTGTGTGTGTATGCACCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          191427 478 +   1230721 TGCAGGTGCCGTCTGCAGAGT---GCGGCTTCCTCCCTGTTTCAAAGGCCCTGAGAGGACAGGCTCCAGCGGATTCAAGACCTGTCCACCTCATGTCAGGAAACGGCACGGTTCTCTCTGTCAACAGAAGA----GGAGGGAGGGACGAGGCTCTTTAC-ACAGTTTCCATGGCTGCAGATTCTCGAAGGTGACAAGAAGAGTTCTGAACACCTTCCTTCCTGCTCACAAGGA---------GACTCTCATCGGTGCCGACTAC-GAATACGTGAATAGGTCATTGTTAGGAAGGCAGTAAGAACTGAACGCAGCCAGGCACACACCTGACACGAAAGCTGCAGTCCCTGGGCAAGCTCACGGCTCCCGCAC-GAAACCTTCAGAAGCCC-GAGCTCCTGCCCTGAGGG-TTCTGGGTGTGCTTTTCTGTCTTAGGACATGTTTGTCGAGAACTTGTAATGAAACATTAAAATAAGC-ACACCTGTGTGTGTATGCACCT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     47327 395 +   2853901 CGCAGGCGCCGGGTGCAGAGCGTGGCGGCTTCCTCCCTGTTTCACAGGCCCTAACCGGACGTGCTCCAGTGGATTTGCAACCCGCCCCCCTCATCTCAGGAAACGACTTGGTTCTCTCGGTCCACAGAAGGCCAGGGAGGGAGGGAAGAGGCTCCTCACAAGAGTTTCCATGGTTGCAGAATCTCAAAGCTTCC--------------ACACTTTCCTTCCTCCTCACAAGGA---------GATTCTCATCGGT------------------------------------------------GTGGAAT----------------------------CTGCGGTCCCCGGGCAAGCTCAAGACTCCCGAAG-GAAACCTTCAGAAACCCTGAGCCCCCACCCTGAGGG-TTCTGG--GTGCTTCTCTGTCTTGCAACATGTTTGTCAGGAA-TTCTAATGAAACGTTAAGATGAGC-ACACCtgtgtctgtgtgtacct
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                142708 469 +    465904 CGCAGGCGCCGGGCGCACCGCGTGGCGGCTTCCTTGCCGTTTCGCAGGCCCTGACAGGACGGGCTCCAGTGCATTCGAAACGCGTCCATCTCATCTCAGGAAACATCACGGTTCTCTCTGTCCACAGAAGGCCAGGGAGAGAGGGACGGGGCTCCCCAC-AGAGTTTCCATGTTTGCAGAGTCTCGAAAGTCAC--------------ACACCTTCCTTCCTCCTCACGACGA---------GATTCTCATCCGTGCCGACGAT-GAAACCGCGAACAGATGACTGTCACGAAGGCCGTAAGAGTGGAACGCAGAGAGGCACGCGCCTGGCACAAGAGCTGCGGTCCCTGGGCAAGCTCAAGGCTCCCGCAG-GAAACCTTCCGAAACCCTGAGCTCCCGCCCTGAGGG-TTCCGG--GTGCTCTTCGGTCCTGTAACATGTTTGTTATGAA-CTCTAATGAAACGTTAAGATGAGC-ACACCTCGGTCTCTGTGTGCGT
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          214210 468 -    735872 CGCAGGTGCCGGGCGCAGAGCGCGGCGGCTTCCTCGCTGTTTCACAGGCCCTAACAGGACGGGCTCCAGTGGATTCGAAATGTGTCCACCTCATCTCAGGAAACGTCATGGTTCCCTCTGTCCACAGAAGGCCACGGACGGAGGCACGAGGCTCCTCAC-GGAGTTTCCGCGGTGGCAGAATCTCGAAGGTGAC--------------ACACCTTCCTTCCTCCTCAC-ATGA---------GATTCTCATCGCTCCCGACTAA-GAAAATGCGAACAGATGACCATCACGAAGGCCGTAAGAGCGGAGCACAGACAGGCACGCTCCTGATACAAGACATGCGGTCCCTGGGCAAGCTCAAGGCTCCCGCAG-GAAAGCTTCAGAAACCCTGAGCTCCCGCCATGAGGG-TTCTGG--GTGCTTTCCTGTCCTGTAACATGTTTGTTATGAA-TTCTAATGAAACGTTAAGATGAGC-ACACCTGAGTCTCTGTGTGTGT
i cebCap1.NW_016107987v1       C 0 C 0
s otoGar3.GL873584                108287 452 +  11138919 TGCAGGCCCTGTCTGCACAAG---GGAGCTGCCTTTCTGATCTGAAGG-CCTGAGAGGACGG---CTGGAGGGGGCACGGCCTGTCTGCATCACCTCAGGAAAACCTATCACTCTCCCTGCTGGTAACTGA----GTGGGGAACAGTTAG--TTTCTGA-ACAACTTCAGTGCCTGCAAATTATTGATGGTCACAAGACGGGCT-TGAACATTTTACCTCCTCCTCACACAGACCCTCATCCGACCCTCATCAGGGCCAACTACGGAAAACAAGAACAGACCATTGTT----------TGAAGGTCAATCCCAAACTGAC--------------------GCAGTCATAGGGCAAACTCAGGGCTCCCACTCAGAAGCCTTCTGAAATCCCAAGCTCCTGCTCTGAGGATTTTTAG--CTACTTTTTCTTCTTCCAACGTATTTTGTATGAATGTGTGATGAGACATTAAAATAAAT-ACATGTGTGCGTATATTTATCT
i otoGar3.GL873584             I 1545 I 1564
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=156424.000000
s hg38.chrX_KI270880v1_alt         62383  85 +    284869 ----GTG----------TGTGTGTATGCACC--------------------------TGTGTGTT----TGTGTGTATGCA---CCTGTGTG--------TGTGTATGCACC--TA--------CGTGTGtgtgtatgcacc-tgtgtgtg
s panTro5.chrX                    182379 107 + 155549662 ----GTG----------TGTGTGTATGCATCTATGTATG--TGTGTATGCGCCTATGTGTGTATG----TGTGTGTATGCA---CC--TGTG--------TGTGTATGGACC--TG--------TGTGTGTGTGTATGCACC-TAtgtgtg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130433 105 +    417917 ----GTG----------TGTGTGTATGCACCTATGTATG--TGTGTATGCGCCTATGTGTGTATG----TGTGTGTATGCA---CC--TGTG--------TGTGTATGGACC--T----------GTGTGTGTGTATGGACC-TGTGTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          171952  81 +  25972781 ----GTG----------AGTGTGTATGCACC--------------------------TATGTATG----TGTGTGTACGCA---CC--TGTG--------AGTGTATGCACCTGTG--------TGTGTGTGTGTATGCACC-TGTG----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          125271  71 -   1025902 ----CT------------Gtgtgtatgcacc----------------------------------------tgtgtatgca---cc--tgtg--------tgtgtgtgcacc--tg--------tgtatgtgtgtatgcacc-cgtgtgtg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116830  78 -    811265 -----------------TGTGTGCATGCACC--------------------------TATGTATG------TGTGTGTACA---CA--CCTG--------TGTGTGTGCATC--TG--------TGTATGTGTGTATGCACC-TGTGTATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33536  99 -    350446 ----GTGTGTGTATGTGTGTGTGTATGCACC--------------------------TGTGTATG------TGTGTATGCA---CC--TGTG--------TGTGTATGTGTG--TGTATGCACCTGTGTGTGTGTGTGCACC-TGTGTATG
i manLeu1.NW_012108508v1       C 0 T 44
s colAng1.NW_012115411v1          191905  97 +   1230721 ----GTGTATGTGTGTTTGTGTGTACGCACC--------------------------TGTGTATGTGTCTGTGTGTATGCA---CC--TATG--------TATGTGCGTGTA--TG--------CACCTGTGTGTATGCACC-TGTGTATG
i colAng1.NW_012115411v1       C 0 I 4
s calJac3.chrY                     47722  97 +   2853901 ----ctg----------tgtgtgtatg--------------tgtgtacctgtgtgtatgtgtatgcacgtgtgtgtatgta---cc--catg--------tgtgtatgtacc------------tatgtgtgcgtatccacc-tgtgtctg
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                143177 127 +    465904 GGACCTG----------TGTGTGTATGCACTTATGTGTGCCTATCTACCCgtgtgtgtgtgtgtgcacctgtgtgtgtgtatgCCC--CGtgtatgtacctgtgtacacacc------------tatgtctgtgtatccaatgtgtatatt
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          214678  90 -    735872 GCACCTG----------TGCGTGTATG----------------------CAGCTGTGTGTGTATGCCC---TGTGTATGTA---CC--TGTG--------TGTGTATGCACC------------TATGTGTGTGTATGCACC-TGTGTGTG
i cebCap1.NW_016107987v1       C 0 I 82
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1856.000000
s hg38.chrX_KI270880v1_alt         62468 7 +    284869 cacctgt
s panTro5.chrX                    182486 7 + 155549662 tatgtgt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130538 1 +    417917 T------
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          125342 3 -   1025902 ----tgt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116908 7 -    811265 TATTTGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33591 7 -    350446 TATGTGT
i manLeu1.NW_012108508v1       T 44 C 0
s colAng1.NW_012115411v1          192006 7 +   1230721 AACTTGT
i colAng1.NW_012115411v1       I 4 C 0
s calJac3.chrY                     47819 7 +   2853901 cacctgt
i calJac3.chrY                 C 0 I 1090
s saiBol1.JH378345                143304 7 +    465904 cacctac
i saiBol1.JH378345             C 0 I 2
e cebCap1.NW_016107987v1          214768 82 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          172033 0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=63547.000000
s hg38.chrX_KI270880v1_alt         62475 37 +    284869 gtgtatgcacc----tatgtgtgTGTATGCACC------TATGTGTG
s panTro5.chrX                    182493 47 + 155549662 gtgtatgcacctgtgtatgtgtgtgtatgcacctgtgtatgtgtgtg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130539 40 +    417917 -TGTATGCACC------TATGTGTGTATGTACCTGTGTGTATGGACC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          125345 36 -   1025902 gtgtatgcacc----tgtatgtgtg-atgcacctgtgtatg------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116915 33 -    811265 GTGTATGCACC------TGTGTGTGTATGCACCTGTGTG--------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33598 37 -    350446 GTGTATGCACC----TGTGTGTGTGTGTGCACCTGTGTATG------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192013 37 +   1230721 GTGTACGCACC----TGTGTATGTGTATGCACCTGTGTGTG------
i colAng1.NW_012115411v1       C 0 I 42
s calJac3.chrY                     48916 39 +   2853901 gtgtatgcaca--catctatgtgtgtatgtacctgtgtgta------
i calJac3.chrY                 I 1090 C 0
s saiBol1.JH378345                143313 36 +    465904 gtgtatgcac-----tatgtgtgtgtacgcacctgtgtgta------
i saiBol1.JH378345             I 2 C 0
e cebCap1.NW_016107987v1          214768 82 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          172033  0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-5281.000000
s hg38.chrX_KI270880v1_alt         62512  2 +    284869 --CA---------
s panTro5.chrX                    182540  2 + 155549662 --ta---------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130579  2 +    417917 --TA---------
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116948  2 -    811265 --TA---------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s calJac3.chrY                     48955 13 +   2853901 tgcacctgggtaa
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                143349  7 +    465904 tgcacc------g
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1           33635  0 -    350446 C
e cebCap1.NW_016107987v1          214768 82 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e cerAty1.NW_012001098v1          125381  0 -   1025902 C
e colAng1.NW_012115411v1          192050 42 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          172033  0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=50532.000000
s hg38.chrX_KI270880v1_alt         62514 65 +    284869 TGTACC----TGTGTGTATGGACCTATG------------TATGTGTGTATG----CGtgtgtatgcacctgt------------gtatg----cacctgt
s panTro5.chrX                    182542 77 + 155549662 tgCACC----TGTGTGTATGGACCTGTGTGTGTATGCACCTATGTGTGTATG----TGTGTGTATGCACCTAT------------GTATG----CACCTGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130581 59 +    417917 TGTATG----TGTGTGTATGCACCTATG------------TGTGTGTGTATGGACTCACGTGTATGCACCTA--------------------------TGT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          125381 51 -   1025902 ----tg----tgtgtggatgcacctgtg------------tatgtgtgtgtg----------tatgcacctgt------------gtatg--------TGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        116950 51 -    811265 TGCACC----TGTGTGTATGCACCTGTG--------------TGTGTGTTTG----------TATGCACCTGT------------GTA----------TGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           33635 51 -    350446 ----TG----TGTGTGTATGCACCTGTG------------TATGTGTGTGTG----------TACGCACCTGT------------GTATG--------TGT
i manLeu1.NW_012108508v1       C 0 C 0
s calJac3.chrY                     48968 85 +   2853901 tgcacctatgtgtgtgtatctacctatg------------tgagtgtatacc----cctgtatgtatgtctgtatgcacctggtggtgtgtctgtacctat
i calJac3.chrY                 C 0 I 4
s saiBol1.JH378345                143356 69 +    465904 tgtacc----tgtgtatatgcacctatg------------tgtgtgtatcca----ccgaagtgtggacctgt------------gtgtgtgcgcacctgt
i saiBol1.JH378345             C 0 I 4
e cebCap1.NW_016107987v1          214768 82 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e colAng1.NW_012115411v1          192050 42 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          172033  0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=167866.000000
s hg38.chrX_KI270880v1_alt         62579 152 +    284869 gtgtatgcacc--tATGTGTGTGT----GTGTGTATGGACCTATG--------TATGTGTATGCACC--------TG--TG------------TGTATGT-------ATC----TGTGTGT--ATGGACCTATGTA----------TGTGTGTATGC------------GTGTGTATGCACCTGT-------------TATGCACC--------TGTGTGTATGCACC--TATGTGT----GTATGTACC
s panTro5.chrX                    182619 163 + 155549662 GTGTATGCACC--TA--TGTATGT----GTGTGTATGGACCTATG--------TATGTGTATGCACC------TATG--TG------------TGTATGT-------ACC----TGTGTGT--ATGCACCTATGTA----------TGTGTATGCACC--------TATGTGTGTATGTACCTGTG----------TGTATGTATC----TATGTATGTGTATGCACC--TATGTGT----GTATGTACC
i panTro5.chrX                 C 0 I 2
s gorGor5.CYUI01015925v1          130640 177 +    417917 GTGTATGTACC--TA----TGTAT----GTGTGTATGCGCCTATG--------TGTGTGTATGCACCTGTGTATGTG--TG------------TGTATGC-------ACCTGTGTGTGTGT--ATGGACCTATGTA----------TGTGTATGCACC--------TATGTGTGTATGTACCTGTG----------TGTATGGACCTATGTATGTGTGTGTATGCACCTGTGTGTGT----GTATGGACC
i gorGor5.CYUI01015925v1       C 0 I 2
s cerAty1.NW_012001098v1          125432 155 -   1025902 GTGTACGCACC----------TGT----GTGTGTATGCACCTGTGTATGTGTTTGTGTGTATGCACCTGTGTGTGTG--TATGCACCTGTG--TGTGTGT-------GTT----TGTGTGT--ATGCACCTGTGTG----------------TGTGTG--------TTTGTGTGTATGCACCTGTG----------------------------TATGTGTATGCACCTGTGTATGT----G--------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117001 169 -    811265 GTGTATGCACC--------TGTGT----ATGTGTATGCACCTATG--TGTGTTTGTGTGTATGCACCTGTGTGTACC--TG------------TGTGTGT-------GTT----TGTGTGT--ATGCACCTGTGTGT------ACCTGTG--TGTGTG--------TTTGTGTGTATGCACCTGTG----------TGTATGCACC--------TGTGTGTATGCACCTGTATGTTT----GTGTGTA--
i chlSab2.chrUn_KE147541v1     C 0 I 6
s manLeu1.NW_012108508v1           33686 207 -    350446 GTGTATGCACC--TG--TGTGTGT----GTGTGTATGCACCTGTG--TATGTGTGTGTGTATGCACCTGTGTGTGTG--TGTGTGTATGCACCTGTGTAT-------GTG----TGTGTGT--ATGCACCTGTGTGTGTACGCACCTGTGTATGTGTG--------TTTGTGTGTATGCACCTGTGTATGTGTGTTTGTATGCACC----TGTGTGTGTGTATGCACCTGTGTGTGT----GTGTGTA--
i manLeu1.NW_012108508v1       C 0 I 6
s calJac3.chrY                     49057 194 +   2853901 gcatatgcacctgtgtgtgcgtgtacctctgtgtgtgcgctcctg--------tgtatgaatgcacctgtgtgtatgcacg------------tgtgcgtatgCACCAAC----TGTGTGTGTATCCacctgtctg------cacctgtgtgtacctatgtgtgtacctgtgtgtatgcacctgtg--------------tgtacc--------tgtgtatatgcacctgcgtatgca---gtatgtgc-
i calJac3.chrY                 I 4 C 0
s saiBol1.JH378345                143429 164 +    465904 atgtatgcccc-----gtgtgtgtac--ctgtgtacgcacccatg--------tatgtgtattcacctgtgtatccaccta------------tgtgtgt-------agc----tgtatgtgGATACACCTG--------------TGTGTATGCCC---------CGTGTGCgtatgtacctatg--------------tgtatc----caa-tgtgtatattcacctacgtgt------gtatgccct
i saiBol1.JH378345             I 4 C 0
s cebCap1.NW_016107987v1          214850 141 -    735872 GTGTATGCACC--TATGTGTATGCA---CTGTGTATGCACCTATG--------TGTGTGTATGCACCTGTGTTTACG--TG------------TGTATGT-------ACC----TGTGTGT--ATGCACCTA----------------------------------TGTATGTGTATGCAGCTGTG--------------TGTATC------------------CACCTATGTGTGTACCTGTATGT---
i cebCap1.NW_016107987v1       I 82 C 0
e otoGar3.GL873584                108739 1564 +  11138919 I
e colAng1.NW_012115411v1          192050  42 +   1230721 I
e rheMac8.chrX                    115790   0 + 149150640 I
e macNem1.NW_012017243v1          172033   0 +  25972781 C
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=31578.000000
s hg38.chrX_KI270880v1_alt         62731 24 +    284869 TGTG------TATGCACC----TATGTGTGTATG
s panTro5.chrX                    182784 28 + 155549662 TGTG------TATGCACCTATGTATGTGTGTATG
i panTro5.chrX                 I 2 C 0
s gorGor5.CYUI01015925v1          130819 28 +    417917 CGTG------TATGCACCTATGTATGTGTGTATG
i gorGor5.CYUI01015925v1       I 2 C 0
s macNem1.NW_012017243v1          172033 24 +  25972781 TGTG------TATGCACC----TGTGTGTGTATG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          125587 24 -   1025902 TGTG------TATGCACC----TGTGTGTGTGTA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117176  4 -    811265 TGTG------------------------------
i chlSab2.chrUn_KE147541v1     I 6 I 2
s manLeu1.NW_012108508v1           33899 28 -    350446 TGTGTGTGTGTATGCACC----TATGTATG--TG
i manLeu1.NW_012108508v1       I 6 C 0
s calJac3.chrY                     49251 21 +   2853901 ---g------tatgtacc----tgtgtgtgtgca
i calJac3.chrY                 C 0 I 11
s saiBol1.JH378345                143593 22 +    465904 --tg------tgtgcacc----tatgtgtatgca
i saiBol1.JH378345             C 0 I 11
s cebCap1.NW_016107987v1          214991 21 -    735872 ---T------TATGCACC----CATGTGTGTATG
i cebCap1.NW_016107987v1       C 0 I 189
e otoGar3.GL873584                108739 1564 +  11138919 I
e colAng1.NW_012115411v1          192050 42 +   1230721 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=-2978.000000
s hg38.chrX_KI270880v1_alt         62755 6 +    284869 CACCTA--
s panTro5.chrX                    182812 4 + 155549662 CACC----
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130847 4 +    417917 CACC----
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172057 4 +  25972781 CACC----
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          125611 4 -   1025902 TGCG----
i cerAty1.NW_012001098v1       C 0 I 2
s manLeu1.NW_012108508v1           33927 4 -    350446 CACC----
i manLeu1.NW_012108508v1       C 0 I 2
s calJac3.chrY                     49283 6 +   2853901 cacc--tg
i calJac3.chrY                 I 11 C 0
s saiBol1.JH378345                143626 6 +    465904 ctcc--tg
i saiBol1.JH378345             I 11 C 0
s cebCap1.NW_016107987v1          215201 6 -    735872 CACC--TA
i cebCap1.NW_016107987v1       I 189 C 0
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        117180 2 -    811265 I
e colAng1.NW_012115411v1          192050 42 +   1230721 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=130324.000000
s hg38.chrX_KI270880v1_alt         62761 59 +    284869 TGTG--------------TGTATGCACC--------TGTGTTTGTGCATATGCACC----------TGTGTGTGTGTATGCACC-------------------TGTGTGT
s panTro5.chrX                    182816 61 + 155549662 TGTG--------------TGTATGCACC--------TGTGTGTGTGTGTATGGACC----------TGTGTGTGTGTATGCACC-----------------TATGTGTGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130851 47 +    417917 TCTG--------------------------------TGTGTTTGTGCATATGCACC------------TGTGTGTGTATGCACC-------------------TGTGTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172063 62 +  25972781 TGTG--------------TGTATGCACC--------TGTGTATGTGTGTATGCACCTGTG------TGTGTGTGTGTATGCACC-------------------TGTGTG-
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1          125617 65 -   1025902 TGTG--------------TGTATGCACC--TGTGCGTGTGTTTGTGTGTATGCACC----------TGTGTGTGTGTATGCACC-------------------TGTGTGT
i cerAty1.NW_012001098v1       I 2 I 466
s chlSab2.chrUn_KE147541v1        117182 57 -    811265 TGTG--------------TGTGTGCACC--------------TGTGTGTATGCACCTGTG------TGTTTGTGTGTATGCACC-------------------TGTGTGT
i chlSab2.chrUn_KE147541v1     I 2 I 1
s manLeu1.NW_012108508v1           33933 77 -    350446 TGTG--------------TGTATGCACCTGTGTATGTCTGTTTGTGTGTATGCACCTGTGTATGTCTGTTTGTGTGTATGCACC-------------------TGTGTGT
i manLeu1.NW_012108508v1       I 2 I 18
s colAng1.NW_012115411v1          192092 61 +   1230721 TGTA--------------TGTATGCACC--------TGTGTGTGTGTGTATGCACCTGTG------TGTATGCACCTGTGTATG-------------------TGTGT--
i colAng1.NW_012115411v1       I 42 C 0
s calJac3.chrY                     49289 90 +   2853901 tgtgtgtattcccatgtgcatgtgtagc----------tatgtgtgtgcatgcacc----------tatgtatgtgtatccaccctgggtatccacctatgtgtgtgcac
i calJac3.chrY                 C 0 I 4
s saiBol1.JH378345                143632 62 +    465904 tgtgtatgcac-------cgtgtgtacc------------tgtgtgtatatgcacc----------tatgtgtgtgtatccacc-------------------tgtgtac
i saiBol1.JH378345             C 0 I 4
s cebCap1.NW_016107987v1          215207 53 -    735872 TGTG--------------TGTATGTACC--------------TGTGTGTATGCACC----------TATGGGTGTGTATGTACC-------------------TGTGTGT
i cebCap1.NW_016107987v1       C 0 I 187
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1860.000000
s hg38.chrX_KI270880v1_alt         62820 2 +    284869 TT
s panTro5.chrX                    182877 2 + 155549662 AT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130898 2 +    417917 TT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172125 1 +  25972781 -T
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117240 1 -    811265 -T
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1           34028 2 -    350446 TT
i manLeu1.NW_012108508v1       I 18 C 0
s colAng1.NW_012115411v1          192153 2 +   1230721 CT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     49383 2 +   2853901 at
i calJac3.chrY                 I 4 C 0
s saiBol1.JH378345                143698 2 +    465904 at
i saiBol1.JH378345             I 4 C 0
e cebCap1.NW_016107987v1          215260 187 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e cerAty1.NW_012001098v1          125682 466 -   1025902 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=60345.000000
s hg38.chrX_KI270880v1_alt         62822 23 +    284869 G--------------------------------------------------------------------TGTGTATGCACCTGTGTGTGTG
s panTro5.chrX                    182879 91 + 155549662 GTACCTGTGTGTATGGACCTGTGTGTATGTACCTGTGTATGCACCTATGTGTGTATGCACCTATGTATATGTGTATGCACCTGTGTGTGTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130900 23 +    417917 G--------------------------------------------------------------------TGTGTATGCACCTGTGTGTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172126 23 +  25972781 G--------------------------------------------------------------------TGTGTATGCACCTGTGTGTGTG
i macNem1.NW_012017243v1       C 0 M 436
s cerAty1.NW_012001098v1          126148 23 -   1025902 G--------------------------------------------------------------------TGTGTATGCATCTGTGTGTGTG
i cerAty1.NW_012001098v1       I 466 C 0
s chlSab2.chrUn_KE147541v1        117241 23 -    811265 G--------------------------------------------------------------------TGTGTGTGCACCTGTGTGTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34030 23 -    350446 G--------------------------------------------------------------------TGTGTATGCACCTGTGTGTGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192155 23 +   1230721 G--------------------------------------------------------------------TGTGTATGCACCTGTGTGTGTG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     49385 23 +   2853901 ------------------------------------------------------------------g--tgtgtatgcatctgtgtgtgca
i calJac3.chrY                 C 0 I 657
s saiBol1.JH378345                143700 25 +    465904 ------------------------------------------------------------------gtatgtgtatgcagctgtgtgtatg
i saiBol1.JH378345             C 0 I 1067
e cebCap1.NW_016107987v1          215260 187 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=40137.000000
s hg38.chrX_KI270880v1_alt         62845 20 +    284869 --ATGCACACGCACGCCCGTGT
s panTro5.chrX                    182970 20 + 155549662 --ATGCACACGCACGCCCGTGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130923 20 +    417917 --ATGCACACGCACGCCCGTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          126171 18 -   1025902 --ATGCACACGCACA--CATGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117264 18 -    811265 --ATGCACACGCACG--CATGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34053 18 -    350446 --ATGCACACGCACA--CATGT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192178 18 +   1230721 --ACGCACACACACA--CACGT
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     50065 20 +   2853901 acacacatacacaca--caTGT
i calJac3.chrY                 I 657 C 0
s saiBol1.JH378345                144792 20 +    465904 agacacacacacaca--cGTGT
i saiBol1.JH378345             I 1067 C 0
e cebCap1.NW_016107987v1          215260 187 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          172149 436 +  25972781 M
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=66637.000000
s hg38.chrX_KI270880v1_alt         62865 18 +    284869 TTATCTCCAAATACCCTG
s panTro5.chrX                    182990 18 + 155549662 TTATCTCCAAATACCCTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130943 18 +    417917 TTATCTCCAAATACCCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          126189 18 -   1025902 TTATCTCCAAATACCCCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117282 18 -    811265 TTATCTCCAAATACCCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34071 18 -    350446 TTATCTCCAAATACCCCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192196 18 +   1230721 TTATCGCCAAATACCCCG
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     50085 18 +   2853901 TTATCTCCAAATAGCCCG
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                144812 18 +    465904 TTATCTCCAAATACCCCG
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          215447 18 -    735872 TTATCTCCAAATACCCCA
i cebCap1.NW_016107987v1       I 187 C 0
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macNem1.NW_012017243v1          172149 436 +  25972781 M
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=182945.000000
s hg38.chrX_KI270880v1_alt         62883 43 +    284869 TTCTAATGTTCTAGAATGCTGGCACCCGGTCTGATAAAAATCA
s panTro5.chrX                    183008 43 + 155549662 TTCTAATGTTCTAGAATGCTGGCACCCGGTCTCATAAAAATCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          130961 43 +    417917 TTCTAATGTTCTAGAATGCTGGCACCCGGTCTGATAAAAATCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172588 43 +  25972781 TTCTAACATTCTAAAATGCAGGCAGCCGGTCTGATAAAAATCA
i macNem1.NW_012017243v1       M 436 C 0
s cerAty1.NW_012001098v1          126207 43 -   1025902 TTCTAACGTTCTAGAATGCAGGCAGCCGGTCTGATAAAAATCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117300 43 -    811265 TTCTAACGTTCTAGAATGCAGGCAGCTGGCCTGATAAAAATCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34089 43 -    350446 TTCTAACGTTCTAGAATGCAGGCAGCCGGTCTGATAAAAATCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192214 43 +   1230721 TTCTAACGTTCTAGAATGCAGGCAGCCGGTCTGATAAAAATCA
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     50103 41 +   2853901 TTCTAACGTTCTAGAATGCAGGCATGTGGTCTGATAAAAAC--
i calJac3.chrY                 C 0 C 0
s saiBol1.JH378345                144830 43 +    465904 TTCTAACGTTCTAGAATGCAGGCATGTGGTCTGAAAAAAATCA
i saiBol1.JH378345             C 0 C 0
s cebCap1.NW_016107987v1          215465 43 -    735872 TTCTAACGTTCTAGAATGCAGGCATGTGGTCTGATAAAAATCA
i cebCap1.NW_016107987v1       C 0 I 3172
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=208066.000000
s hg38.chrX_KI270880v1_alt         62926 63 +    284869 CAGGTTAGGTGGACACCAAA---ACTGAGTAGCTTCCAGAAATTAGagaagaactaaataaacaga
s panTro5.chrX                    183051 63 + 155549662 CAGGTTAGGTGGATACCAAA---ACTGAGTAGCTTCCAGAAATTAGagaagaactaaataaacaga
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131004 63 +    417917 CAGGTTAGGTGGACACCAAA---ACTGAGTAGCTTCCAGAAATTAGagaagaactaaataaacaga
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172631 66 +  25972781 TGGGTTAGGTGGATACCAAAACTACTGAGTAGCTTCCAGAAATTAGaaaagaactaaataaacaga
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          126250 66 -   1025902 CGGGTTAGGTGGATACCAAAACTACTGAGTAGCTTCCAGAAATTAGaaaagaactaaataaacgga
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117343 66 -    811265 GGGGTTAGGTGGATACCAAAACTACTGAGTAGCTTCCAGAAATGAGagaagaactaaataaacgga
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34132 66 -    350446 CGGGTTAGGTGGATACCAAAACTACTGAGTAGCTTCCAGAAATTAGAAaagaactaaataaacgga
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192257 66 +   1230721 CGGGTTAGGTGGGTACCAAAACTACTGAGTAGCTTCCAGAAattaaagaagaactaaataaacgga
i colAng1.NW_012115411v1       C 0 C 0
s calJac3.chrY                     50144 59 +   2853901 -------ACTGGATACCAAAACTGCAAAGTAGCTTCCAAAAATTAAAGAACAACTAAATAAATGGA
i calJac3.chrY                 C 0 I 292
s saiBol1.JH378345                144873 63 +    465904 TGGGTTAATTGgataccaaaactacaaagttgcttccaaaaattcaag---aactaaataaacaga
i saiBol1.JH378345             C 0 C 0
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=21511.000000
s hg38.chrX_KI270880v1_alt         62989 9 +    284869 tagaaactt
s panTro5.chrX                    183114 9 + 155549662 tagaaactt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131067 9 +    417917 tagaaactt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172697 9 +  25972781 tagaaattt
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          126316 9 -   1025902 tagaaattt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117409 9 -    811265 tagaaatgt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           34198 9 -    350446 tagaaattt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192323 9 +   1230721 tagaaattc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                144936 9 +    465904 tacatattt
i saiBol1.JH378345             C 0 I 2023
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=1677364.000000
s hg38.chrX_KI270880v1_alt         62998 807 +    284869 aatcaaggaggtgcaagaggtgtacccggggaagtacacaacgttgctgaacaaaacctaaatgaatggaaagtcctttgtttgtggattggaaaatactgttaaggtatcaattatcctaaattgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaagcaatttttaaagaacaggcttggactcacagtatctgctttcaaaatttgctagaaagttacactaatctggaaagtgccatg-aaggtgaggggatgcacatacagcaatgggatggaaataataataaa-acagacgta---cgtactcaactgactttcaacaacacaattccac-----------------------------------------------------------------------------ggggggagaaaagactgttcaatatacggtgctggggtcatccagatacctcacctcataccacgcagaaaaactgacctgaactggatcacaggccgaaacgcaaacctaaaaccacactgctttctcaagataa--ataggagaaaatatttgacaccttgtggtatgcaaacattttgtaataagacacaaaaaat-aagagtcataaaagaaaaaagttgaaaaactaaacacttttgctctttg--agacactgaagaaaacaaaaagcaagccagactcaagagacatatgcacacaccacattgtcttaccaaggacttgccaacagttgtatgtaaagagctctcgcaactcagtgataacataacccaattt-aaaaagcaaacacacgacctgaacagacgctcgacagtgggaaccacatgaatggcaaataagcacctgaaaat
s panTro5.chrX                    183123 811 + 155549662 aatcaaggaggtgcaagaggtgtacccggggaagtacacaacgttgctgaacaaaacctaaatgaatggaaagtcctttgtttgtggattggaaaatactgttaaggtatcaattatcctaaattgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaagcaatttttaaagaacaggcttggactcacagtatctgctttcaaaatttgctagaaagttacactaatctggaaagtgccatg-aaggtgaggggatgcacatacagcaacgggatggaaataataataaa-acagacgta---cgtactcaactgactttcaacaacacaattccac-----------------------------------------------------------------------------ggggtgagaaaagactgttcaatatacggtgctggggtcatccagatacctcacctcataccacgcagaaaaactgacctgaactggatcacaggccgaaacgcaaacctaaaaccacgctgctttctcaagataaatataggagaaaatctttgacaccttgaggtatgcaaacattttgtaataagacacaaaaaat-aagagtcataaaagaaaaaagttgaaaaactaaacactttt-ctctttgaaagacactgaagaaaacaaaaagcaagccggactccagagacatatgcacacaccacattgtcttaccaaggacttgccaacagttgtatgtaaagagctctcgcaactcagtgaaaacataacccaatttaaaaaagcaaacacacgacctgaacagacacttgacagtgggaaccacatgaatggcaaataagcacctgaaaat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131076 808 +    417917 aatcaaggaggtgcaagaggtgtactcggggaagtacacaacgttgctgaacaaaacctaaatgaatggaaagtcctttgtttgtggattggaaaatactgttaaggtatcaattatcctaaa-tgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaAGCAATTTTTAaagaacaggcttggactcacagtatctactttcaaaatttgctagaaagttacactaatctggaaagtgccatgaaaggtgaggggatgcacatacagcaatgggatggaaataataataaa-acagacgta---catactcaactgactttcaacaacacaattccaa-----------------------------------------------------------------------------gggg-gagaaaagactgttcaatatacggtgctggggtcatccagatacctcacctcataccacgcagaaaaactgacctgaactggatcacaggccgaaacgcaaacctaaaaccacactgctttctcaagataa--ataggagaaaatctttgacaccttgtggtatgcaaacattttgtaacaagacacaaaaaat-aagagtcatagaagaaaaaagttgaaaaactaaacacttttgctctttgaaagacactgaagaaaacaaaaagcaagccggactcgagagacatatgcacacaccacattgtcttaccaaggacttgccaacagttgtatgtaaagagctcttgcaactcagtgaaaacataacccaattt-aaaaagcaaacacacgacctgaacagatgcttgatagcgggaaccacatgaatggcaaataagcacctgaaaat
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          172706 799 +  25972781 aatcaaggaggtgcaagatgtgtacccgagaaactacacaacgtagctgaacaaaacctgaataaacggaaagtcctttgctggtggattggaaaatattattaaggtgtcaatgaacccaaattgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaagcgacttttaaagaacaggcttggactcacactaccggctttcaaaatttgctggaaagttacactaatctggaaagggccacg-aaggtgaggggatgcacatacagcaatgggaagaacatagtaatgaacccagatgta---cgtactcaactgacttccaacaacacaattccat-----------------------------------------------------------------------------ggg--gggaaaagagtcaccaacatatggtgct-gggtcccccccatacctcacctcacaccacgcagaaaaactgacctgaactggatcacaggccgaaacgcaaacctaaaaccacaaagctttctgaagacaa--at---agaaaatgtttgacaccttgggctatacaaacagtttgtaataagatacaaaaaat-aagagtcat-----aaaaaagctgaaaaactaaacacttctgctctttgaaagacactgaagaaaataaaaagcaagccggactcgagagaaatacgcacaaaccacattaccttaccaaggactcgcccacagttttacgcaaagagctctcgcaactcagtgaaaacgtaacccgattt-aaaaagcacacaaacgatccgaacaggtgcttcacggcggaaaccacacgaatggaaaataagcacctgaaaat
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          126325 800 -   1025902 aatcaaggaagtgcaagatgtgtacctgggaaactatacaacgtagctgaacacaacctgaataaacggaaagtcctttgctggtggattggaaaatattattaaggtgtcaatgaacccaaactgatccacagattcaaagc-aatcccaatcaaaattgcaacaggcttttcttgctggaaAGCGACTTTTAaagaacaggcttggactcacactaccggctttcaaaatttgctggaaagttacactaacctggacagggccatg-aaggtgaggatgtgcacatacagcaacgggaagaacatagcaatgaacccagatgta---cgtactcaactgacttccaacaacacaattccat-----------------------------------------------------------------------------ggg--ggaaaaagagttttcaacatatggtgctggggtcccccccatacctcacctcataccccgcagaaaaactgacctgaactggatcacaggctgaaacgcaaacctaacaccacgaagctttctgaagacaa--at---agaaaatgtttgacaccttgggctatacaaacagtttgtaataagacacaaaaaat-aagagtcat-----aaaaaagctgaaaaactacacacttctgctctttgaaagacactgaagaaaataaaaagcaagccggactcgagagaaatacgcacaaaccacgttatcttaccaaggactcgcccacagttttatgcaaagagctctcgcaactcagtgaaaacgtaacccgattt-aaaaagcacgcaaacgatctgaacaggtgcttcacagcggaaaccacatgaatggaaaataagcacctgaaaat
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        117418 880 -    811265 aatcaaggaagtgcaagatgtgtacccgggaaactacacaacgtagctgaacaaaacctgaataaatggaaagtcctttgttcctggattggaaaacattgttaaggtatcaatgaacccaaattgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaAGCGACTTTTAaagaacaggcttggactcacactaccggctttcaaaatttgctggaaagttacactaatctggacagggccatg-aaggtgagaggatacacatacagcaatgggaataacatagtaatgaacacagatgta---cgtactcaactgacttccaacaaCACAATTCCATGGGGggaaaagactcaccaacatagtaacgaacccagatgtacgtactcaactgacttccaacaacacaattccatgggg--ggaaaaagagtcttcgacatatggtgctggggtcctccccatacctcacctcatatcacgcagaaaaactgacctgaactggatcacaggacgaaatgcaaacctaaaaccacgaagctttctgaagacaa--ac---agaaaatctttgacaccttgggctatacaaacagtttgtaataagacacaaaaaat-gagagtcat--aagaaaaaagctgaaaaactaaacacttctgctctctgaaagacactgaagaaaacaaaaagcaagccggagtcgagagaaatacgcacaaaccacactgtcttaccaaggactcgcccacagttttacacgaagagctctcgcaactcagtgaaaacataacccgattt-aaaaagcagacaaacgatctgaacagatgcttcacagcggaaaccacatgaatgcaaaataagcacctgaaaat
i chlSab2.chrUn_KE147541v1     C 0 T 10627
s manLeu1.NW_012108508v1           34207 801 -    350446 aatcaagaaggtgcaagatgtgtacccgggaaactatacaacgtagctgaacaaaacccgaataaacggaaagtcctttgtccgtggattggaaaatattattaaggtgtcaatgaacccaaattgatccacagattcaaagc-aatcccaatcaaaattccaacaggcttttcttgctggaaagcgacttttaaagaacaggcttggactcacactaccggctttcaaaatttgctggaaagttacactaacctggacagggccatg-aaggtgaggggatgcacatacagcgatgggatgaacatagtaacgaacccagatgta---cgtactcaactgacttccaacaacacaattccat-----------------------------------------------------------------------------ggg--ggcaaaagagtcttcgacatatggtgctggggtcccccccatacctcacctcataccacgcagaaaaactgacctgaactggatcacaggccgaaacgcaaacctaacaccacgaaggtttctgaagacaa--at---agaaaatctttgacaccttgggctatacaaacagtttgtaataagacacaaaaaataaagagtcat-----aaaaaagctgaaaaactacacacttctgctctttgaaagacactgaagaaaataaaaaacaagccggacgcgagagaaataggcacaaaccacgttatcttaccaaggactcgcccacagttttacgtaaagagctctcgcaactcagtgaaaacgtaacccgattt-aaaaagcacacaaacgatcttaacaggtgcttcacagcggaaaccacacaaatggaaaataagcacctgaaaat
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          192332 747 +   1230721 aatcaaggaggtccaagacgtgtacccgggaaactaaacaacgcagctgaacaaaacctgagtaaatggaaagtcctttgttcgtggattggaaaacattgctaaggtatcaatgaacccaaactgatccacagattcaaagcaaatcccaaccaaaattccaacaggcttttcttgctggaaAGCGACTTCTAAAGAACAGGCTTGGACTCACA-----------------------------TACA-----------------------------GGGATGCACATACAGCAATGGGATGAAAATAGCTATACACCCAGATGTACGTCGTCGTCAACCGACTTTCAACAACACAATTCCAT-----------------------------------------------------------------------------GGG--GGAAAAAGACTCACCAACATATGGTGCTGCGGTCATCCTGATacctcatctcataccacgcagaaaaactgacctgaactggatcacaggccaaaacgcaaacctaaaaccacaaagctttctgaagacaa--at---agaaaatctttgacgccttgggctgtaaaaacagtttgtgataagacacaaaaaat-aagagtctt-----aaaaaagctgaaaaactaaacacttccgctctttgaaagacactgaagaaaataaaaagcaagccggactcgagagaaataggcacacagcacgttatcttaccaaggccttgcccacaggttgacgtaaagagctctcgcaactcagtgaaaacgtgacccgattt-acaaagcacacgaacgatctgaacaggtgcttcacagcggaaaccacatgaatggaaaataagcacctgaaaat
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                144945 2023 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e rheMac8.chrX                    115790   0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=76017.000000
s hg38.chrX_KI270880v1_alt         63805 49 +    284869 tcctcggcgtcaccaggccgcagggaaatgcaatcaaaatcGTGCAGTA
s panTro5.chrX                    183934 49 + 155549662 tcctcggcgtcgccaggccgcaggggaatgcaatcaaaatcGTGCAGTA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131884 49 +    417917 tcctcggcgtcaccaggccgcagggaaatgcaatcaaaaTTGTGCAGTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          173505 49 +  25972781 ccctcggcgtcacccggccacagggaaatgcgatcgaaaccgtgccctg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          127125 49 -   1025902 ccctcggcgtcaccaggccacagggaaatgcgatcgaaaccgtgccctg
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35008 49 -    350446 ccctcggcgtcaccaggccacagggaaatgcgatagaaatcgtgccctg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193079 49 +   1230721 ccctcggccacaccaggccacggggaaatgcgatcgaaaccatgccctg
i colAng1.NW_012115411v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                144945 2023 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=52155.000000
s hg38.chrX_KI270880v1_alt         63854 23 +    284869 CTggccgggtgtggttgccctcg
s panTro5.chrX                    183983 23 + 155549662 CTggccgggtgtggttgccctcg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131933 23 +    417917 CTggccgggtgtggttgccctcg
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          173554 23 +  25972781 ctggccgggtgtgcttgccctcg
i macNem1.NW_012017243v1       C 0 I 3187
s cerAty1.NW_012001098v1          127174 23 -   1025902 ctggccgggtgtgcttgccctcg
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35057 23 -    350446 ctggccgggtgtgcttgccctcg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193128 23 +   1230721 ctggccgggtgtgcttgccctcg
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                146968 23 +    465904 CTggccggccgcggtggctcacg
i saiBol1.JH378345             I 2023 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=501.000000
s hg38.chrX_KI270880v1_alt         63877 1 +    284869 t
s panTro5.chrX                    184006 1 + 155549662 t
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131956 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          127197 1 -   1025902 c
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35080 1 -    350446 c
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193151 1 +   1230721 c
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                146991 1 +    465904 c
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e rheMac8.chrX                    115790 0 + 149150640 I
e macNem1.NW_012017243v1          173577 3187 +  25972781 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=69670.000000
s hg38.chrX_KI270880v1_alt         63878 31 +    284869 ctgtcatcccagcactctgggaggctggggc
s panTro5.chrX                    184007 31 + 155549662 ctgtcatcccagcactctgggaggctggggc
i panTro5.chrX                 C 0 I 134
s gorGor5.CYUI01015925v1          131957 31 +    417917 ctgtcatcccagtactctgggaggctggggc
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          176764 31 +  25972781 ctgtcatcccagcactttgggaggccgaggt
i macNem1.NW_012017243v1       I 3187 C 0
s cerAty1.NW_012001098v1          127198 31 -   1025902 ctgtcatcccagcactttgggaggccgaggt
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35081 31 -    350446 ctgtcatcccagcactttgggaggccgaggt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193152 31 +   1230721 ctgtcatcccagcacactgggaggccgaggt
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                146992 31 +    465904 ctgtcatcccagtactgtgggcggccgagga
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e rheMac8.chrX                    115790  0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=7277.000000
s hg38.chrX_KI270880v1_alt         63909 4 +    284869 gggt
s panTro5.chrX                    184172 4 + 155549662 gggt
i panTro5.chrX                 I 134 C 0
s gorGor5.CYUI01015925v1          131988 4 +    417917 gggt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          176795 4 +  25972781 gggc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          127229 4 -   1025902 ggga
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35112 4 -    350446 ggga
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193183 4 +   1230721 ggga
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                147023 4 +    465904 gggt
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e rheMac8.chrX                    115790 0 + 149150640 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=90976.000000
s hg38.chrX_KI270880v1_alt         63913 36 +    284869 ggatca--cctgaggtcag--gagttcaagaccagcctga
s panTro5.chrX                    184176 36 + 155549662 ggatca--cctgaggtcag--gagttcaagaccagcctga
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          131992 36 +    417917 ggatca--cctgaggtcag--gagttcaagaccagcctga
i gorGor5.CYUI01015925v1       C 0 I 133
s rheMac8.chrX                 149022748 36 - 149150640 ggatca--cctgaggtcag--gagttcaagaccagcctgg
i rheMac8.chrX                 I 484 C 0
s macNem1.NW_012017243v1          176799 40 +  25972781 ggatcagccctgaggccaggcgagttcaagaccagcctgg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          127233 36 -   1025902 ggatcc--cttgagcccag--gagtttgagacccgcctgg
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           35116 36 -    350446 ggatcc--ctcgagcccag--gagtttaagacccgcctgg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          193187 36 +   1230721 ggatcc--cttgagcccag--gagtttgagacccgcctgg
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                147027 36 +    465904 ggatca--cccgaggtcag--gagttcgaggccggcctgg
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=97661.000000
s hg38.chrX_KI270880v1_alt         63949 39 +    284869 ccaacatagtgaaaccccatctctactaaaaatacaaaa
s panTro5.chrX                    184212 39 + 155549662 ccaacatagtgaaaccccatctctactaaaaatacaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          132161 39 +    417917 ccaacatagtgaaaccccatctctactaaaaatacaaaa
i gorGor5.CYUI01015925v1       I 133 C 0
s rheMac8.chrX                 149022784 39 - 149150640 ccaacatggtgaaaccccgtctctactaaaaatacaaaa
i rheMac8.chrX                 C 0 I 1
s macNem1.NW_012017243v1          176839 39 +  25972781 ccaacatggtgaaaccccgtctctactgaaaatacaaaa
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1          127269 39 -   1025902 gcaacacagcaagaccccatctctacaaaaattataaaa
i cerAty1.NW_012001098v1       C 0 I 1
s manLeu1.NW_012108508v1           35152 39 -    350446 gcaacacagcaagaccccatctctacaaaaattataaaa
i manLeu1.NW_012108508v1       C 0 I 1512
s colAng1.NW_012115411v1          193223 39 +   1230721 gcaacacagcaagaccccatctctacaaaaattataaaa
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                147063 39 +    465904 ccaacatggtgaaatgccatctctcctaaaaacacaaag
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=48578.000000
s hg38.chrX_KI270880v1_alt         63988 18 +    284869 ctagccgggcgtggtggc
s panTro5.chrX                    184251 18 + 155549662 ttagccgggtgtggtggc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          132200 18 +    417917 ttagccgggcgtggtggc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022824 18 - 149150640 ttagccaggtgtagtggc
i rheMac8.chrX                 I 1 C 0
s macNem1.NW_012017243v1          176879 18 +  25972781 ttagccaggcgtagtggc
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1          127309 17 -   1025902 -tggccggacgcggtggc
i cerAty1.NW_012001098v1       I 1 I 1054
s manLeu1.NW_012108508v1           36703 18 -    350446 ttagccaggcgtggtggc
i manLeu1.NW_012108508v1       I 1512 C 0
s colAng1.NW_012115411v1          193262 18 +   1230721 gtagccggacgtgatggc
i colAng1.NW_012115411v1       C 0 I 3465
s saiBol1.JH378345                147102 18 +    465904 ttagccggacgtggtggc
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=187369.000000
s hg38.chrX_KI270880v1_alt         64006 133 +    284869 gggtgcctgtaatcccagctactcgggaggctgaggcaggagactcacttgaactgcaggaggtggaggttgtagtgagccgaaattgcgtcattgcactgcagcctgggcaacaagagtgaaactccatctc
s panTro5.chrX                    184269 132 + 155549662 aggtgcctgtaatcccagctactcgggaggctgaggcaggagactcacttgaactgcaggaggtggaggttgtggtgagccgaaatcgcgtcattgcactgcagcctgggcgacaagagcgaaactccatct-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          132218 133 +    417917 gggtgcctgtcatcccagctactcgggaagctgaggcaggagactcacttgaacttcaggaggtggaggttgtagtgagccaagatcgcgccattgcactgcagcctgggcaacaagagtgaaacaccatctc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022842 133 - 149150640 gggcacctgtagtcccagctgcctgggaggctgaggcaggagaatcatctgaactgcagcaggtggaggttacagggagctgagactgtgacattgcatcacagcctgggagacaagagcgaaactccacctc
i rheMac8.chrX                 C 0 I 1
s macNem1.NW_012017243v1          176897 133 +  25972781 aggcacctgtagtcccagctgcctgggaggctgaggcaggagaatcatctgaactgcagcaggtggaggttacagggagctgagactgtgacattgcaccacagcctgggagacaagagcgaaactccatctc
i macNem1.NW_012017243v1       C 0 I 1
s manLeu1.NW_012108508v1           36721 133 -    350446 gggcacctgtagtcccagctgcctgggaggctgaggccggagaatcatctgaactgcagcaggtggcggttacagggagctgagactgtgacattgcaccacagcctgggagacaagagcgaaactccacctc
i manLeu1.NW_012108508v1       C 0 I 1
s saiBol1.JH378345                147120 126 +    465904 acgcgcctgtcatccaagctacgtgggaggctgaggcaggagaatcgtttgaactggaggaggtggaggtggcagtgagccgagatcagagcagtgcgttccagcctgggtgacacgag-----ctccatc--
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e macFas5.chr7                 171702270 120 - 171882078 I
e panPan2.chrUn_NW_014024225v1    100426 2968 +    105888 I

a score=39346.000000
s hg38.chrX_KI270880v1_alt         64139 36 +    284869 aaaaaaaaaaaaaaaaaaaaaaaaaGCAGCTCATCC
s panTro5.chrX                    184401 36 + 155549662 gaaaaaaaaaaaaaaaaaaaaaaaGGCAGCTCATCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    103394 36 +    105888 aaaaaaaaaaaaaaaaaaaaaaagaaCAGCTCATCC
i panPan2.chrUn_NW_014024225v1 I 2968 C 0
s gorGor5.CYUI01015925v1          132351 35 +    417917 -aaaaaaaaaaaaaaaaaaaaaaaGGCAGCTCATCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149022976 36 - 149150640 aaaaaaaaaaaaaaaaaaaaaaaaGGCAGGTCATCG
i rheMac8.chrX                 I 1 C 0
s macNem1.NW_012017243v1          177031 23 +  25972781 aaaaaaaaaaaa-------------GCAGGTCATCA
i macNem1.NW_012017243v1       I 1 C 0
s manLeu1.NW_012108508v1           36855 22 -    350446 aaaaaaaaaaa--------------GCAGGTCATCG
i manLeu1.NW_012108508v1       I 1 C 0
s saiBol1.JH378345                147246 29 +    465904 ------aaaaataaatcagtaaataaaaGTTCATC-
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e macFas5.chr7                 171702270 120 - 171882078 I

a score=1452543.000000
s hg38.chrX_KI270880v1_alt         64175 531 +    284869 ACATGAGGTTCTTAATTCCCCTTGTAAGAACTTACTTTAAAGATGCAT-TTAGGGTCCCCCCTAGCAGAAGCACCCTGGCTTGCAGCATCAGCCCATCGATACTGGCGttttctttctttttt---tttttt------------ttagagacagagtctcactttgttgccccggcgggagtgcactggcacaaacatagctcactgcagcctcgaactcctgggatcttcctgcctcagcctcacaagcagctgagacttcaggcatgaaccaccatgcctggctgattttactattttacagagatgggggagtctcgctatgttgcccaggctgggctcaaactcctggcctcaagggatcctccctccttggcctcccaaagtgctgggattgagccactgcacccggccAATGCTCACATTTTCTAATTTGTACCA---GTTTCTCTTCCCCAAAGACGGGAAGGAGCCACTGCAAGCACCCCTTTCAAACACAGAATGCAATCTCTCTGCTCAGTAACGATGAAGGCGTAGGTAACGTAAAACA----------------------------------------------
s panTro5.chrX                    184437 543 + 155549662 ACATGAGGTTCTTACTTCCCCTTGTAAGAACTTACTTTAAAGATGCAC-TTAGGGTCCCCCCTAGCAGAAGCACCCTGGCTTGCAGCATCAGCCCATCGATACTGGCGttttctttttttttt---ctttttctttttctttttttagagacagggtctcactttgttgccccagtgggagtgcactggcacaaacatagctcactgcagcctcgaactcctgggatcttcctgcctcagcctcacaagcagctgagacttcaggcatgaaccaatatgcctggctgattttactattttatagagatgggggagtctcgctatgttgcccaggctgggctcaaattcctggcctcaagtgatcctccctcctcggcctcccaaagtgctgggattgagccactgcacccggccAATGCTCACATTTTCTAATTTGTACCA---GTTTCTCTTCCCCAAAGACGGGAAGGAGCCACTGCAAGCGCCCCTTTCAAACACAGAATGCAATCTCTCTGTTCAGTAACGATGAAGGCGTAGGTAACGTAAAACA----------------------------------------------
i panTro5.chrX                 C 0 I 60
s panPan2.chrUn_NW_014024225v1    103430 528 +    105888 ACATGAGGTTCTTACTTCCCCTTGTAAGAACTTACTTTAAAGATGCAT-TTAGGGTCCCCCCTAGCAGAAGCACCCTGGCTTGCAGCATCAGCCCATCGATACTGGCGttttctttctttttc---ttt---------------ttagagacagggtctcactttgttgccccggcgggagtgcactggcacaaacatagctcactgcagcctggaactcctgggatcctccggcctcagcctcacaagcagctgggacttcaggtatgaaccaccatgcctggctgattttactattttacagagatgggggagtctcgctatgttgcccaggctgggctcaaactcctggcctcaagggatcctccctcctcggcctcccaaagtgctgggattgagccactgcacccggccAATGCTCACATTTTCTAATTTGTACCA---GTTTCTCTTCCCCAAAGACGGGAAGGAGCCACTGCAAGCACCCCTTTCAAACACAGAATGCAATCTCTCTGCTCAGTAACGATGAAGGTGTAGGTAACGTAAAACA----------------------------------------------
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          132386 531 +    417917 ACATGAGGTTCTTACTTCCCCTTGTAAGAACTTACTTTAAAGATGCAT-TTAGGGTCCCCCCTAGCAGAAGCACCCTGGCTTGCAGCATCAGCCCATCGATACTGGCGttttctttttttttt---tttttttg----------ttagagacagggtctcactttgttgccccagcgggagtgcactggcacaaacatagctcactgcagcctcaaactcctgggatcttcctgcctcagcctcacaagcagctgagacttcaggcatgaaccaatatgcctggctgattttactattttatagagatgggggagtcttgctatattgcccaggctgggctcaaactcctggcctcaagtgatcct-cctcctcggcctcccaaagtgctgggattgagccactgcacccggccAATGCTCACA-TTTCTAATTTGTACCA---GTTTCTATTCCCCAAAGACGGGAAGGAGCCACTGCAAGCACCCCTTTCAAACACAGAATGCAATCTCTCTGTTCAGTAACGATGAAGGCGTAGGTAACATAAAACA----------------------------------------------
i gorGor5.CYUI01015925v1       C 0 I 60
s rheMac8.chrX                 149023012 537 - 149150640 ACATGAAGTTCTTACTTCCCCTTGTAACAACTTACTTTAAAGGTGCAT-TTAGGGTGCCCCC-AGCAGAAGCACCCTGGCTTGCATCATCAGCCCATCGATACTGGCATttcctttcctttcc--ttttttttttttt------ttagagacagggtctcactttgttgccccggcgggagtgcagtggcacagacatagctcactgcagcctcgaactcctgggaccctcctgcctcagcctcacaagcagctgggacttcaggcatgaaccaccatgcctggctgattttattattttatagacacgggggagtctcgctatgttgccca-gctgggcgcaaactcctggcctcaagtgatcctgcctcctcggcctcccaaagtgctgggattcagccaccgcacccggccAACGCTCACATTTTCTAATTTGTACAACGGG--TCTCTTCCCCAGAGATGGGAGGGAGCCATTGCAAGCACCGCTTTCAAACACACAGTGCAATCTCTCTGCTCAGGAGCGGTGAAGGTGCAGATGACGTAAAACA----------------------------------------------
i rheMac8.chrX                 C 0 I 60
s macFas5.chr7                 171702390 539 - 171882078 ACATGAAGTTCTTACTTCCCCTTGTAACAACTTACTTTAAAGGTGCAT-TTAGGGTGCCCCC-AGCAGAAGCACCCTGGCTTGCATCATCAGCCCATCGATACTGGCAtttcctttccttttc---tttttttttttt------ttagagacagggtctcactttgttgccccggcgggagtgcagtggcacagacatagctcactgcagcctcgaactcctgggaccctcctgcctcagcctcacaagcagctgggacttcaggcgtgaaccaccatgcctggctgattttattattttatagacacgggggagtctcgctatgttgcccaggctgggcgcaaactcctggcctcaagtgatcctccctcctcggcctcccaaagtgctgggattcagccaccgcacccggccAACGCTCACATTTTCTAATTTGTACGACGGGTCTCTCTTCCCTAGAGATGGGAGGGAGCCATTGCAAGCACCGCTTTCAAACACACAGTGCAATCTCTCTGCTCAGGAGCGGTGAAGGTGCAGATGACGTAAAACA----------------------------------------------
i macFas5.chr7                 I 120 I 60
s macNem1.NW_012017243v1          177054 539 +  25972781 ACATGAAGTTCTTACTTCCCCTTGTAACAACTTACTTTAAAGGTGCAT-TTAGGGTGCCCCC-AGCAGAAGCACCCTGGCTTGCATCATCAGCCCATCGATACTGGCAtttcctttccttttc---ttttcttttttt------ttagagacagggtctcactttgttgccccggcgggagtgcagtggcacagacatagctcactgcagcctcgaactcctgggaccctcctgcctcagcctcacaagcagctgggacttcaggcatgaaccaccatgcctggctgattttattattttatagacacgggggagtctcgctatgttgcccaggctgggcgcaaactcctggcctcaagtgatcctccctcctcggcctcccaaagtgctgggattcagccaccgcacccggccAACGCTCACATTTTCTAATTTGTACGACGGGTCTCTCTTCCCCAGAGATGGGAGGGAGCCATCGCAAGCACCGCTTTCAAACACACAGTGCAATCTCTCTGCTCAGGAACGGTGAAGGTGCAGATAACGTAAAACA----------------------------------------------
i macNem1.NW_012017243v1       C 0 I 43
s manLeu1.NW_012108508v1           36877 539 -    350446 ACATGAAATTCTTACTTCCCCTTGTAACAACTTACTTTAAAGGTGCAT-TTAGGGTGCCCCC-AGCAGAAGCACCCTGGCTTGCATCATCAGCCCATCGATACTGGCATTTCCtttccttttcttttttttttttttt------ttggagacagggtctcactttgttgccccggcgggagtgcagtggcacagacatagctgactgcagcctcgaactcctgggaccctcctgcctcagcctcacaagcagctgggacttcaggcatgaaccaccatgcttggctgattttattagtttatagacacgggggagtctcgctctgttgcccaggctgggcgcaaactcctgccctcaagtgatcctccctcctcggcctcccaaagtgctgggattcagtcactgcacccggccAATGCTCACATTTTCTAATTTGTACCA---GTTTCTCTTTCCCAGAGATGGGAGGGAGCCATTGCAAGCACCCCTTTCAAACACACAGTGCAATCTCTCTGCTCAGGAACGGTGAAGGTGCAGATAACGTAAAACA----------------------------------------------
i manLeu1.NW_012108508v1       C 0 I 62
s saiBol1.JH378345                147275 556 +    465904 ACATGAAGTTCCTGCTTTGCCTGGTACCGACTTACTTCGGAGGTGCGTGTTGGGGTCCCTGCGGGCAGAAGCACCCTGGCTT----CATGA-CCCATCAACACCGGCAttttttttttttttt---------------------ttagagacagggtcttgctttcttgtccccgtgggactgcaggggcacaaacacagcccactgcagcctcggactcct-ggatcctcctgcctcagcctcacaagcagccgggacttcgggcctgaaccaccagacctggctgatt-------attatagacatgggg--gtcttgctatgttgcccaggctgggctcgaactcccggcctgaagtcatcctcccgcctcggcctcctcaagttctgggattgagccactgcgcccggccGATGCTCCCA-TTTCCCATTTGCACCG---GTTTCTCTTCCCCAGAGACAGGAGGGAGTCGCCAGAAGCCCTCATCTCAAACACACGGTTCGAGCCGTCTGCTCAGGAAAGAGGAAGGCGTAGGTGCCGGACGTTATCGCTGGCCACGTCGGCTTTGCGTGTTACCACGCCACGTTTTCACA
i saiBol1.JH378345             C 0 I 6
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=59106.000000
s hg38.chrX_KI270880v1_alt         64706 28 +    284869 ATGCCGTTCCTTTCACCCTTGGCTGGGG
s panTro5.chrX                    185040 28 + 155549662 ATGCCGTTCCTTTCACCCTTGGCTGGGG
i panTro5.chrX                 I 60 C 0
s panPan2.chrUn_NW_014024225v1    103958 28 +    105888 ATGCCGTTCCTTTCACCCTTGGCTGGGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          132977 28 +    417917 ATGCCGTTCCTTTCACCCTTGACTGGGG
i gorGor5.CYUI01015925v1       I 60 C 0
s rheMac8.chrX                 149023609 28 - 149150640 ATGCCTTCCCTTTCACCTTTGCCTGGGG
i rheMac8.chrX                 I 60 C 0
s macFas5.chr7                 171702989 28 - 171882078 atgccttccctttcacctttgcctgggG
i macFas5.chr7                 I 60 C 0
s manLeu1.NW_012108508v1           37478 28 -    350446 ATGCCGTCCCTTTCACCCTTGCCTGGGG
i manLeu1.NW_012108508v1       I 62 C 0
s saiBol1.JH378345                147837 28 +    465904 ACGCCTTTCCTTTCTGCACTGGCTGGGG
i saiBol1.JH378345             I 6 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e macNem1.NW_012017243v1          177593 43 +  25972781 I

a score=255170.000000
s hg38.chrX_KI270880v1_alt         64734 97 +    284869 AGTTCAATGGACCTAGCGTGAACCCTCCTGACAGCTCATACTCCATTCTGTACATGTGTGGGTGAGAAAAAGCTGCTTTATTTATGAAAATCTCTTC
s panTro5.chrX                    185068 97 + 155549662 AGTTCAATGGACCTAGCGTGAACCCTCCTGACAGCTCATAGTCCATTCTCTACATGTGTGGGTGAGAAAAAGTTGCTTTATTTATGAAAATCTCTTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    103986 97 +    105888 AGTTCAATGGACCTAGCGTGACCCCTCCTGACAGCTCATACTCCATTCTGTACATGTGTGGGTGAGAAAAAGTTGCTTTATTTATGAAAATCTCTTC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133005 97 +    417917 AGTTCAATGGACCTAGCGTGAACCCTCCTGACAACTCATACTCCATTCTGTACATGTGTGGCTGAGAAAAAGCTGCTTTATTTATGAAAATCTCTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023637 97 - 149150640 AGTTCAACGGACCTAGAACAAACCCTCCCGACAGCTCATACCCAATCTTGGACCTGTGTGGGTGAGAAAAAGCTGTTTCATTTATGAAAATCTTTTC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171703017 97 - 171882078 AGTTCAACGGACCTAGAACAAACCCTCCCGACAGCTCATACCCAATCTTGGACCTGTGTGGGTGAGAAAAAGCTGTTTCATTTATGAAAATCTTTTC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          177636 97 +  25972781 AGTTCAACGGACCTAGAACAAACCTTCCCGACAGCTCATACCCAATCTTGGACCTGTGTGGGTGAGAAAAAGCTGTTTCATTTATGAAAATCTTTTC
i macNem1.NW_012017243v1       I 43 C 0
s manLeu1.NW_012108508v1           37506 96 -    350446 AGTTCAACGGACCTAGAACGAACCCTCCCGACAGCTCATACCCAATCTTGTACCTGTGT-GGTGAGAAAACGCTGTTTCATTTATGAAAATCTTTTC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                147865 97 +    465904 AGCTAAACGGACCCAGAGCGGACCCTCCTGACAGCTCACGCTCCATCCTGTACGTGTGTGAGTGAGAAAACGCTGTTGTATGTAGGAAAATCTCTCC
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt         64831 1 +    284869 C
s panTro5.chrX                    185165 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104083 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133102 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023734 1 - 149150640 C
i rheMac8.chrX                 C 0 I 7
s macFas5.chr7                 171703114 1 - 171882078 C
i macFas5.chr7                 C 0 I 1
s macNem1.NW_012017243v1          177733 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 I 7
s saiBol1.JH378345                147962 1 +    465904 C
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e manLeu1.NW_012108508v1           37602 0 -    350446 C
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=52940.000000
s hg38.chrX_KI270880v1_alt         64832 62 +    284869 TCTGACCCCAGCATCGCCCCTCCCCAGCCAGAGTTTGTAGCATGGAACTGCATCCTTCACTG
s panTro5.chrX                    185166 62 + 155549662 TCTGACCCCAGCATCGCCCCTCCCCAGCCAGAGTTTGTAGCATGGAACTGCATCCTTCACTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104084 62 +    105888 TCTGACCCCAGCATCGCCCCTCCCCAGCCAGAGTTTGTAGCATGGAACTGCATCCTTCACTG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133103 62 +    417917 TCTGACCCCAGCATCGCCCCTCCCCAGCCAGAGTTTGTAGCATGGAACTGCATCCTTCACTG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                147963 61 +    465904 TCTGACCCCAGGGTCGCCTCT-CCCAGCCTGAGTTTGTAGCATGGAACGGCACCCTTCATTG
i saiBol1.JH378345             C 0 I 121
e calJac3.chrY                     50203 292 +   2853901 I
e manLeu1.NW_012108508v1           37602  0 -    350446 C
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023735  7 - 149150640 I
e macNem1.NW_012017243v1          177734  7 +  25972781 I
e macFas5.chr7                 171703115  1 - 171882078 I

a score=184059.000000
s hg38.chrX_KI270880v1_alt         64894 360 +    284869 TTAACGTGGCCTCGCGTATTCTGTATATGGGATGGACAGGAACAAGCTCAtctttttttttttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctctgccacccaggttcatgccattctcctgcctcagcctccggagtagctgggactacaggcacccgccaccacgcccggctaattttctgtatctttagtagagacagggtttcactgtgttagccaagatggtctctatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggatcacaggcatgagccaccgtgcccagccCAAG
s panTro5.chrX                    185228 348 + 155549662 TTAACGTGGCCTTGCGTATTCTGTATATGGGATGGACAGGAACAAGC------------ttttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgcaggggcgcaatctcagctcactgcaagctctgccacccaggttcacgccattctcctgcctcagcctccggagtagctgggactacaggtacccgccaccatgcccggctaattttctgtatctttagtagagaaagggtttcactgtgttagccaagatggtctctatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggatcacaggcatgagccaccgtgcccagccCAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104146 347 +    105888 TTAACGTGGCCTCGCATATTCTGTATATGGGATGGACAGGAACAAGC------------ttttttttttttttttt-gacagagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaagctccgccacccaggttcatgccattctcctgcctcagcctccggagtagctgggactacaggcacgcgccaccacgcccggctaattttctgtatctttagtagagacagggtttcactgtgttagccaagatggtctctatctcctgaccttgtgatccgctcgcctcggcctcccaaagtgctgggatcacaggcatgagccaccgtgcccagccCAAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133165 354 +    417917 TTAAAGTGACCTCGCATATTCTGTATATGGGATGGACAGGAACAAGCTCAtcttt----ttttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctccgccacccaggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcacccgccaccacacccggctaattttctgtatctttagtaaagac-gggtttcactgtgttagccaagatggtctctatctcctgaccttgtgatcc-cccgcctcggcctcccaaagtgctgggatcacaggcatgagccaccgtgcccagcGCAAG
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e manLeu1.NW_012108508v1           37602   0 -    350446 C
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023735   7 - 149150640 I
e macNem1.NW_012017243v1          177734   7 +  25972781 I
e macFas5.chr7                 171703115   1 - 171882078 I

a score=1910.000000
s hg38.chrX_KI270880v1_alt         65254 2 +    284869 CT
s panTro5.chrX                    185576 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104493 2 +    105888 CT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133519 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1           37602 2 -    350446 CT
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023735 7 - 149150640 I
e macNem1.NW_012017243v1          177734 7 +  25972781 I
e macFas5.chr7                 171703115 1 - 171882078 I

a score=6526.000000
s hg38.chrX_KI270880v1_alt         65256 6 +    284869 CATCTT
s panTro5.chrX                    185578 6 + 155549662 CATCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104495 6 +    105888 CATCTT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133521 6 +    417917 CATCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171703116 6 - 171882078 CATCCC
i macFas5.chr7                 I 1 C 0
s manLeu1.NW_012108508v1           37604 6 -    350446 CATCCC
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023735 7 - 149150640 I
e macNem1.NW_012017243v1          177734 7 +  25972781 I

a score=116004.000000
s hg38.chrX_KI270880v1_alt         65262 45 +    284869 TTTTGTCCCAATGAACAGACACATCTTTCTAAGTTATTCACTTCT
s panTro5.chrX                    185584 45 + 155549662 TTTTGTCCCAATGAACAGACACATCCTTCTAAGTTATTCACTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104501 45 +    105888 TTTTGTCCCAATGAACAGACACATCCTTCTAAGTTATTCACTTCT
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133527 45 +    417917 TTTTGTCCCAATGAACAGACACGTCCTTCTAAGTTATTCACTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023742 45 - 149150640 TTTTGTCCCAATGAACAGACACATCCTTCTAAGTTATTCACTTCT
i rheMac8.chrX                 I 7 C 0
s macFas5.chr7                 171703122 45 - 171882078 TTTTGTCCCAATGAACAGACACATCCTTCTAAGTTATTCACTTCT
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          177741 45 +  25972781 TTTTGTCCCAATGAACAGACACATCCTTCTAAGTTATTCACTTCT
i macNem1.NW_012017243v1       I 7 I 88
s manLeu1.NW_012108508v1           37610 45 -    350446 TTTTGTCCCAATGAACAGACACATTCTTCTAAGTTATTCACTTCT
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=2865.000000
s hg38.chrX_KI270880v1_alt         65307 2 +    284869 TG
s panTro5.chrX                    185629 2 + 155549662 TG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104546 2 +    105888 TG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133572 2 +    417917 TG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023787 2 - 149150640 TG
i rheMac8.chrX                 C 0 I 110
s manLeu1.NW_012108508v1           37655 2 -    350446 TG
i manLeu1.NW_012108508v1       C 0 I 26
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I
e macFas5.chr7                 171703167 0 - 171882078 C

a score=4137.000000
s hg38.chrX_KI270880v1_alt         65309 8 +    284869 AGATTCAG
s panTro5.chrX                    185631 8 + 155549662 AGATTCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104548 8 +    105888 AGATTTAG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133574 8 +    417917 AGATTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e manLeu1.NW_012108508v1           37657 26 -    350446 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023789 110 - 149150640 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I
e macFas5.chr7                 171703167 0 - 171882078 C

a score=47976.000000
s hg38.chrX_KI270880v1_alt         65317 40 +    284869 CTGAAGTAAGCCATAGGTTCCAAACACGTAGACATGTTTA
s panTro5.chrX                    185639 40 + 155549662 CTGAAGTAAGCCATAGGTTCCAAACACGTAGACATGTTTA
i panTro5.chrX                 C 0 I 4362
s panPan2.chrUn_NW_014024225v1    104556 40 +    105888 CTGAAGTAAGCCATAGGTTCCAAACACGTAGACATGTTTA
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133582 40 +    417917 CTGAAGTAAGCCATAGGTTCCAAACACGTAGACGTGCTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171703167 38 - 171882078 --GAAGTAAGCCATGGGTCCCAAACAGGAAGACACGTTTA
i macFas5.chr7                 C 0 C 0
s manLeu1.NW_012108508v1           37683 40 -    350446 CTGAAGTAAGCCACAGGTCCCAAACAGGAAGACATGTTTA
i manLeu1.NW_012108508v1       I 26 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023789 110 - 149150640 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I

a score=33341.000000
s hg38.chrX_KI270880v1_alt         65357 34 +    284869 AGGTAAACTTTTAGTCCCAAACAAGGTCAGTCAC
s panTro5.chrX                 155359820 34 - 155549662 AGGCAAACTTTTAGTCCCAAACAAGGTCAGTCAC
i panTro5.chrX                 T 35763 C 0
s panPan2.chrUn_NW_014024225v1    104596 30 +    105888 AGGCAAACTTTTAGTCCCAAACAAG----GTCAC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133622 34 +    417917 AGGCCAACTTTTAGTCCCAAACAAGGTCAGTCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171703205 34 - 171882078 AAGCAAACCTGAGGTCCCAGACAAGCTCAGTCAC
i macFas5.chr7                 C 0 C 0
s manLeu1.NW_012108508v1           37723 34 -    350446 AAGCAAACTTGAGGTCCCGGACAAGCTCAGTCAC
i manLeu1.NW_012108508v1       C 0 I 308
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023789 110 - 149150640 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I

a score=180.000000
s hg38.chrX_KI270880v1_alt         65391 1 +    284869 T
s panTro5.chrX                 155359854 1 - 155549662 T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104626 1 +    105888 C
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133656 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e manLeu1.NW_012108508v1           37757 308 -    350446 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023789 110 - 149150640 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I
e macFas5.chr7                 171703239 0 - 171882078 C

a score=53599.000000
s hg38.chrX_KI270880v1_alt         65392 68 +    284869 GCTTTTTGAAAATTCTTGCCATCTCCTAAGTGCAGAATCCTGCACCCTGCACACCCTGGCCGCCATGC
s panTro5.chrX                 155359855 68 - 155549662 GCTTTTTGAAAATTCTTGCCATCTCCTAAGTGCAGAATCCTGCACCCTGCACACCCCGGCTGCCACGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104627 68 +    105888 GCTTTTTGAAAATTCTTGCCATCTCCTAAGTGCAGAATCCTGCACCCTGCACACCCCGGCCGCCACGC
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133657 68 +    417917 GCTTTTTGAAATTCTTTGCCATCTCCTAAGTGCAGAATCGTGCACCCTGCACACCCCGGCCGCCACGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chr7                 171703239 11 - 171882078 ---------------------------------------------------------GGCCGCCACGC
i macFas5.chr7                 C 0 C 0
s manLeu1.NW_012108508v1           38065 68 -    350446 GCTTTCTGAAAACTCTTGGCATCTCCTAAGTGCAGAATCCGGCCCCCTGCGCACCCCGGCCGCCACGC
i manLeu1.NW_012108508v1       I 308 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e rheMac8.chrX                 149023789 110 - 149150640 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I

a score=3013.000000
s hg38.chrX_KI270880v1_alt         65460 6 +    284869 -CCACGG
s panTro5.chrX                 155359923 5 - 155549662 -C-ACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104695 6 +    105888 -CCACGG
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133725 5 +    417917 -C-ACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023899 6 - 149150640 CC-ACGA
i rheMac8.chrX                 I 110 C 0
s macFas5.chr7                 171703250 5 - 171882078 -C-ATGA
i macFas5.chr7                 C 0 C 0
s manLeu1.NW_012108508v1           38133 5 -    350446 -C-ATGA
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I
e macNem1.NW_012017243v1          177786 88 +  25972781 I

a score=386598.000000
s hg38.chrX_KI270880v1_alt         65466 188 +    284869 TCCACACGCATCCTTCCTTCTGCTTCTCCGGTCAGACCACTCCAGTCCCTCAACGTGACCTGAACATCTCAtctttttttttcttttttttttttttttgagacagagtgtctcactcttgtcacccaggctggagtgcagtggcacaatttcagctcactgcaatctccgcctcccaggttcaagtg
s panTro5.chrX                 155359928 185 - 155549662 TCCACACGCGTCCTTCCTTCTGCTTctccggtcagaccactccagttgctcaacgtgacctgaacatctcgtcttttttttt---ttttttttttttttgagacagagtgtctcactcttgtcacccaggctggagtgcagtggcacaatttcagctcactgcaatctctgcctcccaggttcaagtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104701 170 +    105888 TCCACACGCGTCCTTCCTTCTGCTTctccggtcagaccactccagtccctcaacgtgacctgaacat------------------ctttttttttttttgagacagagtgtctcactcttgtcacccaggctggagtgcagtggcacaatttcagctcactgcaatctccgcctcccaggttcaagtg
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133730 178 +    417917 TCCACACGCGTCCTTCCTTCTGCTTctccggtcagaccactccagtcgctcaacgtgacctgaacatctcttctt----------ttttttttttttttgagacagagtgtctcactcttgtcacccaggctggagtgcagtggcacaatttcagctcactgcaatctccacctcccaggttcaagtg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149023905 185 - 149150640 TCCACACGCATCCTTCCTTCTGCTTCTCTCGTTAGACCACTCCAGTCGCTCAACACGACCTGAACATCTTACCCtttttcttttttttttcttttttttgagacagagtctctctctgttgt---ccaggctggggtgcagtggtgtaatgtcggctcactgtaacctctgcctcccgggttcaagtg
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171703255 185 - 171882078 TCCACACGCATCCTTCCTTCTGCTTCTCTCGTTAGACCACTCCAGTCGCTCAACACGACCTGAACATCTTACCCtttttcttttttttttcttttttttgagacagagtctctctctgttgt---ccaggctggggtgcagtggtgtaatgtcggctcactgtaacctctgcctcccgggttcaagtg
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          177874 185 +  25972781 TCCACACGCATCCTTCCTTCTGCTTCTCTCGTTAGACCACTCCAGTCGCTCAACACGACCTGAACATCTTACCCtttttcttttttttttcttttttttgagacagagtctctctctgttgt---ccaggctggggtgcagtggtgtaatgtcggctcactgtaacctctgcctcccgggttcaagtg
i macNem1.NW_012017243v1       I 88 C 0
s manLeu1.NW_012108508v1           38138 174 -    350446 TCCACACGCATCCTTCCTTCTGCTTCTCCCGTTAGACCACTCCAGTCGCTCAACACGACCTGAACAtct-----------ttttttttttcttttttttgagacagagtctctctctgttgt---ccaggccggagtgcagtggtgtaatgtcggctcactgtaacctctgcctcccgggttcaagtg
i manLeu1.NW_012108508v1       C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e saiBol1.JH378345                148024 121 +    465904 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=311879.000000
s hg38.chrX_KI270880v1_alt         65654 112 +    284869 attctcctgcctcagcctccagagtagctgggattacaggtgcccaccaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggttga
s panTro5.chrX                 155360113 112 - 155549662 attctcctgcctcagcctccagagtagctgggattacaggtgcccaccaccacacccagctaatttttgtatttttaatagagacggggtttcaccatgttggccaggttga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104871 112 +    105888 attctcctgcctcagcctccagagtagctgggattacaggtgcccaccaccacgcccagctaatttctgtatttttagtagagacggggtttcaccatgttggccaggttga
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          133908 111 +    417917 attctcctgcctcagcctccagagtagctgggattacaggtgcccaccaccacacccagctaatttttgta-ttttagtagagacggggtttcaccatgttggccaggttga
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149024090 112 - 149150640 attctcctgcctcagcctcctgagtagctgggattacaggcacgcaccaccatgcctggctcatttttgtatttttggtgcagatggggtttcaccgtgttggccaggctgg
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171703440 112 - 171882078 attctcctgcctcagcctcctgagtagctaggattacaggcacgcaccaccatgcctggctcatttttgtatttttggtgcagatggggtttcaccgtgttggccaggctgg
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          178059 112 +  25972781 attctcctacctcagcctcctgagtagctaggattacaggcacgcaccaccatgcctggctcatttttgtatttttggtgcagatggggtttcaccgtgttggccaggctgg
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1           38312 112 -    350446 attctcctacctcagcctcccgaggagctaggattacaggcgcccgccaccacgcccggctaatgtttgtatttttggtacagatggggtttcaccgtgttggccaggctgg
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                148145 112 +    465904 attctcctgcctcagcctcctgagtagctgggactacaggcacgcgccaccatgcccagctaattattgtatttttactagagacggggtttccccaggttggccaggaggg
i saiBol1.JH378345             I 121 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e chlSab2.chrUn_KE147541v1        118298 10627 -    811265 T
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=475210.000000
s hg38.chrX_KI270880v1_alt         65766 122 +    284869 tctcgaactcctgacctcaggtgatccgtccacctcagcctcccaaagtgctaggaattcaggtgtgag-----cgactgagcctggtcTCATTTTCAC-----------------------------CGCCTCCCTTGGTCCTGC-CCCCTATACC
s panTro5.chrX                 155360225 148 - 155549662 tctcgaactcctgacctcaggtgatccgtccacctcagcctcccaaagtgctgggattacaggcgtgag-----cgactgagcctggtctcattttcacactct---gcccgtcatccctcccagaatggcctcccttggtcccgc-cccccatacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    104983 146 +    105888 tctcaaactcctgacctcaggtgatccgtccacctcagcctcccaaagtgctaggattacaggtgtgag-----tgactgagcctggtctcattttcac--act---gcccgtcatccctcccagaatggcctcccttggtcccgc-cccctatacc
i panPan2.chrUn_NW_014024225v1 C 0 C 0
s gorGor5.CYUI01015925v1          134019 147 +    417917 tctcgaactcctgacctcaggtgatccgtccacctcagcctcccaaagtgctgggattacaggcgtgag-----cgactgagcctggtctcattttcacactct---g-ctgtcatccctcccagaatagcctccctcggttccgc-cccctatacc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149024202 149 - 149150640 tcttgaactcctgacctcaggtgatccacccgcctaagcctcccaaagtgctaggattacaggcatgag-----cgactgtgcctggtcTCATTTTCACACTCT---GCCCGTCATCCCTCCTGGAGCGGCCTCCCTTGGTCCTGCCCCCCCATACC
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171703552 149 - 171882078 tcttgaactcctgacctcaggtgatccacccgcctaagcctcccaaagtgctaggatgacaggcatgag-----cgactgtgcctggtcTCATTTTCACACTCT---GCCCGTCATCCCTCCTGGAGCGGCCTCCCTTGGTCCTGCCCCCCCATACC
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          178171 149 +  25972781 tcttgaactcctgacctcaggtgatccacccgcctaagcctcccaaagtgctgggatgacaggcatgag-----cgactgtgcctggtcTCATTTTCACACTCT---GCCCGTCATCCCTCCTGGAGCGGCCTCCCTTGGTCCTGCCCCCCCATACC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107671 148 -    811265 tcttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgag-----cgactgtgcctggtcTCATTTTCACACTCT---GCCCGTCATCCGTCCTGGAACAGCCTCCCTTGGTCCCGT-CCCCCATACC
i chlSab2.chrUn_KE147541v1     T 10627 C 0
s manLeu1.NW_012108508v1           38424 146 -    350446 tcttgaactcctgacctcaggtgatccaccc------gcctcccaaagtgctgggattacaggcgtgag-----cgactgtgcctagtcTCATTTTCACACTCTGCCGCCCGTCATCTCTCCTGGAGCGGCCTCCCTTGGTCCCGTCCCCCCGTACC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                148257 153 +    465904 tctcgaactcctgacctcaggcgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgagtcagtccacttcgcccagccTCATCTTCACACTCT---GCCCGTCGTCCGTCCCAAAATGGCCTCCCTTGCTCCGGT-GCCCCATACC
i saiBol1.JH378345             C 0 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e otoGar3.GL873584                108739 1564 +  11138919 I
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=823961.000000
s hg38.chrX_KI270880v1_alt         65888 277 +    284869 CAATAAACTCAGTGCATTTCTCAAGTTCCACTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAAATGATGTCTCCCTGCTTTGAACACCTTTGGAACTTAATTTCCACTTGTTAGAGGCTTCTTGCCTGATTTACAGAATATATCATCCTCTCACATGCACCCAAATGGCCTCGTTTGCACAGACCTGA-CCTTCCGTCAATATTCCCAGCCCTAGGAGAATTCATGCAAAGTCACAATA--------------------------------------------------------------------------GTCCCAGCCCTAGGAGAATTCTTGCAAAGTCACA------
s panTro5.chrX                 155360373 314 - 155549662 caataaactcagtgcatttctcaagttccactactcacttcctcctcaaaactttctcc-aggagagaaatgatgtctccctgctttgaacacctttggaacttaATTTCCACTTGTTAGAGGCTTCTTGCCTGATTTACAGAATATATCATCCTCTCACATGCACCCAAATGGCCTCGTTTGCACAGACCTGA-CCTTCCGTCAATATTCCCAGCCCTAGGAGAATTCATGCAAAGTCACAATA-------------------------------------CTCCCAGCCCTAGGAGAATTCATGCAAAGTCACAATAGTCCCAGCCCTAGGAGAATTCTTGCAAAGTCACA------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024225v1    105129 351 +    105888 caataaactcagtgcatttctcaagttccactactcacttcctcctcaaaactttctcc-aggagagaaatgatgtctccctgctttgaacacctttggaacttaatttcCACTTGTTAGAGGCTTCTTGCCTGATTGACAGAACACATCATCCTCTCACATGCACCCAAATGGCCTCGTTTGCACAGACCTGA-CCTTCCGTCAATATTCCCAGCCCTAGGAGAATTCATGCAAAGTCACAATAGTACCAGCCCTAGGAGAACTCATGCAAAGTCATAATACTCCCAGCCCTAGGAGAACTCATGCAAAGTCACAATAGTCCCAGCCCTAGGAGAATTCTTGCAAAGTCACA------
i panPan2.chrUn_NW_014024225v1 C 0 N 0
s gorGor5.CYUI01015925v1          134166 236 +    417917 caataaactcagtgcatttctcaagttccactactcacttcctcctcaaaactttctcc-aggagagaaatgatgtctccctgctttgaacacctctggaacttaATTTCCACTTGTTAGAGGCTTCTTGCCTGATTTACAGAATGTATCATCCTCTCACAAGCACCCAAAT-GCCTCGTTTGCACAGACCTGA-CCTTCCGTCAATAGT-CCAGCCCTAGGAGAATTCTTGC-AAGTCAC----------------------------------------------------------------------------------------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 149024351 242 - 149150640 CAATAAACTCAGTGCATTTCCCAAGTCCCGCTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAAACGACCTCTCCCTGCTGTGAACACCTTCGGAACTTAATTTCCTCTTGTTAGAGGCTTGTTGCCCGATGTACAGAATGTATCATCTTTTCCCATGCACCCAGACGGCCTTGTTTGCACAGACCTGA-CCTTCTGTCGATATTCCCAGCCGTAGGAGAATTCATGCAAAGTCACAAC-------------------------------------------------------------------------------------------------------------------
i rheMac8.chrX                 C 0 C 0
s macFas5.chr7                 171703701 242 - 171882078 CAATAAACTCAGTGCATTTCCCAAGTCCCGCTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAAACGACCTCTCCCTGCTGTGAACACCTTCGGAACTTAATTTCCTCTTGTTAGAGGCTTGTTGCCCGATGTACAGAATGTATCATCTTTTCCCATGCACCCAGATGGCCTTGTTTGCACAGACCTGA-CCTTCTGTCGATATTCCCAGCCGTAGGAGAATTCATGCAAAGTCACAAC-------------------------------------------------------------------------------------------------------------------
i macFas5.chr7                 C 0 C 0
s macNem1.NW_012017243v1          178320 242 +  25972781 CAATAAACTCAGTGCATTTCCCAAGTCCCGCTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAAACGGCCTCTCCCTGCTGTGAACACCTTCGGAACTTAATTTCCTCTCGTTAGAGGCTTGTTGCCCGATGTACAGAATGTATCATCTTTTCCCATGCACCCAGATGGCCTTGTTTGCACAGACCTGA-CCTTCTGTCGATATTCCCAGCCGTAGGAGAATTCATGCAAAGTCACAAC-------------------------------------------------------------------------------------------------------------------
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        107819 242 -    811265 CAATAAACTCAGTGCATTTCCCAAGTCCCACTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAACTGACCTCTCCCTGCTGTGAACACCTTCGGAACTTCATTTCCTCTTGTTAGAGGCTTGTTACCCGAGTTACAGAATATATCATCTTTTCCCATGCACCCAGATGGCCTTGTTTGCACAGACCTGA-CCTTCCGTCGATATTCCCAGCCCTAGGAGAATTCACGCAAAGTCACAAC-------------------------------------------------------------------------------------------------------------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           38570 241 -    350446 CAATAAACTCAGTGCATTTCCCAAGTCCCGCTACTCACTTCCTCCTCAAAACTTTCTCC-AGGAGAGAACTGACCTCTCCCTGCTGTGAACACCTTT-GAACTTCATTTCCTCTTGTTAGAGGCTTGTTACCCGATGTACAGAATATATCATCTTTTCCCATGCACCCAGATGGCCTTGTTTGCACAGACCTGA-CCTTCCGTCGATACTCCCAGCCGTAGGAGAATTCATGCAAAGTCACAGC-------------------------------------------------------------------------------------------------------------------
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                148410 213 +    465904 CAGTAAACTCAGTGGATTTCC--------------CACTTCCTCCTTAAAACGGTCTCCAAGGAGAGGAGGGACGTCTCCCTGGGTTGAACACCTTTGGAACCTAATTCTCAC---------------TGCCTGGTTGATGGAATACATAACCTTTTCACATGCACCCCGGTTGCCCTGTTTGCACAAACCCGA-CCTTCGGTCAATATTCCCAGACCTGGGAGAATTTGTGCAGCGCCACGA--------------------------------------------------------------------------------------------------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                110303 223 +  11138919 CAATAGATTCAGC-CATTCCTC-AGTCCTACAACTGACTTCTTCCTCAAATCTTATTCCAAGGAGGGAAACGACCTCTCCCTGCCCTGAATATCTTATGAACTTAATTTCCACATG--AGCTGCTTATGGCC----------------------TTTCATATGCACCTAACT-GCCTACCTTGCACAGAGCTGATCCTTCTGTGAGTATTTCCAGTGCTAAGGGAATTCACACAAAGTCACAGG-------------------------------------------------------------------------------------------------------------GTCAGG
i otoGar3.GL873584             I 1564 C 0
e calJac3.chrY                     50203 292 +   2853901 I
e cebCap1.NW_016107987v1          215508 3172 -    735872 I
e cerAty1.NW_012001098v1          127326 1054 -   1025902 I
e colAng1.NW_012115411v1          193280 3465 +   1230721 I

a score=194446.000000
s hg38.chrX_KI270880v1_alt     66165 67 +    284869 CAATTCAAGCATTTACCTTAGC-----GTCTGGC----TGTCATTCAACACGTTTAAGGACAAAATGGCAGCTCAT
s panTro5.chrX             155360687 67 - 155549662 CAATTCAAGCATTTACCTTAGC-----ATCTGGC----TGTCATTCAACACGTTTAAGGACAAAATGGCAGCTCAT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134402 66 +    417917 CAATTCAAGCATTTACCTTAGC-----GTCTGGC----TGTCATTCAACACGTTTAAGGA-AAAATGGCAGCTCAT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149024593 65 - 149150640 --ATTCAAGCATTTACCTTAGT-----GTCTGGC----TGTCATTCAACACGTTTAACGACAAAATGGCAGCTCAT
i rheMac8.chrX             C 0 I 17
s macFas5.chr7             171703943 65 - 171882078 --ATTCAAGCATTTACCTTAGT-----GTCTGGC----TGTCATTCAACACGTTTAACGACAAAATGGCAGCTCAT
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      178562 65 +  25972781 --ATTCAAGCATTTACCTTAGT-----GTCTGGC----TGTCATTCAACACGTTTAACGACAAAATGGCAGCTCAT
i macNem1.NW_012017243v1   C 0 I 20
s chlSab2.chrUn_KE147541v1    108061 65 -    811265 --ATTCAAGCATTTACCTTAGA-----GTCTGGC----TGTCATTCAACACGTTTAATGACAAAATGGCAGCTCAT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       38811 65 -    350446 --ATTCAAGCATTTACCTTAGT-----GTCTGGC----TGTCATTCAACACGTTTAATGACAAAATGGCAGCTCAT
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148623 58 +    465904 -GATTCGAGCGTCTGCCTT-------------TC----CGTCATTCGGCACGTGTAATGATAAAACGGCAGCTCCT
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            110526 74 +  11138919 --AAATATGAGTTTACCTCAGAGCAGGGCCTGGCTTTGTGTCATGGAACACATTTAATGACAAAGTGGCAGCTGGC
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=7420.000000
s hg38.chrX_KI270880v1_alt     66232 7 +    284869 TAGCGAT
s panTro5.chrX             155360754 7 - 155549662 TAGCGAT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134468 7 +    417917 TAGCGAT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chr7             171704008 5 - 171882078 CGGCA--
i macFas5.chr7             C 0 C 0
s chlSab2.chrUn_KE147541v1    108126 7 -    811265 CGGCAAT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       38876 7 -    350446 CGGCAAT
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148681 7 +    465904 CAGCGAC
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            110600 7 +  11138919 TGGCAAT
i otoGar3.GL873584         C 0 I 491
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149024658 17 - 149150640 I
e macNem1.NW_012017243v1      178627 20 +  25972781 I

a score=21071.000000
s hg38.chrX_KI270880v1_alt     66239 15 +    284869 CCCACTGAGAAAGCA
s panTro5.chrX             155360761 15 - 155549662 CCCACTGAGAAAGCA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134475 15 +    417917 CCCACTGAGAAAGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chr7             171704013 12 - 171882078 ---ACCGGGAGAGCA
i macFas5.chr7             C 0 C 0
s chlSab2.chrUn_KE147541v1    108133 15 -    811265 CCCACTGAGGAAGCA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       38883 15 -    350446 CCCACTGAGGAAGGA
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148688 15 +    465904 CCCAGGGAGAAACAG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            111098 15 +  11138919 CCCAGTGACAAGGAA
i otoGar3.GL873584         I 491 C 0
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149024658 17 - 149150640 I
e macNem1.NW_012017243v1      178627 20 +  25972781 I

a score=128533.000000
s hg38.chrX_KI270880v1_alt     66254 134 +    284869 AGTCATGGAG---GGG---------------------------------------------------------------------------------------------AACCATCATTACTAGCACATGCTTCTTGAGTCCTGGCCCTCCTCTCA------ACCTCCTCAGT-AAATGAGGGATTTGGGCAAGAGTTCCTAAGGTGCTTCAGGTTTTGCAGCTCACTGGGAAAGTG
s panTro5.chrX             155360776 140 - 155549662 AGCCATGGAG---GGG---------------------------------------------------------------------------------------------AACCATCATTACTAGCACACGCTTCTTGAGTCCTGGCCCTCCTCTCACATACAACCTCCTCAGT-AAATGAGGGATTTGGGCAAGAGTTCTTAAGGTGCTTCAGGTTTTGCAGCTCactgggaaagtg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134490 234 +    417917 AGCCATTGAG---GGGAACCATCATTAGTAGCACATGCTTCTTGATCCTGGCCCTCCTCTCACATACAACCTCCTCCGTAAATGAGGGATTTGCAGAAGCCATGGAGGGAACCATCATTAGTAGCACATGCTTCTTGAGTCCTGGCCCTCCTCTCACATACAAcctcctcagtaaaatgagggatttgggcaagagttcctaaggtgcttcaggttttgCAGCTTACTGGGAAAGTG
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    108148 140 -    811265 AGCCGTGGAG---GGGA--------------------------------------------------------------------------------------------AACCACCATCACGAGGGCACGCTTCTTGAGTCCTGGCCCTCTCCTCACATACAACTTCCTCAGT-AAATGAGGGATGTGGGCAAGACTTCCTAAGGTGC-TCAGGTTTTGCAGCTCACCGGGAAAGTG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       38898 140 -    350446 AGCCGTGGAG---GGGA--------------------------------------------------------------------------------------------AGCCATCATGACGAGGGCATGCTCCTTGAGTCCTGGTCCTCCCCTCACATACAACTTCCTCAGT-AAATGAGGGACGTGGGCAAGACTTCCTAAGGTGC-TTAGGTTTTTCAGCTCACCGGGAAAGTG
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148703 140 +    465904 TGTCATGGAG---ACGA--------------------------------------------------------------------------------------------AAGCATCGTGACGCGCCCACGCTTGCAGGGTCCTGGCTCTCCGCTCACATACGGTTTCCTCAGT-AAAGGAGGCATTTCGGCAAGACTTCCCGAGGTGC-TACGGGTTCACAGCTCGCCAGGAACGTG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            111113 113 +  11138919 AGTCATGTAGTTAGGG---------------------------------------------------------------------------------------------AACTGCTGTCACTAGGGCACCCTTCCTGAGCCCTTACACT---CTCACATCCTGCTGCCCCAGT-AAA-------------------------AAGCAC-TATAATTCTGCAGCTTA-TGGGAAGGTG
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149024658  17 - 149150640 I
e macNem1.NW_012017243v1      178627  20 +  25972781 I
e macFas5.chr7             171704025   0 - 171882078 C

a score=2286.000000
s hg38.chrX_KI270880v1_alt     66388 3 +    284869 CAC
s panTro5.chrX             155360916 3 - 155549662 gac
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134724 3 +    417917 CAT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149024675 3 - 149150640 CAC
i rheMac8.chrX             I 17 C 0
s macFas5.chr7             171704025 3 - 171882078 CAT
i macFas5.chr7             C 0 C 0
s chlSab2.chrUn_KE147541v1    108288 3 -    811265 CAT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       39038 3 -    350446 CAC
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148843 2 +    465904 CA-
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            111226 3 +  11138919 CAT
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      178627 20 +  25972781 I

a score=839303.000000
s hg38.chrX_KI270880v1_alt     66391 321 +    284869 TGGGCCGGAGCTCAAGAGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATCGGGATCTGGA----GGGCCTGAGCCAGACGGTCTCCAAGCTGCCTCTAGCTCTAGTTCACATTTTCATCGACACGTACTTTTGGAAAATGTTCTAGATCCATCAGAAGACATCGGACAACCACCGGTAATTTAGAACGCAAGGAGCTCACCTCAGATTGCCACCCACCTCTCACTCAGCAAGTAGAGAGGCTGGTCCATTTTGGCTGGAAAACTGTGGTGCTACGTAAAT-ATCACTTTGTGACATGCTTATTAGTGCTG-CTGATGGAAAGCTG
s panTro5.chrX             155360919 293 - 155549662 tgggccggagctcaacagatgcgtcctggggccctgagtcc--------------tctcctggatcgggatctgga----gggcctgagccagacggtctCCAAGCTGCCTCCAGCTCTAGTTCACATTTTCATCGACACGTACTTTTGGAAAACGTTCTAGATCCATCAGAAGACGTCGGACA----------------------------TCACCTCAGATTGCCACCCACCTCTCACTCAGCAAGTAGAGAGGCTGGTCCATTTTGGCTGGAAAACTGTGGTGCTACATAAAT-ATCACTTTGTGACATGCTTATTAGTGCTG-CTGATGGAAGGCCG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      134727 320 +    417917 TGGGCCGGAGCTCAAGGGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATCGGGATCTGCA----GGGCCTGAGCCAGATGGTCTCCAAGCTGCCTCCAGCTCTAGTTCACATTTTCATCGACACGTACTTTTGGAAAACGTTCTAGATCCATCAGAAGATGTCAGACAACCACCGGTAATTTAGAACGCAAGGAGCTCACCTCAGATTGCCACCCACCTCTCACTCAGCAAGTAGAGAGGCTGGTCCATTTTGGCTGGAAAACTGT-GTGCTATGTAAAT-ATCACTTTGTGACATGCTTATTAGTGCTG-CTGATGGAAGGCCG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149024678 320 - 149150640 TGGGCCGGAGCTCAAGAGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATCGGGATCGGGA----GGGCCTGAGCCAGGCGGTCTCCAAGCTGCCTCCATTTCTGGTTCACGTTTTCATCCACACGTACTTTTGGAAAACGTTCTAGATCGATCAGAACACGTCGGACAACCACCAGGAATTTAGAACCCAAGGAGCTCACCTCGGATTGCCACCCACCTCTCCCTCAGCAAGT--AGAGGCTGGACCATTGGGGCTGGAAAACTATGGTGCTACATAAATAATCACTGCGTGACATGCTTATTAGTGCTG-CTGATGGGAGGCTA
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171704028 320 - 171882078 TGGGCCGGAGCTCAAGAGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATCGGGATCGGGA----GGGCCTGAGCCAGGCGGTCTCCAAGCTGCCTCCATTTCTGGTTCACGTTTTCATCCACACGTACTTTTGGAAAACGTTCTAGATCGATCAGAACACGTCGGACAACCACCAGGAATTTAGAACCCAAGGAGCTCACCTCGGATTGCCACCCACCTCTCCCTCAGCAAGT--AGAGGCTGGACCATTGGGGCTGGAAAACTATGGTGCTACATAAATAATCACTGCGTGACATGCTTATTAGTGCTG-CTGATGGGAGGCTA
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      178647 320 +  25972781 TGGGCCGGAGCTCAAGAGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATCGGGATCGGGA----GGGCCTGAGCCAGGCGGTCTCCAAGCTGCCTCCATTTCTGGTTCACGTTTTCATCCACACGTACTTTTGGAAAACGTTCTAGATCGATCAGAACACGTCGGACAACCACCAGGAATTTAGAACCCAAGGAGCTCACCTCGGATTGCCACCCACCTCTCCCTCAGCAAGT--AGAGGCTGGACCATTGGGGCTGGAAAACTATGGTGCTACATAAATAATCACTGCGTGACATGCTTATTAGTGCTG-CTGATGGGAGGCTA
i macNem1.NW_012017243v1   I 20 C 0
s chlSab2.chrUn_KE147541v1    108291 317 -    811265 TGGGCTGGAGCTCATGAGATACGTCCTGGGGCCCTGAGTCC--------------CTTCCTGGATCGGGATCGGGA----GGGCCTGAGCCAGGCGGTCTCCAAGCTGCCTCCATTTCTGGTTCACGTTTTCGTCGACACGTACTTTTGGAAAACATTCTAGATCCATCAGAACA---TGGACAACCACCAGGAATTTAGAACCCAAGGAGCTCACGTCGGACTGCCACCCACCTCTCACTCAGCAAGT--AGAGGCTGGTCCACTGGGGCTGGAAAACTATGGTGCTACATAAATAATCACTTCATGACATGCTTATTAGTGCTG-CTGATGGAAGGCCG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       39041 319 -    350446 TGGGCTGGAGCTCAAGAGATGCGTCCTGGGGCCCTGAGTCC--------------CCTCCTGGATC-AGATCGGGA----GGGCCTGAGCCAGGCGGTCTCCAAGCTGCCTCCATGTCTAGTTCACATTTTCATCGACATGTACTTTTGGAAAACGTTCTAGATCGATCAGAACACGTCGGCCAACCACCAGGAATTTAGAACCCAAGGAGCTCACCTCGGATTGCCACCCACCCCTCCCTCAGCAAGT--AGAGGCTGGTCCATTGGGGCTGCAAAACTATGGCGCCACATAAGTAATCACTTCGTGACATGCTTATTAGTGCTG-CTGATGGGAGGCCA
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            148845 277 +    465904 -----CGGAGCTCAAGGG-TGCGTCCT-GGGCCCTGAGTCC--------------CGCTCCAGATGGCTGCCTGGA----GAGT---------------------CTCCCTTCAGCTCTAGTTCAGCTTCTCATTGACATTCCATTCTGGAAAACGTTCCAGAGCCATCAGACCACGGGACACGACTCCC--------------CAAGGAGCCCGCCTCCGACTGCCCACAGCCTCTCACTCAGCAAGC--AGAGGCTGGGCGAGCGTGGCTGGCGAACGACGGGGCCACATGGT--ACCACCTCGCGACACGCTCAGTGCTGCCGACGGATGAAAGGCTG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            111229 302 +  11138919 TGGGCCAGAGCTCAGGGGATGGCTCCTGGGGCTGTGAGCTTGGTACAGACAAGTGCTCTCTGGGT--ATATCTGGATGATGGACCTCTGCAAGG-----------CTGCCTCAAGCTCTA--TCTCATTTTC---------TAATTTCTGGAGATGTTCTAGATCCATTAGGACACATCAG--AACCACCAATGATTCAGA----AACAGTCTCTCCTGGGACCAACACCCACCCCTCACTCATCATC---AGAGAGTGG-CCACTCTGGCTGGGAAACCACAGGCCTATAGATAC-ATCACTTCGGGATGTGCC---TGATGCTG-CTGTCCAGATGTCA
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 50203 292 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=310034.000000
s hg38.chrX_KI270880v1_alt     66712 100 +    284869 GTGTTCAGCTGAAAA--TTTTCAAATGGTATAAACAAGTTCCGACGGAACATTCTGAATATTTCAGGCTTCCGTAGTATTCTCGGGACACCAGACGCACCAG
s panTro5.chrX             155361212 100 - 155549662 GTGTTCAGCTGAAAA--ATTTCAAATGGTATAAACAAGTTCCAACGGAACATTCTGAATATTTCAGGCTTCCGTAGTATTCTTGGGACACCAGATGCACCAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      135047  99 +    417917 GTGTTCAGCTGAAAA--ATTTCAAATGGTATAAACAAGTTCCAAGGGAACATTCTGAATATTTCA-GCTTCCGTAGTATTCTTGGGACACCAGACGCACCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149024998  67 - 149150640 GTGTTGAGCTGAAAA-AATTTCAAATGGTATAAACAAGTTCCAAGGGAATATTCTGAGTATTTCAGGC----------------------------------
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171704348 101 - 171882078 GTGTTGAGCTGAAAA-AATTTCAAATGGTATAAACAAGTTCCAAGGGAACATTCTGAGTATTTCAGGCTTCCGTCATATTCTCGGGCCACAAGACGCCCCAG
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      178967 101 +  25972781 GTGTTGAGCTGAAAA-AATTTCAAATGGTATAAACAAGTTCCAAGGGAACATTCTGAGTATTTCAGGCTTCCGTCATATTCTCGGGCCACAAGACGCACCAG
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    108608 101 -    811265 GTGCTGAGCGGAGAA-AATTTCAAACGGTATAAACAAGTTCCAAGGGAACATTCTGAGTATTTCAGGCTTCCGTCGTATTCTCGGGTCACAAGACACACCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       39360 101 -    350446 CTGTTCAGCTGAAAA-CATTTCAAATAGTATAAACAAGTTCCAAGGGAACATTCTGAGTATTTCAGGCTTCCACCGTATACTCGGGTCACAAGACGCACCAG
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 50495 100 +   2853901 gcgcccagccGAGAA--ATTTCAAATGTTATAGACGAGTTCCAAGGGAACATTCTTAATATCTCAGGATTACGTGGTATCCTCAGGACACACGACGCAccag
i calJac3.chrY             I 292 I 2307
s saiBol1.JH378345            149122 100 +    465904 ACGCGCGGCTGAGAA--ATTCCAAATGTTATAAACGAGTTCCAAGGGAACATTCTTAGTATTTCAGGATTACATAGTATCCTCAGGACAGAAGACGCAccag
i saiBol1.JH378345         C 0 I 252
s otoGar3.GL873584            111531  99 +  11138919 GCATCCCACCAAAAAAACCCTCACATGTTACAGACAAGTTCCACAGGAATATT---AATATCTCAGGTTTCAGGAGTATTATAGGTTTACAATACACACCAA
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=185969.000000
s hg38.chrX_KI270880v1_alt     66812 94 +    284869 CCATACGTGTTTCTATAACATCTGGAAGCAAT-GTTTTATCGCTTTAAACTGCATAGTATAAAACGACAGAAAGCATTTTTAAAAATACACGGCT
s panTro5.chrX             155361312 93 - 155549662 CCATACGTGTTTCTGTAACATCTGG-AGCAAT-GTTTTATCGCTTTAAACTGCATAGTATAAAACGACAGAAAGGATTTTTAAAAATACATGGCT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      135146 94 +    417917 CCATACGTGTTTCTATAACATCTGGAAGCAAT-GTTTTATCGCTTTAAACTGCATAGTATAAAACAACACAAAGCATTTTTAAAAATACACGGCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025065 51 - 149150640 --------------------------------------------TTAAACTGCATAATATAAAACGACAGGAAGCATTTTTAAAAATACACTGCT
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171704449 94 - 171882078 CCATATGTGTGTCTAAAACATCTGGAAGCAAT-GTTTTATTGCTTTAAACTGCATAGTATAAAACGACAGGAAGCATTTTTAAAAATACACTGCT
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      179068 94 +  25972781 CCATATGTGTGTCTAAAACATCTGGAAGCAAT-GTTTTATTGCTTTAAACTGCATAGTATAAAACGACAGGAAGCATTTTAAAAAATACACTGCG
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    108709 94 -    811265 CCATATGTGTGTCTAAAACATCTGGAAGCAAT-GTTTTATTGCTTTAAACTGCATAGTATAAAACGACAGGAAGCATTTTAAAAAATACACTGCT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       39461 94 -    350446 CCATATGTGTGTCTAAAACTTCTGGAAGCAAT-GTTTTATTGCTTTAAACTGCATAGTATAAAACGACAGGAAGCATTTTAAAAAATACACTGCT
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584            111630 60 +  11138919 CCATATGTTTTTCTATAACATGTGGAGACCATAGTTTTATTTCTTCAAACGG-----------------------------------ACATAGCT
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=404578.000000
s hg38.chrX_KI270880v1_alt     66906 217 +    284869 GTCGGcgggcacggtggctcacacctgtaatcccaaaactttgggaggccgaggcgggcggatcacgagg-tcaggagatcaagaccatcccggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggc---gggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcg
s panTro5.chrX             155361405 217 - 155549662 GTCGGcaggcacggtggctcacacctgtaatcccaaaactttgggaggccgagacaggcggatcacgagg-tcaggagattgagaccatcctggctaacacggtgaaaccctgtctccactaaaaatacaaaaaaattagccgggcacggtggc---aggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaatccgggaggcg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      135240 215 +    417917 GTCGGcgggcacggtggctcacacctgtaat-ccaaaactttgggaggccgagacgggtggatcacgaggatcaggagattgagaccatcctggctaacacggtgaaaccctgtctccactaaaaatacaaaaaaattagccgggcacggtggc---aggcgcctgtagt-ccagctactcgggaggctgaggcaggagaatggcgtgaaccc-ggaggcg
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025116 195 - 149150640 GTCGGCGGGCA-----------------Catcccagcaccttgggaggccgatgtgggcagatcacgagg-tcaagagattgagatcatc----ctaacaaggtgaaatcccatctctacctaaaatacaaaaaaa-tagccaggtttggtggcggtgggcgcctgtggtcccagctactcgggaagctgaggc---agaatggcgtaaacccgggaggcg
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171704543 195 - 171882078 GTCGGCGGGCA-----------------Catcccagcaccttgggaggccgatgtgggcagatcacgagg-tcaagagattgagatcatc----ctaacaaggtgaaatcccatctctacctaaaatacaaaaaaa-tagccaggtttggtggcggtgggcgcctgtagtcccagctactcgggaagctgaggc---agaatggcgtaaacccgggaggcg
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      179162 195 +  25972781 GTCGGCGGGCA-----------------Catcccagcaccttgggaggccgatgtgggcagatcacgagg-tcaagagattgagatcatc----ctaacaaggtgaaatcccatctctacctaaaatacaaaaaaa-tagccaggtttggtggcggcgggcgcctgtggtcccagctactcgggaagctgaggc---agaatggcgtaaacccgggaggcg
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    108803 219 -    811265 GTCGGTgggcacggtggctcacgcctgtcatcccagcactttaggaggccgatgtgggcggatcatgagg-tcaggagattgagatcatcctggctaacaaggtgaaatcccatctctaccaaaaatacaaaaaaa-tagccaggtttcgtggcggtgggcgcctgtagtcccaggtactcgggaggctgaggcaggagaatggcgtgaaaccggggggcg
i chlSab2.chrUn_KE147541v1 C 0 I 3500
s manLeu1.NW_012108508v1       39555 215 -    350446 GTCGGcgggcgcggtggctcacgcctgtcatcccagcactttgggaggccgatgtgggcggatcacgagg-ccaggagattgagatcaacctggctaacaaggtgatatcccatctctaccaaaaatacaaaaaat-tagccaggcatggtggc----agcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggcg
i manLeu1.NW_012108508v1   C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690   0 +  11138919 C
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=132622.000000
s hg38.chrX_KI270880v1_alt     67123 82 +    284869 gagcttgcagtgagccgagatcgcgccactgcactccagcctgggggacagagcgagactccg--tctcaaaaaaaaaaaaaaa
s panTro5.chrX             155361622 81 - 155549662 gagcttgcagtgagccgcgattgcaccactgcacttcagctt-ggtgacagagcaagactccg--tctcaaaaaaaaaaaaaaa
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      135455 81 +    417917 gagcttgcagtgagccgagatcgcaccactgcacttcagctt-ggtgacagagcgagactcca--tctcaaaaaaaaaaaaaaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025311 82 - 149150640 gagcttgcagtgagcccagatggtgccactgaactccagcctgggcgacagagcaagactccg--tctcaaaaaaaaaaaaaaa
i rheMac8.chrX             C 0 I 6
s macFas5.chr7             171704738 82 - 171882078 gagcttgcagtgagcccagatggtgccactgaactccagcctgggcgacagagcaaggctccg--tctcaaaaaaaaaaaaaaa
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      179357 84 +  25972781 gagcttgcagtgagcccagatggtgccactgaactccagcctgggcgacagagcaagactccgcttctcaaaaaaaaaaaaaaa
i macNem1.NW_012017243v1   C 0 I 1088
s manLeu1.NW_012108508v1       39770 82 -    350446 gagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagcaagactccg--tctcaaaaaaaaaaagaaa
i manLeu1.NW_012108508v1   C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690  0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=3574.000000
s hg38.chrX_KI270880v1_alt     67205 5 +    284869 aaaaa
s panTro5.chrX             155361703 5 - 155549662 aaaaa
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      135536 5 +    417917 aaaaa
i gorGor5.CYUI01015925v1   C 0 I 876
s macFas5.chr7             171704820 5 - 171882078 aagag
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       39852 5 -    350446 aaaaa
i manLeu1.NW_012108508v1   C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690 0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393 6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=546.000000
s hg38.chrX_KI270880v1_alt     67210 1 +    284869 a
s panTro5.chrX             155361708 1 - 155549662 a
i panTro5.chrX             C 0 C 0
s macFas5.chr7             171704825 1 - 171882078 a
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       39857 1 -    350446 a
i manLeu1.NW_012108508v1   C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690 0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393 6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I
e gorGor5.CYUI01015925v1      135541 876 +    417917 I

a score=1092.000000
s hg38.chrX_KI270880v1_alt     67211 4 +    284869 aaaa
s panTro5.chrX             155361709 4 - 155549662 aaaa
i panTro5.chrX             C 0 T 68877
s manLeu1.NW_012108508v1       39858 4 -    350446 aaaa
i manLeu1.NW_012108508v1   C 0 I 635
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690 0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393 6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I
e macFas5.chr7             171704826 0 - 171882078 C
e gorGor5.CYUI01015925v1      135541 876 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     67215 14 +    284869 aaaaaccaaaaaaa
e calJac3.chrY                 50595 2307 +   2853901 I
e manLeu1.NW_012108508v1       39862 635 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690  0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393  6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I
e macFas5.chr7             171704826  0 - 171882078 C
e gorGor5.CYUI01015925v1      135541 876 +    417917 I

a score=38064.000000
s hg38.chrX_KI270880v1_alt     67229 427 +    284869 caaaaaaacaactaagttcccagtcatgactggatgggagtttggacacaccttattatacccctcctgctttggcagtttaaacacaaccaaccagcaaaaaggttaaaatcaacatcgtaagactgacagaacagactctgtggcaaacaagaccaagggccacctgaggtgagggttaagtcacacaccgcctacacttaaagaataaactacagttccaactgccaaagcatttctttttctccagcagctaaaTGTCCTTTTAGGTTATTCACTAGAGACCTCTGCAGAAACTCGTTTTTGAGATTCAAGAAGTAAATAAAGGATGTTTTTCTTTTTCTCTATTGCTTATCTTGGCCTCAAGCTCGCGCACGCAAGAAGActctctctctctctctctctctATATATATATATATAC-----tttt
s gorGor5.CYUI01015925v1      136417 431 +    417917 caaaaaaacaactaagttcccagccatgactagatggg-gtttggacacaccttattatacccctcctgctttggcagtttaaacacaaccaaccagcaaaaaggttaaaatcaacattgtaagactgacagaacagactctgtggcaaacaagaccaagggccacctgaggtgagggttaagtcacacaccgcctacacttaaagaataaactacagttccaactgccaaagcatttctttttctccagcagctaaatgtccttttaggttattcactagagacctctgcagaaactcgtttttgagattcaagaagtgaataaaggatgtttttctttttctctattgcttatcttggcctcaagctcgtgcacgcaagaagacacactctctctctctctctctctatatatatatatacataattttt
i gorGor5.CYUI01015925v1   I 876 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e manLeu1.NW_012108508v1       39862 635 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            149222 252 +    465904 I
e otoGar3.GL873584            111690   0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393   6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I
e macFas5.chr7             171704826   0 - 171882078 C

a score=139281.000000
s hg38.chrX_KI270880v1_alt     67656 703 +    284869 tttttttttttgagacagggccttcctctgttgctcaggctggtgagcagtggtgcaatctcagctcacagtaatctccgactcccagcttcaagcatttctcctgcctcagcctcctgagtagctgagacttcaggtgcgccaccacgcctggctaatttgtgtatttttagcagagatggggtttcgccatgttgcccaggctggtctcgaactcctgaactcaagtgatctgcctgcctccaactcccaaa-tgctggaatcacaggcgtgagtcaccatgcctgaccAATataaacaatattaaaacacctgcagcttcctgtcagatcctgatgaacagacccctctgttccaccagccgtaactacagctttgactgggaaaagactgattccaggccaggtgtggtggctcacgcctgtcatcccagcactttgagaggctgaggcgggtggatcacctgaggtcaggagtttgagaccagtctagccaacaaggtgaaag-cctgcctctactaaaaatacaaaaattagccgggggtggtggtgtgcgcctgtaatcacagctactcgggaggctgagggaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagattgcaccattgcatctcagcctgggtgagagtgagaatctgtctc--------------------------------aaaaaaaaaaaaaaaaaaaaaaaa
s gorGor5.CYUI01015925v1      136848 698 +    417917 tttttttttttgagacagggccttcctctgctgctcaggctggtgagcagtggtgcaatctcagctcacagtaatctccgactcccagcttcaagcatttctcctgcctcagcctcctgagtagctgagactgcaggtgcgccaccacacctggctaatttgtgtatttttagcagagacgggatttcgccatgttgcccaggctggtctcgaactcctgaactcaagtgatctgcctgcctccaactcccaaa-tgctggaatcacaggcatgagccaccatgcctgaccaatataaacaatattaaaacacctgcagcttcctgtcagatcctgatgaatacacccctctgttccaccagccgtaactacagctttgactgggaaaagactgattccaggctaggtgtggtggctcacgcctgtcatcccagcactttgagaggctgaggcgggtggatcacctgaggtcaggagtttgagaccagtctagccaacatggtgaaag-cctgcctctactaaaa-tacaaaaattagccgggcgtggtggtgtgcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacc--ggag-cggaggttgcagtgagcttagattgcaccattgcatctcagcctgggtgagagtgagaatctgtctc--------------------------------aaaaaaaaaaaaaaaaaaaaaga-
i gorGor5.CYUI01015925v1   C 0 C 0
s saiBol1.JH378345            149474 688 +    465904 tttttttttttgagacagggtcttgctctgtcacccaggctgcagttcaacgggacaatctcagctcac------------------------agcatttctcctgcctcagcctcctgagtagctgagaccacaggcgtgccaccacgcctggctaatttgtgaatttttagtagagatggggtttcgccatgctgcctatgctggtcttgaa-tcctggactcaagtgaccagcccgccttggcctcccaaagtgctgagattacaggaatgagccaccaagcccgtccAagatagacaatattaaaaaacctgcagttctctgccagaccctgactaacagacacctctgttccaccagccataaccacagctttaacc-agaaaagaccga--------caggcatggtcgctcaggcctgtaaccccagcagtttagaaggctgaggcgggtggatcacctggggtcaggggtttgagaccagactggccaacgtgttgaaaaccccgtctcttctaaaaatacaaaaattacctgggtgtgctggtccatgcctgcaatcccagctactctggaagctgaggcattagaattgctcgaacccaggaggcggaggttgcagtgagc--------------cgcactccagcctgggcaacagagcgagactgtctcagaaaaagaaaaaaaaaactcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagg-
i saiBol1.JH378345         I 252 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e manLeu1.NW_012108508v1       39862 635 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690   0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149025393   6 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I
e macFas5.chr7             171704826   0 - 171882078 C

a score=30165.000000
s hg38.chrX_KI270880v1_alt     68359 63 +    284869 ctgattgcaatcactttatcctggtaactactcaccacggactggttctggccggttgacaga
s gorGor5.CYUI01015925v1      137546 40 +    417917 ctgactgcaatcactttatcctgataactactcaccacgg-----------------------
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025399 63 - 149150640 ctgattgcagtcactttatcctgataaccacctaccacggactggttctggcaggtttagagg
i rheMac8.chrX             I 6 C 0
s macFas5.chr7             171704826 63 - 171882078 ctgattgcaatcactttttcctgataaccaccgaccacggactggttctggcaggtttagagg
i macFas5.chr7             C 0 C 0
s saiBol1.JH378345            150162 54 +    465904 ctgattccaatcgttttgtcctgataaccaaccagcatggactgggtctggcaa---------
i saiBol1.JH378345         C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e manLeu1.NW_012108508v1       39862 635 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690  0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=259993.000000
s hg38.chrX_KI270880v1_alt     68422 254 +    284869 ggctgcagagttgcttcaccttttgacctagggg-gcctaaccataatgcatttaaatgttaagtctccgctccaaggtgaactcgggagtaggtaacatgcatgtttgttcaatacccatgcgtcaggacacccttggtgaatatccatagctcttcctataacttcttgaatatatacacttggccaacccactcagcataaattcccgtctcatcttttcttccctccaagtgcTTGTTTTTAGttttcttt
s gorGor5.CYUI01015925v1      137586 252 +    417917 --ctgcaaagttgcttcaccttttgacctagggg-gcctaaccataatgcatttaaatgttaagtctccactccagggtgaacttgggagtaggtaacatgcatgtttgttcaatacccatgcgtcaggacacccttggtgaatatccatagctcttcctataacttcttgaatatatacacttggccaacccactcagcataaattcctgtctcatcttttcttccctccaagtgcttgtttttagttttcttt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025462 255 - 149150640 ggctgcaaacttgcttcaccttttgacctgggggggcctaactatactgcctttaaatgttaagtctccactgcaatatcaacttgggagtaggtaacatgcatatttgttcaacacccatgtgtcaggactcccttggtgaaaatccatagcgcttcctgtaacttcttgcatacatacacttggccaacccactgagcataaattcctgtctcatcttttcttccccccaagtgcttgCttttagtttagttt
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171704889 255 - 171882078 ggctgcaaacttgcttcaccttttgacctgggggtgcctaactatactgcctttaaatgttaagtctccactgcaatatcaacttgggagtaggtaacatgcatatttgttcaacacccatgtgtcaggactcccttggtgaaaatccatagcgcttcctgtaacttcttgcatacatacacttggccaacccactgagcataaattcctgtctcatcttttcctccccccaactgcttgCttttagtttagttt
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       40497 255 -    350446 GGCTGCAAACTTGCTTCaccttttgacctgggggagcctaactatactgcatttaaatgttaagtctccactgcaaggtcaacttgggagtaggtaacatgcatatttgtccaatacccatgggccaggacccccttggtgaatatccatagcgcttcctgtaacttcttgcatatatacacttggccaacccactcagcataaattcctgtctcatcttttcttccccccaagtgcttgCttttagtttagttt
i manLeu1.NW_012108508v1   I 635 C 0
s saiBol1.JH378345            150216 212 +    465904 ---------------------------------------aactataatccatttaaatgtgaagtctcccttccaaggtgaacgtgggggtaggtaacatgaacgtgtgttcgataactacagttcaagacactcttgccgaatatccatagcttttcctataacttgctgaatatgtaccgttggccaaaccactcagcataagctcctgtctcaccttttctttcctacaaattcttgCttttagtttt----
i saiBol1.JH378345         C 0 C 0
e calJac3.chrY                 50595 2307 +   2853901 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690   0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=259744.000000
s hg38.chrX_KI270880v1_alt     68676 190 +    284869 --------tttttttttttttttttttttttgagatggagtcttgctctggtgcccaggctggagtgcagcctctgcctcctgggttccagtgattctcctgcctcagcctcccgg-gtagctgagattacaggtacATTAGCCAGAGGCTGCGCTTCTCACCTGCGGTGTATAATCACCTTCTATGAAATAAATGGCG
s gorGor5.CYUI01015925v1      137838 174 +    417917 --------ttctttt----------------gagacggagtcttgctctggtgcccaggctggagcgcagcctctgcctcctgggttccagtgattctcctgcctcagcctcccgg-gtagctgagattacaggtacATTAGCCAGAGGCTGCGCTTCTCACCTGCAGTGTATAATCACCTTCTATGAAATAAATGGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025717 183 - 149150640 --------tgttttg--------ttttttccgagatggagtcttgctctgttgcccaggctagagtgcagcctcagcctcccagcttctagtgattctcctgcctcagcctcccggcttagctgagattacaagcacATTAGCCGGAGGCTGTGCGTCTCACCTGCAGTGAATAATCACCTTCTGTGAAATAAATGACG
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705144 183 - 171882078 --------agttttg--------ttttttccgagatggagtcttgctctgttgcccaggctagagtgcagcctcagcctcccagcttctagtgattctcctgcctcagcctcccagcttagctgagattacaagcacATTAGCCGGAGGCTGTGCGTCTCACCTGCAGTGAATAATCACCTTCTGTGAAATAAATGACG
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       40752 181 -    350446 --------tgttt----------ttttttccgggatggagtcttgctctgttgtccaggctagagtgcagcctcagcctcccaggttctagtgattctcctgcctcagcctcccggcttaggtgagattacaagcacATTAGCCGGAGGCTGTGCGTCTCATCTGAAGTGAATAATCACCTTCTGTGAAATAAATGACG
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 52902 190 +   2853901 ttttgggtttttttt--------ttatttttgagacagagtcttgctctgttgcccaggctggactgcagcctccgcctcccaggttccagtgattctcctgcctcagcctctcgg-ggagctgagattacaggtgcCTTACATAGAGGCTGCGCTTCTGACCTGCAGTGAATAATCACCTTCTAAGAAATACGTGGCA
i calJac3.chrY             I 2307 C 0
s saiBol1.JH378345            150428 187 +    465904 ---tgctattttttc--------ccccctgcaagacggagtctcgctctgttgcccaggctggagtgcggcctccggttcccacgttccagtgattctccagcctcagcctcccgg-gtagctgagattacaggtgcCTTAGCTAGAGGCTGCGCTTCTCACCTGGAGTGAATGATCAGCTTCTAAGAAATACGTGGCA
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690   0 +  11138919 C
e panTro5.chrX             155361713 68877 - 155549662 T
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=8294.000000
s hg38.chrX_KI270880v1_alt     68866 8 +    284869 TTTCTTCT
s panTro5.chrX                190041 8 + 155549662 tTTCTTCT
i panTro5.chrX             I 4362 C 0
s gorGor5.CYUI01015925v1      138012 8 +    417917 TTTCTTCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025900 3 - 149150640 -----TTT
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705327 3 - 171882078 -----TTT
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       40933 3 -    350446 -----TTT
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53092 8 +   2853901 TTTCTTCT
i calJac3.chrY             C 0 I 322
s saiBol1.JH378345            150615 8 +    465904 TTTCTTCT
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690 0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=71653.000000
s hg38.chrX_KI270880v1_alt     68874 120 +    284869 AAGAAATACAGTGGGat--------------------------------------tttgggaggccgaagcgggaggattgcttggacc--caggaattccagagcactctaggtaacatagcaagacctcgtctctgc--aaaaat-aaataaat-aaataaa
s panTro5.chrX                190049 122 + 155549662 AAGAAATACAGTGGGat--------------------------------------tttgggagg-cgaagcgggaggattgcttggaccgacaggaattccagagcactctaggtaacatagcaagacctcgtctctgc-aaaaaat-aaataaaT-aaataaa
i panTro5.chrX             C 0 I 13424
s gorGor5.CYUI01015925v1      138020 123 +    417917 AAGAAATACAGTGGGat--------------------------------------tttgggaggccgaagcgggaggattgcttggacc--caggaattccagagcactctaggtaacatagcaagaccttgtctctgcaaaaaaataaaataaat-aaataaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025903  67 - 149150640 AAGAAATACAGT----------------------------------------------------------------------------------------------ACTCTGGGTAACATAGCAAGACCTCCTGTCTAA--AAACAA-AAACAAACAAAaaaaa
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705330  66 - 171882078 AAGAAATACAGT----------------------------------------------------------------------------------------------ACTCTGGGTAACACAGCAAGACCTCCTGTCTAA--AAACAA-AAACAAAC-Aaaaaaa
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       40936 119 -    350446 AAGAAATACAGTGGGCT--------------------------------------tttgggaggctgaggcgggaggattgcttggacc--caggaattccagagcactctgggtaacatagcaagacctcctgtctgc--aaaaaa-aaaaaaa--aaaaaat
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53422 105 +   2853901 aagaaATAAAGTagtat--------------------------------------tttgggaggccaaggagggaggactgattgggcc--taggaggtccagagctgtctgggtaacatggcaagccctcatttcaaa--aaaaaa-----------------
i calJac3.chrY             I 322 C 0
s saiBol1.JH378345            150623 141 +    465904 AAGAAATATGGTAGTATAggctgggcacagaggctcacacctgtaatcccagcactttgggaagtggaggcgggcagatca--cgaggt--cagcagatggagacctttgtggtcaacgtggtgagatccccgtctcta--ctaaag-----------------
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690   0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=33292.000000
s hg38.chrX_KI270880v1_alt     68994 27 +    284869 taaacaaaaattagcctggcgtgatgg
s gorGor5.CYUI01015925v1      138143 27 +    417917 taaacaaaaattagcctggcgtgatgg
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025970 25 - 149150640 --cacaaaaattagcctggcgtgatgg
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705396 25 - 171882078 --tacaaaaattagcctggcgtgatgg
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       41055 25 -    350446 --tacacaaattagcgtggcatgatgg
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53527 27 +   2853901 aaaaaaaaaaaaagcggggcgtgatgg
i calJac3.chrY             C 0 C 0
s saiBol1.JH378345            150764 27 +    465904 tcgaaaaaaattagccgggtgtggtgg
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690  0 +  11138919 C
e panTro5.chrX                190171 13424 + 155549662 I
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=200624.000000
s hg38.chrX_KI270880v1_alt     69021 130 +    284869 tgcacgcctgtaatcccagctactggggaggctgaggcaggaa------------------------------gtccaactgtgtttgcgccactg--cactccagcctaggagacagagcaagaccctgtctccaaagaattgtaaaataaataaa----------aaaCG
s panTro5.chrX                203595 128 + 155549662 TGCACGCCTGTAATCCCAGCTACTGgggaggctgaggcaggaa------------------------------gtccagctgtgtttgcgccactg--cactccagcctaggagacagagcaagacc--gtctccaaagaattgtaaaataaataaa----------aaaCG
i panTro5.chrX             I 13424 C 0
s gorGor5.CYUI01015925v1      138170 130 +    417917 tgcacgcctgtaatcccagctactggggaggctgaggcaggaa------------------------------gtccagctatgtttgcgccactg--cactccagcctaggagacagagcaagaccctgtctccaaagaattgtaaaataaataaa----------aaaCG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149025995 121 - 149150640 tgcaggcctgtaatcccagctactggggaggctgaggcaggaA------------------------------GTCCagc--tgtttgtgccactgcacactccagtctaggagacagaacaagaccctatctccaaaaaaaTTTCAAATAAA-------------------
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705421 121 - 171882078 tgcaggcctgtaatcccagctactggggaggctgaggcaggaa------------------------------gtccagc--tgtttgtgccactgcacactccagtctaggaaacagaacaagaccctatctccaaaaaaatttcaaataaa-------------------
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       41080 128 -    350446 tgcacgcctgtaatcccagctactggggaggctgaggcagtaa------------------------------gtccagc--tgtttgtgccactg--cactccagtctaggagacagaacaagaccctgtctccaaaactatataaaataaataaa----------aaaGG
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53554 137 +   2853901 tgcacgcctataatcccagctaatggggagactgaggcaggaa------------------------------gacgagctgtagttgagccactg--cactcctgcctgggagacagagcaagagcctgtgtccaaaaaaa---aaaataaaaaaaataacattaaaaaaG
i calJac3.chrY             C 0 C 0
s saiBol1.JH378345            150791 151 +    465904 ctggagactgtagtcccacctactcaggaggctgaggcaggggagtcacttgaacccgggagagggaggttgcggtcagccgagatcacgccactg--cgctccagcct-ggcgacagagcaagactccgtctcaaaagaaa---aagaaaaagaaa---------------
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e otoGar3.GL873584            111690   0 +  11138919 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=18034.000000
s hg38.chrX_KI270880v1_alt     69151 11 +    284869 gaccaggcgca
s panTro5.chrX                203723 11 + 155549662 gaccaggcgca
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138300 11 +    417917 gaccaggcaca
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026116 11 - 149150640 ggccgggcgcg
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705542 11 - 171882078 ggccgggcgcg
i macFas5.chr7             C 0 C 0
s manLeu1.NW_012108508v1       41208 11 -    350446 ggccgggcgca
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53691 11 +   2853901 GGGCCGGCTCA
i calJac3.chrY             C 0 I 3
s otoGar3.GL873584            111690 11 +  11138919 ggctaggccca
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            150942  0 +    465904 C
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e cerAty1.NW_012001098v1      127326 1054 -   1025902 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=32570.000000
s hg38.chrX_KI270880v1_alt     69162 16 +    284869 gtgactcacgtctgaa
s panTro5.chrX                203734 16 + 155549662 gtgactcacgtctgta
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138311 16 +    417917 gtgactcacgtctgaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026127 16 - 149150640 gtggctcacgcctgta
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705553 16 - 171882078 gtggctcacgcctgtc
i macFas5.chr7             C 0 C 0
s cerAty1.NW_012001098v1      128380 16 -   1025902 gtggctcacgcctgtc
i cerAty1.NW_012001098v1   I 1054 C 0
s manLeu1.NW_012108508v1       41219 16 -    350446 gtggctcgcgtctgtc
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53705 16 +   2853901 ACTGCTGATGTCTGTA
i calJac3.chrY             I 3 C 0
s saiBol1.JH378345            150942  4 +    465904 ------------TACA
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            111701 16 +  11138919 gtggctcacatctgta
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e chlSab2.chrUn_KE147541v1    109022 3500 -    811265 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=268839.000000
s hg38.chrX_KI270880v1_alt     69178  91 +    284869 atcccagcactttg----------------------------ggaggccaaggcgggaggatcac----ttgaggtcaggagttcgagac-----cagcctggcccacatgggggaaacccagtctct
s panTro5.chrX                203750  91 + 155549662 atcccagcactttg----------------------------ggaggccgaggccggaggatcac----ttgaggtcaggagttcgagac-----cagcctggcccacatgggggaaacccagtctct
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138327  91 +    417917 atcccagcactttg----------------------------ggaggccgaggcgggaggatcac----ttgaggtcaggagttcgagac-----cagcctggcccacatgggggaaacccagtctct
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026143  76 - 149150640 atcccagcactttg----------------------------ggaggccgaggcgggcggatcac------aaggtcaggagatcgagac-----------------cac-ggtgaaaccccgtctct
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705569  93 - 171882078 atcccagcactttg----------------------------ggaggccgagacgggcggatcac------gaggtcaggagatcgagacgagaccatcctggctaacac-ggtgaaaccccgtctct
i macFas5.chr7             C 0 C 0
s cerAty1.NW_012001098v1      128396  90 -   1025902 atcccagcactttg----------------------------ggaggccaaggcgggcggatcac----ctgagggcaggagttcgagac-----cagcctggccaatat-ggtgaaaccccgtctct
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112522  90 -    811265 atcccagcactttg----------------------------ggaggccgaggcgggcggatcac----tttagggcaggagttcgagac-----cagcctggccaatat-ggtgaaaccccatctct
i chlSab2.chrUn_KE147541v1 I 3500 C 0
s manLeu1.NW_012108508v1       41235  90 -    350446 atcccagcactttg----------------------------ggcggccgaggcgggcggatcac----ttgaggtcacgagttcgagac-----cagcctggccaatat-ggtgaaaccccgtctct
i manLeu1.NW_012108508v1   C 0 C 0
s calJac3.chrY                 53721 118 +   2853901 ATGCCAGGACTTTGGAGGCCGAGGTGGNNNNNNNNNNactttggaggccgaggtgggcagatcac----gtgaggtcaggagttcgagac-----cagcctgcctaacac-ggtgaaaccccgtttct
i calJac3.chrY             C 0 C 0
s saiBol1.JH378345            150946  91 +    465904 GTG---gtattctg----------------------------ggagaccgaggagggaggactgcttgggtgggcccaggagttccagag-----ctgtctgggtaacat-ggcaagacctgatctct
i saiBol1.JH378345         C 0 I 3531
s otoGar3.GL873584            111717  87 +  11138919 atcccaacactctt----------------------------ggaggcagaggcaggtggatccc----ctgagcgcatgagttccagac-----cagcct---caacaa-gagggacacccatttct
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=296532.000000
s hg38.chrX_KI270880v1_alt     69269 113 +    284869 actaaaaatac--aacat--cagccaggcgtggtggcacgtgcctgtaa---gtcccagctcctc-gggagcctgagg-caggagaatcgcttgaacctgggaggcagaggttgcagtgagc
s panTro5.chrX                203841 113 + 155549662 actaaaaatac--aaaat--tagccaggcgtggtggcacgtgcccctaa---gtcccagctcctc-cggaggctgagg-caggagaatcgcctgaacctgggaggcagaggttgcagtgagc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138418 113 +    417917 actaaaaatac--aaaat--tagccaggcgtggtggcacgtgcctgtaa---gtcccagctcctc-gggaggctgagg-caggaaaatcgcttgaacctgggaggcagaggttgcagtgagc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026219 114 - 149150640 actaaaaatacaaaaaat--tagccgggcgcggttgtgggcgcctgtac----tcccagctactc-gggaggctgagg-caggagaatggcgtgaacccgggaggcggagcttgcagtgagc
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705662 114 - 171882078 actaaaaatacaaaaaat--tagccgggcgcggttgtgggcgcctgtac----tcccagctactc-gggaggctgagg-caggagaatggcgtgaacccgggaggcagagcttgcagtgagc
i macFas5.chr7             C 0 C 0
s cerAty1.NW_012001098v1      128486 114 -   1025902 actaaaaatacaaaaaat--taaccagacgaggtggcgggcgcctgtca----tcccagctcctc-gggaggctgagg-caggagaatcgcttgaacccgggaggcagaggttgcagtgagc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112612 113 -    811265 actaaaaatac-aaaaac--gagccggacgtggtggcgggtgcctgtca----tcccagctcctc-gggaggctgagg-caggggaatcgcttgaacccgggaggcggaggttgcagtgagc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       41325 113 -    350446 actaaaaatac-aaaaat--gagccggatgtggtggcgggcacctgtca----tcccagctactg-gggaggttgagg-caggagaatcgcttgaacccgggaggcggaggttgcagtgagc
i manLeu1.NW_012108508v1   C 0 I 2023
s calJac3.chrY                 53839 118 +   2853901 accaaaaataa-agcaat--gacccgggcatggtggcgcgtgcctgtcacgcatggcaggtactcggggagcccgagg-caggacaaacccttgaacctgggaggcggaggttgcggtgagc
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            111804 104 +  11138919 actaaaaatag--aaaatcatagccgag-----------gggcctataa----tcccatcttctg-gggaggctgagaccaagaggactggtcaagccccagagtttgaggttgttgtaagc
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=80271.000000
s hg38.chrX_KI270880v1_alt     69382 75 +    284869 caagatcgcgccatcgtactccagcctgggcaacagagcaaaactctgtctc----------aaaattaaaa--caaattaaaataa-----------
s panTro5.chrX                203954 75 + 155549662 caagatcgcgccattgcactccagcctgggcaacagagcaaaactctgtctc----------aaaattaaaa--caaattaaaataa-----------
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138531 73 +    417917 caagatcgcgccattgcactccagcctgggcaacagagcaaaa--ctgtctc----------aaaattaaaa--caaattaaaataa-----------
i gorGor5.CYUI01015925v1   C 0 I 2
s rheMac8.chrX             149026333 80 - 149150640 cgagatcgcgccattgcactccagcctgggcgacagagcaagaccccgtctcacg-----ataaaattaaat--taaattaaaataa-----------
i rheMac8.chrX             C 0 I 40
s macFas5.chr7             171705776 85 - 171882078 cgagatcgcgccactgcactccagcctgggcgacagagcaagaccccgtctcacgataaaataaaattaaat--taaattaaaaTAA-----------
i macFas5.chr7             C 0 I 6
s cerAty1.NW_012001098v1      128600 73 -   1025902 cgagatcgggccatt-------agccagggcgacagagcaagactccgtctcacg-----ataaaattaaat--taaaataaaataa-----------
i cerAty1.NW_012001098v1   C 0 I 11
s chlSab2.chrUn_KE147541v1    112725 73 -    811265 cgagatggggccacg-------agcccgggcgacagagcaagactccgtctcacg-----ataaaattaaat--taaattaaaataa-----------
i chlSab2.chrUn_KE147541v1 C 0 I 14
s calJac3.chrY                 53957  9 +   2853901 cgagatcgc-----------------------------------------------------------------------------------------
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            111908 84 +  11138919 ---tatgacgtcacggcactctacccagggcg--agagtaagacgctgtggc---------taaaataaaaTAATAAACTGACACGGTACTAAGGGCA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=4232.000000
s hg38.chrX_KI270880v1_alt     69457 16 +    284869 taaaata-------------aaaTAAAAT
s panTro5.chrX                204029  8 + 155549662 ---------------------aataaaaT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138606 16 +    417917 taaaaTA-------------AAAATAAAT
i gorGor5.CYUI01015925v1   I 2 C 0
s macFas5.chr7             171705867 16 - 171882078 TGGAATA-------------GAAGAGCAT
i macFas5.chr7             I 6 I 13
s cerAty1.NW_012001098v1      128684 16 -   1025902 tagaaca-------------aaatagaat
i cerAty1.NW_012001098v1   I 11 I 8
s chlSab2.chrUn_KE147541v1    112812 16 -    811265 tagaata-------------gaagaaaat
i chlSab2.chrUn_KE147541v1 I 14 I 8
s otoGar3.GL873584            111992 29 +  11138919 GAAAACATTCTCTTCTTTTTTAATACATT
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 53966  0 +   2853901 C
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e rheMac8.chrX             149026413 40 - 149150640 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=4464.000000
s hg38.chrX_KI270880v1_alt     69473 5 +    284869 AGGAA----
s panTro5.chrX                204037 5 + 155549662 AGGAA----
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138622 5 +    417917 AGGAA----
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026453 5 - 149150640 AGAAA----
i rheMac8.chrX             I 40 C 0
s macFas5.chr7             171705896 5 - 171882078 AGAAA----
i macFas5.chr7             I 13 C 0
s cerAty1.NW_012001098v1      128708 5 -   1025902 agaaA----
i cerAty1.NW_012001098v1   I 8 C 0
s chlSab2.chrUn_KE147541v1    112836 5 -    811265 agaaa----
i chlSab2.chrUn_KE147541v1 I 8 C 0
s otoGar3.GL873584            112021 5 +  11138919 ----ACTGT
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 53966 0 +   2853901 C
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macNem1.NW_012017243v1      179441 1088 +  25972781 I

a score=226411.000000
s hg38.chrX_KI270880v1_alt     69478 127 +    284869 GCCTTTCTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TTTTTAGGTTAACAACTGTC-AATGACGGAATGTTCA-GTACGTGGGACTTTCTTGTC--------TGTATGT-------------GTGTGGTGGGGG-------GG-G--T-------------------------------------------CGGGGCGGGGAACAGACTCAA
s panTro5.chrX                204042 128 + 155549662 GCCTTTCTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TTTTTAGGTTAACAACTGTC-AATGACGGAATGTTCA-GTACGTGGGACTTTCTTGTC--------TGTATGT-------------GTGTGGTGGGGG-------GG-G-GT-------------------------------------------CGGGGCGGGGAACAGACTCAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138627 129 +    417917 GCCTTTCTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TTTTTAGGTTAACAACTGTC-AATGACGGAATGTTCA-GTACGTGGGACTTTCTTGTC--------TGTATGT-------------GTGTGGTGGGGG-------GG-GGGT-------------------------------------------CGGGGCGGGGAACAGACTCAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026458 126 - 149150640 GCCTTTGTAC--CTTTC----T-AAATTGTGT-------------------------------------------------GA-TATTTAGGTTGACAACTGTC-AATGACGGAATGTTCA-GCAGGTGCAACTTTCTG-----------TGTGTGT-------------GTGTGGGGGGGG-------GC-GGGT-------------------------------------------CGGGGCGGGGAACAGACTCAA
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171705901 124 - 171882078 GCCTTTGTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TATTTAGGCTGACAACTGTC-AATGACGGAATGTTCA-GCAGGTGCAACTTTC-------------TGTGTGT-------------GTGTGGGGGGGG-------GC-GGGT-------------------------------------------CGGGGCGGGGAACAGACTCAA
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      180529 125 +  25972781 GCCTTTGTAC--CTTTA----T-AGATTGTGT-------------------------------------------------GATTATTTAGGTTGACAACTGTCAAATGACGGAATGTTCAGGCAGGTGCAACTTTC-----------------TGT-------------GTGTGGGGGGGG-------GC-GGGT-----------------------------------------CGCGGGCCGGGGAACAGACTCAA
i macNem1.NW_012017243v1   I 1088 C 0
s cerAty1.NW_012001098v1      128713 174 -   1025902 GCCTTTCTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TATTTAGGTTAACAACTGTC-AATGACGGAATGTTCA-GCAGGTGCAACTTTCTGGTC------TCtgtgtgt-------------gtgtgggggggg-------gc-gggtgtgtgtgtgtggggggggcgggtgtgtgtgtgtgGGGGGGGCTCGGGGCGGGGAACAGACTCAA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112841 131 -    811265 gCCTTCCTAC--CTTTA----T-AAATTGTGT-------------------------------------------------GA-TATTTAGGTTAACAACTGTC-AGTGACGGAATGTTCA-GTACGTGGGACCTTCTGGTC------TGTGTGTG--------------GGGTGTGGGGGG-------GCTGGGT-------------------------------------------CGGGGCGGGGAACAGACTCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 53966  91 +   2853901 -----cccac--ATTCA----TCAAATTGTGT-------------------------------------------------GA-C-----------------TC-AGTGACGGAATGTTCA-CTACGTGGGACTTT----------------------------------GGATGGGGGCGG-------GG-GGGA-------------------------------------------CGGGTGGAGAGACTGAC----
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            112026 206 +  11138919 CCCTCTCTACAAATTTACCACT-AAATTACGGACAAAACCTTAGGCGCTTTGAGTAAGAAAACAGAAATGGCTGAGAAATAGA-TTTTAAAAAAGCCAACCTAC-AA-AACTGAAAATTCT-GAAAGTGCGACCGACTTGAGGCTACACCTGTCCGTGACCAAACGGTCCGTGTGGGGGGGGCCTTCCTGA-GAGA-------------------------------------------CGGAGAGGGGACTAAA-----
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      215508 3172 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=106101.000000
s hg38.chrX_KI270880v1_alt     69605 28 +    284869 TATGAAACCGTTTTGGGGTCTGACGCTC
s panTro5.chrX                204170 28 + 155549662 TATGAAACCGTTTTGGGGTCTGACGCTC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138756 28 +    417917 TATGAAACCGTTTTGGGGTCTGACGCTC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026584 28 - 149150640 TATGAAACCGTTTTGGGGTCTGACGCTC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171706025 28 - 171882078 TATGAAACCGTTTTGGGGTCTGACGCTC
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      180654 28 +  25972781 TGTGAACCCGTTTTGGGGTCTGACGCTC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      128887 28 -   1025902 TATGAAACCGTTTTGGGGTCTGACGCTG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112972 28 -    811265 TATGAAACCGTTTTGGGGTCTGACGCTC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 54057 28 +   2853901 TATTAAACCGTTCTGGGGTCTCACGCTC
i calJac3.chrY             C 0 C 0
s cebCap1.NW_016107987v1      218680 28 -    735872 TATGAAACCGTTTTGGGGTCTGACGCTC
i cebCap1.NW_016107987v1   I 3172 I 8
s otoGar3.GL873584            112232 14 +  11138919 TGTCAAA--------------GACAGTA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=110350.000000
s hg38.chrX_KI270880v1_alt     69633 45 +    284869 GCCCACCAGCCTCCATCGCGCAGCCACACGCCCACTATGCGACCA
s panTro5.chrX                204198 45 + 155549662 GCCCACCAGCCTCCACCGCGCAGCCACACGTCCGCTATGCGACCA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138784 45 +    417917 GCCCACCAGCCTCCACCGCGCAGCCACACGTCCGCTATGCGACCA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026612 45 - 149150640 TCCCACCTGCCTCCACCGCGCAGCCACGCGTCCGCTAAGCTTCCA
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171706053 45 - 171882078 TCCCACCTGCCTCCACCGCGCAGCCACGCGTCCGCTAAGCTTCCA
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      180682 45 +  25972781 TCCCACCTGCCTCCACCGCGCAGCCACGCGTCCGCTAAGCTTCCA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      128915 45 -   1025902 TCCCACCTGCCTCCACCGCGCAGCCACGCGTCCGCTATGCTTCCA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    113000 45 -    811265 TCCCACCTGCCTCCACCGCGCAGCCACGCGTCCGCTCTGCTTCCA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 54085 29 +   2853901 TCCCGCCAGCCTCC----------------CCCACTCTGCGGCCA
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            112246 41 +  11138919 TCCCGCCGGCCTAGTCCACGCCG----ACCCCCATCACCCGGCCC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      218708  8 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=1821970.000000
s hg38.chrX_KI270880v1_alt     69678 473 +    284869 GAGCCACCTGCGCAGTTGTTAGCAGAAGGAAGAGT-AACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAACGTGGGGCGCGTTCCTGGGGCTGGAGGCGGCGCCCAGGGGCAGCGCAGGGCCCGGCCCGGGGGTTCCCGGGGGTTCGAGCCCGCTGGGCCGGGGGGCGGCGAGCGGGGCTGTGGGCCAGGCCCCGGGCTGCTCCCCGTCC-CCCGGGGTCGGCTGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGGACCGGCTGCAGCACTTTGCCGGGCGGCATGGCGGGGGCTGG-GCCCGCGGCG---CCCCCGGACGCCCG----CGCCCCGCCCCGCCCCGGGGGCTTCGG-TCCGCCCCGGACCGACCTCGGTGATGCGAGCACGGCCCGCTGAG
s panTro5.chrX                204243 472 + 155549662 GAGCCACCCGCGCAGTTGTTAGCAGAAGGAAGAGT-AACTTACTACTTTCGTTCCTGCAGATCTACGGGTCCCTCGACCGTGGGGCGCGTTCCTGGGGCTGGAGGCGGCGCCCGCGGGCAGCGCAGGGCCCGGCCCGGGGGTTCCCGGGGGCTCGAGCCCGCTGGGCCTGGGGGCGGCGAGCGGGGCTGTGGGCCAGGCCCCGGGCTGCTCCCCGTCC-CCCGCGGTCGGCTGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGGACCGGCTGCAGCACTTTGCCGGGCGGCATGGCGGGGGCTGG-GCCAGGGGCG---CCCCCGGACGCCCG----CGCCCCGCCCCGCCCCGGGGGCTTCGG-TCCGGCCCGGACCGACCTCGGTGATGCGAGCACGGCC-GCTGAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      138829 468 +    417917 GAGCCACCTGCGCAGTTGTTAGCAGAAGGAAGAGT-AACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCT-GGGCTGGAGGCGGCGCCCAGGGGCAGCGCAGGGCCCGG-CCGGGGATTCCCGGGGGTTCGAGCCCGCTGGGCCTGGGGGCGGCGAGCGGGGCTGTGGGCCAGGCCCCGGGCTGCTCCCCGTCC-CCCGCGGTCGGCTGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGGACCGGCTGCAGCACTTTGCCGGGCGGCATGGC-GGGGCTGG-GCCCGGGGCG---CCCCCGGACGCCCG----CGCCTCGCCCCGCCCC-GGGGCTTCGG-TCCGGCCCGGACCGACCTCGGTGATGCGAGCACGGCCCGCTGA-
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149026657 468 - 149150640 GAGCCACCTGCGCAGGTGTTAGCAGAAGGAAGAGT-CACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTGGGGCTGGAGGCGGCGCCCAGGGGCAGCGCGGGGCCCGGGCCGGGGGTTGCCGCGAGGTCGAGCCCGCCGGGTCTGGGGGCGGCGAGCGGGGCTGCGGGCCACACCCCGGGCAGCTCCCCGTCC-CCCGCGGTCGGCGGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGGACCTTGCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCGGAACGCCCG----CACCCCGCCCCG-----GGGGCTTCGG-TCCGGCCCGGACGGACCCGGGGGATGCGAGCCCCGCCTGCTGAG
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171706098 468 - 171882078 GAGCCACCTGCGCAGGTGTTAGCAGAAGGAAGAGT-CACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTggggctggaggcggcgcccaggggcagcgcggggcccgggccgggggttgccgcgaggtcgagcccgccgggtctcggggcggcgagcggggctgcgggccACACCCCGGGCAGCTCCCCGTCC-CCCGCGGTCGGCGGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTAGAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGGACCTTGCCGGGCGGCATGGCGGGGGCCGG-GCCCGGGGCG---CCCCGGAACGCCCG----CACCCCGCCCCG-----GGGGCTTCGG-TCCGGCCCGGACGGACCCGGGGGATGCGAGCCCCGCCTGCTGAG
i macFas5.chr7             C 0 M 609
s macNem1.NW_012017243v1      180727 468 +  25972781 GAGCCACCTGCGCAGGTGTTAGCAGAAGGAAGAGT-CACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTGGGGCTGGAGGCGGCGCCCAGGGGCAGCGCGGGGCCCGGGCCGGGGGTTGCCGCGAGGTCGAGCCCGCCGGGTCTGGGGGCGGCGAGCGGGGCCGCGGGCCAGACCCCGGGCAGCTCCCCGTCC-CCCGCGGTCGGCGGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTAGAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGGACCTTGCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCGGAACGCCCG----CACCCCGCCCCG-----GGGGCTTCGG-TCCGGCCCGGACGGACCCGGGGGATGCGAGCCCCGCCTGCTGAG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      128960 468 -   1025902 GAGCCACCTGCGCAGGTGTTAGCAGAAGGAAGAGT-GACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTGGGGCTGGAGGCGGCGCCCAGGGGCAGCGCGGGGCCCGGGCCGGGGGTGGCCGCGAGGTCCAGCCCGCCGGGTCTGGGGGCGGCGAGCGGGGCTGCGGGCCAGGCCCCGGGCGGCTCCCCGTCC-CCCGCGGTCCGCAGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGGACCTTGCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCGGAACGCCCG----CACCCCGCCCCG-----GGGGCTTCGG-TCCGGCCCGGACGGCCCCGGGCGATGCGAGCCCCGCCCGCTGAG
i cerAty1.NW_012001098v1   C 0 I 1
s chlSab2.chrUn_KE147541v1    113045 468 -    811265 GAGCCACCTGCGCAGGTGTCAGCAGAAGGAAGAGT-CACTTACTACTCTCGTCCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTggggctggaggcggcgcccaggggcagcgcggggcccgggccgggggttgccgcgaggtcgagcccgccgggtctgggggcggcgagcggggctgcgggccaggccccgggcAGCTCCCGGTCC-CCCGCGGTCGGCAGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGGCATTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGTACAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGCACCTTGCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCGGAACGCCCG----CACCCCGCCCCG-----GGGGCTTCGG-TCCGGCCCGGACGGACCTGCGTGATGCGAGCCCCGCCCGCTGAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 54114 450 +   2853901 GAGCCACGTGCGCGGGTGTCAGCAGAAGGAAGGGGAAACTTACTACCCTCGTGCCTGCCGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTGGGGCTGCAggcggcgcccaggggcagggcggggcccgggccgggggtccccggggggTCGAGCCCGCTGGGCCTGGGGGTGGCGGGCGGGGCTG------------CGGGCAGCTCCACGTCC-CCCGTGGCCGGCTGGTCTCGCGGGGGCGCCTTGATCCGGCGCAGGCAGTCCTGCAGCATTCGCTGCGTGCCGGCCTCGCTGAGCCAGCACAGGAACAGCTCGTCCACCTTCATCTTCAGCACCGGCTGCAGGATCTTCCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCCAGACTCCCCCAGACGCCCCGCCCGTCCCCGGGCGCTTCGGAAAACGCCCGGACGACCCTCGACGATGC-----------------
i calJac3.chrY             C 0 C 0
s cebCap1.NW_016107987v1      218716 442 -    735872 GAGCCACCTGCGAGGGTGTTAGTAGAAGGAAGAGG-AACTTACGACCCTCGTGCCTGCGGATCTACGGGTGCCTCGAGCGTGGGGCGCGTTCCTGGGGACGCAGGCGGCGCCCAGGGGCAGCGCGGGGCCCGGGCCGGGGGTCCCCGGGGGGTCGAGCCCgctgggcctgggggcggcgggcggggctg------------cgggctgcTCCGCGTCC-CCCGTGGCCGGCTGGTCCCGCCCGGGCGCCTTGATCCGGCGCAGACAGTCCTGCAGCATCCGCTGCGTGCTGGCCTCGCTGAGCCAGCAGAGGAACAGCTCGTCCACCTTCATCTTCAGCACGGGCTGCAGGGCCTTCCCGGGCGGCATGGCGGGGGCTGG-GCCCGGGGCG---CCCCAGGACGCC------CGCCCCGCCCCGCGCCGGGGGCTTCGG-TCCCGCTCAAACGGACCTCGGCGATGC-----------------
i cebCap1.NW_016107987v1   I 8 C 0
s otoGar3.GL873584            112287 400 +  11138919 ACGGCACTTTC-CCGCCGTTGG--------------CACTTACCGCTCGCGTCCCCGCCGATCTGCGAGCGCTCCGCGGGTGGGGCCCACTCCTGGGGCTCGAGGCGGCCCCCAGGGGCACAGCAGGGGCCGGGCTGGAAGTCCCGGGGCGGTCAGGCCCG--AGGTGGGGGGGCGGTG----------------------CGGGCGGCCCAGCATCTGGCTGCGGCC----------------GCGCCTGGATGCCGCGCAGACACTCTTGCAGCATGAGCTGCGTGCCGGCTTCGCTGAGCCAGCGCAGGAACAACTCGTCCACTTTCATCTTCAGCACCGGCTGCAGGACCTTTCCGGGCGGCATGGCTGGCTCAGAcccccggggcgcgccccccaggcccccg----cgccACGGCCGA-----GCAGACCCTG-GCA---CCTGAGGGGGCTGAGGGGCGCG----------------
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I

a score=51483.000000
s hg38.chrX_KI270880v1_alt     70151 15 +    284869 GGGGCGCGGCGCAGG
s panTro5.chrX                204715 15 + 155549662 GGGGCGCGGCGCAGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139297 15 +    417917 GGGGCGCGGCGCAGG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027125 15 - 149150640 GGGGCGCGGCGCAGG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181195 15 +  25972781 GGGGCGCGGCGCAGG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      129429 15 -   1025902 GGGGCGCCGCGCAGG
i cerAty1.NW_012001098v1   I 1 C 0
s chlSab2.chrUn_KE147541v1    113513 15 -    811265 GGGGCGCGGCGCAGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 54564 15 +   2853901 GGGGCCCGGCGCCGG
i calJac3.chrY             C 0 I 1046
s cebCap1.NW_016107987v1      219158 15 -    735872 GGGGCCCGGCGCGGG
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584            112687 15 +  11138919 GGGTGGCGGCGGAGG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=1166324.000000
s hg38.chrX_KI270880v1_alt     70166 415 +    284869 GAACAGGGCCCGCG-CCTCGGGAACTGCGCGGACTCGCG-----GGGCGCGGG--GACCG---AGGAGGGGG-CGCGGTCCGGCCCGCGCT---GCTCAGGGCAGCTTCAAAACGGGCGCGCCGGCCGCGCTCCCAAACAAGGGCGCCCGCGTTCACGTCACTGCGTCGCGTCA------TCGCGACGATGTCATCACGA---GGCGACGCCGCCGCTA--G----CCACGCG-CGCCCCGCGGCCCTCGGAGCTTTTGCAGGAGGCTTTGGTGGGG-CCGAGCGGCTGCGGTGAGGACGAGGGAGGGGCTGTGGCGGCCGTACCGCCCGAGCTCTTTCTGCGTTTAGGATTTTTAGAGGCGCGGCCCATGGCGGCGTGGCAGTC-CTAGAGCTGCGGAAATGCGAGCATGCGCAATGCGTGCC--TGCCAGAGCGAGGAGAGGGTGGAA-
s panTro5.chrX                204730 415 + 155549662 GAACAGGGCCCGCA-CCTCGGGAACTGCGCGGACTCGCG-----GGGCGCGGG--GACCG---AGGAGGGGG-CGCGGTCCGGCCCGCGCT---GCTCAGGGCAGCTTCAAAACGGGCGCGCCGGCCGCGCTCCCAAACAAGGGCGCCCGCGTTCACGTCACTGCGCCGCGTCA------TCGCGACGATGTCATCACGA---GGCGACGCCGCCGCTA--G----CCACGCG-CGCCCCGCAGCCCTCGGAGCTTTTGCAGGAGGCTTTGGTGGGG-CCAAGCGGCTGCGGTGAGGACGAGGGAGGGGCTGTGGCGGCCGTACCGCCCGAGCTCTTTCTGCGTTTAGGAGTTTTAGAGGCGCGGCCCACGGCGGCGTGGCAGTC-TTAgagctgcggacatgcgagcatgcgcaatgcgtgcc--tgccagagcgaggggagggtggaa-
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139312 416 +    417917 GAACA-GGCCCGCG-CCTCGGGAACTGCGCGGACTCGCG-----GGGCGCGGG--GACCG---AGGAGGGGG-CGCGGTCCGGCCCGCGCT---GCTCAGGGCAGCTTCAAAACGGGCGCGCCGGCCGCGCTCCCAAACAAGGGCGCCCGTGTTCACGTCACTGCGCCGCGTCA------TCGCGACGATGTCATCACGAGGCGGCGACGCCGCCGCTA--G----CCACGCG-CGCCCCGCGGCCCTCGGAGCTTTTGCAGGAGGCTTTGGTGGGG-CCAAGAGGCTGCGGTGAGGACGA-GGAGGGGCTGTGGCCACAGTACCGCCCGAGCTCTTTCTGCGTTTAGGATTTTTAGAGGCGCGGCCCATGGCGGCGTGGCAGTC-TTGGAGCTGCGGAGATGCGAGCATGCGCAATGCGTGCC--TGCCAGAGCGAGGGGAGGGTGGAA-
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027140 407 - 149150640 GAACAAGGCCCGCG-CCTCGGGAACTGCCCAGACTCGCG-----GGGTTCGGGGAGACCG---AGGACGGGG-CGCGGTCCGGCCCGCGCC---GCTCAGGGCAGCTTCAAAACGGGCGCG----------TCCCAAACAACGGCGCCCGCGTTCACGTCACTGCGCCGCGTCA------TCGCAACGACGTCATCACCG---GGCGACGCCGCCGCTG--GC---CCCCGCG-CGCACCGCGGCCCTCGGAGCCTTTGCAGGAGGCTTTGGTGGGG-CCAAGCGGCTGCGGTCAGGACGGAGGAGGGGCTGTGGCGGCCGTCCCGCCCGAGCCCTTTCTGCGTTTAGGAATTTAAGAGGTGCGGCCCATGGCGGCGAGGCGGCC-TTAGAGCGGCGGAGATGCGAGCATGCGCAATGCGTCCC--TGCCAGAGCGAGGGGAGGGGCAG--
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181210 407 +  25972781 GAACAAGGCCCGCG-CCTCGGGAACTGCGCAGACTCGCG-----GGGTTCGGGGAGACCG---AGGACGGGG-CGCGCTCCGGCCCGCGCT---GCTCAGGGCAGCTTCAAAACGGGCGCG----------TCCCAAACGACGGCGCCCGCGTTCACGTCACTGCGCCGCGTCA------TCGCGACGACGTCATCACCG---GGCGACGCCGCCGCTG--GC---CCCCGCG-CGCACCGCGGCCCTCGGAGCCTTTGCAGGAGGCTTTGGTGGGG-CCAAGCGGCTGCGGTCAGGACGGAGGAGGGGCTGTGGCGGCCGTCCCGCCCGAGCCCTTTCTGCGTTTAGGAATTTAAGAGGTGCGGCCCATGGCGGCGAGGCGGCC-TTAGAGCGGCGGAGATGCGAGCATGCGCAATGCGTCCC--TGCCAGAGCGAGGGGAGGGGCAG--
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      129444 406 -   1025902 GAACAAGGCCCGCG-CCTCGGGAACTGCGCAGACTCGCG-----GGGCGCGGGGAGACCG---AGGAGGGGG-CGCGGTCCGGCCCGCGCT---GCTCACGGCAGCTTCAAAACGGGCGCG----------TCCCAAACAACGGCGCCCGCGTGCACGTCACTGCGCCGCGTCA------TGGCGACGACGTCATCAGCG---GGCGACGACGCCGCCG--G----CCCCGCG-CGCACCGCGGCCCTCGGAGCGTTTGCAGGAGGCTTTGGTGGGG-CCAAGCGGCTGCGGTCAGGACGGAGGAGGGGCTGTGGCGGCCGTCCCGCCCGAGCTCTTTCTGCGTTTTGGGATTTCAGAGGTGCGGCCCATGGCGGCGAGGCGGCC-TTAGAGCGGCGGAGATGCGAGCATGCGCAGTGCGTGCC--TGCCAGAGCGAGGGGAGGGGCAG--
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    113528 421 -    811265 GAACAAGGCCCGCG-CCTCGGGAACTGCGCAGACTCGCG-----GGGCGCGGGGAGACCG---AGGAGGGGG-CGCGGTCCGGCCCGCGCT---GCTCAGGGCAGCTTCAAAACGGGCGCGCCGGCCGCGCTCCCAAACAACGGCGCCCGCGCTCACGTCACTGCGCCGCGTCA------TCGCGACGACGTCATCACGA---GGCGACGCCGCCGCCGCTGG---CCCCGCG-CGCACCGCGGCCCTCGGAGCCTTTACAGGAGGCTTTGGTGGGG-CCAAGCGGCTGCGGTCAGGACGGAGGAGGGGCTCTGGCGGCCGTCCCGCCCGAGCTCTTTCTGCGTTTTGGGATTTAAGAGGTGCGGCCCATGGCGGCGAGGCGGCC-TTAGAGCGGCGGAGATGCGAGCATGCGCAGTGCGTGCCTGTGCCAGAGCGAGGGGAGGGGCAG--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s calJac3.chrY                 55625 411 +   2853901 GAACAGAACCCACG-ACTCGGCAACTGCGGGGACTCGCG-----GGGCGCGGG--GACCCTGCAGAGGGGGG-CGCGGTCCTGCCCGCGCT---GCTCAAAGGAGCTTCAAAACGGGCGCGCCGGACGCGCTCCCAAACATGGGCGCCCGCGTT-GCGTCACTGCGTCGCGTCA------TCGCGACGACGTCATCACGA---CGCGACGGTGCCGCAC--G----CCAT--------CCGCGGACCTCGGAGCCTTTGCAGGAGGCTTTGCTGGGGTCCAAGCGGCTGCGGTGAGAACGGGGGAGACGCTGTGGCGGCCATGCAGCCAGAGATCTTTTGGCGGTTAGTATTTTTAGAGGCGCGGCCGATGGCGGCGAAGGGGCCTGAACAGCTGCGGAGACGCGAGCATGCGCAGTCCCTGCC--TGCCACAGGGAGGGGAGGGGAAC--
i calJac3.chrY             I 1046 C 0
s cebCap1.NW_016107987v1      219173 412 -    735872 GAACAGAACCCACGCCCCCGGCAACGCCGCGGACTCGCG-----GGGCGCGGG--GACCCT--AAAAAGGGG-CGCGGTCCGGCCCGCGCTGCGGCTCAGGGCAGCTTCAAAACGGGCGCGCCAGACGCGCTCCTCAACATGGGCGCCCGCGTT-ACGTCACTGCGTCGCGTCA------TCGCGACGACGTCATCACGA---GGCGACGTCGCCGCTG--G----CCAC--------CCGCGGCCCTTGAAGCCTTTGCAGGAGGCTTTCGTGGGGGCCAAGCGCCTGCGATGAGAACGGGGGAGAGGCTGTGGCGGGCATCCAGCCAGAGATCTTGTGGCGGTTAGGATTTTTAGAGGTGCGGCCCATGGCGGCGAAGCGGCC-GTAGAGCTGCGGAGATGTGAGCATGCGCAGTGCCTGCC--TGCCACAGGGAGGGGAGGGGAAC--
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584            112702 404 +  11138919 ----GCGCCGCGAG-CCTCGGG-GCTGCGCGGACTCGCGAGACCGGACCCGGGAGGGGCG---CGGCTGGGACCGCGGTTGGGCCCGAGCA---ACTCAAGACAGCTTCAAAATGGGCGCGCCGGCCGCGCTCCCACACACCGGTGCCCGCGTTAGCGTCATCGCG-CGCGACGACAGCTTGGCAATGATGTCATCGCGG--CGGCGACGGTGCGGCTC--GGTTTCCCCGCGCCTCGCTGCGG----CGGAGCATTTCAAGGAGACTTTTGTGGCC-CCGAGGGGCAGGGGTGAGCAAGGGGAACAG---------------------GAGGTCTTTCTACGCTTAGGTTTTTTAGGAGTGCGGCCCAAGAGAGCTAGACGGCA-TTAAGGACCGGGAGGTGCGAGCATGCGCGATGCACGCC--TGGCGGAGCAGTTACAGGGGCAA-C
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      193280 3465 +   1230721 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=89872.000000
s hg38.chrX_KI270880v1_alt     70581 21 +    284869 CCTCCGCATGGAGCATGCGCC
s panTro5.chrX                205145 21 + 155549662 cctccgcatggagcatgcgCC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139728 21 +    417917 CCTCCGCATGGAGCATGCGCC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027547 21 - 149150640 CCTCCGCATGGAGCATGCGCC
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181617 21 +  25972781 CCTCCGCGTGGAGCATGCGCC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      129850 21 -   1025902 CCTCCGCATGGAGCATGCGCC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    113949 21 -    811265 CATCCGCATGGAGCATGCGCC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1      196745 21 +   1230721 CCTCCGCATGGAGCATGCGCC
i colAng1.NW_012115411v1   I 3465 C 0
s calJac3.chrY                 56036 21 +   2853901 CCTGGGCATGGAGCATGCGCC
i calJac3.chrY             C 0 C 0
s cebCap1.NW_016107987v1      219585 21 -    735872 CCTGGGCATGGAGCATGCGCC
i cebCap1.NW_016107987v1   C 0 I 254
s otoGar3.GL873584            113106 21 +  11138919 TGGCTAGATGAAGCATGCGCC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=104201.000000
s hg38.chrX_KI270880v1_alt     70602 40 +    284869 GTGCATAGCGGTGGAGGAGCGGAGTTCGGGAGGCCGGTCG
s panTro5.chrX                205166 40 + 155549662 GTGCATACCGGTGGAGGAGCGGAGTTCAGGAGGCCGGTCG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139749 40 +    417917 GTGCATAGCGGTGGAGGAGCGGAGTTCGGGAGGCCGGTCG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027568 40 - 149150640 GTGCGTAGCGGTGGAGGCGCTTCGTTCGGGAGGCCGGTCG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181638 40 +  25972781 GTGCGTAGCGGTGGAGGCGCTTCGTTCGGGAGGCCGGTCG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      129871 40 -   1025902 GTGCGTAGCGGTGCAGGAGCTTCGTTCGGGTGGCCGGTCG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    113970 40 -    811265 GTGCGTAGCGGTGGAGGCGCTTCGTCCGGGAGGCCGGTCG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1      196766 40 +   1230721 TTGCCTAGCGGTGGAGGCGCTTCGTTCGGGAGGCCGGTCG
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56057 40 +   2853901 GTGCGTGCCGGTAGAGACGAGGCGTTCGGGAGGTTGGTGC
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            113127 37 +  11138919 GTG---AGTGCCACAGAAACAGAGTTTTGGAGTCCGTTCG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      219606 254 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=443965.000000
s hg38.chrX_KI270880v1_alt     70642 113 +    284869 GGTGAGCGTGCGCAATGGCTGCCCGCGGGGCGCAAGCCAGAGGCTGGGAGGTGTG---------------TGAGCGGGTG------GGGCT-----------GGAGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
s panTro5.chrX                205206 113 + 155549662 GGTGAGCATGCGCAGTGGCTGCCCGCGGGGCGCAAGCCAGAGGCTGGGAGGTGTG---------------TGAGCGGGTG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGgaacg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139789 113 +    417917 GGTGAGCATGCGCAGTGGCTACCCGCGGGGCGCAAGCCAGAGGCTGGGAGGTGTG---------------TGAGCGGGTG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027608 113 - 149150640 GGTGAGCATGCGCAGTGCCTGCCCGCGGGGCGCGAGGCAGAGGCTGGAAGGTGTG---------------TGAGCGGGCG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181678 113 +  25972781 GGTGAGCATGCGCAGTGCCCGCCCGCGGGGCGCGAGGCAGAGGCTGGAAGGTGTG---------------TGAGCGGGCG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      129911 113 -   1025902 AGTGAGCATGCGCAGTGCCTGCCCCCGGGGCGCGAGGCAGAGGCTGGAAGGTGTG---------------TGAGCGGGCG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114010 113 -    811265 GGTGAGCATGCGCAGTGCCTGCCCGCGGGGCGCGAGGGCGAGGCTGGAAGGTGTG---------------TGAGCGGGCG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGAACG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1      196806 113 +   1230721 GATGCGCATGCGCAGTGCTTGCCCGCGAGGCGCGCGCCAGAGGCTGGAAGGTGTA---------------TGAGCGGGCG------GGGCT-----------GGGGGACGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCAGCGGGAACG
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56097 124 +   2853901 GATGAGCACGCGCAGTGCCTGCCCGCGGGGCGCGAGCCTCAGGCCGGGAGATGTG---------------TGAGCGGGCG------GGGCTGTGGGGGGGGGGGGGGATAGGACT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGGACG
i calJac3.chrY             C 0 C 0
s cebCap1.NW_016107987v1      219860 113 -    735872 GGTGAGCATGCGCAGTGCCTGCCCGCGGGGCGCGAGCCGCAGGCTGGGAGGTGTG---------------TGAGCGGGCG------GGGCT-----------GGGGGATGGGAGT------------------GCGCCTGCGCA-GTGGGAGGCACCGGGGACG
i cebCap1.NW_016107987v1   I 254 I 194
s otoGar3.GL873584            113164 147 +  11138919 GTCGAGCATGCGCAATGCGTGCACGC------CAGAGCCGGGGTGGGGAGGTTTGAGTGACCAACTCGATGGAGCATGCGCCATGCGTGCT-----------GTGGAAGCGCAGTTTGAGAGGCCGGTGGATCGGGCCTGCACACGTGAGCGCCCCCGGGAGCG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e saiBol1.JH378345            151037 3531 +    465904 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=22507.000000
s hg38.chrX_KI270880v1_alt     70755 12 +    284869 AGCGAGCATGCG--------
s panTro5.chrX                205319 12 + 155549662 agcgagcgtgcg--------
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139902 12 +    417917 AGCGAGCATGCG--------
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027721 12 - 149150640 AGCGAGCATGCG--------
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      181791 12 +  25972781 AGCGAGCGTGCG--------
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130024 12 -   1025902 AGCGAGCATGCG--------
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114123 12 -    811265 AGCGAGCATGCG--------
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1      196919 12 +   1230721 AGCGAGCATAAG--------
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56221 11 +   2853901 -GGAGGGTTGCG--------
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            113311 16 +  11138919 ----CGCCTAAGGCCTAGAG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      219973 194 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e macFas5.chr7             171706566 609 - 171882078 M

a score=50225.000000
s hg38.chrX_KI270880v1_alt     70767 10 +    284869 GGGTGCGCGC
s panTro5.chrX                205331 10 + 155549662 gggtgcgcgc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139914 10 +    417917 GGGTGCGCGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027733 10 - 149150640 GGGTGCGCGC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707175 10 - 171882078 GGGTgcgcgc
i macFas5.chr7             M 609 C 0
s macNem1.NW_012017243v1      181803 10 +  25972781 GGGTGCGCGC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130036 10 -   1025902 GGGTGCGCGC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114135 10 -    811265 GGGTGCGCGC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1      196931 10 +   1230721 GGGTgcgcgc
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56232 10 +   2853901 GGGTGCGCGC
i calJac3.chrY             C 0 C 0
s otoGar3.GL873584            113327 10 +  11138919 GTGTGAGCGC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       41438 2023 -    350446 I
e cebCap1.NW_016107987v1      219973 194 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I

a score=256759.000000
s hg38.chrX_KI270880v1_alt     70777  67 +    284869 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGCGTCCTAC-------GGGAGCGCGCGAGGAAAAGATCA----AACTTTTCAATA-
s panTro5.chrX                205341  67 + 155549662 -----------------------------------------ccgccgagctcgggagcgagcgtgcgtcctgc-------gggagcgcgcgagGAAAAGATCA----AACTTTTCAATA-
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139924  67 +    417917 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGCGTCCTGC-------GGGAGCGCGCGAGGAAAAGATCA----AACTTTTCAATA-
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027743  70 - 149150640 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGCGGCCTGC-------GGGAGCGCGCGGGGGAAAAATAAACGCAACTTTTCAAT--
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707185  70 - 171882078 -----------------------------------------ccgccgagctcgggagcgagcgtgcggcctgc-------gggagcgcgcgGGGGAAAAATAAATGCAACTTTTCAAT--
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      181813  70 +  25972781 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGCGGCCTGC-------GGGAGCGCGCGGGGGAAAAATAAATGCAACTTTTCAAT--
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130046  70 -   1025902 -----------------------------------------CCGCCGAGGTCGGGAGCGAGCGTGCGGCCGGC-------GGGAGCGCGCGGGGGAAAAATAAACGCAACTTTTCAAT--
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114145  70 -    811265 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGGGGCCTGC-------GGGAGCGCGCGGGGGAAAAATCAACGCAACTTTTCTAT--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43461  70 -    350446 -----------------------------------------CCGCCGAGCTCGGGAGCGAGCGTGCGGCCGGC-------GGGAGCGCGCGGGGGAAAAATAAACGCAACTTTTCAAT--
i manLeu1.NW_012108508v1   I 2023 C 0
s colAng1.NW_012115411v1      196941  69 +   1230721 -----------------------------------------ccgccgggctcgggagcgcgcgtgcgtcctgc-------gggagcgcgcgGGGAAAAAAACCCCG-AATTTTTCAAT--
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56242  62 +   2853901 ------------------------------------------CCCCGAGCACGGGAGCGAGCGTGCGTACTGC-------GGGAGCGCGCGAGGCGAAGGCAG-------TTTTCAAT--
i calJac3.chrY             C 0 I 185
s otoGar3.GL873584            113337 117 +  11138919 CGAGAGAGGCGGGACATGATGAAGCTCACGCGCAATGGGTGGTGCCGTGCGCAGGAGCGAACATGCGAGGTGCGAGCCCTGGGAGCGCGCTCGAAACCTAGAAATGC--TTTTTCGAT-A
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      219973 194 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I

a score=92451.000000
s hg38.chrX_KI270880v1_alt     70844 26 +    284869 ACAGCGGGCTACCTGGGACCCAAAGG
s panTro5.chrX                205408 26 + 155549662 ACAGCGGGCTACCTGGGACCCAAAGG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      139991 26 +    417917 ACAGCGGGCTACCTGGGACCCAAAGG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027813 26 - 149150640 ATAACGGGCTCCGTGGGACCCAAAGG
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707255 26 - 171882078 ATAACGGGCTCCGTGGGACCCAAAGG
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      181883 26 +  25972781 ATAACGGGCTCCGTGGGACCCAAAGG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130116 26 -   1025902 ATAACGGGCTCCGTGGGACCCAAAGG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114215 26 -    811265 ATAACGGGCTCCGTGGGACCCACAGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43531 26 -    350446 ATAACGGGCTCCGTGGGAGCCAAAGG
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197010 26 +   1230721 ATAACGGGCTACGTGGGACCCAAAGG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584            113454 24 +  11138919 -AAACGTGCTGTTTCTGACCGAAGC-
i otoGar3.GL873584         C 0 C 0
e calJac3.chrY                 56304 185 +   2853901 I
e cebCap1.NW_016107987v1      219973 194 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I

a score=97275.000000
s hg38.chrX_KI270880v1_alt     70870 22 +    284869 GCCCCGTTTACTTTAGCTTTGC
s panTro5.chrX                205434 22 + 155549662 GCCCCGTTTACTTTAGCTTTGC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140017 22 +    417917 GCCCCGTTTACTTTAGCTTTGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027839 22 - 149150640 GCCCCGTTTCTGTTAGCTTTGC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707281 22 - 171882078 GCCCCGTTTCTGTTAGCTTTGC
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      181909 22 +  25972781 GCCCCGTTTCTGTTAGCTTTGC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130142 22 -   1025902 GCCCCGTTTCTGTTAGCTTTGC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114241 22 -    811265 GCCCCGTTTCTGGCAGCTTTGC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43557 22 -    350446 GCCCCGTTTCTGTTAGCTTTGC
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197036 22 +   1230721 GCCCCGTTTCTGTTCGCTTTGC
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56489 22 +   2853901 GCTCCCTTTATGTCAGTTTTAT
i calJac3.chrY             I 185 C 0
s otoGar3.GL873584            113478 22 +  11138919 ACCCCGTTTGCAGCAATTTTGT
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      219973 194 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I

a score=169193.000000
s hg38.chrX_KI270880v1_alt     70892 28 +    284869 TTATCAAACAGTAGAGACAGGTTGGAGG
s panTro5.chrX                205456 28 + 155549662 TTATCAAACAGTAGAGACAGGTTGGAGG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140039 28 +    417917 TTATCAAACAGTAGAGACAGGTTGGAGG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027861 28 - 149150640 TTATCAGACAGTAAAGACAGGTTGGAGG
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707303 28 - 171882078 TTATCAGACAGTAAAGACAGGTTGGAGG
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      181931 28 +  25972781 TTATCAGACAGTAAAGACAGGTTGGAGG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130164 28 -   1025902 TTATCAGACAGTAAAGACAGGTTGGAGG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114263 28 -    811265 TTATCAGACAGTAAAGACAGGTTGGAGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43579 28 -    350446 TTATCAGACAGTAAAGACAGGTTGGAGG
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197058 28 +   1230721 TTGTCGAACAGTAAAGACAGGTTGGAGG
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56511 28 +   2853901 GTATCAAACAGTCAAGACAGATCAGAGG
i calJac3.chrY             C 0 C 0
s cebCap1.NW_016107987v1      220167 28 -    735872 TTATCAAACAGTCAAGACAGATCAGAGG
i cebCap1.NW_016107987v1   I 194 C 0
s otoGar3.GL873584            113500 28 +  11138919 TCATCCAACAGGAACGATAGGTTGGAGG
i otoGar3.GL873584         C 0 I 278
e saiBol1.JH378345            151037 3531 +    465904 I

a score=565429.000000
s hg38.chrX_KI270880v1_alt     70920 133 +    284869 AGTTGGACCCCTTTAAACGTTG-GTGTTCAGGGATGAGCGTGAAGTGCGTTGAAAATTGCAAAA---ATCATCCACGTCCAGGGAGGTGACATTAG----TTAAATAAC--TTTACCCAATGGTCGTTT--------TTGTTTCTGC-TTTT
s panTro5.chrX                205484 133 + 155549662 AGTTGGACCCCTTTAAACGTTG-GTGTTCAGGGGTGAGCGTGAAGTGCGTTGAAAATTGCAAAA---ATCATCCACGTCCAGGGAGGTGACATTAG----TTAAATAAC--TTTACCCAATGGTTGTTT--------TTGTTTCTGC-TTTT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140067 133 +    417917 AGTTGGACCCCTTTAAACGTTG-GTGTTCAGGGATGAGCGTGAAGTGCGTTGAAAATTGCAAAA---ATCATCCACGTCCAGGGAGGTGACATTAG----TTAAATAAC--TTTACCCAATGGTTGTTT--------TTGTTTCTGC-TTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149027889 137 - 149150640 CGTTGGACCCCTGTAAACGTTG-GAGTGCTGGGATGAGCGTCCACTGCTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGGATGTGACGTTAGTTCTTTAAATAAC--TTGACCCAGGAGTTGTGT--------CTGTTTGTGC-TTTC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707331 137 - 171882078 CGTGGGACCCCTGTAAACGTTG-GAGTGCTGGGATGAGCGTCCACTGCTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGGATGTGACGTTAGTTCTTTAAATAAC--TTGACCCAGGAGTTGTGT--------CTGTTTGTGC-TTTC
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      181959 137 +  25972781 CGTGGGACCCCTGTAAACGTTG-GAGTGCTGGGATGAGCGTCCACTGCTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGGATGTGACGTTAGTTCTTTAAATAAC--TTGACCCAGGAGTTGTGT--------GTGTTTGTGC-TTTC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130192 137 -   1025902 CGTTGGACCCCTGTAAACGCTG-GAGTGCTAGGATAAGCGTCCAATGCTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGAACCTGACATTAGTTCTTTAAATAAC--TTGACCCAGGGGTTGTGT--------GTGTTTGTGC-TTTC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114291 137 -    811265 CGTTGGACCCCTGTAAACGTTG-GAGTTCTGGGATGAGCGTCCATTGCTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGGACCTGACGTTAGTTCTTTAAATCAC--TTGACCCAGGGGTTGTGT--------GTGTTTGTGC-TTTC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43607 138 -    350446 CGTTGGACCCCTGTAAACGCTG-GAGTCCTGGGATGAGCGTCCAATGGTTTGAAAATTGCAAAA---ATCGTCTACGTCCGGGGACCTGACGTTAGTTCTTTAAATAAC--TTGACCCAGGGGTCGTGT--------TTGTTTGTCCTTTTC
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197086 137 +   1230721 CGTTGGACCCCATTAAACGTCG-GAGTTCTGGGATGAGCGTCCACTGCTTTGAAAATTGCAAAA---CTCATCTGCGTCCGGGGACGTGACGTTGGTTATTTAAATCAT--TTGACCCCGTGGTTGTGT--------CTCTCTCTGC-TTTT
i colAng1.NW_012115411v1   C 0 C 0
s calJac3.chrY                 56539 126 +   2853901 GGTCTGACGCCTTTAAACGCCG-------------CAGTGTGAACTGATTTCAAAACTGCAAAA---ATCCTTCATGTCCAGGGAGGTGACGTTAGTTATTTAAATGAC--TTTTCCCATTGCATATTT-------CCCGTTCCTGC-Cttt
i calJac3.chrY             C 0 N 0
s cebCap1.NW_016107987v1      220195 136 -    735872 GGTTTGACACCTTTAAACGCTGGTCTTAACGGGATGAGCATGAACTGCTCTGAAAATTGCAAAA---ATCGTCGGTGTCCACGGAGGTGATGTTAG----TTAAGTGAC--TTTTCCCAATGCGTATTT------CCCCGTTCCTGC-TTTT
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584            113806 146 +  11138919 AGTTCGACTTCTTTAAACACTG-GCTTTCTGGGATAGCGGTGAACGGCTCTGATAATTGCAAAAATCATCATCTCTGTCTAGGGAAGTGATATTAT----TTAAATGCCTTTTTGCCCAAGCAGTACTTTATTATTATTATTTCTAC-TGTT
i otoGar3.GL873584         I 278 C 0
e saiBol1.JH378345            151037 3531 +    465904 I

a score=362930.000000
s hg38.chrX_KI270880v1_alt     71053  97 +    284869 AACAGTATCCATAAAAACACTGCATTATCATCTGTCTGGCACACATGCACCTGTTTCCTTTACATCTTG------------------------CCCCGC-TTTTTATTCAT-TTTTT-------ATCAAA
s panTro5.chrX                205617  97 + 155549662 AACAGTATCCATAAAAACACTGCATTATCATCTGTCTGGCACACATGCACCTGTTTCCTTTACAGCTTG------------------------CCCCGC-TTTTTATTCAT-TTTTT-------ATCAAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140200  97 +    417917 AACAGTATCCATAAAAACACTGCATTATCATCTGTCTGGCACACATGCACCTGTTTCCTTTACATCTTG------------------------CCCCGC-TTTTTATTCAT-TTTTT-------ATCAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028026 103 - 149150640 AACAGTGTCCATCAAGACATTGCATTATCCTCTCTCTGGCACACATGCACCTCTTTCCTTTACGTCTTCCCC--------------------ACCCCCCACTTTTATTCATGTTTTT-------ATCAAA
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707468 102 - 171882078 AACAGTGTCCATCAAGACATTGCATTATCCTCTCTCTGGCACACATGCACCTCTTTCCTTTACGTCTTCCCC--------------------ACCCCCC-CTTTTATTCATGTTTTT-------ATCAAA
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182096 102 +  25972781 AACAGTGTCCATCAAGACATTGCATTATCCTCTCTCTGGCACACATGCACCTCTTTCCTTTACGTCTTCCCC--------------------ACCCCCC-CTTTTATTCATGTTTTT-------ATCAAA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130329 100 -   1025902 AACAGTGTCCATCAAGACATTGCATTATCCTCTCTCTGGCACACATGCACGTCTTTCCTTTACGTCTTGCC----------------------CCCCTC-CTTTTATTCATGTTTTT-------ATCAAA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114428 101 -    811265 AACAGTGTCCGTCAAGACATTGCGTTATCTTCTCTGTGGCACACATGCACCTCTTTCCTTTACGTCTTGCTC---------------------CCGACC-CTTTTAATAATGTTTAT-------ATCAAC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43745 101 -    350446 AACAGTGTCCATCAACACATTGCATTATCTTCTCTCTGGCACACATGCACCTCTTTCCTTTACGTCTTCCCC---------------------CCCACC-CTTTTATTCATATTTTT-------ATCAAA
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197223 101 +   1230721 AACAGTATCTA-AAAGACACTGCATTATCCTCTCTCTGGCACACATGCACCGCTTTCCTTTACGTCTTGCCC---------------------CCCCTC-CTTTTATTAATTTTTTT------AATCAAA
i colAng1.NW_012115411v1   C 0 C 0
s cebCap1.NW_016107987v1      220331 105 -    735872 AACAGTGCCCATAAAGAGGCTGCGTCATCATCCATCTCACACACATGCAACTGTTTCTTTCATGACTTG------------------------CCCCCG-TTTTCATTACTTTTTTTTTTTTTAATCAAA
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584            113952 120 +  11138919 --AAGTGTCTGCAAAGGCAGCGCGTTGTCATCCATCCTGCGCATATGTGCCTCTTTCCCATAGATCTTGCCCTTTTTTGTGAGATCTTTTCTTTCTTTC-CTTtttttttttttttg-------gccaag
i otoGar3.GL873584         C 0 I 102
e saiBol1.JH378345            151037 3531 +    465904 I

a score=490085.000000
s hg38.chrX_KI270880v1_alt     71150 106 +    284869 ATAGGGTTTCACCTGGTGTTGCACCCTGTTAGAGAGTA-ATTTCAAGGTCTTTTATGAGCCAGGTTCTCCTACTTCTGAGCTGCATAAATCGAGCCAGACTCAATAA
s panTro5.chrX                205714 106 + 155549662 ATAGGGTTTCACCTGGTGTTGCACCCTATTAGAGAGTA-ATTTCAAGGTCTTTTATGAGCCAGGTTCTCCTACTTCTGAGCTGCATAAATCGAGCTAGACTCAATAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140297 106 +    417917 ATAGGGTTTCACCTCGTGTTGCACCCTATTAGAGAGTA-ATTTCAAGGTCTTTTATGAGCCAGGTTCTCCTACTTCTGAGCTGCATAAATCGAGCTAGACTCAATAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028129 104 - 149150640 ATAGGGTTTCAGCTGGGTTTGCACCCTTTT--AGAGTA-AATTCAAGGTCTTTTATGAGCCAGGGTCTCCTACTTCTGAGCTGCATCAATCCAGCTAGACTCAATAA
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707570 104 - 171882078 ATAGGGTTTCAGCTGGGTTTGCACCCTTTT--AGAGTA-AATTCAAGGTCTTTTATGAGCCAGGGTCTCCTACTTCTGAGCTGCATCAATCCAGCTAGACTCAATAA
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182198 104 +  25972781 ATAGGGTTTCAGCTGGGTTTGCACCCTTTT--AGAGTA-AATTCAAGGTCTTTTATGAGCCAGGGTCTCCTACTTCTGAGCTGCATCAATCCAGCTAGACTCAATAA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130429 104 -   1025902 ATAGGGTTTCAGCTGGTTTTGCACCCTTTT--AGAGTA-AATTCAAGGTCTTTTATGAGCTAGGGTCTCCTATTTCTGAGCTGCATCAATCGAGCTAGACTCAATAA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    114529 104 -    811265 ATAGGGTTTTAGCTGGTTTTGCCCCTTTTT--AGAGTA-AATTCAAGGTCTTTTATGACCCAGGGTCTCCTACTTCTGAGCTGCATCAATCGAGCTAGACTCAATAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       43846 104 -    350446 ATAGGGTTTCAGCTGGGTTTGCATCCTTTT--AGAGTA-AATTCAAGGTCTTTTATGAACCACGTTCTCCTACTTCTGAGCTGCATCAATCGAGCTAGACTCAATAA
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197324 104 +   1230721 ATAGGGTTTCAGCTGGTTTTGCACCCTTTC--AGAGTA-CATTCAAGGTCTTTTATGAGCCAGATTCTCCTACTTCTGAGCTGCATCAATCGAGCTAGACTCAATAA
i colAng1.NW_012115411v1   C 0 C 0
s cebCap1.NW_016107987v1      220436 106 -    735872 ATTGGGTTTCACCCTGTTTTGCATCCTGTTAGAGAGTA-ATTTCAAGGTGTTTTGTGAGCCAGGTTCTGCTACTTCTGAGGTGTAGAAATCGAGCTAGACTCAATAA
i cebCap1.NW_016107987v1   C 0 I 627
s otoGar3.GL873584            114174 104 +  11138919 AAAGGGTTCCCCATGGTTTTGCCCCCTTTT--AGCGGAGATTTCAAGGCCTTTTCTGCACTGGGTTCTCC-ACTTCTGAGCTGTGTGGGTAGAGCCAGACTCACCAA
i otoGar3.GL873584         I 102 C 0
e saiBol1.JH378345            151037 3531 +    465904 I

a score=4190.000000
s hg38.chrX_KI270880v1_alt     71256 1 +    284869 G
s panTro5.chrX                205820 1 + 155549662 G
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140403 1 +    417917 G
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028233 1 - 149150640 G
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707674 1 - 171882078 G
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182302 1 +  25972781 G
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130533 1 -   1025902 G
i cerAty1.NW_012001098v1   C 0 I 37
s chlSab2.chrUn_KE147541v1    114633 1 -    811265 G
i chlSab2.chrUn_KE147541v1 C 0 T 4327
s manLeu1.NW_012108508v1       43950 1 -    350446 G
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1      197428 1 +   1230721 G
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584            114278 1 +  11138919 A
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I

a score=5096.000000
s hg38.chrX_KI270880v1_alt     71257 2 +    284869 TA
s panTro5.chrX                205821 2 + 155549662 TA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140404 2 +    417917 TA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028234 2 - 149150640 TA
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      182303 2 +  25972781 TA
i macNem1.NW_012017243v1   C 0 C 0
s manLeu1.NW_012108508v1       43951 2 -    350446 TA
i manLeu1.NW_012108508v1   C 0 I 23
s colAng1.NW_012115411v1      197429 2 +   1230721 TA
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584            114279 2 +  11138919 TA
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534 37 -   1025902 I
e macFas5.chr7             171707675 0 - 171882078 C

a score=1911.000000
s hg38.chrX_KI270880v1_alt     71259 1 +    284869 A
s panTro5.chrX                205823 1 + 155549662 A
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140406 1 +    417917 A
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028236 1 - 149150640 A
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      182305 1 +  25972781 A
i macNem1.NW_012017243v1   C 0 C 0
s colAng1.NW_012115411v1      197431 1 +   1230721 A
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584            114281 1 +  11138919 A
i otoGar3.GL873584         C 0 I 2
e manLeu1.NW_012108508v1       43953 23 -    350446 I
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534 37 -   1025902 I
e macFas5.chr7             171707675 0 - 171882078 C

a score=6485.000000
s hg38.chrX_KI270880v1_alt     71260 5 +    284869 CCCTT
s panTro5.chrX                205824 5 + 155549662 CTCTT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140407 5 +    417917 CTCTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028237 5 - 149150640 CTCTT
i rheMac8.chrX             C 0 I 17
s macNem1.NW_012017243v1      182306 5 +  25972781 CTCTT
i macNem1.NW_012017243v1   C 0 I 17
s colAng1.NW_012115411v1      197432 5 +   1230721 CTCTT
i colAng1.NW_012115411v1   C 0 I 3029
e manLeu1.NW_012108508v1       43953 23 -    350446 I
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282 2 +  11138919 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534 37 -   1025902 I
e macFas5.chr7             171707675 0 - 171882078 C

a score=78349.000000
s hg38.chrX_KI270880v1_alt     71265 301 +    284869 ggccgggcgcggtggctcaagtctgtaatcccggcactttgggaggctgaagcgggcagatcacgaagtcaggagttcgagaccagcctggccagcatagtgaaaccgcccccaccatctctactaaaaatagaaaaattagccgggcatagtagcgtgtgcctgtagtcccagctactcgggaggctgtggcgggagaattgcttgaacccaggaggtggaggttgcagtgagctgagatcacaccattgcactccagcctgggcgacagagccagactttgtctcaaaaaaaaaaaaaa-
s panTro5.chrX                205829 296 + 155549662 ggccgggcgcggtggctcacgtctgtaatcccagcactttgggaggctgaagcgggcagatcacgaagtcaggagttggagaccagcctggccagcatagtgaaaccccc------atctctactaaaaatacaaaaattagccgggcatggtggcgtgtgcctgtagtcccagctactcgggaggctgaggcgggagaattgcttgaacccaggaggtggaggttgcagtgagctgagatcacaccattgcactccagcctgggcgacagagccagactttgtctcaaaaaaaaaaaaaaG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140412 294 +    417917 GGCT-ggcgcggtggctcacgtctgtaatcccagcactttgggaggctgaagcgggcagatcacgaagtcaggagttcgagaccagcctggccagcatagtgaaaccccc------atctctactaaaaatacaaaaattagccgggcatggtggcgtgtgcctgtagtcccagctactcgggaggctgtggcgggagaattgcttgaacccaggaggtggaggttgcagtgagctgagatcacaccattgcactccagcctgggcgacagagccagactttgtctcaaaaaaaaaaaaaG-
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1       43953  23 -    350446 I
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282   2 +  11138919 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534  37 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149028242  17 - 149150640 I
e macNem1.NW_012017243v1      182311  17 +  25972781 I
e macFas5.chr7             171707675   0 - 171882078 C

a score=6993.000000
s hg38.chrX_KI270880v1_alt     71566 16 +    284869 taaCtctttttt-tagt
s panTro5.chrX                206125 16 + 155549662 TAACtctttttt-tagt
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140706 16 +    417917 TAACtctttttt-tagt
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chr7             171707675 17 - 171882078 TAACTCTTTTTTGGAGT
i macFas5.chr7             C 0 I 8
e manLeu1.NW_012108508v1       43953 23 -    350446 I
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282  2 +  11138919 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534 37 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149028242 17 - 149150640 I
e macNem1.NW_012017243v1      182311 17 +  25972781 I

a score=9413.000000
s hg38.chrX_KI270880v1_alt     71582 11 +    284869 tttatt--ttttt
s panTro5.chrX                206141 13 + 155549662 tttattatttttt
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140722 13 +    417917 tttattttttttt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028259 11 - 149150640 tttatttattt--
i rheMac8.chrX             I 17 C 0
s macFas5.chr7             171707700 11 - 171882078 tttatttattt--
i macFas5.chr7             I 8 C 0
s macNem1.NW_012017243v1      182328 11 +  25972781 tttatttattt--
i macNem1.NW_012017243v1   I 17 C 0
s manLeu1.NW_012108508v1       43976 11 -    350446 tttatttattt--
i manLeu1.NW_012108508v1   I 23 C 0
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282  2 +  11138919 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e cerAty1.NW_012001098v1      130534 37 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=280577.000000
s hg38.chrX_KI270880v1_alt     71593 117 +    284869 tttgagttggagtctcgctctgtcgcccaggctggagtgcgatggcaagatctcagctcactgtaacctccgcctcccgggttcaagggatcctcctgcctcagcctcccgagtagc
s panTro5.chrX                206154 117 + 155549662 tttgagttggagtctcgctctgtcgcccaggctggagtgcgatggcaagatctcagctcactgtaacctccgcctcccgggttcaagggatcctcctgcctcagcctcccgagtagc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140735 117 +    417917 tttgagttggagtctcgctctgttgcccaggctggagtgcgatggcaagatctcagctcactgtaacctccgcctcccgggttcaagggatcctcctgcttcagcctcccgagtagc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028270 117 - 149150640 attgagatggagcctcgctctgttgcccgggctgcagtgcaatggtgagatctcggctcactgcagcctctgcctcctgggttcaagggatcctcctgcctcagcctcctgagcagc
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707711 117 - 171882078 attgggatggagcctcgctctgttgcccgggctggagtgcaatggtgagatctcggctcactgcagcctctgcctcctgggttcaagggatcctcctgcctcagcctcctgagcagc
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182339 117 +  25972781 attgagatggagcctcgctctgttgcccgggctggagtgcaatggtgagatctcggctcactgcagcctctgcctcctgggttcaagggatcctcctgcctcagcctcctgagcagc
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130571 117 -   1025902 tttgagttggagcctcgctctgttgcccgggctggagtgcaatggtgagatctcggctcactgcaacctctgcctcctgggttcaagggatcctcctgcctcagcctcccgagcagc
i cerAty1.NW_012001098v1   I 37 C 0
s manLeu1.NW_012108508v1       43987 117 -    350446 attgagatggagcctcgctctgttgcccgggctggagtgcaatggtgagatctcggctcactgcaacctctgcctcctgggttcaagggattctcctgcctcagcctcctgagcagc
i manLeu1.NW_012108508v1   C 0 C 0
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282   2 +  11138919 I
e chlSab2.chrUn_KE147541v1    114634 4327 -    811265 T
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=1145468.000000
s hg38.chrX_KI270880v1_alt     71710 375 +    284869 tgggattacaggcgcccgccaccacgcctggctaa-tttttgtatttttggtagagacagggtttcaccgtattagccaggatggtctcgaactcctgacctcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagctaccacgcccggccTAAATAACtctttttgttcgtatgagacagggttttgctccgtcacccaggctgcgatcttagctgagtgcagccttgatctcctggctcaagcgatcctcccacctcagccttccaagcagctgggacaacaggcatgcgccaccatgcctggctcatttttaattttattgtttatagagacgaggtgtt--------------gctggtctcacactc
s panTro5.chrX                206271 375 + 155549662 tgggattacaggcgcccaccaccacgcctggctaa-tttttgtatttttggtagagacagggtttcaccgtattagccaggatggtctcgaactcctgacctcaagtgatccacccacctcggcctcccagagtgctgggattacaggcatgagctaccatgcccggccTAAATAACtctttttgttcgtttgagacagggttttgctccatcacccaggctgcgatcttagctcagtgcagccttgatctcctggctcaagtgatcctcccacctcagccttccaagcagctgggacaacaggcacgcgccaccatgcctggctcatttttaattttattgttgatagagacgagatctt--------------gctggtctcacactc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      140852 374 +    417917 tgggattacaggcgcccgccaccacgcctggctaa-tttttgtatttttggtagagacagggtttcaccgtattagccaggatggtctcgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggatgacaggcgtgagctaccacgcccagccT-AATAACtctttttgttcgtttgagacagggttttgctccgtcacccaggctgcgatcttagctcagtgcagccttgctctcctggctcaagcgatcctcccacctcagccttccaagcagctgggacaacaggcacgcgccaccatgcctggctaatttttaattttattgtttatagagacgaggtctt--------------gctggtgtcacactc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028387 390 - 149150640 tgggattacaggcgcccgtcaccacgcttggctaattttttgtatttttggtagagacggggtttcaccatgtcggccaggctggtctcgcactcctgacctcaaatgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagctaccacgcccggccTAAGTAACtcttttcgttcgtttgagacagggttttggtctgtcacccaagctgcgatcttagctcagtgcagccttgatctcccggctcaagcaatcctccaacctcagccttccaagcagctgggacaacaggcacacgccaccatgcctggctaatttttaattttgttgttgatagggagaaggtctggctctgttgcccaagctggtctcacactc
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171707828 390 - 171882078 tgggattacaggcgcccgtcaccacgcttggctaattttttgtatttttggtagagacggggtttcaccatgtcggccaggctggtctcgcactcctgacctcaaatgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagctaccacgcccggccTAAGTAACtcttttcgttcgtttgagacagggttttggtctgtcacccaagctgcgatcttagctcagtgcagccttgatctcccggctcaagcaatcctccaacctcagccttccaagcagctgggacaacaggcacacgccaccatgcctggctaatttttaattttgttgttgatagggagaaggtctggctctgttgcccaagctggtctcacactc
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182456 390 +  25972781 tgggattacaggcgcccgtcaccacacttggctaattttttatatttttggtagagacggggtttcaccatgtcggccaggctggtctcgcactcctgacctcaaatgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagctaccacgcccggccTAAGTAACtcttttcgttcgtttgagacagggttttggtctgtcacccaaggtgcgatcttagctcagtgcagccttaatctcccggctcaagcaatcctccaacctcagccttccaagcagctgggacaacaggcacacgccaccatgcctggctaatttttaattttgttgttgatagggagaaggtctggctctgttgcccaagctggtctcacactc
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      130688 389 -   1025902 tgggatgacaggtgcccgtcaccacgcttggctaa-tttttgtgtttttgatagagacggggtttcaccatgtcggccaggctggcctcgcactcctgacctcaaatgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagctaccacgtgcggccTAAGTAACtcttttcgttcgtttgagacagggttttggtctgtcacccaagctgcgatcttagctcagtgcagccttgatctcccggctcaagcaatcctccaacctcagcgttccaagcagctgggacaacaggcactcgccaccttgcctggctaatttttaattttgttgttgatagggagaaggtctgactctgttgcccaagctggtctcacactc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110307 390 -    811265 tgggattacaggcgcctgtcaccacgcttggctaattttttgtatttttggtagagacgggatttcaccacgttggccaggctggtctcgaactcctgacctcaaatgatccacgcgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggccTAAGTAACtcttttcgttcgtttgagacagggttttggtctgtcacccaagctgcgatcttagctcagagcagccttgatctcccggctcaagcaatcctccaacctcagccttccaagcagctgggacaacaggcacacgccaccatgcctggctaatttttaattttgttgttgatagggagagggtctggctctgttgcccaagctggtctcacactc
i chlSab2.chrUn_KE147541v1 T 4327 C 0
s manLeu1.NW_012108508v1       44104 390 -    350446 tggaattgcaggcgcccgtcaccacgcttcgctaattttttgtgtttttggtagagacggggttttgccatgttggccaggctggcctcgcactcctgacctcaaatgatccacacgcctcgacctcccaaagtgctgggattacaggcgtgagctaccacgcgcggccTAAGTAACtcttttcgttcgtttgagacagcgttttggtctgtcacccaagctgcgatcttagctcagtgcagccttgatctcccggctcaagcaatcctccaacctcagccttccaagcagctgggacaacaggcgcacgccaccttgcctggctaatttttaattttgttattgataaggagaaggtctggctctgttgcccaagctggtctcacactc
i manLeu1.NW_012108508v1   C 0 C 0
e cebCap1.NW_016107987v1      220542 627 -    735872 I
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282   2 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=378339.000000
s hg38.chrX_KI270880v1_alt     72085 121 +    284869 ctggcctcaagcaatcttcctgcctttgcctctgtctctgcctcccaaagcgttgggattacaggcgtgagccaccgcacccgATTTAAATCACTCATAAACGATAGTTTTGTGTTGTGTA
s panTro5.chrX                206646 121 + 155549662 ctggcctcaagcaatcttcctgcctttgcctctgtctctgcctcccaaagcgttgggattacaggcgtgagccaccgcacccggTTTAAATCACTCATCAACGATAGTTTTGTGTTGTGTA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141226 121 +    417917 ctggcctcaagcaatcttcctgcctttgcctctgtctctgcctcccaaagcgttgggattacaggcgtgagccaccgcacccggTTTAAATCACTCATAAACGATAGTTTTGTGTTGTGTA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028777 113 - 149150640 ctggcctcaagcccttctcctgcctttgcttctgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAGTCACTCATCAACGACGGTTTTGTGTTGCGTC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171708218 113 - 171882078 ctggcctcaagccctcctcctgcctttgcctccgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAGTCACTCATCAACGACGGTTTTGTGTTGCGTC
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182846 113 +  25972781 ctggcctcaagccctcctcctgcctttgcctctgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAGTCACTCATCAACGACGGTTTTGTGTTGCGTC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131077 113 -   1025902 ctggcctcaagccctcctcctgcctttgcctctgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAGTCACTCATCAACGACGGTTTTGTGTTGCGTC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110697 113 -    811265 ctggcctcaagccctcctcctgcctttgcctctgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAATCAGTCATCAACGATGGTTTTGTGTTGCGTC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44494 113 -    350446 ctggcctcaacccatcctcctgcctttgcctctgtcttggcctcc--------tgggattccaggcgtgagccaccgcgcccggcGTCAGTCACTCATCAACGATGGTTTTGTGTTGCGTC
i manLeu1.NW_012108508v1   C 0 C 0
s cebCap1.NW_016107987v1      221169 113 -    735872 ctggtctcaagccatcttcctgcctctggtttttcctctgcctcctaaagttctgggatttcaggcgtgagccaccgcgcccggcTTAAAGAACTCACAAAC--------TGTGCTGTGTA
i cebCap1.NW_016107987v1   I 627 C 0
e saiBol1.JH378345            151037 3531 +    465904 I
e otoGar3.GL873584            114282   2 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=132974.000000
s hg38.chrX_KI270880v1_alt     72206 40 +    284869 CATAATGATTTGAATTTCAGTTTGTGTTTCGTGATTGGAT
s panTro5.chrX                206767 40 + 155549662 CATAATGATTTGAATTTCAGTTTGTGTTTCGTGATTGGAT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141347 40 +    417917 CGTAATGATTTGAATTTCAGTCTGTGTTTCGTGATTGGAT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028890 40 - 149150640 CGTCCTGATTTCAATCTCAGGTTGTGTTCCATGACCGGAC
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171708331 40 - 171882078 CGTCCTGATTTCAATCTCAGGTTGTGTTCCATGACCGGAC
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182959 40 +  25972781 CGTCCTGATTTCAATTTCAGGTTGTGTTCCATGACCGGAC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131190 40 -   1025902 CGTCCTGATTTCAATTTCAGGTCGTGTTCCATGACTGGAC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110810 40 -    811265 CGTCCTGATTTCAATTTCAGGTTGTGTGCCATGACTGGAC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44607 40 -    350446 CGTCCCGATTTCAATTTCAGGTTGTGTTCCATGACTGGAC
i manLeu1.NW_012108508v1   C 0 C 0
s cebCap1.NW_016107987v1      221282 40 -    735872 CATAACGATTTTAAACTCAGTTCGTGTTTCAGGATTGCAT
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584            114284 40 +  11138919 CAAGATGGTTGCAAACTCGGTTTGTGTTTCATAACTGGAG
i otoGar3.GL873584         I 2 C 0
e saiBol1.JH378345            151037 3531 +    465904 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=47748.000000
s hg38.chrX_KI270880v1_alt     72246 11 +    284869 ATAAAAATCCG--
s panTro5.chrX                206807 11 + 155549662 ATAAAAATCCG--
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141387 11 +    417917 ATAAAAATCCG--
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028930 11 - 149150640 ATAAAAATCCG--
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171708371 11 - 171882078 ATAAAAATCCG--
i macFas5.chr7             C 0 C 0
s macNem1.NW_012017243v1      182999 11 +  25972781 ATAAAAATCCG--
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131230 11 -   1025902 ATAAAAATCCG--
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110850 11 -    811265 ATAAAAATCCG--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44647 11 -    350446 ATAAAAATCCG--
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154568 10 +    465904 ataaaaaCCA---
i saiBol1.JH378345         I 3531 C 0
s cebCap1.NW_016107987v1      221322 11 -    735872 ATAAAAATCCG--
i cebCap1.NW_016107987v1   C 0 I 323
s otoGar3.GL873584            114324 13 +  11138919 ATAAAAAATCCTT
i otoGar3.GL873584         C 0 C 0
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=141439.000000
s hg38.chrX_KI270880v1_alt     72257 34 +    284869 AGTGTACTTGGTCAGAAGAGCGCCATCACGCAGG
s panTro5.chrX                206818 34 + 155549662 AGTGTACTTGGTCAGAAGAGCGCCATCACGCAGG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141398 34 +    417917 AGTGTACTTGGTCAGAAGAGCGCCATCACGCAGG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028941 34 - 149150640 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i rheMac8.chrX             C 0 C 0
s macFas5.chr7             171708382 34 - 171882078 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i macFas5.chr7             C 0 N 0
s macNem1.NW_012017243v1      183010 34 +  25972781 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131241 34 -   1025902 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110861 34 -    811265 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44658 34 -    350446 AGCGCTCTTGGTCAGAAGAGCCGCATCACGCAGG
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154578 34 +    465904 AATAGACTTGGTCACGAGAGCGCAGTCACGCGGC
i saiBol1.JH378345         C 0 C 0
s cebCap1.NW_016107987v1      221656 34 -    735872 AGTGTACTTGGCCACGTGAGCGCTGTCACGCAGG
i cebCap1.NW_016107987v1   I 323 C 0
s otoGar3.GL873584            114337 34 +  11138919 AATACACCTGGTTGTAAGGGCACTGTCAACCAGG
i otoGar3.GL873584         C 0 I 1
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=74397.000000
s hg38.chrX_KI270880v1_alt     72291 20 +    284869 AATTCTGTGAAGTTATTTTT
s panTro5.chrX                206852 20 + 155549662 AATTCTGTGAAGTTATTTTT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141432 20 +    417917 AATTCTGTGAAATTATTTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028975 20 - 149150640 AATTCTGTGAACTTATTTTG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      183044 20 +  25972781 AATTCTGTGAACTTATTTTG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131275 20 -   1025902 AATTCTGTGAACTTATTTTG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110895 20 -    811265 AATTCTGTGAACTTATTTTG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44692 20 -    350446 AATTCTGTGAACTTATTTTG
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154612 20 +    465904 GAGTCTGTGAAGCTGTTGTT
i saiBol1.JH378345         C 0 I 1
s cebCap1.NW_016107987v1      221690 20 -    735872 AATTCTGTGAAGTCATTTTT
i cebCap1.NW_016107987v1   C 0 I 278
s otoGar3.GL873584            114372 20 +  11138919 AAATCTATGATGTTATTTTT
i otoGar3.GL873584         I 1 C 0
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=671059.000000
s hg38.chrX_KI270880v1_alt     72311 290 +    284869 CCTAATTGGGAAGCAACCGTTTGTGTGTGTGT------------GC----GATGCTGTGATTTCTGGAGGGAAGTGAATATATTAATACAGTTCTCTGTTT-GAGTATGTATCGGACACAGACGTCTTTTCAAGGAACAAAC-GTGCTTTTCATTCTGGGTGTTTCGATGAGCTGCGAGTCACTGTTGGAAGCATCACTGCAGTTTTGAGGGGAAAGGGTTTCCTTTGAATGCCTGCACAAGAGGCCTTTCTCTGCCAGGTTACTGGGGCACAGTGTAGTGAGGCCCAGGGCCAACAGGACAGAAATC
s panTro5.chrX                206872 290 + 155549662 CCTAATTGGGAAGCAAACGTTTGTGTGTGTGT------------GC----GATGCTGTGATTTCTGGAGGGAAGTGAATATATTAATACAATTCTCTGTTT-GAGTGTGTATCGGACACAGACGTCTTTTCAAGGAACAAAC-GTGCTTTTCATTCTGGGTGTTTCGATGAGCTGCGAGTCACTCTTGGAAGCATCACTGCGGTTTTGAGGGGAAAGGGTTTCCTTTGAATGCCTGCACAAGAGGCCTTTCTCTGCCAGGTTACTGGGGCACAGTGTGGTGAGGCCCAGGGCCAACAGGACAGAAATC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141452 290 +    417917 CCTAATTGGGAAGCAAACGTTTGTGTGTGTGT------------GC----GATGCTGTGATTTCTGGAGGGAAGTGAATGTATTAATACAATTCTCTGTTT-GAGTGTGTATCGGACACAGACGTCTTTTCAAGGAACAAAC-GTGCTTTTCATTCTGGGTGTTTCGATGAGCTGCGAGTCACTGTTGGAAGCATCACTGCGGTTTTCAGGGGAAAGGGTTTCCTTTGAATACCTGCACAAGAGGTCTTTCTCTGCCAGGTTACTGGGGCACAGTGCGGTGAGGCCCAGGGCCAGCAGGACAGAAGTC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149028995 281 - 149150640 ACTAACCGGGAAGCACACgtgtgtgtgtgtgtgtgtgtgtgtgCGC--GAGACGCCGTGATTTCTACGGGGAAGTGGATATATTAATACAGATCTGTGTTTAGAGTGTGTCTCCTACACAGGCATCTTTTCAAAGAACAAAC-GTGGTGTTCACT---------------------GAGTCCCTGTGTGAGGCATCACTGCGGTTGTGAGGGGAAAGGA-TTCCTTTCAACGCTAGCACAAGAGAGCTTTATCTGCCAGGGTCCTGGGGCGCAGCG--GCGAGGCCCAGGGCCAACAGGACAGAAATA
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      183064 279 +  25972781 ACTAACCGGGAAGCACACgtgtgtgtgtgtgtgtgtgtgtgtgCGC----GACGCCGTGATTTCTACGGGGAAGTGGATATGTTAATACAGATCTCTGTTTAGAGTGTGTCTCATACACAGGCATCTTTTCAAAGAACAAAC-GTGGTGTTCATT---------------------GAGTCCCCGTGTGAGGCATCACTGCGGTTGTGAGGGGAAAGGG-TTCCTTTCAATGCTAGCACAAGAGAGCTTTATCTGCCAGGGTCCTGGGGCGCAGTG--GCGAGGCCCAGGGCCAACAGGACAGAAATA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131295 283 -   1025902 ACGAACCGGGAAGCACACgtgtgtgtgtgtgtgtgtgtgtgtgtgCGTGCGACGCCGTGATTTCTACGGGGCAGTGGATATATTAATACAGATCTCTGTTTAGAGTGTGTCTCCTACACAGGCGTCTTTTCAAAGAACAAAC-GTGGTGTTCATT---------------------GAGTCCCTGTGTGAGGCATCACTGCGGTTGTGAGGCGAAAGGG-TTCCTTTCAACGCTAGCACAAGAGGGCTTTATCTGCCAGGGTCCTGGGGCGCAGTG--GCGAGGCCCAGGGCCAACGGGACAGAAATA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    110915 277 -    811265 ACTAACCGGGAAGCACACgtgtgtgtgtgtgtgtgt--gCGCGCGC----GACCCCGTGATTTCTGCGGGGCAGTGGATATATTAATACAGATCTCTGTTTAGAGTGTGTCTCCTACACAGGCGTCTTTTCAAAGAACAAAC-GTGGTGTTCATT---------------------GAGTCCCTGTGTGAGGCATCACTGCGGTTGTGAGGGGAAAGGG-TTCCTTTCAACGCTAGCACAAGAGGGCTTTATCTGCCAGGGTCCTGGGGCGCAGTG--GTGAGGCCCAGGGCCAACGGGACAGAAATA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44712 275 -    350446 ACGAACCGGGAAGCACACgtgtgtgtgtgtgtgtgt----gtgCGC----GACGCCGTGATTTCTACGGGGCAGTGGATATATTAATACAGATCTCTGTTTAGAGTGTGTCTCCTACACAGGCGTCTTTTCAAAGAACAAAC-GTGGTGTTCATT---------------------GAGTCCCTGTGTGAGGCATCACTGCGGTTGTGAGGGGAAAGGG-TTCCTTTCAACGCTAGCACAAGAGGGCTTTATCTGCCAGGGTCCTGGGGCGCAGTG--GCGAGGCCCAGGGCCAACGGGACAGAAATA
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154633 278 +    465904 GCTCGCCGGGAAGCCAGCGTTGATGTGC----------------GC----CGGGCTGTGATTTGTGGGGGCAGCCGAGTCCATGAATGGGGACCTCT-------GGGTGCAGGACACACTCCCGTCTTTTGCAAGAACAGAC-CTGCTTTTCATCCCGGCTGCTTCCACGAGCTGTAAGTCCCTGTGTGATGCATCTGTGTGGCATTGCAGGGAAACGG-CTCCTTGGAACGTCCGTAGAAGGCGGCTCTATGTGCCAGGGTACCGGGGCGCAGGG-GGCGAGGCTCCGGGCCAGGAGGACAGACAGG
i saiBol1.JH378345         I 1 C 0
s otoGar3.GL873584            114392 267 +  11138919 ATTAATTGGGAAGCAAATGTTTGTGTGT----------------TC----CATGCCATCATTTCTGGCAGGAAGTAGATACAC--ACTCAGATGTCT-------GAGATTACCATGTACAGACATGTCTTCAAAGAATCAACAGTGCTTTTCACTCTGGGTCTTTCAGTTTGCTGTAAGTCACTGTTGGGCTCATCAGCATGGTTTTGTGG-GAAAGGG-CTCCTTTGAGCGCT-GCACAAGAGGGCTTTATCTGC-------TCGGGGCACAGCG--GTGGGGCTCAACGCCAAGGGGACAGAAATA
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      221710 278 -    735872 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=125709.000000
s hg38.chrX_KI270880v1_alt     72601 31 +    284869 AACTCA-GGGCAG-AAACAGAATGCGCCTTCAG
s panTro5.chrX                207162 31 + 155549662 AACTCA-GGGCAG-AAACAGAATGCGCCTTCAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141742 32 +    417917 AACTCA-GGGCAGAAAACAGAATGCGCCTTCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149029276 31 - 149150640 AACTCA-GGGCAG-AAACAGAATGTTTCTTCAG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      183343 31 +  25972781 AACTCA-GGGCAG-AAACAGAATGTTTCTTCAG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131578 31 -   1025902 AACTCA-GGGCAG-AAACAGAATGTGCCTTCAG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    111192 31 -    811265 AACTCA-GGGCAG-AAACAGAATGTTTCTTCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       44987 31 -    350446 AACTCA-GGGCAG-AAACAGAATGTGCCTTCAG
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154911 30 +    465904 AACTCA-GGGCAG-AAACAGAACGCGCCTTCA-
i saiBol1.JH378345         C 0 C 0
s cebCap1.NW_016107987v1      221988 31 -    735872 AACTCA-GGGCAG-AAACAGAACGCGCCTTCAG
i cebCap1.NW_016107987v1   I 278 I 1058
s otoGar3.GL873584            114659 32 +  11138919 AACTCAGGGGCAC-ACAAGGAATGTGCCTTCGG
i otoGar3.GL873584         C 0 C 0
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=645118.000000
s hg38.chrX_KI270880v1_alt     72632 257 +    284869 TCTGCGCTGGGGCCCGGGGGCCCACTCCGTGCAGGCTTTGCTCTGGGAGAACAAAGAGGTGCTGTCGGG-CCCCCAAGGCTGGCAGGGCCTGAGGTGTTGCAGAGTTTG--CTGGGATGTGGCCAGCTGCAATTATCCAAGCTGCTCC---ACAGC--CGGAT---GGA--CGCCCTGCCCATTCGGGTCTGTCCGTCTTGCA-GGGGTGGTGGGTGGCCACCAGAATTGTCCTGGGGAGAGAAAGGTGAGGGCAggccgggagattgcag
s panTro5.chrX                207193 257 + 155549662 TCTGCGCTGGGGCCCGGGGGCCCACTCCGTGCAGGCTTTGCTCTGGGAGAACAAAGAGGTGCTGTCGGG-CCCCCAAGGCTGGCAGGGCCTGAGGTGTTGCAGAGTTTG--CTGGGATGTGGCCAGCTGCAATTATCCAAGCTGCTCC---ACAGC--CGGAT---GGA--CGCCCTTCCCGTTCGGGTCTGTCCGTCTTGCA-GGGGTGGTGGGTGGCCACCAGAATTGTCCTGGGGAGAGAAAGGTGAGGGCAggccgggagattgcag
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      141774 255 +    417917 TCTGCGCTGGGGCCCGGGGGCCCACTCCGTGCAGGCTTTGCTCTGGGAGAACAAAGAGGTGCTGTCAGG-CCCCCAAGGCTGGCAGGGCCTGAGGTGTTGC--AGTTTG--CTGGGATGTGGCCAGCTGCAATTATCCAAGCTGCTCC---ACAGC--CGGAT---GGA--CGCCCTGCCCGTTCGGGTCTGTCCGTCTTGCA-GGGGTGGTGGGTGGCCACCAGAATTGTCCTGGGGAGAGAAAGGTGAGGGCAggccgggagattgcag
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149029307 240 - 149150640 TGTGCGCTGGGGC-----------CTCGGCGCAGGCTCCGTTGTGGGAGAACAAAGAGGTGCTGTCGGG-CCCCC-AGGCTGGCAGGGCGTGAGGTG-TGCAGAGCTTG--CTGGCATGTGGCCAGCTCCAATTATCCAAGCTGCCCT---ACAGC--AGGAT---GGA--CGCCCTGCCCGTTTGGGTCTGTCCGTCTTGCA-GGGCTGCTGGGTGGCCAGCGGAATCATCCTGGGGAGACAACGGTGACGGCAggccggg----tgcaa
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      183374 240 +  25972781 TGTGCGCTGGGGC-----------CTCGGCGCAGGCTCTGCTGTGGGAGAACAAAGAGGTGCTGTCGGG-CCCCC-AGGCTGGCAGGGCGTGAGGTG-TGCAGAGCTTG--CTGGCATGTGGCCAGCTCCAATTATCCAAGCTGCCCT---ACAGC--AGGAT---GGA--CGCCCTGCCCGTTTGGGTCTGTCCGTCTTGCA-GGGCTGCTGGGTGGCCAGCGGAATCATCCTGGGGAGACAACGGTGAGGGCAggccggg----tgcaa
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      131609 240 -   1025902 TCTGTGCTGGGGC-----------CTCGGCGCAGGCTCTGCTCCGGGAGAACAGAGAGGTGCTGTCGGG-CCCCC-AGGCTGGCAGGGCGTGAGGTG-TGCAGAGCTTG--CTGGGATGTGGCCAGCTCCAATTATCCAAGCTGCCCT---ACAGC--AGGAT---GGA--CGCCCTGCCCGTTCGGGTCTGTCCGTCTTGCA-GGGCTGCTGGGTGGCCAGCGGAATCGTCCTGGGGAGACAACGGTGAGGGCAggccggg----tgtaa
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    111223 240 -    811265 TCTGGGCTGGGGC-----------CTCGGCGCAGGCTCTGCTGTGGGAGAACAAAGAGGTGCTGTCGGG-CCCCC-AGGCGGGCAGGGCATGAGGTG-TGCAGAGCTTG--CTGGGATGTGGCCAGCTCCAATTATCCAAGCTGCCCT---ACAGC--AGGAT---GGA--CGCCCTGCCCGTTCGGGTCTGTCCGTCTTGCA-GGGCCGCTGGGTGGCCAGCGGAGTCGTCCTGGGGAGAGAACGGTGAGGGCAggccggg----tgcaa
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1       45018 241 -    350446 TCTGTGCTGGGGC-----------CTCAGTGCAGGCTCTGCTGTGGGAGAACAGAGAGGTGCTGTCGGGCCCCCC-AGGCTAGCAGGGCCTGAGGTG-TGCAGAGCTTG--CTGGGATGTGGCCAGCTCCAATTATCCAAGCTGCCCT---ACAGC--AGGAT---GGA--CGCCCTGCCCGTTCGGGTCTGTCCGTCTTGCA-GGGCTGCTGGGTGGCCAGCGGAATCGTCCTGGGGAGAGAACGGTGAGGGCAggccggg----tgcaa
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345            154941 221 +    465904 ---------------------------------GGGCCTGCCCTGGGAGAACAGAGAGGCACTTCTGGG-GCGTG-AGGCTGGCAGGGCCTGGGGTG-GGCGCAGCTTG--CGGGGATGGTGCCAGCCACACTCATCCTGACGGGCGT---GTAGC--AGGCT---GCACCCCCCCTGCCCGTTTGAGTCTGCCCATCTTGTAGGGGGTGGTGGGTCGCTGCTGGAACTTTCCAGGCGAGAAAAAGGACAAGTCAGGCCGGG----CGCAG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584            114691 245 +  11138919 CCTGTGCTGGG-------------CCTGG----GGCCCTGC-CTGAGAGAACAAAGAGCTGCTGTGGGA-CCCCA-AGCCTTGCCGGGCTTAGGACA--GCTGAGCTCAGCCTCAACAGGGGCCAGATTCTGCTGACCACTCTGATCCTGGCTAGCTGAGGATCGGGGA--AGCTTGGTCCGCTGGGTCCCATCCATCTTGTA-GGAGTGGTGGGTGGTCACCAGAGCTGTCCTTGGGAAGGGAAGG-GAGGTCAAGGTGGGCAGCAGCAG
i otoGar3.GL873584         C 0 I 1
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=93666.000000
s hg38.chrX_KI270880v1_alt     72889 39 +    284869 tggctcatgcctgtcatcccagcactttgggaggccgag
s panTro5.chrX                207450 39 + 155549662 tgactcatgcctgtcatcccagcactttgggaggccgag
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      142029 39 +    417917 tggctcgtgcctgtcatcccagcactttgggaggccgag
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149029547 39 - 149150640 tggctcacgcctgtcatcccagcactttgggaggccgag
i rheMac8.chrX             C 0 I 259
s macNem1.NW_012017243v1      183614 39 +  25972781 tggctcacgcctgtcatcccagcactttgggaggccgag
i macNem1.NW_012017243v1   C 0 I 259
s cerAty1.NW_012001098v1      131849 39 -   1025902 tggctcacgcctgtcatcccagcgctttgggaggccgag
i cerAty1.NW_012001098v1   C 0 I 257
s chlSab2.chrUn_KE147541v1    111463 39 -    811265 tggctcacgcctgtcatcccagcactttgggaggccgag
i chlSab2.chrUn_KE147541v1 C 0 I 257
s manLeu1.NW_012108508v1       45259 39 -    350446 tggctcacacctgtcatcccagcactttgggaggccgag
i manLeu1.NW_012108508v1   C 0 I 257
s saiBol1.JH378345            155162  7 +    465904 TGGCTCG--------------------------------
i saiBol1.JH378345         C 0 C 0
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e otoGar3.GL873584            114936  1 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=65548.000000
s hg38.chrX_KI270880v1_alt     72928 200 +    284869 acggtggatcacctgaggtcaggggttcaagaccagcctggccaacatggtgaaacccccgtctctac-aaaaatacaaa-aattagccaggcacggtggctcacacctgtcatcccagcactttgggaggccgaggt-ggtggatcacctgaggtcaggagttcgagac-------------------------------cagcctggccaacatggtgaaaccccgtctcta
s panTro5.chrX                207489 200 + 155549662 gcggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-ccctgtctctac-aaaaatacaaa-aattagccagtcatggtggctcacacctgtcatcccagcactttgggaggccgaggcaggaggattgtttaagcccaggaggtcaagac-------------------------------cagcctgggcaacatggcgagaccccatctcta
i panTro5.chrX             C 0 I 189
s gorGor5.CYUI01015925v1      142068 198 +    417917 acggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-ccccatctctac-aaaaatacaaa-aattagccaggcacggtggctcacacctgtcatcccagcactttggagggccgaggc-ggtggatcacctgaggtcaggagttcaagac-------------------------------cagcctggccaacatggtgaaa-cccgtctcta
i gorGor5.CYUI01015925v1   C 0 C 0
s saiBol1.JH378345            155169 220 +    465904 -------------tgaggtcaagagacggagaccagcctggccaacgtgctgaag-ccccgtggctgctaaaaatacaaacaatcagccaggcgtgctggtgggtgactgtcatcccagctcctcaggaggctggggcaggagaatcccttgaacccgggaggcggaggtggcggtgagccagggtctcaccattgcactgcagcccaggtaatagagagaggctccgtcttag
i saiBol1.JH378345         C 0 C 0
e manLeu1.NW_012108508v1       45298 257 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e otoGar3.GL873584            114936   1 +  11138919 I
e chlSab2.chrUn_KE147541v1    111502 257 -    811265 I
e cerAty1.NW_012001098v1      131888 257 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149029586 259 - 149150640 I
e macNem1.NW_012017243v1      183653 259 +  25972781 I

a score=49407.000000
s hg38.chrX_KI270880v1_alt     73128 398 +    284869 ------caaaaatacaaaaaTTAgccaggcatggtggctcacacctgtcatcccagcactttgggaggccgaggcaggaggattgtttaagcccaggaggtcaagacc-------------------------------agccttggcaacatggcgag-ccccatctctaga------gaatattt---aaaaattagctgagcatcctggcgtgtgcctgtggtcccagctactcgggaggctgaggtaggaggatcgtttgagcctgggaggttgaggcttcagtgagccgagatctcaccaccgctctccagccgaggcaggaatgaaagactctgtccctaaaaGCATTAAATTTTAAAAAGCAGCCAGATATCgtggctcacacctgttatcccagcactttgggaagctgaggtgggaggatcacctgaggtcaggag
s gorGor5.CYUI01015925v1      142266 393 +    417917 ------caaaaatacaaaaattagccaggcatggtggctcacacctgtcatcccagcactttgggaggccgaggcaggagga---tttgagcccaggaggtcaagacc-------------------------------agcctgggcaacatggcgagaccccatctctaga------gaatattt----aaaattagctgggcatcctggcgtgcgcctgtggtcccagcta-ttgggaggctgaggtgggagggtcgtttgagcctgggaggttgaggcttcagtgagccgagatctcaccaccgcactccagcctaggcaggaatgaaagactctgtccctaaaaGCATTAAATTTTAAAAAGCAGCCAGATATCTtggctcacacctgttatcccagcactttgggaagctgaggcggt-ggatcacctcaggtcaggag
i gorGor5.CYUI01015925v1   C 0 C 0
s saiBol1.JH378345            155389 408 +    465904 aaaaaaaaaaagaaagaaaattagtgaggcattctggcgtgcacctgaggtcacagcgacgtgggaggctgaggggggaggatcactggagcccgggaggttgaggcttcagcgagcgaagatgtcacccctgcacggaagcccggggagcagggaaagaccttgtccctaaaaGCATTAAATTTTTTTTAAAAAACAGCCAGATCTggtggt-cacatctgtggtcccagcactttgggaggccaaggcgggcgggtctccttaggttaggtgttcaaga-------------------------------ccggcctggccaacagggtgaaaccctgtctttatga-----aaaatacaaaaatgagccaggcgtggtggtggctgcctgtggtcccagctactggggaggctgaggcaggaggatcgcttgaacccgggag
i saiBol1.JH378345         C 0 I 3401
e manLeu1.NW_012108508v1       45298 257 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e otoGar3.GL873584            114936   1 +  11138919 I
e panTro5.chrX                207689 189 + 155549662 I
e chlSab2.chrUn_KE147541v1    111502 257 -    811265 I
e cerAty1.NW_012001098v1      131888 257 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149029586 259 - 149150640 I
e macNem1.NW_012017243v1      183653 259 +  25972781 I

a score=4925.000000
s hg38.chrX_KI270880v1_alt     73526 57 +    284869 ttcgagaccagcctgaccaacatgctgaaaccccgtctctacaaaaatacaaaaatt
s gorGor5.CYUI01015925v1      142659 57 +    417917 ttcgagaccagcctggccaacatggtgaaaccccgtctctacaaaaatataaaaatt
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1       45298 257 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            114936  1 +  11138919 I
e panTro5.chrX                207689 189 + 155549662 I
e chlSab2.chrUn_KE147541v1    111502 257 -    811265 I
e cerAty1.NW_012001098v1      131888 257 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149029586 259 - 149150640 I
e macNem1.NW_012017243v1      183653 259 +  25972781 I

a score=573.000000
s hg38.chrX_KI270880v1_alt     73583 2 +    284869 ag
s panTro5.chrX                207878 2 + 155549662 Ag
i panTro5.chrX             I 189 C 0
s gorGor5.CYUI01015925v1      142716 2 +    417917 ag
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1       45298 257 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            114936 1 +  11138919 I
e chlSab2.chrUn_KE147541v1    111502 257 -    811265 I
e cerAty1.NW_012001098v1      131888 257 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149029586 259 - 149150640 I
e macNem1.NW_012017243v1      183653 259 +  25972781 I

a score=693467.000000
s hg38.chrX_KI270880v1_alt     73585 334 +    284869 ccagacgtggtggctcacacctgtcatcccagcactttgggaagctgag--gcaggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctttacaaaaatagaaaaattagct-gggcatgatggcgggtgcctgtaatcccagctacttgggagactgaggcagaagaatcacttgaacccaggagacagacgttgcagtgagccgagatcacagcattgcactccagcctggacagcagagcgagactccctctcgaaaaaataaa----aataaaaataaaataaaaaGCGAGAATGGGGAGGGAAGAGTAGC
s panTro5.chrX                207880 338 + 155549662 ccagacgtagtggctcacacctgtaatcccagcactttgggaagctgag--gcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctttataaaaatacaaaaattagct-gggcatgatggcgggtgcctgtaatcccagctacttgggagactgaggcaggagaatcacttgaacccaggagacagacgttgcagtgagccgagatcacagcattgcactccagcctggacagcagagcgagactccctctcgaaaaaataaataaaaataaaaataaaaTAAAAAGCGAGAATGGGGAGGGAAGAGTAGC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      142718 339 +    417917 ccagacgtggtggctcacacctgtcatcccagcactttgggaagctgag--gcaggcggatcacctgaggtcgggagttcgagaccagcctggccaacatggtgaaaccccgtctttacaaaaatacaaaaattagctggggcatgatggcgggtgcctgtaatcccagctacttgggagactgaggcaggagaatcgcttgaacccaggagacagacgttgcagtgagctgagatcacagcattgcactccagcctgggcagcagagcgtgactccctctcgaaaaaataaataaaaataaaaataaaaTAAAAAGCGAGAATGGGGAGGGAAGAGTAGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149029845 326 - 149150640 ccagacgtggtggctcacacctgtcatcccagcactttgggaggccgaggtgccgggggaacgcctgaggtcaggagttcgaggccagcctgaccaacagggtgaaaccccgtatctac--------aaaaattactt-gggcatgatggcgggtgctcgtcatcctagctacttgggaggctgaggcgggagaatcgcttgaacccgggaggcggaggttgcggtgagccggcatcgtgccactgcagtccagcctgggcgacagagcgagactccatctgaaaaaaata------agtaaaaataaaataaaaaGCGAGAACGGGGAGGGAAGAGTAGA
i rheMac8.chrX             I 259 C 0
s macNem1.NW_012017243v1      183912 326 +  25972781 ccagacgtggtggctcacacctgtcatcccagcactttgggaggccgaggtgccgggggaacgcctgaggtcaggagttcgaggccagcctgaccaacagggtgaaaccccgtatctac--------aaaaattactt-gggcatgatggcgggtgctcgtcatcctagctacttgggaggctgaggcgggagaatcgcttgaacccgggaggcggaggttgcggtgagccggcatcgtgccactgcagtccagcctgggcgacagagcgagactccatctcaaaaaaata------agtaaaaataaaataaaaaGCGAGAACGGGGAGGGAAGAGTAGA
i macNem1.NW_012017243v1   I 259 C 0
s cerAty1.NW_012001098v1      132145 320 -   1025902 ccagacgtggtggctcacacctgtcatcccagcactttgg------gaggtgcggggggaacgcctgaggtcaggagttcgaggccagcctgaccaatagggtgaaaccccgtatctac--------aaaaattactt-gggcacaatggcaggtgcccgtcatcctagctagttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcggtgagccggcatcgtgccaccgcagtccagcctgggcgacagagcgagactgcgtctcaaaaaaata------agtaaaaataaaataaaaaGCGAGAACGGGGAGGGAAGAGTAGA
i cerAty1.NW_012001098v1   I 257 C 0
s chlSab2.chrUn_KE147541v1    111759 326 -    811265 ccagacgtggtggctcacacctgtcatcccagcactttgggaggccgaggtgcgggggaaacgcctgaggtcaggagtttgaggccagcctgaccaagagggtgaaaccccctatctac--------aaaaattaggt-gggcaggatggctggtgcccctcatcctagctacttgagaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcggcgagccggcatcgtgccactgcacggcagcctgggcagcagagtgagactccatctcaaaaaaata------agtaaaaataaaataaaaaGCGAGAACCGGGAGGGAAGAGTAGA
i chlSab2.chrUn_KE147541v1 I 257 C 0
s manLeu1.NW_012108508v1       45555 318 -    350446 ccagacgtggtggctcacacctgtcatcccagcactttgg------gaggtgcggggggaacgcctgaggtcaggagttcgaggccagcctgaccaacagggtgaaaccccgtatctac--------aaaaattactt-gggcacgatggcgggtgcccgtcatcctagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcggtgagccgacattgtgc--ccgcagtccagcctgggcaacagagcgagactgcatctcaaacaaata------agtaaaaataaaataaaaaGCGAGAACGGGGAGGGAAGAGTAGA
i manLeu1.NW_012108508v1   I 257 C 0
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            114936   1 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=312271.000000
s hg38.chrX_KI270880v1_alt     73919 179 +    284869 GAGGAAGATTCCGGAAGACTCTGCTCCTCTGTGGGATGTAGGTCCAGGAACAAAGAGCTGGGTCAGCGCTTCCCAGGGAGGTGAGGAAGGAGGGAGCCACAACGGTTGTAGAGGGAGAGAAGCTCCTTCCTTCATCCACCTGAGCCCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
s panTro5.chrX                208218 179 + 155549662 GAGGAAGATTCCGGAAGACTCTGCTCCTCTGTGGGATGTAGGTCCAGGAACAAAGAGCTGGGTCAGCGCTTCCCAGGGAGGTGAGGAAGGAGGGAGCCACAACGGTTGTAGAGGGAGAGAAGCTCCTTCCTTCATCCACCTGAGCCCAGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143057 218 +    417917 GAGGAAGATTCCGGAAGACTCTGCTCCTCTGTAGGACGTAGGTCCAGGAACAAAGAGCTGGGTCAGAGCTCCCTGGGGAGGAGAGGAAGGAGGGAGCCACAACGGTTGTAGAGGGAGAGAAGCTCCTTCCTTCATCCACCTGAGCCTGGGTCTC-------------------------CTGTGTGGCCACAGCCTCTGCAGCCCAAAGGGCCCAACTTTgtgaggttcacacacctgcagcc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030171 127 - 149150640 GAGGAAGATCCCGG----------------------------------------------------AGCTTCCTTGGGGGGTGAGGAAGGTGGGAGCCACGACGGTTGTAGAGGGAGAGCAGCTCCTCCCTTCACCCACCTGAGCCCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
i rheMac8.chrX             C 0 I 21
s macNem1.NW_012017243v1      184238 127 +  25972781 GAGGAAGATCCCGG----------------------------------------------------AGCTTCCTTGGGGGGTGAGGAAGGTGGGAGCCACGACGGTTGTAGAGGGAGAGCAGCTCCTCCCTTCACCCACCTGAGCCCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
i macNem1.NW_012017243v1   C 0 I 21
s cerAty1.NW_012001098v1      132465 127 -   1025902 GAGGAAGATCCTGG----------------------------------------------------AGCTTCCTTGGGGGGTGAGGAAGGTGGGAGCCATGACGGTTGTAGAGGGAGAGCAGCTCCTCCCTTCACCCACCTGAGCTCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
i cerAty1.NW_012001098v1   C 0 I 21
s chlSab2.chrUn_KE147541v1    112085 175 -    811265 GAGGAAGATCCCGGAAGACTCTGATCCTCTGTGGGATGTAGACCCAGGAACAA--AGCTGGGTC--AGCTTCCTTGGGAGGTGAGGAAGGTGGGAGCCATGACGGTTGTAGAGGGAGAGCAGCTCCTCCCTTCACCTACCTGAACCCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CTGCAGCC
i chlSab2.chrUn_KE147541v1 C 0 I 115
s manLeu1.NW_012108508v1       45873 127 -    350446 GAGGAAGATCCCGG----------------------------------------------------AGCTTCCTTGGGGGGTGAGGAAGGTGGGAGCCATGACGGTTGTAGAGGGAGAGCAGCTCCTCCCTTCACCCACCTGAGCTCGGGTCTC-------------------------CTGTGTGGCCACAGCCT---------------------------------------CGGCAGCC
i manLeu1.NW_012108508v1   C 0 I 21
s otoGar3.GL873584            114937 187 +  11138919 GAGGAAGATTCCAG-AGACTCTGCAT-------GGGTGTAACCTCAAGGGTGCTGCCC--------ATCTCCCCTGAGAGGTGGGAGAGGAGAGAGCCA-AGTGGTCGGGGAGGTTAAGAGTCACCTTCCTTCACTCACCTGAGCCCAGGTCCCTGGGAGGTAGCCTGCAGGCCCCTCACAGTGTGGTTCCTACAC---------------------------------------CTGCTGTT
i otoGar3.GL873584         I 1 C 0
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=208131.000000
s hg38.chrX_KI270880v1_alt     74098 125 +    284869 TCTGCCCCACCTGCAGCTGCTCAGAAATGCAAACTCACCCACTGTATGACATGCTCTGGATCTCAGTCGGCCTTCGCC------CCGCAGACCTGGGTG------------------------------------------------------------------------------GTTGATCG-AACACTAAAGCTCCAGACCTGGAG
s panTro5.chrX                208397 125 + 155549662 TCTGCCCCACCTGCAGCTGCTCAGAAATGCAAACTCACCCACTGTATGACATGCTCTGGATCTCAGTCGGCCTTCGCA------CCGCAGACCTGGGTG------------------------------------------------------------------------------GTTGATTG-AACGCTAAAGCTCCAGACCTGGAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143275 126 +    417917 tctgccccacctgcagctgctcagaaatgcaaactcACCCACTGTGTGACATGCTCTGGATCTCAGTCGGCCTTCGCA------CCGCAGACCTGGGTG------------------------------------------------------------------------------GTTGATCGAAACGCTAAAGCTCCAGACCTGGAG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030319 125 - 149150640 GTTCACACACCTGCAGCTGCTCAGAAGTGCAAACTCACCCCCTGCATGACGTGCTCTGGATATCAGTCGGCCTTCGCA------CCGCAGCCCTGGGTG------------------------------------------------------------------------------GTTGATCG-AACGCTAAAGCTCCAGACCTGGAG
i rheMac8.chrX             I 21 C 0
s macNem1.NW_012017243v1      184386 125 +  25972781 GTTCACACACCTGCAGCTGCTCAGAAGTGCAAACTCACCCCCTGCATGACGTGCTCTGGATATCAGTCGGCCTTCGCA------CCGCAGCCCTGGGTG------------------------------------------------------------------------------GTTGATCG-AATGCTAAAGCTCCAGATCTGGAG
i macNem1.NW_012017243v1   I 21 C 0
s cerAty1.NW_012001098v1      132613 125 -   1025902 GTTCACACACCTGCAGCTGCTCAGAAGTGCAAACTCACCCCCTGCATGACGTGCTCTGGATATCAGTCGGCCTTCGCA------CTGTAGCCCTGGGTA------------------------------------------------------------------------------GTTGATCG-AACACTAAAGCTCCAGACCTGGAG
i cerAty1.NW_012001098v1   I 21 C 0
s manLeu1.NW_012108508v1       46021 125 -    350446 GTTCACACACCTGCAGCTGCCCAGAAGTGCAAACTCACCCCCTGCATGACGTGCTCTGGATATCAGTCGGCCTTCGCA------CCGTAGCCCTGGGTG------------------------------------------------------------------------------GTTGATCG-AACACTAAAGCTCCAAACCTGGAG
i manLeu1.NW_012108508v1   I 21 I 7080
s otoGar3.GL873584            115124 195 +  11138919 CCAGCCCCACTTGGGG--GCTCAGAAACGC---CTCACCT---------CACGCCAGGACTTGCAGTGGGCCTTGGGAAGTTGGCTGCACACTTGGGTgacactggccccatataccagaggtggagggttcaaacccagccccagccaaaaactgcaacaaCAACAGCAACAAAAAGTTGTCTG-CACACTTCAGCTGGACACACAGAG
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1    112260 115 -    811265 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=64296.000000
s hg38.chrX_KI270880v1_alt     74223 51 +    284869 ATGCCTCAGAGGAAGCACCTGGCAA--GTAGGATCTCCCTGGTCCTGCGCCGA
s panTro5.chrX                208522 51 + 155549662 ATGCCTCAGAGGAAGCACCTGGCAA--GTAGAATCTCCCTGGTCCTGCGCCGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143401 51 +    417917 ATACCTCAGAGGAAGCACCTGGCAA--GTAGGATCTCCCTGGTCCTGCGCTGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030444 53 - 149150640 ATGCCCCAGAGGAAGTGCCTGGCAGGTGTAGGATCTCCCTGGTCCTGGGCTGG
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      184511 51 +  25972781 ATGCCCCAGAGGAAGCGCCTGGCAG--GTAGGATCTCCCTGGTCCTGGGCTGG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      132738 51 -   1025902 ATGCCCCAGAGGAAGCGCCTGGCAG--GTAGGATCTCCCTGGTCCTGGGCTGG
i cerAty1.NW_012001098v1   C 0 C 0
s otoGar3.GL873584            115319 35 +  11138919 AT------GAAAAGACACCTGAGAG--G-AGGA---------TCCTGGGCTGA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1    112260 115 -    811265 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=154991.000000
s hg38.chrX_KI270880v1_alt     74274 80 +    284869 CCCAAAGCTCCCAGCTAGGTGCGT-GCAGTG--AGAGGTCAAAGAGGGATCAAGTTTATATCTGCCGCTTGCATTCCGCACGA
s panTro5.chrX                208573 80 + 155549662 CCCAAAGCTCCCAGCTAGGTGCGT-GCAGTG--AGAGGTCAAAGAGGGATCAAGTTTATATCTGCCGCTTGCATTCTGCACGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143452 80 +    417917 CCCAAAGCTCCCAGCTAGGTGCGT-GCAGTG--AGAGGTCAAAGAGGGATCAAGTTTATATCTGCCGCTTGCATTCCGCACGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030497 80 - 149150640 CCCAAAGCTCCCAGCTAGGCGTAT-GCAGTG--AGAGGTCAAACAGGGATCAAGTTTATATCTGCTGCTTGCATTCCGCATGA
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      184562 80 +  25972781 CCCAAAGCTCCCAGCTAGGCGTAT-GCAGTG--AGAGGTCAAACAGGGATCAAGTTTATATCTGCTGCTTGCATTCCGCATGA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      132789 81 -   1025902 CCCAAAGCTCCCAGCTAGGCATATCCCATTG--AGACGTCAAAGAGGGATCAAGTTTATATCTGCTGCTTGCGTTCCGCATGA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112375 80 -    811265 CCCAAAGCTCCCAGCTAGGCGTAT-GCAGTG--AGAGCTCAAACAGGGATCAAGTTTCTATCTGCTGCTTGCATTCCGCATGA
i chlSab2.chrUn_KE147541v1 I 115 C 0
s otoGar3.GL873584            115354 80 +  11138919 CTCTGACCTGTAAGCCACTTGCTG-CCACTGCCAGAGGTCAA--AGTGACCGAGTTTATATCTGCCACTTACATTCAGCCTGA
i otoGar3.GL873584         C 0 I 4616
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=11844.000000
s hg38.chrX_KI270880v1_alt     74354 6 +    284869 TGACTT
s panTro5.chrX                208653 6 + 155549662 TGACTT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143532 6 +    417917 TGACTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030577 6 - 149150640 TGACTT
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      184642 6 +  25972781 TGACTT
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      132870 6 -   1025902 TGACTT
i cerAty1.NW_012001098v1   C 0 I 53
s chlSab2.chrUn_KE147541v1    112455 6 -    811265 TGACTT
i chlSab2.chrUn_KE147541v1 C 0 I 58
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=3640.000000
s hg38.chrX_KI270880v1_alt     74360 4 +    284869 Aaaa
s panTro5.chrX                208659 4 + 155549662 Aaaa
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143538 4 +    417917 Aaaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030583 4 - 149150640 aaaa
i rheMac8.chrX             C 0 I 53
s macNem1.NW_012017243v1      184648 4 +  25972781 aaaa
i macNem1.NW_012017243v1   C 0 I 53
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e chlSab2.chrUn_KE147541v1    112461 58 -    811265 I
e cerAty1.NW_012001098v1      132876 53 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=12486.000000
s hg38.chrX_KI270880v1_alt     74364 53 +    284869 caaacaaacaaaacaaacaaacaaaaaa--aaacaaaaaa----cCCAGCCGAGCACAG
s panTro5.chrX                208663 58 + 155549662 caaacaaacaaaacaaacaaacaaaaaa-caaacaaaAAAAAACCCCAgccgagcacag
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143542 57 +    417917 caaacaaacaaaacaaacaaacaaaaaaacaaacaaaaaa--acCCCAGCCGAGCACAG
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e chlSab2.chrUn_KE147541v1    112461 58 -    811265 I
e cerAty1.NW_012001098v1      132876 53 -   1025902 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I
e rheMac8.chrX             149030587 53 - 149150640 I
e macNem1.NW_012017243v1      184652 53 +  25972781 I

a score=1365.000000
s hg38.chrX_KI270880v1_alt     74417 1 +    284869 t
s panTro5.chrX                208721 1 + 155549662 t
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143599 1 +    417917 t
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030640 1 - 149150640 t
i rheMac8.chrX             I 53 C 0
s macNem1.NW_012017243v1      184705 1 +  25972781 t
i macNem1.NW_012017243v1   I 53 C 0
s cerAty1.NW_012001098v1      132929 1 -   1025902 t
i cerAty1.NW_012001098v1   I 53 C 0
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e chlSab2.chrUn_KE147541v1    112461 58 -    811265 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=342328.000000
s hg38.chrX_KI270880v1_alt     74418 210 +    284869 g-----------tcatcccagcactttgggaggccgacaggggtggatcac--gaggtcaagagatcgaaaccagcctggccaacgtggtgaaaccccgtctctactaaaaatacaaatattagctgggcgtggtggcgggcacctgtaaccctagcaactcgggaggctgaggcaggagaatcacttgaacccgggaggcggagcttgcagtgaacagagat
s panTro5.chrX                208722 221 + 155549662 ggctcacatctgtcatcccagcactttgggaggccgacacgggtggatcac--gaggtcaagagatcgaaaccagcctggccaacgtggtgaaaccccgtctctactaaaaatacaaatattagctgggcgtggtggcgggcacctgtaaccccagcaactcgggaggctgaggcaggagaatcgcttgaacccgggaggtggagattgcagtgaacagagat
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143600 209 +    417917 g-----------tcatcccagcactttgggaggccgacacgggtggatcac--gaggtcaagagatcgaaaccagcctggccaacgtggtgaaaccccgtctctact-aaaatacaaatattagctgggcgtggtggtgggcacctgtaaccccagcaactcgggaggctgaggcaggagaatcacttgaacccgggaggtggagattgcagtgaacagagat
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030641 210 - 149150640 -----------gtcatcccagcactttgggaggccgaggcgggcggatcac--gaggtctggagagcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaatgtcagccaggcgtggtagcagatgccggtcatcccagctactcgggaggctgaggcaggagaatcccttgaacccgggagactgagattgcagtgagccgagat
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1      184706 210 +  25972781 -----------gtcatcccagcactttgggaggccgaggcgggcggatcac--gaggtctggagagcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaatgttagccaggcgtggtggcaggtgcctgtcatcccagctccttgggaggctgaggcaggagaatcgcttgaacccgggagactgagattgcagtgagccgagat
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1      132930 210 -   1025902 -----------gtcatcccagcactttgggaggccgaggcgggcggatcac--gaggtctagagatcgagaccagcctggcgaacatggtgaaaccccgtctctactaaaaatagaaatgtcagccaggcgtggtggcaggtgcctgtcatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggagactgagattgcagtgagccgagat
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1    112519 212 -    811265 -----------gtcatcccagcactttgggaggccgaggcgggcggatcactttagggcaggagttcgagaccagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaacgagccggacgtggtggcgggtgcctgtcatcccagctcctcgggaggctgaggcaggggaatcgcttgaacccgggaggcggaggttgcagtgagccgagat
i chlSab2.chrUn_KE147541v1 I 58 I 6569
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=56911.000000
s hg38.chrX_KI270880v1_alt     74628 49 +    284869 catgcccctgtactccagcctg--------gcgacagagcgagactctgtctcaaaa
s panTro5.chrX                208943 49 + 155549662 cgtgcccctgcactccagcctg--------gcgacagagcgagactctgtctcaaaa
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1      143809 57 +    417917 cgcgcccctgcactccagcctggcgacagagcgacagagcgagactctgtctcaaaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             149030851 50 - 149150640 catgccattgcagtccagcctgg-------gcgacagagcgggactctgtctcaaaa
i rheMac8.chrX             C 0 N 0
s macNem1.NW_012017243v1      184916 50 +  25972781 cgcgccattgcagtccagcctgg-------gcgacagagcgggactctgtctcaaaa
i macNem1.NW_012017243v1   C 0 I 812
s cerAty1.NW_012001098v1      133140 50 -   1025902 cgtgccattgcagtccagcctgg-------gcgacagagcgggactctgtctcaaaa
i cerAty1.NW_012001098v1   C 0 I 1847
e manLeu1.NW_012108508v1       46146 7080 -    350446 I
e cebCap1.NW_016107987v1      222019 1058 -    735872 I
e saiBol1.JH378345            155797 3401 +    465904 I
e otoGar3.GL873584            115434 4616 +  11138919 I
e chlSab2.chrUn_KE147541v1    112731 6569 -    811265 I
e colAng1.NW_012115411v1      197437 3029 +   1230721 I

a score=70196.000000
s hg38.chrX_KI270880v1_alt  74677 256 +    284869 tgaataaataaataggaaaGTAGTGTGGGTCTGCATTCTGCAGGTTTTGGAAACACATTTCCGAGTGCATATTTCAGGTGAGGAGAGGTGGGGACTCCAGGCAGCGTGCACAGTTT-AGACTCTAACCGTGggccgggagtggtggctcactcctataatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaagccccatctgtactaaaaatcc
s panTro5.chrX             208992 256 + 155549662 tgaataaacaaataggaaaGTAGTGTGGGTCTGCATTCTGCAGGTTTTGGAAACACATTTCTGAGTGCATATTTCAGGTGAGGAGAGGTGGGGACTCCAGGCAGCGTGCACAGTTT-AGACCCTAACTGTGggccaggcgtggtggctcactcctataatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaagccccatctgtactaaaaatcc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   143866 257 +    417917 tgaataaataaataggaaaGTAGTGTGGGTCTGCATTCTGCAGCTTTTGGAAACACATTTCCGAGTGCATATTTCAGGTGAGGAGAGGTGGGGACTCCAGGCAGCGTGCACAGTTTAAGACTCTAACTGTGggccgggcgtggtggctcactcctataatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaagccccatctgtactaaaaatcc
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    46146 7080 -    350446 I
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         115434 4616 +  11138919 I
e chlSab2.chrUn_KE147541v1 112731 6569 -    811265 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=74707.000000
s hg38.chrX_KI270880v1_alt  74933 156 +    284869 aaaaattagccagatgtggtggcgtgcacctgtcatcccagctactggggaggctgaggcaggagaatcgcttgaacccggtggaggcggaggttgcagtgagccgagatcgcgctgctgtactccagcctgggtgacagagcgagactccctccc
s panTro5.chrX             209248 156 + 155549662 aaaaattagccagatgtggtggcatgcacctgtcatcccagctactcgggaagctgaggcaggagaatcgcttgaacccggtggaggcggaggttgcagtgagccgagatcgcgctgctgtactccagcttgggtgacagagcgagactccctcca
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144123 156 +    417917 aaaaattagccagatgtggtggcgtttacctgtcatcccagctactcgggaagctgaggcaggagaatcgcttgaacccggtggaggcggaggttgcagtgagccgagatcgcgctgctgtactccagcctgggtgacagagcgagactccctcca
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119300 156 -    811265 aaaaattagccggatgtgggggggggcacctgtaatcccgggtactcggggggctgaggcaggagaatggcttgaacccggtgggggcggaggttgcagtgagctcagaaggtgccactgctctccggcctgggcgacagagcgagacgccctctg
i chlSab2.chrUn_KE147541v1 I 6569 C 0
e manLeu1.NW_012108508v1    46146 7080 -    350446 I
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         115434 4616 +  11138919 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=20447.000000
s hg38.chrX_KI270880v1_alt  75089 29 +    284869 aaaaaaagaaa------CCACCGTAACTGTGGCAG
s panTro5.chrX             209404 35 + 155549662 aaaaaaaaaaaaaaaaaCCACCGTAACTGTGGCAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144279 33 +    417917 aaaaaaaaaaa--aaaaCCACCGTAACTGTGGCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119456 29 -    811265 aaaaaaaaaaa------agaCCGTAACTGTGGCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1    53226 29 -    350446 AAAAAAAAAAA------ACACCGTAACTGTGTCAG
i manLeu1.NW_012108508v1   I 7080 C 0
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         115434 4616 +  11138919 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=36279.000000
s hg38.chrX_KI270880v1_alt  75118 40 +    284869 TAAGAGGCCAGGAACTCTCACAGATACCTCGTCCAAAACC
s panTro5.chrX             209439 40 + 155549662 GAAGAGGCCAGGAACTCTCACAGATACCTCCTCCAAAACC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144312 40 +    417917 GAAGAGGCCAGGAACTCTCACAGATACCTCCTCCAAAACC
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119485 40 -    811265 GAGGAGGCCAGGCACTCTGACGGATACCTCCTCCCAAACC
i chlSab2.chrUn_KE147541v1 C 0 I 103
s manLeu1.NW_012108508v1    53255 40 -    350446 GAAGAGGCCAGGCACTCTGACGGATACCTCCTCCCAAACC
i manLeu1.NW_012108508v1   C 0 I 114
s otoGar3.GL873584         120050 38 +  11138919 TAAGGTGCCATGAGCTCTCTC--ATGCCTTGGCCAGAATC
i otoGar3.GL873584         I 4616 C 0
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=7692.000000
s hg38.chrX_KI270880v1_alt  75158 32 +    284869 GGCAAAGGAGAGGATGGAA---------------------------CATTTGCT--GTAGA
s panTro5.chrX             209479 32 + 155549662 GGCAAAGGAGAGGATGGAA---------------------------CATTTGCT--GTAGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144352 32 +    417917 GGCAAAGGAGAGGATGGAA---------------------------CATTTGCT--GTAGA
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         120088 61 +  11138919 CCCAAAGGACAGGCTTGCAGGTGTGTGCTCCCTCACAGAGGGACCTCATTAGCTCCCTGGA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    53295 114 -    350446 I
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 119525 103 -    811265 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=4178.000000
s hg38.chrX_KI270880v1_alt  75190 10 +    284869 ------------------GGTTTTCCTG
s panTro5.chrX             209511 10 + 155549662 ------------------GGTTTTCCTG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144384 10 +    417917 ------------------GGTTTTCCTG
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119628 10 -    811265 ------------------GGTCTTCCTA
i chlSab2.chrUn_KE147541v1 I 103 C 0
s otoGar3.GL873584         120149 28 +  11138919 GTGCGGACTCATGGCCCGTGCTTTACTG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    53295 114 -    350446 I
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=1610.000000
s hg38.chrX_KI270880v1_alt  75200 3 +    284869 -CCT
s panTro5.chrX             209521 3 + 155549662 -CCT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144394 3 +    417917 -CCT
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119638 3 -    811265 -CCT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1    53409 3 -    350446 -CCT
i manLeu1.NW_012108508v1   I 114 C 0
s otoGar3.GL873584         120177 3 +  11138919 TCC-
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   184966 812 +  25972781 I

a score=163838.000000
s hg38.chrX_KI270880v1_alt  75203 123 +    284869 CTTCATAACTCCTTGAGGCTGTGTCCTCATCCATCTTCCAGAAACCAAAAACCCTTCACACATCGCCCC--TTTTGTCCCGAGCGGCGCCCGCTGCCACCTGCTTGGCAAAATAAAACGTAAGTG
s panTro5.chrX             209524 123 + 155549662 CTTCATAACTCCTTGAGGCTGTGTCCTCATCCATCTTCCAGAAACCAAAAACCCTTCACACATCGCCCC--TTTTGTCCCGAGCAGCGCCCGCTGCCACCTGCTTGGCAAAATAAAACGTAAGTG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144397 122 +    417917 CTTCATGACTCCTTGAGGCTGTGTCCTCATCCATCTTCCAGAAACCAAAAACCCTTCACACATCGCCCC---TTTGTCCCGAGCGGCGCCCGCTGCCACCTGCTTGGCAAAATAAAACGTAAGTG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   185778 125 +  25972781 CTTCGTAACTACTTCAGGCCGTGTCCTCATCCATCTTCCAGAAACCAGGAACCCTTCACACGAGCCCCCGCTTTTGTCCCGAGCGGCCTCCGCCGCCACTTGCTTGGCAAAATAAAAGGTAAGTG
i macNem1.NW_012017243v1   I 812 C 0
s chlSab2.chrUn_KE147541v1 119641 125 -    811265 CTTCGTAACTGCTTCAGGCCGTGTCCTCATCCGTCTTCCAGAAGCCAAGAACCCTTCACACGAACCCCCGCTTTTGTCCCGAGCGGCCTCCGCCGCCACTTGCTTGGCAAAATAAAAGGTAAGTG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1    53412 125 -    350446 CTTCGTAACTGCTTCAGGCCGTGTCCTCATCCATCTTCCAGATACCAACAGCCCTTCACACAATCCCCCGCTTTTGTCCCGAGCGGCCTCCGCCGCCACTTGCTTGGCAAACTAAAAGGTAAGTG
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         120180 121 +  11138919 CCTTATAACTCACTGTGACTGCCTCCTGCGCCAT-TGTTAGAAATTCAGGGCCCTTGACAAATACCCCC---TTGGTCCCCAATGCTCCTTGCCGACACTTGTTTGTAAAAATAAAAGGTAAGTT
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1   222019 1058 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=102019.000000
s hg38.chrX_KI270880v1_alt  75326 60 +    284869 GAAAAATGCTCCCTTTTCCATTTTCCTCTCTAATTGAATTCTCTCCTGACCTCTCGGTT-C
s panTro5.chrX             209647 54 + 155549662 GAAAAATGCTCCCTTTTCCAT------CTCTAATTGAATTCTCTCCTGACCTCTCGGTT-C
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144519 60 +    417917 GAAAAATGCTCCCTTTTCCATTTTCATCTCTAATTGAATTCTCTCCTGACCTCTCGGTT-C
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   185903 59 +  25972781 GGAAAA-GGCCCGATTTCCGTTTTCATGTCTAATTGAATTCTCTGCTGACCTGTCGGTC-C
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 119766 59 -    811265 GAAAAA-GCCCCGCTTTCCATTTTCATCTCTAATTGAATTCTCTGCTGACCTGTCGGTT-C
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1    53537 60 -    350446 GGAAAA-GGCCCGATTTCCGTTTTCATCTCTGATTGAATTCTCTCCTGACCCGTCGGTTCC
i manLeu1.NW_012108508v1   C 0 C 0
s cebCap1.NW_016107987v1   223077 60 -    735872 GAAAAATGGCCCCCTTTCCATTTTCATCTCTGATTGAATTCTCTCCTGACCTCCTCGCC-C
i cebCap1.NW_016107987v1   I 1058 C 0
s otoGar3.GL873584         120301 59 +  11138919 GAAAAA-TGCCCCTTTTCCATTTTCATCTCTAATTGAATTCTCCTCTGGCCCCTTGGTT-C
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   133190 1847 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=79956.000000
s hg38.chrX_KI270880v1_alt  75386 34 +    284869 CCCACGGCT-GTGTTTCAGGTTTTGATGATAAGGA-
s panTro5.chrX             209701 34 + 155549662 CCCACGGCT-GTGTTTCAGGTTTTGATGATAAGGA-
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144579 34 +    417917 CCCACGGCT-GTGTTTCAGGTTTTGATGATAAGGA-
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   185962 34 +  25972781 CCTACGGCC-GTGTGTCAGGTTTTGACGAGGAGGA-
i macNem1.NW_012017243v1   C 0 I 1
s cerAty1.NW_012001098v1   135037 35 -   1025902 CCCACGGCTAGTGTTTCAGGTTTTGATGATGAGGA-
i cerAty1.NW_012001098v1   I 1847 I 2796
s chlSab2.chrUn_KE147541v1 119825 34 -    811265 CCCACGGCT-GTGTGTCGGGTTCTGATGAGGAGGA-
i chlSab2.chrUn_KE147541v1 C 0 I 1
s manLeu1.NW_012108508v1    53597 34 -    350446 CCCACGGCT-GTGTGTCAGGTTTTGATGATGAGGA-
i manLeu1.NW_012108508v1   C 0 I 1
s cebCap1.NW_016107987v1   223137 34 -    735872 CCCACGGCC-GCGTCTTACCTTCTGATGATCAGCG-
i cebCap1.NW_016107987v1   C 0 C 0
s otoGar3.GL873584         120360 35 +  11138919 CCCATGGCT-GTGTCTCAGGTTTTGATGATAGAGGA
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=304321.000000
s hg38.chrX_KI270880v1_alt  75420 163 +    284869 AAAGAACTCTGTATTTGGATAATACGATT------------TTCAGC--AACCTTCAACTCAATTTCCTC-TCCCCGGAGACAGTGTATCTTATAGGATAGAATG-AAATCCCTTATTCATAGGG-AAAAAGTTCCAATTTAATCTGAATATTCAGCGTGCCGCCGTGGCCGGGGT----GATG
s panTro5.chrX             209735 163 + 155549662 AAAGAACTCTGTATTTGGATAATACAATT------------TTCAGC--AACCTTCAACTCAATTTCCTG-TCCCTGGAGACAGTGTATCTTATAGGATAGAATG-AAATCCCTTATTCATAGGG-AAAAAGTTCCAATTTAATCTGAATATTCAGCATGCCGCTGTGGCCGGGGT----GATG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144613 164 +    417917 AAAGAACTCTGTATTTGGATAATACAATT------------TTCAGC--AACCTTCAACTCAATTTCCTC-TCCCCGGAGACAGTGTATCTTGTAGGATAGAATGAAAATCCCTTATTCATAGGG-AAAAAGTTCCAATTTAATCTGAATATTCAGCGTGCCGCCGTGGCCGGGGT----GATG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   185997 165 +  25972781 AAGAAACTCTGTGTTTTGATAATACGAGC------------TTCAGCAAAACCTTCAACTCAATTTCCTC-TCCCCGGAGACGGCGTATCTTCTAGGGTTGAATG-AAATCCCTTATTCATAGGG-AACACGTTCCAATTTAGCCGGAATATTCAGCGTGCCGCCGCGGCCGCGGT----GATG
i macNem1.NW_012017243v1   I 1 C 0
s chlSab2.chrUn_KE147541v1 119860 170 -    811265 AAGACAGTCTGTGTTTGGAGAATACGATG------------TTCAGCAAAACCTTCAACGCAATTTCCTC-TCCCCAGAGACGGTGTATCTTGTAGGATTGAATG-AAATCCCTTATTCGTAGGGAAAAACGTTCCAATTTCATCTGAATATTCAGCGTGCCGCCGCGGCCGCGGTGATGGATG
i chlSab2.chrUn_KE147541v1 I 1 C 0
s manLeu1.NW_012108508v1    53632 165 -    350446 AAGAAACTCTGTGTTTGGATAATTCGATT------------TCCAGCAAAACCTTCAACTCAATTTCCTC-TCCCCGGAGACGGTGTATCTTCTAGGATTGAATG-AAATCCCTTATTCATAGGG-AACACGTTCCAGTTTGATCTGAATATTCAGCGTGCCGCCGCGGCCGCGGT----GATG
i manLeu1.NW_012108508v1   I 1 C 0
s cebCap1.NW_016107987v1   223171 164 -    735872 ACAGCGCTGTACGTTTGGAAAATACAATT------------TCCACC--AACCTTCAGCTCAATTTCTCCGTCCCCGAAGACGCCGTATATCACGGGACGGAATG-AAATGCCTTATTCATAGGG-AAAAAGTCCCCATTTAATCTGAATATTCAGCGGGCCGTGCTGGCCGGGGT----GATG
i cebCap1.NW_016107987v1   C 0 I 117
s otoGar3.GL873584         120395 176 +  11138919 AAAGAATTTTGTATTTGGATAATACAATTTTCTTACTTGCCTTCAGC--AACCTTCAACTCAATTTCCTG-TCCCCAGAGACAGTGTATATTATAGAATAGAATC-AAATTCCTTATTCATAGGGGGAAAAGCTCCAATTTAATCTGAATATTCAGCGTTTCACGCTGGCCAGGGT----GACG
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=44404.000000
s hg38.chrX_KI270880v1_alt  75583 41 +    284869 GATGGCGTATGGAAATATCACAGTTCAAGCAATCAGATG--TC
s panTro5.chrX             209898 41 + 155549662 GATGGCGTATGGAAATATCACGGTTCAAGCAATCAGATG--TC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144777 41 +    417917 GATGGCGTATGGAAATATCCCGGTTCAAGCAATCAGATG--TC
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186162 39 +  25972781 GATGGCGTGTGCAAATACCACGGCTCCAGCCGTCAGACG----
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120030 41 -    811265 GATGGCGTGTGGAAATACCACGGTTCCAGCCATCAGACGTC--
i chlSab2.chrUn_KE147541v1 C 0 I 110
s manLeu1.NW_012108508v1    53797 39 -    350446 GATGGCGTGTGGAAATACCACGGCTCCAGCCATCAGACG----
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         120571 41 +  11138919 GATGTCACACAGAAGCGCTGTGGTTCAGGTAATCAAGTG--TC
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1   223335 117 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=64271.000000
s hg38.chrX_KI270880v1_alt  75624 80 +    284869 AGAATGCACTCTGCTACTGGAAGAAATAATGACGCCTATCCAATTTTCT-ATAAGGCGCAGAAATGCACGTTGCATCGTGA
s panTro5.chrX             209939 80 + 155549662 GGAATGCACTCTGCTACTGGAAGAAATAATGACGCCTATCCAATATTCT-ATAAGGCGCAGAAATGCACGTTGCATCGTGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144818 79 +    417917 -GAATGCACTCTGCTACTGGAAGAAATAATGACACCTATCCAATATTCT-ATAAGGCGCAGAAATGCACGTTACATCGTGA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186201 71 +  25972781 ---------TCCGCTACTGGAAGAAATAATGAAGGCCATTCAGTATTCT-ATCAGGGGCCGAAATGTGCCTTGCGTGGCGA
i macNem1.NW_012017243v1   C 0 C 0
s manLeu1.NW_012108508v1    53836 71 -    350446 ---------TCCGCTACTGGAAGAAATAATGAAGCCCATTCAGTATTCT-ATCAGGGGCCGAAATGTGCCTGGCATGGCGA
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         120612 81 +  11138919 GGGAAGCACTCTGGTAAGGAGGGAAATAATGGAGTCGATTCCATAGTCTCATGAGGTGCAGAAATGCACATCATATAGCGA
i otoGar3.GL873584         C 0 C 0
e cebCap1.NW_016107987v1   223335 117 -    735872 I
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 120071 110 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=69537.000000
s hg38.chrX_KI270880v1_alt  75704 48 +    284869 GGACCCCGGCTTTCTCCTATTACCTTACTAATCACATCTCCAT--TTAAA
s panTro5.chrX             210019 48 + 155549662 GGACCCCGGCTTTCTCCTATTACCTTACTAATCACATCTCCAT--TTAAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144897 48 +    417917 GGACCCCGGCTTTCTCCTATTACCTTACTAATCACATCTCCAT--TTAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186272 48 +  25972781 GGGCCCCGGCCTTCTCTGATTACCTTACTCACCACATCTCCGT--TTAAA
i macNem1.NW_012017243v1   C 0 C 0
s manLeu1.NW_012108508v1    53907 48 -    350446 GGGCCCCGGCCTTCTCTGATTACCTTCCTCATCACATCTCCGT--TTAAA
i manLeu1.NW_012108508v1   C 0 C 0
s cebCap1.NW_016107987v1   223452 48 -    735872 GGACCCCGGCTGTCTCTTATTACCTGACTCATCACATCTCCAT--TTAAA
i cebCap1.NW_016107987v1   I 117 N 0
s otoGar3.GL873584         120693 46 +  11138919 ----GCTGGCTTTCTCTTATTGCCTTAGCAATAACATCTCCATTGTTAAA
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 120071 110 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=6800.000000
s hg38.chrX_KI270880v1_alt  75752 20 +    284869 CACAG--AACAGAAAAGGAAGC--------
s panTro5.chrX             210067 20 + 155549662 CACAG--AACAAAAAAGGAAGC--------
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144945 20 +    417917 CACAG--AACAAAAAAGGAAGC--------
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186320 20 +  25972781 AGGAG--AAAAAAAAAAAACGT--------
i macNem1.NW_012017243v1   C 0 I 3
s manLeu1.NW_012108508v1    53955 22 -    350446 AGGAGGAAAAAAAAAAAAACGT--------
i manLeu1.NW_012108508v1   C 0 I 3
s otoGar3.GL873584         120739 24 +  11138919 ------AAAAAAAAAAAGAAGGAAAGAAGG
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 120071 110 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=268294.000000
s hg38.chrX_KI270880v1_alt  75772 220 +    284869 GTGGTCACAAATTAAGAATTAATGGAAGTGAGACTCCG--CAATGGATTCGGGGCC----GAGGGCCAAAGGCGGCCGCCACGTGCCGCTATTTACATGAAGTCACAGAGATGACGGGGATGAGCGGGGTCCCCTTGTCAGAA---------GCTGCTGGGCCAGATGAACCTGACAAGTATCTCCTAAG---------------AAGGATTTAG----AAAAGGGGAAGATGAAATCTTTGGAGGTAATGGAG
s panTro5.chrX             210087 220 + 155549662 GTGGTCACAAATTAAGAATTAATAGAAGTGAGACTCTG--CAATGGATTCGGGGCC----GAGGGCCAAAGGCAGCCGCCACGTGCCGCTATTTACATGAAGTCACAGACATGACAGGGATGAGCGGGGTCCCCTTGTCAGAA---------GCTGCTGGGCCAGATGAACCTGACAAGTATCTCCTAAG---------------AAGCATTTAG----AAAAGGGGAAGATGAAATCTTTGGAGGTAATGGAG
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   144965 219 +    417917 GTGGTCACAAATTAAGAATTAATGGAAGTGAGACTCTG--CAATGGATTCGGGGCC----GAGGGCCAAAGGCGGCCGCCACGTGCCGCTATTTACATGAAGTCACAGAGATGACGGGGATGAGCGGGGTCCCCTTGTCAGAA---------GCTGCTGGGCCAGATGAACCTGACAAGTATCT-CTAAG---------------AAGGATTTAG----AAAAGGGGAAGATGAAATCTTTGGAGGTAATGGAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186343 220 +  25972781 GTGGTCACCAATGAAGAATTAATGGAAGCGCGACCGGG--CGACGGATGCGGGGCC----GAGGGCCAGAGGCGGCCGCCACGTGCCGCTGTTTACATGAAGTCGCGGAGATTCCAGGGACCGGTGAGGTCGCCTTGTCAGAA---------GCTGCTGGGCCGGGTGCACCTGACAACGATCGCCTAAG---------------ATGAATTTAG----AAAAGGGGAAGATTAAATCTTTGGAGGTGATGGAG
i macNem1.NW_012017243v1   I 3 C 0
s chlSab2.chrUn_KE147541v1 120181 224 -    811265 GTGGTCACCAATGAAGAATTAATGGAAGCGAGACCGGG--CGACGGATGCGGGGCCGAGGGAGGGCCAGAGGCGGCCGCCACGTGCCGCTGTTTACATGAAGTCGCAGAGATTCCAGGGACGAGTGACGTCGCCTTGTCAGAA---------GCTGCTGGGCCAGGGGAACCTGACAACTCTCTCCTAAG---------------ATGAATTTAG----AAAAGGGGAAGATTGAATCTGTGGAGGTGATGGAG
i chlSab2.chrUn_KE147541v1 I 110 C 0
s manLeu1.NW_012108508v1    53980 220 -    350446 GTGGTCACCAATGAAGAATTAATGGAAGCGAGACCGGG--CGACGGATGCGGGGCC----CAGGGCCAGAGGCGGCCGCCACGTGCCGCTGTTTACATGAAGTTGCCGAGATTCCAGGCACGAGTGAGGTCGCCTTGTCAGAA---------GCCCCTGGACCAGGTGAACCTGACAACTGTCGCCTAAG---------------ATGAATTTAG----AAAAGGGGAAGATTAAATCTTTGGCGGTGATGGAG
i manLeu1.NW_012108508v1   I 3 I 134
s otoGar3.GL873584         120763 240 +  11138919 ATGGTCAAAAATTAAGAATTAATGTAAATGAGAGTGTGAAAAATGGAATAGCTACC-CGGGAGAGGGAAAGACAG-----------CACCATTTACATGAATCAATGTGAGTTGCAGAGAACAG-GGAGCCTCCCTGTCAGAAATACAAGAGGCTGCAGGACCCCATG-GCAGGCTGTGCTTCTCCCGAGGACATGGGGAGGAAAAAGGACTTGGGGGTGAGGGGAGATGATGAATTCTCTGGAGGTGATGCAG
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=8878.000000
s hg38.chrX_KI270880v1_alt  75992 10 +    284869 -AATTAGAAGC
s panTro5.chrX             210307 10 + 155549662 -AATTAGAAGC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145184 10 +    417917 -AATTAGAAGC
i gorGor5.CYUI01015925v1   C 0 I 2
s macNem1.NW_012017243v1   186563 10 +  25972781 -GATCAGAAGC
i macNem1.NW_012017243v1   C 0 I 122
s chlSab2.chrUn_KE147541v1 120405 10 -    811265 -GATCAGAAGC
i chlSab2.chrUn_KE147541v1 C 0 I 187
s otoGar3.GL873584         121003 11 +  11138919 AATTGGGGAGC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54200 134 -    350446 I
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=16518.000000
s hg38.chrX_KI270880v1_alt  76002  73 +    284869 ATGTCATTACCTATAAATCCTGC------GGCCCTGCACA-----------------------CGCTGTTGACAG--------------------CCCGGAAGATGAGA--------CTGGCTGAGAGGA
s panTro5.chrX             210317  73 + 155549662 ATATCATTACCTATAAATCCTGC------GGCCCTGCACG-----------------------CGGTGTTGACAG--------------------CCCTGAAGATGAGA--------CTGGCTGAAAGGA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145196  73 +    417917 ATATCATTACCTGTAAATCCTGC------GGCCCTGCACG-----------------------CGGTGTTGACAG--------------------CCCAGAAGATGAGA--------CTGGCTGAAAGGA
i gorGor5.CYUI01015925v1   I 2 C 0
s otoGar3.GL873584         121014 130 +  11138919 CCACCATGGCACGTAAATTCTGTGGAGGAGGACCTCCACAGCCTAGAAGATTGTACTTCAGGCCGATGCCGACAGAATTTGAGGGCCATGCAGGACTCAGGTTGTAGGGCGTGTATCCTGGTTTAGAAGC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54200 134 -    350446 I
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 120415 187 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   186573 122 +  25972781 I

a score=47898.000000
s hg38.chrX_KI270880v1_alt  76075 74 +    284869 -----------AAAAGATTCTGAGCCTGGAACAAGCGGACCCAGATTCTAGGTGGCCAGGCTGTGTGGTTGC-TTTTATC--ATTCCG
s panTro5.chrX             210390 74 + 155549662 -----------AAAAGATTCTGAGCCTGGAACAAGCGGACCCAGATTCTAGGTGGCCAGGCTGTGTGGTTGC-TTTTATC--ATTCTA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145269 72 +    417917 -----------AAAAGAT--TGAGCCTGGAACAAGTGGACCCAGATTCTAGGTGGCCAGGCTGTGTGGTTGC-TTTTATC--ATTCTA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186695 61 +  25972781 -----------AAAAGATTGTGAGCCTGGGACGAGTGGACCCAGATTCTC----------------GGTGGCTTTTTATCATATTCTA
i macNem1.NW_012017243v1   I 122 C 0
s manLeu1.NW_012108508v1    54334 77 -    350446 -----------AAAAGATTGTGAGCCTGGGACGAGCGGACCCAGATTCTCGGTGGCCGGGCTCTGTGGTGGCTTTTTATTATATTCTA
i manLeu1.NW_012108508v1   I 134 C 0
s otoGar3.GL873584         121144 83 +  11138919 AGCTAGAAATGCAGAGAT-CTGAGCCTGGAGCAGGGAGCCCCAGGTCCCAGGGGCCAACGTTGGCATGTGCT-TATTATC---TTCAG
i otoGar3.GL873584         C 0 C 0
e saiBol1.JH378345         155797 3401 +    465904 I
e chlSab2.chrUn_KE147541v1 120415 187 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=37534.000000
s hg38.chrX_KI270880v1_alt  76149 40 +    284869 GGAGACTTTCGGGAGGAAATGTTTGCAAAGAGCACGCAGA
s panTro5.chrX             210464 14 + 155549662 GGAGACTTTCAGGA--------------------------
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145341 40 +    417917 GGAGACTTTCGGGAGGACATGTTTGCAAAGAGCACGCAGA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186756 40 +  25972781 GGAGACGTTTGGGAGGAAATGTTTGCAAAGGACACGCAGA
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120602 40 -    811265 GGAGATTTTCGGGAGGAAATGTTTGCAGAGGACACGCAGA
i chlSab2.chrUn_KE147541v1 I 187 C 0
s manLeu1.NW_012108508v1    54411 40 -    350446 GGAGACTTTTGGGAGGAAATGTTTGCAAAGGACTCGCAGA
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         121227 37 +  11138919 ---GGTGTTCAGGGGGGAATATCTGGAAAACACGTGCAAA
i otoGar3.GL873584         C 0 I 18
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=1422.000000
s hg38.chrX_KI270880v1_alt  76189 2 +    284869 TG
s gorGor5.CYUI01015925v1   145381 2 +    417917 TG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186796 2 +  25972781 CG
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120642 2 -    811265 TG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1    54451 2 -    350446 TG
i manLeu1.NW_012108508v1   C 0 T 3990
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e panTro5.chrX             210478 0 + 155549662 C
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=600.000000
s hg38.chrX_KI270880v1_alt  76191 1 +    284869 G
s gorGor5.CYUI01015925v1   145383 1 +    417917 G
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186798 1 +  25972781 G
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120644 1 -    811265 G
i chlSab2.chrUn_KE147541v1 C 0 I 102
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e panTro5.chrX             210478 0 + 155549662 C
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=1535.000000
s hg38.chrX_KI270880v1_alt  76192 12 +    284869 GGAAATGTTTGC-----
s panTro5.chrX             210478 12 + 155549662 GGAAATGTTTGC-----
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145384 12 +    417917 GGAAATGTTTCC-----
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186799 12 +  25972781 -----CATTTTCTTTTC
i macNem1.NW_012017243v1   C 0 I 25
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e chlSab2.chrUn_KE147541v1 120645 102 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=8241.000000
s hg38.chrX_KI270880v1_alt  76204 29 +    284869 AAAGAGCACGCAGATGGCAttttcttttc
s panTro5.chrX             210490 29 + 155549662 AAAGAGCACGCAGATGGCATTTtcttttc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145396 29 +    417917 AAAGAGCACGCAGATGGCATTTTCTTTTC
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e chlSab2.chrUn_KE147541v1 120645 102 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   186811 25 +  25972781 I

a score=18792.000000
s hg38.chrX_KI270880v1_alt  76233 55 +    284869 tctctatt----ttt---------ttttttttgagacgtagtttttgctcttgtcgcccaggttggag--------------------------------
s panTro5.chrX             210519 59 + 155549662 tctctctctctattt---------ttttttttgagatgtagtttttgctcttgtcgcccaggctggag--------------------------------
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145425 68 +    417917 TCtctctctctctttatttatttattttttttgagacgtcgtttttgctcttgtcgcccaggctggag--------------------------------
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186836 86 +  25972781 tctttctt----ttt---------ttttttttgagacgtagtttttgctc-tgtcgcccaggctggagtgtaatgatgcaatctcagctcaccgcaaacg
i macNem1.NW_012017243v1   I 25 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e chlSab2.chrUn_KE147541v1 120645 102 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=158151.000000
s hg38.chrX_KI270880v1_alt  76288 209 +    284869 ccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacgcccggctaccttttatatttttagtagagactgggttttgccgcgttggccaggctggtctcgaactcccgacctcaggagatctgcccgtctcggcctccgaaaagtgct-gggattacagatgtgagtcaccgc
s panTro5.chrX             210578 209 + 155549662 ccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacgcccggctaccttttatatttttagtagagactgggttttgccgtgttggccaggctggtctcgaactcctgacctcaggagatctgcccgtctcggcctccgaaaggtgct-gggattacagatgtgagtcaccgc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145493 208 +    417917 ccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacgcccggctaccttttatatttttagtagagactgggttttgccgtgttggccaggctggtctcgaactcctgacctcagg-gatctgccggtctcggcctccgaaaagagct-gggattacagatgtgagtcaccgc
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   186922 208 +  25972781 ccacctcccgggttcaagcgattctcttgcctcagcctcccgagtagctgggatgacaggcacctgccaccgcgcccggctaatttttgtatttttagtggagacggggtttcgccatgttggccaggctggtctcgaactgctgacctcaagggaactgtccgcctcggcctctcaaa-gtgct-gggatgacaggtgtgagccaccgc
i macNem1.NW_012017243v1   C 0 I 706
s chlSab2.chrUn_KE147541v1 120747 207 -    811265 ccgcctcccgggtttacgccattctcctgcctcagcctcccgagtacccgggatgacaggcacctgccaccacgcacggctcatttttatatttttaggagagacggggtttcaccgtgttgaccaggctggtctcgatctcctgacctca--tgatccacccgcctcggcctcccgaa-gtgctggggatgacaggcaggagctgccgc
i chlSab2.chrUn_KE147541v1 I 102 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264  18 +  11138919 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I

a score=8856.000000
s hg38.chrX_KI270880v1_alt  76497 16 +    284869 gcctggccAGCATTTT
s panTro5.chrX             210787 16 + 155549662 gcctggccAGCATTTT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145701 16 +    417917 gcctggccAGCATTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120954 16 -    811265 gcccggccAGCATTTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121264 18 +  11138919 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=67618.000000
s hg38.chrX_KI270880v1_alt  76513 174 +    284869 GTA--------TCA-CCCCTAACTGCATCTATTTTGGTGTTGTTCATGATAATAATAAATGTCA--TGCATATCTCTGATTGAACTTGGCCCGTGCTTGAGCTCATTAGAAACAGGTTTTCCTATGTGTCATCTCTTATTTTTCTTGGTAATACTTGGAGCTGAGATT------------TCTTTTTCTCTCTCTTT
s panTro5.chrX             210803 171 + 155549662 GTA--------TCACCCCCTAACTGCATCTATTTTGGTGGTGTTCATGATAATAATAAATGTCA--TGCATATCTCTGATTGAACTTGGCCCGTTCTTGAGCTCGTTAGAAACAGGTTTTCCTATGTGCCATCTCTTATTTTTCTTGGTAATACTTGGAGCTGAGATT------------TCTTTT----TCTCTTC
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   145717 166 +    417917 GTA--------TCACCCCCTAACTGCATCTATTTTGGTGATGTTCATGATAATAATAAATGTCA--TGCATATCTCTGATTGAACTTGGCCCGTTCTGGAGCTCGTTAGAAACAGGTTTTCCTATGTGCCATCTCTTATTTTTCTT-GTAATGCTTGGAGCTGAGATT------------tctttt----tct----
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 120970 157 -    811265 CTATCTTTAGTTCACCCACTGACTGCGTGTATTTTGGTGGTGTTCATCGTAGTAATACATGTCATGTGCCTGTCTCTGATTGAA-----------------CTCATTAGAAACAGGTTTTCCTATGTG-CATCTCTTATTTTTCTTGGTCATGCGTGGAGCTGAGGtt------------tctttc----t------
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         121282 158 +  11138919 ---------GTGTGCCCCGGGACCCCACCTTTGCTAGGGTCTTGCGTGGTGATAATTAGCATCA--TCCGCATCTCTGAGGGACCTTGGCTCATGCTGGAGCCTGCTGGAAGCAGGTGTCCATATGGGCTA----------------GAGATATGCAGAGCTGAGCTTGGTCTGGTCCACccttt------------
i otoGar3.GL873584         I 18 I 4747
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=21618.000000
s hg38.chrX_KI270880v1_alt  76687 71 +    284869 CTTCCTCTCTCTTTCTCTCTTTCTTCCTCTCTCTTTCTCTCttccttcctctctctttctctcttccttcc
s panTro5.chrX             210974 67 + 155549662 CTTCCTCTCTCTTTCTCTCTTCCTTCCTCTCTCTTTCTCTCTTCCTTC----CTCTTTCTCTCTTCCTTCC
i panTro5.chrX             C 0 I 456
s gorGor5.CYUI01015925v1   145883 63 +    417917 ----ctatctctttctctcttccttcctctctctttctctcttccttc----ctctttctctcttccttcc
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 121127 43 -    811265 ----ttctctctttctctctt--tttctctctctttctctcttccttt----g------------------
i chlSab2.chrUn_KE147541v1 C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121440 4747 +  11138919 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=148741.000000
s hg38.chrX_KI270880v1_alt  76758 669 +    284869 gagacagggtctcactccgttacccaggctggagtgcggttgtacgatcacagctgct---------------------gtcttgacctcctaggctcaagtgatcctccaccctcagcctcccgagtagctgagactgcaggcatgcaccgccatgcccgcctaattttttt-atttttttctagagatggggtctgactatgttgcccaggctggtctcaaactcttggcctcaagcaatcctcctgcctcgacctcccaaagtgctgggattacaggcgtgagctaccgcacgcagccTTGAATCCTTTTAATAAGTACTTTCCTCTTATCCACGACCCAGAA---CATCACACTGTAGACAGTTGTTTAGGGTTTTG-AAAGAtttatatttttaat--------tttttttttttttttgagac--agtcttgctcttttgcccaggccggactgcagtggcacaatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccaccaccacgcccggctaattttttgtatttttagtagaggtgggatttcaccgtgttagtcaggatggtctcgatctcctagccttgtgatccgcccgcctcagcctcacgaagtgctgggatgacaggcgtgagccaccgcgcccggcc
s gorGor5.CYUI01015925v1   145946 703 +    417917 gagacagggtctcactccgttacccaggctggagtgcggttgtacggtcacagccgctgtcttgacctcctaggctcaagtcttgacctcctaggctcaagtgatcctccaccctcagcctccctagtagctgagactgcaggcgtgcaccgccatgcccgcctaattttttt-atttttttctagagatggggtctgactatgttgcccaggctggtctcaaactcttggcctcaagcaatcctcctgcctcgacctcccaaagtgctgggattacgggggtgagccaccgcacgcagccTTGAATCCTTTTAATAAGTACTTTCCTCTTATCCACGACCCACAACATCATCACACTGTAGGCAGTTGTTTAGGGTTTTGAAAAGATTTATAtttttaattttttttgtttttttttttttttgagacagagtctcactctgtcgcccaggctggagggcagtggtgtgatctcggctcactgcaagctccgcctcctgggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcccagctaattttttgtatttttagtagagatggaatttcaccatgttagtcaggatggtct-gatctcctagccttgtgatcctctcgcctcagcctcacgaagtgctgggttgacagacgtgagccaccgcgcccggcc
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 121170 662 -    811265 gagacagggcctcgctctgttacccaggctgcagtgtggttttacgatcccacctgca---------------------gcctccacctcccaggctcaagtgatcctccaacctcagcctcctgagcagc------------cgtgcaccaccacgcccgcctaatttttttcatttttttctagagacgggttgtgactatgttgcccaggctggtctcaaactcatggcctcaagcaatcctcctgcctcagcctcccaaagtgctgggatttcaggcgtgagcctccgcacgcagccTGGAATCCTTTTAATAAGTACCTTCCTCTTATCCACGACCCAGAACGTCATCACACTGTAAGCAGTCATTTAGGGTTTTG-AAATAATTATAtttttaatt-------tttttttttttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggccggatctcagctccctgcaagctccgcctcccgggtttacgccattctcctgcctcagcctcctgaatagctgggactacaggcg-ccgccacctcgcccggctag-tttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctgcgatgacaggcgtgagccaccgcgtccagcc
i chlSab2.chrUn_KE147541v1 C 0 I 586
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121440 4747 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=87640.000000
s hg38.chrX_KI270880v1_alt  77427 1016 +    284869 AA-ttttttttttgagctaggatctcactctgtcaccaggttggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccaggctcaagcgatcctcccacctcagcctcccaattagctgggaccacaggcacctgccaccacacctggctaattttttttgtagagacggggttttgacatgttgtccaggctggtctcaaactcctgagctcaagcaatctactggtctcggcctcccaaagtgcggagatgaccaccatgagtgaccgtgccaggccTCTGTTTTTAAttttgtaattgagatacattccacataacataaaaggaaccgttttaaagtgaacaggggcatttaaaacatccacaatggcgtaccaccacctctgtctagttccggaacacttgcgctgggcatggtggttcacgcctgtcatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcaaaaccagcctggccaacatgacgaaaccccatctctactaaaaatacagaagttagctgggtttggtggctggtgcctgtaatcccagatacttgggaggctgaggcaggagaatcacttgagcctgggaggcggaggttgcagtgagccgagatcacgccactgcgctccaggctgggccacagagcgagacccggtctcaaaaataaacaaacaaaccaacaacaacaaaaggtctggagcattttcttcaccccaaaagtaaaccctgtccccattaacagtcattcgtccccctccccatcccctggcaa-ccacccatccactttctgcctccatggatttgcctgttctggacctttcctagaaatggaatcttactctatgtggccttttgtgtctggcttctctcacggagtgtgacatcctcaaggctcatccacattgcagcctgtgtcacagcctcgttccttttcatggctgcatactattccaccatgtggatggaccacattgtgcta
s gorGor5.CYUI01015925v1   146649 1013 +    417917 AAtttttttttttgagctaggatctcattctgtcaccaggttggagtgcagtggtgcgatctcagctcactgcaacctcc-cttaccaggctcaagcgatcctcccacctcagcctcccaattagctgggaccacaggcgcacgccaccacacctggctaa-tttttttgcagagacggggttttgacatgttgtccaggctggtctcgaactcctgagcttaagcaatctactggtctcggcctcccaaagtgctgagatgaccaccatgagtgaccgtgccagg-cTCTGTTTTTAAttttgtaattgagatacgttccacctaacataaaatgaaccattttaaagtgaacaggggcatttaaaacatccacaatggcgtaccaccacctctgtctagttccggaacacttgcgccgggcatggtggctcacgcctgtcatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcaaaactagcctggccaacatga-gaaa-cccgtctctattaaaaatacaaaagttagctgggtttggtggcacgtgcctgtaatcccagatactcgggaggctgaggcaggagaatcgcttgagcccgggaggcggaggttgcagtgagccgagatcaagccactgtgctccaggctgggccacagagtgagacccggtctcaaaaataaacaaacaaaccaacaacaacaaaaggtctggagcattttcttcaccccaaaaggaaaccctgtccccattaacagtcattcgtccccctccccatcccctggcaacccacccatccactttctgcctccgtggatttgcctgttctggacctttcctagaaatggactcttactctatgtggccttttgtgtctggcttctgtcactgagtgtgacgtcctcaaggctcatccacattgcagcctgtgtcagagcctcgttccttttcatggctgcgtactattccaccatgtgggtcgaccacattgtgcta
i gorGor5.CYUI01015925v1   C 0 I 182
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121440 4747 +  11138919 I
e panTro5.chrX             211041  456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832  586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130  706 +  25972781 I

a score=26114.000000
s hg38.chrX_KI270880v1_alt  78443 308 +    284869 atccacccatccactggtggacacttgagtggtttctgcttttgggccgttacgaaatccagctactgtgaaACAGTTCACttttattttattttatttatttatttttttgagatggagtctcgctatctcgcctgtgcta-----tagtggcagaatctcggctcactgcaagctccgcctcccaggttcaagtgactctcctgcctcagcctcccgagtagctgggattacagtcacccaccagcatgcccagctaatttttgtagttttagtagagacagggtttcaccatgttggccgggctggtctc
s gorGor5.CYUI01015925v1   147844 313 +    417917 atccacccgtccactggtggacacctgcgtggtttctgcttttgggccgttacgaaatccagctactgtgaaACAGCTCACttttattttattttatttatttatttttttgagatggagtctcgctgtctcacctgtgctagagtatagtggagcaatctcggctcactgcaagctccgcctcccaggttcaagcgactctcctgccttagcctcccgagtagctgggattacagtcgcccaccaccatgcccggctaatttttgtatttttagtagagacggggtttcgccatgttggccaggctggtctc
i gorGor5.CYUI01015925v1   I 182 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121440 4747 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=33178.000000
s hg38.chrX_KI270880v1_alt  78751 135 +    284869 gaactcctgacctcaggtgatccacccgtctcagtctcccaaagtgctgggatgttgcaggcgtgagccaccgcg-cTGGCCTCTAGGTGATTCTTTAACTAGAACGATAGATATCGGACTTTTGCTATGGGGTGG
s gorGor5.CYUI01015925v1   148157 135 +    417917 gaactcctgacctcaggtgatccacccgtctcggtctcccaaagtgctgcgatgttgcaggcgtgagccaccacg-ccggccTCTAGGTGATTCTTTAACTAGAACGATAGATATCGGACTTTTGCTATGGGGTGG
i gorGor5.CYUI01015925v1   C 0 C 0
s nomLeu3.chrX             173461 136 + 141252148 gaactcctgacctcaggtgatccacccgtctcggtctcccaaaatgctgggatgttacaggcatgagccactgcacccagccTCTAGGTAATTCTGTAACTAGAATGACAGATATAGGAATTTTGCTATGGGGTGG
i nomLeu3.chrX             N 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         121440 4747 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=41217.000000
s hg38.chrX_KI270880v1_alt  78886 142 +    284869 ATTTTCCTCCTAATCTGAAATGAGGCAAAAAGTCTTAGCATGTCA-----------GATGTGACGCCTTCTTTTATTTCGCTCAGCATAAATTTTAAGCAAATTGAGAATGGAGCCTGGGTACCCATTTCGGTAAAAGCTTTG--------------------TTTTTTTTTT
s gorGor5.CYUI01015925v1   148292 162 +    417917 ATTTTCCTCCTAACCTGAAATGAGGCAAAAAGTCTTAGCATGTCA-----------GATGTGATGCCTTCTTTTATTTCACTCGGCACAATTTTTAAGCAAATTGAGGATGGAGACTGGGTACCCATTTCAGTAAAAGCTGtgttttttttgttttttttgtttttttttttt
i gorGor5.CYUI01015925v1   C 0 C 0
s nomLeu3.chrX             173597 141 + 141252148 ATTTTCCTCCCAACCTGAAATGAGGCAAAGAGTCTTAGCATGTCA-----------GATGTGATGCCTTCTTTTATTTCACTCAGCACAA-TTTTAAGCAAATTGAGACTGGAGCCTGGGTACCCATTTCGATAAAAGCTGtt--------------------tttttttttt
i nomLeu3.chrX             C 0 N 0
s otoGar3.GL873584         126187 140 +  11138919 ATTTTCCCTCTAAACTAAAA-----CAAAAACCCTTAGGGTGTCATACTGCCTTCTGACGTGATA-CTGCCTCTGTTTCCGTCAGTTCTA-TTTTAAGTAGCTTGGGAATGAGGTCTGGAC-CCCAGTTTGATTAAAGCTGGT--------------------TTTCC-----
i otoGar3.GL873584         I 4747 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=15612.000000
s hg38.chrX_KI270880v1_alt  79028 79 +    284869 TCTGCGTAAGACCTACATTTGACTCAGAGTGTAGTTGGTGAAATGCACATTTTTCTTAATGACAGAAGGACGTATttct
s gorGor5.CYUI01015925v1   148454 79 +    417917 tCTGCGTAAGACCTACATTTGACTCAGAGTGTAGTTGGTGAAATGCACATTTTTCTTAATGACAGGAGGACATAtttct
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         126327 79 +  11138919 CCTTGGTGAGACCTGCATTTGACTTGGCGCACCATTGGTGGAATGCGCATTTTTCTTAGTGACATGGGGCTGTGTTTCT
i otoGar3.GL873584         C 0 I 570
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=29129.000000
s hg38.chrX_KI270880v1_alt  79107 348 +    284869 ttctttctttctttctttttttttttgagacagactgtcactctgtcgcccaggctggaatgcagtgtcgtgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctagtagctgggactacaggcacccgccaccacgcccggctaattttttgtatttttaatagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcagtctcccacagtgctgggattacaggcgtgagttaccgtgcccggccGAAATGCACATTTTTCTGAATGACAGAAGGATGTAtttc--tt
s gorGor5.CYUI01015925v1   148533 348 +    417917 ttctttctt--tttttttttttttttgagacagactctcactctgtcgcccaggctggaatgcagtggcgcgatctcggctcacttcaagctccgcctcccgggttcacgccattctcctacctcagcctcccgagtagctgggactacaggcgcccaccaccatgcccggctaattttttgtatttttactagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggtctcccacagtgctgggattacaggcgtgagttaccgtgcccggccAAAATGCACATTTTTCTTAATGACAGAAGGACGTAtttctttt
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         126406 570 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=49622.000000
s hg38.chrX_KI270880v1_alt  79455 303 +    284869 tttttttttctttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaag-ctccacctcccgggttcatgccattctcctgcctcagccgcctgagtagctgggactacaggcgcccgccacc-acgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgagccgcccacctcggcctcctaaagtgctgggatttacaggcgtgagccactgcgcccggccAGA
s gorGor5.CYUI01015925v1   148881 303 +    417917 tttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaag-ctccacctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcagccgccaccgacgcccggctattttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgagctgcccgcctcggcctcccaaagtgctggga-tgacagacgtgagccactgcgcccggccAGA
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         126976 294 +  11138919 tttgtattttattttttgagacaaggtctcattctgtccatcaggttagggtgcagtggtctcgtcagagctcactgcaagcctccaacttctaacctcaagtgatcctcctgcttcagcctccc----agctgggactacaggtacatactacc-acattcagctagttttc---tatttttagtagagatgggttctcac--tcttgctcaggttggtctccatctcctgaactcaagggatccttcttcctt-gccttgcagagtgctgggg-ttacaggtgagagtc-ctatgcctggccAGA
i otoGar3.GL873584         I 570 I 1253
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=54626.000000
s hg38.chrX_KI270880v1_alt  79758 615 +    284869 AGGACGTATTTCTGATAGCCAGGGGTAGTGATTTACAGCACTGTAGTACAGAAAACTGtttttttcctctttgtaaaaggagtagttgctgattggagaaaacttgggaagtacagagagtattcaaaaaTCAGGGCTGGGctttgggaggctgaggcaggcggatcacaaggtcaggagttcgtgaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaattagctgggtggggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcaatgagccgagattgcaccactgcactccagcctgggcaacagagcgagatgccatctg---------aaaaaaaaaaaaaaaaaaaaaaagccgggccggatggctcctgcctgtaatcccagtactttgggaggctgaggtgagaggatcactggagcctaggaatttgagatgagcttgggcaacatagcaagaccccatctctaccaaaaagcaaaaTTAgctgggcatggtggcccatgctgtagtcccagctactcgggaggctgaggcaggcggattacttgatcccaggag
s gorGor5.CYUI01015925v1   149184 624 +    417917 AGGACGTATTTCTGATAGCCAGGGGTAGTGATTTACAGCACTGTAGTACAGAAAACTGTTTTTTTCCTCTTTGTAAAAGGAGTAGTTGCTGATTGGAGAAAACTTGGGAAGTACAGAGAGTATTCAAAAATCAGGGCTGGGctttgggaggctgaggcaggcggatcacaaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatccaaaattagctgggtgtggtggcacgcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcaatgagccgagattgcaccactgcactccagcctgggcaacagagtgagatgccatctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccgggccggatggctcatgcctgtaatcccagtactttgggaggctgaggtgagaggatcactggagcctaggagtttgagatgagcctgggcaacatagcaagaccgcatctctaccaaaaagcaaaattagctgggcatggtggcccatgctgtagtcctagctactggggaggctgaggtgggaggatcacttgagcccaggag
i gorGor5.CYUI01015925v1   C 0 I 217
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         127270 1253 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=0.000000
s hg38.chrX_KI270880v1_alt  80373 51 +    284869 tttgaaactagtctgggcaacgtagtgagatgccatctctacccccccccc
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         127270 1253 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I
e gorGor5.CYUI01015925v1   149808 217 +    417917 I

a score=33221.000000
s hg38.chrX_KI270880v1_alt  80424 472 +    284869 aaaaaaaattagcccagcatggtggtgtgca-cctgtagtcctagctactcgggaggctgaggtgggaggatcacttgagcccaggaggtcaaggctgcagtgagccgagatcacaccattgcattccagcctgggcaacagagcaagaccctgtctcacataaaataaaataaaTAggccgggcgcagtggctcatgcctgtcatcccacactttgtgaggccgaggcgggcggatcacgaggtcaggagtttgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaatagccgggcatggtggcgggcgcctgtagtcccagctactcgggaggacgaggcaggagaatggcgtgaacccgggagacggagcgtgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaa
s gorGor5.CYUI01015925v1   150025 469 +    417917 aaaaaaaattagccgggcatggtggcgggtggcctgtagtcccagctacttgggaggccgaggcaggagaatggcgtgaacccgggaggccaagcttgcagtgagctgagattgagccactgcactccagcctgggcaacagagcaagaccccgtctcaaaaaaaaaaaaaaaaa-aagccaggggcagtggctcaggtctgtaatccagcactttgggagcccgagttgggcggatcacaaggtcaagagattgagaccatcctggctaacacggtgaaaccccatctctactcaaaatacaaaaaaataa---tagccgggcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaagccgagcttgcagtgagctgagattgagccactgcactccagcctgggcaacagagcaagaccccgtctcaaaaaaaaaa
i gorGor5.CYUI01015925v1   I 217 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         127270 1253 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=1903.000000
s hg38.chrX_KI270880v1_alt  80896 22 +    284869 aaaaa------GTCCAGACATGGTTGTT
s gorGor5.CYUI01015925v1   150494 28 +    417917 aaaaaaaaaaaGTCCAGACATCATTGTT
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         128523 22 +  11138919 AGAAG------ACCCAGATGTCACCCTT
i otoGar3.GL873584         I 1253 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e colAng1.NW_012115411v1   197437 3029 +   1230721 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=7172.000000
s hg38.chrX_KI270880v1_alt  80918 19 +    284869 CAACAGCACAGAGGGACGT
s gorGor5.CYUI01015925v1   150522 19 +    417917 CAACAGCACAGAGGGACGT
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   200466 19 +   1230721 CAACGGCACGGAGGGACGT
i colAng1.NW_012115411v1   I 3029 C 0
s otoGar3.GL873584         128545 19 +  11138919 TAACAGTGCTGTGGGGCAT
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 121832 586 -    811265 I
e cerAty1.NW_012001098v1   135072 2796 -   1025902 I
e macNem1.NW_012017243v1   187130 706 +  25972781 I

a score=25154.000000
s hg38.chrX_KI270880v1_alt  80937 17 +    284869 CTTGCTGAGAAGTGGCC
s gorGor5.CYUI01015925v1   150541 17 +    417917 CTTGCTGAGAAGTGGCC
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   187836 17 +  25972781 CTTGCTGAGAAGTGGCC
i macNem1.NW_012017243v1   I 706 C 0
s cerAty1.NW_012001098v1   137868 17 -   1025902 CTTGCTGAGAAGTGGCC
i cerAty1.NW_012001098v1   I 2796 C 0
s chlSab2.chrUn_KE147541v1 122418 17 -    811265 CTTGCGGAGAAGTGGCC
i chlSab2.chrUn_KE147541v1 I 586 C 0
s colAng1.NW_012115411v1   200485 17 +   1230721 CTTGATGAGAAGTGGCC
i colAng1.NW_012115411v1   C 0 I 39
s otoGar3.GL873584         128564 17 +  11138919 CTTGTCATAAATTGGCA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I

a score=38965.000000
s hg38.chrX_KI270880v1_alt  80954 44 +    284869 GGACGAGGCTGCCCCAGACACCGCAGCCCTCTCCTCCTGCCCCC
s gorGor5.CYUI01015925v1   150558 44 +    417917 GGACGAGGCTGCCCCAGACACCACAGCCCTCTCCTCCTGCTCCC
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   187853 44 +  25972781 GGAGGAGGCTGCCCCAGACACCACGGCCGTCTCCGCCTGCCCCC
i macNem1.NW_012017243v1   C 0 I 14
s cerAty1.NW_012001098v1   137885 44 -   1025902 GGACGAGGCTGCCCCAGACACCACGGCCGTCTCCTCCTGCCCCC
i cerAty1.NW_012001098v1   C 0 I 12
s chlSab2.chrUn_KE147541v1 122435 44 -    811265 GGACGAGGCTGCCCCAGTCACCACGGCCGTCTCCTCCTGCCCCC
i chlSab2.chrUn_KE147541v1 C 0 I 10
s otoGar3.GL873584         128581 40 +  11138919 GGCTGAGAGTACCTCAGACA---AGGGGGTCTATCCTTGCACC-
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e colAng1.NW_012115411v1   200502 39 +   1230721 I

a score=45753.000000
s hg38.chrX_KI270880v1_alt  80998 34 +    284869 CACACCCTCCAGGACTGAAGAGGCCGTAGGCTCG
s gorGor5.CYUI01015925v1   150602 34 +    417917 CACACCCTCCAGGACTGAAGAGGCCGTCGGCTCG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   187911 34 +  25972781 CACACCCTCCAGGACTGAAGAGGCCGTGGGCTCG
i macNem1.NW_012017243v1   I 14 I 4
s cerAty1.NW_012001098v1   137941 34 -   1025902 CACACCCTCCAGGACTGAAGAGGCCGTGGGCTCG
i cerAty1.NW_012001098v1   I 12 I 4
s chlSab2.chrUn_KE147541v1 122489 34 -    811265 CACACCCTCCAGGACTGAAGCGGCCGTGGGCTGG
i chlSab2.chrUn_KE147541v1 I 10 I 4
s colAng1.NW_012115411v1   200541 34 +   1230721 CACACCCTCCAGGAGTGAAGAGGCCGTGGGCTCG
i colAng1.NW_012115411v1   I 39 I 62
s otoGar3.GL873584         128621 30 +  11138919 ---ACCCT-GAGGGTTCAAGAAAATGGCAGCTGA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I

a score=77028.000000
s hg38.chrX_KI270880v1_alt  81032 122 +    284869 GCCGGCAGCATCTGCTCCCTTTGTCCTCCAAAGGAACCCGTGTGTGGAAGGAATGCCTCCGGGGAGAACAGCTGACGTCCGG-TGCCG-TTTTGGCAGCACGGAACCCC--AGTTATTTTCAGATG
s gorGor5.CYUI01015925v1   150636 123 +    417917 GCCGGCAGCATCTGCTCCCTTTGTCCTCCGAAGGAACCCGTGTGTGGAAGGAATGCCTCCGGGGAGAACAGCTGACGTCCGGGTGCCGGTTTTGGCAGCACG-AACCGG--AGTTATTTTCAGATG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   187949 105 +  25972781 GCGGGCACCATCTGCCGTCTTTGTCTTCCGAAGGAGCC--TGTGTGGAAGGGACGCCTCCGGGGAGAACAGCTGCCGTCCGGGAGCCG-TTCT------------------GGTTATTTTCAGGCC
i macNem1.NW_012017243v1   I 4 C 0
s cerAty1.NW_012001098v1   137979 104 -   1025902 GCAGGCACCATCTGCCGTCTTTGTCTTCCGAAGGAGGC--TATGTGGAAGGAACGCCT-CGGGGAGAACAGCTGCCATCCGGGTGCCG-TTCT------------------GGTTATTTTCAGGCC
i cerAty1.NW_012001098v1   I 4 C 0
s chlSab2.chrUn_KE147541v1 122527 123 -    811265 GCAGGCGCCATCTGCCGTCTTTGTCTCCCGAAGGAGCC--TGTGTGGAAGGAACGCCTCCGGGGAGAACAGCTGCCGTCCGGGTGCCG-TTCTGGCTGCACAGAACCCGGGGGTTATTTTCAGGCC
i chlSab2.chrUn_KE147541v1 I 4 C 0
s otoGar3.GL873584         128651 104 +  11138919 ACTGGCA-CAGCTGGTTCC-----------AGGAAGCC--TGTGTGCAGGGGACACCCTTGGGGAGAACAGCTGAATTCAGG--GCCC-CCCTGGCAGTACATAACTC---AGCTATTTTAGGG--
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e colAng1.NW_012115411v1   200575  62 +   1230721 I

a score=126490.000000
s hg38.chrX_KI270880v1_alt  81154 104 +    284869 TCTTGTTCGTGCCCCAGAGGTCAGGGACCAGCAGCTTTCAGGAAGCCTCGGCCAGGCACTGCGTTAACTCCGCGA-TGACTTTCTGGCTGCAGAATCCCAACTAT
s gorGor5.CYUI01015925v1   150759 104 +    417917 TCTTGTTCGTGCCCCAGAGGTCAGGGACCAGCAGCTTTCAGGAAGCCTCGGCCACGCACTGCGTTAACTCCGCGA-TGACTTTCTGGCTGCAGAATCCCAACTAT
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   188054 104 +  25972781 TCTTCTTCGTGCCCCAGAGGTCAGGGAGCAGCAGATTTCAGGAAGCCTCGGCCACGCGCTGCGTCAGTGCTGCCG-TGACTTTCTGGTTCCAGAATCCCAGGAAT
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   138083 104 -   1025902 TCCTCTTCGTGCCCCAGAGGTCGGGGAGCAGCAGATTTCAGGAAGCCTCGGCCACGCGCTACGTTAGTGCTCCCG-TGACTTTCTGGTTCCAGAATCCCAGGAAT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 122650 105 -    811265 TGTTCTTCGTGCCCCAGAGGTCAGGGAGCAGCAGATTTCAGGAAGCCTTGGCCACGCGCTGCGTTATTGCTGCCGTTGAGTTCCTGGTTCCAGAATCCGAGGAAT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   200637 104 +   1230721 TCTTCTTCGTGCCCCAGAGGTCAGGGAGCAGCGGATTTCAGGAAGCCTCGGCCACGCACTGCGTTATTGCTGCCA-TGACTTTCTGGCTCTAGAATCCGAAGTAT
i colAng1.NW_012115411v1   I 62 C 0
s otoGar3.GL873584         128755 103 +  11138919 CCCCCTCCATGCTACAGAGGCTCCATACCAGCACATTGTAGGAAGTCACAGCCATGCTTGAATTTAGAGATGTT--TTACCCCCAGACTGTAGAATCCTAAGTAT
i otoGar3.GL873584         C 0 I 110
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I

a score=62416.000000
s hg38.chrX_KI270880v1_alt  81258 50 +    284869 GCAATTCACTCTTAAT-CCCCAGCTTCAAGGCACTGTCAGGCGTTTCCGTG
s gorGor5.CYUI01015925v1   150863 50 +    417917 GCAATTCACTCTTAAT-CCCCAGCTTCAAGGCACTGTCAGGCGTTTCCGTG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   188158 50 +  25972781 GCGATTCACTCTTAAT-CCCCACCTTCAAGGCTCTGTCAGGCATTTCCGTG
i macNem1.NW_012017243v1   C 0 I 798
s cerAty1.NW_012001098v1   138187 50 -   1025902 GCGATTCACTCTTAAT-CCCCACCTTCAAGGCTCTGTCAGGCATTTCCGTG
i cerAty1.NW_012001098v1   C 0 I 2084
s chlSab2.chrUn_KE147541v1 122755 51 -    811265 GCGATTCACTCTTAATCCCCCACCTTCAAGGCTTTGTCAGGCATTTCCGTG
i chlSab2.chrUn_KE147541v1 C 0 I 11
s colAng1.NW_012115411v1   200741 50 +   1230721 GCGATTCACTCTTAAT-CTCCACCTTCAAGGCCCTGTCAGGCATTTCCGTG
i colAng1.NW_012115411v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         128858 110 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I

a score=7370.000000
s hg38.chrX_KI270880v1_alt  81308 34 +    284869 ACAAAAACTCTCTCttttttttttcttttcttct
s gorGor5.CYUI01015925v1   150913 34 +    417917 ACAAAAACTCTCTCTTTTTTTTTTCTTTTCTtct
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   200791 33 +   1230721 -CAGAAACACACttttttttttttcttttttttt
i colAng1.NW_012115411v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         128858 110 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122806 11 -    811265 I
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e macNem1.NW_012017243v1   188208 798 +  25972781 I

a score=1638.000000
s hg38.chrX_KI270880v1_alt  81342 3 +    284869 ttt
s gorGor5.CYUI01015925v1   150947 3 +    417917 ttt
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 122817 3 -    811265 ttt
i chlSab2.chrUn_KE147541v1 I 11 C 0
s colAng1.NW_012115411v1   200824 3 +   1230721 ttt
i colAng1.NW_012115411v1   C 0 I 6753
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         128858 110 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e macNem1.NW_012017243v1   188208 798 +  25972781 I

a score=4048.000000
s hg38.chrX_KI270880v1_alt  81345 21 +    284869 gtttttttttttttttttttt
s gorGor5.CYUI01015925v1   150950 14 +    417917 -------tttttttttttttt
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 122820 21 -    811265 gtttttttttttttttttttt
i chlSab2.chrUn_KE147541v1 C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         128858 110 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   188208 798 +  25972781 I

a score=28528.000000
s hg38.chrX_KI270880v1_alt  81366 339 +    284869 gaaatggagtcttgctctgtcacccaggctggagtgcagtggtgttatctctgctcacagcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcccggc-taatattttgtattccttgtagagatggggtttcagcatctctacgctatttccaaataaggtcccaggctgggggcggtggctcacacctataatgttggccaggctggtctcgacctcctgacctcaagcgatccacccgcctcggcctcccaaaatgccgggatgacaggcgtaagccaacgcgcc-----------------------------------------------cggc
s gorGor5.CYUI01015925v1   150964 387 +    417917 gagatggagtcttgctctgtcacccaggctggagggcagtggtgttatctctgctcaccgcaacctccgcctcccgggttcaagcgattgtcctgcctcagcctcctgagtagctggaactacaggcacccgccaccacgcccggcctaatattttgtattctttgtagagatggggtttcaccatctctacgctatttccaaataaggtcccaggccgggggcggtggctcacacctataatgttggccgggctggtctcgacctcctgacctcaagcgatccacccgcctcggcctcccaaaatgccgggatgacaggcgtgagccaacgcgccggccAGAAGCACGCTTCTCCAGGACGAGAAGCGTGAGCCACCACGCCCAGC
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         128858 110 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   188208 798 +  25972781 I

a score=13925.000000
s hg38.chrX_KI270880v1_alt  81705 115 +    284869 cAGAAACCTGCTATATTCTGCACCGTTTTT-CCGGGTCCAGGCAGACGTGGGTCC--CTGTGGTTTCAGAGCACAAGTGGTGTTTTATGGAATCATCTTCGCTGTGGCAAGCACACTA
s gorGor5.CYUI01015925v1   151351 116 +    417917 CAGAAACCTGCTATATTCTGCACCGTTTTTTCCGGGTCCAGGCAGACGCGGGTCC--CTGTGGTTTCAGAGCACAAGTGCTGTTTTATGGAATCATCTTCGCTGTGGCAAGCACACTA
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         128968 115 +  11138919 CAGAAATGCAGTGTTTTATGCATCCTTTG--CTGGGTGGAGGCAGACGTGGGGACAGCTTTGAGTTTGGGACACCAGTGGTA-TTTGTGTAATGGTGTGTTACCTGCCAAGCTCAGGT
i otoGar3.GL873584         I 110 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   188208 798 +  25972781 I

a score=12755.000000
s hg38.chrX_KI270880v1_alt  81820 49 +    284869 TGGTAGATGGGATAGGGTGGGTGTTGGTGGTGAGGAAGAGGTCGTGCCC
s gorGor5.CYUI01015925v1   151467 49 +    417917 TGGTAGATGGGATAGGGTGGGTGTTCGTGGTGAGGAAGAGGTCGTGCCC
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   189006 49 +  25972781 TGGCAGATGGGATAGAGTGGATGTTGGTGGTGAGGAGAAGGTCGTGCCC
i macNem1.NW_012017243v1   I 798 I 46
s otoGar3.GL873584         129083 36 +  11138919 TGGCAGCGGGACCA--GTGCATTCTGGTGCTGA-----------TGCTT
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I

a score=7461.000000
s hg38.chrX_KI270880v1_alt  81869 70 +    284869 GTCCGTGGATGACGTGGGAAGCTCTCGAAGAGTTGCTGGCATTTGTACCTGTTTGCACGCAGCAGCGCTC
s gorGor5.CYUI01015925v1   151516 70 +    417917 GTCCGTGGATGAGGTGGGAAGCTCTCGAAGAGTTGCTGGCATTTGTACCTGTTTGCACGCAGCAGCGCTT
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         129119 57 +  11138919 TGCTGGGGATGGGATGTCAAGATGTCCAAGAGTT-TTTGCATTTTTAACTGTC---------CAGCT---
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   189055 46 +  25972781 I

a score=62166.000000
s hg38.chrX_KI270880v1_alt  81939 201 +    284869 TGAGTGGCAGAGACAGGATGTCCCCCAGATCCCACGTCCCC-GCAGTTGTTAGTGAGACGGATGCCTCGGGATGTGCCTTGGTCTCTGGTTTGAGAACGTTTCTGTTGACTTGCCATTTTCTAACCACGGGGCGCACAGCAGAGTCAGAACTGGGTTACAGAACGTGGGCTATGGACTCCAGTTGCCTTTCTGACCTACTTT
s gorGor5.CYUI01015925v1   151586 200 +    417917 TGAGTGTCAGAGACAGGATGTCACCCAGATCCCACGTCCCCGGCAGTTGTTAGTGAGACGGATGCCTCGAGATGTGCCTCGGTCTCTGGTTTGAGAACGTTTGTGTTGACTTGCCATTTTCTAACCACGGGGCACACGGC--AGTCAGAACTGGGTTACAGAAAGTGGGCTATTGACTCCAGATGCCTTTCTGACCCACTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   189101 184 +  25972781 TGAGTGGCAGAGACAGGACGTCCCCCAAATCCCACGTCCCCCGCAGTTGTTGGTGAGACAAATGCGTCAAGATAGGCCTTGGTCTCCAGTTTGAGAAC------------------TTTTCTAACCACGGGGCACATGGTAGAGTCAGAACTGGGTTACAGAAAGTGGGTTATCAATTCCAGATTCCTTTCTGACTCACTTT
i macNem1.NW_012017243v1   I 46 C 0
s otoGar3.GL873584         129176 192 +  11138919 ---ATGGCAAATGCC-----TTCACAGTACCCCATGTTCCC-ACAGTTGTT-GTGATGCAAATGGCTCCAGACACTTCTGGCTGTATAGTTTGTGAACTTTTCTGTTGAATTGCTATTTCCTAGTGACAGGGAGCATGGCAGAGTTGAAATTGGGTTACACAAAGTGGGTTATTAACTCTGGACTCCTTTCTGACCCATTTT
i otoGar3.GL873584         C 0 I 3848
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I

a score=21933.000000
s hg38.chrX_KI270880v1_alt  82140 110 +    284869 ATTTTGTTTTGTTAttttattttatttatttat-ttatt----ttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctcc
s gorGor5.CYUI01015925v1   151786 114 +    417917 ATTTTGTTTTGTTAttttattttatttatttat-ttattcatattttgagacggagtctcgctctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaagctcc
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   189285  94 +  25972781 G-----------------Attttatttattagtattatt----ttttgagacggagtctcgctctgccgcccaggctggagtgcagtggcccgatctcagctcactgcaagctcc
i macNem1.NW_012017243v1   C 0 I 6797
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I

a score=59880.000000
s hg38.chrX_KI270880v1_alt  82250 688 +    284869 gcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacacccggctaattttttgtatttttagtagagacggggtttcaccgtgttggccaggctggtctcaaactcctgacctcaagtgatcggcccaccttggcctcccaaagtgctgggattacaggcgtgagccatcacgtccggccTTCaagtacactttctgttgaatgcatactgctttctctccagcataaagttaaaaaatcctgaattgcaccattggaagctggggactgtctgTATGCAATATTATGTATAGTTTGAtttc-tttttttgcattttttttttaaatttttttgagacagagttacactcttgttgcccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagtctcccaagtagctgggatgacaggcgtgagccaccacgcccggctaattttgtatttttagtggagatggggtttctccatgttggccaggctggtctcgaactcctgacctcgtgatccgctcgcctcagccacccaaagtgctgagataacaggcgtgagccaccgtgcctggcTAAttttgtatttttagtggagatggggtttctccatgttgg
s gorGor5.CYUI01015925v1   151900 687 +    417917 gcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctgacctcaagtgatcagcctgcctcggcctcccaaagtgttgggattacaggcatgacccatcacgtccggccTTCaagtacactttctattgaatgcatactgctttctctccagcataaagtttaaaaatcctaaattgcaccattggaagctggggactgtctgTATGCAATATTATGTATAGTTTGATttcttttttttgcatttttttttt-tatttttttgagacagagttacactcttgttgcccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccgggttcaaacgattctcctgcctcag-cccccaagtagctgggattatgggcatgagccaccacgcccggctaattttgtatttttagtggagatggggtttctccatgttggccaggctggtctcgaactcctgacctcgtgatccgctcacctcggccacccaaagtgctgagattacaggcatgagccaccgcgcccggcTAAttttgtatttttagtggagatggggtttctccacgttgg
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=0.000000
s hg38.chrX_KI270880v1_alt  82938 132 +    284869 ccaggctggtctcgaactcctgacctcgtgatccgctcgcctcagccacccaaagtgctgagataacaggcgtgagccaccgtgccgggctaactttgtatttttagtggagatggggtttctccatgttgt
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   152587   0 +    417917 C

a score=28317.000000
s hg38.chrX_KI270880v1_alt  83070 383 +    284869 ccaggctggtctcgaactcctgacctcatgacccgctcgcctcggccacccaaagtgctgagatgacaggcgtgagccaccgtgcccggcTAAttttgtatttttagtggagatggggtttctccatgttgtccaggctggtctcgaactcctgacctcatgacccgctcgcctcggccacccaaagtgctgagatgacaggcgtgagccaccgcgcccggctaattttgtatttttagtggagacggggtttctccatgttggccaggctggtctcgaactcctgacctcatgacccgctcgcctcggccacccaaagtgctgggatgacaggcgtgagccaccgcgcccggccACAGTTACACACGGACACAGAGCCAAGG
s gorGor5.CYUI01015925v1   152587 370 +    417917 ccaggctggtctcgaactcctgacctcatgatccgctcacctcggccacccaaagtgctgagattacaggcatgagccaccgcgcccg-ctaattttgtatttttagtgg-gatggggtttttccacgttg-gcagg-tggtctcgaactcctgacc--ATG-TCCGCTCgcctcggccacc-aaagtgctgagatta-aggcg-gagcc-ccgcgcc-ggctgattttgtatttttagtggagatggggtttctccatgttggccaggctggtctcgaactcctgacctcatgatccgctcgcctcggccacccaaagtgctgggatgacaggcgtgagccaccgggcc-ggccACAGTTACACACGGACACAGAGCCAAGG
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   200827 6753 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=22116.000000
s hg38.chrX_KI270880v1_alt  83453 97 +    284869 GGCCACCTGAACTCCCTCTCAGCCCTGGAATGAAAGACCATAGgaccaggcgcggcggctcatgcccacaatcccagcacagtgggaggccgaggca
s gorGor5.CYUI01015925v1   152957 97 +    417917 GGCCACCTGAACTCCCTCTCAGCCCTGGATTGAAAGACCATAGgaccaggtgtggcagctcatgcccaccatcccagcactgtgggaggccgaggca
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   207580 97 +   1230721 GGCCACCTGCACTGCCTCTCAGCCCTGGAAGGAAAGACCACAGggccgcgtgcggcggctcacgcctgacgtcccagcaccgtgggaggccgaggca
i colAng1.NW_012115411v1   I 6753 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         155797 3401 +    465904 I
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=36951.000000
s hg38.chrX_KI270880v1_alt  83550 100 +    284869 ggaggatcgcttgaggcctggagttcgagaccaacctgggccacctagcaagaccctgcccctacc-aaaa--aATGTAAACAATAAAAATAAATGAAAAGCA
s gorGor5.CYUI01015925v1   153054 100 +    417917 ggaggatcgcttgaggcctggagttcgagagcaacctgggccacctagcaagaccctgcccctacc-aaaa--aATGTAAACAATAAAAATAAATGAAAAGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   207677 101 +   1230721 ggaggatcgctcgaggcctggagctcggggccgaccggggccacctcgcaagacccagtccctaccaaaaa--aatgtcaaaaATAAAAATAAATGAAAACCA
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         159198  98 +    465904 gggggatccctgcaggccgggagtgcaagaccagcctgggccacccggcaggaccctgtccttaca-aaagacaatataaaaaataAAAATAAAGGGAA----
i saiBol1.JH378345         I 3401 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e otoGar3.GL873584         129368 3848 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=24549.000000
s hg38.chrX_KI270880v1_alt  83650 68 +    284869 ACAATAAAAGAAGGTAGACCACGTGTTGCGGGACCTTCCTCTCCTGGGGCGCCTTGTGGGTGTGGGCA
s gorGor5.CYUI01015925v1   153154 67 +    417917 ACAATAAAAGAAGGTAGACCACGTGTCACGGGAC-TTCCTCTCCTGGGGTGCCTTGTGGGTGTGGGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   207778 68 +   1230721 ACCCTAAAAGAAGGTAGACCACGTGTCGCGGGGCCGTCCTCTCCTGGGGCCCCTTGTGGGTGTGGGCA
i colAng1.NW_012115411v1   C 0 I 1905
s saiBol1.JH378345         159296 53 +    465904 ----TAAAACAGG-----------GTCGTAGGGCCTTTGTCTCCTGGGACGCGTCGCGGGTGAGGGCG
i saiBol1.JH378345         C 0 I 40
s otoGar3.GL873584         133216 68 +  11138919 ACAGAGGAAGGCGGTCAACCCGAAGCTGCCTGGCCCACCTCCCTGTGGATGCCTCATGCTTCTGGGCA
i otoGar3.GL873584         I 3848 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=52641.000000
s hg38.chrX_KI270880v1_alt  83718 178 +    284869 GGGGAGGCTATTCCCGGCC-------------------TTTCACG-TTCTAAAAACATCCCGTGGAAAGTGTACAGACGGCATCTGTGGGGCTCACCTCTGTGCCCGTCACTCGATCGTGGGCCTGCTGAGTGGCGCTATTTTTGGAGGGCAGCTGGGGGAGGGAGGAATTGGTACGATTTTGCTATTATAGGAAGGA
s gorGor5.CYUI01015925v1   153221 178 +    417917 GGAGACACTATTCCCAGCC-------------------TTTCACA-TTCTAGAAACATCCCCTGGAAAGTGTACAGACGGCATCTGTGGGGCTCACCTCTGTGGCCGTCACTCGATCGCGGGCCTGCTGAGTGGTGCTATTTTTGGAGGGCAGCTGGGGGAGGGAGGAATTGGTACAATTTTGCTATTATAGGAAGGA
i gorGor5.CYUI01015925v1   C 0 C 0
s saiBol1.JH378345         159389 177 +    465904 GGCGAGGCTCTTCCTGGCC--------------------TTCACG-CTCTGAAACCGTCCCGGGCAGAGCCTCCAGACGGCCTCTGCGGGACCCAGCTCTGCGGCCGTCACCTGATAGCCCGCGTGCCGAGAGGCTCTATTTTTGGAGTGCAGCTGGAGGAAGCAGGCATGGCTGTGGTTTTGCTATTCCAGGAAAGA
i saiBol1.JH378345         I 40 I 14883
s otoGar3.GL873584         133284 187 +  11138919 GGAGAGGCTATTTCTGGCTGCAGGACAAGTGGACTGGATTTCAGGCCTCCAAAAACATCC----------GTGCAGACGGCACATGT-CCCCTCACCTCTGTGCCCATCACCCAACAGTGGGCTGGTGGAGCGGCTCTATTTTTGGAGAGCAGCTGGGGACAGGATGAATTGGTGTGGTTTTGCTATTTTGGGGAGGA
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=12455.000000
s hg38.chrX_KI270880v1_alt  83896 135 +    284869 AGACTAAGGGATTCCTAGGCTTGCTTACATG--------------Ctttttttttttttgagacggag----------------------tctcgctgtgtcgcccagg-------------ctggagagcagt-----------------------ggccccatctcatctgactgcaa---gctc--------------tgcctcccgggttcacgccattc
s gorGor5.CYUI01015925v1   153399 149 +    417917 AGACTAAGGGATTCCTAGGCTTGCTTACATGttttttttttttttttttttttttttttgagacagag----------------------tcttgctctgtcgcccagg-------------ctggagagcagt-----------------------ggccccatctcatctcactgcaa---gctc--------------tgcctcccgggttcacgccattc
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         133471 224 +  11138919 AGATTAAGGCATTCCTGGCCTTGCTAGCATTCTTCTTTTTTTTAGTCCTGCTCCACTTGGAGAAGGAAGAGTGTGTAAAACCCCCCGATTTCAGGGTTTAAGGTCCAGGATGGAATAACTGTCTGAAGGACGGTTTGTTTTCCTGTGACAGAAGATGGGCCATTGCCCTACTGATTGCAAAGGGCTCCCTACACCTTCTGGTGCCTCCCAAGCTCTCCCGATCT
i otoGar3.GL873584         C 0 I 333
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=26585.000000
s hg38.chrX_KI270880v1_alt  84031 327 +    284869 tccagcctcagcctcctagagagtagctggggctacaggcgcccgccaccaacacccggctaattttttgtatgtttagtagagacagggggtctcaccgtgttagcccggatggtctcaagatctcctgaacttgtgatccgcccgcctcggcctcccaaagtgctgggattagaggcgtgagccaccgcg-cccggccGCCTACATGATTGTTATAAGCCATGACCCTTTCGGCATATGAGAGAGTGTGTGAATCCTGTCAGTTCAGGGTTAGAAGCCCAGGATGCATGATTGAGGTGGCTGTCTGCAATAGCAACTTGCTTTCTC
s gorGor5.CYUI01015925v1   153548 322 +    417917 tcctgcctcagcctcctggagagtagctggggctacaggcgcccgccacc-acgcccggctaattttttgtatgtttagtagagac--ggggtctcaccatgttagccaggatggtctcaagatctactgaacttgtgatccgcccgcctcggcctcccgaagtgctgggattagaggtgtgagccaccgcgccccggccGCTTACATGATTGTTTTAGGCTGT---CCTTTCGGCATATGAGAGAGTGTGGGAATCCTGTCAGTTCAGGGTTAGAAGCCCAGGATTCATGATTGAGGTGGCTGTCTGCAATAGCAACTTGCTTTCTC
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         133695 333 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=55340.000000
s hg38.chrX_KI270880v1_alt  84358 331 +    284869 ATGGCAGAAAATTAGAttttttttttttctttt---tgagacagactctttctctgtcactcagactggagtgcaatggcacgatcacagctcactgcagcctcaaactcctgggctccagcaatcctcccacctcagcctcctgagcaccagggaccacaggcgtg--------------caccaccatacccagctaatttttaaatttctttagaaatgagatctcgctatgttgcccaggctggtctcaaactcctgggcttaagccatcctcctgcttcagcctcccaaagtgctgggattacaggcgtgagccactgcacctgg-ccCATGTATGCATTTT--AA
s gorGor5.CYUI01015925v1   153870 332 +    417917 ATGGCAGAAAATTAGA-tttttttttttctttt---tgagacagactctttctctgtcactcagactggagtgcaatggcacgatcacagctcactgcagcctcaaactcctgggctccagcaatcctcccacctcagcctcctgagcaccagggaccacaggcgtg--------------cgcccccatacccagctaatttttaaatttctttagaaatgagatctcgctatgttgcccaggctggtctcaaactcctgggcttaagcgatcctcctgcttcagcctcccaaagtgctgggattacaggcgtgagccactgcacctgg-ccCATGTATGTGTTTTTAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         134028 338 +  11138919 ATGGAAGAGAATCATGTTAtttacttatttatttaatgagacagagtctcactctgtcaccctgggtagagttccatggt---gtcacagctcacagcaaactcagactcctgggctcaagccattctcct------gcttcctaagttgctgcaactataggtgcacacctatacccacccaccacaacaccaggatagttttttacttttagtagagatgagttgtccctc--ttgctcaggtgggtctcaaactcctgagctcaagagatcctcctgcttcagtctcccagagtgctggggttatgggtgtgagccaccatgttcagccCCATATTTTTGTTTT--AA
i otoGar3.GL873584         I 333 I 1540
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=64331.000000
s hg38.chrX_KI270880v1_alt  84689 755 +    284869 TATATATTAAAgagacggagtttcgctcttgtcacccaggctggagggcagtggtgcgatcttggctcactgcaacctccgcctcccaggttcaagccattctcctgcctcagtctcccaagtagctgggattacaggtgctcaccaccatgtcTTCTATCCTTAAAGAACGGGGAAATTTGGGTGCAGAtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tatgtgtgtgtgtgtatatatctgtgtgtgtgtatatatgtgtgtgtCTGTAtatatatgtgtg----------------------tatgtgtgtatatatataaaatacaatataaattttttaaaaaatata-gtttataaaattatgttttat-aaaaaattttaaaatatagaaacaaaattatagtttgtaaaaacatttttacacatatgacaatatgtaaaattgtattttataaaaagttttaaaatatgaaaatatataaaattacattttataaaaacataagcccttCACCCTTCTTCTGTATTAAATTAGCAACCTGCAAAGCTGACCTCCGGGAGTCTCAGAGAGGCTGGCTTGTTTAATGGAACCGTGTAttcttttttgtttgtttgttttttgaggcggagtcccgctctgtcgcctgggctggagtgcagtggtgcaatctgggctcactgcaagctccgcctcccgggttcacgccatcctcctgcctcagcctcccgagtagctgggatgacaggtgcccgccaccacgcccggctcatttttt
s gorGor5.CYUI01015925v1   154202 794 +    417917 TATATATTAAAgagatggagtttcgctcttgtcacccaggctggagtgcagtggtgccatcttggctcactgcaacctccgcctcccaggttcaagccattctcctgcctcagcctcccaagtagctgggattacaggtgctcaccaccatgtcTTCTATCCTTAAAGAACGGGAAAATTTGGGTGCAGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtatatatatgtgtgtgtgtgtATATATATGTGTGTGTGTATATATATGTGTGTCTGTATATATATGTGTGTCTGTATGTATATGTGTGTATATGTGTGTGTATATATATAAAATACAATATAAATTTCTTAAAAAATATAGGTTTATAAAA-TATGTTTTATAAAAAAATTTTAAAATATAGAAACAAAATTATAGTTTGTAAAAACATTTTTACACATATGACAATATGTAAAATTGTATTTTATAAAAAGTTTTAAAATATGAAAATATATAAAATTATATTTTGTAAAAACATAAGCCCTTCACCCTTCTTCTGTATTAAATTAGCATCCTGCAAAGCTGACCTCCGGGAGTCTCAGAGAGGCTGGCTTGTTTAATGGAACCGTGTAttcttttttgtttgtttgttttttgaggcggagtcccgctgtgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaacctccacctcccgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctcatttttt
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=0.000000
s hg38.chrX_KI270880v1_alt  85444 28 +    284869 gtagttttggtagagacggggtttcact
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=3768.000000
s hg38.chrX_KI270880v1_alt  85472 45 +    284869 gtgttacccaggatggtctcgatctcctgaactcgtgatccaccc
s nomLeu3.chrX              39252 45 + 141252148 gtgttagccaggatggtctcgatctcctgacctcgtgatccgccc
i nomLeu3.chrX             N 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             211041 456 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=162866.000000
s hg38.chrX_KI270880v1_alt  85517 751 +    284869 gcctcggcctcccatagtgctgggatgacaggcgtgagccaccgtgcccggccAGAAGAAAGCCTTTATGGAGAAGAATGTTGACACTATGACAGCGAATTGTGTGCCTGCTGGCTGTCTGGGTTTAACCCACCCCTCACAGCCCCACCCAgcccccaccaatcagaacgtgagccgccgaggacaggaaggtttctccttggtctgtttctctcactacagggaccccgggaaatagaatggcacctgtcacacggtagCTTTCAGACAGACACattcagagtccagaatgttcaccattacaccatggaacTGTCTTCACGGTAGCTTCCTAAT-ACATGTTTGTTCCCTCGATAAATGAAACAA---gggcgtcggggctccagcctgtcatcccagcactttgggaagtagaggtgggtaggttccttgagttcaggagtctgagaccagcctggacaacacagcaagatccagtctctgc------aaaaaaaaaaaaaatacactaaattagccgggcatggtggcacctgcctgtaggcccagctacaaggagataggaggatcacttTAAATGttttgagtcaccaacttggaaacattctttttgtagaatctccaaagtgacgtttctgagtccatcgaggcttgtaaggaaacatagaatatccaatgataaaagctagaaacaagctatctatgaaaatgctt--tgatgtgtgAC----TGAGTATGTGTGTGTGAGGGTATGTGTGAGTGCGT
s panTro5.chrX             211497 753 + 155549662 gcctcgacctcccaaagtgctgggattacaggcgtgagccaccgcgcctggccAGAAGAAAGATTTTATGGAGAAGAATGTTGACATTATGACAGCGAATTGTGTGCCTGCTGGCTGTCTGGGTTTAACCCACCCATCACAGCCCCATCCAgcccccaccaatcagaacgtaagccgccgaggacaggaaggtttctccttggtctgtttctctcactacagggaccccgggaaatagaatggcacctgtcacacagtagCTTTCAGACACACACattcagagtccagaatgttcaccattacaccgtggaacTATCTTCACGGTAGCTTCCTAAT-ACATGTTTGTTCCCTCGATCAATGAAACAA---gggcgttgggactccagcctgtcatcccagcactttgggaagtagaggtgggtaggttccttgagttcaggagtttgagaccagcctggacaacacagcaagatcccgtctctgccaaaaaaaaaaaaaaaaaaaaacactaaattagccgggcatggtggcacctgcctgtaggcccagctacaaggagatgggaggatcacttTAAATGtttcaagtcaccaacttggaaacattctttttgtagaatctccaaagtgacgtttctgagtccaccgaggcttgtaaggaaaaatagaatatccaatgataaaagctagaaacaagctatctatgaaaatgctt--tgATGTGTGAC--------TATGTGTGTGTGAGGGTACGTGTGAGTGCGT
i panTro5.chrX             I 456 C 0
s nomLeu3.chrX              39297 687 + 141252148 gcctcggcctcccaaagtgctgggatgacaggcgtgagcccccgcgcccggccAGAAGAAAGGCTTTAT-GAGAAGAATGTTGACATCATGACAGCAAATTGTGTGCCTGCTGGCTGTCTGGGTTTAACCCACCCATCATAGCACCGTGCAGCCC---CCCATCAGAACGTAAGCTGCCGAGGAGA-------------------------------------------------------------TGGCCCACAGTAGCCTTC-------CCgattcagagtccagaatgttcaccattacaccatggaaccGTCTTCACGGTAGCTTCCTAATAACGTGTTTTTTCCATCGATAAATGAATCAggctgggcatgggggttccagcctgtcatctcagcactttgggaagtggaggtgggtagattccttgatttcaggagtttgagaccagcctgcacaacacagcaggatcccgtctctac--------aaaaaaaaaaaataccgtaaactagctgggcatggtggcacctgcctgtaggtccaactacaaggagatgggaggatcacttTAAATGttttgaatcaccagcttggaaacattctttttgtgcgatctccaaagtgacatttctgagcccgttgaggcttgtaatgaaaaatagaatatccaatgataaaagctagaaacaagctatctatgaaaatgctttgtgatgtgtgACTGTATGAGTATGTGTGTGTGAGGGTACGTGTGAGTGCGT
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=6471.000000
s hg38.chrX_KI270880v1_alt  86268 146 +    284869 GAGT--GTGAACGTATGAGTA------TGTGTG--------TGTGTGTGAGGGTGTGTGTGTGAGGGTATGTGTGTGTGATTCAGCATTTGGC--------TCTGTGAGGGTACGTGTGAGTG------------------------------------------------TGAGCACGTGGCTATTTGTGTGTGTGTGAGGGTATGTGTGAGTGCGT
s nomLeu3.chrX              39984 218 + 141252148 GAGTGGGTGAATGTATGAGCACGTGGCTGTGTGTGTGCACCTGTGTGTGTGAACGTGCGTGTGAGCACATGAGTGCGTGAATCAGCATTTGGCTGTGTATGTGTGTGAGGGTACGTGTGAGTGCGTGTGTGATCGTATGAGCACGTGGCTGTGTGTGTGTGAGTGCGTGAATGAGCACGTGGCTGTGTGCATGTGTGTGAGGGTACATGTGAGTGCAC
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             212250   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=1992.000000
s hg38.chrX_KI270880v1_alt  86414 7 +    284869 GTGTGAT
s panTro5.chrX             212250 7 + 155549662 GTGTGAT
i panTro5.chrX             C 0 C 0
s nomLeu3.chrX              40202 7 + 141252148 GTGTGAT
i nomLeu3.chrX             C 0 I 1572
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996 0 +    417917 C

a score=4678.000000
s hg38.chrX_KI270880v1_alt  86421 18 +    284869 TGAGCACGTGACTGTATG
s panTro5.chrX             212257 18 + 155549662 TGAGCACGTGGCTGTATG
i panTro5.chrX             C 0 C 0
s nomLeu3.chrX              41781 18 + 141252148 TGAGCACGTGGCTGTGTG
i nomLeu3.chrX             I 1572 I 2094
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=7807.000000
s hg38.chrX_KI270880v1_alt  86439 33 +    284869 TGTGT--GCATGTGTGTGAGGGTACGTGTGAGTGC
s panTro5.chrX             212275 35 + 155549662 TGTGTGCGCATGTGTGTGAGGGTGTGTGTGAGTGC
i panTro5.chrX             C 0 C 0
s nomLeu3.chrX              43893 33 + 141252148 TGTGT--GCATGTGTGTGAGGGTACATGTGAGTGC
i nomLeu3.chrX             I 2094 I 574
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=884.000000
s hg38.chrX_KI270880v1_alt  86472 4 +    284869 GTGA
s panTro5.chrX             212310 4 + 155549662 ATGA
i panTro5.chrX             C 0 I 55
s nomLeu3.chrX              44500 4 + 141252148 GTGA
i nomLeu3.chrX             I 574 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996 0 +    417917 C

a score=873.000000
s hg38.chrX_KI270880v1_alt  86476 9 +    284869 GCCTGTGAC
s nomLeu3.chrX              44504 9 + 141252148 GCCTGTGAC
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             212314 55 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996 0 +    417917 C

a score=7435.000000
s hg38.chrX_KI270880v1_alt  86485 30 +    284869 ----TGAGCACGTGGTTCTGTGTGTGCGTGTGTG
s panTro5.chrX             212369 30 + 155549662 ----TGAGCACGTGGTTGTGTGTGTGTGTGTGTG
i panTro5.chrX             I 55 I 1612
s nomLeu3.chrX              44513 34 + 141252148 TGTATGAGCACGTGATTCTGTGTGTGCGTGTGTG
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=5869.000000
s hg38.chrX_KI270880v1_alt  86515 70 +    284869 TCCTTGCAGCTGGCAGGG-GGTGTTGCCCAGGGAAGAACTGGGGGAAGCAGCTTTCTCCCCACTCAGGAGA
s nomLeu3.chrX              44547 71 + 141252148 TCCTTGCAGCTGGCAGGAAGGGGTTGCCCAGGGAAGAACTGGGGGAAGCAGCTTTCCCCCCACTCAGGAGA
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         134366 1540 +  11138919 I
e panTro5.chrX             212399 1612 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=4189.000000
s hg38.chrX_KI270880v1_alt  86585 74 +    284869 GGGCCCGCACAGGGGAGCGGCCACGCAGGCCGCGCAGGAGCTT-----GTCC---TCCTGACTTGGAGTCCCTGGCAGGAAC
s nomLeu3.chrX              44618 61 + 141252148 GGGCCCGCACAGGTGAGCACCCACCCAGGTCGTGCAGAAGCTT-----GGCC---TCCTGACTTGGA-------------AC
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         135906 75 +  11138919 gggtcctcatatgagagggaggacagagg-------ggggctccctgggtcccttttCTTTCTTGGGGTCTCTGGCAGATGC
i otoGar3.GL873584         I 1540 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             212399 1612 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=18554.000000
s hg38.chrX_KI270880v1_alt  86659 79 +    284869 CTGATGCTGGAGTGAAGAATATGCCT-CGTTTAGGGGG-CACCGTGGTTCCCACT--TCCCAGCTGAGGAAGCCCCTTGGAGA
s panTro5.chrX             214011 80 + 155549662 CTGATGCTGGAGTGAGATATATGCCTTCGTTTAGGGGG-CACCGC--TTCCCACTGTTCCCAGCTGAGGAAGCCCCTTGGAGA
i panTro5.chrX             I 1612 I 58
s nomLeu3.chrX              44679 80 + 141252148 CTGATGCTGGAGTGAAGAATATGCCT-CATTTAGGGGGACACCCTCCTTCCCACT--TCCCAGGTGAGGAAGCCCCTCGGAGA
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         135981 73 +  11138919 CCGATGCATGCATGG-----ATGCAAGCTCCTGGGTGGGCACCGTCATCTCCC----TCACAGGTGA-GAAGCCCCATGGAGA
i otoGar3.GL873584         C 0 I 21
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=5682.000000
s hg38.chrX_KI270880v1_alt  86738 34 +    284869 CAGTGGGGCTGAGATTCAGAGCCCGCCCTGGGAC
s nomLeu3.chrX              44759 34 + 141252148 AGGTGGGACTGAGATTCAGAGCCCGCCCTGGGAC
i nomLeu3.chrX             C 0 I 2
s otoGar3.GL873584         136075 34 +  11138919 CTGTGGAGCTGAGGTTCCAAGCTAGGCCTGTGGC
i otoGar3.GL873584         I 21 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             214091 58 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=8498.000000
s hg38.chrX_KI270880v1_alt  86772 23 +    284869 CCACAGTCGGATCGCTGCTCTCC
s panTro5.chrX             214149 23 + 155549662 CCACAGTCGGATCGCTGCTCTCC
i panTro5.chrX             I 58 I 25
s nomLeu3.chrX              44795 23 + 141252148 ACACAGTGGGATCGCTGCTCTCC
i nomLeu3.chrX             I 2 C 0
s otoGar3.GL873584         136109 22 +  11138919 CCCCAGCAGG-TGGCTGCTCTCC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=2686.000000
s hg38.chrX_KI270880v1_alt  86795 22 +    284869 CTAGGAGACCTCCTGGGCTCCC
s nomLeu3.chrX              44818 22 + 141252148 TTATGAGTCCTCCTGAACTCCC
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         136131 22 +  11138919 CTCTTACACCTCTCAAACTCCC
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             214172 25 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=23928.000000
s hg38.chrX_KI270880v1_alt  86817 145 +    284869 ATTTTCCCTTCTCTG-CCACAGTTGCCAC---CTGCGTGCTGGGGCGGCAAAGCG-TAAAGGCTGGCAGGTCCTTCCTCAACCCCGGA---AGGTGGGAACCACAGCACGGTCATTGCCG-GCGTAAAACCCCAGGGCCGTCAGGTGCTGTGTG
s panTro5.chrX             214197 145 + 155549662 ATTTCCCCTTCTCTG-CCACAGTTGCCACACTCTGCGTGCTG----CGCAAAGCGTTAAAGGCTGG-AGGTCC-TCCTGAACCCTGAATGCGGCTGGGAACCACAGCACGGTCATTGTCACGCGTAAA--CCCAGGGCCGTCAGGTGCTGTGTG
i panTro5.chrX             I 25 I 81
s nomLeu3.chrX              44840 145 + 141252148 ATTTTCCCTTCTCTG-GAACGGTTGCCAC---CTGCGTGCTGGGGCGGCAAAGCA-TAAAGGCCGGCAGGTGCTTCCTGAACCCAGGA---AGGTGGGAACCACACCACGGTCATTGCCG-GAGTAAAACCCCAGGGCCGTCAGGTGCTGTGTG
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         136153 104 +  11138919 --AGTAGCCTCTCTGCCCAAAGTGACCAC--------TGCCCTGGCAGGGCACCA-GAAAGGCTAA-------------------------GGCTGGAGACAA---------AATTGCCA----TAAAA-TGTAGGGTCAGAGGCTGCTCTGTG
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=10019.000000
s hg38.chrX_KI270880v1_alt  86962 155 +    284869 CAGAT-TGAACAGCTTCATGCTTCTACGCTCACCTGCAACGG-----------AATAGGTCGGCCCCTGGGACCACATTGTGAAATGCAATCTGAGC--ATTCTCTGGGCAATGACGGTGCAACCTGGACAGGCTC-GGGGGGTCCCCAGCGCAGAC----------------ATTGAACCTCCTC
s nomLeu3.chrX              44985 161 + 141252148 CAAAG-TGAACAGTTTCATGCTTCTACCCTCACCTGCAAAGG--------AATAATAGGTCAGCTCCTGGGACCACGTTGTAAAATGCAATCTGAGCATATTCTCTGGGGAATTACGGTGCAACCTGGACAGGCTCGGGGGGGTCCCCAGCGTGGAC----------------ACTGAACCTCCTC
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         136257 175 +  11138919 CAAATATGGGTAGGTTCGTGGTGGCACAGCCACCTGTGAGGGGGGTGCCCATGTGGGGGTGAGTGCCCATGTGCACAGCAAACAGCATAGCCCAAGC--ATTCTCAGGCCAG----GAGGCCATACAGTGGGGCT--GAGAGGCTCCCGGCTGACACAGCCAAGGCCTTTGTTATTAAAGCTC---
i otoGar3.GL873584         C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             214342  81 + 155549662 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=30752.000000
s hg38.chrX_KI270880v1_alt  87117 97 +    284869 TTTGTCATTTTCCTAAAGGTTGGAAGTAGAAA-TCGTCCTAAATCATAGCCACGCGATTTCTCTCCGGAAAGGACGACATTTGGGTCATGTAGGGTTC
s panTro5.chrX             214423 94 + 155549662 TTTGTCATTTCCATAAAG-TTGGAAGTAGAAAATCGTCCTAAATCATAGC-ACGCG-TTTCTCTCCGAAAAGGACAAC-TTTGGGTAATGTAGGGTTC
i panTro5.chrX             I 81 C 0
s nomLeu3.chrX              45146 97 + 141252148 TTTGTCATTTTCCTAAAGGTTGGAAGTAGAAA-TCATCCTAAATCATAGCCACGCAATTTCTCTCTGGAAAGGATAACGTTTGGGTAATGCAAGGTTC
i nomLeu3.chrX             C 0 C 0
s otoGar3.GL873584         136432 95 +  11138919 TTTGTTATTTTCCTGCAGGTTGGAA--ACAAG-TTGTGCTAAATTAGAGCCACGCAGCTTCTCTCCACTGATGAGAACATTTGGATAAGGCAGGATTC
i otoGar3.GL873584         C 0 I 6
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996  0 +    417917 C

a score=17273.000000
s hg38.chrX_KI270880v1_alt  87214 108 +    284869 ACGTCTGCAAACTCTGAACTTCtttttttttcttttcttttctttttcttttttttttttttttttttttttttgagatggagtct-tgcgctgtt--gcccaggctggag
s panTro5.chrX             214517  92 + 155549662 ACGTCTGCAATCTCTGAAGTTATTTtttctttttttcttttctttttttttttttt-------------------agatggagtctatgtgctgttttgcccaggctggag
i panTro5.chrX             C 0 C 0
s nomLeu3.chrX              45243  89 + 141252148 ACATCTGCAAACTCTGAACTTCTTTtttct--ttttcttttcttttcttttttttt-----------------tgagatggagtct-tgcgctgtt--gcccaggctggag
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         136527   6 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=14583.000000
s hg38.chrX_KI270880v1_alt  87322 170 +    284869 tgcagtggtacgatctcaggtcaccacaacctccgcctctctggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccatcatgcccagctaattattattattattattttttgagacggcgtctctctccgtctcccaggctggaa
s panTro5.chrX             214609 168 + 155549662 tgcagtggtacgatctcaggtcacca-aacctccgcctccc-agttcaagcggttctcctgcctcagcctcccgagtagctgggattacaggcacctgccatcatgcccggctaattattattattattattttttgagacggcgtctctctctgtctcccaggctggaa
i panTro5.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e nomLeu3.chrX              45332   0 + 141252148 C
e otoGar3.GL873584         136527   6 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=30850.000000
s hg38.chrX_KI270880v1_alt  87492 119 +    284869 tgcagtggcacgatctcggctcaccgcaacctccacctcccagttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgtgcaccatcatgcctggctaattttt
s panTro5.chrX             214777 119 + 155549662 tgcagcggcgtgatctcagctcaccgcaacctccacctcccagttcaagcggttctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccatcatgcctggctaattttt
i panTro5.chrX             C 0 C 0
s nomLeu3.chrX              45332 119 + 141252148 tgcagtgtcatgacctcggctcactgcaacctccacctcccagttcaggcgattttcctgcctcagcctcccgagtagctgggattacaggcgtgcaccatcacacctggctaattttt
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         136527   6 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   154996   0 +    417917 C

a score=64741.000000
s hg38.chrX_KI270880v1_alt  87611 127 +    284869 gtatttttagtagagacgggggtttcaccttgttggccaggctggtctcgaactcctgacctcaggggatgcacccacctcagcctcccaaagtgctgggattataggcataagccaccgcacccgg
s panTro5.chrX             214896 127 + 155549662 gtatttttagtagagatgggggtttcaccttgttggccaggctggtctcgacctcctgacctcaggtgattcacccacctcagcctcccaaagtgctgggattataggcataagccaccgcacccgg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   154996 127 +    417917 gtatttttagtagagacgggggtttcaccttgttggccaggctggtctcgaactcctgacctcaggtgatgcacccacctcggtgtcccaaagtgctgggattataggcataagccaccgcacccgg
i gorGor5.CYUI01015925v1   C 0 C 0
s nomLeu3.chrX              45451 126 + 141252148 gtatttttagtagagat-ggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcatgagccactgcacccgg
i nomLeu3.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         136527   6 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=439842.000000
s hg38.chrX_KI270880v1_alt  87738 667 +    284869 ccACCCCTGCACTTCTTTGTGTCCTTTCTTTCAAGGAAAGGACACAATGCTGGAATTAT--------------------------TAAATAAGTCCTCTTTGAGATAAACGGGAATGGTTCGTGTCTTGACAGTGAGCATTTGCAGTAGAAATCACGCACACTCAGCAGAGGGCTGCACAAGGCCAGCCGTGCTCCACCTGCCCCCCTCA---AAAATCGGCCTCCGCACCTGCTGCGGCCATTTCATTACATCTCAAAACAACGTCAACTTATTTAATAAATAGGAGAA-TTTTTAAATCAAGTCCCGAGGCAGGATGTATAAACTTTAGTATTGATTATGCGTCCCTAAAAGCGCTCTCAGTAAAGGGACTTTGCTTCCTTTTCCTCAGGTTCCTATGAAGTCGTTTAATCCGTCTAACTCTTATTTTATGTTGTTTTCCCCGTTTTTATTACTTTATATGACAGTACATCTTTGTAGCCACAAACTCAATAGCATAATTGTG---------TGTTTTTTTTTCCCTGAGACAACAATGTGCTTTTTGTTCGAGGAGGTAATAATTCTTGACAA-----AATCTGTTTTAAT--------GTCGTACCGAAAAAAAAAAC---AAACCCCACAAAACCCTTAA-CGGACATTTGTAGTCCCCATTGGATCTAAAACACTGTGATATTGTTTGTGTAATCTGCTTTTAAAGTCACCAAAAGT-
s panTro5.chrX             215023 689 + 155549662 ccACCTCTGCACTTCTTTGTGTCCTTTCTTTCAAGGAAAGGACACAATGCTGGAATTATAGGAAAGGACACGATGTTGGAGTTATTAAATAAGTCCTCTTTGAGATAAACGGGAATGGTTCGTGTCTTGACAGTGAGCATTTGCAGTAGAAATTACGCACACTCAGCAGAGGGCTGCACAAGGCCAGCCGCGCTCCACCTGCCCCCCTCA---AAAATCGGCCTCCGCACCTGCTGCGGCCATTTCATTACATCTCAAAACAACGTCAACTTATTTAATAAATAGAAGAA-TTTTTAAATCAAGTCCTGAGGCAGGATGTATAAACTTTAGTATTGATTATGCGTCCCTAAAAGCGCTCTCAGTAAAGGGACTTTGCTTCCTTTTCCTCAGGTTCCTATGAAGTCGTTTAATCCGTCTAACTCTTATTTTATGTTGTTTTCCCCGTTTTTATTACTTTATATGACAGTATATCTTTGTAGCCACAAACTGAATAGCATAATTGTG---------TTTTTTTTTTTCCCTGAGCCAACAATGTGCTTTTTGTTCGAGGAGGTAATAATTCTTGACAA-----AATCTGTTTTAAC--------GTCGTACCGAAAAAAA-------AAAACCCACAAAACCCTTAA-CGGACATTTGTAGTCCCCATTTGATCTAAAACACTGTGATATTGTTTGTGTAATCTGCTTTTAAAGTCACCAAAAGT-
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   155123 694 +    417917 ccACTTCTGCACTTCTGTGTGTCCTTTCTTTCAAGGAAAGGACACAATGCTGGAATTATAGGAAAGGACACGATGTTGGAGTTATTAAATAAGTCCTCTTTGAGATAAACGGGAATGGTTCGTGTCTTGACAGTGAGCATTTGCAGTAGAAATCACGCACACTCAGCAGAGGGCTGCACAAGGCCAGCCGTGCTCCACCTGCCCCCCTCA---AAAATCGGCCTCCACACCTGCTGCGGCCATTTCATTACATCTCAAAACAACGTCAACTTATTTAATAAATAGAAGAA-TTTTTAAATCAAGTCCTGAGGCAGGATGTATAAACTTTAGTATTGATTATGCATCCCTAAAAGCGCTCTCAGTAAAGGGACTTTGCTTCCTTTTCCTCAGGTTCCTATGAAGTCGTTTAATCCGTCTAACTCTTATTTTATGTTGTTTTCCCCGTTTTTATTACTTTATATGACAGTATATCTTTGTAGCCACAAACTGAATAGCATAATTGTG-------TTTTTTTTTTTTTCCCTGAGACAACAATGTGCTTTTTGTTCGAGGAGGTAATAATTCTTGACAA-----AATCTGTTTTAAC--------GTCGTACCGAAAAAAAAAA----AAAACCCACAAAACCCTTAA-CGGACATTTGTAGTCCCCATTTGATCTAAAACACTGTGATATTGTTTGTGTAATCTGCTTTTAAAGTCACCAAAAGT-
i gorGor5.CYUI01015925v1   C 0 C 0
s nomLeu3.chrX              45577 669 + 141252148 ccACCTCTGCACTTGTGTATGTCCTTTCTTTCAAGGAAAGGACACGATAGTGGAATTAT-------------------------TAAAATAAGTCATCTTTGAGATAAACTGGAATCATCCGTGTCTTGACAATCAGCATTTGCAGTAGAGATCATGCACAGTCAGCAGAGGGCTGCACAATGCCAGCTGTGCT--------GCCCCCCA---AAAAACGGCCTCCACACCTGCTGCGGCCATTTCATTACATCTCAAAACAACGTCAACTTATTTAATAAATAGAAGAA-TTTTTAAATCAAGTGCTGAGACAGGATGTATAAGCTTTAGTATTGATTATGCGTCCTTAAAAGCACTCTCAGTAAAAGCAGCTTGCTTCCTTTTTCTCAGGTTCTTATGAGGTCATTTAATCTGTCTAACTCTTATTTTATGTCGTTCTCCCCGTTTTTATTACTTTATATGACAGTACATCTTTGTAGCCACAAACTGAATAGCGTAATTGTGTTT---TTTTTCTTTTTTTTTCCTGAGACAACAATATGCTTTTTGTTCGAGGAGGTAATAATTCTTGACAA-----AATCTGTTTTAAT--------GTCGTACCAGAAAAAAAAATAAAAAACCCCACAAAACCCTTAA-CGGACATTTGTAGTCCCCATTTGATCTAAAACACTGTGATATTGTTTGTGTAATCTGCTTTTAAAGTCACCAAAAGT-
i nomLeu3.chrX             C 0 N 0
s otoGar3.GL873584         136533 663 +  11138919 CCACACCTGGGTTTCTCTGTGATCTTTCTTCGAGCGAGAGGGAGTGGTTGTGG---------------------------------CAGTAAGTCCTCCCCGAGAGAAAGGTGGCTTGCTC---------CAGTG-GCCCTGCCAG-------------CACTTGAGGAAGGAGTACCCCAGCGCAGCCCCGTGCCGACTCTTCCCCCCAAAGAAAAATGACCCCTGGGCACATGGCAGCTGTTTCATTACTTCTGGAAATAACATAGACTTATTTAATAAATAGAAGAATTTTTTTAATCAAGTCATAAGACAGGATATATAAACTTTATTATTGATTACACGTTCGTAAAAGCTCTCTCAATAAAGTAAAGTTGCTTCCTTCT-CTCAGGTTTCTGTTAGGTAATTTAATCTGTCTAACTCTCACTTTATATTGTTTTTCCT-TTTTTATTACTTTATATTACAGTACATCTTTGTAGCCACAAATTGAATAGCATAATTGCGGGTGGGTTCTTTTTTTTTTTCCCTGAGACAAAAATGTGCTTTCTGTTCAAGGAGGTAATAATTCTAGGCAAAAACCAAACTGCTTTAATGGGAAAAAGTTGTACCaaaaaaaaaaaag--aaaagaaaaaaaTCCCTTAACCTGACATTTATGGG-CCTGTTTGATGTAAAACGTTGTGGCAGTGTTTGTGTAATCTGTTTTTAAAGTAACAAAAAAGT
i otoGar3.GL873584         I 6 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=39144.000000
s hg38.chrX_KI270880v1_alt  88405 90 +    284869 GCTTTGTTGTAAATACTCTGTGATAACATTTGCTTTGTTAACGTATTTTAAATGAAATATAGTTATAATTTCCCTCATGACATTTTCATT
s panTro5.chrX             215712 90 + 155549662 GCTTTGTTGTAAATGCTCTGTGATAACATTTGCTTTGTTAATGTATTTTAAATGAAATATAGTTATAATTTCCCTCATGACATTTTCATT
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   155817 90 +    417917 GCTTTGTTGTAAATACTCTGTGATAACATTTGCTTTGTTAACGTATTTTAAATGAAATATAGTTATAATTTCCCTCATGACATTTTCATT
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         137196 87 +  11138919 GCTTTGTTGTAGATAGCCTGTTGTGGCATTTGCTTTGTT-ACATATTTTAAATGAAAAGCACT--TCATTTCCTTCATGACATTTTTATT
i otoGar3.GL873584         C 0 I 1259
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=68463.000000
s hg38.chrX_KI270880v1_alt  88495 324 +    284869 TA---------AATTTAAATGTCATGAGGGAAATTATAATTTAATTTAAAAAACGATTTAAATTTATTtaataaatttaattaataaataataatatataataaatatataataataaataaataatcaaatttgtttaaatttaaatttatttaaatttattcatttatttatttatgtattcatttagatagttatttaaatttatttaaatttattattatttatttttattttatttcattttatttattttattttattttattttagagacagggtctccttctgttgcccagcttggagcgcacctgtgtgatctcggctcactgc
s panTro5.chrX             215802 307 + 155549662 TAAATATATATAATTTAAATGTCATGAGGGaaattataatttaattttaaaaat-atttaaatttatttaataaatttaattaata---aataatgtataataaatatataat----aataaataatcaaatttg------tttaaatttatttaaatttattta-----ttatttatatattcatttagatatttatttaaatttatttaaattta-------ttatttttattttatttcattttatttattttattttattttattttagagacagggtctccttctgttgcccagcttggagtgcacctgtgtgatctcggctcgctgc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   155907 305 +    417917 TAAATATATATAATTTAAATGTCATGAGGGAAATTATAATTTAATTTAAAAAATGATTTAAATTTATTTAATAAATTTAATTAATA---AATAATATATAATAAATATATAAT--------AATAATCAAatttg------tttaaatttatttaaatttattta-ttagttatttagatatttatttagatatttatttaaatttatt----------attatttatttttattttatttcattttatttattttattttattttattttaaagacagggtctccttctgttgcccagcttggagcgcacctgtgtgatttcggctcactgc
i gorGor5.CYUI01015925v1   C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I

a score=282.000000
s hg38.chrX_KI270880v1_alt  88819 3 +    284869 aga
s panTro5.chrX             216109 3 + 155549662 aga
i panTro5.chrX             C 0 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212 0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  88822 194 +    284869 ctccgcctcctgggttcaagagatcctcctgcctcagcGTGCATGCACCACCAAGCCTGGCTCATATTTTTTAGACATTTTAATTTTATTCAGGGTCACAAAGTTACCttttttttttttttttttttttgagacagagtcttgctctgtcgcccaggctggagtgcagaggtgcaatctcggctcgccgcaac
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e panTro5.chrX             216112   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=85241.000000
s hg38.chrX_KI270880v1_alt  89016 965 +    284869 ctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacccgccaccacgcccggctactttttgtatttttagtggagacgcggtttcaccatgttggccaggctggtctcgaactcccgacctcgagtgatcctcccgcctcggcctcccaaagtgctgggatgacaggcatgagccacctcgcccggccACACAGTCACCTTTTTATGTGACGCGCATCGTGTAGATGGAAGAGAAATCAAACGGCACCGTCTGCCGGGGCGGGATTGCAGCCCGTTCCAATGTCTCATTTATTCCCCGGGTGCTGGGAGAGTCTCTGGGATGACAAGACTGATGGTTCCTAACCCAGGCCGGGGCAACGCATGACTTTTGACGCCTCGGAGAAGCCCTTCCTTCCTGGACTGTATTCTGACAGGGAGTGCGTCTCACGCTTTACCCGACGGCGCCCAGAGCGACCTTCATCGCGGCCCACCGGCCAGGGCCGTCTTCTGGATcttcagcggcttgaggaactttctgtccccttctgggttgactgaatttttatcgcgaaaaggcactgcctttgctcaaatgcttttcctgcatttctgcaaatggtcatgtgagtttggccccttagccatgaatacggtgcgtcacattcactggttttcCAGAAaagagctgtatagagagagaatttacacagctgacaatgtgtccgtttaaactcttccaacccgtggctttctgtatgcagagacttgtgccaccatcaccacagtctattttaTTGCTTTACTTATATTTG--tttttttttttttttttgagacagggtctcgctcctgtagccttggactctcaggctcaagggatcctccctcctcagctccccaagtagccgggCAACGTGGCTTCTCCCGAGTAGCTGGGTGACGCTGTTTCTCCAGAGTAG
s panTro5.chrX             216112 966 + 155549662 ctccgcctcccgggttcaagcgatcctcctgtctcagcctcccgagtagctgggattacaggcacccgccaccacgcccggctactttttgtatttttagtggagacgcggtttcaccatgttggccaggctggtctcgaactcccgacctcgagtgatcctcctgcctcggcctcccaaagtgcggggatgacaggcgtgagccaactcgcccggccACACAGTTGCCTTTTTATGTGACGCGCATCATGTAGATGGAAGAGAAATCAAACGGCCCCGTCTACCGGGGTGGGATTGCAGCGTGTTCCCATGTCTCATTTATTCCCTGGGTGCTGGGAGAGTCTCTGGGATGACAAGACTGATGGTTCCTAACCCAGGCCAGGGCAATGCATGACTTTTGACGCCTCGGAGAAGCTCTTCCTTCCTGGACTGTATTCTGACACAGAGTGCGTCTCACGCTTTACCTGACGGCGCCCAGAGCGACATTCATCGCGG-CCACCGGCCAGCGCCGTCTTCTGGATcttcagcggcttgaggaactttctgtccccttctgggttgactgaatttttatagtgaaaaggcactacctttgctcaaatgcttttcctgcatttctgcaaatggtcatgtgagtttggccccttagccatgaatacagtgcgtcacattcactcgttttcCAGAAaagagctgtatagagagataatttacacagctgacaatgtatccgtttaaactcttccaacccgtggctttctgcatgcagagacttgtgccaccatcaccacagtctattttaTTGCTTTATTTATATTTGTTtttttttttttttttttgagacagggtctcgctcctgtagccttggactctcaggctcaagggatcctccctcctcagctccccaagtagccgggCAATGTGGCTTCTCCCGAGTAGCTGGAGGATGCTGTTTCTCTGGAGTAG
i panTro5.chrX             C 0 T 27
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=3419.000000
s hg38.chrX_KI270880v1_alt  89981 54 +    284869 CTGGGTGACGCGGTTCCTCCCGAGTATCTGGGTGACGCGGCTTCTCCAGAGTTT
s panTro5.chrX             217051 54 + 155549662 CTGGAGGATGCTGTTTCTCTGGAGTAGCTGGGTGACGCGGCTTCTCCAGAGTAG
i panTro5.chrX             T 27 T 27
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=2970.000000
s hg38.chrX_KI270880v1_alt  90035 32 +    284869 CTGGGTGACGCGGCTTCTCCAGAGTAGCTGGA
s panTro5.chrX             217078 32 + 155549662 CTGGGTGACGCGGCTTCTCCAGAGTAGCTGGG
i panTro5.chrX             T 27 T 27
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=4094.000000
s hg38.chrX_KI270880v1_alt  90067 53 +    284869 GGATGCTGTTTCTCCCGAGTAGCTGGGTGACGCTGTTTCTCCAGAGTAGCTGG
s panTro5.chrX             217083 53 + 155549662 TGACGCGGCTTCTCCAGAGTAGCTGGGTGACGCTGTTTCCCCAGAGTAGCTGG
i panTro5.chrX             T 27 I 53
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=5274.000000
s hg38.chrX_KI270880v1_alt  90120 81 +    284869 GTGACGCGGTTTCTCCCGAGTATCTGGGTGAGGCGGCTTCTCCAGAGTTTCTGGGTGACGTGGCTTCTCCAGAGTAGCTGG
s panTro5.chrX             217189 80 + 155549662 GTGACGCGGTTCCTCCCGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGG
i panTro5.chrX             I 53 T 133
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  90201 1 +    284869 A
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e panTro5.chrX             217269 133 + 155549662 T
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212 0 +    417917 C

a score=24185.000000
s hg38.chrX_KI270880v1_alt  90202 318 +    284869 GGATGCTGTTTCTCCCGAGTAGCTGGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCTGTTTCTCCCGAGTAGCTGGGTGACGCTGTTTCTCCCGAGTAGCTGGGTGATGTTGTTTCTCCGGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCTGTTTCTCCCGAGTAGCTGGGTGATGTTGTTTCTCCGGAGTAGCT-GGTGACGCTGTTTCTCCGGAGTAGCT-GGTGATGCCGTTTCTCCAGAGTAGCT-GGTGATGCCGTTTCTCCCGAGTAGCTG
s panTro5.chrX             217136 320 + 155549662 TGATGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACACCGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTCTCCCGAGTAGCTGGGTGACGTGGTTTCTCCCAAGTATCTGGGTGACACTGTTTCTCCGGAGTACCTGGGTGATGCCATTTCTCCCGAGTAGCTGGGTGATGCTGTTTCTCCTGAGTAGCTG
i panTro5.chrX             T 133 T 348
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=4478.000000
s hg38.chrX_KI270880v1_alt  90520 52 +    284869 GGTGATGCTGTTTCTCCAGAGTAGCTGGTGACGCTGTTTCTCCAGAGTAGCT
s panTro5.chrX             217108 52 + 155549662 GGTGACGCTGTTTCCCCAGAGTAGCTGGTGATGCCGTTTCTCCAGAGTAGCT
i panTro5.chrX             T 348 I 296
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=2653.000000
s hg38.chrX_KI270880v1_alt  90572 32 +    284869 GGTGACGCTGTTTCTCCCGAGTAGCTGGGTGA
s panTro5.chrX             217456 32 + 155549662 GGTGACGCGGTTTctcccgagtacctgggtga
i panTro5.chrX             I 296 T 349
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=8057.000000
s hg38.chrX_KI270880v1_alt  90604 101 +    284869 AGCCGTTTCTCCAGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGG
s panTro5.chrX             217139 103 + 155549662 TGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGG
i panTro5.chrX             T 349 T 132
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=13453.000000
s hg38.chrX_KI270880v1_alt  90705 165 +    284869 TGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCAGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGCTGGTGACGCTGTTTCTCCCGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCC
s panTro5.chrX             217110 166 + 155549662 TGACGCTGTTTCCCCAGAGTAGCTGGTGATGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGGTGACGCC
i panTro5.chrX             T 132 I 135
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=3535.000000
s hg38.chrX_KI270880v1_alt  90870 52 +    284869 GTTTCTCCCGAGTAGCT-GGTGATGCTGTTTCTCCCGAGTAGCT-GGTGATGCT
s panTro5.chrX             217411 54 + 155549662 ATTTCTCCCGAGTAGCTGGGTGATGCTGTTTCTCCTGAGTAGCTGGGTGACGCG
i panTro5.chrX             I 135 T 189
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=6330.000000
s hg38.chrX_KI270880v1_alt  90922 72 +    284869 GTTTCTCCCGAGTAGCTGGGTGACGCCGTTTCTCCCGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCTG
s panTro5.chrX             217276 72 + 155549662 GTTTCTCCCGAGTAGCTGGGTGACACCGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTCTCCCGAGTAGCTG
i panTro5.chrX             T 189 T 265
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  90994 28 +    284869 AGTGACGCCGTTTCTCCCGAGTAGCTGG
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e panTro5.chrX             217348 265 + 155549662 T
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=12147.000000
s hg38.chrX_KI270880v1_alt  91022 158 +    284869 TGACGCCATTTCTCCTGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GG
s panTro5.chrX             217083 160 + 155549662 TGACGCGGCTTCTCCAGAGTAGCTGGGTGACGCTGTTTCCCCAGAGTAGCTGGTGATGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGGG
i panTro5.chrX             T 265 T 133
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=15023.000000
s hg38.chrX_KI270880v1_alt  91180 184 +    284869 TGACGCTGTTTCTCCAGAGTAGCTGGTGACGCTGTTTCTCCCGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCTGTTTCTCCAGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGG
s panTro5.chrX             217110 186 + 155549662 TGACGCTGTTTCCCCAGAGTAGCTGGTGATGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGG
i panTro5.chrX             T 133 I 135
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=3563.000000
s hg38.chrX_KI270880v1_alt  91364 52 +    284869 TGAAGCCGTTTCTCCAGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCTGG
s panTro5.chrX             217431 53 + 155549662 TGATGCTGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTctcccgagtacctgg
i panTro5.chrX             I 135 T 241
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=14546.000000
s hg38.chrX_KI270880v1_alt  91416 207 +    284869 TGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCAGAGTAGCTGAGTGACGCCGTTTCTCCAGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCT
s panTro5.chrX             217243 212 + 155549662 TGACGCGGCTTCTCCTGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACACCGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTCTCCCGAGTAGCTGGGTGACGTGGTTTCTCCCAAGTATCTGGGTGACACTGTTTCTCCGGAGTACCTGGGTGATGCCATTTCTCCCGAGTAGCTGGGTGATGCTGTTTCTCCTGAGTAGCT
i panTro5.chrX             T 241 T 267
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  91623 26 +    284869 GGTGACGCCGTTTCTCCCGAGTAGCT
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e panTro5.chrX             217455 267 + 155549662 T
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=8217.000000
s hg38.chrX_KI270880v1_alt  91649 104 +    284869 GGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCAGAGTAGCTGGTGACGCTGTTTCTCCAGAGTAGCT
s panTro5.chrX             217188 105 + 155549662 GGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT
i panTro5.chrX             T 267 T 133
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=6115.000000
s hg38.chrX_KI270880v1_alt  91753 79 +    284869 GG-TGACGCCGTTTCTCCCGAGTAGCTGGGTGATGTTGTTTCTCCGGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT
s panTro5.chrX             217160 80 + 155549662 GACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTT
i panTro5.chrX             T 133 T 105
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  91832 28 +    284869 GGTGACGCCGTTTCTCCCGAGTAGCTGA
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e panTro5.chrX             217240 105 + 155549662 T
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=18398.000000
s hg38.chrX_KI270880v1_alt  91860 238 +    284869 GTGACGCCGTTTCTCCAGAGTAGCTGAGTGACGCCGTTTCTCCCGAGTAGCTGAATGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCT-GGTGACGCCGTTTCTCCAGAGTAGCT-GGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCCGTTTCTCCCGAGTAGCT-GG
s panTro5.chrX             217135 242 + 155549662 GTGATGCCGTTTCTCCAGAGTAGCTGACTGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGTTCCTCCCGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGTTGGGTGACGCGGCTTCTCCTGAGTAGCTGGTGACGCCGTTTCTCCCGAGTAGCTGGGTGACACCGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTCTCCCGAGTAGCTGGGTGACGTGGTTTCTCCCAAGTATCTGGG
i panTro5.chrX             T 105 T 81
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841   0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212   0 +    417917 C

a score=110742.000000
s hg38.chrX_KI270880v1_alt  92098 1341 +    284869 TGACGCCGTTTCTCCGGAGTAGCTGG-TGACGCCGTTTCTCCCGAGTAGCTGGGTGACGCGGCTTCTCCCGAGTAGCTGGGTGACGCGGCTTCTCCCGAGTAGCTGGGTGACGCGGTTTCTCCAGAGTAGCTGGGTGATGCGGTTTCTCCCGAGTAGCTGGGTGACGCGGTTTTTCCTGAGTAGCTGGGtgacatggtttggctatgtcccctcccaaggtttaccttgaacggttatcatccccacgtgtcaagggcagggccaggtggagagaattgaatcatagggtcagtttcccccagactgttctcgtggtagtgaataggtctcatgagatctgatttttttttttttttttttttttgagacagagtctcgctcttgtcacccaggctggagtgcaatatcatgatctcggctcactgcaacctctgcctcccaagtagctgggattacaagcacccgccaccacacctggctaattttttgtatttttaatagaaacgaggtttcaccatgttggccacgttgatctcaaactcctcacctcaggtgatctaccctcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgtgcccggccaagatctgatggttttataaatgggagcacccctctatacgccctttttttgcctgccgccatgtaagatgtgactttgctccttcttcgtcttccgccatgattgtgaggcctccccagccatgcggaaatgtgagtccattaaacctctttcctttataaattaccccatcttcgttatgcctttattagcagcctgagaacagactagtacaCTTGGACTGTAGGTGCACAACACCATCCCCAGTTAAGTTTTTTTGGTTTGTttttttgtagagagaggttctccctatatgcccaggctggttttgaactcctggcctcaagtgatcctcctgtcccagcctccaaaactgctgggattatgggtatgaaccatggtgtccagACATCAGAATACATTTTATTTTAtttttgttttactttattttatttttttttgaggcagagtctcgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccggcttccaggttcaagcgattctcctgcctcagcctcctgagtagctgggatgacagtcacctgccaccatgcccgggctaatttttgtatttttagtagagatggggtttcaccatgttggccagtctggtctcaaactcctgacctcaagtgatccacccgccttcgcctcccatagtgctgggatgacaggcgtgagccaccgcAGCAGGCTG
s panTro5.chrX             217296 1289 + 155549662 TGACACCGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTCTCCCGAGTAGCTGGGTGACGTGGTTTCTCCCAAGTATCTGGGTGACACTGTTTCTCCGGAGTACCTGGGTGATGCCATTTCTCCCGAGTAGCTGGGTGATGCTGTTTCTCCTGAGTAGCTGGGTGACGCGGTTTctcccgagtacctgggtgacatggtttggctatgtctcctcccaaggtttaccttgaacggttatcatccccacatgtcaagggcagggccaggtggagagaattgaatcatagggtcagtttcccccagactgttctcgtggtagtgaataggtctcatgagatctgattttttttttttttttttt----gagacagagtctcgctcttgtcacccaggctggagtgcaatggcatgatctcggctcactgcaacctctgcctcccaagtagctgggattacaggcgcccgccaccacacctggctaattttttgtatttttaatagaaacgaggtttcaccatgttggccacgttgatctcaaactcctcacctcaggtgatccaccctcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgtgcccggccgagatctgatggttttataaatgggagcacccctctatatgccctttttttgcctgccaccatgtaagatgtgactttgctccttcttcatcttccgccatgactgtgaggcctccccagccatgtggaactgtgagtccattaaacctctttcctttataaattaccccatcttggttatgcctttattagcaacctgagaacagactggtacacttggactataggtgcacaacaccatccccagttaagtttttttg-------------tagagagaggttctccctatatgcccaggctggttttgaactcctggcctcaagtgatcctcctgtcccagcctcccaaactgctgggattatgggtatgaaccatggtgtccagACATCAGAATACATTTTATTTTAtttttgttttactttattttatttttttt-gaggcagagtctcactctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaatctccgcctccc-ggttcaagcgattctcctgcctcagcatcctgagtagctgggatgacagtcacctgccaccacacccag-ctaatttttgtatttttagtagagatggggtttcaccatgttggccagtctggtctcaaactcctgacctcaagtgatccacccgccttcacctcccatagtcct---------------------------------
i panTro5.chrX             T 81 C 0
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         137283 1259 +  11138919 I
e chlSab2.chrUn_KE147541v1 122841    0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212    0 +    417917 C

a score=3034.000000
s hg38.chrX_KI270880v1_alt  93439 50 +    284869 GGGTGCAGCTAACTTGAAAGCAGGACACTCAGTGGGAGCCTTCAGGCttt
s otoGar3.GL873584         138542 50 +  11138919 ggatGCAGCTAACTTTCAAGCAGGATGCTGAGTGGGGGTCTCCAGAGTTT
i otoGar3.GL873584         I 1259 I 2
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e panTro5.chrX             218585  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 122841  0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212  0 +    417917 C

a score=0.000000
s hg38.chrX_KI270880v1_alt  93489 1 +    284869 t
e manLeu1.NW_012108508v1    54453 3990 -    350446 T
e saiBol1.JH378345         159566 14883 +    465904 I
e otoGar3.GL873584         138592 2 +  11138919 I
e panTro5.chrX             218585 0 + 155549662 C
e chlSab2.chrUn_KE147541v1 122841 0 -    811265 C
e cerAty1.NW_012001098v1   138237 2084 -   1025902 I
e colAng1.NW_012115411v1   207846 1905 +   1230721 I
e macNem1.NW_012017243v1   189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1   156212 0 +    417917 C

a score=2788.000000
s hg38.chrX_KI270880v1_alt      93490 11 +    284869 ttttttttttg
s panTro5.chrX                 218585 10 + 155549662 -tttttttttg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1      5 11 -    177848 ttttttttttg
i panPan2.chrUn_NW_014024190v1 N 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             138592  2 +  11138919 I
e chlSab2.chrUn_KE147541v1     122841  0 -    811265 C
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1       156212  0 +    417917 C

a score=27744.000000
s hg38.chrX_KI270880v1_alt      93501 60 +    284869 agatggagtcttgctctgtcacccaggctggagtgcagtggtgtgatctcggctcactga
s panTro5.chrX                 218595 60 + 155549662 agatggagtctcgctctgtcatccaggctggagtgcagtggcgtgatcttggctcactgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     16 60 -    177848 agatggagtctcgctctgtcatccaggctggagtgcagtggcatgatctcggctcactgc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s chlSab2.chrUn_KE147541v1     122841 60 -    811265 agacagagtcttgctgtgtttcctgggctggagtgcagtgatgcgatctcggctcactgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             138592  2 +  11138919 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1       156212  0 +    417917 C

a score=193023.000000
s hg38.chrX_KI270880v1_alt      93561 236 +    284869 aacctccgcctcccgggttcaaacgattctcctgcctcagcctcctgagtagccgggattacaggtgcccgccaccacacctgggtaa-ttttgtatttttagtagaaatggggtttctccatgttggccaggctggtcttgaactcttgacctcaggtgatccacacgcctcggcctcccaaagtgctgggatgacaggcgggagccaccgcgcctggcTGCCTTCGGACCTCTCG
s panTro5.chrX                 218655 236 + 155549662 aacctccgcctcccgggttcaaatgattctcctgcctcagcctcctgagtagccgggattacaggtgcccaccaccacacctggctaa-ttttgtatttttagtagagacggggtttctccatgttggccaggctggtcttgaactcctgacctcgggtgatccacccgcctcggcctcccgaagtgctgggatgacaggcgtgagccaccgcacctggcTGCCTTCGGACCTCTCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     76 236 -    177848 aacctccgcctcccgggttcaaatgattctcctgcctcagcctcctgagtagccgggattacaggtgcccgccaccacacctggctaa-ttttgtatttttagtagagacggggtttctccatgttggccaggctggtcttgaactcctgacctcgggtgatccacccgcctcggcctcccgaagtgctgggatgacaggcgtgagccaccgcacctggcTGCCTTCGGACCTCTCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156212 237 +    417917 aacctccgcctcctgggttcaagccattctcctgtctcagcctcccaagtagctgggattacaggcacccaccaccacacccggctactttttgtatttttagtagagatggggtttctccatgttggccaggctggtcttgaactcctgacctcaggtgatccacacgcctcggcctcccaaagtgctgggatgacaggcgtgagctaccgcgcccggcTGCCTTCGGACATCTCG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     122901 229 -    811265 agcctccaccgcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggacgacaggcacctgccaccacatctggctaatttttgtatttttagtagagacggggtttcaccacgttggccaggctggtctcgaactcctgacctt--gtgatccacccgcctcggcctcccgaagtgctgggatgacaggcgtgagccaccgcgcccggcTGCCTTCAGAC------
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             138592   2 +  11138919 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=77472.000000
s hg38.chrX_KI270880v1_alt      93797 95 +    284869 GTGGGAGGAACGTGTGGGTCCTATCCAAGCATCAGCTCTGTCTCCTACCTGCTCTCACCTCCGTGGGCACGCCTGGTTCTCGGCACCCGTGGCAG
s panTro5.chrX                 218891 95 + 155549662 GTGGGAGGAACGTGTGGGTCCTATTCAAGCATCAGCTCTGTCTCCCACCTGCTCTCACCTCCGTGGGCACGCCTGGTTCTCGGCACCCGTGGCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    312 95 -    177848 GTGGGAGGAACGTGTGGGTCCTATTCAAGCATCAGCTCTGTCTCCCACCTGCTCTCACCTCCGTGGGCACACCTGGTTCTCGGCACCCGTGGCAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156449 95 +    417917 GCGGGAGGAACGTGTGGGTCCTATTCAAGCATCAGCTCTGTCTCCCACCTGCTCTCACCTCCGTGGGCACGCCTGGTTCTCGGCACCCGTGGCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     123130 49 -    811265 ----------------------------------------------ACCTGCTCTCACCTCCATGCGCACACCTGGTTCTCAGCACCCGTGGCAG
i chlSab2.chrUn_KE147541v1     C 0 I 144
s otoGar3.GL873584             138594 95 +  11138919 GCAGGAGGTACTTGTGGTCTTTATGTGAGAGTTGAGCCTGTCTCCCACAGCAGCCAGCCTCTGAGGGCACACTCTGTTCTCGGCACCCACAGTTG
i otoGar3.GL873584             I 2 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=10915.000000
s hg38.chrX_KI270880v1_alt      93892 14 +    284869 CCGGGCTGTTGAGC
s panTro5.chrX                 218986 14 + 155549662 CTGGGCTGTTGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    407 14 -    177848 CTGGGCTGTTGAGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156544 14 +    417917 CCGGGCTGTTGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             138689 14 +  11138919 CTGGGTTGCTCAGC
i otoGar3.GL873584             C 0 I 449
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=175037.000000
s hg38.chrX_KI270880v1_alt      93906 249 +    284869 CTCGGCTGGGGTTTGCAG----------------AGGTTTTCTGG------------GAAGAGCTACTCCAATTCAGGCG-GACTGGCAGATCTGGAGAATTCCATGACCCCGGGGACCCAGGGCAGCTGTCGTGACTGTGGGGTGCAAGGACCTGGTGGCCAGGTGGATCCCAGGCATTGCGATGGGCTCCACGGTGAGCTGTGGAAAAGAGCCTGGGTCCTGGATTTTATGTCTGGGAATCTGCT-------GACCACACTTGCCCAACTGCTTTACTCATAG
s panTro5.chrX                 219000 256 + 155549662 CTCGGCTGGGGTTTGCAG----------------AGGTTTTCTGG------------GAAGAGCTACTCCAATTCAGGCGAGACTGGCAGATCTGGAGAATTCCACGGCCCCGGGGACCCAGGGCAGCTGTCGTGACTGTGGGGTGCAAGGACCTGGTGGCCAGGTGGATCCCAGGCATTGCGATGGGCTCCATGGTGAGCTGTGGAAAAGAGCCTGGGTCCTGGATTTTATATCTGGGAATCTGCTTGCCCACAACCACACTTGCCC-ATGGCTTTCCTCGTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    421 256 -    177848 CTCGGCTGGGGTTTGCAG----------------AGGTTTTCTGG------------GAAGAGCTACTCCAATTCAGGCGAGACTGGCAGATCTGGAGAATTCCACGGCCCCGGGGACCCAGGGCAGCTGTCGTGACTGTGGGGTGCAAGGACCTGGTGGCCAGGTGGATCCCAGGCATTGCGATGGGCTCCATGGTGAGCTGTGGAAAAGAGCCTGGGTCCTGGATTTTATATCTGGGAATCTGCTTGCCCACAACCACACTTGCCC-ACGGCTTTCCTCGTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156558 249 +    417917 CTCGGCTGGGGTTTGCAG----------------AGGTTTTCTGG------------GAAGAGCTACTCCAATTCAGGCGAGACTGGCAGATCTGGAGAATTCCACGGCCCCGGGGACCCAGGGCAGCTGTCGTGACTGTGGGGTGCAAGGACCTGGTGGCCAGGTGGATCCCAGGCATTGCGATGGGCTCCACGGTGAGCTGTGGAAAAGAGCCTGGGTCCTGGATTTTATGTCTGGGAATCTGCT-------GACCACACTTGCCC-ACTGCTTTGCTCATAG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             139152 273 +  11138919 CTCTGCCTGGGCTTGCAGGAGGATTGCCCTACCCAGGTTTTCCTGTCCAGGTTTGCAGGAGGACTACTCTGGGTCAGGTGAGATTCCCAAGCCCAGAGAATTCTGTGGCCC--AGGACCCGGGGCAGCTGTCCTGACTGTGGGATACAAGTATTTGATGG-CAAGTGGCTCCCAGGCTTTGGGGCTGATTCCATTCTGAGCTCTGGAAAAGAGCCACAGGTCTGCATTTTATATCTGGAAATCTGCT-------GACCACACTTGGCC-GT-GCTGTGTTCAGAG
i otoGar3.GL873584             I 449 I 4394
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=19340.000000
s hg38.chrX_KI270880v1_alt      94155 39 +    284869 TGGTAAAAGCAGCTACTTTTAggctgggcacggtggctc
s panTro5.chrX                 219256 39 + 155549662 TGTTAAAAGCAGCTACTTTTAggccgggcgcggtggctc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    677 39 -    177848 TGTTAAAAGCAGCTACTTTTAggctgggcgcggtggctc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156807 39 +    417917 TGTTAAAAGCAGCTACTTTTAggccgagcaccgtggctt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=33476.000000
s hg38.chrX_KI270880v1_alt      94194 135 +    284869 acgcctgtaatcccagcactttgggaggctgaggcgggtgcatcccctgaggtcaggagttcgagaccagcctggccaacatggcgaaaccctgtctctactaaaaatac-aaaaatcaCCTAggcatggtggcat
s panPan2.chrUn_NW_014024190v1    716 136 -    177848 acgcctgtcatcccagcactttgggaggctgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggcgaaaccccgtctccactaaaaatacaaaaaatcacctgggcatggtggcat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156846 135 +    417917 acgcctgtaatcccagcactttgggaggctaaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggagaaaccccgtctctactaaaaatac-aaaaatGAgctgggcatggtggcgg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e panTro5.chrX                 219295   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=8268.000000
s hg38.chrX_KI270880v1_alt      94329 16 +    284869 gcgcctgtaatcccag
s panTro5.chrX                 219295 16 + 155549662 gcgcctgtcatcccag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    852 16 -    177848 gcgcctgtaatcccag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       156981 16 +    417917 gtgcctgtaatcccag
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=35019.000000
s hg38.chrX_KI270880v1_alt      94345 135 +    284869 cactttgggaggctgaggcgggcggatcacccgaggtcaggagttcgagaccagcctggctaacgtgtcgaaaccctgtctctactaaaaatacaaaaa-tcacctgggcatggtggcatgtgcctgtaatcccag
s panTro5.chrX                 219311 136 + 155549662 cactttgggaggctgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggcgaaaccccgtctccactaaaaatacaaaaaatcacctgggcatggtggcatgcgcctgtaatcccag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       156997 135 +    417917 cactttgggaggctgaggcgggaggatcacctgaggtcaggagttcgagaccagcctggctaacgtggcgaaaccccgtctctactaaaaatacaaaaa-tcacctgggcatggtggcgggcgcctgtaatcccag
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e panPan2.chrUn_NW_014024190v1    868   0 -    177848 C

a score=8034.000000
s hg38.chrX_KI270880v1_alt      94480 15 +    284869 ctactcaggagtctg
s panTro5.chrX                 219447 15 + 155549662 ctactcaggaggctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    868 15 -    177848 ctactcaggaggctg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       157132 15 +    417917 ctactcaggaggctg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I

a score=79126.000000
s hg38.chrX_KI270880v1_alt      94495 305 +    284869 aggcaggagaattgcttgaacccaagaggccgaggtggcaatgagctgagatcgcgacatttcactccagcctgggtgacaaagactgaaactccgactcaaaaaaaaaaaaaaa-----gaaTGTTGTT-----GATGTCTGCCCCAAAGCAGCTTGCTTTAGTTATAGTGTTAAAAGTGGCTACTTTTAggccgggcatgttggctcacacctgtcatcccagcgctttgagaggccgaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaa
s panTro5.chrX                 219462 310 + 155549662 aggcaggagaatcgcttgaacccgagaggctgaggtggcaatgagctgagatcgtgccgtttcactccagcctgggtgacaaagactgaaactctgactcaaaaaaaaaaaaaaaaaaaagaaTGTTGCT-----GGTATCTGCCCCAAAGCAGCTTGCTTTAGTTATAGTGTTAAAAGCGGCTACTTTTGggccgggcatgttggctcatgcctgtcatcccagcactttgagaggccaaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    883 309 -    177848 aggcaggagaatcgcttgaacccgagaggctgaggtggcaatgagctgagatcgtgccgtttcactccagcctgggtgacaaagactgaaactctgactcaaaaaaaaaaaaaaa------aaCGATGTTAGCTAGGTATCTGCCCCAAAGCAGCTTGCTTTAGTTATAGTGTTAAAAGCGGCTACTTTTGggccgggcatgttggctcacgcctgtcatcccagcactttgagaggccaaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaa
i panPan2.chrUn_NW_014024190v1 C 0 M 5382
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1       157147   0 +    417917 C

a score=147662.000000
s hg38.chrX_KI270880v1_alt      94800 1692 +    284869 atacaaaaatcacctggtcacggtggtgggcacctgtaattgcagctactcggaaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccgagatcacaccattgcactccagcctcggtggcagagtgagactgtgtctaaataaataaataaataaataaataaataaataaataaataaTTTGGggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcgtggtggcgg-cgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgaaccgagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaacaaagaaacaagcaaacaaacaaa--aaaaAACTTAAAAATTAgccagctgtggtggtgcacacctatagtcccagctactcaggaggctgaggcaggagaatggggtgaacccgggaggccgagcttgcagtgagctgagatggcaccactgcactccaggctgggcgacagagcgagactccgtctcaaaaaaaaaaaacaaa---cttaaaaattagccagctgtggcggtgcacacctatagtcccagctactcaggaggctgaggcaggaggattgcctgagcctaggaggtcgaggctgcagttagctgtgatcgcaccactgcactccagcctgggcaacagaccaaaacctcgtctccaaaaaaaaagtaaataaaTAAAGTTGCAATGACTCCCATTGCCGATTCAAAGAGCTTTTATGAATGTCTCAATATACTTGCCTAGCCT--------GTTTTTGGATTCAAACGCAAAGTTTTGTTCACCGTAGGTGGGAGATCAAGTTGGCAACAATAGTGTTCCAAGGTAATACACCCTGTATCTCAGAGAAATTGAAATATAACCATCTCAGAGGTTTTTTGTTTCTTTGGTTTTTTGAGACTGTCTCAAAGAAAAAAATTGAAACCCTGCTCCAGGGCTAGGAACCCACAAATTTGAGCACAGCTGTCACTGTCGGTATCAAACttgtctttattttttcagctgaggtcttgctctgttgcccaggctggagtgcagtgttgggatctcagctccttgcagcctcaaccctctgggctccaccaatcctcctgcatcagcctcccgagtagctgggactacaggtgtgcgccaccatgcctggccaattttaaatttgttttttgagagatgggggtcttgcaatattgtccaggctggtttcaaactcctggcctcaagcgatgctctcatatcggcctcctgagtggttgggactacgagcgtgagccaccatgctcggcTGATTTTATTTTTAAATTGTTTGTAGAggccaggtgcagtgggtcttgcctgtaatcccagcactttgggaggccgaggccggtggattgcttgagcccaggagttcaagaccagccttgccagtatggcaaaacctcatctctactaaaaaaaaaaatacaaaaaaaaaaattagccaggtgtgatggtgtgtgcctgttatcccagctactcgggagagta
s panTro5.chrX                 219772 1684 + 155549662 atacaaaaatcacctggtcacggtggcgggcgcctgtaattccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccaagatcgcaccactgcactccagcctcggtgacagagtgagactgtgtctaaataaataaataaataaataaataaat----------------TGGggccgggcgcggtggctcacacctgtcatcccagcactttgggaggcccaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagctgggcatcgtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagatcgcaccactgcactgcagcctgggcgacagagcgagactccatctcaaaacaaagaaacaagcaaacaaacaaaCAAAAAAACTTaaaaattagccagctgtggtggtgcacacctctagtcccagctacttaggaggctgaggcaggagaatggggtgaacctgggaggtggagcttgcagtgagctgagattgcaccactgcactccagcctgggtggcagagcgagactctgtctcaaaaaaaaaaaaaaaaaaacttaaaaaTTAgccagatgtggcggtgcacacctatagtcccagctactcaggaggctgaggcaggaggattgcctgagcctaggaggtcaaggctgcagttagctgtgatggcaccactgcactccagcctgggcaacagaccaagacctcgtctccaaaaaaaa--taaataaataaAGTTGCAATGACTCCCATTGCCGATTCAAAGAGCTTTTATGAATGTCTCAATATACTTGCCTAGCCTACATGCCTGTTTTTGGATTCAAACGCAAAGTTTTGTTCACCGTAGGTGGGAGATCAAGTTGGCAACAATAGTGTTCCAAGGTAATACACCCTGTATCTCAGAGAAATTGAAATATAACCATCTCAGAGGTTTTTTGTTTCTTTGGTTTTTTGAGACTGTCTCAAAGAAAAAAATTGAAACCCTGCTCCAGGGCTAGGAACCCACAAATTTGAGGACAGCTGTCACTGTCGGTATCAAACttgtctttattttttcagctgaggtcttgctctgttgcccaggctggagtgcagtgttgggatctcagctccttgcagcctcaaccctctgggctccaccaatcctcctgcatcagcctcccgagtagctgggactacaggtgtgcgccaccatgcctgactaattttaaatttgttttttgagagatgcgggtcttgctatattgtccacactggtttcaaactcctggcctcaagcgatgctctcatatcggcctcctgagtggttgggactacgagcgtgaggcaccatgctcggcTAATTTTATTTTTAAATTGTTTGTAGAggccaggtgcagtggctcttgcctgtaatcccagcactttgggaggccgaggccggtggattgcttgagcccaggagttcaagaccagccttgccagtatggcaaaacctcatctctactaaaaaaaa---tacaaaaaaaaaa-ttagccaggtgtgatggtgtgtgcctgttatcccagctactcgggagacta
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179  144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e gorGor5.CYUI01015925v1       157147    0 +    417917 C
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=23175.000000
s hg38.chrX_KI270880v1_alt      96492 88 +    284869 aggcaggagaattgcttgaacctgggaggcggacgttgcagtgagctgagatcgtgggtgacagcgaaagtctgtctcaaaaag--aaaa
s panTro5.chrX                 221456 88 + 155549662 aggcaggagaattgcttgaacctgggaggcggaggttgcagtgagctgagatcgtgggtgacagcgaaagtctgtctcaaaaag--aaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157147 90 +    417917 aggcaggagaatcgcttgaacctgggaggcggaggttgcagtgacctgagatcgtgggtgacagcgaaagtctgtctcaaaaagaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e chlSab2.chrUn_KE147541v1     123179 144 -    811265 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e macNem1.NW_012017243v1       189379 6797 +  25972781 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=35875.000000
s hg38.chrX_KI270880v1_alt      96580 48 +    284869 aaaaaaaTCAATGGTTTGTGAAAATACAGCC-GGTGACCATGGACCCCC
s panTro5.chrX                 221544 48 + 155549662 aaaaaaaTCAATGCTTTGTGAAAATACAGCC-GGTGACCACGGACCCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157237 48 +    417917 aaaaaaaTCAATGCTTTGTGAAAATAGAGCC-GGTGACCACGGACCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196176 49 +  25972781 AAAAAAATCAATGCTCTGTGAAAATAGAGCTGGGGGACCACGGACCCGC
i macNem1.NW_012017243v1       I 6797 C 0
s chlSab2.chrUn_KE147541v1     123323 49 -    811265 aaaaaaGTCAATGCTCTGTGAAAATAGAGCCCGGGGACCACGGACCCGC
i chlSab2.chrUn_KE147541v1     I 144 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e cerAty1.NW_012001098v1       138237 2084 -   1025902 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=9534.000000
s hg38.chrX_KI270880v1_alt      96628 11 +    284869 CTAGGCAC--AGC
s panTro5.chrX                 221592 11 + 155549662 CTAGGCAG--AGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157285 11 +    417917 CTAGGCAC--AGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196225 12 +  25972781 -TAGGCACAGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       140321 11 -   1025902 CTAGACAC--AGT
i cerAty1.NW_012001098v1       I 2084 C 0
s chlSab2.chrUn_KE147541v1     123372 10 -    811265 -TAGGCAC--AGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e colAng1.NW_012115411v1       207846 1905 +   1230721 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=16233.000000
s hg38.chrX_KI270880v1_alt      96639 8 +    284869 CTCAAGCC
s panTro5.chrX                 221603 8 + 155549662 CTCAAGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157296 8 +    417917 CTCAAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196237 8 +  25972781 CTCAAGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       140332 8 -   1025902 CTCAAGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     123382 8 -    811265 CTCAAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       209751 8 +   1230721 CTCAAGCC
i colAng1.NW_012115411v1       I 1905 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             139425 4394 +  11138919 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=92352.000000
s hg38.chrX_KI270880v1_alt      96647 54 +    284869 ACCCAGAAGAAGAT----GGAAAAGGA-TTTTCTTTTAAATCAGCGAGATTTAAATAAG-----------
s panTro5.chrX                 221611 54 + 155549662 ACCCAGAAGAAGAT----GGAAAAGGA-TTTTCTTTTAAATCAGCGAGATTTAAATAAG-----------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157304 54 +    417917 ACCCAGAAGAAGAT----GGAAAAGGA-TTTTCTTTTAAATCAGCGAGATTTAAATAAG-----------
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196245 55 +  25972781 TCCTAGAGGAAGAT----AGAAAAGGGTTTTTCTTTTAGATCCGCGAGATTTAAATAAG-----------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       140340 54 -   1025902 TGCTAGAGGAAGAT----AGAAAAGGG-TTTTCTTTTAGATCAGTGAGATTTAAATAAG-----------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     123390 54 -    811265 ACCTAGAGGAAGAT----AGAAAAGGG-TTTTCTTTTAGATCAGTGAGATTTAAATAAG-----------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       209759 54 +   1230721 ACCTAGAGGAAGAT----AGAAAAGGA-TTTTGTTTTAGATCCGCGAGATTTAAATAAG-----------
i colAng1.NW_012115411v1       C 0 I 82
s otoGar3.GL873584             143819 65 +  11138919 ATCAAGAGGAGGATGTAAAGAGAAGAA-GCTTCCTGGG----AGTGAGATTTAAATAAAACTGGAAACAG
i otoGar3.GL873584             I 4394 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=6297.000000
s hg38.chrX_KI270880v1_alt      96701 5 +    284869 CATGG
s panTro5.chrX                 221665 5 + 155549662 CATGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157358 5 +    417917 CATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196300 5 +  25972781 AATGG
i macNem1.NW_012017243v1       C 0 I 48
s cerAty1.NW_012001098v1       140394 5 -   1025902 AATGG
i cerAty1.NW_012001098v1       C 0 I 63
s chlSab2.chrUn_KE147541v1     123444 5 -    811265 AATGG
i chlSab2.chrUn_KE147541v1     C 0 I 48
s otoGar3.GL873584             143884 5 +  11138919 CAGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e colAng1.NW_012115411v1       209813 82 +   1230721 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=495.000000
s hg38.chrX_KI270880v1_alt      96706 6 +    284869 CGAGCA-
s panTro5.chrX                 221670 6 + 155549662 CGAGCA-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157363 6 +    417917 CGAGCA-
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             143889 6 +  11138919 -GAGGTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     123449 48 -    811265 I
e cerAty1.NW_012001098v1       140399 63 -   1025902 I
e colAng1.NW_012115411v1       209813 82 +   1230721 I
e macNem1.NW_012017243v1       196305 48 +  25972781 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=5675.000000
s hg38.chrX_KI270880v1_alt      96712 12 +    284869 CAGCTGGGAGGC------------------------------
s panTro5.chrX                 221676 12 + 155549662 CAGCTGGGAGGC------------------------------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157369 12 +    417917 CAGCTGGGAGGC------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196353 12 +  25972781 CAGCTGGGCAGC------------------------------
i macNem1.NW_012017243v1       I 48 C 0
s chlSab2.chrUn_KE147541v1     123497 12 -    811265 CAGCTGGGCAGC------------------------------
i chlSab2.chrUn_KE147541v1     I 48 C 0
s otoGar3.GL873584             143895 42 +  11138919 CAGCTGCTGAGCTCTGTTCTCTCCAAACCCAGCCCCACTGGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        54453 3990 -    350446 T
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       140399 63 -   1025902 I
e colAng1.NW_012115411v1       209813 82 +   1230721 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=91107.000000
s hg38.chrX_KI270880v1_alt      96724 46 +    284869 CCCGCCAGGAATTCCGAAG----GTTGA-----AAGGGGCCCTGTCCGCTCCCCC
s panTro5.chrX                 221688 46 + 155549662 CCCGCCAGGAATTCCAAAG----GTTGA-----AAGGGGCCGTGTCCGCTCCCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157381 46 +    417917 CCCGCCAGGAATTCCGAAG----GTTGA-----AAGGGGCCGTGTCCGCTCCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196365 46 +  25972781 CCCGCCAGGAATTCCGAGG----GCCGA-----AAGGGGCCGTGTCCGCTCCCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       140462 46 -   1025902 CCCGCCAGGAATTCCGAAG----GCCGA-----AAGGGGCCGTGTCCGCTCCCCC
i cerAty1.NW_012001098v1       I 63 C 0
s chlSab2.chrUn_KE147541v1     123509 46 -    811265 CCCGCCAGGAATTCCGACG----GCCGA-----AAGGGGCCGTGTCCGCCCCCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        50463 46 -    350446 CCCGCCAGGAATTCCGAGG----GCCGA-----AAGGGGCCGTGTCCGCTCCCCC
i manLeu1.NW_012108508v1       T 3990 C 0
s otoGar3.GL873584             143937 50 +  11138919 CCCTCCAGAAATTCCAAAGCTGTACTGAGGCTTAAAGGGCCGGCTCAGCT-----
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e colAng1.NW_012115411v1       209813 82 +   1230721 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=1191723.000000
s hg38.chrX_KI270880v1_alt      96770 565 +    284869 ATCCTGGAAATAGTGTCCATGGAGCTGCGGAGTCCGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCACCCGGCCCCAACATTCCGTCCACACATTCCACGGCCAAG--ACAGTC--ACCCCCTGCCAGGG----ATTAACCGAGGGCCACGCTTAGTGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCTTGGCATCGGCGGTCAG-----GGTGGCTTGCAAAGGCCCGGGGTGGGTGGATGCCGGAGACGCTGGAGCTCTGAGGTCTACAGGAGGAA--TTGCTTTTCCGATGGGCTGGTCAGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGTCC--CAGCCTCCA----CAATGCCTGCCCTTCC--AAGACGAGCCAGGCCCCCCGGACAGGATGGC---AGCCCCCCTCCAGGC----CAGCA----TGACTTCAGGCCTGGGGAATGTGCCACCTTCCGAATTAGAAGGGCACTGGTTCCCACCCGCGGGGAACCGTAACACAGCGTCT-CCCTCCTTCCTCCAGGACCCACGGCTGAGC-TCGG-----AGCTGCCCGAGAGCTCGGGATGTG-------GGGTGCAGAGCAGAGGAGAA
s panTro5.chrX                 221734 565 + 155549662 ATCCTAGAAATAGTCTCCATGGAGCTGCGGAGTCCGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCACCTGGCCCCAACATTCCGTCCACACATTCCACGACCAAG--ACAGCC--GCCCCCTGCGAGGG----ATTAACCGAGGGTCACGCTTAGTGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCTTGGCATCGGCGGTCAG-----GGTGGCTTGCAAAGACCCGGGGTGGGTGGATGCCGGAGACGCTGGAGCTCTGAGGTCTACAGGAGGAA--TTGCTTTTCCGATGGGTTGGTCAGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGTCC--CAGCCTCCA----CAATGCCTGCCCTTCC--AAAACGAGCCAGGCCCCCCGGACAGGATGGC---AGCCCCCCTCCCGGC----CAGCA----TGACTTCAGGCCTGGGGAAGGTGCCACCTTCCGAATTAGAAGGGCACTGGTTCCCACCCGCGGAGAACCGTAACACAGCGTCT-CCCTCCTTCCTCCAGGACCCACGGCTGAGC-TCGG-----AGCTGCCCAAGAGCTCGGGATGTG-------GGGTGCAGAGCAGAGGAGAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157427 565 +    417917 ATCCTGGAAATAGTCTCCATGGAGCTGCAGAGTCCGGGTGGGCGCCAGGGACGAGCTTTCAACAGCTCACCTGGCCCCAACATTCCGTCCACACATTCCACGACCAAG--ACAGCC--GCCCCCTGCGAGGG----ATTAACCGAGGGTCACGCTTAGTGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCTTGGCATAGGCGGTCAG-----GGTGGCTTGCAAAGGCCCCGGGTGGGTGGATGCCGGAGACGCTGGATCTCTGAGGTCTACAGGAGGAA--TTGCTTTTCCGATGGGCTGGTCAGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGTCC--CAGCCTCCA----CAATGCCTGCCCTTCC--AAAACCAGCCAGGCCCCCCGGACAGGATGGC---AGCCCCCCTCCCGGC----CAGCA----TGACTTCAGGCCTGGGGAATGTGCCACCTTCCGAATTAGAAGGGCACTGGTTCCCACCCGCGGGGAACCGTAACACAGCGTCT-CCCTCCTTCCTCTAGGACCCACGGCTGAGC-TCGG-----AGCTGCCCGAGAGCTCGGGATGTG-------GGGTGCAGAGCAGAGGAGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196411 546 +  25972781 ATCCTGGAAATAGTCTCAG-----------AGTCTGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCTCCTGGCCCCAACATTCCGTCCACACATTCCACGACCAGG--ACAGCC--GCCCCCTGCCAGGG----ATTCACCGGGGGTCACGCCGCGCGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCTTGGCATCTGCGGTCAG-----GGCGGCTTGCAGAGGCCCGGGGCGGTTGGATGCCGGAGATGCTGGAGCTCTGAGGTCTGCAGGAGGAATTTTGCTTTTCCGCTGGGCTGGTCGGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGCCCCACAGCCTCCA----CAGTGCCTGCCCTTCCAAAAAACGAGCCAGG------------------------CCCCCTCGTAGC----CAGCA----TGACCTCAGGCCTGGGGAATGTGCCACCTTCCGAATGAGAAGGGCGCTGGGTGCCACCCGCGGGGAAACTTGACACAGCGTCT-CCCTCCTTCCTCCAGGGCCCACGGCCGAGC-TCGG-----TGCTGCCGGAGACCTCGGGGGGTGGGGTGTGGGGTGCAGAGCAGAGGAGAA
i macNem1.NW_012017243v1       C 0 I 19
s cerAty1.NW_012001098v1       140508 546 -   1025902 ATCCTGGAAATAGTCTCAG-----------AGTCTGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCTCCTGGCCCCAACATTCCGTCCACACATTCCACGACCAGG--ACAGCC--GCCCCCTGCCAGGG----ATTCACCGAGGGTCACGCCGCGCGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCTTGGCATCTGCGGTCAG-----GGCGGCTTGCAGAGGCCCAGGGCGGTTGGATGCCGGAGATGCTGGAGCTCTGAGGTCTGCAGGAGGAATTTTGCTTTTCCGCTGGGCTGGTCGGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGCCCCACAGCCTCCA----CAGTGCCTGCCCTTCCGAAAAACGAGCCAGG------------------------CCCCCTCGTAGC----CAGCG----TGACCTCAGGCCTGGGGAATGTGCCACCTTCCGAATGAGAAGGGCGCTGGGTGCCACCCGCGGGGAACCTTGACACAGCGTCT-CCCTCCTTCCTCCAGGGCCCACGGCCCAGC-TCGG-----TGCTGCCGGAGACCTCGGGGTGTGGGGTGTGGGGTGCAGAGCAGAGGAGAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     123555 506 -    811265 ATCCTGGAAATAGTCGGGG-----------AGTCTGGGTGGGCGCCGGGGACGGGCTTTCAACAGCTCTCCTGGCCCCAACGTTCCATCCACACATTCCACGACCGGG--ACAGCC--GCCCCCTGCCAGGG----ATTCGCCGTGGGTCACGCCGAGCGGCAGGAATGCTCGCACCCGATTTAGACATCCCGCTTGGCA----------------------------------------------------------------TCTGAGGTCTGCAGGAGGAATTTTGCTTTTCCGCTGGGCTGGTCAGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGCCC--CAGCCTCCA----CAGTGGCTGCCCTTCCAATAAACGAGCCAGGCCCCCGGACGGGGATGGC---AGCCCCCCTCGTAGC----CGGCA----TGACCTCAGCCCTGGGGAATGTGCCACCTTCCGAAGGAGAAGGGCGCTGGGTGCCCCCCGCGGGGAACCTTGACACGACGTCT-CCCTCCTTCCTCCAGGGCCCACGGCCGAGC-TCGG-----TGCTGCCGGAGACCTGGGGGTGTGGGGTGTGGGGTGCAGAGCAGAGGAGAA
i chlSab2.chrUn_KE147541v1     C 0 I 18
s manLeu1.NW_012108508v1        50509 548 -    350446 ATCCTGGAAATAGTCTCAG-----------AGTCTGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCTCCTGGCCCCAACATTCCGTCCACACATTCCACGACCAGGACACAGCC--GCCCCCTGCCAGGG----ATTCACCGAGGGTCACGCCTCGTGGCAGGAATGCACGCGCCCGATTTAGACATCCCGCCTGGCATCTGCGGTCAG-----GGCGGCTTGCAGAGGCCCAGGGCGGTTGGATGCCGGAGATGCTGGAGCTCTGAGGTCTGCAGGAGGAATTTTGCTTTTCCGCTGGGCTGGTCGGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGCCCCACAGCCTCCT----CAGTGCCTGCCCTTCCGAAAAACGAGCCAGG------------------------CCCCCTCGTAGC----CAGCA----TGACCTCAGGCCTGGGGAATGTGCCACCTTCCGAATGAGAAGGGCGCTGGGTGCCACCCGCGGGGAACCTTGACACAGCGTCT-CCCTCCTTCCTCCAGGGCCCACGGCCCAGC-TCGG-----TGCTGCCGGAGACCTCGGGGTGTGGGGTGTGGGGTGCAGAGCAGAGGAGAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       209895 572 +   1230721 ATCCTGGACATAGTCTCCACAGAGCTGCCCAGTCTGGGTGGGCGCCGGGGACGAGCTTTCAACAGCTCACCTGGCCCTAACATTCCGTCCACGCATTCCACGACCAAG--ACACCC--GCCCCCGGCCAGGG----ATTCACCGAGGGTCACGCCGAGCAGCAGGAAGGCACGCGCCCGATTTAGACATCCCGCTTGGCACCTGCGGTCAG-----GGCGGCTGGCAAAGGCCCGGGGCAGTTGGATGCCGGAGACGCGGCAGCTCTGAGGTCTGCAGGAGGA--TTTGCTTTTCCGCGGGGCTGGTCGGGGAGGAAGGAAGCTGGGGAGAAGCCGGGAGCCC--CAGCCTCCA----CAGTGCCTGCCCTTCCAAAAG--GAGCCAGGCTCCCGGACGGGGGTGAC---AGCCCCCCTTCTACC----CAGCA----TGACCTCAGGCCTGGGGAATGTGCCACCTTCTAAATTAGAAGGGCACTGGGTCCGACCCGTGGGGAGCCTTGACACAGCGTCT-CCCTCCTTCCTCCAGGGCCCACGGCGGAGC-TCGG-----TGCTGCCGGAGAGCTCGGGGTGTGGGGTGCAGGGTGCAGAGCAGAGGAGAA
i colAng1.NW_012115411v1       I 82 C 0
s otoGar3.GL873584             143987 504 +  11138919 TCCCTGGGGAGGGACCCTGCAAAGCTGGAGGCTATGAATAGG---CCGGGAGGGGCTCT-GCTGGCTCACCTGGTCAAAGTCTTTCCCTCACACATTCCAAAG--AGT--CCAGCTCGGCCTCCTGATGGGGAGGCATTAGCTCAGGTCCA----GATTAGCAGAA---------CCAGTTTTAGACATCCTGCTTGGCA--------CAGCATCACGCAGCTTTTAAAGGCACAGGGTGG-TAGACCCTGGAGACAC-----CTC-----------GGAGGAA--ATGTCTTCCCTCTCGGGTGTGTGGGG------------------------------C--CAGCGTCCACCCGCACTG--TGCCCTTCT--GACCCCAGCCAGC--CACTGGGCAGGATAGCCAAGACCTGTCACCAGGCAGGGCAGCAGCTGTGACCTCAGCCTCGGAGAATGTGCCACCCTCGGCATCAGAAGGGAAC-AGATGCCACCCTCATAGCACTGTGACACAGCTTATGTTCTTCTTGTAGCAGGGCTGA-GGCTGAGCATCAGGTTCCAGCTGCCTGATGGCCTGGATGGAG-------GGGAGC--------------
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=11731.000000
s hg38.chrX_KI270880v1_alt      97335 31 +    284869 ACCTCCCCCGACCCCGGGTCCTTGGGGCATA
s panTro5.chrX                 222299 27 + 155549662 --CCCCCCCG--CCTGGGTCCTTGGGGCATA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       157992 31 +    417917 ACCCCCTCCCACCCCGGGTCCTTGGGGCATA
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       141054 19 -   1025902 ------------CCCCAGTCCCTGGGACGTA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1        51057 19 -    350446 ------------CCCCAGTCCCTGGGACGTA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       210467 19 +   1230721 ----------CCCCCCAGCCTCCGGGACA--
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             144491 18 +  11138919 ------------CCCTGACCCCTGGGGCCT-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     124061 18 -    811265 I
e macNem1.NW_012017243v1       196957 19 +  25972781 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=845.000000
s hg38.chrX_KI270880v1_alt      97366 1 +    284869 G
s panTro5.chrX                 222326 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1       141073 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124079 1 -    811265 A
i chlSab2.chrUn_KE147541v1     I 18 C 0
s colAng1.NW_012115411v1       210486 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584             144509 1 +  11138919 G
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        51076 0 -    350446 C
e saiBol1.JH378345             159566 14883 +    465904 I
e macNem1.NW_012017243v1       196957 19 +  25972781 I
e gorGor5.CYUI01015925v1       158023 0 +    417917 C
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=456049.000000
s hg38.chrX_KI270880v1_alt      97367 200 +    284869 GGTCTTTTTCAGGGCCATCTGCGGAAAGAGGACCTGCGTCTTTACCACCCGGGGGCCCTT--GTCTTTGCTGCTCAGCTGTGTTTAGGTCCCCGTTGCTGGGTGAT-AC--TGGG---GAGACGTAAACAGACCTCGGTCA------GCCGGGGCTGGGGCAGGAGCAGGTGCAGCTGGACTCCAGGGCAGGGG-CCGACTGCTGTACACAGTCA
s panTro5.chrX                 222327 200 + 155549662 GGTCTTTTTCAGGGCCATCTGCGGAAAGAGGACCTGCGTGTTTACCACCCAGGGGCCCTT--GTCTTTGCTGCTTAGCTGTGTTTAGGTCCCCGTTGCTGGGTGAT-AC--TGGG---GAGACGTAAACAGACCTTGGTCA------GCCGGGGCTGGGGCAGGAGCAGGTGCAGCTGGACTCCAGGGCAAGGG-CCGGCTGCTGCACACAGTCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158023 198 +    417917 GGTCTTTTTCA-GGCCATCTGCGGAAAGGGGACCTGCGTCTTTACCACCCAGGGGCCCTT--GTCTTTGCTGCTCAGCTGTGTTTAGGT-CCCGTTGCTGGGTGAT-AC--TGGG---GAGACGTAAACAGACCTCGGTCA------GCCGGGGCTGGGGCAGGAGCAGGTGCAGCTGGACTCCAGGGCAAGGG-CCAGCTGCTGCACACAGTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       196976 194 +  25972781 GGTCTTTTTC-------TCTGCAGAAGGAGGACTTGTGTGGTTGCCACCCGGAGGCCCTT--GTCTGTGCGGCTCAGCTGTGTTTAGGTCTCCGTTGCTGGGTGATAAC--GGGG---GAGACACAAACAGAGCTCGGTCA------gccggggccggggcaggagcaggtgcagctggactgcagggcaaggg-ccggCTGCTGCCCACAGTCA
i macNem1.NW_012017243v1       I 19 C 0
s cerAty1.NW_012001098v1       141074 192 -   1025902 -GTCTTTTTC-------TCTGCAGAAACAGGACTTGTGTGGTTACCACCCGGGAGCCCTT--GTCTGTGCGGCTCAGCTGTGTTTAGCTGTCCGTTGCTGGGTGAT-AC--GGGG---GAGACACAAACAGAGCTCGGTCA------GCCGGGGCCGGGGCAGCAGCAGGTGCAGCCGGACTGCAGGGCAAGGG-CCGGCTGCTGCCCACAGTCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124080 192 -    811265 GGTCTTTTTC-------TCTGCAGTAAGAGGACCTGCGTGGTTACCACCCGGGAGCCCTT--GTCTTTGCGGCTCAGCTGTGTTTAGGTGCCCGTTGCTGGGTGAT-AC--GGGG----AGACACAAACAGACCTCGGTCA------gccggggccggggcaggagcaggtgcagctggactgcagggcaaggg-ccggctgcTGCCCACAATCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        51076 193 -    350446 GGTCTTTTTC-------TCTGCAGAAACAGGACTTGTGTGGTTACCACCCGGGAGCCCTTGAGTCCTTGCGGCTCAGTTGTGTTTAGGTGTCCGTTGCTGGGTGAT-AC--GGGG-----GAGACAAACAGAGCTCGGTCa------gccggggccggggcaggagcaggtgcagccggactgcagggcaagag-ccggCTGCTGCCCACAGTCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       210488 201 +   1230721 GGCTTTTTTC-------TCTGCAGAAAGAGGACCTGCGTGTTTACCACCCGGGGGCCCTT--GTCTTGGCGGCTCAGCTGTGTTTCGGTCTCCGTTGCTTGGTGAT-ACTGGGGG---GAGACAGAAACAGAACTCGGTCAgccggggccggggccggggcaggagcaggtgcagctggactgcagggccaggg-ccggCTGCTGCCCACGGTCA
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584             144510 200 +  11138919 GGTCTTCTTTGGGCTCTCCTGTGGAAAGAGGATCTGTATGTTGAAGACCCGGGGGCACTT--GCCTTGGCGGCTCAGCTGTGTTTGCGC-CCTGTTGCTGGGTGAC-GC--TGGGTGTTGGTTATAAATAGGAGTGGGTCA------GCCCAGGCCAGTGTGTA---AGGCGACTCTGGCTTTGGGGGCCAGGGACCGGCTGTTCCAAGTGGTCA
i otoGar3.GL873584             C 0 I 6358
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=389784.000000
s hg38.chrX_KI270880v1_alt      97567 204 +    284869 TGCTGAAAAGCATGTCAAAAATAAAAGGAGCAGGGGAAATGGCACCTTTTAttttttatt----ttattattattattatcatt---------------tttgagatggagttttgctcttgttacccaggctggagtgcaatggtgtgatctcggctcactgcaacctccgcctcccgggttcaacggattctcctgcctcagcctcccgagtagctgggat
s panTro5.chrX                 222527 207 + 155549662 TGCTGAAAAGCATGTCAAAAATAAAAGGAGCAGGGGAAATGGCACCTTTTATtttttattt-tattattattattattatcatt---------------tttgagatggagtttcgctcttgttacccaggctggagtgcaatggtgccatcttggctcactgcaacctccgcctcccgggttcaagggattctcctgcctcagcctcccgagtagctgggat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158221 204 +    417917 TGCTGAAAAGCATGTCAAAAATAAAAGGAGCAGGGGAAATGGCACCTTTTAttttttatt----ttattattattattatcatt---------------tttgagatggagtttcgctcttgttactcaggctggagtgcagtggtgggatctcggctcactgcaacctccgcctcccgggttcaagggattctcctgcctcagcctcccgagtagctgggat
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       197170 204 +  25972781 TGCTGAGAAGCATGTC----ACACCCATTGCAGGGGAAATGGCTCCttttattttttatttatttgatgatgatgattcttgtt---------------tttgagaccgagtttcgctcttgtcgcccaggctggagtgcagtggtgcagtctcagctcaccacaacctcagtctcctgggttcgagtgattctcctgcctcagcctcctgagtagctgggat
i macNem1.NW_012017243v1       C 0 I 8722
s cerAty1.NW_012001098v1       141266 204 -   1025902 TACTGAGAAGCATGTC----ACACCCGTTGCAGGGGAAATGGCTCCttttcttttttatttatttgatgatgatgattcttgtt---------------tttgagacggagtttcgctcttgtcgcccaggctggagtgcggtggtgcagtctcagctcaccacaacctcagtctcccgggttcgagtgattctcctgcctcagccttctgagtagctggggt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124272 218 -    811265 TACTGAGAAGCACGTC----ACAGCCGTTGCAGGGGAAATGGCTCCTTTTATTTTTTATTTATTTGATAATGATGGtttttgggttttttttttttttttttgagacggagtctcgctc-tgtggctcaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctggggt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        51269 204 -    350446 TGGTGAAAAGCATGTC----ACACCCGTTGCAGGGGAAATGGCTCCTTTTATTTTTTATTTATTTGATGATGATGAttcttgtg---------------tttgagacagagtttcgctcttgtcgcctaggctggagtgcagtggtgcagtctcagctcaccacaatctcagtctcccgggttcgagtgattctcctgcctcagcctcctgagtagctggggt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       210689 202 +   1230721 TACTGACAAGCCTGTC----AC--CCATTGCAGGGGAAATGGCTCCTTTTATTTTTTATTGATCTGATGACGATGATGAttgtt---------------tctgagacggagtttcgctctcgtcgcccaggctggagctcagtggttcagtctcagctcaccacaacctctgcctcccgggtccaagtgattgtcctgcctcagcctcctgagtagctgggat
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=28701.000000
s hg38.chrX_KI270880v1_alt      97771 23 +    284869 gacaggtgccca-caccacgccca
s panTro5.chrX                 222734 23 + 155549662 gacaggtgccca-caccacgcctg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158425 23 +    417917 gacaggtgccca-caccacgcctg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       141470 24 -   1025902 tccaggtgcctgccaccgcgcccg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124490 24 -    811265 gacaggcacctgccacgacgcccg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        51473 24 -    350446 gacaggtgcacaccaccacgcctg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       210891 23 +   1230721 gacaggtgccca-caccgtgcctg
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e macNem1.NW_012017243v1       197374 8722 +  25972781 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=23695.000000
s hg38.chrX_KI270880v1_alt      97794 10 +    284869 gctaattttt
s panTro5.chrX                 222757 10 + 155549662 gctaattttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158448 10 +    417917 gctaattttt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206096 10 +  25972781 gctaattttg
i macNem1.NW_012017243v1       I 8722 C 0
s cerAty1.NW_012001098v1       141494 10 -   1025902 gctaattttt
i cerAty1.NW_012001098v1       C 0 I 1246
s chlSab2.chrUn_KE147541v1     124514 10 -    811265 gctagttttt
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1        51497 10 -    350446 gctaattttt
i manLeu1.NW_012108508v1       C 0 I 571
s colAng1.NW_012115411v1       210914 10 +   1230721 gctaattttt
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=148398.000000
s hg38.chrX_KI270880v1_alt      97804 140 +    284869 gtatttttagtggagatggggtctcgccgtgtcggccaggctgttcttgaactcctgacctcaggtgatccgccagcctcggcctcccaaagtgctgggactacaggcgtg-agccaccgcgcccggccTAttttttattt
s panTro5.chrX                 222767 140 + 155549662 gtatttttagtggagatggggtctcgccgtgtcggccaggctgttcttgaactcctgacctcaggtgatccacctgcttcggcctcccaaagtgctaggattacaggcgtg-agccaccgtgcccggccTAttttttattt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158458 140 +    417917 gtatttttagtggagatggggtctcgccgtgtcggccaggctgttcttgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtg-aaccaccgcgcccggccTAttttttattt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206106 141 +  25972781 ttatttttagtggagacggggtctcgacgtgtggcccacgctggtctcgaactcctgacctcaggtgatccaccagcctcggcctcccaaagtgctggggtttcaggcgtatagccaccacgcccggccTATTTTAAAAAT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124526 138 -    811265 tattttttagtggagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctc--gtgatccgcccgtcttggcctcccaaagtgctgggattacaggcttg-agccaccgcgcccggccTGGtttttgttt
i chlSab2.chrUn_KE147541v1     I 2 I 7
s colAng1.NW_012115411v1       210924 140 +   1230721 gtatttttagtggagatggggtctccccgtgttggccacgctggtctcgaactcttgacctcaggtgatccaccggcctcggcctcccaaagtgcagggatttcaggtgtg-ggccaccctgactggccTATTAAAAAAtt
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        51507 571 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=16970.000000
s hg38.chrX_KI270880v1_alt      97944 26 +    284869 attttattattaatatttttgaggcg
s panTro5.chrX                 222907 26 + 155549662 attttactgttaatatttttgaggcg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158598 26 +    417917 attttattattaatatttttgaggcg
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206247 25 +  25972781 -ATTTATTATTATTAGCtttgagaca
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1       211064 26 +   1230721 tttttattattattatttttgagaca
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        51507 571 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e chlSab2.chrUn_KE147541v1     124664  7 -    811265 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=12618.000000
s hg38.chrX_KI270880v1_alt      97970 12 +    284869 gagtttcactct
s panTro5.chrX                 222933 12 + 155549662 gagtttcactct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       158624 12 +    417917 gagtttcactct
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206272 12 +  25972781 gagtttggctcc
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124671 12 -    811265 gagtttcaccct
i chlSab2.chrUn_KE147541v1     I 7 C 0
s colAng1.NW_012115411v1       211090 12 +   1230721 gactttcactcc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        51507 571 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e panPan2.chrUn_NW_014024190v1   1192 5382 -    177848 M

a score=55716.000000
s hg38.chrX_KI270880v1_alt      97982 35 +    284869 tgttgcccaggctggagtgcggtggcgggatctcg
s panTro5.chrX                 222945 35 + 155549662 tgttgcccaggctggagtgcagtggcgggatctcg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   6629 35 -    177848 tgttgcccaggctggagtgcagtggcacaatctcg
i panPan2.chrUn_NW_014024190v1 M 5382 C 0
s gorGor5.CYUI01015925v1       158636 35 +    417917 tgttgcccaggctggagtgcagtggcgggatctcg
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206284 35 +  25972781 tgatgtccaggttggagtgcggtggtgccatctcg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124683 35 -    811265 tgtcgcctaggctggagtgcggtggtgcgatctca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       211102 35 +   1230721 tgatgtccaggctggagtgcggtggcgccatctcg
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        51507 571 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I

a score=110061.000000
s hg38.chrX_KI270880v1_alt      98017 54 +    284869 gctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcag-tctcc
s panTro5.chrX                 222980 54 + 155549662 gctcattgcaacctccgccgcctgggttcaagtgattctcctgcctcat-tctcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   6664 54 -    177848 gctcactgcaacctccgcctcctgagttcaaacaattctcctgcctcag-cctcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       158671 54 +    417917 gctcattgcaacctccgcctcccgggttcaagtgattctcctgcctcag-tctcc
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206319 54 +  25972781 gctcactgcaacctcttgctcccgggttc-aacgattctcctgcctcagccctcc
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     124718 54 -    811265 gctcaccacaacctccgcctcccgggttcgagtggttctcctgcctcag-cctcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52078 54 -    350446 gctcactgcaacctctgcctcccgggttccagcaattctcctgcctcag-cctcc
i manLeu1.NW_012108508v1       I 571 C 0
s colAng1.NW_012115411v1       211137 53 +   1230721 gctcactgcaacctctg-ctcccgggttcaagcgagtttcctgcctcag-cctcc
i colAng1.NW_012115411v1       C 0 I 1378
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I

a score=26248.000000
s hg38.chrX_KI270880v1_alt      98071 26 +    284869 caaagtgctgagattacaggcgtgca
s panTro5.chrX                 223034 26 + 155549662 caaagtgctgagattacaggcatgca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   6718 26 -    177848 tgaatagcggggattacaggcatgca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       158725 26 +    417917 caaagtgctgagattacaggcatgtg
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206373 26 +  25972781 tgagtagctggaatgacaggtgcgtg
i macNem1.NW_012017243v1       C 0 I 2
s chlSab2.chrUn_KE147541v1     124772 26 -    811265 tgagtagctggggtgacaggtgccca
i chlSab2.chrUn_KE147541v1     C 0 I 490
s manLeu1.NW_012108508v1        52132 26 -    350446 cgagtagctgggatgacaggcacctg
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=170282.000000
s hg38.chrX_KI270880v1_alt      98097 111 +    284869 ccaccacgctcggctaa-ttttgtgtttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccaccctcctctgcctcccag
s panTro5.chrX                 223060 111 + 155549662 ccaccatgcttggctaa-ttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccaccctcctctgcctcccag
i panTro5.chrX                 C 0 I 1027
s panPan2.chrUn_NW_014024190v1   6744 112 -    177848 cgaccacatccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcttcccaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       158751 111 +    417917 ccaccacgctcggctaa-ttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccag
i gorGor5.CYUI01015925v1       C 0 I 956
s macNem1.NW_012017243v1       206401 106 +  25972781 --ccctcgcccggctaa-ttttgtatttttagtagagacggggtttcaccgtgttagcccggatggtctccatctcctgacctc--gtgat-tgcccgcctcggcctcccaa
i macNem1.NW_012017243v1       I 2 C 0
s chlSab2.chrUn_KE147541v1     125288 110 -    811265 ccaccacgcccggctagtttttgtatttttagtagagacggggtttcaccgtgttggccaggctggtctcgatctcctgacctc--gtgatccgcccgtcttggcctcccaa
i chlSab2.chrUn_KE147541v1     I 490 C 0
s manLeu1.NW_012108508v1        52158 110 -    350446 ccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccgtattagccaggatggtctcgatctcctgacctc--gtgatccgcccgcctaggcctcccaa
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=219319.000000
s hg38.chrX_KI270880v1_alt      98208 142 +    284869 agtgctgggatgacaggtgtgagccacctcacctggccCTATTTTA-TTTTTATTTTT---------TgcaaggaaggaatgaagggatttattgaaaatggaagtaccctccacagcgcgggaggagaccgagaagaggagctcaaagacT
s panTro5.chrX                 224198 148 + 155549662 agtgctgggatgacaggtgtgagccacctcacctggACCTATTTTA-TTTTTATTTTT---ATTTTTTgcaaggaaggaatgaagggatttattgaaaatggaagtaccctccacagcgtgggaggagacccagaagaggagctcaaagacT
i panTro5.chrX                 I 1027 C 0
s panPan2.chrUn_NW_014024190v1   6856 149 -    177848 agtgctgggatgacaggtgtgagccacctcacctggACCTAtttta-tttttatttttt--attttttgcaaggaaggaatgaagggatttattgaaaatggaagtaccctccacagcgtgggaggagacccagaagaggagctcaaagacT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       159818 142 +    417917 agtgctgggatgacaggtgtgagccacctcacctggccCTATTTTG-TTTTTATTTTT---------TGCAAGGAAGGAATGAAGGGATTTACTGAAAATGGAAGTACCCTCCACAGCGTGGGAGGAGACTGAGAAGAGGAGCTCAAAGACT
i gorGor5.CYUI01015925v1       I 956 C 0
s macNem1.NW_012017243v1       206507 149 +  25972781 agtgctgggatgacaggcgtgagccacggcgcccggccCTGttttattttttattttttattttttttGCAAGGAAGGAATGA-GGGATTTATGGAGAACGG-AGGACATTGCACAGCGT-GGAGCAGCCCGAGCAGAGGAGCTGAAAGACT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     125398 150 -    811265 agtgctgggatgacaggcgtgagccacctcacctggccctctttta-tttttaTTTTTT-ATTTTTTTgcaaggaaggaatgaggggatttattgagaacggaaggacattgcacagcgtgggagcagcccgagcagaggagctgaaagacT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52268 151 -    350446 agtgctgggatgacagacgtgagccagcgcgcccggccCTGTTTTA-TTTTTATTTTTTAATTTTTTTGCAAGGAAGGAATGAGGGGGTTTATGGAGAACGGAAGGACATTGCACAGCGTGGGAGCAGCCCGAGCAGAGGAGCTCAAAGACT
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             144710 6358 +  11138919 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=283238.000000
s hg38.chrX_KI270880v1_alt      98350 154 +    284869 AAA-GGGACGGGCTTTTAAAGACATTTAATTAAAAGGAATTAAGTTTCCCTTATGACATTTAG------AAAAAAG----TCAAGTCCAAATGGTACAAAACGGTCAGCTTGCTTTGTGCCTTGGCGGCCGCGTATGAAACATCATTAGAATAGAACCGGAAGCG
s panTro5.chrX                 224346 158 + 155549662 AAA-GGGACGGGCTTTTAAAGACATTTAATTAAAAGGAATTAAATTTCCCTTATGACATTTAG------AAAAAAAAAAATCAAGTCCAAATGGTACAAAACGGTCAGCTTGCTTTGTGCCTTGGCGGCCGCATATGGAACATCATTAGAATAGAACCGGAAGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7005 156 -    177848 AAA-GGGACGGGCTTTTAAAGACA-TTAATTAAAAGGAATTAAATTTCCCTTATGACATTTAG------AAAAAAA-AAATCAAGTCCAAATGGTACAAAACGGTCAGCTTGCTTTGTGCCTTGGCGGCCGCATATGGAACATCATTAGAATAGAACCGGAAGCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       159960 158 +    417917 AAA-GGGACCGGCTTTTAAAGACATTTAATTAAAAGGAATTAAATTTCCCTTATGACATTTAG------AAAAAAAAAAATCAAGTCCAAATGATACAAAATGGTCAGCTTGCTTTGTGCCTTGGCGGCCGCATATGGAACATCATTAGAATAGAACCGGAAGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206656 151 +  25972781 AAAGGGGATGGGCTTTTAAAGACGTTTAATTAAAAGAA--TTAATTTCCCTTATGACATTTAG-----------AAAAAAAAAAGTCCAAATGGTACAAAACAGTCAGCTTGCTTTGTGCCTGGCGCG-GGCGTCCGGAACATCATTAGAATAGAACCGGAAGCG
i macNem1.NW_012017243v1       C 0 I 54
s chlSab2.chrUn_KE147541v1     125548 158 -    811265 AAA-GGGATGGGCTTTTAAAGACGTTTAATTAAAAGGAATTAAATTTCCCTTATGACATTTAG------AAAAAAAAAAAAAACGTCCAAATGGTGCAAAACAGTCAGCTTGCTTTGTGCCTGGGCAGCGGCGTCCGGAACCTCATTAGAATAGAACCGGAAGCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52419 164 -    350446 GAA-GGGATGGGCTTTTAAAGACGTTTAATTAAAAGGAATTAAATTTCCCTTATGACATTTAGGaaaaaaaaaaaaaaaaaaaaGTCCAAATGGTACAAAACAGTCAGCTTGCTTTGTGCCTGGGCCGCGGCGTCCGGAACATCATTAGAATAGAACCGGAAGCG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             151068 149 +  11138919 AAA-GGGATGGGCCTTTAAAGACATTTAATTAAAAGAAATCAAATCTTCCTCCCTAAATTTCA------TAAAAAT--------ACTCAAATGTTACAAAACATTCTGCTTTTTTTTTTTTTTAAACTGAGC-TTCAGAATATCATTAGAATAAAACCTGCAGCC
i otoGar3.GL873584             I 6358 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=21627.000000
s hg38.chrX_KI270880v1_alt      98504 22 +    284869 TCTAGATTTTCACTTTTCACCC-----------------------
s panTro5.chrX                 224504 22 + 155549662 TCTAGATTTTCACTTTTCACCC-----------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7161 22 -    177848 TCTAGATTTTCACTTTTCACCC-----------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       160118 22 +    417917 TCTAGATTTTCACTTTTCACCC-----------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     125706 21 -    811265 TCTGGATTTTAAC-TTTCACCC-----------------------
i chlSab2.chrUn_KE147541v1     C 0 I 31
s manLeu1.NW_012108508v1        52583 21 -    350446 TCTGGATTTTAAC-TTTCACCC-----------------------
i manLeu1.NW_012108508v1       C 0 I 31
s otoGar3.GL873584             151217 44 +  11138919 TGTGGACTTTAAC-TTCAGCCCGAGGAGCTGCCGAGCTTTCATTA
i otoGar3.GL873584             C 0 I 8
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       206807 54 +  25972781 I

a score=28631.000000
s hg38.chrX_KI270880v1_alt      98526 26 +    284869 TGAAAGATGAAACAGAGATGAAAGCA
s panTro5.chrX                 224526 11 + 155549662 TGA---------------TGAAAGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7183 11 -    177848 TGA---------------TGAAAGCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       160140 26 +    417917 TGAAAGATGAAACAGAGATGAAAGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206861 26 +  25972781 TGAAAGTTGAAAGAGAGATGAGAGAA
i macNem1.NW_012017243v1       I 54 C 0
s chlSab2.chrUn_KE147541v1     125758 26 -    811265 TGAAAGATGAAAGAGAGATGAGAGAA
i chlSab2.chrUn_KE147541v1     I 31 C 0
s manLeu1.NW_012108508v1        52635 26 -    350446 TGAAAGATGAAAGAGAGATGAGAGAA
i manLeu1.NW_012108508v1       I 31 C 0
s otoGar3.GL873584             151269 26 +  11138919 TGAAAGATTAGATATAGATGAAAGAA
i otoGar3.GL873584             I 8 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       141504 1246 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=84468.000000
s hg38.chrX_KI270880v1_alt      98552 28 +    284869 GTCACCAATTTTCTCTAATTATTTTGCA
s panTro5.chrX                 224537 28 + 155549662 GTCACCAATTTTCTCTAATTATTTTGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7194 28 -    177848 GTCACCAATTTTCTCTAATTATTTTGCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       160166 28 +    417917 GTCACCAATTTTCTCTAATTATTTTGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206887 27 +  25972781 GTCA-CAATTTTCTCTAATTATTTAGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       142750 28 -   1025902 GTCACCAATTTTCTCTACTTATTTTGCA
i cerAty1.NW_012001098v1       I 1246 I 1964
s chlSab2.chrUn_KE147541v1     125784 28 -    811265 GTCACCAATTTCCTCTAATTATTTAGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52661 28 -    350446 GTCACCAATTTTCTCTAATTATTTTGCA
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             151295 28 +  11138919 GTCACCAATTTTCTCTAATTATTTTGCA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=299019.000000
s hg38.chrX_KI270880v1_alt      98580 204 +    284869 ATTAAGCGTCCGAGCACCCCAGGTAGCGTGGACTCCCACAGCTCTTAAACCAAATAC---------------------CTGAC-----TGTCTGAAATTAATTAT--AAAAATGGATCAAGG------------GGTGGTTTTCACGTGGTGGCTGATGAATGCTTTCTGAGTCTTGTTTTCCTGTTTGTTTACCGT-GGCACGTAAGAC-GTACAGAACATAAAATTCACCGTGTGAGCCAttt----------t
s panTro5.chrX                 224565 207 + 155549662 ATTAAGCATCCGAGCATCCCAGGTAGCGTGGACTCCCACAGCTCTTAAACCAAATAC---------------------CTGAC-----TGTTTGAAATTAATTAT--AAAAATGGATCAAGG------------GGTGGTTTTCACGTGGTGGCTGATGAATGCTTTCCGAGTCTTGTTTTCCTGTTCGTTTACTGT-GGTACGTAAGAC-GTACAGAACATAAAATTCACCGTGTGAGCCAtttt-------tgt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7222 207 -    177848 ATTAAGCATCCGAGCATCCCAGGTAGCGTGGACTCCCACAGCTCTTAAACCAAATAC---------------------CTGAC-----TGTTTGAAATTAATTAT--AAAAATGGATCAAGG------------GGTGGTTTTCACGTGGTGGCTGATGAATGCTTTCCGAGTCTTGTTTTCCTGTTCGTTTACTGT-GGTACGTAAGAC-GTACAGAACATAAAATTCACCGTGTGAGCCAtttt-------tgt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       160194 207 +    417917 ATTAAGCGTCCGAGCACCCCAGGTAGCGTGGACTCCCACAGCTCTTAAACCAAATAC---------------------CTGTC-----TGTCTGAAATTAATTAT--AAAAATGGATCAAGG------------GGTGGTTTTCACGTGGTGGCTGATGAATGCTTTCCAAGTCTTGTTTTCCTGTTCGTTTACCGT-GGTACGTAAGAA-GTACAGAACATAAAATTCACCGTGTGAGCCAtttt-------tgt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       206914 228 +  25972781 ATTAACCATCCGAGCA-CCCAGGTGGCGTGGACTCACGCGACTCTTCAACCAAATACCTGCTTCTGGAGTTGC-----CTGAC--TGACGTCTGAAATTCATGAT-AAAAAA-GGATGAAGG------------CCTGGTTTTCACATTGTGGCCGATGAATGCTGTCCCAGTCTTGTTCTCCTGTCCGTTTACCGCGGGTACGTAACACTGGGCAGAACCTAGAATTCACTTATTGCGACAttttt------tgt
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     125812 208 -    811265 ATTAAGCATCCCAGCACCCCAGGTGGCGTGGACTCACGCGGCTCTTCAACCGAATAC----------------------------------CTGAAATTCATGATAAAAAAATGGATGAAGG------------CCTGGTGTTCACGTCGTGGCTGATGAACGCTGTCCGGGTCTTGTTCTCCGGTTCGTTTACCGC-GGTACGTAACAT-GGGCAGAACCTAGAATTCACCTTTTGCGACGTTttttgtttgttt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52689 229 -    350446 ATTAACCATCCCAGCACCCCAGGTGGCGTGGACTCACGCGGCTCTTCAACCAAATACCTGCTTTTGGAGTTGCCCTGGCTGAC-----CGTCTGAAATTAATGAT-AAAAAATGGATGAAGG------------CCTGGTTTTCACGTCGTGGCTGATGAATGCTGTCCCAGTCTTGTTCTCCTGTCCGTTTACCGT--GTACGTAACAC-GGGCAGAACCTAGAATTCACCTTTTACGACAttttt------tct
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             151323 229 +  11138919 ATTAAGAATCCGAACACCCCAGGAAGCATGGACTCATGCAGATCTCAAACCAAATACCTCGTTTTTGACATGT-----CCGAAGCTTTTGGCTGAAGCTCATTAT--CAGAATGAATGGAGGCAAATGAGATGTGCCCGGCTTCACTCAGTAGCTACGTAACATTTGCTG---TTTATCCCATTGTTGGtttattga------gtaaaat-acacacaatgtacaatttaccactttaactgtttt----------
i otoGar3.GL873584             C 0 I 1398
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=29488.000000
s hg38.chrX_KI270880v1_alt      98784 21 +    284869 tcgtt--tgtttgtttttgagac
s panTro5.chrX                 224772 21 + 155549662 ttgtt--agtttgtttctgagac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7429 21 -    177848 ttgtt--agtttgtttctgagac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       160401 21 +    417917 ttgtt--tgtttgtttttgagac
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       207142 23 +  25972781 ttgtttgtttttgtttttgagac
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     126020 21 -    811265 ttgtt--tctttgtgtttgagac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        52918 21 -    350446 ttatt--tctttgtttttgagac
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             151552 1398 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I

a score=67443.000000
s hg38.chrX_KI270880v1_alt      98805 91 +    284869 ggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcggatcactgcaacc-tccgcctcct-ggttcaagcgattctcctgcc
s panTro5.chrX                 224793 91 + 155549662 ggagtctcgctatgtcgcccaggctggagtgcagtggcgtgatctcagatcactgcaacc-tccacctcct-ggttcaagcgattctcctgcc
i panTro5.chrX                 C 0 I 1065
s panPan2.chrUn_NW_014024190v1   7450 91 -    177848 ggagtctcgctatgtcgcccaggctggagtgcagtggcgtgatctcagatcactgcaacc-tccacctcct-ggttcaagcgattctcctgcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s macNem1.NW_012017243v1       207165 91 +  25972781 ggagtctcgctctgt-ggccaggctggagtgcagtggccggatctcagctcactgcaaccttctgcctccc-ggtttacgccattctcctgcc
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1        52939 92 -    350446 agagtcttgctctgtcgcccaggctggagtgtagtggcgcgatctcagctcactgcaacc-tctgcctcccgggttcccgccattctcctgcc
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             151552 1398 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041  0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e gorGor5.CYUI01015925v1       160422  0 +    417917 C

a score=7206.000000
s hg38.chrX_KI270880v1_alt      98896 8 +    284869 tcagcctc
s panTro5.chrX                 225949 8 + 155549662 tcagcctc
i panTro5.chrX                 I 1065 C 0
s panPan2.chrUn_NW_014024190v1   7541 8 -    177848 tcagcctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s macNem1.NW_012017243v1       207256 8 +  25972781 tcagcctc
i macNem1.NW_012017243v1       C 0 I 802
s manLeu1.NW_012108508v1        53031 8 -    350446 tcagcctc
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             151552 1398 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041 0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e gorGor5.CYUI01015925v1       160422 0 +    417917 C

a score=6506.000000
s hg38.chrX_KI270880v1_alt      98904 14 +    284869 ttgaggagctggga
s panTro5.chrX                 225957 14 + 155549662 ctgaggagctggga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1   7549 14 -    177848 ctgagtagctggga
i panPan2.chrUn_NW_014024190v1 C 0 M 5988
s manLeu1.NW_012108508v1        53039 14 -    350446 ccgagtagctggga
i manLeu1.NW_012108508v1       C 0 I 7102
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             151552 1398 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041  0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422  0 +    417917 C

a score=35276.000000
s hg38.chrX_KI270880v1_alt      98918 417 +    284869 ctgcagacatacaccatcacacctggccaatatttaatttttttt--gtagagacagggtcttgctctgtggcccaggctggagtgcactggtgcaatctccgctcactgcagcctccacctcctgggctcaggtgatcctcccacctcagcctcctgaggagctgggactacagacatacaccatcacacctggccAATATTTAAttttgtt--gtagggacaggctcttgctctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcagcgtccacctcctgggctcaggtgatcctcctgcctcagcttcctgaggagctgggactacagacaggtgccaccactcccagctaatttttaaatttttttgtagggacagactcttgctctgttgcccatggtgatctt
s panTro5.chrX                 225971 421 + 155549662 ctacagacatacagcatcacacctggccAATATTTAAttttttttttgtagggacaggatcttggtctgtggccgaggctggagtgcagtggtgcaatctcagctcactgcagcctccacctcctgggctcaggtgttcctccctcttcagcctcctgaggagctgggactacagacatacagcatcacacctggccaatatttAAtttttttttgtagggacaggctcttgctctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcatcctcaacctcccgggctcaggtgatcctcccgcctcagcttcctcaggagctgggactacagacaggtgccaccactcccagctaatttttaaatttttttgtagggacagactcttgctctattgcccatggtgatctt
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             151552 1398 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041   0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422   0 +    417917 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=78407.000000
s hg38.chrX_KI270880v1_alt      99335 582 +    284869 gaacacctgggcttgatgtatctgc--ccgccCAAATCCCGCCTTTCATTTACACTGCCCCCACCCCTGCCCACCCCAGGGAAGGTCTTTATTCTTAAATCTGCCTTTCTGACCTCTCTTCCCAAATGTGTGTATTTCTAACAGATCTCCGA--GTCCAGATCACGCACACCGTTTTCCATAATCCAGGGATTTGGAGCCGCCGGAGGGGTGAGGAGGGGA--GGCGGCCGTGA-CTGCTAGGTGGAGGTGGGCTCTCGTAAACGTCGTTTTACGGGCAGGTGGAAACCTTTAT-AAGCCCACAAATACTTCAAGCCTGTTCCTGCCCCTGGGGCCCTGGAGACTTCTCAGAGGACCTAACGGGACCTGGCGAAAGGCCTTCATCACCAGCCCACTAGGAACTGTTCACCGTGTGCCCGGGGCTGCGTCTGGCACGGAGGTGAACGCTGAAGCCATCCCCC------------CACC-CCCAGATCCCCAAGACGAGAGAGCGTTCCGTGAGGTCCAAATAAACGTCCCTCCTGGCACCTTCAAGGATGTGGtttttctttt----------cttttttttcgaggcagggtcttggtctgttgcccaggctg
s panTro5.chrX                 226392 592 + 155549662 gaacacctgggcttgatgtatctgc--ccgccCAAATCCCGCCTTTCATTTACACCGCCCCCACCCCCGCCCGCCCCAGGGAAGATCTTTATTCTTAAATCTGCCTTTCGGACCTCTCTTCCCAAATATGTATATTTCTAACAGATCTCCGA--GTCGAGATCACGCACACCGTTTTCCATAATCCAGGGATTTGGAGCCGCCGGAGGGGTGAGTAGGGGA--GGCGGCCGTGA-CTGCTAGGTGGAGGTGGG--CTCGTAAACGTCGTTTGACGGGCAGGTGCAAACCTTTAT-AAGCCCACAAATATTTCAAGCCTGTTCCTGCCCCTGGGGCCCTGGAGACTTCTCAGAGGAACTAACAGGGCCTGGTGAAAGGCCTTCATCACCAACCCACTAGGAACTGTTCACCATGTGCCCGGGGCTGCGTCTGGCACAGAGGTGAACGCTGAAGCCATCCCCCCACCCCCGCGTTCACC-CCCAGATCCCCAAGACAAGAGAGTGTTCCGTGAGGTCCAAATAAACGTCCCTCCTGGCACCTTCAAGGATGTGGtttttctttt----------cttttttttcgaggcagggtcttggtctgttgcccaggctg
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             152950 561 +  11138919 GAACA-CTGGGCTC--TGTACTTGCTGCTGTTTAACTTCTGACTTTAAATTGTG----ACCCACCC---TCTGCCCCAGTGAAGGTCACAGCTGTCAAATGTGGC-TCCTGCTCTCTGTTTCCAGCCCTGAGTGTTCT---CAGACCTCTGATGGACACACACACTCATATTGCTTTCCACAATCCAGGCATCTGGTGGCATGGGAGGGATGGATGGGGAGCCAGGGGCCAAGACCTGC------AAGGTAGG--CTGGCAAACGTTGCTTCAC-GGCATGTGGAAGCCTTTATGAGGCCCACACA----TTAAG-CTGTTTCTGCTCCTTGGGCCCCAGTGATGTCACAGAGGAACTGACGGCTCCTGGGGAAAGTCCCACCTTGCAGATCCGTGAGGAAGTGTCCTGCAAGCACAGAGGGCTGTGTCTGCCATGCAGAGGGA-GCTG--------CCCC------------CACTGCCGAGACCCCCAAGATATGGGGGTGTTCAGTGAAATCTGAACAAACCTCCCTCCCAGCACCTTCACAAATGCAGGTTCCAGTTTGGCCAAACAGCTGATTTTTAGAAGAAAG---TGGTTATGCTGCCATAGCTG
i otoGar3.GL873584             I 1398 I 270
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     126041   0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422   0 +    417917 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=22475.000000
s hg38.chrX_KI270880v1_alt      99917 246 +    284869 gggtgcagtggcatgatcttggctcactgcagcctccaatccttgggctcaagcgatcctcctgcctcagcctcccgagtagctgggaccacaggcatgcaccactgtgccagcctcattttgtattttctgtagagatagggtctccctatgtagcccaggctggggtgcagtggcatgatcttggctcactgcagcctccaatccttgggctcaagcgatcctcctgcctcagcctcccgagta
s panTro5.chrX                 226984 246 + 155549662 gggtgcagtggcatgatcttggctcactgcagcctccaattcttgggctcaagcgatcctcctgcctcagcctcccgagtagctgggaccacaggcatgcaccaccgtgccAGCCTCAttttgtattttctgtagagatagggtctccctatgctgcccaggctggggtgcagtggcatgatcttggctcactgcagcctgcaatcctcgggctcaagcaatcctcctgcctcagcctcccaagta
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041   0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422   0 +    417917 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     100163 166 +    284869 gctgggaccacaggcatgcaccactgtgccAGCCTCATTTCGTAttttctgtagagatagggtctccctatgtagcccaggctggggtgcagtggcatgatcttggctcactgcagcctccaatccttgggctcaagcgatcctcctgcctcagcctcccgagtag
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e panTro5.chrX                 227230   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     126041   0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422   0 +    417917 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=83262.000000
s hg38.chrX_KI270880v1_alt     100329 950 +    284869 ctgggaccacaggcatgcaccaccgtgccagcctcattttgtattttctgtagagatagggcctccctatgttgcccacgctgctctgaaactctgggctccagcgatcctcccatctcggcctcccaaagtgctgggattacaggtgtgcagtacggctcccagccCTGATGTTGGGTTTGGAGAACAAGAGGGTGATA-CGTCGCCAAATTCAAACTCACGTCCTCCTGCTTCTGAGCATGTAGGGAGCTGGTGGGCGGGGAGGTGGGTGTGGGGCTGCGGCTCTGGGCTCCCCGGGTGCCCACGCTGAGCTGTCCAGGAGGCTGACAGGGAGGACGTCCCTTCGGTATCCCCCTTTTGCCACAGAAGAGCCCGTGTGGACCCCTGAGTCCCGGACCACCGGGCAGCCAACGCCATCTTggggtctccggattgagaccccaagagagggtacctggatctcgtgcaagaaagaattcacggcaagtttgcagtgcaaaataaaagcaagtttatttagaaagtaaaatggggccgggcgcggtgtttcacgcctgtcatcccagcagtttgggaggccagggcgggtggatcacgaggtcaggagatcgagaccagcctggccagcacgatgaaactccatctctactaaaaatacaaaaaattagccggacgtggtggtgggcacctgtagtcccagctactcgggagaccgaggcaggaggatggcgtgaacccgggaggcggaggttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaagaaagaaagaattgtctatacgggtacacgtgctctgctacaaaggttcgtgataaaggattaattttcttaattactatattttgcaagaatcagtattatagttattattttttgagat
s panTro5.chrX                 227230 945 + 155549662 ctgggaccacaggcatgcaccaccgtgccagcctcattttgtattttctgtagagatagggtctccctatgttgcccacgctgctctgaaactctgggctccagcgatcctcccatctcggcctcccaaagtgctgggattacaggtgtgcactacggctcccagccCTGATGATGGGCTTGGAGAACAAGAGGGTGATAACGTCGCCAAATTCAAACTCACGTCCTCCTGCTTCTGAGCATGTTGAGAGCTGGTGGGCGGGGAGGTGGGTGTGGGGCTGCGGCTCTGGGCTCCCCAGGTGCCCACGCTGAGCTGTCCAGGAGGCTGACAGGGAGGACGTCCCTTCGGTATCCCCCTTTTGCTGCAGAAGAGCCCGTGTGGACCCCTGAGTCCCTGACCACCAGGCAGCCAAGGCCATCCTggggtctccagattgagaccccaagagggggttcctggatctcgtgcaagaaagaattcacggcaagtttgcagtgcaaaataaaagcaagtttatttagaaagtaaaatggggccgggcgcggtgtttcacgcctgtcatcccagcactttgggaggccagggcaggtggatcatgaggtcaggagatcgagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaaattagccggacgtggtggtgggcacctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcatgccgctgcactccagcctgggcgacagagcgagactgtgtctc------aaaaaaaaaagaaagaaagaattgtctatatgggtacacgtgctctgctacaagggtttgtgataaaggattaattttcttaattactatactttgcaagaatcagtattattgttattattttttgagac
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e chlSab2.chrUn_KE147541v1     126041   0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e gorGor5.CYUI01015925v1       160422   0 +    417917 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=149071.000000
s hg38.chrX_KI270880v1_alt     101279 303 +    284869 ggagtctcgctctgtcgcccaggctggagtgcggtggcgcgatctcggctcactgcaacctccacctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggcac---ccgccacacccggctaatcgttgtacttttaatagacacgggttttaccatattggccaggctggtctcgaacccctgactacctgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgaaacaccgcgcccggccgagaattggtattatgtttagagcaaacttag
s panTro5.chrX                 228175 306 + 155549662 ggagtctcgctctgtcacccaggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggcatctgccaccacgcccggttaatcgttgtacttttaatagagatgggttttaccatattggccaggctggtctcgaacccctgacttcctgatccgcccgcctcggcctcccgaagtgctgggattacaggcgtgagccactgcacccagccgagaattggtattatgtttagagcaaaattag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       160422 306 +    417917 ggagtctcgctctgtcgcccaggttggagtgcagtggcgtgatctcagctcactgcaatctccgcctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctaatcgttgtacttttaatagagacgggttttaccatattggccaggctggtctcgaacccctgacttcctgatctgcccacctcggcctcccaaagtgctgggatgacaggcgtgagccactgtgcccggccGAGAATTGGtattatgtttagagcaaaattag
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     126041 305 -    811265 ggagtctcgctctgtggcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggaccacaggcgcca-ccacttcgcccggctagtttttgtatttttaatagagacgggttttcccatattggccaggctgctctcgatctcctgacttcctgatccacccgcctcagcctcccaaagtgctgggatgacaggcgtgagccgctgcaccaggccAAGAATTAGTATTATGTTTAGAGCAAAATTAG
i chlSab2.chrUn_KE147541v1     C 0 I 78
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=8522.000000
s hg38.chrX_KI270880v1_alt     101582 35 +    284869 gaaaatgcctttgttctccagatattaagatacct
s panTro5.chrX                 228481 35 + 155549662 gaatatgcctttgttgtccagatattaggatacct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       160728 35 +    417917 gaatacgcctttgttctccagatattaggatacct
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e chlSab2.chrUn_KE147541v1     126346 78 -    811265 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=76809.000000
s hg38.chrX_KI270880v1_alt     101617 159 +    284869 ggacactcccaagtctggggctgtttagtaaatac--tttttttttttttttgag-atggagtttcgctcttgttgcccaggctggagtgcagtggtgcgatctcagctcacctcaacctccgcctcc-cgggttcaaggaattctcctgcctcagcctcccg
s panTro5.chrX                 228516 154 + 155549662 ggacactcccaagtctgggtctgtttagtaaatac-------ttttttttttgag-atggagtttcactcttgttgcccaggctggagtgcagtggtgcgatctcagctcacctcaacctcctcctcc-cgggttcaaggaattctcctgcctcagcctcccg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       160763 156 +    417917 ggacactcccaagtctgggtctgtttagtaaatac-----ttttttttttttgag-atggagtttcactcttgttgcccaggctggagtgcagtggtgcgatctcagctcacctcaacctctgcctcc-cgggttcaaggaattctcctgcctcagcctcccg
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     126424 163 -    811265 ggacactcccaagtctcagtctgtttagtaaatacttttttttcttttttttaagtacagagtttcactctcgttacccaggctggagtgcagtggtgcgatctcggctcacctcaacctccgcctcctcgggttcaagcgattctcctgcctcagcctcccg
i chlSab2.chrUn_KE147541v1     I 78 C 0
e manLeu1.NW_012108508v1        53053 7102 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=63469.000000
s hg38.chrX_KI270880v1_alt     101776 84 +    284869 agtagctgggatgacaggcgcccgccaccacgcccggctaattttgtattttttttagtagagacggggtttctccatgttggt
s panTro5.chrX                 228670 82 + 155549662 agtagctgggatgacaggtgcccaccaccacacccggctaattttgta--ttttttagtagagacggggtttctccgtgttggt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       160919 83 +    417917 agtagctgggatgacaggtgcccgccaccacacccggctcattttgta-tttttttagtagagatggggtttctccgtgttggt
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     126587 82 -    811265 agtagctgggatgacaggtg-ctgtcaccacgcctggctaatttttta-tttttttagtagagacgggatttctccacgttggc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        60155 82 -    350446 agtagctgggatgacaggtg-ctgtcaccacacctggctaattttgta-tttttttagtagagacggggtttttccatgttggt
i manLeu1.NW_012108508v1       I 7102 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       211190 1378 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=418278.000000
s hg38.chrX_KI270880v1_alt     101860 384 +    284869 caggctggcctcgaactgccaacctcatgtgatccacccacctcagccttccaacgtgctgggattacaggcgtgagcca-----ccgtgccagtaaacattatcaatttcttcctttttttt--tttttttctgagatggagtctcactctgtc-cccaggctggagtgcagtggtgccatctctgctcaccgcaacctccacctcccgggttcaagtgattctcccgcctcagcctcctgagcagctgcgattacaggca---cccgccaccacgcccggctaatttttgtgtttttagtagagacggggtttcaccgtgttggcc-------aggctggtctcgaactcctgacctc--gtgatccgcccgcctcggcctcccagagcgctgggattccag
s panTro5.chrX                 228752 383 + 155549662 caggctggcctcgaactgccaacctcatgtgatccaccggcctcggcctccgaaagtgctggaattacaggcatgagcca-----ccgtgccagtaaacattatcaatttcttcc---ttttt--tttttttctgagatggagtctcactctgtc-cccaggctggagtgcagtggtgcaatctctgctcactgcaacctccacctcctgggttcaagtcattctcctgcatcagcctcctgagtagctgcgattacaggca---cccgccaccacgcccggctaatttttgtgtttttagtagagatggagtttcaccatgttggtc-------aggctggtctcaaactcctcacctcaagcgatccacccgcctcggcctcccaaagcgctgggattccag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161002 382 +    417917 caggctggcctcgaactgccaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagcca-----ccgtgccagtaaacattatcaatttcttcc----tttt--tttttttctgagatggagtctcactctgtc-cccaggctggagtgcagtggtgcggtctcggctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgcgattacaggca---cctgccaccacgcccggctaatttttgtgtttttagtagagacggggtttcaccatgttggcc-------aggctggtctcgaactcctgacctcaagcgatccacccgcctcggcctcccaaagcgctggaattccag
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     126669 400 -    811265 caggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatgacaggtgcaagccattgagcccggccggtaaacattattaatttattcctttttttt----tttctctgagacagagtctcactctgtcacccaggctagagggcaatgactcaatctctggtcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactccaggcataagccagcaccacgcccggctaatgtttgtgtttttagtagacaccgggtttcgcggtctctcccagacgcgaggctggtcttgaactcccgacctcaagcaatccacccgcctcggcttcccaaagtgctgggattccaa
i chlSab2.chrUn_KE147541v1     C 0 I 5
s manLeu1.NW_012108508v1        60237 397 -    350446 caggctggcctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccattgagcccggccagtaaacattataaatttgttcctttttttt--tatttctctgagacagagtctcactctgtc-tccaggcgggagtgtggtggccccatctctggtcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgagattacaggt----gctgtcaccacacccggctaatttttgtgtttttagtagacacagggtttcgccgtctctaccagacgcgaggctggtcttgaactcccgacctcaagcaatccacccgcctcagcctcccaaagtgctgggattccaa
i manLeu1.NW_012108508v1       C 0 I 5
s colAng1.NW_012115411v1       212568 402 +   1230721 caggctggtctcgaactcctgacctcaggtgatgcacctgcctcggcctcccaaagtgctgggatgacaggcgtgagccattgagcccggccAGTAAACATTATTAAtttgttcctttttttttttttttctctgagacagagtctcgttcggcc-accaggctggagtgcagcggcccaatctctggtcactgcaacctccgcctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggatgacaggcacctgccaccaccgcgcccggctaatttttgtgttttt-gtagacacagggtttcgccgtctgcaccagacgcgaggctggtcttgaactcccgacctcaagcaatccacccgcctcggcttcccaaagtgctgggatCCCAA
i colAng1.NW_012115411v1       I 1378 I 38
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=5245.000000
s hg38.chrX_KI270880v1_alt     102244  9 +    284869 gcgtgag---cc
s panTro5.chrX                 229135 12 + 155549662 gcgtgagctacc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161384 12 +    417917 gcgtgagccacc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127074  9 -    811265 gtgtgag---cc
i chlSab2.chrUn_KE147541v1     I 5 I 36
s manLeu1.NW_012108508v1        60639  9 -    350446 gtgtgag---cc
i manLeu1.NW_012108508v1       I 5 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       212970 38 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=9310.000000
s hg38.chrX_KI270880v1_alt     102253 23 +    284869 ----gc----------attcgttcccttgaccgtaaa
s panTro5.chrX                 229147 33 + 155549662 ----gcgcccggcgtaattcgttcccttaaccgtaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161396 33 +    417917 ----gcgccaggcgtaattccttcccttaaccgtaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        60648 37 -    350446 ccccgcgcccggcctagtgcgttcctgtaaccgtaag
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e chlSab2.chrUn_KE147541v1     127083 36 -    811265 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       212970 38 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=8035.000000
s hg38.chrX_KI270880v1_alt     102276 11 +    284869 cgtctgcaggc
s panTro5.chrX                 229180 11 + 155549662 cgtctccaggc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161429 11 +    417917 cgtctacaggc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127119 11 -    811265 cgtctccgggc
i chlSab2.chrUn_KE147541v1     I 36 C 0
s manLeu1.NW_012108508v1        60685 11 -    350446 catctccgggc
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e colAng1.NW_012115411v1       212970 38 +   1230721 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=14.000000
s hg38.chrX_KI270880v1_alt     102287 7 +    284869 gaggaat----
s panTro5.chrX                 229191 7 + 155549662 gaggaat----
i panTro5.chrX                 C 0 I 4836
s gorGor5.CYUI01015925v1       161440 7 +    417917 aaggaat----
i gorGor5.CYUI01015925v1       C 0 I 46
s colAng1.NW_012115411v1       213008 7 +   1230721 ----catttcc
i colAng1.NW_012115411v1       I 38 C 0
e manLeu1.NW_012108508v1        60696 0 -    350446 C
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e chlSab2.chrUn_KE147541v1     127130 0 -    811265 C
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=3337.000000
s hg38.chrX_KI270880v1_alt     102294 39 +    284869 CAGCCGTCAGTC-AAGAGGGAGTCACTGCGGTTCATTCGC
s panTro5.chrX                 234034 39 + 155549662 cagccgtcagtc-aagatggagtcactgtggttcattcgc
i panTro5.chrX                 I 4836 C 0
s gorGor5.CYUI01015925v1       161493 40 +    417917 cagccgtcagtcaaagatggagtcacggtggttcattcgc
i gorGor5.CYUI01015925v1       I 46 C 0
s chlSab2.chrUn_KE147541v1     127130  6 -    811265 ------------------gaggat----------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        60696  6 -    350446 ------------------gaggaT----------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213015 39 +   1230721 cggccgtcagtc-gagatggagttgctccggttctttcgt
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e macNem1.NW_012017243v1       207264 802 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=67467.000000
s hg38.chrX_KI270880v1_alt     102333 40 +    284869 CTCTGACAACGGGTCCTCCCGGACGCCGCGTGGCTTGTTC
s panTro5.chrX                 234073 40 + 155549662 ctctgacaACGGGTCCTCCCGGACGCCACGTGGCTTGTTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161533 40 +    417917 ctctgacaACGAGTCCTCCCGGACGCCACGTGGCTTGTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208066 40 +  25972781 CTCTGACAACGGGTCCGCCCGGACAGCACGTGGCCTGATC
i macNem1.NW_012017243v1       I 802 C 0
s chlSab2.chrUn_KE147541v1     127136 40 -    811265 ctctaacAACGGGTCCGCCCGGACAGCACGTGGCCTGATC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        60702 40 -    350446 CTCTGACAACGGATCCTCCCGGACGGCGCGTGGCCTGATC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213054 40 +   1230721 ctctgacaACGGGTCCTCCCGGACAGCACGTGGCCTGATC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             153511 270 +  11138919 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=132849.000000
s hg38.chrX_KI270880v1_alt     102373 76 +    284869 TGAAGCCGGGCCGGAGACACC---GTCTGGACCCCACGCTGCTCCCCAGGGCCGCCTCCAAGAGGATGCCCCACCGCAG
s panTro5.chrX                 234113 74 + 155549662 TGAAGCCAGGCCGGAGACACC---GTCTGGACCCCACAGTGCTCCCCAGGGACGCCTCCAAAAGGAT--CCCACCCCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161573 74 +    417917 TGAAGCCGGGCCGGAGACACC---GTCTGGACCCCACCCTGCTCCCCAGGGCCGCCTCCAAAAGGAT--CCCACCCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208106 74 +  25972781 TGAAGCTGGGCTGGAGACACG---GTCTGGACCCCACGCTCCTGCCCAGGGCCGCCTCCAGCAGGAT--CCCGCCCCTG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127176 74 -    811265 TGAAGCCGGGCTGGAGACACG---GTCTGGACCCCACGCTCCTGCCCGGGGCCGCCTCCAGCCGGAT--CCTGCCCCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        60742 74 -    350446 TAAAGCCAGGCTGGAGACACG---GTCTGGACCCCACGCTCCTGCCCAGGGCCGCCTCCAGCAGGAT--CCCGCCCCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213094 74 +   1230721 TGAAGCCGGGCTGGAGAGACC---GTCTGGACCCCACGCTCCCGCCCGGGGCCGCCTCCAACAGGAT--CCCACCCCGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             153781 75 +  11138919 TAGAGCTGGGCTGGAGACACCACTGCTGGGACCCCATGCTCCT-CCGGATGCCACCTCTAA-ATGAT--GCCACCGCAG
i otoGar3.GL873584             I 270 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       142778 1964 -   1025902 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=474131.000000
s hg38.chrX_KI270880v1_alt     102449 188 +    284869 --GGAGCCGTGCAAACACCATAAATCCTGCTAATTG-CCACCTTCCCGGCAGCCAGCATCCGTGGTCTCTCTATAGTGGCCTCACGGTCTCCAGCCAGGAG-CTCGATCTTTGCTTCTGCACAAACATTACCGAGAAACGTCTGCAAACCCCGGGCGCCCGGCTCCCACATCACAGGCGCTGCGCCTCAGAA
s panTro5.chrX                 234187 187 + 155549662 --GGAGCCGTGCAAACACCATAAATCCTGCTAATTG-CTACGTTCCCGGCAGCCAGAATCCGTGGTCTCTCTATAGTGGCCTCACGGTCTCCAGCCAAGAG-CTCAATCTT-GCTTCTGGACAAATATTACCGAGAAACGTCTGCAAACCCCGGGCGCCCAGCTCCCACATCACAGGGGCTGCGTCTCAGAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161647 186 +    417917 --GGAGCCGTGCAAACACCATAAATCCTGCTAATTG-CCACGTT-CCGGCAGCCAGAATCCGTGGTCTGTCTATAGTGGCCTCACGGTCTCCAGCCAAGAG-CTCAATCTT-GCTTCTGGACAAATATTACCGAGAAACGTCTGCAAACCCCGGGCGCCCGGCTCCCACATCACAGGGGCTGCGTCTCAGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208180 189 +  25972781 --GGAGCCGTGCAAACATCATAAATCCTGCTAATTG-CCACGTTCCCCGCGGCCGGAATCCGTGGTCTGTCTACAGTGGCCTCACAGTCTCCAGCCAAGAGTTTCCATCTTCGCTTCTGGACAAATATTACCGAGAAACGTCCGCACAGCCCGGGCGCCCAGCTCCCACATCACAGGGTCTGCGTCTCAGAA
i macNem1.NW_012017243v1       C 0 I 71
s cerAty1.NW_012001098v1       144742 186 -   1025902 --GGAGCCGTGCAAACATCATAAATCCTGCTAATTGCCCACGTTCCCCGCAGCCAGAGTCCGT-GTCTGTCTACAGTGG-CTCACAGTCTCCAGCCAAGAGTTTCAATCTTTGCTTCTGACAAAATATTACCGAGAAACGTCCGCACAGCCCGGGCGCCCG--CCCCACATCACAGGGTCTGCGTCTCAGAA
i cerAty1.NW_012001098v1       I 1964 I 81
s chlSab2.chrUn_KE147541v1     127250 189 -    811265 --GGAGCCGTGCAAACATCATAAATCCTGCTAATTG-CCACGTTCCCCGCAGCCAGAATCCGTGGTCTGTCTACAGTGGCCTCACAGTCTCCAGCCAAGAGTTTCAATCTTTGCTTCTGGACAAATATTACCAAGAAACGTCCGCACAGCCCGGGCGCCCGGCTCCCACATCACAGGGTCTGCGTCTCAGAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        60816 188 -    350446 --GGAGCCGTGCAAACATCATAAATCCTGCTAATTG-CCACGTTCCCCGCGGCCAGAGTCCGTGGTCTGTCTACAGTGGCCTCACAGTCTCCAGCCAAGAG-CTCAGTCTTTGCTTCTGGACAAATATTACCGAGAAACGTCCGCACAGCCCGGGCGCCCGGCTCCCACATCACAGGGTCTGCGTCTCAGAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213168 188 +   1230721 --AGAGCCGTGCAAACATCATAAATCCTGCTAATTG-CCACGTTCCCCGCCGCCAGAATCCGTGGTCTGTCTGTAGTGGCCTCGCAGGCTCCAGCCAGGAG-TTCAGTCTTTGCTTCTGGACAAATATTACTGAGAAACGTCTGCACAGCCCGGGCGCCCGGCTCCCACATCACAGGGGCTGCGTCTCAGAA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             153856 188 +  11138919 AGAGGGCCCTACAAGCCCCATAAATTCTGCTAATTG-CTGCATCCCCCACGGCTGAGACCCGAGGTCTTTCTTTAGTGGCCTCGGAGTTTCTAGGCAACAG-CGAGACCTT-GC-TCTAGACAAATATCATTCAGGACTTCCTGAAAACTCCTGGCTTGTGGATCCTACATCACATGAGCTGTGTCTCAGAA
i otoGar3.GL873584             C 0 I 4
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=15279.000000
s hg38.chrX_KI270880v1_alt     102637 18 +    284869 -CACAACTTGTTTC-TGCCG
s panTro5.chrX                 234374 18 + 155549662 -AACAACTTGTTTC-TGCCG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161833 18 +    417917 -AACAACTTGTTTC-TGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127439 18 -    811265 -ACCCACTTGTGTG-TGCCG
i chlSab2.chrUn_KE147541v1     C 0 I 45
s manLeu1.NW_012108508v1        61004 18 -    350446 -ACCCACTTGTGTC-TGCCA
i manLeu1.NW_012108508v1       C 0 I 4
s colAng1.NW_012115411v1       213356 18 +   1230721 -ACCCACTTGTTTC-TGCCG
i colAng1.NW_012115411v1       C 0 I 44
s otoGar3.GL873584             154048 20 +  11138919 CAGAAGCCGGGGTCATGCCA
i otoGar3.GL873584             I 4 I 10
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       144928 81 -   1025902 I
e macNem1.NW_012017243v1       208369 71 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=1710.000000
s hg38.chrX_KI270880v1_alt     102655 5 +    284869 ATCCA
s panTro5.chrX                 234392 5 + 155549662 ATCCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161851 5 +    417917 ATCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        61026 5 -    350446 CGCTA
i manLeu1.NW_012108508v1       I 4 C 0
s otoGar3.GL873584             154078 5 +  11138919 ATCCT
i otoGar3.GL873584             I 10 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     127457 45 -    811265 I
e cerAty1.NW_012001098v1       144928 81 -   1025902 I
e colAng1.NW_012115411v1       213374 44 +   1230721 I
e macNem1.NW_012017243v1       208369 71 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=430.000000
s hg38.chrX_KI270880v1_alt     102660 1 +    284869 C
s panTro5.chrX                 234397 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161856 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127502 1 -    811265 C
i chlSab2.chrUn_KE147541v1     I 45 C 0
s manLeu1.NW_012108508v1        61031 1 -    350446 A
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             154083 1 +  11138919 C
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       144928 81 -   1025902 I
e colAng1.NW_012115411v1       213374 44 +   1230721 I
e macNem1.NW_012017243v1       208369 71 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=5315.000000
s hg38.chrX_KI270880v1_alt     102661  9 +    284869 ----------------------------CCCCCACCG
s panTro5.chrX                 234398  9 + 155549662 ----------------------------CCCCCACCG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161857  9 +    417917 ----------------------------CCCCCACCG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127503  9 -    811265 ----------------------------CCCCCTCCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61032  9 -    350446 ----------------------------TCCCCCCCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213418  9 +   1230721 ----------------------------TCCCCCCCA
i colAng1.NW_012115411v1       I 44 C 0
s otoGar3.GL873584             154084 37 +  11138919 CCACATCCACAAATGCCTGGATGCTCTAATCCTCCCG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       144928 81 -   1025902 I
e macNem1.NW_012017243v1       208369 71 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=21537.000000
s hg38.chrX_KI270880v1_alt     102670 13 +    284869 CCGCCTCCCCGGG
s panTro5.chrX                 234407 13 + 155549662 CCGCCTCCCCGGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161866 13 +    417917 CCGCCTCCCCGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208440 13 +  25972781 CCGCCTTCCAGGC
i macNem1.NW_012017243v1       I 71 C 0
s chlSab2.chrUn_KE147541v1     127512 13 -    811265 CCGCCTTCCAGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61041 13 -    350446 CCGCCTTCCAGGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213427 13 +   1230721 CCACCTTCCAGGC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154121 12 +  11138919 CTGCCTCCCAGA-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       144928 81 -   1025902 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=233492.000000
s hg38.chrX_KI270880v1_alt     102683 102 +    284869 CACCTCGCC----ACGCAGGACGCTCCGGGCTTCCCGTAAGAACACCCGTGTCTGTGACCTGCGGGTGGGGTCACCTCCCCGGCCTGC-ATGCCAGGTGAGGCGGGG--
s panTro5.chrX                 234420 101 + 155549662 CACCTCGCC----ACACAGGACGCTCTGGGCTTCCCATAAGAACACCCGTGTCTGTGACCTGCGGGTGGGGTCACCTCCCCGGCCTAC-ATGCAAGGTGAGGC-AGG--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161879 101 +    417917 CACCTTGCC----ACACAAGACGCTCTGGGCTTCCCGTAAAAACACCCGTGTCTGTGACCTGCGCGTGGGGTCACCTCCCCGGCCTAC-ATGCAAGGTGAGGC-AGG--
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208453 101 +  25972781 CACCTCACC----ACACAGGACGCTCCGGGCTTCCCGTAAGAACGGCCGTGCCTGTGACCTGCGGGTGGGGTCACCTCCCCAGCGTGC-TTGCCAAGCGAGGC-AGG--
i macNem1.NW_012017243v1       C 0 I 157
s cerAty1.NW_012001098v1       145009 102 -   1025902 CACCTCGCC----ACACAGGACGCTCCGGGCCTCCCGTAAGAACGGCCGTGCCTGTGACCTGCGGGTGGGGTCGCCTCCCCAGCGTGCTTTGCCAAGTGAGGC-GGG--
i cerAty1.NW_012001098v1       I 81 I 1
s chlSab2.chrUn_KE147541v1     127525 101 -    811265 CACCTGGCC----ACACAGGACGCTCCGGGCTTCCCGTAAGAACGGCCGTGCCTGCGACCTGCGGGTGGGGTCGCCTCCCCGGCGTGC-TTGCCAGGTGAGGC-AGG--
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1        61054 102 -    350446 CACCTCGCC----ACACAGGACGCTCCGGGCTTCCCGTAAGAACGGCCGTGCCTGTGACCTGCGGGTGGGGTCACCTCCCCAGCGTGCTTTGCCAAGTGAGGC-AGG--
i manLeu1.NW_012108508v1       C 0 I 2
s colAng1.NW_012115411v1       213440 101 +   1230721 CACCTCGCC----ACACCGGAGGCTCCGGGCTTCCCGTAAGAACGGCCGTGCCTGTGACCTGCGGGTGGGGTCACCTCCCCGGCACGC-TTGCAAGGTGAGGC-AGG--
i colAng1.NW_012115411v1       C 0 I 2
s otoGar3.GL873584             154133 105 +  11138919 TACCTCACCAGCTACACA-GACAGTCCCGGCTTCCTGCAAAAAGGCTGGAGTCCATTTCTTCGGGCTGGGGTCACCTGCCT-GCAGAG-ATGCACAGCCCAGA-AGGGG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=29678.000000
s hg38.chrX_KI270880v1_alt     102785 22 +    284869 GGGGCTCACCTG---GGGCT-C----------------------TCAC
s panTro5.chrX                 234521 20 + 155549662 GTGGCTCACCTG---GGG---C----------------------TCAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       161980 20 +    417917 GGGGCTCACCTG---GGG---C----------------------TCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       145112 23 -   1025902 GTGGTTTACCTG---GGGCCGC----------------------TCAC
i cerAty1.NW_012001098v1       I 1 I 16
s chlSab2.chrUn_KE147541v1     127628 23 -    811265 GTGGCTTATCTG---GGGCCGC----------------------TCAC
i chlSab2.chrUn_KE147541v1     I 2 I 11
s manLeu1.NW_012108508v1        61158 23 -    350446 GTGGTTTACCTG---GGGCCGC----------------------TCAC
i manLeu1.NW_012108508v1       I 2 I 11
s colAng1.NW_012115411v1       213543 23 +   1230721 GTGGCTTACCTG---GGGCCGC----------------------TCAC
i colAng1.NW_012115411v1       I 2 C 0
s otoGar3.GL873584             154238 48 +  11138919 GTGGCTCACCTATGTGGGCTGCAGAGGTGGGTGGCTTGGGGTTGTCAT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e macNem1.NW_012017243v1       208554 157 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=3546.000000
s hg38.chrX_KI270880v1_alt     102807 5 +    284869 CTGCC
s panTro5.chrX                 234541 5 + 155549662 CTGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162000 5 +    417917 CTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127662 5 -    811265 CTGCG
i chlSab2.chrUn_KE147541v1     I 11 C 0
s manLeu1.NW_012108508v1        61192 5 -    350446 CTGCG
i manLeu1.NW_012108508v1       I 11 C 0
s colAng1.NW_012115411v1       213566 5 +   1230721 CTGCG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154286 2 +  11138919 CT---
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       145135 16 -   1025902 I
e macNem1.NW_012017243v1       208554 157 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=127556.000000
s hg38.chrX_KI270880v1_alt     102812  96 +    284869 CGAGGGGGTCCTGCCCACGGCTCTGCGACAGAATAGAATGATCAGGGCGATGCGTGGCAGTGCCC-TCTCCCTGCCCCAGCCC---------------------------GAGGGCACCTGTTC
s panTro5.chrX                 234546 121 + 155549662 TGAGGGGGTCCTGCCCACGGCTCTGCAACAGAATAGAATAATCAGGGCGTTGTGTGGCAGTGCCT-TCTCCCTGCCCCAGCCCGAGGCACTGTGCCCACC--ACAGGAGGGAGGGCACCTGTTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162005 122 +    417917 TGAGGGGGTCCTGCCCACGGCTCTGCGACAGAATAGAATAATCAGGGCGTTGTGTGGCAGTGCCCTTCTCCCTGCCCCAGCCCGAGGCACCGTGCCCACT--GCAGGAGGGAGGGCACCTGTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       145151  95 -   1025902 TGAGGCGGTCCTGCCCACGGCTCTGCCACGGAATAGAATAATCAGGGCCTTGCGTGGCAGCTCCT-TGTCCCTGACCCAGCCCGA----------------------------GGCGCCTCCTG
i cerAty1.NW_012001098v1       I 16 C 0
s chlSab2.chrUn_KE147541v1     127667  95 -    811265 TGAGGTGGTCCCGCCCACGGCTCTGCCACGGAATGGAATAATCTGGGCACTGCGTGGCAGCTCCT-TGTCCCTGACCCAGCCCGA----------------------------GGCGCCTTCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61197  95 -    350446 TGAGGGGGTCCTGCCCACGGCTCTGCCACGGAATAGAATAATCAGGGCCTTGTGTGGCAGCACCT-GCTCCCTGACCCAGCCCGA----------------------------GGCGCCTGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213571  94 +   1230721 TGAGGGGGTCCTGCCCACGGCTGTGCCACGGAATAGAATAATCAGGGCATCGCATGGCAGCTCCT-TGTCCCTGACCCAGCCCGA----------------------------GGCGCCT-CTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154288  99 +  11138919 ------GATTCTGTCACCTG--------CAAAGTAGGACAAGGA-GTCTTTATGTAACAGCTCCT-TTTT----ACCCAGGCTGGGACTTGGTGCCTCCCTGGCAGAG-----GGCACCCCTTC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e macNem1.NW_012017243v1       208554 157 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=217238.000000
s hg38.chrX_KI270880v1_alt     102908 101 +    284869 CCCTCCTAT---CTCAGCCACTCTGCCCACGTCTGTC------------CCCACAAAACGCGGTCGGTGCAGCCCTGGGGCCCGGTCACCGTA-CCGCATCCTCCTGACAAAGACAG
s panTro5.chrX                 234667 100 + 155549662 CCCTCCTAT---CTCAGCCACTCTGCCCACGTGTGTC------------CCCACAAAACGGGGTCCGTGCAGCCTTGGGG-CCGGTCACCGTA-CTGCATCCTCCTGACAAAGCCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162127 101 +    417917 CCCTCCTAT---CTCAGCCACTCTGCCCACGTGTGTC------------CCCACAAAACGGGGTCCGTGCAGCCCTGGGG-CCGGTCACCCTACCCGCATCCTCCTGACAAAGCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208711 100 +  25972781 CCCTCCTGT---CTCACCCGCTCTGCCCACGGGTGTC------------CCCACAAAACGGGGTCCGTGCGGCGCTGGGA-TTGGTCACCGTA-GCATATCCTCCTGACAAAGACAG
i macNem1.NW_012017243v1       I 157 I 25
s cerAty1.NW_012001098v1       145246 100 -   1025902 CCCTCCTGT---CTCACCCGCTCTGCCCACAGGTGCC------------CCCACACAACGGGGTCCGTGCAGCGCTGGGA-CCGGTCACCGTG-GCATATCCTCCTGACAGAGACAG
i cerAty1.NW_012001098v1       C 0 I 1960
s chlSab2.chrUn_KE147541v1     127762  99 -    811265 CCCTCCTGT---CTCACCCGCTCTGCCCACAGGTGCC------------CCCACAGAAC-GGGTCCGTGCAGCGCTGGGA-CCGGTCGCCGTA-GCATATCCTCCTGACAGAGACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61292 100 -    350446 CCCTCCTGT---CTCACCCGCTCTGCCCACAGGTGCC------------CCCACACAACGGGGTCCGTGCAGCGCTGGGA-CCGGTCACTGTG-GCATATCCTCCTGACAGAGACAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213665 100 +   1230721 CCCTCCTGT---CTCACCCGCTCTGCCCACGGGCGTC------------CCCACAAAACGGGGTCCCTGCGGCGCTGGGA-CCGGTCACCGTA-CCGTATGCTCCTGACAAAGACAG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154387 115 +  11138919 CTCCCCTGGGGAGGCATCTTCTCTGCCCCCTCCTGCCACACTCACTGTGCTCCCAAGATGGGGATTTTGGGCTGTGTGGG-CAGGTCACAGGG-TTGAATCCTCCAGATAGAGCCAG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=26586.000000
s hg38.chrX_KI270880v1_alt     103009 12 +    284869 AAAGAAACCGGC
s panTro5.chrX                 234767 12 + 155549662 AAAGAAACCGGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162228 12 +    417917 AAAGAAACCGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       208836 12 +  25972781 ACAGAAACCGGC
i macNem1.NW_012017243v1       I 25 I 4575
s chlSab2.chrUn_KE147541v1     127861 12 -    811265 AAAGAAAGCGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61392 12 -    350446 AAAGAAACCGGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213765 12 +   1230721 AAAGAAACCGGC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154502 12 +  11138919 AAAGAAACCCAC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=55764.000000
s hg38.chrX_KI270880v1_alt     103021 61 +    284869 TCTTTGATTCTAACATT-AAAAAAAAAA------GGGCTGCCTTCTGCTTGCAAAAGAAATGC-ACGCA
s panTro5.chrX                 234779 61 + 155549662 TCTTTGATTTTAACATT-AAAAAAAAAA------GGGCTGCCTTCTGCTTGCAAAAGAAATGC-ACACA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162240 62 +    417917 TCTTTGATTTTAACATTAAAAAAAAAAA------GGGCTGCTTTCTACTTGCAAAAGAAATGC-ACACA
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127873 68 -    811265 TGTTCGATTTTAAAAATTTAAAAAAAAAAAAAGGGAGCTCCCTTCTGCAGGCAAATGAAAGGC-GTACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61404 63 -    350446 GGTTCGATTTTAAAAATTAAAAAAAAAA------GGGCTCCCATCTGCTGGCAAATGAAAGGCAATACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213777 65 +   1230721 CGTTCGATTTTAAAAATAAAAAAAAAAACAA---GGGCTCCCTTCGGCTGGCAAAAGAGAGGC-ATACA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154514 64 +  11138919 ACTTGCCTTTTAAAAAT-AATGAGATGCTCC---AGGCTCCTTTCTGATTGCAAAAGAAATTC-AGATA
i otoGar3.GL873584             C 0 I 112
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=175162.000000
s hg38.chrX_KI270880v1_alt     103082 148 +    284869 GGCTGCTGGCAGAAAGTTCTGGAAGATGATAAAGG-AAAAAAATAAATTAATTCGAGAAAACTTTGAGACGCCTAACAGCACAAATACCCTCAGTCTTTAGAGAACAGCTGGGG--ATACACATATTCTGGCTCATTTCCCCATGGAACtt
s panTro5.chrX                 234840 145 + 155549662 GGCTGCTGGCAGAAAGTTCTGGAAGATGATAAAGG--AAAAAATAAATTAATTCGAGAAAACTTTGAGACACCTAACGGCACAAATACCCTCAGTCTTTAGAGAACAGTTGGGG--ATACAC--ATTCTAGCTCATTTCCCCATGGAACtt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162302 145 +    417917 GGCTGCTGGCAGAAAGTTCTGGAAGATGATAAAGG-AAAAAAATAAATTAGTTCGAGAAAACTTTGAGACACCTAACAGCACAAATA-CCTCAGTCTTTAGAGAACAGTTGGGG--ATACAC--ATTCTAGCTCATTTCCCCATGGAACtt
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     127941 149 -    811265 GGCTCCTGGCAGAAAATTCTGGAACGCGATAAAGGAAAAAAAATAAATGAGTTCGAGAAGACTTTGAGAAGCGTCGCAGCCCAAACAGCCTCGGTCTCTAGAGAACGGTTGGGAATATACAC--GTTCTGGCTCGTCTCCCCGCGGAACtt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61467 148 -    350446 GGCTCCTGGCAGAAAATTCTGGAACGCGATAAAGG-AAAAAAATAAATTAGTTCGAGAAAACTTTGAGAAGCGTCACGGCACAAACAGCCTCAGTCTCCAGAGAATGGTTGGGAATATACAC--GTTCTGGCTCGTCTCCCCGCGGAACtt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213842 146 +   1230721 GGCTCCTGGCAGAAAATTCTGGAACATGATACAGG-AAAAAAAGAAATTCATTCGAGAAAACTTTGAGAAACGTAACGGCACAAACAGCCTCAGTCTGTAGAGAACGGTGGGGG--ATACAT--ATTCCGGCTCGTTTCCCCGTGGAACtt
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             154690 137 +  11138919 GACTCCTTACAGGGAATTTTGGAAAA-GATAACGG--GAAAAATATAGCA-TCTGAGAAAAACTTGAAAAACCTGAAGGTGTAAATAGCCTCAGCCTCTGGGG--TGGTTGGGA----AGAG--ATTCTGCCTC--TTCCTCCTGATCCTT
i otoGar3.GL873584             I 112 I 1523
e saiBol1.JH378345             159566 14883 +    465904 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=63377.000000
s hg38.chrX_KI270880v1_alt     103230 66 +    284869 ttat-----ttttat-tttttgagat-gagtctctctgtgtcgccgaggctggagtgcaatggtgcgatctca
s panTro5.chrX                 234985 66 + 155549662 ttat-----ttttat-tttttgagat-gagtctctctgtgttgccgaggctggagtgcaatggtgtgatctca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       162447 66 +    417917 ttat-----ttttat-tttttgagat-gagtctctctctgttgccgaggctggagtgcaatggtgtgatctca
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     128090 73 -    811265 ttgtttgatttttagttttttgagacagagtctcgctctgttgcccaggctggagggcggtggcccgatctcg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61615 72 -    350446 ttatttta-ttttatttttttgagatggagtctcgctctgtcgccgaggctggagggcggtggcccgatctcg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       213988 72 +   1230721 ttattttatttttag-tttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcg
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=9303.000000
s hg38.chrX_KI270880v1_alt     103296 11 +    284869 gctcactgcaa
s gorGor5.CYUI01015925v1       162513 11 +    417917 gctcactgcaa
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     128163 11 -    811265 gctcactgcag
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61687 11 -    350446 gctcactacag
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       214060 11 +   1230721 gctcactgcaa
i colAng1.NW_012115411v1       C 0 M 8630
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=75749.000000
s hg38.chrX_KI270880v1_alt     103307 165 +    284869 cctccgcctcccgggttcaagcgatcctcctgcctcagcctccc-aatagctgagacgacaggcgcctgccaccacgcccggctaatttttgtatatttactagagacggggtttcaccgtgttggccaggctggtctcaagctcctgaccccaggtgatccgccc
s gorGor5.CYUI01015925v1       162524 164 +    417917 cctccgtctcccgggttcaagcgattctcctgcctcagcctccc-aatagctgagattacaggcacctgcca-catgcccagctaatttttgtgtatttactagagacggggtttcaccgtgttggccaggctggtctcaagctcctgacctcaggtgatctgccc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     128174 166 -    811265 cctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgcccggctcatttttgtatatttattagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgccc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        61698 165 -    350446 cttccgccgccc-ggttgaagtgattctcctgcctcagcctcctgagtagctgggataacaggcacctgccaccacacccgggtaatttttgtatttttagtagagacagggtttcatcatgttggtcaggcaggtctcgaactcccgacctcaggtgatccgccc
i manLeu1.NW_012108508v1       C 0 I 1479
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=5991.000000
s hg38.chrX_KI270880v1_alt     103472 26 +    284869 gcctcggcctcccagagtgctgggat
s gorGor5.CYUI01015925v1       162688 25 +    417917 gcctcagcct-ccaaagtgctgggat
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     128340 26 -    811265 gcctcggcctcccaaagtgctgggat
i chlSab2.chrUn_KE147541v1     C 0 I 378
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=2578.000000
s hg38.chrX_KI270880v1_alt     103498 32 +    284869 tatgggtgggagccaccgcgcccggccCCTct
s gorGor5.CYUI01015925v1       162713 32 +    417917 tatgggggtgagccaccgcgcccggccTCTCT
i gorGor5.CYUI01015925v1       C 0 I 1460
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     128366 378 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     103530 14 +    284869 tccttccttccctt
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     128366 378 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e gorGor5.CYUI01015925v1       162745 1460 +    417917 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=8061.000000
s hg38.chrX_KI270880v1_alt     103544 132 +    284869 ccttccttcccttccttccttcccttccttccttcccttcc-ttccttcccttccttccttcccttccttcc-ttccttccctccctt--ccctccctcccttacctcccttccctccctcctttcctttccttcc
s gorGor5.CYUI01015925v1       164205 133 +    417917 ccttcttttccttccttcc--ccctcccttccttcccctcccttccttcccctccttccttcccttcctttcgttccttctctttcttttccttcccttcctt-ccttccttccttcccttccttccattccttcc
i gorGor5.CYUI01015925v1       I 1460 I 26
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     128366 378 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     103676 25 +    284869 cttcctttccttccttccttctttc
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     128366 378 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e gorGor5.CYUI01015925v1       164338 26 +    417917 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=69027.000000
s hg38.chrX_KI270880v1_alt     103701 993 +    284869 tttttccttttctttttgagatgtagtctcactctgtggcccaggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagt--agctgggacgacagacgcccgccaccatgcccggctaatttttgtgtttttttaggtagacatgaggtttcaccacatcggccaggccggtctcaagctcctgacctccagtgatccgcccgcctccgcctcccaaagtgctgggatgacaggcgtgagccaccgcgcTTGTCCTGCTCTGTAAATTTTGTTTTGggccaggcgtggtggctcacacctgcagtcccagcactacgggaggccgaggcacgagggtcgctggaggccacgagtttgagtcccccagcctgggtaacgtaacgagaccg-tgtctttaaaaatcataaaagacagatcagctgggcgtagtgacacgggtgcctgtcgccccggctcctgaagaggctgaggtgggaggatcgctttagcccaggagttggaggctgtagcgagctgtgatctcaccaccgcactccagcctgggcgacagagcaagatcttgtctcgaaaacaaaacaaaacaaaacacaaaaaTTTAAAAAACAGATTGAGAACCCTTGGCCCCCACCTCTTACCAGCTCGGTCACAATTGCAAACCAGAggccgggcacggtggctcacgcctgtcatcccagcgcttcgggaggccgaggcgggtggatca--tgaggtcaggagctcgagaacatcctggccaacatggagaaaccccatctctactgaaaatacaaacttagccgggcgtggtggctcacgcctgtcatccgagcactttgggaggccgaggcgggcggatcacgaggtcaggagctcaaaagcagcctgaccaacatggagaaagcctgtctctactaaaaataccaaCTTAgccgggcatggtggtgcacg
s gorGor5.CYUI01015925v1       164364 916 +    417917 ttttcccttttctttttgagatgtagtctcactctgtcacccagcctggagtgcagtggtgtgatctcggctcactgcaagctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtgcagctgggattacaggcacacaccaccacgcc-ggctaatttttgtgtttttttaggtagacatgaggtttcaccacatcggccaggctggtctcaagctcctgacctcaagtgatccgcctgcctcaacctcccaaagtgctgggatgacaggcgtgagccaccgcgcTTGTCGTGCTCTGTAAATTTTGTTTTGggccaggcgtggtggctcacacctgcaatcccagctctacgggaggccaaggcacgagggtcgctggaggccaggagtttgagtcccc-aggctgggtaacacaacgagaccggcatctctaaaaatgataaaagacaaattagctgggcgtagtgacacgggagcctgtcaccc-ggctcctgaagaggctgaggtgggaggatcgctttagctcaggagctggaggctgtagcgagctgtgatctcaccaccgcactccagcctgggcgacagagcaagatgccatctcaaaaataata-aaaacaaGGca------------------------------------------------------------------------------ggagcggtggctcacgcctgtcatccccgcactttgggaggccgaggtgggtggatcacttgaagtcaggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccaggtgcagtggttcatgcctgtcatcccagcgcttcgggaggccaaggtgggtggatcAtgaggtcaggagctcgagaccagcctgaccaagatggagaaaccccatctctactaaaaataccaaCTTAgccgggcgtggtggtgggtg
i gorGor5.CYUI01015925v1       I 26 C 0
e manLeu1.NW_012108508v1        61863 1479 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     128366 378 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=115212.000000
s hg38.chrX_KI270880v1_alt     104694 269 +    284869 cctgtcatcccagcgcttcgggaggccgaggcgggcggatca--tgaggtagggagctcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaa-attagccgggcgtggtggtggcaggtgcctgcaatcccagttactcaggagaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcacccctgcactccaggctgggcaac-agagcaaaaactctgtctcaaaaa
s gorGor5.CYUI01015925v1       165280 266 +    417917 cctgtcatcccagcgctttgggaggcc-aggtgggtggatcacatgaggtcaggagctcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaa-attagctgggtgtggtggtggcaggtgcctgcaatcccagctact---gggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagctgagatcacgccattgcactccaggctgtgcaac-agagcaaaaactctgtctcaaaa-
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     128744 266 -    811265 cctgtcatcccagcactttgggaggccgaggcaggtgcatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaa-attacctgggcgt---gggggcaggtgcctgtcgtcccagctactc--gggaggctgaggcaggagaatcgctggaacgcgggaggcggaggttgccgtgagccgagatcgggccaccgcactccagcctgggcgac-agagtgacacgtctgtctcaaaaa
i chlSab2.chrUn_KE147541v1     I 378 I 18
s manLeu1.NW_012108508v1        63342 267 -    350446 cctgtcatcccagcactttgggaggccgaggcaggtgcatcacctgaggtcgggagttcgagaccagcccggccaacatggagaaaccccgtctctactaaaaatacaaacattagccgggcgt----ggggcaggtgcctgtcgacccagctactc--gggaggctgaggcaggagaatcgctggaacccgggaggcggaggctgccgtgagccgagattgggccactgcactccagcctgggcaacaagagcaacacgtctgtctcagaaa
i manLeu1.NW_012108508v1       I 1479 I 1
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=-279.000000
s hg38.chrX_KI270880v1_alt     104963 30 +    284869 taatataataataataataataataataat--
s gorGor5.CYUI01015925v1       165546 15 +    417917 --------------taata-taataataat--
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        63610 17 -    350446 --------------taaca-taggattaaaaa
i manLeu1.NW_012108508v1       I 1 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129010 18 -    811265 I
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=6542.000000
s hg38.chrX_KI270880v1_alt     104993 16 +    284869 aataataaAAACAACT
s gorGor5.CYUI01015925v1       165561 16 +    417917 aataataaaaaCAACT
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     129028 16 -    811265 gataaTAAAAGCCATT
i chlSab2.chrUn_KE147541v1     I 18 C 0
s manLeu1.NW_012108508v1        63627 16 -    350446 gataataaaAGCCATT
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             154827 1523 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=56744.000000
s hg38.chrX_KI270880v1_alt     105009 131 +    284869 GTTTTCATGCTGCAG--ACAGCACACAGGCCAGGACGTCAGGGTCTCGTGAGGGGCCGTCGGAGAACGTCTAAGGGA--------------------CGTCCC--------TGCATTCCTGGCTGGAGGTCCTGCGCCAGCGCCCTCCTTGTGAGAACACT
s gorGor5.CYUI01015925v1       165577 131 +    417917 GTTTTCATGCTGCAG--ACAGCACACAGGCCAGGACGTCAGGGTGTCGTGAGGGGCCGTCGGAGAACGTCTAAGGGA--------------------CGTCCC--------TGCATTCCTGGCTGGAGGTCCTGCGCCAGCGGCCTCCGTGTGAGAAAACT
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     129044 152 -    811265 GTTTTCATGCTGCAGACACAGCCCACAGGCCAGGGCATCAGCGTCTTGTGAGGGGTT-CCAGGGAACGTCTAAGGGAGACACAGGCTGGTCCAGCCGCCTCCC--------ACCCTGCCTGGCCGGGCGTCCTGAGCCAGCCGCCTCAGTGGGAGAAAATC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        63643 150 -    350446 GTTTTCATGCTGCAG--ACAGCCCACAGGCCAGGGCATCAGCGTCTTGTGAGGGGTT-ACAGGGAACGTCTAAGGGAGACACAGGCTGGTCCAGCTGCCTCCC--------ACCCTGCCTGGCCGGGCGTCCTGAGCCAACCGCCTCAATGGGAGAAAATC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             156350 123 +  11138919 GTTTTCATGCTGCAG------GACATAGGCCAGGGCTTCAAGGTGTGGAGAGGGGCA-GTTGGGAAGGTCT-GGGGAGGCAGAGGCCC---------CCACCCATGCAGTAAGTCTTCCCGGCTGGGGG-CCTGAGGGAGC--------------------
i otoGar3.GL873584             I 1523 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panTro5.chrX                 235051   0 + 155549662 C
e cerAty1.NW_012001098v1       145346 1960 -   1025902 I
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e macNem1.NW_012017243v1       208848 4575 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=12001.000000
s hg38.chrX_KI270880v1_alt     105140 7 +    284869 TTCGCTC
s gorGor5.CYUI01015925v1       165708 7 +    417917 TTCGCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213423 7 +  25972781 TTCACTC
i macNem1.NW_012017243v1       I 4575 C 0
s cerAty1.NW_012001098v1       147306 7 -   1025902 TTCACTC
i cerAty1.NW_012001098v1       I 1960 C 0
s chlSab2.chrUn_KE147541v1     129196 7 -    811265 TTCACTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        63793 7 -    350446 TTCACTC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             156473 7 +  11138919 TTCACCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panTro5.chrX                 235051 0 + 155549662 C
e colAng1.NW_012115411v1       214071 8630 +   1230721 M
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=750554.000000
s hg38.chrX_KI270880v1_alt     105147 455 +    284869 TGCAAACTCTCAGAGCCCCCACCTGCTCCCGCCTCCCGTCTGTCCTGGTTCTTGGG-ACCCCGGAGCCTTCTCTGTCCAGACCTCCCAGGTCCTGACGGGAATCCGGATaaact---------ccttggggcgaaggtgttaacggcagg----gcccc---tgtctaatgtatttcgccacccagataaaatgagtgttttcacagctgccgttaa-tttct-------taccctgaggaagaaaggaaggactttgaGGCACCTGCGGCCGGGTTGGGGTGGGGCAGGGGGATTTCTGGACG-CGG--ACGGCGTGTgggga----gttcctggggtccccagagccacaccacgtaggtggcagcc-ggctccgtcctgc---------------aaagccCCGGCTTCGGTGAAAGATTTATCACCTGCTCGGCCTCGGAGACGGGGAAGAAAAACACAGCCTGGAAGTGGTCCTGGCTGATGGACGGGCCCCTGGGGA
s gorGor5.CYUI01015925v1       165715 454 +    417917 TGCAAACTCTCAGAGCCCCCACCTGCTCCCGCCTCCCGTCTGTCCTGGTTCTTGGGGACCCCGGAGCCttctctgtccagacctcccaggtcctgacgggaatccggataaact---------cattggggcgaaggtgttaacggcagg------ccc---tgtctaatgtatttcgccacccagataaaatgagtgttttcacagctgccgttaa-tttct-------taccctgaggaagaaaggaaggactttgaggcacctgcggccgggttggggtgcggcagggggatttctggacg-cgg--acggcgtgtgggga----gttcctggggtccctagggccacaccacgtaggtggcagct-ggctccgtcctgc---------------aaagccccggcTTCGGTGAGAGATTTATCACCTGCTCGGCCTCGGAGACGGGGAAGAAAAACACAGCCTGGAAGTGGTCCTGGCTGACGGACGGGCCCCTGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213430 447 +  25972781 TGAAAACTCTCAGAGCCGCCACCTGCTCCCCGCTCCCGTCTGCCCTGGTTCTCGGG--CCCCGGAGCCCGCCCTGTCCAGACCTCCCAGGCCCTGTGGGGAATCCCGATAAAC----------------GGGGACAGCGTTCACGGCAGGTCCCTCCCC---Tgcctcatgtatttcgccacctggataaaatgagtgttttcacagctgcctttca-tttttagttttttaccccgaggaaggaacgaagcagttcgaggcacctgcggccgggttggggcgaggcagcgggatttcgggacg-ggg--acggcg---gggag----gttccgggg-------gagccacaccacgtaggtggcggcc-ggctccgGCCTG----------------GAGGCCGCGACGTTGCTGAAAGATTTATCACCTGCTCAGCCTCGGAGACGGGGAAGAAAAACACAGACTGGAAATGGTTCTGGCTGACGGACGGACCCCCGGGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       147313 445 -   1025902 TGAAAACTCTCAGAGCCGCCACCTGCTCCCAGCTCCCGTCTGCCCTGGTTCTCGGG--CCCCGGAGCCCGCCCTGTCCAGACCTCCCAGGCCCTGTCAGGAATCCCGATAAAC----------------GGGGACGGCGTTCACGGCAGG--CCCCCCC---TGTCTCATGTATTTCGCCACCCGGATAAAATGAGTGTTTTCACAGCTGCCGTTCA-TTTTTTTAGTTTTACCCCGAGGAAGGAACGAAGGAGTTCGAGGCACCTGCGGCCAGGTTGGGGCGAGGCAGGGGGATTTCGGGACG-GGG--ACGGCA---GGGAG----GTTCCGGGG-------GAGCCACACCACGTAGGTGGTGGCC-GGCTCCGGCCTG----------------GAGGCCCCGACGTTGCTGAAAGATTTATCACCTGCTCAGCCTCGGAGACGGGGAAGAAAAACACAGACTGGAAGTGGTTCTGGCTGACGGAAGGACCCCCGGGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     129203 452 -    811265 TGAAAACTCTCAGAGCCGCCACGTGCTCCCGGCGCCCGTCTGCCCTGGTTCTCGGG--CTCCGGAGCCCGCCCTGTCCAGACCTCCCAGGCCCTGTCGGGGATCCCGATAAAC----------------GGGGACGGCGTTCGCGGCAGG--CCCCCCGCCCCGTCTCCTGTATTTCGCCACCCGGATAAAATGAGTGTTTTCACAGCTGCCGTTCATTTTTTTTAGTTTGACCCCGAGGAAGGCACGAAGGAGTTCGAGGCACCTGCGGCCGGGTTGGGGCGAGGCCGCGGGATTTCGGGACG-GGGACACGGTG---GGGAG----GTTCCAGGG-------GAGCCACACCACGTAGGTGGCGGCC-GGCTCGGGCCTGC---------------GAGGCCCCGACGTTGCTGAAAGATTTATCACCTGCTCCGCCTCGGAGACGGGGAAGAAAAACACAGACTGGAAGTGGTCCTGGCTGACGGACGGACCCCCGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        63800 445 -    350446 TGAAAACTCTCAGAGCCGCCACCTGCTCCCCGCTCCCGTCTGCCCTGGTTCTCAGG--CCCCGGAGCCCGCCCTGTCCAGACCTCCCAGGCCCTGTCAGGAATCCCGATAAAC----------------GGGGACGGCGTTCACGGCAGG--CCCCCCA---CGTCTCATGTATTTCGCCACCCGGATAAAATGAGTGTTTTCACAGCTGCCGTTCA-TTTTTTTAGTTTTACACCGAGGAAGGAACGAAGGAGTTCGAGGCACCTGCGGCCGGGTTGGGGCGAGGCAGCGGGATTTCGGGACG-GGG--ACGGCG---GGGAG----GTTCCGGGG-------GAGCCACACCACGTAGGTGGCGGCC-GGCTCCGGCCTG----------------GAGGCCCCGACGTTGCTGAAAGATTTATCACCTGCTCAGCCTCGGAGACGGGGAAGAAAAACAGAGACTGGAAGTGGTTCTGGCTGACGGACGGACCCCCGGGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       222745 405 +   1230721 TGCAAACCCTCAGAGCCCGCACCTGCTCCCCGCTCCCGTCTGTCCTGGTTCTTGGG--ACCTGGAGCCTGCCCTGTCCAGACCTCCCAGGCCC---------------------------------------------------------------------TGTCTCATGCATTTCGCCACCCGGATAGAACGAGTGTTTTCACAGCTGCCGTTCA-TTTTT--ATTTGTACCCCGAGGAAGGAACGGAGGACGTGGAGGCACCTGCGGCCGGGTTGGGGCGGGGCAGCGGGGTTTCTGGATGCGGG--ACGGCG---GGGAG----GGTCCGGGGGTCCCCAGAGCCACACCACGTAGGTGGCGGCCGGGCTCCGACCTGC---------------GAGGCCCCCACGTTGCTGAGAGATTTATCGCCTGCCCGGCCTCGGAGACGGGGAAGAAAAACACAGCCTGGAAGTGGTTCTGGCTGACGGACGCACCCCTGGGGA
i colAng1.NW_012115411v1       M 8630 I 72
s otoGar3.GL873584             156480 436 +  11138919 TGCAAACTCCCAGAACC--CACCCACTGCCA--------CTGCCTTGGGTTCTGGG---------------------------------GCCCTGCCAGGGATCCTGATAAACTTGCTGTGGCTGCTGGGGCTGAGGTGTTAATGGCTGG-----CCCA---CGTCTAATGTATTTCACCACCCAGGTAAAATGAGTGTATTGACAGCTGCCTTTAA-TGTTT------TTACCCTGAAGAAGAAAGCAAGGCCtttcaggtacctgtaggtcggctggga-gggaaatcatggtttctggatg-ctg--gtgata---gagggtggtgttcctgggatccctagagacacgtcacataggtggctgtc-ggctctgacttgcaaggggctggccctgCAGGCCCCAGCTCTGGAGAAAGATTTATCACGTGCATGGCCTAGGAGACCGGGAAGGAAAACACAGGCTGGAAGTGGTTCTGGCACAGGGACAGGCCCTGGGGA-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panTro5.chrX                 235051   0 + 155549662 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=31552.000000
s hg38.chrX_KI270880v1_alt     105602 30 +    284869 GCTGTCCCCAAATGCGCGTCTTCTTTCTCC
s gorGor5.CYUI01015925v1       166169 30 +    417917 GCTGTCCCCAAATGCGCGTCTTCTTTCTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213877 30 +  25972781 ACCGTCCCCAAATACCCCTTTTCTTTCTCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       147758 30 -   1025902 ACCGTCCCCAAATACCCCTTTTCTTTCTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     129655 30 -    811265 ACCGTCCCCAAATACCCCTTCTCTTTCTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        64245 30 -    350446 ACCGTCCCCAAATACCCCTTTTCTTTCTCC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             156916 20 +  11138919 GCC--TCCCAGGTATGCTGTTT--------
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e panTro5.chrX                 235051  0 + 155549662 C
e colAng1.NW_012115411v1       223150 72 +   1230721 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=21155.000000
s hg38.chrX_KI270880v1_alt     105632 23 +    284869 TTTCTGTCACAGCCTCCCGGCCC
s gorGor5.CYUI01015925v1       166199 23 +    417917 TTTCTGTCACAGCCTCCCGGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213907 10 +  25972781 GTTCGGTCG-------------C
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       147788 10 -   1025902 GTTCGGTCA-------------C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     129685 23 -    811265 GTTCGGTCACAGCCTCCAGGCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        64275 23 -    350446 ATTCGGTCACAGCCTCCAGGCCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       223222 23 +   1230721 TTTCCGTCACGGCCTCCCGGCCC
i colAng1.NW_012115411v1       I 72 C 0
s otoGar3.GL873584             156936 23 +  11138919 TGTCCACCATGGCCTCCAGGCCC
i otoGar3.GL873584             C 0 I 1534
e saiBol1.JH378345             159566 14883 +    465904 I
e panTro5.chrX                 235051  0 + 155549662 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=22448.000000
s hg38.chrX_KI270880v1_alt     105655 13 +    284869 TGCCCTGGCTGAG
s gorGor5.CYUI01015925v1       166222 13 +    417917 TGCTCTGGCTGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213917 13 +  25972781 TGCCCGGGCTGAG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       147798 13 -   1025902 TGCCCGGGCTGAG
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1     129708 13 -    811265 TGCCCGGGCTGAG
i chlSab2.chrUn_KE147541v1     C 0 I 6449
s manLeu1.NW_012108508v1        64298 13 -    350446 TGCCGGGGCTGAG
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1       223245 13 +   1230721 TGCCCGGGCTGAG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=41008.000000
s hg38.chrX_KI270880v1_alt     105668 39 +    284869 TGGGGCTTTCAGTGAACGCTTGTTGAGTGTCCACGGAGC
s gorGor5.CYUI01015925v1       166235 39 +    417917 TGGGGCTTTCAGTGAACGCTTGTTGAGTGTCCACGGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213931 36 +  25972781 -TGGGCCTC--GTGGATGCTTGTTGAGTGTCCACGGAGC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1       147812 36 -   1025902 -TGGGCCTC--GTGGATGCTTGTTGAGTGTCCACGGAGC
i cerAty1.NW_012001098v1       I 1 C 0
s manLeu1.NW_012108508v1        64312 36 -    350446 -TGGGCCTC--GTGGATGCTTGTTGAGTGTCCAcggagc
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1       223258 37 +   1230721 TCGGGCTTC--GTGGATATTTGTTGAGTGTCCACGGAGC
i colAng1.NW_012115411v1       C 0 I 48
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=21066.000000
s hg38.chrX_KI270880v1_alt     105707 39 +    284869 TGTGAGTGCT-------GTTCCGGGTGCTGGGTACGTGGTGGGGTG
s gorGor5.CYUI01015925v1       166274 39 +    417917 TCTGAGTGCT-------GTTCCAGGGACTGGGTATGTGGTGGGGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       213967 39 +  25972781 CCGGGATGCT-------GTGCCGGGTGCCGGGTGGGTGAGGGGGTG
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1       147848 39 -   1025902 CCGGGATGCT-------GTGCCGGGTGCCGGGTGGGTGAGGGGGTG
i cerAty1.NW_012001098v1       C 0 I 2
s manLeu1.NW_012108508v1        64348 45 -    350446 ccgggatgctgtgccaggtgccaggtgccgggtgGGTGA-GGGGTG
i manLeu1.NW_012108508v1       C 0 I 2
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       223295 48 +   1230721 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=92825.000000
s hg38.chrX_KI270880v1_alt     105746 81 +    284869 TGTGAGGTTCCCTCCTCTCTAGTGCAGAGATCAGGAGTGAGTAGACAAAGAAAATAGCATCTAACTGCTGCTTGTGATGAG
s gorGor5.CYUI01015925v1       166313 81 +    417917 TGTGAGGTTCCCTTCTCTCTAGTGCAGAGATCAGGAGTGAGTAGACAAAGAAAATAGCATCTAACTGCTGCTTGTGATGAG
i gorGor5.CYUI01015925v1       C 0 I 15
s macNem1.NW_012017243v1       214008 79 +  25972781 TGTGAGGTTCCCTCGTCTCTAGTGGAGAGATCGG--GAGAGTAGACAAAGAAAATAGTATCTAACTGCTGCCTGTGATGAG
i macNem1.NW_012017243v1       I 2 C 0
s cerAty1.NW_012001098v1       147889 79 -   1025902 TGTGAGGTTCCCTCGTCTCTAGTGGAGAGATCCG--GAGAGTAGACAAAGAAAATAGTATCTAACTGCTGCCTGTGATGAG
i cerAty1.NW_012001098v1       I 2 I 383
s manLeu1.NW_012108508v1        64395 79 -    350446 TGTGAGGTTCCCTCGTCTCTAGTGGAGAGATCGG--GAGAGTAGACAAAGAAAATAGTATCTAACTGCTGCCTGTGATGGG
i manLeu1.NW_012108508v1       I 2 C 0
s colAng1.NW_012115411v1       223343 81 +   1230721 TGTGAAGTTCCCTCCTGTCCAGTGGAGAGATCGGGAGAGAGTAGACAAAGAAAATAGTATCGAACTGCTGCTTGGGATGAC
i colAng1.NW_012115411v1       I 48 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=-8.000000
s hg38.chrX_KI270880v1_alt     105827 5 +    284869 --ttttt
s gorGor5.CYUI01015925v1       166409 5 +    417917 --ttttt
i gorGor5.CYUI01015925v1       I 15 C 0
s macNem1.NW_012017243v1       214087 5 +  25972781 GGttt--
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1        64474 5 -    350446 GGttt--
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       223424 3 +   1230721 --TTT--
i colAng1.NW_012115411v1       C 0 I 512
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051 0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=57020.000000
s hg38.chrX_KI270880v1_alt     105832 154 +    284869 tttttttttttttttgagacagagtcttgctcttgttacccaggctggagagcaatggcgtgatcttggctcacggcaacctctg-cttccgggttcaaggcatcctcctgcctcagtctcccgagtagctgggagtacaggcacctgccaccac
s gorGor5.CYUI01015925v1       166414 153 +    417917 tttttttttttttttgagacagagtctcgctgtcatta-ctaggctggagagcaatggcgtgatcttggctcacggcaacctctg-cttctgggttcaaggcatcctcctgcctcagtctcccgagtagctgggatgacaggcagctgccaccat
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       214092 150 +  25972781 gc----tttttttttaagagggagtctcgctct-gtcgcccaggctggagtgcggtggtgcaatctcagctcactgcagcctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggacgacacgcacctgccaccac
i macNem1.NW_012017243v1       C 0 I 7220
s manLeu1.NW_012108508v1        64479 153 -    350446 gctctttttttttttaagaaggagtctcgctct-gttgcccaggctggagtg-agtggcgcgatttcggctcagtgcagcctccgcctcccgggttccagcgattctcctgcctcaacctcccgagtagctgggactacaggcacctgccaccag
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=17586.000000
s hg38.chrX_KI270880v1_alt     105986 85 +    284869 gcctgggtaa-ttttgtatttttagtagagacggggtttcaccatgttggtcagcctggtctggaactcctgacctcaggtgatcc
s gorGor5.CYUI01015925v1       166567 84 +    417917 gcctgggtaa-gtttgtatttttagtagagacggggtttcactatgttggccaggctggtctcaaactcctgacctcaggtgat-c
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        64632 86 -    350446 gcctggctcatttttgtatatttattagagacaggattttaccatgttggccaggctggtttcgaactcctgacctcaggtgatcc
i manLeu1.NW_012108508v1       C 0 I 4494
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=29308.000000
s hg38.chrX_KI270880v1_alt     106071 427 +    284869 atccatctcggcctcttaaagtgctgggattacaggcgtgagccgccatgtctggcctttttcttttttttttttttttttttgagatggtcttgctctcattgcccaggctggagtgcaatggtgcaatcttggctcactgcaacttctgcttccgggttcaaggcatcctcctgcctcagcctcccgagtagctgggattacacgtgtgcaccaccatgcccggctaattttgtatttttagtagagactgggtttcactatcttagttaggctggtctcgaactcccaacctcatgatctgcccgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgcacctggccTAtttttttttttttttttgagacagagtcttgctcttactgtg---taggctggag-tacagtgggcgaa
s gorGor5.CYUI01015925v1       166651 415 +    417917 gcccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgtgcgtggcc---------tttttttttttttttttgagatggtcttgctctcattgcccaggctggagtgcaatggtgcaatcttggctcactgcaacttctgctcccgggttcaagcgatcctcctgcctcagcctcccgagtagctgggattagagg-atgtgccaccacgcccggctaattttgta-ttttagtagagatggggtttcactgtgttagcca-gctggtctc-aactcctgacctcatgatctgcccccctcggcctcccaaagtgctgggatgacaggcgtgagccaccgctcccggGC---ttttttttttttttttgagatggaatcttgctcttattgtgccccaggctggagctgcagtgggcaaa
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1   7563 5988 -    177848 M

a score=51.000000
s hg38.chrX_KI270880v1_alt     106498 4 +    284869 ctcg-
s panPan2.chrUn_NW_014024190v1  13698 4 -    177848 ctca-
i panPan2.chrUn_NW_014024190v1 M 5988 C 0
s gorGor5.CYUI01015925v1       167066 5 +    417917 ctcgg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 235051 0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=95587.000000
s hg38.chrX_KI270880v1_alt     106502 217 +    284869 gctcactgcaacctctg-ctccggggttcaaggcatcctcctgcctcagcctcccgagt--agctgggattacaggcgcccaccaccactcctgggtaattttgta-ttgttagtagagactgggtttcactatgttagtcaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcc-caaagtgctgcgatgacaggcgtgagccac
s panTro5.chrX                 235051 217 + 155549662 gctcactgcaacctctg-ctcccgggttgaagcaatcctcctgcctcagcctcccgagt--agctgggattacaggcgtgtgccaccacgcctgggtaattttgta-tttttagtagagactgggtttcactatcttagttaggctggtctcgagcttctgacctcaggtgatccatccgtctcggcctct-taaagtgctgggatgacaggcatgagccac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  13702 218 -    177848 gctcactgcaacctctg-ctcccgggttgaagcaatcctcctgcctcagcctcccgagt--agctgggattacaggcgtgtgccaccacgcctgggtaattttgtattttttagtagagactgggtttcactatcttagtcaggctggtctcgagcttctgacctcaggtgatccatccgtctcggcctct-taaagtgctgggatgacaggcatgagccac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       167071 219 +    417917 gctcactgcaacctctgcctcccgggttcaagtggctcctctgcctcagcctcctgaagtaagctgggattacaggcatgctccaccactcccggctaattttgta-tttttagtagagatggggtttcactgtgttggccaggctggtctcgatctcctgagctcaggtgatccatccg-ctcagcctctccaaagtg-tgggatgacaggcgtgagccac
i gorGor5.CYUI01015925v1       C 0 I 445
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=43440.000000
s hg38.chrX_KI270880v1_alt     106719 186 +    284869 cgtgcgtggcctt----------------tttttttttttttttgagatggagtcttgctctcattgcccaggctagagtgcaatgggcgaactcggctcactgcaacctccac-tcccgggttcaagggatcctcctgcctcagcctcctgagtagctggaatggcaggtgcatgtcaccatgtttggctaatttttttttt
s panTro5.chrX                 235268 203 + 155549662 cgcatctggccTTGCCttttttttttttttttttttttttttttgagatggagtcttgctcttattgcccaggctggagtgcaatgggtgaactcggctcactgcaacctctgcctcccgggttcaagtgatcctcctgcctcagcctcccgagtagctggaattacaggcacccgccaccacgcctggctaattttgtattt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  13920 197 -    177848 cgcatctggccTG------ttccttcttttttttttttttttttgagatggagtcttgctcttattgcccaggctggagtgcaatgggtgaactcggctcactgcaacctctgcctcctgggttcaagtgatcctcctgcctcagcctcccgagtagctggaattacaggcacccgccaccacgcctggctaattttgtattt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       223427 512 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       167290 445 +    417917 I

a score=67139.000000
s hg38.chrX_KI270880v1_alt     106905 187 +    284869 tttttttcataaagacagagtcttgctaggtttcccaggctggtctcaaactcctggcctcaagtcatcctcccacctcagcctcccgaagtgctgggattccaggcgtgagccaccgtacctggccCCTTCAGCATTTTTAAAATATCATTACCCCTTCAAAGACACCTCCAGGAGCAGCCAAAGT
s panTro5.chrX                 235471 182 + 155549662 tt-----agtagagatggggtttcactatgttagtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattccaggcatgagccaccatatctggccCCTGCAGCATTTTTAAAATATCATTACCCCTTCAAAGACACCTCCAGGAGCAGCCAAAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  14117 182 -    177848 tt-----agtagagatggggtttcactatgttagtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattccaggcgtgagccaccatacctggccCCTGCAGCATTTTTAAAATATCATTACCCCTTCAAAGACACCTCCAGGAGCAGCCAAAGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s colAng1.NW_012115411v1       223939 156 +   1230721 tttttctcataaagacagagtcttgctaggttgcccaggccgctctcaaactcctgggctcaagccatcctcccgcctcggtctcctaaagcgctgagattacaggcgtgagccgcagtacctgtccCTTTCTGCATTTTTAAAAGATCATTACCC-------------------------------
i colAng1.NW_012115411v1       I 512 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       167290 445 +    417917 I

a score=56216.000000
s hg38.chrX_KI270880v1_alt     107092 73 +    284869 TGGTACCCTTGTTATT--CCCCATCTCAACACCCCGTGAATTCATTTCTCCAAAAGAACTCATCACAAGCAggcc
s panTro5.chrX                 235653 73 + 155549662 TGGTACCCGTGTTATT--CCCCATCTCAACACCCTGTGAATTCATTTCTCCAAAAGAACTCATCACAAGCAggcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  14299 73 -    177848 TGGTACCCGTGTTATT--CCCCATCTCAACACCCTGTGAATTCATTTCTCCAAAAGAACTCATCACAAGCAggcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       167735 75 +    417917 TGGTACCCGTGTTATTCCCCCCATCTCAGCACCCCATGAATTCATTTCTCCAGAAGAACTCATCACAAGCAggcc
i gorGor5.CYUI01015925v1       I 445 C 0
s colAng1.NW_012115411v1       224095 65 +   1230721 --------TTGTTATT--CCCCATCCCAACACCCCGTGAATTCATTGATCCCAAACAACTCATCACAAGCAggcc
i colAng1.NW_012115411v1       C 0 I 2240
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=526980.000000
s hg38.chrX_KI270880v1_alt     107165 996 +    284869 acgtgcggtggctcacaccagtcatcccagcactttgggaggacaaggcgggtggatcatctgaggtcaagagttcgagaccagcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagccgggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcgtgccact-gccctccagcctgggcaacagagcgagactccgtctcc--aaaaaaaaaaaaaaGTgctgaaaagaagcaagaaggaggagctggctgtgcgcagggaaaagcaatgcaggaagaaggatcagcgtgtgcaaagactctgagctgggaaaaacctctgtgtattccgagaaccgagacagggaggcaggcttagggtggagaggaggatggcaaggtggagggttgaaggGTTTCCCAGCAGCCTGCAGGGCTGATTGGGAGCTCAGATACTCCATGACAAGGACAAAGGGAAGGGGTCTGTATGCAGCTGTGTCTCCGCTCTCTTTCTTGCTCAGAGCATGGAGACCTCGAGTCCAGCTTCctttgcgtgcgtaggggcctctctgggtgatggagccctcccgagtggtaggttgggagaaccacagaattaaccgcaccctccagagtctctcccaaccaagggctgtcgacggtgggtgcataaataccTGGGAGGggccgggtgcggtggttcacgcctgtcatcccagcactttgggaggacaaggcgggcggatcacctgaggtcaagagttcgagaccagcctggtcaacatggtgcaacccccccgcctctgctaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtaatcccagctagtcgagaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagatggcaccactgcactcc
s panTro5.chrX                 235726 993 + 155549662 acgtgcggtggctcacaccagtcatcccagcactttgggaggccaaggcgggtggatcatctgaggtcaagagttcgagaccagcctggccaacaaggtgcaaccccctctctgctaaaaatacaaaaaattagctgggcctggtggcgggcgcctgtagtcccagctactcgggaggcggaggcgggagaatggcatgaacccgggaggcggagcttgcagtgagccgagatcgcgccact-gcactccagcctgggcaacagagcgagactccgtctcc--aaaaaaaaaaaaaaGTgctgaaaagaagcacgaaggaggagctggctgtgcgcagggaaaagcaatgcaggaagaaggatcagcgtgtgcaaagactctgagctgggaaaaacctctgtgtattccaagaaccaagacagggaggcaggcttagggtggagaggaggatggcaaggtggagggttgaaggGTTGCCCAGCAGCCTGCAGGGCTGATTGGGAGCTCAGATATTCCATGACAAGGACAAAGGGAAGGGGTCTGTATGCAGCTGTGTCTCCGCTCTCTTTCTTGCTCAGAGCATGGAGACCTCGAGTCCAGCTTCctttgcatgcgtaggggcctctctgggtgatggagccctcctgagtggtaggttgggagaaccacagaattaaccgcaccctccagagtctctctcaaccaagggctgtcgacggtgggtgcataaataccTGGGAGGggccgggtgcggtggttcacgcctgtcatcccagcactttgggaggacaaggcgggtggatcacctgaggtcaagagttcgagaccagcctggccaacatggtgcaaccctc---tctctgctaaaaatacaaaaaattagctgagtgtggtggtgggagcctgtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgtgccattgcactcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  14372 990 -    177848 acgtgcggtggctcacaccagtcatcccagcactttgggaggccaaggcgggtggatcatctgaggtcaagagttcgagaccagcctggccaacaaggtgcaaccccctctctgctaaaaatacaaaaaattagctgggcctggtggcgggcgcctgtagtcccagctactcgggaggcggaggcgggagaatggcatgaacccgggaggcggagcttgcagtgagccgagatcgcgccact-gcactccagcctgggcaacagagcgagactctgtctcc-----aaaaaaaaaaaGTgctgaaaagaagcacgaaggaggagctggctgtgcgcagggaaaagcaatgcaggaagaaggatcagcgtgtgcaaagactctgagctgggaaaaacctctgtgtattccaagaaccaagacagggaggcaggcttagggtggagaggaggatggcaaggtggagggttgaaggGTTGCCCAGCAGCCTGCAGGGCTGATTGGGAGCTCAGATATTCCATGACAAGGACAAAGGGAAGGGGTCTGTATGCAGCTGTGTCTCCGCTCTCTTTCTTGCTCAGAGCATGGAGACCTCGAGTCCAGCTTCctttgcatgcgtaggggcctctctgggtgatggagccctcctgagtggtaggttgggagaaccacagaattaaccgcaccctccagagtctctctcaaccaagggctgtcgacggtgggtgcataaataccTGGGAGGggccgggtgcggtggttcacgcctgtcatcccagcactttgggaggacaaggcgggtggatcacctgaggtcaagagttcgagaccagcctggccaacatggtgcaaccctc---tctctgctaaaaatacaaaaaattagctgggtgtggtggtgggagcctgtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgtgccattgcactcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       167810 994 +    417917 acgtgcggtggctcacacctgtcat-ccagcactttgggaggacaaggcgggtggatcacctgaggtcaagagatcgagaccatcctggccaacaaggtgcaaccccctctctgctaaaaatacaaaaaattagccaggc-tggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggaggttgcagtgagccgagatcgcgccaccggcactccagcctgggc-acagagcgagactccgtctccaaaaaaaaaaaaaaaaGTGCTGAAAAGAAGCaagaaggaggagctggctgtgctcagggaaaagcaatgcaggaagaaggatcagcgtgtgcaaagactgtgagctgggaaaaacctctgtgtattccgagaaccgagacagggaggcaggcttagggtggagaggaggatggcaaggtggagggttgaaggGTTGCCCAGCAGCCTGCAGGGCTGATTGGGAGCTCAGATATTCCATGACAAGGACAAAGGGAAGGGGTCTGTATGCAGCTGTGTCTCCGCTCTCTTTCTTGCTCAGAGCATGGAGACCTCGAGTCCAGCTTCctttgcgtgcgta-gggcctctctgggtgatggagccctcccgagtggtaggttgggagaaccacagaattaaccgcaccctccagagtctctctcaaccaagggctgtcgacagcgggtgcataaataccTGGGAGGggccgggtgcggtggttcacgcctgtcatcccagcaatttgggaggacaaggcgggtggatcgcctgaggtcaagagttcgagaccagcctggccaacatggtgcaatccccac-cccttgctaaaaatacaaaaaattagctgggtgtggtggtgggagcccgtaatctcagctactcgagaggctgaggcaggagaatggcgtgaacccgggaggcggaggttgcagtgagccgagattgcaccactgcactcc
i gorGor5.CYUI01015925v1       C 0 I 178
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=9087.000000
s hg38.chrX_KI270880v1_alt     108161 32 +    284869 agcctgggtgagagaaagaaactgtctaaaat
s panTro5.chrX                 236719 32 + 155549662 agcctgggtgagagaaagaaactgtctaaaat
i panTro5.chrX                 C 0 I 130
s panPan2.chrUn_NW_014024190v1  15362 32 -    177848 agcctgggtgagagaaagaaactgtctaaaat
i panPan2.chrUn_NW_014024190v1 C 0 I 130
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       168804 178 +    417917 I

a score=64013.000000
s hg38.chrX_KI270880v1_alt     108193 230 +    284869 aaacagggaaaaCACCTCTGGGGCTTATGTCTTTCCCGCCTGCATCCGATGAACCTTAGGTGACCGCTGGGGACGGTACTGAGGGTTCCAGGCAGAGGAAAGCCACATCTGCATGCAGAGAAAACTCCAGTGGGGACAGAGGGGGTGC---------------------------------ATCGTGTTTAGAAGCCACGTGGGGGGTGGGGGGGCAGGTGTGTCTCATCGCACACGTGTGAACGGAGTGCCGGGGGCCCCTC
s panTro5.chrX                 236881 263 + 155549662 AAACAGGGAAAACACCTCTGGGGCTTATGTCTTTCCCGCCTGCATCCGATGAGCCTTAGGTGACCGCTGGGGATGGTACTGAGGGTTCCGGGCAGATGAAAGCCACATCTGCATGCAGAGAAAACTCCAGTGGGGTCAGAGGTGGTGCCGCTAGCAGGTGCACCCTCTCAGAGGCTGCCGCATCGTGTTTAGAAGCCAGGTGGGGGGCGGGGGGGCAGGTGTGTCTCATCGCACACGTGTGAACGGAGTGCCGGGGGCCCCTC
i panTro5.chrX                 I 130 C 0
s panPan2.chrUn_NW_014024190v1  15524 263 -    177848 AAACAGGGAAAACACCTCTGGGGCTTATGTCTTTCCCGCCTGCATCCGATGAGCCTTAGGTGACCGCTGGGGACGGTACTGAGGGTTCCGGGCAGATGAAAGCCACATCTGCATGCAGAGAAAACTCCAGTGGGGTCAGAGGTGGTGCCGCTAGCAGGTGCACCCTCTCAGAGGCTGCAGCATCGTGTTTAGAAGCCAGGTGGGGGGCGGGGGGGCAGGTGTGTCTCATCGCACACGTGTGAACGGAGTGCCGGGGGCCCCTC
i panPan2.chrUn_NW_014024190v1 I 130 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       168804 178 +    417917 I

a score=44837.000000
s hg38.chrX_KI270880v1_alt     108423 86 +    284869 TTCTCCTGAGCCCCCAAAGGCACGAGCCGGTGGGTCTCGGGAGTTGT-GGGGCGATTCCTGGAGGTGGCTCTGTGCAAAGTGTTGTC
s panTro5.chrX                 237144 86 + 155549662 TTCTCCTGAGCCCCCAAAGGCACGAGCCGGTGGGTCTCGGGAGTTGT-GGGGCGATTCCTGGAGGGGGCTCTGTGCAAAGTGTTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  15787 86 -    177848 TTCTCCTGAGCCCCCAAAGGCACGAGCCGGTGGGTCTCGGGAGTTGT-GGGGCGATTCCTGGAGGGGGCTCTGTGCAAAGTGTTGTC
i panPan2.chrUn_NW_014024190v1 C 0 M 189
s gorGor5.CYUI01015925v1       168982 86 +    417917 TTCTCCTGAGCCCCCAAAGGCACGAG-CGGTGGGTCTCGGGAGTGGTGGGGGCGATTCCTGCAGGTGGCTCTGTGCAAAGTGTTGTC
i gorGor5.CYUI01015925v1       I 178 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=89812.000000
s hg38.chrX_KI270880v1_alt     108509 390 +    284869 ATATCAGCCAGGAAAACACCCCCTTGCCACAGCCTCAAGTCAACCCAATCTCGTCTGAAAGGTTT-GGATGGAGGTGGGGGGGTCCCTGGCTTCCGTCGCTGGAGCGGTGGCCGCAGGGCTGGTCTTCACTGTCATCGTGATGTCACCATCGTCCTCACGTTGGGTGTCTCCCTGGATTCTCGGCTCTCCAGGGAGGCGGCGACGGCCCATCCCACCAGCTGCCCACGGAGGCGGGGTCCCCGGGATGCAGGCTTGACCTCAGAGGAAAACCCACCTGAGCCATTCTAGGGGGAGGGGACACCAGGACCCCCCAAAGGCCTGGTCGGCTGAGGTCATGGTTCATCCCGGGGTTGGGGGAGGGGACACCAGGACCCCCCAAAGGCCTGGTCG
s panTro5.chrX                 237230 382 + 155549662 ATATCAGCCAGGAAAACACCCCCTTGCCACAGCCTCAAGTCAACCCAATCTCGTCTGAAAGGCTT-GGATGGAGGT--------TTCTGGCTTCCATCGCTGGAGCGGTGGCCGCAGGGCTGGTCTTCACCGTCATCATGATGTCACCATCATCCTCACGTTGGGTGTCTCCCTGGATTCTCAGCTCTCCAGGGAGGCGGTGACGGCCCATCCCACCAGGTGCCCACGGAGGCAGGGTCCCCGGGATGCAGGCTTGACCTCAGAAGGAAACCCACCTGAGCCACTCTAGGGGGAGGGGACACAAGGACCCCCCAAAGGCCTGGTCGGCTGAGGTCATGGTTTATCCCGGGGTTGGGGGAGGGGACACCAGGACCCCCCAAAGGCCTGGTTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       169068 373 +    417917 ATATCAG-CAGGAAAACACCCCCTTGCCACATCCTCAAGTCAACCCAATCTCGTCTGAAAGGCTTGGGATGGAGGTGGGGGG--TCCTGGCTTCCGTCGCTGGAGCGGTGGCCGCAGGGCTGGTCTTCACTGTCATCGTGATGTCACCATCGTCCTCACGTTGGGTGTCTCCCTGGATTCTC-GCTCTCCAGGGAGGTGGTGATGG-CCATCCCACCAGCTGCCCACGGAGGCGGGGTCCCCGGGATGCAGGCTTGACCTCAGA-GGAAACCCA-CTGAGCCA-TCTAGGGGAGGGACACA----GACCCCC--AAAGCCTGGTCGGCTGAGGTCAT-GTTTATCCCGG---TTGGGGAGGGGACACCAGGACCCCCCAAAGGCCTGGTCG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=6434.000000
s hg38.chrX_KI270880v1_alt     108899 81 +    284869 GCTGAGGTCATGGTTCATCCCGGGGTTGGGGGAGGGGACACCAGGACCCCCCAAAGGCCTGGTCGGCTGAGGTCATGGTTT
s gorGor5.CYUI01015925v1       169441 79 +    417917 GCTGAGGTCATGGTTTATCCC-GGGTTTGGGGAGGGGACACCAGGA-CCCCCAAAGGCCTGGTCGGCTGAGGTCATGGTTT
i gorGor5.CYUI01015925v1       C 0 I 414
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 237612  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     108980 49 +    284869 ATCCCGGGGTTGGGGGAGGGGACACCAGGACCCCCCAAAGGCCCGGTCA
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 237612  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       169520 414 +    417917 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=7365.000000
s hg38.chrX_KI270880v1_alt     109029 108 +    284869 GCTGAGGTCATGGTTCATCCCGGGGTTGGAGCAGAACGGGCCGTGGAGGATG---------------------------------------------------------------GGCTCAGGGAGTGTTTGTTCATGGCGTGAATTCACACGGAATcttcctgcctccct
s panTro5.chrX                 237612 171 + 155549662 GCTGAGGTCATGGTTTATCCCGGGGTTGGAGCAGAACGGGCCatggaggatggagaacgggccgtggaggatggagaacgggccgtggaggatggagaacgggccgtggaggatggGCTCAGGGAGTGTTTGTTCACGGCGTGAATTCACACGGAATcttcctccttccct
i panTro5.chrX                 C 0 I 225
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       169520 414 +    417917 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     109137 1 +    284869 c
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e panTro5.chrX                 237783 225 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       169520 414 +    417917 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=764.000000
s hg38.chrX_KI270880v1_alt     109138 8 +    284869 cttccttc
s panTro5.chrX                 238008 8 + 155549662 cttccttc
i panTro5.chrX                 I 225 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       169520 414 +    417917 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=18431.000000
s hg38.chrX_KI270880v1_alt     109146  95 +    284869 cttctttcctccctccctccgtcctttcgttccctccttccttccaatttcctccctctctccctccctgcct----------------TTCTTTGTGGAC-AGCCTGGCAT
s panTro5.chrX                 238016 111 + 155549662 tttcctccctccctccctccctcctttccttccctccttccttccaatttcctccctccctccctccctccctgcctttcttccttcctttcttcctggac-agcctggcat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       169934 102 +    417917 cttctttcctccctccctccctcctttcctt-cctccttcctt-caatttcctccctccct--cgccctgcct------cttccttcctttcttcctGGACAAGCCTGGCAT
i gorGor5.CYUI01015925v1       I 414 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1  15873 189 -    177848 M

a score=354085.000000
s hg38.chrX_KI270880v1_alt     109241 738 +    284869 CTGCACcgtgtcctggct-gagcctcctgccagctctgcggcctcgttgaggggggcggggtgcgtgtctcaccatctttgcacctcagcttccccatctgtgacgcagggacggcaacaggcacccctcgaggtCACCCCTCCAGCATTTGTTTACAGCTGTCTCACATGAACTTAGATCCATGGAAGAGCGTCACCCTGACTCGTCAACCTGCAAAAACGGCCCAGGACAGAGAGGGGGGCCCTTGGGA--TGGTGGCGGCCGGGACCCGAGGCTGTTGTCCGGTCGTAGAGCCTTAGAGGCTGTTGGCGGTGTAGACGCGGGTCCCAGGCTGCAAGCTGCCTCTCTCCTCTGCCTCAGGCtcttcttttctatttatttatttttaagacagggtctcgctctgtcacccaggctggagtgcagtggtgccatctcggctcacagcagcctccaactcctgggctcaagccgtcctcccgcctcagcctcccgagcagcggagaccacaggcatgtgccgggctaattttctaatgttttgtagagatgacgtctttgctacgttg-cccaggctggtgttgaactcctgggctcaaggcctcctctcgctctggtctcccaaagtgctgggattagaggtgtgagccaccgcgtctggccAAGACGTCTTTT-GGGGGGGACATAATTCTCAACCAAATTGCctctgtctctccttctcactctctctctctccacaca
s panTro5.chrX                 238127 727 + 155549662 ctgcaccgtgtcctg-ct-gagcctcctgccagctctgtggcctcgttggggggggggg----catgtctcagcatctttgcacctcagcttccccatctgtgaggcagggacggcagcagGCATCCCTCGAGGTCACCCCTCCAGCATTTGTTTACAGCTTTCTCACATGAACTTAGATCCATGGAAAAGCGTCACCCTGACTCGTCAACCTGCAAAAATGGCCCAGGACAGAGAGGGGGGCCCTTGGGA--TGGTGGCAGCCGGGACCCGAGGCTGTTGTCCGGTCGTAGAGCCTTAGAGGCTGTTGGCGGTGTAGACGCAGGTCCCAGGCTGCAAGCTGCCTGTCTCCTCTGCCTCATGCtcttcttttctatttatttatttttaagacagggtctcactctgtcacccaggctggagtgcagtggtgcgatcttggctcaccgcagcttccaactcctgggctcaagccgtcctcccgcctcagcctcccgagcagcggagaccacaggcatgtgcccggctaattttctaatgttttgtagagatgacctctttgctaccttg-cccaggctggtgttgaactcctgggctcaaggcctcctctcgccctggtctcccaaagtgctgggattagaggtgtgagccaccacgtctggccAACATGTCTTTT-GGGGGGGACATAATTCTCAACCAAATTGCctctgtctctccttctcactctctctctct------a
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  16062 726 -    177848 CTGCACcgtgtcctcgctcgagcctcctgccagctctgtggccgtnttgggggggg-------catgtctcagcatctttgcacctcagcttccccatctgtgaggcagggaCGGCAGCAGGCATCCCTCGAGGTCACCCCTCCAGCATTTGTTTACAGCTTTCTCACATGAACTTAGATCCATGGAAAAGCGTCACCCTGACTCGTCAACCTGCAAAAATGGCCCAGGACAGAGAGGGGGGCCCTTGGGA--TGGTGGCAGCCGGGACCCGAGGCTGTTGTCCGGTCGTAGAGCCTTAGAGGCTGTTGGCGGTGTAGACGCAGGTCCCAGGCTGCAAGCTGCCTGTCTCCTCTGCCTCATGCtcttcttttctatttatttatttttaagacagggtctcactctgtcacccaggctggagtgcagtggtgcgatcttggctcaccgcagcttccaactcctgggctcaagccgtcctcccgcctcagcctcccgagcagcggagaccacaggcatgtgcccggctaattttctaatgttttgtagagatgacgtctttgctaccttg-cccaggctggtgttgaactcctgggctcaaggcctcctctcgccctggtctcccaaagtgctgggattagaggtgtgagccaccacgtctggccAACATGTCTTTTGGGGGGGGACATAATTCTCAACCAAATTGCctctgtctctccttctcactctctctctct-------
i panPan2.chrUn_NW_014024190v1 M 189 C 0
s gorGor5.CYUI01015925v1       170036 713 +    417917 CTGCACcgtgtcctggct-gagcctcctgccagctctgtggcctcg--ggcgggggcggggtgc-tgtctcaccatctttgcaccccagcttccccatctgtgaggcagggaCGGCA-CAGGCA-CCCTCGAGGTCACCCCTCCAGCATTTGTTTACAGCTCTCTCACATGAACTTAGATCCACGGAAAAGCGTCACCCTGACTCGTC-ACCTGCAAAAACGGCCCAGGACAGAGAGGGGGGCCCTTGGGATCTGGT----GCCGGGA-CCGAGGCTGTTGTCCGGTCGTAGAGCCTTAGAGGTTGTCGGCGGTGTAGACGGGGGT-CCAGGCTGCAAGCTGCCTCTCTCCTCTGCTCCAGGCtcttcttttctatttatttatttttaagaccagggttcgctctgtcacccaggctggagtgcagtggtgc-atcttggctcaccgcagcctccaact-ctgggctcaagcc-tcctcccgcctcagcctcccgggcagcggagaccacaggcatgtgcccggctaattttctaatgttttgtagagatga-gtctttgccacgttgccccaggctggcgttgaactcctgggctcaaggcctcctct-gccctggtctcccaaagtgctgggattagaggtgtgagcca-cgcgtctggccAAGACGTCTTTT-GGGGGGTACATAATTCTCAACCAAATTGCCTCTGTCTCTCTTTC---ATCTCTC-CTCT------a
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        64718 4494 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=15924.000000
s hg38.chrX_KI270880v1_alt     109979 29 +    284869 ca-cacacacacacacacacacac----acacaG
s panTro5.chrX                 238854 29 + 155549662 ca-cacacacacacacacacacac----acacaG
i panTro5.chrX                 C 0 I 155
s panPan2.chrUn_NW_014024190v1  16788 24 -    177848 ------acacacacacacacacac----acacaG
i panPan2.chrUn_NW_014024190v1 C 0 I 155
s gorGor5.CYUI01015925v1       170749 33 +    417917 caccacacacacacaca-acacacagcaacacaG
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        69212 29 -    350446 ca-cacacacactcacactcacac----acacaT
i manLeu1.NW_012108508v1       I 4494 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=78704.000000
s hg38.chrX_KI270880v1_alt     110008 115 +    284869 CTtgtatgtatatacgcatttatacaggtgtggaggtgtttgtgcatatatagatatatatgatatatac----gtatatttaAGCCATTAGAACATGATTTCCAT--TGCTAATATTTCA
s panTro5.chrX                 239038 115 + 155549662 CTtgtatgtatatacgcatttatacaggtgtggaggtgtttgtgcatatatagctatatatgatatatac----gtatatttaAACCATTAGAACATGATTTCCAT--TGCTAATATTTCA
i panTro5.chrX                 I 155 C 0
s panPan2.chrUn_NW_014024190v1  16967 115 -    177848 CTTGTATGTATATACACATTTATACAGGTGTGGAGGTGTTTGTGCatatatagctatatatgatatatac----gtatatttaAACCATTAGAACATGATTTCCAT--TGCTAATATTTCA
i panPan2.chrUn_NW_014024190v1 I 155 C 0
s gorGor5.CYUI01015925v1       170782 113 +    417917 CTTGTATGTATATATGCATTTATA-AGGTGTGGAGGTATTTGTGCATATAGAGATATATATGATCTAGAT-----TATATTTAAAGCATTAGAAGATGATTTTGAT--GGCTGATATTTCA
i gorGor5.CYUI01015925v1       C 0 I 847
s manLeu1.NW_012108508v1        69241 121 -    350446 TTTGtatgtatagatgcatttatatagctgtagaggtatttgtgcatctatagatatagatgagatatatatgtgtgtatTCAAACCATTACAATATGATTTTGATGGTGATAATATTTCA
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=9186.000000
s hg38.chrX_KI270880v1_alt     110123 17 +    284869 GTGAATATCTCTTTTCT
s panTro5.chrX                 239153 17 + 155549662 GTGAATATCTCTTTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17082 17 -    177848 GTGAATATCTCTTTTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s manLeu1.NW_012108508v1        69362 17 -    350446 GTGAATATCTCTCTTCT
i manLeu1.NW_012108508v1       C 0 I 6185
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       170895 847 +    417917 I

a score=1642.000000
s hg38.chrX_KI270880v1_alt     110140 11 +    284869 AGCTCTA----ACTC
s panTro5.chrX                 239170 15 + 155549662 ATCTCTCTCTCACTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17099 15 -    177848 ATCTCTCTCTCACTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       147968 383 -   1025902 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       170895 847 +    417917 I

a score=14355.000000
s hg38.chrX_KI270880v1_alt     110151 37 +    284869 cacacacacacacagacacacagacacaTCCCTTGta
s panTro5.chrX                 239185 33 + 155549662 cacacacacacacagatacacacacac----CTTGta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17114 33 -    177848 cacacacacacacagatacacacacac----CTTGta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s cerAty1.NW_012001098v1       148351 37 -   1025902 cacacacacacacacacgcacacacacaACCCTCGTA
i cerAty1.NW_012001098v1       I 383 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       170895 847 +    417917 I

a score=35590.000000
s hg38.chrX_KI270880v1_alt     110188 48 +    284869 tgtatatatgcatttatacaggtgtggaggtatttgtgcatatagaga
s panTro5.chrX                 239218 48 + 155549662 tgtatatatgcatttatataggtgtagaggtatttgtgcatatagaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17147 48 -    177848 tgtatatatgcatttatataggtgtagaggtatttgtgcatatagaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       171742 47 +    417917 TGTATATACGCA-TTATATAGGTGTAGAGGTATTTGTGCATATAGAAA
i gorGor5.CYUI01015925v1       I 847 C 0
s cerAty1.NW_012001098v1       148388 48 -   1025902 TGCAtagatgcatttgtatatgtatagaggtatttgtgcatatatacg
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             156959 1534 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=90103.000000
s hg38.chrX_KI270880v1_alt     110236 126 +    284869 tatatatgatctagatgtatatt---taACCCATTAGAAAATGAT-TTTCAT-GCTGATAGTACTTCAGTGAATATCTCTTAAAAATATTGATCGCACACGTCCCTCATGAAAAGCAATGGTT-CCCTAAAC
s panTro5.chrX                 239266 126 + 155549662 tatatatgatctacatGTCTGTT---TAAACCATTAGAAGATGAT-TTTCAT-GCTGATAGTACTTCAGTGAATATCTCTTAAAAATAATGATCGCACACTTCCCTCATGAAAAGCAATGGTT-CCCTAAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17195 126 -    177848 tatatatgatctacatGTCTGTT---TAAACCATTAGAAGATGAT-TTTCAT-GCTGATAGTACTTCAGTGAATATCTCTTAAAAATAATGATCGCACACTTCCCTCATGAAAAGCAATGGTT-CCCTAAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       171789 119 +    417917 -ATATAATGACTAGATGTCTGTT---TAAACCATTAGAAGAT-AT-TTTCAT-GCT-ATA-TACTTCAGTGAATATCTCTTAAAAATAATGATCGCAC---CTCCTCATGAAAAGCAATGGTT-CCCTAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       148436 124 -   1025902 tatataggatatagatgtgtatT---TAAACCATGAGAAG---AT-TTGAATGGCTTCGACTATTTCAGTGAATATCTCTTAAAGATAACGACCGCCCACGGCCCTGACGAAAAGCAACGGTT-CCCTCAAC
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             158493 129 +  11138919 TATAAATTATGTATATGTGTATTTTCTGAACTAGATGAAAATAATGCCACAG-GCTCAGAATATGCGAGGATCTATCTCTTAAAAATAATGGT--CACATGACATCTACAAACAATGATGATTCCCCTAAAC
i otoGar3.GL873584             I 1534 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=59981.000000
s hg38.chrX_KI270880v1_alt     110362 96 +    284869 ACAGACTGTCTGGTCCATCTCGGAGTTTCCACAGTCGTGACTCA-CATGCAAGCAATGTACAACTATGGCAGGGCTGGGCTCCTTCCCTCCCAGACA
s panTro5.chrX                 239392 96 + 155549662 ACAGACTGTCTGGTCCATCTCGGAGTTTCCACAGTCATGACTCA-CATGCAAGCAACGTACAACTATCGCAGGGGTGGGGTCCTTCCCTCCCAGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17321 96 -    177848 ACAGACTGTCTGGTCCATCTCGGAGTTTCCACAGTCATGACTCA-CATGCAAGCAACGTACAACTATCGCAGGGGTGGGGTCCTTCCCTCCCAGACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       171908 95 +    417917 ACAGACTGTCTGGTCCAT-TCGGAGTTTCCACAGTCGTGACTCA-CATGCAAGCAACGTACAACTATCGCAGGGGTGGGGTCCTTCCCTCCCAGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             158622 97 +  11138919 GCAGACTATCCAGGTCATACCCCAGTTTCCACAGGCCTCACCCAGTGCACAAGGAACACGAAATTATAACAAGTGTGACTGTTTCTCTCCCTAAACA
i otoGar3.GL873584             C 0 I 7
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560  0 -   1025902 C
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=600.000000
s hg38.chrX_KI270880v1_alt     110458 1 +    284869 G
s panTro5.chrX                 239488 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17417 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       172003 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 I 32
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719 7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560 0 -   1025902 C
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=1836.000000
s hg38.chrX_KI270880v1_alt     110459 13 +    284869 GCTCAAGGTTATG
s panTro5.chrX                 239489 13 + 155549662 GCTCACGAGGAGG
i panTro5.chrX                 C 0 I 20
s panPan2.chrUn_NW_014024190v1  17418 13 -    177848 GCTCACGAGGAGG
i panPan2.chrUn_NW_014024190v1 C 0 I 20
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560  0 -   1025902 C
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       172004 32 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     110472 12 +    284869 CTCCCTGTGCCG
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e panTro5.chrX                 239502 20 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560  0 -   1025902 C
e colAng1.NW_012115411v1       224160 2240 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       172004 32 +    417917 I
e panPan2.chrUn_NW_014024190v1  17431 20 -    177848 I

a score=824.000000
s hg38.chrX_KI270880v1_alt     110484 10 +    284869 GGATCAGAAT
s colAng1.NW_012115411v1       226400 10 +   1230721 GGATCGGAAT
i colAng1.NW_012115411v1       I 2240 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e panTro5.chrX                 239502 20 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560  0 -   1025902 C
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e gorGor5.CYUI01015925v1       172004 32 +    417917 I
e panPan2.chrUn_NW_014024190v1  17431 20 -    177848 I

a score=38353.000000
s hg38.chrX_KI270880v1_alt     110494 45 +    284869 CTGGAATCAGGACGGCCACTCCAGTGACATGAAAGGCACACGGGT
s panTro5.chrX                 239522 45 + 155549662 CTGGAACCAGGACGGCCACTCCAGTGACATAAAAGGCACACGGGT
i panTro5.chrX                 I 20 I 80
s panPan2.chrUn_NW_014024190v1  17451 45 -    177848 CTGGAACCAGGACGGCCACTCCAGTGACATAAAAGGCACACGGGT
i panPan2.chrUn_NW_014024190v1 I 20 C 0
s gorGor5.CYUI01015925v1       172036 45 +    417917 CTGGAACCAGGACGGCTACTCCAGTGACATGAAAGGCACACGGGT
i gorGor5.CYUI01015925v1       I 32 I 1278
s colAng1.NW_012115411v1       226410 45 +   1230721 CTGGAACCAGGACGGCCGCTGCAGCGACACGAAAGGCACACGGGG
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560  0 -   1025902 C
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=1000.000000
s hg38.chrX_KI270880v1_alt     110539 1 +    284869 G
s panTro5.chrX                 239647 1 + 155549662 G
i panTro5.chrX                 I 80 C 0
s panPan2.chrUn_NW_014024190v1  17496 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       173359 1 +    417917 G
i gorGor5.CYUI01015925v1       I 1278 C 0
s colAng1.NW_012115411v1       226455 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719 7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       148560 0 -   1025902 C
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=9061.000000
s hg38.chrX_KI270880v1_alt     110540 9 +    284869 ACAGGACGG
s panTro5.chrX                 239648 9 + 155549662 ACAGGACAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17497 9 -    177848 ACAGTACGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       173360 9 +    417917 ACAGCACGC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       148560 9 -   1025902 ACAGCACGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1       226456 9 +   1230721 ACAGGACGG
i colAng1.NW_012115411v1       C 0 I 4875
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719 7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=15782.000000
s hg38.chrX_KI270880v1_alt     110549 20 +    284869 ACACCCCAGAGACAGGACGG
s panTro5.chrX                 239657 20 + 155549662 ACACCCCAGAGATAGGACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  17506 20 -    177848 CCACCGCAGTGACAGGACGG
i panPan2.chrUn_NW_014024190v1 C 0 I 1316
s gorGor5.CYUI01015925v1       173369 20 +    417917 ACACCCCAGAGACAGGACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       148569 20 -   1025902 ACACCCCAGAGGCAGGACGG
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=38234.000000
s hg38.chrX_KI270880v1_alt     110569  97 +    284869 ACGCCCCAGAGACAGGACGGACGCCCCAGAGACAGCACGGAGA-CCCCAGAGACAGCACGGACA------------------------------------------------------------CCCCCAGAGACAGGACGGACA-CCCCAGAGACAGG
s panTro5.chrX                 239677 137 + 155549662 ACACCCCAGAGACAGGACGGTCACCCCAGAGACAGGACGGAGA-CTCCAGAGACAGGACGGACA--------------------CCCCAGAGACAGGACGGAGATACCAGAGAAACGCGTGACGCCCCCAGAGACAGGACGGAGA-CTCCAGACACAGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       173389  96 +    417917 ACACCCCAGAGACAGGACGGACACCTCAGAGACAGGACGGACA-CCCCAGAGACAGCACGCACA-------------------------------------------------------------CCCCAGAGACAGGACGGACA-TCCCAGAGACAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       148589 139 -   1025902 ACGCCCCAGAGACAGGACGGACGCCCCAGAGACAGGACGGACACCCCCAGAGACAGGACGGACACCCCAGAGACACGACGGACACCCCAGAGACAGGACGGACA--------------------CCCCCAGAGACAGGACGGACACCCCCAGAGACAGG
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719   7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1  17526 1316 -    177848 I

a score=24636.000000
s hg38.chrX_KI270880v1_alt     110666 36 +    284869 ACTGATGCCCCAGAGACAGGACGGACGCCCCCAGAG
s panTro5.chrX                 239814 35 + 155549662 ACGGACACCCGAGAGACAGCACGGACACCCC-AGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  18842 36 -    177848 ACGGACAGCCCAGAGACAGGATGGAGACCCCCAGAG
i panPan2.chrUn_NW_014024190v1 I 1316 C 0
s gorGor5.CYUI01015925v1       173485 35 +    417917 ACGGACACCTCAGAGACAGGACGGACACCCC-AGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       148728 36 -   1025902 ACGGACACCCCAGAGACAGGACGGACACCCCCAGAG
i cerAty1.NW_012001098v1       C 0 I 1259
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=14316.000000
s hg38.chrX_KI270880v1_alt     110702 20 +    284869 ACAGCACGGAGACCCCAGAG
s panTro5.chrX                 239849 20 + 155549662 ACAGCACGGAGACCCCAGAG
i panTro5.chrX                 C 0 I 221
s panPan2.chrUn_NW_014024190v1  18878 20 -    177848 ACAGGACGGACACCACAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       173520 20 +    417917 ACAGCATGAAGACCCCAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150023 20 -   1025902 ACAGCACGGACACCCCAGAG
i cerAty1.NW_012001098v1       I 1259 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=25025.000000
s hg38.chrX_KI270880v1_alt     110722 33 +    284869 ACAGGACGGACGCCCCAGAGACAGGACTGATGC
s panTro5.chrX                 240090 33 + 155549662 ACAGGACGGACACGCCAGAGACAGGACGGAGAC
i panTro5.chrX                 I 221 C 0
s panPan2.chrUn_NW_014024190v1  18898 33 -    177848 CCAGGACGGACACCCCAGAGACAGGATGGAGAT
i panPan2.chrUn_NW_014024190v1 C 0 T 239
s gorGor5.CYUI01015925v1       173540 33 +    417917 ACAGGACGGACACCCCAGAGACAGGACGGAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150043 33 -   1025902 GCAGGACGGACGCCCCAGAGACAGGACGGACGC
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=9358.000000
s hg38.chrX_KI270880v1_alt     110755 24 +    284869 CCCAGAGACAGGACGGACGCCCCC
s panTro5.chrX                 240123 23 + 155549662 CCCAGACACAGGACGGA-GACTCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       173573 23 +    417917 CCCAGAGACAGGACGGA-GACTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150076 24 -   1025902 CCCAGAGACGGGACGGACGGCCCC
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I
e panPan2.chrUn_NW_014024190v1  18931 239 -    177848 T

a score=9265.000000
s hg38.chrX_KI270880v1_alt     110779 19 +    284869 AGAGACAGCACAG-AG-A-CCC
s panTro5.chrX                 240146 21 + 155549662 AGAGACAGCACGGCAGCA-CCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  18692 19 -    177848 AGAGACAGCACGG-AC-A-GCC
i panPan2.chrUn_NW_014024190v1 T 239 C 0
s gorGor5.CYUI01015925v1       173596 19 +    417917 AGAGACAGCACGG-AC-A-CCC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150100 20 -   1025902 AGAGACAGGACAG-AC-ACCCC
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             158719  7 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=79866.000000
s hg38.chrX_KI270880v1_alt     110798 101 +    284869 CAGAGACAGGACGGACG---------------------------------------------------------------------------------CCCCAGAGACAGGACGGAGA-CCCCAGAGACAGCACGGATGCCCCAGAGACAGGACGGA-GGCCCCAGAGACAGCACGGACGCCCC
s panTro5.chrX                 240167 101 + 155549662 CAGAGACAGGACGGACA---------------------------------------------------------------------------------CCCCAGAGACAGGACGGAGA-CTCCAGAGACAGGACGGACACCCCAGAGACAGCACGGA-CACCCCAGAGACAGCACGGAGACCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  18711 102 -    177848 CAGAGACAGGACGGAGAC--------------------------------------------------------------------------------CCCCAGAGACAGGACGGACA-CCCCAGAGACAGGATGGACACCCCAGAGACAGGATGGA-GACTCCAGAGACAGCACGGACACCCC
i panPan2.chrUn_NW_014024190v1 C 0 T 121
s gorGor5.CYUI01015925v1       173615 182 +    417917 CGGAGACAGGACGGACACCCAGGAGACAGGACGGACACCCCGGAGACAGGACGGACAACCACCGGACAGGACGCACAGCCCAGAGACAGGACAGAGATCCCCAGAGACAGGACGGACA-CCCCAGAGACAGGACGGACACCCCAGAGACAGGACGGA-GACCCCAGAGACAGCACGGACACCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150120 103 -   1025902 CAGAGACAGGACGGACAC--------------------------------------------------------------------------------CCCCAGAGACAGGATGGACACCCCCAGAGAGAGGACGGACA-CCCAGAGACAGGACGGACAACCCCAGAGACAGGACGGACACCCC
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             158726  99 +  11138919 CAAGAATAGGATGAG-----------------------------------------------------------------------------------ACTCAGTGTCCCGGTGGCCA-TGCCAGAGACAGCATGGCCTCTCCAGAGACAGGATGGC-CACACCAGAGACAGGATGGGCCCACC
i otoGar3.GL873584             I 7 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=131503.000000
s hg38.chrX_KI270880v1_alt     110899 147 +    284869 AGAG-----------------ACAGGACGGACGCCCCAGAGACAGGACGGACA-CCCCAGAGACAGCACGGACGCCCCAGAGACAGGACGGACGCCCCAGAGACAGGATGGAGGC-CCCAGAGACAGCACGGACGCCCCAGAGACAGGACGGACGCCCCAGAGACA
s panTro5.chrX                 240268 164 + 155549662 AGAGAAAGGACGGACAGCCCAACAGGACGGACACCCCGGAGACAGGACGGACA-CCCCAGAGACAGGACAGACACCTCAGA-ACAGGACGGAGACTCCAGAGACAGGACGGACACACCCAGAGACAGCACGGACACCCCAGAGACAGGACGGACACGCCAGAGACA
i panTro5.chrX                 C 0 I 309
s panPan2.chrUn_NW_014024190v1  18692 148 -    177848 AGAG-----------------ACAGCACGGACAGCCCAGAGACAGGACGGAGACCCCCAGAGACAGGACGGACACCCCAGAGACAGGATGGACACCCCAGAGACAGGATGGAGAC-TCCAGAGACAGCACGGACACCCCACAGACAGGACGGACACCCCAGAGACG
i panPan2.chrUn_NW_014024190v1 T 121 C 0
s gorGor5.CYUI01015925v1       173797 143 +    417917 AGAG-----------------ACAGGACGGACA-CCCAGAGACAGGACGGACA--CCCAGAGACAGCACGGACACCCCAGAGACAGGACGGACACCCCAGAGACAGGACGGAGGC--CCAGAGACAGCACGGACG-CCCAGAGACAGGACGGAGACCCCAGAGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150223 149 -   1025902 AGAG-----------------ACACGAGGGACACCCCAGAGACAGGACGGACACCCCCAGAGAGAGGACGGATGCCCCAGAGACAGGACAGACACCCCAGAGAGAGGACAGACACCCCCAGAGACAGGACGGACGCCCCAGAGACAAGACGGACACCCCAGAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             158825 147 +  11138919 AGAG-----------------ACAGCATGGTTTCTTCAGAGATAGGATGGGCC-CACTGGAGACAGCACAGCCTCTCCAGAGATAGGACGGCCACACCAGAGACAGGATGGGCCC-ACGGGAGACAGCACGGCCTTGCCAGAGACAGCAAGGCCATGCTAGAGACA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=60194.000000
s hg38.chrX_KI270880v1_alt     111046  97 +    284869 GCACGGACG-CCCCAGAGACAGGACGGACGC--------------------------------------------------------CCCAGAGACAGGACGGGCGCCCCAGAGACAGG-ACGGACG-CCCCAGAG----ACAGGACGGACA-CCCCAGAG
s panTro5.chrX                 240741 153 + 155549662 GCGCGGACA-CGCCAGAGACAGGACGGACACCCCACACAGGACAGGGGAACCCCACGACAGCGGACACGCAGAGACAGCACGGACAGCCCAGAGACAGGACGGAGACCCCAGAGACAGG-ACGGACA-CCCCAGAG----ACAGGATGGACA-CCCCAGAG
i panTro5.chrX                 I 309 C 0
s panPan2.chrUn_NW_014024190v1  18840 119 -    177848 GCACGGACA-GCCCAGAGACAGGATGGAGACCCC-----------------------------------CAGAGACAGGACGGACACCACAGACCCAGGACGGACACCCCAGAGACAGG-ATGGAGATCCCCAGAG----ACAGGACGGACA-CCACAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       173940 117 +    417917 GGACGGA-G-ACCCAGAGACAGGACGGACACCT------------------------------------CAGAGACAGGACGGACACCCCAGAGACAGCACGGACAGCCCAGAGACAGGAACGGAGA-CCCCAGAG----ACAGGACGGACA-CCACAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150372 100 -   1025902 GGACGGACACCCCCAGAGAGAGGATGGACACC-------------------------------------------------------CCCAGAGACAGGACGGACGCCCCAGAGACAAG-ACGGACA-CCCCAGAG----ACAGGACGGACACCCCCAGAG
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             158972 101 +  11138919 GGACGGCCA-CACCAGAGGCAGAAC--ATCCCT------------------------------------------------------GCCAGAGACATGACCGCTCTGCTACAGACAAG-CCATCCC-TCCCAGTGAAGCACAGCCTGGCCA-CCCCAGAG
i otoGar3.GL873584             C 0 I 16
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=6110.000000
s hg38.chrX_KI270880v1_alt     111143 9 +    284869 ACAGCACGG
s panTro5.chrX                 240894 9 + 155549662 ACAGGACGG
i panTro5.chrX                 C 0 I 182
s panPan2.chrUn_NW_014024190v1  18959 9 -    177848 CCAGGACGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174057 9 +    417917 ACAGGACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150472 9 -   1025902 AGAGGACGG
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159073 16 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=15825.000000
s hg38.chrX_KI270880v1_alt     111152 20 +    284869 ACG-CCCCAGAGACAGGACGG
s panTro5.chrX                 241085 20 + 155549662 ACA-CCCCAGAGACAGGACAG
i panTro5.chrX                 I 182 C 0
s panPan2.chrUn_NW_014024190v1  18968 20 -    177848 ACA-CCCCAGAGACAGGACAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174066 20 +    417917 ACA-CCCCAGAGACAGGATAG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       150481 21 -   1025902 ACACCCCCAGAGACAGGACGG
i cerAty1.NW_012001098v1       C 0 I 231
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159073 16 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=11433.000000
s hg38.chrX_KI270880v1_alt     111172 31 +    284869 CCGCCCCGGCCCCGCGTTTTCCATGACATAT
s panTro5.chrX                 241105 31 + 155549662 CGCTCGCCGGCCCGTGTTTTTCATCACATAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  18988 31 -    177848 CCGCTCCGGCCCCGTGTTTTTCATCACATAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174086 31 +    417917 CCGCTCCAGCCCTGCGTTTTTCATCACATAT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159073 16 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150502 231 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=60546.000000
s hg38.chrX_KI270880v1_alt     111203 111 +    284869 TTTC--TCTTCGGCCACAGGATGGCAGTGCCAGCTACGGAAACGGTGGACCGTTGTCGGACCCTTTGCTGAGTTTTGAAACA-CGTCACTGCCTTCAGCCTTGTGGGTCCCCGG
s panTro5.chrX                 241136 110 + 155549662 TTTC--TCTTCGGCCACACGATGGCAGTGGCA-CTACGGAAACGGTGGACCTTTGTCGGACCCTTTGCTGAGTTTTGAAACAACGTCACTGCCTTCA-CCTTGTGGGTCCCCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  19019 111 -    177848 TTTC--TCTTCGGCCACACGATGGCAGTGGCACCTACGGAAACGGTGGACCTTTGTCGGACCCTTTGCTGAGTTTTGAAACA-CGTCACTGCCTTCACCCTTGTGGGTCCCCAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174117 113 +    417917 TTTCCTTCTTCGGCCACACGATGGCAGTGGCACCTACGGAAACGGTGGACCTTTGTCGGACCCTTTGCTGAGTTTTGAAACA-CGTCACTGCCTTCACCCTTGTGGGTCCCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             159089  99 +  11138919 CTTC--CTTGTGGCCACACGATGGCAGTGTAACCCACGGAAA-----GGCTGCTCTGGG----TTTGCAGAGTTTAGACCTG-TCCTCCTTTCCCCA-CCATACTGGTCCTG--
i otoGar3.GL873584             I 16 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150502 231 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       214242 7220 +  25972781 I

a score=31089.000000
s hg38.chrX_KI270880v1_alt     111314 54 +    284869 GCTG-CGAACCCCGGGACCGCCTTCCCGCCTCGTGG----GCCGGGGCTCAGGTCTTTA
s panTro5.chrX                 241246 50 + 155549662 GCTGGCGAACCC--GGACCCCCTTCCCGC-TCGTGG-----CCGGCGCTCAG-TCTTTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  19130 54 -    177848 GCTG-CGAACCCCGGGACCCCCTTCCCGCCTCGTGG----GCCGGCGCTCAGGTCTTTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174230 50 +    417917 GCTG-CGAACCC--GGACC-CCTTCCCGCCTCGTGG----GCCGGCGCTCAGGT-TTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       221462 54 +  25972781 GCTG-CGCACGCCGGGGCCTCCTTCCCGCCTCCCGG----GCTGGCCTTCGGGTCCCTC
i macNem1.NW_012017243v1       I 7220 C 0
s cerAty1.NW_012001098v1       150733 54 -   1025902 GCTG-CGCACGCCGGGGCCTCCTTCCCGCCTCCCGG----GCTGGCCTTCGGGTCCCTC
i cerAty1.NW_012001098v1       I 231 C 0
s otoGar3.GL873584             159188 43 +  11138919 ----------------ACTTCCCTGAGATTTGCTGAGATAGCCTGAGATTTGCTCTTTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        69379 6185 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I

a score=85296.000000
s hg38.chrX_KI270880v1_alt     111368 52 +    284869 CATTCATCCCAAACCGGGTTCAAGCCCCATCCCTCCCCCGGCTGCCAACCCC
s panTro5.chrX                 241296 51 + 155549662 AATTCATCC-GAACCGGGATCAAGCCCCTTCCCTTCCCCGGCTCCCAACCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  19184 52 -    177848 AATTCATCCCGAACCGGGATCAAGCCCCTTCCCTCCCCCGGCTCCCAACCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174280 52 +    417917 AATTCATCCCAAACCGGGATCAAGCCCCTTCCCTCCACCGGCTCCCAACGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       221516 52 +  25972781 CATTCACCCCAAACCGGAATCGAGCCCCTTCCCTCCCCCAGCTGCCACCCCC
i macNem1.NW_012017243v1       C 0 I 7719
s cerAty1.NW_012001098v1       150787 52 -   1025902 CATTCACCCCAAACCGGAATCGAGCCCCTTCCCTCCCCCAGCTGCCACCCCC
i cerAty1.NW_012001098v1       C 0 I 756
s manLeu1.NW_012108508v1        75564 52 -    350446 CATTCACCCCAAACCGGAATCGAGCCCCTTCCCTCCCCCAGCTGCCACCCCC
i manLeu1.NW_012108508v1       I 6185 I 1630
s otoGar3.GL873584             159231 52 +  11138919 AGTGTGTCCCAAGTAAGCATCTCTCCATTCCCTGCGCCCCACCCCTCACCCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I

a score=204212.000000
s hg38.chrX_KI270880v1_alt     111420 409 +    284869 -----GTGCCGTTCAGGCCCC-GTAACCGGCTACTTCGGAAC-----------------TGACGTCGTGAAACCTTTGCT-CGACTGTGTT----TCTGACGCTCCCGTCACAGAA-CAGAAGCTGTCGGGAGTGAGCAATGGTCTAGCCCAGGAGAGGAAAATCAGCCG--CGTTTCACTTTGCACCGTCATCTCCTCAGCCGCCCCGTTCCCTCCCACACTTGCAAGATTCCGAGGGAGGAAGCCGCTTCTCGGACCCGGGTCCCAAGCTGTGCAGAAAAGGCCAAGGACACATTTCCGTGTCTGTAGACGCAGCAGGCGGCCGCCAGGGCCTCTTG-----GGCAAAAGACTCCCA----------TTCCCGGCTTTGCCTGCAGACACCCCTCCTCACACGGGCTCTGGAGGTCTGTTGGGGTTTTCCTCAAAAAGttta-ttttttttgtg
s panTro5.chrX                 241347 399 + 155549662 -----GTGCCGTTCAGACCCCTGTAACGGTACTCTTCAGAAC-----------------CGACGTCGTGAAACCTTTGCT-CGCCTGTGTT----TCTGACGCTCCCCTCACAAAAACAGAAG-TGTCGGGAGTGAGCAATCATCTA----AGGAGAGATGAATCAGCCA--CGTTTCACTTTGCACCGTC-----TTCATCC-CCCCATTCTCTGCCACA-TTCCAAGATTCCAAGGAAGGAAGCCGCTTCTCGGACCCGGGTCTCAAGCTGTGCGGAAAAGGCCAAGGACACATTTCCGTGTCTGTAGACGCAGCAGGCGGCCGCCACGGCCTCTTG-----GGCAAAAGACTCCCA----------TTCCCGGCTTTGCCTGCAGACACCCCTCCTCACACGGGCTCTGGAGGTCTGTTGGGGTTTTCATCAAAAAGttta-ttttttttgtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  19236 406 -    177848 -----GTGCCGTTCAGACCCT-GTAACCGGCTACTTCAGAAC-----------------CGACGTCGTGAAACCTTTGCT-CGACTGTGTT----TCTGACGCTCCCCTCACAAAA-CAGAAGCTGTCGGGAGTGAGCAATCATCTAGCCCAGGAGATGAAAATCAGCCA--CGTTTCACTTTGCACCGTC---TCCTCATCC-CCCCATTCTCTGCCACATTTCCAAGATTCCAAGGAAGGAAGCCGCTTCTCGGACCCGGGTCTCAAGCTGTGCGGAAAAGGCCAAGGACACATTTCCGTGTCTGTAGACGCAGCAGGCGGCCGCCATGGCCTCTTG-----GGCAAAAGACTCCCA----------TTCCCGGCTTTGCCTGCAGACACCCCTCCTCACACGGGCTCTGGAGGTCTGTTGGGGTTTTCATCAAAAAGtttatttttttttgtg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       174332 406 +    417917 -----GTGCCGTTCAGACCCT-GTAACCGGCTACTTCAGAAC-----------------CGACGTCGTGAAACCTTTGCT-CGACTGTGTT----TCTGACGCTCCCCTCACAAAA-CAGAAGCTGTCGGGAGTGAGCAATCATCTAGCCCAGGAGATGAAAATCAGCCA--CGTTTCACTTTGCACCGTC---TCCTCATCCCCCCTATTCTCTGCCACATTTCCAAGATTCCAAGGAAGGAAGCCGCTTCTCGGACCCGGGTCTCAAGCTGTGCGGAAAAGGCCAAGGACACATTTCCGTGTCTGTAGACGCAGCAGGCGGCCGCCACGGCCTCTTG-----GGCAAAAGACTCCCA----------TTCCCGGCTTTGCCTGCCGACACCCCTCCTCACACGGGCTCTGGAGGTCTGTTGGGGTTTTCATCAAAAAGttta-ttttttttgtg
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             159283 408 +  11138919 GCCCAGTGCAGCCGAAAT----TTAGCCAGCTAACTCAGAGCGTGGGGAGCCTGCTGGTTTTCCTCATAAGACCCTGACTGCAGCTACATTGTCATCAGACAGTCCCCTC-CAATA-CAAATT------GGGTTTAACGACAGTCCAGCAAAGTAGATTAAAATGAAATGGCTGTTTCCATTTTCAGTATT---TCTTTAACT-CCCAACCTTCTCCTGCA-------GACTGCAAAGAAAACAG--------------------TACAGTTGTTGGGGACGTACCAAG--CAAACTCCAGGACCTCCAGTGGTGTCAGGCATCTGCATCTCATTCCTGCAGGATACAACAGGCGTCCACATCTCAGACTTTCTGGCTTCACTGGCAAATGCTGCTTATCATATGGGCT-TCTTGCCTTGTTGGTGTTTCTTGGAAAATATTT--TATTTTTTGTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I

a score=117411.000000
s hg38.chrX_KI270880v1_alt     111829 238 +    284869 gtttg-cttttctagacagggtctcattctgtcatccgggggctggagcacggcgggaatgatctcggctcagagcagcctccggctactgtggcctcaagtgatcctcccgcctcagcctcccgagtagccgggaccagaggcacctgcc-accacgcccaactca--tttttttgtatttttttgta-ttttttgtagagacggggtttctccatgttgcctgggctggtcttgaactcct
s panTro5.chrX                 241746 237 + 155549662 gtttgttttttctagacagggtctcattctgtcatcc--gggctggagcacagggggaatgatctcagctcagggcagcctctggctcc--tggcctcaagtgatcctcctgcctcagcctcccaagtagccgggaccacaggcacctgccaaccacacccaactca--tttttttgtatttttttgtatttttttgttcagacagggtttctccacgttgcctgggctggtcttgaactcct
i panTro5.chrX                 C 0 I 12838
s panPan2.chrUn_NW_014024190v1  19642 237 -    177848 gtttgttttttctagacagggtctcattctgtcatcc--gggctggagcacagggggaatgatctcagctcagggcagcctccggctcc--tggcctcaagtgatcctcctgcctcagcctcccgagtagccgggaccacaggcacctgccaaccacacccaactca--tttttttgtatttttttgtatttttttgttcagacagggtttctccacgttgcctgggctggtcttgaactcct
i panPan2.chrUn_NW_014024190v1 C 0 I 6226
s gorGor5.CYUI01015925v1       174738 237 +    417917 gtttgttttttctagacagggtctcattctgtcatcc--gggctggagcacagggggaatgatctcagctcagggcagcctccggctcc--tggcctcaagtgatcctcctgcctcagcctcccgagtagcctggaccacaggcacctgcc-acctcacccaactcatttttttttgtatttttttgta-ttttttgtacagacggggtttctccacgttgcctgggctggtcttgaactcct
i gorGor5.CYUI01015925v1       C 0 I 2551
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159691   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I

a score=8939.000000
s hg38.chrX_KI270880v1_alt        112067 97 +    284869 gggatcaagccgtccagcacctcagcctcccaacgtgccgggatgacgggtgtgagccaccgcaccgggccTATTTTATTTTATTATTTCTTTTGTA
s panTro5.chrX                 155292836 97 - 155549662 gggatcaagccgtccaccacctcagcctcccaacgtgccgggatgacgggtgtgagccaccgcaccgggccTATTTTATTTTATTATTTTTTTTGTA
i panTro5.chrX                 T 68877 C 0
e manLeu1.NW_012108508v1           75616 1630 -    350446 I
e saiBol1.JH378345                159566 14883 +    465904 I
e otoGar3.GL873584                159691  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        129721 6449 -    811265 I
e cerAty1.NW_012001098v1          150839 756 -   1025902 I
e colAng1.NW_012115411v1          226465 4875 +   1230721 I
e macNem1.NW_012017243v1          221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1          174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1     19879 6226 -    177848 I

a score=18094.000000
s hg38.chrX_KI270880v1_alt        112164 115 +    284869 GAAATTGTTTAAGTGGCTACAAAAGTCCACAAACATCCTCCCTGAGATTCTCCCTTAGAATAATCGTCTTCGTGGGCACAC-AGCATGTGCTGCTGCTGACCTGAGT----GGCCTCGGC
s panTro5.chrX                 155292933 115 - 155549662 GACATTGTTTAAGTGGCTACAAAAGTCCACAAACATCCTCCCTGAAATTCTCCCTTAGAATAATCGTCTTCGTGGGCACAC-AGCACGTGCTGCTGCTGACCTGAGT----GGCCTCTAC
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584                159691 117 +  11138919 GATATTGTTTAAGAGTCTGCAAAAGTCCACAAAA--TCTCCCTGCAAGTCTCCCTGTATGCGTCCGTC-CCGTGGGCACACGAGTGTGTCCTGCCATTGGTGTGAATGGACGGCCTCAGC
i otoGar3.GL873584             C 0 I 868
e manLeu1.NW_012108508v1           75616 1630 -    350446 I
e saiBol1.JH378345                159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1        129721 6449 -    811265 I
e cerAty1.NW_012001098v1          150839 756 -   1025902 I
e colAng1.NW_012115411v1          226465 4875 +   1230721 I
e macNem1.NW_012017243v1          221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1          174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1     19879 6226 -    177848 I

a score=27110.000000
s hg38.chrX_KI270880v1_alt        112279 364 +    284869 TCGACGTCTAGACGGCTCAGCGTTTGGACAGTTTCCAATCAGGG------tctgtcacccaggctggagtctgggtgtgatctcggctcactgcagcctGTttcctccctccct----------------------------------------------------------------tcctttcctccct---------------------------------ccttcctttcctccgtccctcctttcctccctccttcct----------------ttcctccctccctgcctctcttccttcctttcttcctGGACAGCCTGGCATCTGCACcgtgtcctggctgagcctcctgccagctctgtggcctc-gttgaggggg-------gcgtgtctcaccatctttgcaccccagtttccccatctgtgaggcagggacggaaacaggcacccctcgaggtCACCCCTCCAGCATTTGTTTACAGCT
s panTro5.chrX                 155293048 491 - 155549662 TCAACATCTAGACGGCTCAGTGTTTGGACAGtttcaaatcagggtctcgctctgtcacccaggctggagtctgggtgtgatctcggctcactgcagcctGTttcctccctccctcccttccttcctttcatctttcctccctcccttcctccctccctcccttccttccttgcttccctcctttcctccctccctccttccctcctttccttcttcctttcctcccctcctttcctccctccctcctttcctccctccctcctttcctccctccctcctttcctccctccctgcctctcttccttcctttcttcctGGACAACCTGGCATCTGCACcgtgtcctggctgagcctcctgccagctctgtggcctcggtggagggggggggggtgcgtgtctcaccatctttgcaccccagtttccccatctgtgaggcagggacagcaacaggcacccctcgaggtCACCCCTCCAGCATTTGTTTACAGCT
i panTro5.chrX                 C 0 T 74927
e manLeu1.NW_012108508v1           75616 1630 -    350446 I
e saiBol1.JH378345                159566 14883 +    465904 I
e otoGar3.GL873584                159808 868 +  11138919 I
e chlSab2.chrUn_KE147541v1        129721 6449 -    811265 I
e cerAty1.NW_012001098v1          150839 756 -   1025902 I
e colAng1.NW_012115411v1          226465 4875 +   1230721 I
e macNem1.NW_012017243v1          221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1          174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1     19879 6226 -    177848 I

a score=80911.000000
s hg38.chrX_KI270880v1_alt     112643 928 +    284869 GTCTCACATGAACTTAGATCCATGGAAAAGCGTCACCCTGACTCGTCGAGCTGCAAAAACGGCCCAGGACAGAGAGGGGGGCCCTTGGGATGGTGGCGGCCGGGACCCGAGGCTGTTGTCCAGTCATAGAACCTCAGAGCCTGTTCAAATcagggtctcgctctgtcacccaggctggagtctgggtgtgatgtcggctcaccgcagcctccacctcctgggctcgagcgattctcctgcctcagcctccggaggagctgggaccacaggtgcccgccaccacgctgggccgatttttacagtttttgtagagatggggcctcactgtgttgtccaggctggtcttgaactgttaacctcaagcgatcctcctgcctcggccatccagggtcctgcaatgatgggcgtgagccactgtgcctggccTATTTTTTATTGCTGAGGGTTTTGCAGAAATCATGTAAGAAGTggccggacgcagtgactcacgcctgtcatcccagcactctgggaggccgaggcgggtggatcaccagaagtcaggagttcgagaccagcctgggcaacatggcgaaaccccgtctctactaaaatacgaaagaaattggctgggagtggtggcaggtgcctgtagttccagctactcaggaggttgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaacgagagtgaaactccatctcaaa--aaaagaaaaaaaggctggacacagtggctcacgcctgtcatcccagcactttgggaggctgaggcggacagattgcctgagctcaggagttcgagaccagcctggccaacatgttgaaaccccgtctctactaaaatacaaaagaaattagctgggagtggtggcaggtgc
s panTro5.chrX                 254821 930 + 155549662 GTCTCACATGAACTTAGATCCATGGAAAAGCGTCACCCTGACTCGTCGACCTGCAAAAATGGCCCAGGACAGAGAGGGGGGCCCTTGGCATGGTGGCAGCCGGGACCCGAGGCTGTTGTCCAGTCATAGAACCTTAGAGCCTGTTCAAATcagggtctcgctctgtcacccaggctggagtctgggtgtgatctcggctcaccgcagcctccacctcctgggctcgagcgattctcctgcctcagcctccggaggagctgggaccacaggtgcccgccaccacgccgggctgatttttacagtttttgtagagatggggcctcactgtgttgtccaggctggtcttgaactgttcacctcaagcgatcctcctgcctcggccatccagggtcctgcaattatgggcatgagccactgtgcctggccTATTTTTTATTGCTTTGGGTTTTGTAGAAATCATGTAAGAAGTggccggacgtggtgactcacgcctgccatcccagcactttgggaggctgaggtgggtggatcaccagaagtcaggagttcgagaccagcctgggcaacatggcgaaaccccgtctctactaaaatacaaaagaaatgagccgggcgtggtggcaggtgcctgtaatcccagctactcaggaggctgaagcaggagaattgcttgaacctgggaggcggagattgcggtgagctgagatcgagccattgcactccagcctgggcaacaagactgaaactccatctcaaaacaaaacaaaaaaaggctggacacagtggctcacgcctgtcatcccagcactttcggaggccgaggcgggtggatcacctgagctcaggagtttgagaccagcctgggcaacatggcgaaaccctgtctctactaaaatacaaaagaaattagctgggcgtggtggcaggtgc
i panTro5.chrX                 I 12838 I 5461
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159808 868 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=64030.000000
s hg38.chrX_KI270880v1_alt     113571 734 +    284869 ctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggacacggaggttgcagtgagacgagattgccccatcgcactccagcctgcaacagagcgagactccttaacaagggaggctattctgacacctgctaccatgtggaagaagcttgacaatattg--------accaatcagccagacacagaaagacaagtcctgtgtgattccacttcgaggaggtccctcgagtcaccagagtcacagagacagaaagtataacggtgggtgccgggggctgaggagggcgaatggagctgtcgttgaaggggggggtcgcagtttcgggtttagaagtggaattttggagacaaatcacggggatggttgcagaaaagtgtgagcgtgcttgttaccccggaactgtgcacataaagatgTCTCACCTGTTggccgggcgcggtggctcacgcctgtcatcccagcacttggggaggccgaggtgggtggatcacttgaggtcaggagatcaagaccagcctggctaacatggtgaaaccccgtctctactaaaaatacaagaaaaaaattagccgggtgtggtggcgggcacctgtagtcccagctgctcgggaggctgaggcaggagaatggcatgaacccgggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagcgagactccatctcaaacaaaca
s panTro5.chrX                 261212 739 + 155549662 ctgtaatcccagctactcaggaggctgaggcaggagaactgcttgaacctgggaggcggaggttgcagtgagctgagatcgccccatcgcactccagcctgcaacagagcgagactccttaacaagggaggctattctgacacctgctaccatgtggaagaagcttgagaatgttacgctgaacaccagtcagccagacacggaaagacaaatcctgtgtgattccacttcgaggaggtccctcgagtcatcagagtcacagagacagaaagtataacggtgggtgccgggggctgaggagggcgaatggagctgtcgttgaaggggggg-tcgcagtttcgggtttagaagtggaattttggagacaaatcacggggatggttgcagaaaagtgtgagcgtgcttgttaccccggaactgtgcacataaagatgTCTCACCTGTTggccgggcgcggtggctcacgcctgtcatcccagcactttgggaggccaaggcgggtggatcacttgaggtgaggagatcaagaccagcctggctaacacggtgaaaccccgtctctactaaaaatacaagaaaaaaattagccaggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggaggatggcgtgaacccgggaggcggaggttgcagtgagccgagattgtgccattacactccagcctgggcgacagagcaagattccatctcaaaaaaa--
i panTro5.chrX                 I 5461 C 0
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             159808 868 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=67703.000000
s hg38.chrX_KI270880v1_alt     114305 587 +    284869 aaaaaGGGCT----CGTGTGTATGAGGCTGGGGACGCAGGAGAGGGTCTCTCCC-CCTGAAACTCGGGGG---GTCCTGGGAAAG--AATCCAGCCTCCAGCCTGGCCCTGGGAACCCTG---------------GACCAGGCAGGG---GG-TCACTGCCCC-CTTCCTGGGGAGTCTCAGCTGAAAATAGCTCATCTCACAGGG----GACCCGCACGGCTGACGTCCAGGACGAGCCCGAGACTCCTCAAGAAAAGCCTCGTGTTAAACACACGTGTGTCTCCTCGCCTGCCGGTTTAATGCCCAGTCGTGGGGTCCTGGGTTGTGGCCACGAAGTCCTATTCCTCTGTCGCCAGGGTGAGA----AGGTGGC----------------TGTCGGCAGGGATTTTGGGATCAGGCAGGTGACTTCTCACGAAGGCTGGTTTCTCAGCCTCACATCTGCCGACATCGGGGGCTGGAGGATTCTCCGTCGTGGGGCGT-----------CCTGTGCCCTGT---GGGGTGTCGGGGACATGT-----TCTCACT---CGGAGGACACATTGATTCAAACCATA------------GGATACACAGTTGATTCATACATGTATGATT----GATAGGTG-----ATTGGTTGACAGATAGTTGATGGATAGATATTGATATAGA
s panTro5.chrX                 261951 586 + 155549662 ataaaaGGCT----CATGTGTATGAGGCTGGGGACGCAGGAGAGGGTCTCTGCC---TGAAACTCGGGGG---GTCCTGGGAAAG--AATCCAGCCTCCAGCCTGGCCCTGGGAACCCTG---------------GACCAGGCAGGG---GGGTCACTGCCCC-CTTCCTGGGGAGTCTCAGCTGAAAATAGCTCATCTCACAGGG----GACCCGCACGGCTGACGTCCAGGACGAGCCCGAGACTCCTCAAGAAAAGCCTCGTGTTAAACACGCGTGTGTCTCCTCGCCTGCCGGTTTAATGCCCAGTCGTGGGGTCCTGGGTTGTGGCCACAAAGTCCTATTCGTCTGTCGCCAGGGTGAGA----AGGTGGC----------------TGTCGGCAGGGATTTTGGGATCAGGCAGGTGACTTCTCACGAAGGCTggtttctcagcctcacctctgccgacatcgggggctggaggattctccgtcgtggggcgt-----------cctgtgccctgt---ggggtgtCGGGGAGACAT-----TCTCACT---CGGGGAACACATTGATTCAAACCATA------------GGATACAGGGTTGATTCATAGATGTATGATT----GATAGGTG-----ATTGGTTGACAGATAATTGATGGATAGATATTGATAGAGA
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             160676 647 +  11138919 aaaaatggttcagGCATGTCTATAAGGTTGGGG--GCTTGAAAGAGTATCTGCCTCCTGGAACTTGGGGGGGTGCTCCGGGACAGAAAATGAAGCCCCCAGCCTGGCCTTGGGGACCCTGTGGGGCCTCTGGTATGGCTGGGCTGGACTCAG-TCAGTGTACAGCCTCCTGAGGAGTTTGGGTAGAAAAATGCTCATCCCTACGTGTGCAGGCCAGCTCTGCACAGGTCTGGGGA------------CCCCAGGAAAGATCCCACATCAC-------TGGGCCCCCT--CCCACCAGGATAAGGACTCACAGTGGA--TCTGGGCTATGGGAAGGAAA--CTGTTCCCATGTTATGACAGTGAGAACTCAGGAGGCAGAAACCATTCCCTGGTGTCCACAGGGGTTTTGGTGGCAGTTACATGACTTCTGGAGAAGGCAGGTGTTTCAGCCCTGGCACTGTGGACATTTGGGGCTGGAGGACTCT-----GTGGGGGGTGGAGCAGAGTCCCAGGGCCCCATCTCCAGGTGTCAGCAGCACCTGCCTCTCCCACTGTGACGAGCAGAAGTGTCCCCAAACACTGCCAGTGTCTCCTGGCCACAGAATTGTCTC-TACTTGCAAACCTCTGCCATAGGTGGTTCAATTGGTTAATAGC---TTGACGGACAGAAATAAAGGGAGA
i otoGar3.GL873584             I 868 I 297
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=22900.000000
s hg38.chrX_KI270880v1_alt     114892 268 +    284869 TGCATGATTAATAGGTGATTGACAGATGATAGACATTAATATAAATGTATGATTGAT----TGGTTGACAGATGATAGATAATTGATATAGATGCATGATTAATAGGTGATTGACAGATAATTGATAGGCATTAATATAAATGTATGATTGATAGATGATTGGTTGACAG-------ATAATTGATATAGACACATGATTAATAGGTGATTGACAGATAATTGATAGACATTAATAGAAATGTATGATTGATGATTGGTTGACAGATGATTGATAATTG
s panTro5.chrX                 262537 275 + 155549662 TGCATGATTAATAGGTGATTGACAGATGATAGACATTAATATAAATGTATGATTGATAGATTGGTTGACAGATGATAGATAATTGATATAGATGCATGATTAATAGGTGATTGACAGATAATTGATAGGCATTAATATAAATGTATGAT----AGATGATTGGTTGACAGGTAATTGATAATTGATATAGACACATGATTAATAGGTGATTGATAGATAATTGATAGACATTAATAGAAATGTATGATTGATGATTGGTTGACAGATGATTGATAATTG
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161323 297 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=51237.000000
s hg38.chrX_KI270880v1_alt     115160 382 +    284869 ATATAGATGCAT---GATTAATAGATGGT---TGATAATTGACAGATAATTGGTATAGATGCATGATTGATAGATGATTTATTGACAGACAATTGATACATAAGCGATACAGATGCATGATTGATAGGGA---------ATTGATTGACAGATGATTGATAATTTAT-------ATAGATGTATGACTGATCAGTGATTGGTTGATAGGTAATTGATATAGATGCATGATTGACAGATGATTGGTTGTCAGATAATTGACCGATAGTAATGGATAGCTGATTAATAGATAGATAATTGATTAATCAATAATTGATAGAT-GATAGATAAAGAATCTCTCATGCCCAGGCAGCTTTCTCAGCTCTGGCACTGCTGATGTTTGGGACTGGAGGACTCTCTGTCTTGG
s panTro5.chrX                 262812 382 + 155549662 ATATAGATGCAT---GATTAATAGATGGT---TGACAATTGACAGATAATTGGTATAGATGCATGATTGATAGATGATTTATTGACAGACAATTGATACATAAGCGATACAGATGCATGATTGATAGGGA---------ATTGATTGACAGATGATTGATAATTTAT-------ATAGATGTATGACTGATCAGTGATTGGTTGATAGGTAATTGATATAGATGCATGATTCACAGATGATTGGTTGTCAGATAATTGACCGATAGTAATGGATAGCTGATTAATAGATAGATAATTGATTAATCAATAATTGATAGAT-GATAGATAAAGAATCTCTCATGCTCAGGCAGCTTTCTCAGCTCTGGCACTGCTGATGTTTGGGACTGGAGGACTCTCTGTCTTGG
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             161620 349 +  11138919 ATGTACATGTATAGAGATAGACAGAAGATAAAAGATAATGGATAGGTgat---gatagatacatggttgatagatgat--------agatagatgataca--------ataaatagatgattcatagatacatagatagatgtatagatagaagatagataatatatggaaagaatagatacgtagatgataaacagatgatagat----------tatagacagatgataggtacatgat--------ggatagatgacagatgata----------gatt-atagacagatgataggtacat-gatagatgacagatagatggatggacaCCCTCTCATACTCAGGCAG---tctcaacctcagccctgctgacatttggggctaggggactctctgtg----
i otoGar3.GL873584             I 297 C 0
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       221568 7719 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=9029.000000
s hg38.chrX_KI270880v1_alt     115542 22 +    284869 GGCCACCCTGGGTGCTGCAGGG
s panTro5.chrX                 263194 22 + 155549662 GGCCACCCTGGGTGCTGCAGGG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229287 22 +  25972781 GGCCATCCTGGGTGCTGTAGGG
i macNem1.NW_012017243v1       I 7719 C 0
s otoGar3.GL873584             161969 22 +  11138919 gggcatcctatgcactgtgggg
i otoGar3.GL873584             C 0 I 6043
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=11534.000000
s hg38.chrX_KI270880v1_alt     115564 52 +    284869 TGCTAACTCTCT-TGATGAGGCCGTCCTGGGTACTGTAGGGTACTGAGTCTCT
s panTro5.chrX                 263216 53 + 155549662 TGCTAAGTCTCTGTGATGAGGCCGTCCTGGGCTCTGTAGGGTGTTGAGTCTCT
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229309 53 +  25972781 TGTTGAGTCTCTGTGATGGGACCGTCCTGGGCACTGTAGGGTGTTGAGTCTCT
i macNem1.NW_012017243v1       C 0 C 0
e manLeu1.NW_012108508v1        75616 1630 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=27971.000000
s hg38.chrX_KI270880v1_alt     115616 68 +    284869 GTGATGAAGCCGTCCTGGGCTCTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGAGGCCGTCCTGGGCC
s panTro5.chrX                 263269 62 + 155549662 GTGATGAGGCCGTCCTGGGCACTGTAGGGTGT------TGAGTCTCTGTGATGAGGCCGTCCTGGGCA
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229362 62 +  25972781 GTGATGGGACCGTCCTGGACACTGTAGGGTGT------TGAGTCTCCGTGATGAGGCCATCCTGGGTG
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1        77246 68 -    350446 gtgatgagGCCGTCCTGGGCCCTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGGGAGCATCCTGGGCC
i manLeu1.NW_012108508v1       I 1630 I 14
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=43326.000000
s hg38.chrX_KI270880v1_alt     115684 196 +    284869 CTGTAGGATGCTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGCTGAGTCTGAGTCTCTGTGATGAGGCCGTCCTGGGCCCTGTAGGGTGTTAAGTCTCTGTGATGAGGCC-----------------------------------------------GTCCTGGACACTGTAGGGTG------CTGAGTCTCTGTGATGAGGCCGTCCTGGGCACTGTAGGGTGTTGAGTC-------------------------------------------------------------------------------------TGAGTCTCT
s panTro5.chrX                 263331 328 + 155549662 CTGTAGGGTGTTGAGTCTCTGTGATGAGGCCGTCCTGGGCCCTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGTCTCTGTGATGAGGCCGTCCTGGGAGCTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGAGGCTGTCCTGGACACTGTAGGGTG------CTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGCTGAGTCCACTGTGATGAGGCCCGCTGTCCTGGACACTTGTATGGGTGTTTGAGTCTGTGTGATTGAGGCCGTCCTGGGCACTGTAGGGTGTTGAGTCTCT
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229424 248 +  25972781 CTGTAGGGTGTTGAGTCTCTGTGATGGGACCGTCCTGGGCACTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGGGACCGTCCTGGGCTCTGTAGGGTGTTGAGTCTCCGTGATGAGGCTGTCCTGGGCCCTATA-GGTGTTGAGTCTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGGGACCGTCCTGGACACTGTAGTGTGTTGAGTC-------------------------------------------------------------------------------------TGAGTCTCT
i macNem1.NW_012017243v1       C 0 C 0
e manLeu1.NW_012108508v1        77314  14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       150839 756 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=19793.000000
s hg38.chrX_KI270880v1_alt     115880 37 +    284869 GTGATGAGGCCGTCCTGGGCCCTGTAGGGTGTTGAGT
s panTro5.chrX                 263659 37 + 155549662 GTGATGAGGCCGTCCTGGGCACTGTAGGGTGTTGAGT
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229672 37 +  25972781 GTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGT
i macNem1.NW_012017243v1       C 0 I 6
s cerAty1.NW_012001098v1       151595 37 -   1025902 gtgatgagGCTGTCCTGGGCCCTGTAGGGTGTTGAGT
i cerAty1.NW_012001098v1       I 756 C 0
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=15610.000000
s hg38.chrX_KI270880v1_alt     115917 71 +    284869 GTCTGTGATGAGGCCGTCCTGGGAGCTGTAGGGTGTTGA--------CTCTGTGGTGGGGCCGTCCTGGGCGCTGTAGG
s panTro5.chrX                 263696 79 + 155549662 CTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229715 73 +  25972781 CTCTGTGATGGGACCGTCCTGGGAACTGTAGGGTGTTGA------GTCTCTGTGATGGGACCGTCCTGGGCCCTGTAGG
i macNem1.NW_012017243v1       I 6 I 569
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151632  0 -   1025902 C
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=291.000000
s hg38.chrX_KI270880v1_alt     115988 3 +    284869 GTG
s panTro5.chrX                 263775 3 + 155549662 GTG
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151632 0 -   1025902 C
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229788 569 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=18872.000000
s hg38.chrX_KI270880v1_alt     115991 80 +    284869 CTGAGTCTCTGTGATGAGACCGTCCTGGGAGCTGTAGGGTGTTGA--CTCTGTGGTGGGGCCATCCTGGGCGCTGTAGGGTG
s panTro5.chrX                 263778 82 + 155549662 TTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTG
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       230357 82 +  25972781 CTGAGTCTCTGTGATGGGACCGTCCTGGACACTGTAGGGTGTTGAGTCTCTGTGATGGGACCATCCTGGGCTCTGTAGGGTG
i macNem1.NW_012017243v1       I 569 I 6
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151632  0 -   1025902 C
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=20817.000000
s hg38.chrX_KI270880v1_alt     116071 84 +    284869 CTGAGTCTCTGTGATGAGACCGTCCTGGGAGCTGTAGGGTGTTGA--CTCTGTGGTGGGGCCGTCCTGGGCGCTGTAGGGTGCTGA
s panTro5.chrX                 263860 86 + 155549662 CTGAGTCTCTGTGATGAAGCCGTCCTGGGCTCTGTAGGGTGTTGAGTCTGTGTGATGAGGCCGTCCTGGGCACTGTAGGGTGTTGA
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       230445 85 +  25972781 CTGAGTCTCTGTGATGAGGCCGTCCTGGGCCCTGTA-GGTGCtgactctctgtcatggggccatcctgggtggtgtaaggtgctga
i macNem1.NW_012017243v1       I 6 T 1181
s cerAty1.NW_012001098v1       151632 43 -   1025902 CTGAGTCTCTGTGATGGGAGCGTCCTGGG-CCTGTA-GGTGCTGA-----------------------------------------
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=6113.000000
s hg38.chrX_KI270880v1_alt     116155 25 +    284869 GTCTCTGTGATGAGGCCGTCCTGGG
s panTro5.chrX                 263946 25 + 155549662 GTCTCTGTGATGAGGCCGTCCTGGG
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1       151675 25 -   1025902 CTCTCTGTCATGGGGCCGTCCTGGG
i cerAty1.NW_012001098v1       C 0 I 19
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       230530 1181 +  25972781 T
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=864.000000
s hg38.chrX_KI270880v1_alt     116180 9 +    284869 AGCTGTAGG
s panTro5.chrX                 263971 9 + 155549662 AGCTGTAGG
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151700 19 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       230530 1181 +  25972781 T
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=20236.000000
s hg38.chrX_KI270880v1_alt     116189 87 +    284869 GTGTTGA--CTCTGTGGTGGGGCCGTCCTGGGCGCTGTAGGGTGT------TGAGTCTCTGTGATGAGGCCGTCCTGGGAGCTGTAGGGTGTTGA
s panTro5.chrX                 263980 95 + 155549662 GTGTTGAGTCTCTGTGATGAGGCCGTCCTGGACACTGTAGGGTGTTGAGTCTGAGTCTCTGTGATGAGGCCGTTCTGGGAGTTGTAGGGTATTGA
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229349 89 +  25972781 GTGTTGAGTCTCTGTGATGGGACCGTCCTGGACACTGTAGGGTGT------TGAGTCTCCGTGATGAGGCCATCCTGGGTGCTGTAGGGTGTTGA
i macNem1.NW_012017243v1       T 1181 I 2
e manLeu1.NW_012108508v1        77314 14 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151700 19 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=17602.000000
s hg38.chrX_KI270880v1_alt     116276 40 +    284869 CTCtgtggtggggccgtcctgggcgctgtagggtgctgag
s panTro5.chrX                 264075 40 + 155549662 ctctgtcgtggggccatcctgggcgctttagggtgctgag
i panTro5.chrX                 C 0 C 0
s macNem1.NW_012017243v1       229440 40 +  25972781 CTCTGTGATGGGACCGTCCTGGGCACTGTAGGGTGTTGAG
i macNem1.NW_012017243v1       I 2 I 2085
s manLeu1.NW_012108508v1        77328 40 -    350446 ctctgtcatggggccgtcctgggtggtgtaaggtgctgat
i manLeu1.NW_012108508v1       I 14 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151700 19 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=6416.000000
s hg38.chrX_KI270880v1_alt     116316 35 +    284869 gagcgtccctgggctccacccagcagatgccagtt-
s panTro5.chrX                 264115 35 + 155549662 cagcctgcctgggctccacccagcagatgccagtt-
i panTro5.chrX                 C 0 C 0
s manLeu1.NW_012108508v1        77368 36 -    350446 ccacgtccgtgggctccacccagcagatgccagatg
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151700 19 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=84973.000000
s hg38.chrX_KI270880v1_alt     116351 181 +    284869 cacccccatgttgtgacatgcagacatgtcccctgatattgctgagtgtgtccggggagggggca-ggatgtcccctggctgagaaccacACTGCACTAAGGAATT---AAGAGGACGGCCGCACTTAGAGACACAGTTGCCCATGAGCTCATACCGGCTTCTCCAAGCAGGTCACTCTGAAATC
s panTro5.chrX                 264150 184 + 155549662 cacccccatgttgtgacatccagacatgtcccctgatattgctgagtgtgtctggggagggggca-ggatctcccctggctgagaaccacACTGCAGTATGGTATTAAGAAGAGGACGGCCACACTTAGAGACACAGTTGCCCATGAGCTCATACCAGCTTCTCCAAGCAGGTCACTCTGAACtc
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1       151719 184 -   1025902 caccccca-gttgtgacacccaaacctgtcccctgatgttgctgagtgtgtccggggagggggcctggatctcccctggctgggaaccacACTGCACTAAGGCATTCAACAGAGGACGGCCGCACTTAGAGACACAGGTGCAGATGAGCTCACACCGGCTTCTCCAAGCAGTTCACTCCGAAATC
i cerAty1.NW_012001098v1       I 19 I 2253
s manLeu1.NW_012108508v1        77404 184 -    350446 caccccca-gttgtgacacccaaacctgtcccctgatgttgctgagtgtgtccggggagggggcctggatctcccctggctgagaaccacACTGCACTAAGGCATTCAACAGAGGACGGCCGCACTTAGAGACACAGGTGCAGATGAGCTCACACCGGCTTCTCCAAGCAGCTCACTCCGAAATC
i manLeu1.NW_012108508v1       C 0 I 2183
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=4126.000000
s hg38.chrX_KI270880v1_alt     116532 90 +    284869 TTGttttttttttgtttttttttttttttttttttttttttgagacaaagtcgtgctcttgtcgcccaggctggagtgcggtggtgccat
s panTro5.chrX                 264334 63 + 155549662 ---------------------------ttttttttttttttgagatggagtcttgctcttgtcgcccaggctggagtgcagtggcgcgat
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       174975 2551 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=106527.000000
s hg38.chrX_KI270880v1_alt     116622 458 +    284869 ctcggctcactgcaagctccgcctcccgagttcacaccattctcct-gcctcagcctc-ccgagtagctgggactacaggtgcccgccaccacgcccggatacttttttgtatttttagtagagaccgggtttcac-cgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggatgacaggcgtcagccactgcgcccggccCAACAGCTCTTTAAGTGGCTTGATTATGACCCTTGCACGCTGGCACCTGT-CTTTGGGATCTTGGCATGGGCATGGACCCATGGATTAGTCAAACACCAACAGGGGCTCAGAAGGAAGGAGAGAATCTATATGGGAGGCTGGCACCTGGCAAGGGATGATCCCTTCATTGCTGCAaaggcaatgaagaaggaagaaggaggcaatgaacaaaggaagaaaggaagg
s panTro5.chrX                 264397 457 + 155549662 ctcggctcactgcaacctccgcctcccgagttcacgccattttcct-gcctcagcctc-ccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttctatttttagtagagatggggtttcac-cgtgttagtcaggatggtctcgatctgctgacctcgtgatccacccgcctcagcctcacgaagtgctgggatgacaggcgtgagccactgcgcccggccCAACAGCTCTTTAAGTGGCTTGATTATGACCCTTGCACACTGGCACCTGT-CTTTGGGATGTTGGCATGGGCAT-GACCCACGGATTAGTCAAACACCAACAGGGGCTCAGAAGGAAGGAGAGAATCTATATGGGAGGCTGGCACAGGGCAAGGGATGATCCCTTCATTGCTGCAaaggcaatgaagaaggaagaaggaggcaatgaacaaaggaagaaagaaagg
i panTro5.chrX                 C 0 I 428
s gorGor5.CYUI01015925v1       177526 457 +    417917 ctcggctcactgcaagctccgcctcccgggttcacaccattctcctggcctcagcctcttccagtagctgggactacaggtg-ccgccaccacgcctggattactttttgtatttttagtagagacggggtttcacgcgcgttagccatggatgtctcgatctcctgaccttgtgatccacctgccttggcctcccaaagtgctgggatgacaggcgtaag-caccgcgcccggccCAACAGCTCTTAATGAGCTTGAATTATGACCCTTGCACACTGGCACCTGTCCTTTGGGATGTTGGCCTGGGCGT-GACCCATGGATTAGTCAAGCACCAACAGGGGCTCAGAAGGAAGGAGAGAATCTATATGGGAGGCTGGCACATGGCAAGGGATGATTCCTTCATTGCTGCAAAGGCAATGAAGAA-GAAGAAGGAGGCAATG-ACaaaggaagaaagaaagg
i gorGor5.CYUI01015925v1       I 2551 I 348
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     117080 50 +    284869 gaggagtgatggaacgaaggaaggaaggggaaggagggagggaaggacga
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e panTro5.chrX                 264854 428 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       177983 348 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=91.000000
s hg38.chrX_KI270880v1_alt     117130 1 +    284869 a
s panTro5.chrX                 265282 1 + 155549662 a
i panTro5.chrX                 I 428 C 0
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       177983 348 +    417917 I
e panPan2.chrUn_NW_014024190v1  19879 6226 -    177848 I

a score=7534.000000
s hg38.chrX_KI270880v1_alt     117131 40 +    284869 aggaaggaaggagggagggaaggaaggaaggaa-----ggaagCT----
s panTro5.chrX                 265283 45 + 155549662 aggagggagggagggaaggaaggaaggaaggaaaggagggaagCT----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  26105 45 -    177848 ----aggatggaaggaaggaaggaaggaaggaaaggagggaagCTTCCC
i panPan2.chrUn_NW_014024190v1 I 6226 C 0
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I
e gorGor5.CYUI01015925v1       177983 348 +    417917 I

a score=552013.000000
s hg38.chrX_KI270880v1_alt     117171 1218 +    284869 TCCATTCTTCCATTGTAGCAGCAGCGTACACTGCCCAGCCCGGGCTTCGTTTCC---ACTTTCTGTGACCTGGTGTGGCG-GTGAGTCTTACTCAGCGTGCTTGAGCCGAAATG-TCACCAGCTGCCCGCCGACC---TGGGATGACACCTTGGG-CCGTTCTGTTTTCTCCCGTTCACCGGTCAAGACGCTGAAACTCGGGAGCTTTTGGCGGCCGAGCTGCGTGAAGGGACTTCAAGAGACGAGGAGACGGACCCCGTGG-AAACCTCTCCCACCTGGCGATTGGTGAGGAGGACAGAGGCGA-CGGCAGAGGCG-GTTTCAT--TTTGTGCTTTGAGACGGCCG-TTTTGAGGTTGGGAGGCAGCCGCGATGGGAGTTGGGTTTGTCAATGGCA-TTTTTTTTTTTTTACttttttattattatactttaagttcgagggtacatgtgcacaaagcgcaggttagttacatacgtatacatgtgccatgctggtgtgctgcacccattaactcgtcatttacattgggtatgtctcctaatgctgtccctcccctctcccccaggaaac-aacaggtgctggagaggatgtggagaagtaggaacacttt-tacactgttggtgggactgtcaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaatac-catttgacccagccatcccattgctgggtatatacccaaaggact--ataaatcatgctgc--tataaagacacatgcacacgtatgtttatt-gcggcactgtc-cacaatagcaaagacttggaaccaacccaaatgtccaacaacgatagactggatgaag-aaaatgtggcacatatacaccatggaatact-atgcagccatgaaaaaggatgagttcatgtcctttgtagggacgtggatggaattggaaatcatcattctcagtaaactatcgcaaggactaaaaaccaa-----acatattctca-ctcataggtgggaattgaaccatgagaacacttggacacaggaaggggaacatcacacaccggggactgttgtggggt--ggggggaagggggaggaatagcgttaggagatatacctaatgct------------------------acaccaacatggcacatg-tatacgtatg-taacaaacctgcaca-ttg-tccacatgtaccctaaaacttaaagtataataataataataataataataataataatagtaataataaG
s panTro5.chrX                 265328 1247 + 155549662 TCCATTCTTCCATTGTAGCAGCAGCGTACACTGCCCAGCCCGGGCTGCATTTCC---ACTTTCTGTGACCTGGTGTGGCT-GTGAGTCTTACTCGGTGTGCTTGAGTCGAAATG-TCACCAGCTGCCCGCCGACC---TGGGATGACACCTTGGG-CCGTTCTGTTTTCTCCCGTTCACTGGTCAAGACACTGAAACTCGGGAGCTTTTGGCGGCCGAGCTGTGTGGAGGGACTTCAAGAGACGAGGAGACGGACCCCGTGG-AAACCTCTCCCACCTGGCGATTGGTGAGGGGGACAGAGGCGA-CCGCAGAGGCG-GTTTCAT--TTTGTGCTTTGAGACGGCCG-TTTTGAGGTTGGGAGGCAGCCGCGATGGGAGTTGGGTTTGTCAATGGCA---TTTTTTTttttacttttttattattatactttaagttctaggctacatgtgcacaacgtgcaggttagttacataggtatacatgtgccatgctggtgtgctgcacccattaactcgtcattgacattgggtatatctcctaatgctgtccctccaccctcccccaggaaac-aacaggtgctggagaggatgtggagaaataggaacacttt-tacactgttggtgggaatgtaaactagttcaaccattgtggaagacagtgtggcgattcctcagggatctagaactagaaatac-catttgacccagccatcccattactgggtatatacccaaaggact--ataactcatgctgc--tataaagacacatgcacacgtatgtttctt-gtggcactatt-cacaatagcaaagacttggaaccaacccaaatgtccaacaacgatagactgcagtaag-aaaatgtggcacatagacaccatggaatactaatgcagccatgaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactcacacagaaacagaaaaccaaacatcacatgttctca-ctcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctattgtgaggttgggggggagaggggagggagagcattagaagatatacctaatgttaaatgatgaattaatgggtgccgcacaccaacatggcacatg-tatacatatg-taacaaacctgcacg-ttg-tgcacatgtaccctaaaacttaaagtataataataataataataat-ataataatgataataataataaA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  26150 1201 -    177848 TCCATTCTTCCATTCTAGCAGCAGCATACACTGCCCAGCCCGGGCTGCGTTTCCAG-ACTCTCTGTGATCTGGTGTGGCT-GTGAGTCTTACTCAGTGTGCTTGAGCCGAAATG-TCACCAGCTGCCCGCCGACC---TGGGATGTCACCTTGGG-CCGTTCTGTTTTCTCCCGTTCACCGGTCAAGACACTGAAACTCGGGAGCTTTTGGCGGCCGAGCTGCATGAAGGGACTTCAAGAGATGAGGAGACGGACCCCGTGG-AAACCTCTCCCACCTGGCGATTGGTGAGGGGGACAGAGGCGA-CGGCAGAGGCG-GTTTCAT--TTTGTGCTTTGAGACGGCCG-TTTTGAGGTTGGGAGGCAGCCGCGATGGGAGTTGGGTTTGTCAATGGCATTTTTTTTCTTTtttcttttttattattatactttaagatttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtgccatgttggtgtgctgcacccactaactcgtcatttacattgggtatatctcctaaagctatccctcccccctccccGaggaaac-aacaggtgctggagaggatgtggagaaataggaacacttt-tacactgttggtgggagtgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaatac-cctttgacccagccatcccattactgagtatatacccaaaggaat--ataaatcatgctgc--tataaagacacatgcacacgtatgtttatt-gcggcactatt-cacaataacaaagacttggaaccaacccaaatgtccaacaacgatagactggattaag-aaaatgtggcacatatacaccatggaatact-atgcagccatcaaaaaggatgagttcatgtcctttgtagggacgtggatgaaattggaaatcatcattctcagtaaactatagcaaggactaaaaaccaaacactgcatgttctca-ctcataggtgggaattgaacaatgagaacacatggacacagcgtggggaacatcacacatcggggcctgttgtggggt-ggggtggagggaggacggatagcattaggagatatacctaatgct------------------------ataccaacatggcacatg-tatacgtgta-taacaaacctgcacg-ttg-tgcacatggaccctaaaacttaaagtgtaataataataata--------------------------aaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       178331 1226 +    417917 TCCATTCTTCCATTGTAGCAGCAGCATACACTGCCCAGCCCGGGCTGCGTTTCCAGAACTCTCTGTGACCTGGTGTGGCTAGTGAGTCTTACTCAGTGTGCTTGAGCCGAAATGATCACCAGCTGCCCGCCGACCATATGGGATGTCACCTTGGGCCCATTCTGTTTTCTCCCGTTCACCGGTCAAGACACTGAAACTCGGGAGCTTTTGGCAGCCGAGCTGCATGAA-GGACTTCAAGAGATGAGGAGACGGACCCCGTGGAAAACCTCTCCCACCTGGCGATTAGTGAGGGGGACAGAGGCGACCGGCAGAGGCGCGTTTCATTGTTGGTGCTTTGAGACGGCCGATTTTGAGGTTGGGAGGCAGCCGCGATGGGAGTT-GGTTTGTCAATGGCA---TTTTTTTCTttttctttttcttattatactttaagatttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtgccatgttggtgtgctgcacccactaactcgtcatttacattgggtgtatctcctaaagctatccctcc-ccctccccAaggaaacaaacaggtgctggagaggatgtggagaaacaggaacactttacatactgttggtgggagtgtaaactagttcaaccattgt-gaagtcagtgtggtgattcttca-ggatctagaactagaaatacgcctttgacccagccatcccattactgagtatatacccaaaggaattaataaatcatgctgctatataaagacacatgcacacgtatgtttattggcggcactattacgcaataacaaagacttggaaccaacccaaatgtccaacaacgatagactggattaagaaaaatgtggcacatatacaccatggaatact-atgcagccatcaaaaaggatgagttcaatgtctttgtagggacgtggatgaaattggaaatcatcattctcagtaaactat-acaaggactaaaaaccaaacactgcatgttctcagctcatag--tggaattgaacaatgagaacacatggacacagtgtggggaacatcacacatcggggcctgttgtggggt-ggggtggagggaggacg-atagcattaggagatata-ctaatgct---------------------tataaaccaacatggcacatgttatacgtatattaacaaacctgcacgattgttgcacatgga-cctaaaacttaaagtat--taataatga--------ataataataaaa--------aaa
i gorGor5.CYUI01015925v1       I 348 C 0
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e otoGar3.GL873584             161991 6043 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=8104.000000
s hg38.chrX_KI270880v1_alt     118389 10 +    284869 CTGACCAGGA
s panTro5.chrX                 266575 10 + 155549662 CTGACCAGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27351 10 -    177848 CTGACCAGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179557 10 +    417917 CTGACCAGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             168034 10 +  11138919 CTAATCAGGG
i otoGar3.GL873584             I 6043 C 0
e manLeu1.NW_012108508v1        77588 2183 -    350446 I
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=2120.000000
s hg38.chrX_KI270880v1_alt     118399 2 +    284869 TT
s panTro5.chrX                 266585 2 + 155549662 TT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27361 2 -    177848 TT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179567 2 +    417917 TT
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1        79771 2 -    350446 TT
i manLeu1.NW_012108508v1       I 2183 C 0
s otoGar3.GL873584             168044 2 +  11138919 TC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       151903 2253 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=30982.000000
s hg38.chrX_KI270880v1_alt     118401 19 +    284869 TCCCCTCAGAAGGGCCCTT
s panTro5.chrX                 266587 19 + 155549662 TCCCCTCAGAAGGGCCCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27363 19 -    177848 TCCCCTCAGAAGGGCCCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179569 19 +    417917 TCCCCTCAGAAGGGCCCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       154156 19 -   1025902 TCCCCTCGGAAGGGCCCTT
i cerAty1.NW_012001098v1       I 2253 C 0
s manLeu1.NW_012108508v1        79773 19 -    350446 TCCCCTCGGAAGGGCCCTG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             168046 18 +  11138919 -CTCTTTAGAATGGCTCTT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             159566 14883 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=64535.000000
s hg38.chrX_KI270880v1_alt     118420 47 +    284869 TCCCTGAGGGTCTTCGC---TCCC-CGAGGC-GG---------ACCCT--ACAGTGATCCGTG
s panTro5.chrX                 266606 47 + 155549662 TCCCTGAGGGTCTTCGC---TCCC-CGAGGC-GG---------ACCCT--ACAGTGATCCATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27382 47 -    177848 TCCCTGAGGGTCTTCGC---TCCC-CGAGGC-GG---------ACCCT--ACAGTGATCCGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179588 51 +    417917 TCCCTGAGGGTCTTCGC---TCCCTCGAGGCAGG---------ACCCCTAACAGTGATCCGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       154175 47 -   1025902 TCCCTGCGGGTCTCGGC---TCCC-CGAGGC-GG---------ACCCG--ACGGTGATCCGTG
i cerAty1.NW_012001098v1       C 0 I 107
s manLeu1.NW_012108508v1        79792 47 -    350446 TCCCTGCGGGTCTCGGC---TCCC-CGAGGC-GG---------ACCCT--ACGGTGATCCGTG
i manLeu1.NW_012108508v1       C 0 I 109
s saiBol1.JH378345             174449 56 +    465904 TCCGCGAGGGTCTTAAC---TCAC-TAGGGT-GGGGGGGGGGAGCTCT--TCCCTGATCCCTG
i saiBol1.JH378345             I 14883 I 6
s otoGar3.GL873584             168064 50 +  11138919 TCCTGGGGATTCTGAGTGTGTCCC-ACATGT-GG---------ACCCT--GCAGTGACTTGTC
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=50356.000000
s hg38.chrX_KI270880v1_alt     118467  99 +    284869 --TGGGGGTTCCTGGGGCGGCGGTCGTCCCCTCCCGG---GGGGTCTCCTGGCA--CCG-ATCTCACCTGC-GGGAGCCTCTCCGGCCTGGCTCTTTGATG--------------TGCAGAG
s panTro5.chrX                 266653  99 + 155549662 --TGGGGGTTCCT-GGGCGGCGGTTGTCCCCTCTCGG---GGGGTCTCCTGGCA--CCG-ATCTCACCTGCGGGGGGCCTCTCCGGCCTGGCTCTTTGATG--------------TGCAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27429  95 -    177848 --TGGGGGTTCCT-GGGCGGCGGTCGTCCCCTCCC------AGGTCTCCTGGCA--CTG-ATCTCACCTGC-GGGGGCCTCTCCGGCCTGGCTCTTTGATG--------------TGCAGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179639  94 +    417917 --T-GGGGTTCCT-GGGC-GCGGTCGTCCCCTCCC------AGGTCTCCTGGCA--CTGTATCTCACCTGC-GGGGGCCTCTCTGGCCTGGCTCTTTGATG--------------TGCAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             174511 104 +    465904 --CTGGGGTTCCT-GG---ACGGCCGTCCCCTCCC------GGACCCCTT--CC--CTG-ATGTCACCTGCAGGGAGCGTCTCCGGCCCGCGGCTTTGATGCCCGCGG-CTGACACCCAGAG
i saiBol1.JH378345             I 6 C 0
s otoGar3.GL873584             168114 116 +  11138919 CTGGGGAGCCTCT-GATAGAGGGAGGTCCCTTCGCAGATAGGTGTCTGCAAACAGGCCA-GTGTCACCTGT-GGTATTCCTCCCAAAACG-CCCTTTGATA--TGTAGTCTGACACTCAGAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        79839 109 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154222 107 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       229480 2085 +  25972781 I

a score=76210.000000
s hg38.chrX_KI270880v1_alt     118566 75 +    284869 ATGGCG-AAGAAGAAAATAAC-TTTAAAAATGGTGAGAA-GCCGTCATTGAAGTTAACATAAAAGAGGATGACGCGGG
s panTro5.chrX                 266752 75 + 155549662 ATGGCG-AAGAAGAAAATGAC-TTTAAAAATGGTGAGAA-GCCGTCATTGAAGTTAACATAAAAGACGATGACGCGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27524 75 -    177848 ATGGCG-AAGAAGAAAATAAC-TTTAAAAATGGTGAGAA-GCTGTCATTGAAGTTAACATAAAAGAGGATGATGCGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179733 74 +    417917 ATGGCGAAAGAAGAAAATAAC-TTT-AAAATGGTGAGAA-GCTGTCATTGAAGTTAACATAAAAGAGGATGACGC-GG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       231565 75 +  25972781 ATGGCG-AAGAAGAAAATAAG-TTTCCAAACGGTGAGAAGGTCCTAATCGAAGTGAACATAAAAGCCGGTGACGCCG-
i macNem1.NW_012017243v1       I 2085 C 0
s saiBol1.JH378345             174615 74 +    465904 ACGGCG-CAGAAGAAAATAACGTTTACAAATCGTGAGCG-ACCCTCCTTGAAGTCAACATAAAAGAGG-CGACGCGA-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             168230 72 +  11138919 GTGGTA-AAAATGAAAATAAC-TCAAAAAATTTTAAGAA-ACCCTAATTGCAGTTAACATAAAAGAAG-CTACATG--
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        79839 109 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154222 107 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I

a score=287532.000000
s hg38.chrX_KI270880v1_alt     118641 118 +    284869 GTGTTAATTGGTCTGTCTCTGGCATAATTTGGGCCCGGGAGACGGGGTCCCTGGGCCCCTCGCCC----GAGAGCGGAGACTCACATCTTTAATTCAGCAATCTTTGTATTAATTACCTCCG
s panTro5.chrX                 266827 118 + 155549662 GTGTTAATTGGTCTGTCTCTGGCATAATTTGGGCCCGGGAGACGGGGTCCCCGGGCCCCTCGCCC----GAGAGCGGAGACTCACATCTTTAATTCAGCAATCTTTGTATTAATTACCTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27599 118 -    177848 GTGTTAATTGGTCTGTCTCTGGCATAATTTGGGCCCGGGAGACGGGGTCCCTGGGCCCCTCGCCT----GAGAGCAGAGACTCACATCTTTAATTCAGCAATCTTTGTATTAATTACCTCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179807 115 +    417917 GTGTTAATTGGTCTGTCTCTGGCATAA-TTGGGCCCGGGAGACGGGGTCCCT-GGCCCCTCGCC-----GAAGGCGGAGACTCACATCTTTAATTCAGCAATCTTTGTATTAATTAACTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       231640 117 +  25972781 -TGTTAATTGGTCCGTCTCCGGCATCATTTGGGCCTGGGAGACGAGGTCCCCGGGCCCCTCGCCG----GATTGTGGAGACTCACATCTTTAATTCAGCGATCTTTGTATTAATCACCTCCG
i macNem1.NW_012017243v1       C 0 I 148
s cerAty1.NW_012001098v1       154329 118 -   1025902 GTGTTAATTGGTCCGTCTCCGGCATCATTTGGGCCTGGGAGACGAGGTCCGCGGGCCCCTCGCCG----GATTGTGGAGACTCACATCTTTAATTCAGCGATCTTTGTATTAATTACCTCCG
i cerAty1.NW_012001098v1       I 107 I 52
s manLeu1.NW_012108508v1        79948 118 -    350446 GTGTTAATTGGTCCGTCTCCGGCATCATTTGGGCCTGGGAGACGAGGTCCCCGGGCCCCTCGCCG----GATTGTGGAGACTCACATCTTTAATTCAGCGATCTTTGTATTAATTACCTCCG
i manLeu1.NW_012108508v1       I 109 I 52
s saiBol1.JH378345             174689 117 +    465904 -TGTTAATCGGTCCGTCTCCGGCGTCGTCTGGGCCTCGGAGACCACGTCCCCCGGCGCCACGGCC----GAGAGGCGGGACTCGCATCTTTAATTCAGCGATCTGTGCGTTCATGACCTCTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             168302 119 +  11138919 GTGTTAATTGGTCTGTCTCAGGCCTAATTTGGGCCTCAGAGACCATGTCCCTCTGCCCCCCCCACCCAAAATGTCAAGGGCTCACATCTTTAATTCAACAACCTTTGTGTTAATTACCT---
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I

a score=24102.000000
s hg38.chrX_KI270880v1_alt     118759 47 +    284869 CATAGGTACGCTTTGATTGGGAGCGCTTTCTTAT-AAAATCACAGCG-A
s panTro5.chrX                 266945 48 + 155549662 CATAGGTACGCTTTGATTGGGAGCGCTTTCTTAT-AAAATCACAGCGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27717 48 -    177848 GATAGGTACGCTTTGATTGGGAGCGCTTTCTTAT-AAAATCACAGCGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179922 48 +    417917 GATAGGTACGCTTTGATTGGAGCCGCTTTCTTATAAAAATCACAG-GTA
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             174806 48 +    465904 GCTGGGTGAGCTTCCATGAGGAGCGCTTGATGAT-CGCGTTACACGCTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             168421 37 +  11138919 ----------CTTATAGTGGGAGCCCTTTATTAT-GAAATTTCAGTGC-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80066 52 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154447 52 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231757 148 +  25972781 I

a score=40567.000000
s hg38.chrX_KI270880v1_alt     118806 26 +    284869 TCGTCTGCCTT-AAGATAAATAGATGA
s panTro5.chrX                 266993 26 + 155549662 TCATCTGCCTT-AAGATAAATAGATGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27765 26 -    177848 TCGTCTGCCTT-AAGATAAATAGATGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179970 25 +    417917 TCGTCTGCCTTAAAGATAAATAGAT--
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       154499 26 -   1025902 TCGTCTGCCTT-AAGATAAATAAATGA
i cerAty1.NW_012001098v1       I 52 I 74
s manLeu1.NW_012108508v1        80118 26 -    350446 TCGTCTGCCTT-AAGATAAATAAATGA
i manLeu1.NW_012108508v1       I 52 I 73
s saiBol1.JH378345             174854 26 +    465904 CCGTCTGCCTT-CACAGCGATAAACAA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             168458 26 +  11138919 ATGGTGGCCTC-AAGATAAATAAATTA
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231757 148 +  25972781 I

a score=25314.000000
s hg38.chrX_KI270880v1_alt     118832 47 +    284869 GAGTTGAGCTGGGGGAAG----------------AAAAAAAAAAAAAAACAGTTCATTCGACT
s panTro5.chrX                 267019 46 + 155549662 GAGTTGAGCTGGAGGAAG-----------------AAAAAAAAAAAAAACAGTTCATTCGACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27791 42 -    177848 GAGTTGAGCTGGGGAAAG---------------------AGAAAAAAAAGAGTTCATTCGACT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       179995 46 +    417917 GAATTGAGCTGGGGAAAG-----------------AAAAAAAAAAAAAAGAGTTCATTCGACT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             174880 56 +    465904 GACTTTAATTTGGGGAAGAAAA-------TTaaaaaaaaaaaaaaaaaaaaGTTTGTccagct
i saiBol1.JH378345             C 0 I 1402
s otoGar3.GL873584             168484 55 +  11138919 GAGTTGAACTAGGGAAGAAAGGCCTCTCTCTAAGGGAGAACAGGAGAGACATTTC--------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80144 73 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154525 74 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231757 148 +  25972781 I

a score=99598.000000
s hg38.chrX_KI270880v1_alt     118879 228 +    284869 CTGAATATCAAATT-CAGGATAAAACACCACTGATTCTCGGTCATTCTCAGTAG--------GGGAAGGAGCTTCTATTCTTGACCCAGCCCACGACACGTGCCGGGGCTGTCAGCGCCGTGAGAGGCA-CCTGTGTCTCCCCGAGCTGAGGACGGATGACATTT-GTACCTACAGGTTTGTATACGGTCCTGGGAGGTGC---CTCC--TTGCCAGTGAAGGACCAGAACTCACGGCCGGCCA
s panTro5.chrX                 267065 228 + 155549662 CTGAATATCAAATT-CAGGATAAAACACCACTGATTCTCGGTCATTCTCAGTGG--------GGGAAGGAGCTTCTATTCTTGACCCAGCCCACGACACGGGCAGGGGCTGTCAGCGCTGTGAGAGGCA-CCTGTGTCTCCCCGAGCTGAGGACGGATGACATTT-GTACCTACAGGTTTGTATCCGGTCCTGGGAGGTGC---CTCC--TTGCCAGTGAAGGACCAGAACTCACGGCCGGCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  27833 228 -    177848 CTGAATATCAAATT-CAGGATAAAACACCACTGATTCTCGGTCATTCTCAGTGG--------GGGAAGGAGCTTCTATTCTTGAGCCAGCCCACGACACGGACCGTGGCTGTCAGCGCTGTGAGAGGCA-CCTGGGTCTCCCCGAGCTGAGGACGGATGAGATTT-GTACCTACAGCTTTGTATCCGGTCCTGGGAGGTGC---CTCC--TTGCCAGTGAAGGACCAGAACTCACGGCCGGCCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180041 220 +    417917 CTGAATATCAAATTCCAGGATAAAACACCACTGATTCTCAGTCATTCTCA-TGG--------GGGAAGGAGCTTCTATTC-TGACCCAGCCCCAGACACGGGCCGTGGC--GTAGC-CTGTGAGAGGCACCCTGGGTCTCCCCGAG-TGAGGACGGATGAGATTTGGTACCTACGGGTTTGTATCCGGTCCT-GGAGGTG----CTCC--TTGCCA-TGAAGGAC--AGACTCATGGCCGGCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             168539 212 +  11138919 ---CACATCAAATT--GGGATTAGGGAGCAGTTCTCCTCAGTCCTTCTTG-TAGCCCTTCCATGATAGGCACTTC---------CCCTGTGCATGAGGCTGGCCA-GGCTGGGGGT-CTGTGAG-GGCA-TCAGGATCCCATCTAAGGGAGGGGAAATGAAAGGT-CAACCCTGAGGCT------CTGTCCTGGATGGTCCACATTCCAGTTGCCACC-----ACTGGAACCCA-GCCCCTCTA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80144  73 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154525  74 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231757 148 +  25972781 I

a score=127832.000000
s hg38.chrX_KI270880v1_alt     119107 84 +    284869 TGGGTGCCCGGCGCCGGGATGGGCAGGAGCGGTGGC-------CCCAGGT---CCCGGGTGTGGGT-GAGGCCCCAGG-AAAGAGGAGAATTCACT------------
s panTro5.chrX                 267293 84 + 155549662 TGGGTGTCTGGCGCCAGGATGGGCAGGGGCGGTAGC-------CCCGGGT---CCCGGGTGTGCGT-GAGGCCCCAGG-AAAGGGGAAAATTCACT------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  28061 84 -    177848 TGGGTGCCTGGCGCCGGGATGGGCAGGAGCTGTGGC-------CCCAGGT---CCCGGGTGTGGGT-GAGGCCCCAGG-AAAGGGGAAAATTCACT------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180261 86 +    417917 TGGGTTGCCTGCGCAGGGATGGGCAGGAGCTGTGGC-------CCCAGGT--CCCCCGGTGTTGGT-GAGGCCCCAGGAAAAGGGGAAAATTCACT------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       231905 83 +  25972781 TGGGTGGCTGGTGCCGGGATGGGCACGA-CTGTGGC-------CCCAGGT---CCCAGGTCTGGGT-GAGGCCCCAGG-AAAGGGAAAAATTCACT------------
i macNem1.NW_012017243v1       I 148 I 20205
s cerAty1.NW_012001098v1       154599 91 -   1025902 TGGGTGGCTGGTGCCAGGATGGGCAGGAGCTCTGGCCCCAGGTCCCAGGT---CCCAGGTCTGGGT-GAGGCCCCAGG-AAAGGGAAAAATTCACT------------
i cerAty1.NW_012001098v1       I 74 I 6288
s manLeu1.NW_012108508v1        80217 84 -    350446 TGGGTGGCTGGTGCCGGGATGGGCAGGAGCTGTGGC-------CCCAGGT---CCCAGGTCTGGGT-GAGGCCCCAGG-AAAGGGAAAAATTCACT------------
i manLeu1.NW_012108508v1       I 73 I 5303
s otoGar3.GL873584             168751 88 +  11138919 --------TGGTGCCTAGAGGTCAGGGAAATGGGGC-------CACAGGGGGGCCCAGGCCTGGGGAGAGG----AGG-GGAGGGACAAAAACAGAAGAAGGGATCCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I

a score=4590.000000
s hg38.chrX_KI270880v1_alt     119191 11 +    284869 GGGAAAATGCA
s panTro5.chrX                 267377 11 + 155549662 GGGAAAATGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  28145 11 -    177848 GGGAAAATGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180347 10 +    417917 GGG-AAATGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             168839 11 +  11138919 CGAAAAACACA
i otoGar3.GL873584             C 0 I 11230
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=45497.000000
s hg38.chrX_KI270880v1_alt     119202  85 +    284869 GAGCTGA-----------------------------------------GGGAAAAGACAGGGGTGTCCCGGGGACCCGT-CCagaccgcaggatggtgtgaggccgggaggtggacgcggcggtgag
s panTro5.chrX                 267388 123 + 155549662 gaggtgagcaaagagg---aggggaggggtgctgcaggtggagggggtgggaAAAGACAGGGGTGTCCCGGGGACCCGT-CCAGACCGCAGGATGGTGTGAGCCCGGGAGGTGGACGCGGCGGTGAG
i panTro5.chrX                 C 0 T 18629
s panPan2.chrUn_NW_014024190v1  28156 123 -    177848 GAAGTGAGCAAAGAGG---AGGGGAGGGGTCCTGCAGGTGGAGGGGGTGGGAAAAGACAGGGGTGTCCCAGGGACCCGT-CCagaccgcaggatggtgtgagcccgggaggtggacgcggcggtgag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180357 125 +    417917 GAAGTGAGCAAAGGAGGCAGGGGAGGGGGTCCTGCAGGTGGA-GGGGTGGGAAAAGACAGGGGTGTCCCGGGGACCCGTCCCAGACCg-aggatggtgtgagcccgggaggtggacgcggtggtgag
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=22498.000000
s hg38.chrX_KI270880v1_alt     119287 41 +    284869 ctgtgattgcgccactgcactccagcctgggtgacagggca
s panTro5.chrX                 248882 41 + 155549662 ctgtgattgcaccaccacactccagcctgggtgacagggca
i panTro5.chrX                 T 18629 I 18588
s panPan2.chrUn_NW_014024190v1  28279 41 -    177848 ctgtgattgcaccaccacactccagcctgggtgacagggca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180482 41 +    417917 ctgtgattgcaccaccgcactccagcctgggtgacagggca
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=12727.000000
s hg38.chrX_KI270880v1_alt     119328 39 +    284869 acaccctgtctctctctctctctctctctctcttttttg
s panTro5.chrX                 267511 38 + 155549662 AGACCCTGTCTCTCTCTCACtctct-ttttttttgtttg
i panTro5.chrX                 I 18588 C 0
s panPan2.chrUn_NW_014024190v1  28320 32 -    177848 agaccctgtctctctctctctctct-------cttcttg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180523 36 +    417917 agaccctgtctctctctctctctctctct---ttttttg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       226465 4875 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=24385.000000
s hg38.chrX_KI270880v1_alt     119367 31 +    284869 tttttgga-gatagagtctcgctctgtcaccc
s panTro5.chrX                 267549 31 + 155549662 tttttgga-gatagagtctcgctctgtcgccc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  28352 31 -    177848 tttttgga-gatagagtctcactctgtcaccc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180559 32 +    417917 tttttggatgatagagtctcgctctgtcaccc
i gorGor5.CYUI01015925v1       C 0 I 301
s colAng1.NW_012115411v1       231340 31 +   1230721 tttttgga-gaccgagtctcgctgtgtcgccc
i colAng1.NW_012115411v1       I 4875 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=40171.000000
s hg38.chrX_KI270880v1_alt     119398 50 +    284869 aggctggagtgcaggggcgtgatctcggctctctgcaacctccgcctccc
s panTro5.chrX                 267580 50 + 155549662 aggctggagtgcaatggcgtgatctcggctcactgcaacctccgcctccc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  28383 50 -    177848 aggctggagtgcagtggcacgatctcggctcactgcaacctccgcctccc
i panPan2.chrUn_NW_014024190v1 C 0 I 297
s gorGor5.CYUI01015925v1       180892 50 +    417917 aggctggagtgcagtggtacgatctcggctccctgcaacctccgcctcct
i gorGor5.CYUI01015925v1       I 301 C 0
s colAng1.NW_012115411v1       231371 50 +   1230721 aggctgcagggcggtggcgcgatctcggctcacggcaacctccgcctccc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=14697.000000
s hg38.chrX_KI270880v1_alt     119448 21 +    284869 gggttcaagccattctcctgc
s panTro5.chrX                 267630 21 + 155549662 gggttcaagcgattctcctgc
i panTro5.chrX                 C 0 I 297
s panPan2.chrUn_NW_014024190v1  28730 21 -    177848 gggttcaagcaattctcctgc
i panPan2.chrUn_NW_014024190v1 I 297 C 0
s gorGor5.CYUI01015925v1       180942 20 +    417917 gggttcaagcaattct-ctgc
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       231421 21 +   1230721 gggttcacgccgttctcccgc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=168700.000000
s hg38.chrX_KI270880v1_alt     119469 227 +    284869 ttcagcctcccgagtagctgggatgacaggcacctg-ccagcacgcccggctgattttgtat-ttttagtagagatggggtttcaccatgttggtcaggctggtctcgaactcatgag-ctcaggggatccgcctgcctcagcctcccagagtgct-gggatgacaggtgtgagccactg-cgcccggccAGGAATCAGTTTTTATTACGCTCAAAATCCCCTAAAAACTAG
s panTro5.chrX                 267948 227 + 155549662 ttcagcctcccgagtagctgggattacaggcacctg-ccagcacgcccagctaattttgtat-ttttagtagagatggggtttcaccatgttggtcaggctggtcttgaactcatgag-ctcaggggatccgcctgcctcagccccccaaagtgct-gggatgacaggtgtgagccactg-ggcccggccAGGAATAAGTTTTTATTACACTCAAAATCCCCTAAAAACTAG
i panTro5.chrX                 I 297 C 0
s panPan2.chrUn_NW_014024190v1  28751 227 -    177848 ttcagcctcccgagtagctgggattacaggcacctg-ccagcacgcctgggtgattttgtat-ttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcatgag-ctcaggggatctgcccgcctcagccccccaaagtgct-gggatgacaggtgtgagccactg-cgcctggccAGGAATAAGTTTTTATTACGCTCAAAATCCCCTAAAAACTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       180962 228 +    417917 ttcagcctcccgagtagctgggattacaggcacctgcccagcacgcctgggtgattttgtat-ttttagtagagac-gggtttctccatg-tggtca-gctggtcttgaactcatgagcctcaggggatctgcccacctcagccccccaaagtgctggggatgacaggtgtgagccactgccgcccggccAGGAATAAGTTTTTATTACGCTCAAAATCCCCTAAAAACTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       231442 228 +   1230721 ctcagcctcctgaggagctgggatgacaggtgcgca-cggccgtgcccggctaattctttgtattttaggagagacggggtttcaccaggttggccaggctggtctcgaactcatgag-ctcacgtgatccgcccgcctcggcctcccaaagggct-gggacgacaggcgtgagctgccg-cgcccggccGGGAGTAAGTTTTTATTCTGCTCAAAGTCCCCTAAAAACTAG
i colAng1.NW_012115411v1       C 0 I 858
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=35663.000000
s hg38.chrX_KI270880v1_alt     119696 104 +    284869 GCACCAGGGGAGGATGAACTGGCTCagagagaaagagagagagacaca-----------gagacagagacaaag-agagaggcagagagacagagacaaagagaaagagagataga
s panTro5.chrX                 268175  78 + 155549662 GCACCAGGGGAGGATGAACTGGCTcagagagaaagagagagagagaca--------------------------------------gagacagagacaaagagagaggcagagaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  28978 106 -    177848 GCACCAGGGGAGGATGAACTGGCTCagagagagagagagacagagacag-----agagagagagagagacaaag-agagaggcagagagacagagacaaagagaaagagaga----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       181190 115 +    417917 GCACCAGGGGA-GATGAACTGGCTcagagagaaagagagagagacacaagagacagagagagagagagacaaagaagagaggcagagagacagagacaaagagaaagagagagaga
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=1272.000000
s hg38.chrX_KI270880v1_alt     119800 8 +    284869 gagagaga
s panTro5.chrX                 268253 8 + 155549662 cagagaca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       181305 8 +    417917 tagagaga
i gorGor5.CYUI01015925v1       C 0 I 14
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  29084 0 -    177848 C

a score=8632.000000
s hg38.chrX_KI270880v1_alt     119808 277 +    284869 aagagagacagacgcagagagacaaagagagatggagagacagagaaagagacacagagagaggcagagacagagaaagaaagagaggcagagacagacggagagatacaaagatggagagacagaga--gagacagagagggacagagagatacagatacagagagagacgtagagacacagagagaga--caaagacggagagacagagagagacagagagatacacacagagagacagagacagagacagcagacggagagagagagagatggagatg
s panTro5.chrX                 268261 205 + 155549662 aagaga------------------aagagagatagagagaca----aagagatacagagagag----agacagaga--------gagacagagagagacaaagaga------gatggagagacagagaaagagacacagagagacgcagagacagagaaagagagacaaaggcagagacagagggagagatacaaagatggagagacagagagagacagagagg--------gacagagagatacagatacag----------------------------
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       181313  14 +    417917 I
e panPan2.chrUn_NW_014024190v1  29084   0 -    177848 C

a score=4362.000000
s hg38.chrX_KI270880v1_alt     120085 17 +    284869 gagagagacagagacac
s panTro5.chrX                 268466 16 + 155549662 -agagagacagagacac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  29084 17 -    177848 gagagagacagagatac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       181313 14 +    417917 I

a score=221162.000000
s hg38.chrX_KI270880v1_alt     120102 673 +    284869 agagagagacagacacagagagagacagagagacaaagatgg-agagacagagac----agagagacagagacacacagagagacagagacagagagacacagagagagacagac--agagagatggagagacag-----agagacacagagagaggcagagacagagacagaaagacagagaggcagagacagagggagagatacaaagatggagagacagagagagacagagagggacagagagatacagatacagagagacgtagagacacagagagagacaaagacagagagac------------------aga--gagagacagagagatac------acacagagagacagagacacagagacag-cag--------------acggagagagacagatggagatggagagagacagagacacagagagagacagagacacagagagagacagagagacaa------agatggagagac----agagacagagagacagatacacacagagagacagagacagacacagagagagacaga------cagagagatg----gagagacagagagacacagagagaggcagagacagagaaacagagagacagagag--acagaga--cacagacagagacagagacagggaaggaaggaagggagggagggaaggaggaaatgaaaccaaagaaaggaaagaaaAA-CCCCCAAGAGTCACAATCAATATACGTCCTGCACAAAT
s panTro5.chrX                 268482 609 + 155549662 agaga----cagagacgtagagacacagagagacagagacaa-agacggagagac----agagagacagagataca--gagagacagagatagagacagacagagaaa--cagac--acagagacagagagacag-----agagagacggacagagagagagacagagacacagagacagagag--------------------acaaagatggagagacaga--------------------------cagataca--------cacagagacagagacagacaaagatggagagac------------------agacagagagacagagagatac------acacagagagacagagacagagacacagagag--------------acagagagacacaga--------gacagagacagagaaacagagacagacagagacagagagatacacacagagaaac------agacagagagac----agagagacagagacagagaaacagagacagagacagagagacacagagagagacagagacagacagagagatg----gagaggcagaga--cacagagagaggcagagacagagagtcagagaaacagagag--acagagagtcagagacacagacagagacagggaagggagggagggagggaggga----ggaaatgaaaccaaagaaaggaaagaaaaAACCCCCAAGAGTCACAATCAATATACGTCCTGCACAAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  29101 722 -    177848 agagagagagagacaaagatagaggcagagagacagagacaa-agagaaagagaaagagagagagacaaagagatacggagagagagagacagagagagacacagacagagagacaaagagagatggagagacagag-aaagagacacagagagaggcagagacagagaaagagagacaggcag--------agacagagagatac-aagatggagagacaga----gacagagagcaacagagagatacagatacagagagagacagagacacagagacagacagagacgtagagacacag--agacagagacaaagacggagagacagagagagacagagagatacagagagacagagatagagacagagagagacac------agacacagagacagacagagagagagggacagagacagagagacagagagatacacacagagagacagagacagagagacac----agagacagagagacacagagagagacagagacagagacacagagagagacagagacag--agaaacagagacagagacagacagagagatggagagagagacagagagacacagagagaggcagagacagagaaacagagagacagagagatacagagagacagagacacagacagagacagagaaggaagggagggagggagggaggaaggaaatgaaaccaaagaaaggaaagaaaaAACCCCAAAGAGTCACAATCAATATACGTCCTGCACAAAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       181327 711 +    417917 agagagagagagacaaagatagaggcagagagacagagacaagagagaaagagag----agagagacaaagagatacagagagagagagacagagagagacacagacagagagacaaagagagatgaagagacagagaaaagagacacagagagaggcagagacagagaaagagagacaggcag--------agacagagagatacaaagatggagagacaga--gagagacagagggacagagagatacagatacagagagag-aagagacacagagacagacagagacgtagagacacagaaagacagagacaaagacggagagacagagacagag-----gatacagagagacagagatagagacagagagagacacacacagagacaaagagagagacagagagaga--gacagagacagagagacaga-agatacacacagagagacagagacagagagacacagagagagacagagagacacagagagaaacagagacagagaaacagagacagacagagacagagagagacagagacaga---caagagagagatggagagagagacagagagacacagagagaggcagagacagagagacagagagat--------acagagagac-gagacacagacagagac--ggaaggaagggagggagggaggga-ggaagaaatgaaaccaaagaaaggaaagaaaaa-aCCCGAAGAGTCA-AATCAATATACGTCCTGCACAAAT
i gorGor5.CYUI01015925v1       I 14 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e otoGar3.GL873584             168850 11230 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=69638.000000
s hg38.chrX_KI270880v1_alt     120775 153 +    284869 TCCTGCAGTTTCCAGGAGGTTCCCGCAGCTCCCCGGGGCCCGCCACCCCCCGCCACCCCCCACCCACTCCCAGAGCCGCCTCCTTCAACACCCCGACGTGCTTCATCTACCACGAGGCCCACGGCGGCTTCCGGAATATGCGGCAACtt-----------ttta---------------
s panTro5.chrX                 269091 141 + 155549662 TCCTCCAGTTTCCAGGGGGTTCCCACAGCTCCCCCCGGCCCGCCACCCCCC----------ACCCACTCCCAGAGCCGCCTCCTTCCACACCCCGACGTGCTTCATTGACCACGAGGCCCACGGCGGCTTTCGGAAT--GCGGCAACTT-----------TTTA---------------
i panTro5.chrX                 C 0 I 24
s panPan2.chrUn_NW_014024190v1  29823 151 -    177848 TCCTCCAGTTTCCAGGAGGTTCCTACAGCTccccccggcccgccaccccccgccaccccccacccAGTCCCAGAGCTGCCTCCTTCAACACCCCGACGTGCTTCATTTACCACGAGGCCCACGGCGGCTTTCGGAAT--GCGACAACTT-----------TTTA---------------
i panPan2.chrUn_NW_014024190v1 C 0 I 33
s gorGor5.CYUI01015925v1       182038 148 +    417917 TCCTCCAGTTTCCAGGAGGTTCCTACAGCTCCCCCCGGCCCGCCA-CTCCCGCCACCCCCCACCCAGTCCCAGA-CTGCCTCCTTCAACACCCCGACGTGCTTCATTTACCATGA-GCCCACGGCGGCTTTCGGAAT--GCGGCAACTT-----------TTTA---------------
i gorGor5.CYUI01015925v1       C 0 I 32
s otoGar3.GL873584             180080 156 +  11138919 TCCTGGGGTTCTCAGGGGAG--CTACAGGCCCCCCGGTCCAGCCAGTCCCTG-----------------TTGGAGCT--TTTATTCGGCAACGCGCCCTGTTTAATTTACAACGGGGCAGAACTCAGGTTTCACAAG--GAGGGAAGTTTGAGAAAAAAGTTTACAACCCCTCTTCTCA
i otoGar3.GL873584             I 11230 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=-1303.000000
s hg38.chrX_KI270880v1_alt     120928  5 +    284869 ttt------tt
s panTro5.chrX                 269256 11 + 155549662 TTTCTAGCATT
i panTro5.chrX                 I 24 C 0
s otoGar3.GL873584             180236  5 +  11138919 -----AGCGT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       182186 32 +    417917 I
e panPan2.chrUn_NW_014024190v1  29974 33 -    177848 I

a score=477.000000
s hg38.chrX_KI270880v1_alt     120933 2 +    284869 tt
s panTro5.chrX                 269267 2 + 155549662 TG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       182218 2 +    417917 TT
i gorGor5.CYUI01015925v1       I 32 C 0
s otoGar3.GL873584             180241 2 +  11138919 TT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  29974 33 -    177848 I

a score=2011.000000
s hg38.chrX_KI270880v1_alt     120935 10 +    284869 -tttattttta
s panTro5.chrX                 269269 10 + 155549662 -TCTTTTTTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30007 10 -    177848 -TTGTCTTTTT
i panPan2.chrUn_NW_014024190v1 I 33 C 0
s gorGor5.CYUI01015925v1       182220 10 +    417917 -TGTCTTTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             180243 10 +  11138919 GTCGTTTTTT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             174936 1402 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=34488.000000
s hg38.chrX_KI270880v1_alt     120945 61 +    284869 ----ttttttttAAGGGGTAAAAAAAGA--TAAAGCAAACACGGAACAG-----------CACACTCCTCCCGGCCTT
s panTro5.chrX                 269279 60 + 155549662 ----TTTTTTTAAGGGGGTAAAAAAAGA--TAAAGCAA-CACGGAACAG-----------CACACTCCTCCCGGCCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30017 60 -    177848 ----TTTTTTTAAGGGGGTTAAAAAAGA--TAAAGCAA-CACGGAACAG-----------CACACTCCTCCCGGCCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182230 62 +    417917 ----TTTTTTTTAAGGGGTAAAAAAAAGATTAAAGCAA-CACGGAACAG-----------CACACTCCTCCCAGCCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             176338 44 +    465904 ----TTTTTTTTAAAGG----AAAAAGA--------------GAAAAGG-----------CACATTCCTCCCGCCCG-
i saiBol1.JH378345             I 1402 C 0
s otoGar3.GL873584             180253 75 +  11138919 TTTTTTTTTTGGAAAGAGGaaaaaaaaa--gagagaga-gagaaaaaaaaaaaaaaCCCTCGCCTTCCTCCCAGTCTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       231670 858 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=230592.000000
s hg38.chrX_KI270880v1_alt     121006 187 +    284869 CCTTCTTCTGACACCGTTTTCCTTTAGAAGATCTGAAACTACAAGTCAGGACATGACACGTGGAGCGTCCCAGGCACGCGCAGCCTCTGCTGTTTGATTTCCGACGTGA--GTCTATAGGTGAGGCTGACAGGTTTCAGATGGAAGAGGCAGGGCAGACGCCTTTCAAGAGAGGCGCGTTGTCTGGGTA
s panTro5.chrX                 269339 187 + 155549662 CCTTCTTCTGACACCGTTTTCCTTTAGAAGATTTCAAACTACAAGTCAGGACATGACACGGGGAGCGTCCCAGGCACGCGCGGCCTCTGCTGTTTGATTTCTGACGTGA--GTCTATAGGTGAAGCTGACAGGTTTCAGATGGAAGAGGCAGGGCAGACGCCTTTCAAGAGAGGCACGTTATCTGGGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30077 187 -    177848 CCTTCTTCTGACACCGTTTTCCTTTAGAAGATTTCAAACTACAAGTCAGGACATGACACGGGGAGCGTCCCAGGCACGCGCGGCCTCTGCTGTTTGATTTCTGACGTGA--GTCTATAGGTGAAGCTGACAGGTTTCAGATGGAAGAGGCAGGGCAGACGCCTTTCAAGAGAGGCGCGTTATCTGGGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182292 187 +    417917 CCTTCTTCTGACACCGTTTTCCTTTAGAAGATCTCAAACTACAAGTCAGGACATGACACGGGGAGCGTCCCAGGCACACGCGGCCTCTGCTGTTTGATTTCTGACGTGA--GTCTATAGGTGAAGCTGACAGGTTTCAGATGGAAGAGGCAGGGCAGATGCCTTTCAAGAGAGGCGCGTTATCTGGGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       232528 187 +   1230721 CCTTCGTCTGACACCGTCTTCCCTTAGAACATCGCAAACGACAAGTCAGGACATGACAGGTGCCGCGTCGCTGGCACGCGCCGCCTCGGCCGTTGGATTTCTGACGTGACTCTCTATAGGCGAAGCTGACAGGTTTCAGACG--CGAGGCCGGGCGGACGCCTTTCCAGAGAGGCGCGTTCTGTGGGTA
i colAng1.NW_012115411v1       I 858 I 4330
s saiBol1.JH378345             176382 171 +    465904 GCTGCTCCTGACAGTGTTTGGCTTCAGAAGATCTCAGCGTACACGTCGGGACATGACACGGGGCCTGCGTTGGCCGC--------------GTTTGATTCCTGGCACGC--GTCGGGGCGTGCGGCTGACAGCTCTCAGATG--CAAGGCAGGGCCCGGGCCTTTCAAGACAGGAGCCTGATCGGGGCG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             180328 182 +  11138919 CCTTCTTCTGACACCGCTTCCCTTTAGAAGATCTCAGACTACAAGCGGGTACATGACATGCGGGGCGTCCC--CCGAGTACACCCTTTGC-GTTTGATTTATGACACGA--CTCTATAGGTGCGGCTGACAGCTTTCAGATG--GAAGCCGAGGCGGAGGGCTTTCAAGAGAGGCGGGTTATCCGGGTA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=200352.000000
s hg38.chrX_KI270880v1_alt     121193 206 +    284869 AATCCATCAAGGGTGCGTCCTGGGAGACGACGGGCCGCCTTTGTAGACAACGCCACGGCACGGG-GGCCCCCCACGCT-GGGCGCCCACCCCGGCTGGCTGACAGGCGGCCCCCGTTTCACCGTGATCACGAGTAAAAGCCAGTTCCCTGCAGGTTACGGGGCTGCTGTGTTTTGACATTGACCTTAATGCATAATTTAACCACAAAG
s panTro5.chrX                 269526 205 + 155549662 AATCCATCAAGGGTGCGTCCTGGGAGACGACGGGCCGCCTTTGTAGACAACGCCACGGCACGGG-GG-CCCCCACGCT-GGGCGCACACCCCGGCTGGCTGACAGGCGGCCCCCGTTTCACCGTGATCACGAATAAAAGCCAGTTCCCTGCAGGTTACGGGGCTGCTGTGTTTTGACATTGACCTTAATACATAATTTAACCACAAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30264 205 -    177848 AATCCATCAAGGGTGCGTCCTGGGAGAAGACGGGCCGCCTTTGTAGACAACGCCACGGCACGGG-GG-CCCCCACGCT-GGGCGCACACCCCGGCTGGCTGACAGGCGGCCCCCGTTTCACCGTGATCACGAATAAAAGCCAGTTCCCTGCAGGTTACGGGGCTGCTGTGTTTTGACATTGACCTTAATACATAATTTAACCACAAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182479 203 +    417917 AATCTATCAAGGGTGCGTCCTGGGAGACGACGGGCCGCCTTTGTAG--AACGCCACGGCACGGG-GG-CTCCCACGCTGGGGCGCACACCCCGGCTGGCTGACAGGCGG-CCCCGTTTCACCGTGATCACGAATAAAAGCCAGTTCCCTGCAGGTTACGGGGCTGCTGTGTTTTGACATTGACCTTAATACATAATTTAACCACAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             176553 198 +    465904 AGTCTGTGAAGGCCGCGTCTGGGGACCCGGCGGGCCGCCTTTGTAG--CCTGCCAGGGCGCGGGCAG-CCCCCACGCC-GGGCG--CACCCCGGCCGGCTGACAGCAGGCCCGGGCGTCACGGTCATCAGGCATCAAACGCGGCCCCCTGCAGCTTACACGGCCGCGG----CTGACACAGACCCTGATCCGACACTGAGCCGCGGAG
i saiBol1.JH378345             C 0 I 47
s otoGar3.GL873584             180510 197 +  11138919 AATCCATCACGG--GCGTCCTGGGAGACG-CGCGCCGGCTTTGTAG--AGCCCCGCGGAGCGGA-GG-CCCCCACGCT-GCGCGCG---CCCGGCTGGCTGACAGGCGGCCCACGCTTCACCGTAATCACGAATAAAAGCCAGCTCCCTGCAGGTTACAGAGCTGCTGTGTTTTGACATTGACCTTAATACATAATTTAACCACAAAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=35341.000000
s hg38.chrX_KI270880v1_alt     121399 53 +    284869 CATATGAGGTACGTGCAACCAGATGAGGAAAGGCCACAGGACTGGCAGGTAAC
s panTro5.chrX                 269731 53 + 155549662 CATATGAGGTACGTGCAATCTGATGAGGAAAGACCACAGGACTGGCAGGTAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30469 53 -    177848 CATATGAGGTACGTGCAACCTGATGAGGAAAGACCACAGGACTGGCAGGTAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182682 52 +    417917 CATACGAGGTACGTGCAA-CTGATGAGGAAAGACCACAGCACTGGCAGGTAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             180707 51 +  11138919 --CCTGAGCAGTGTGGAACAAGATGAGAAAAGACCACAGAACTGGCAAATAAA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176751 47 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=68177.000000
s hg38.chrX_KI270880v1_alt     121452 76 +    284869 GTGATGCTGAATCAGAAAGGATGTTTGTTCCCGATCGTGCGGACGT-GGGGGCCTCTGCCgaagagg-------------cggagagggg
s panTro5.chrX                 269784 76 + 155549662 GTGATGTTGAATCAGAAATGATATTTGTTCCTGATCGTGCAGACGT-GGGGGCCTCTGCCgaagagg-------------cggagagggg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30522 76 -    177848 GTGATGTTGAATCAGAAATGATATTTGTTCCTGATCGTGCAGACGT-GGGGGCCTCTGCCgaagagg-------------cggagagggg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182734 77 +    417917 GTGATGTTGAATCAGAAATGATATTTGTTCCTGATCGTGCAGACGTGGGGGGCCTCTGCCgaagagg-------------cggagagggg
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             176798 73 +    465904 GCCGGGCTGGATCAGAAGGGACATTTGTACCTGGTCGTGCAGACG--GGAGGCCTT--CAGAAGAGG-------------CAGGGAGGGG
i saiBol1.JH378345             I 47 I 1839
s otoGar3.GL873584             180758 84 +  11138919 GTGATGTTCAATCAGAAATCATATTTGTTCCCGATTGTGGAGATGC----GGCCTT--AAGAAGGGGGGCTGGGGTAGGACAGggagggg
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=13726.000000
s hg38.chrX_KI270880v1_alt     121528 18 +    284869 aggagggggaggaggagg
s panTro5.chrX                 269860 18 + 155549662 aggagggggaggaggagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30598 18 -    177848 aggagggggaggaggagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182811 18 +    417917 aggagggggaggaggagg
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             180842 18 +  11138919 aggggagcaggcaggagg
i otoGar3.GL873584             C 0 I 136
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=8910.000000
s hg38.chrX_KI270880v1_alt     121546 16 +    284869 CCGCGGTCGTGTCTGT
s panTro5.chrX                 269878 16 + 155549662 CCGCGGTTGTGTCTGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30616 16 -    177848 CCGCGGTTGTGTCTGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182829 16 +    417917 CCGCGGTTGTGTCTGT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             180860 136 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=33134.000000
s hg38.chrX_KI270880v1_alt     121562 44 +    284869 CCCAGGGCTGTCGAGGAGAAGTCGGTCTGGGGTCCTGGATGAGG
s panTro5.chrX                 269894 44 + 155549662 CCCAGGGCTGTCGAGGAGAAGTCGGTCTGGGGTCCTGGATGAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  30632 44 -    177848 CCCAGGGCTGTCGAGGAGAAGTCGGTCTGGGGTCCTGGATGAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182845 44 +    417917 CCCAGGGCTGTCGAGGAGAAGTCGGTCTGGGGTCCTGGATGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             180996 44 +  11138919 CCCAGGGCTGGCAAATGAAAGGCAGTCTGGGTTCTGTTATGAGG
i otoGar3.GL873584             I 136 I 58
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=173096.000000
s hg38.chrX_KI270880v1_alt     121606 373 +    284869 AGCAGAGCTCGGGGAGCTGTTAACATTTCCTGGGACAGCGATGGGCTTGGAGAGCCTCACTGTGCACACATGTGGCCTG-ttttttttatttttatttttagtttttgagatggagtctcgctctgttgcccaggctggagtgcaggggtgtgatctcggctcactgcaacctccacctcccgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccgccacgcccagctaa-ttttttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcgaactcctgacctccg--gatcagcccgcctcggcctcccaaagtgctgggatgacaggcgtgagc
s panTro5.chrX                 269938 369 + 155549662 AGCAGAGCTCGGGG-GCTGTTAACATTTCCTGGGACAGTGATGGGCTTGGAGAGCCTCACTGTGCACACATGTGGCCTG-----ttttatttttatttttattttttcagatggagtctcactctgtcgcccaggctggggtgcaatggtgcgatctcagctccctgcaacctccgcctcccgggttcaagccattctcctgcctcagcctccc-aatagctgagattacaggcacccgccaccatgcccggctaa-ttttttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggataacaggcatgagc
i panTro5.chrX                 C 0 T 18636
s panPan2.chrUn_NW_014024190v1  30676 367 -    177848 AGCAGAGCTCAGGT-GCTGTTAACGTTTCCTGGGACACCGATGGGCTTGGAGAGCCTCACTGTGCACACATGTGGCCTG-----ttttatttttatttttattttttcagatggagtctcactctgtcgcccaggctggagtgcaatggcgcgatctcagctccctgcaacctccgcctcccgggttcaagccattctcctgcctcagcctccc-aatagctgagattacaggcacccgccaccatgcccggctaa-ttttttgtatttttagtagagac-ggggtttcaccatgttggtcaggctggtctcgaactcctgacctcat--gatccgcccgcctcggcctcccaaagtgctgggatgacaggtgtgaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       182889 370 +    417917 AGCAGAGCTCAGG--GCTGTT-ACGTTTCCTGGGACACCGATGGGCTTGGAGAGCCTCACTGTGCACACGTGTGGCCTGttttttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctccctgcaacctccacctcccgggttcacgcca-tctcctgcctcagcctcctgagtagctg-gactacaggcacctgccaccacgcccggctaatttttttgtatttttagtagagacgggggtttcaccatg-tggccaggatggtctcgaactcctgacctcgt--gatccgcccgcctcggcctcccaaagtgcggggatgacaggcgtgaga
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181040  58 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=13476.000000
s hg38.chrX_KI270880v1_alt     121979 23 +    284869 caccgcgcccggcTATGTGGCCT
s panTro5.chrX                 251671 23 + 155549662 caccgcgcccggcTATGTGGCCT
i panTro5.chrX                 T 18636 C 0
s panPan2.chrUn_NW_014024190v1  31043 23 -    177848 caccgcgcccggcTATGTGGCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       183259 23 +    417917 caccgcgcccggcTATGTGGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181040 58 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=174897.000000
s hg38.chrX_KI270880v1_alt     122002 294 +    284869 GTTTGCTGGGACGGAGCCGCTGGCATCCTGGCGGCAGCTTCA-AAACACAGTCACAGTCTCAGGGGAGC-AAAAGCACCCGGTCCCCATCACTGTCCCCAAGA-------AAGGGAGCAGCAGGGGGTTCCCGCGGCTGGCCAGGAAGCTGGGGACAAACGGTGG-----CGTACCTGAGCACCTGCATTCCCGCAGTG-AAGGACAGGTCGACACGGGCAGCTTTGCTTCTCTCCTGGCCAGCTCGGTCAAGCTTCCTGCCTCTGGTGCCTGGAATGCAGAGTCCTGGGTGCGCAACAGGCATTGCCT
s panTro5.chrX                 251694 294 + 155549662 GTTTGCTGGGACGGAACCGCTGGCATCCTGGCGGCAGCTTCA-AAATACAGTCACAGTCTCAGGGGAGC-AAAAGCACCCGGTCCCCATCACTGTCCCCAAGA-------AAGGGAGCAGCAGGGGGTTCCCGCGGCTGGCCAGGAAGCTGGGGACAAACGGTGG-----CGTACCTGAGCACCTGCATTCCCGCAGTG-ACGGACAGGTCGACACGGGCAGCTTTGCTTCTCCCCTGGCCAGCTCGGTCAAGCTTCCTGCCTCTGGTGCCTGGAATGCAGAGTCCTGGGTGTGCAACAGGCATTGCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  31066 294 -    177848 GTTTGCTGGGACGGAGCCGCTGGCATCCTGGCAGCAGCTTCA-AAACACAGTTACCGTCTCAGGGGAGC-AAAAGCACCCGGTCCCCATCACTGTCCCCAAGA-------AAGGGAGCAGCAGGGGGTTCCCGCGGCTGGCCAGGAAGCTGGGGACAAACAGTGG-----CGTACCTGAGCACCTGCATTCCCGCAGTG-ACGGACAGGTCGACACGGGCAGCTTTGCTTCTCCCCTGGCCAGCTCGGTCAAGCTTCCTGCCTCTGGTGCCTGGAATGCAGAGTCCTGGGTGTGCAACAGGCATTGCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       183282 293 +    417917 GTTTGCT-GGACGGAGCCGCTGGCATCCTGGCGGCAGCTTCA-AAATACAGTCACAGTCTCAGGGGAGCAAAAAGCACCCGGTCCCCATCACTGTTCCCCAGA-------AAGGGAGCAGCAGGGGGTTCCCGCGGCT-GCCAGGAAAGCTGGGACAAAAGGTGG-----CGTACCTGAGCACCTGCATTCCCGCAGTG-ACGGACAGGTCGACACGGGCAGCTTTGCTTCTTCCCTGGCCAGCTTGGTCAAGCTTCCTGCCTCTGGTGCCTGGAATGCAGAGTCCTGGGTATGCAACAGGCATTGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             181098 286 +  11138919 GTTTGCCTGGATGGAGCTGC------CCCATCACCA--TTCAGAGATACAGGTGCCATCTTGGGGCTGT--GGTGCACCTGGTCCAGGTAGCTACTCAGAGCAGAGGCAGAAGGAAGAGGCAGGGGATGCCTGAAGCTGCATATTCTGCTGG----AAAAGGTGGAAGGCCCTACCCTAAC-CCTAAA---CCCCAGTGCCCAGAGAAGTCAGCCTGGGCAGGTTTGCTTCTGCCCTGGACAGCTCCGTCCAGATTCTGGCTGCT-GCCCTGGGAGTGCACAGTTCTGTGTGCG----AGGCTCTGTGT
i otoGar3.GL873584             I 58 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=33213.000000
s hg38.chrX_KI270880v1_alt     122296 71 +    284869 GGGTGGGCTGGCGtttttgattt-gttttgtttttttgagacagagtctcactctgttgcccaggctggagt
s panTro5.chrX                 251988 71 + 155549662 GGGTGGGCTGGCGtttttgtttt-gttttgtttttttgagacagagtctcactctgttgcccaggctggagt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  31360 68 -    177848 GGG-GGGCTGGTGtttt--gttt-ggtttggttttttgagacagagtctcactctgttgcccaggctggagt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       183575 72 +    417917 GGGTGGGCTGGCGtttttgttttggttttgtttttttgagacagagtctcactctgttgcccaggctggagt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181384  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       232715 4330 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=177189.000000
s hg38.chrX_KI270880v1_alt     122367 219 +    284869 gcagtggcgtgatctcagctcactgcaacctccgcctcctggatccaagtcattctcctgcctcagcctcccgaatagctgggattacaagcacctgccaccgcaccgggctaa-ttttgtatttgtagtagagacggggtttcaccgtgttggccaggctggtctcgaactcctgacctcaggtgatcca-cccacctcggcctcccaaagtgctgggaG
s panTro5.chrX                 252059 216 + 155549662 gcaatggcgtgatctcagctcactgcaacctccgcctcctggatccacgtcattctcctgcctcagcctccggaatagctgggattacaagcacctgccaccacgccgggctaa-ttttgtatttttagtagagacggggtttcaccgtgttggccaggctggtctcaaactcctgac---aggtgatccg-cccgcctcggcctcccaaagtgctgggaG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  31428 216 -    177848 gcaatggcgtgatctcagctcactgcaacctccgcctcctggatccacgtcattctcctgcctcagcctccggaatagctgggattacaagcacctgccaccacgccgggctaa-ttttgtatttttagtagagacgggctttcaccgtgttggccaggctggtctcaaactcctgac---aggtgatccg-cccgcctcggcctcccaaagtgctgggaG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       183647 221 +    417917 gcaatggcgtgatctcagctcactgcaacctccgcctcctggatccatgtcattctcctgcctcagcctccggaatagctgggattacaagcacctgccaccacgccgggctaatttttgtatttttagtagagacggggtttcaccgtgttggccaggctggtctcgaactcctgacctcaggtgatccaccccgcctcggcctcccaaagtgctgggaG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       237045 217 +   1230721 gcagtggcacgatctcggctcactgcaacctccgcctcccgggatcaagtaattctcctgcctcagcctcctgagtagctgggatgacaagcacctgccactgcacctggctaa-ttttgtatttttagtagagatggggcttcaccatgttggtcaggctggtctcgaactcctgaccccggg-gaaccg-cccgcctcggcctcccaaagtgct-ggAT
i colAng1.NW_012115411v1       I 4330 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181384   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=48409.000000
s hg38.chrX_KI270880v1_alt     122586 52 +    284869 GGTTGGTGTTTTTATGACCTTCACACAGACCCCAGAGCTGGTGTTGGAGGAG
s panTro5.chrX                 252275 52 + 155549662 GGTTGGTGTTTTTAGGAGCTTCACACACACTCCAGAGCTGGTGTTGGAGGAG
i panTro5.chrX                 C 0 I 17989
s panPan2.chrUn_NW_014024190v1  31644 52 -    177848 GGTTGGTGTTTTTAGGAGCTTCACACACACTCCAGAGCTGGTGTTGGAGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       183868 52 +    417917 GGTTGGTGTTTTTAGGAGCTTCACACACACTCCAGAGCTGGTGTTGGAGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       237262 41 +   1230721 GGTTGGCGTTGTGATGAGCTTCACACAGACTCCAGAGCTGG-----------
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             181384 47 +  11138919 GGTTGGCGTTTTTATGGTCCCCACACAAATTCCAGAGCTGA-----GGGGAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=222761.000000
s hg38.chrX_KI270880v1_alt     122638 333 +    284869 GGTGCA-GAGACCCCAGGAGGTACCCTGGAAA-GGAGCCCAATAGGAAGACCCAGGACTCTA--GGGCAGCAGGTTCAAGCCTGCTCAGCTGGGAAGACCGTTTCCTTCAGGAGTGTGGCGGGTTCCACACGGCGGG---TTGGAGACATGCACCTGCCCAGGCTGGGCCACTCAGGGTTCACGCCGGGGCACTGAGTATTTT-GGGGGTGCAATGAACTCTGCACAACGCACCAGGGTGGGGGCAGAGATGAATCAAAGAAGACAGCTG-TTTGTGTGTGAGCTTCCCTGGCCTGTGcacacagagacagacatacacacccacacacacacaggcacaca
s panTro5.chrX                 270316 302 + 155549662 GTTGCA-GAGACCCCAGGAGGTACCCTGGAAA-GGAGCCCAATAGGAAGACCCAGGACTCTA--GGGCAGCAGGTTCAAGCCTGCTTAGCTGGGAAGACCGTTTCCTTCAGGAGTGTGGCGGGTTCCACACGGCGGG---TTGGAGACATGCACCTGCCCAGGCTGGGCCACTCAGGGTTCACGCCGGGGCACTGAGTATTTT-GGGGGTGCAATGAACTCTGCACAACGCACCAGGGTGGGGGCAGAGATGAATCAAAGAAGACAGCTG-TTTGTGTGTGAGCTTCCCTGGCCTGGGcacacagagacag-------------------------------
i panTro5.chrX                 I 17989 C 0
s panPan2.chrUn_NW_014024190v1  31696 332 -    177848 GGTGCA-GAGACCCCAGGAGGTACCCTGGAAT-GGAGCCCAATAGGAAGACCCAGGACTCTA--GGGCAGCAGGTTCAAGCCTGCTCAGCTGGGAAGACCGTTTCCTTCAGGAGTGTGGCGGGTTCCACAAGGC-GG---TTGGAGACATGCACCTTCCCAGGCTGGGCCACTCAGGGTTCACGCCGGGGCACTGAGTATTTT-GGGGGTGCAATGAACTCTGCACAACGCACCAGGGTGGGGGCGGAGATGAATCAAAGAAGACAGCTG-TTCGTGTGTGAGCTTCCCTGGCCTGTacacacagagacagacatacacacccacacacacacatgcataca
i panPan2.chrUn_NW_014024190v1 C 0 I 90
s gorGor5.CYUI01015925v1       183920 333 +    417917 GGTGCA-GAGACCCCAGGAGGTACCCTGGAATGGGAGCCCAATAGGAAGAGCCCAGGATCTA--GGGCAGCAGGTTCAAGCCTGCTCAGCTGGGAAGACCGTTTCCTTCAGGAGTGTGGCGGGTTCCACAAGGCGGG---TTGGAGACATGCACCTGCCCAGGCTGGGCCACTCA-GGTTCACGCCGGGGCACTGAGTATTTTGGGGGGTGCAATGAACTCTGCACAACGCACCAGGGTGGGGGCGGAGATGAATC-AAGAAGACAGCTG-TTTGTGTGTGAGCTTCCCTGGCCTGTGcacacagagacagacatacacacccacacacacacattcataca
i gorGor5.CYUI01015925v1       C 0 I 28
s colAng1.NW_012115411v1       237303 334 +   1230721 GGGGCA-GAGACCCCGGGAGGTACCTGGGCAT-GGAGCCGAATAGGAAGACCCAGGCCTGTA--GGGCAGAAGGTTCAAGCCTGCCCCGCTGGGAAGATCGTTTCCTTCAGGAGTGTGGCGGGTTCCACACGGTGGGTTTTTGGGGACACGCAGCTGCCCAGGCTGGGCCCCTCAGGGTTCACGTC-GGGCACTGAGTCTTTT--GGGGTGCGATGAACTCTGCACAAGGCACCAGGGTGGGGGCACGAATGAATC-AAGAGAACTGTTTCTTTGAGTGTGAGCTTCCCTGGCCTGTGCACATGGAGACAGACATAGACTCCTGcacacacacaggtgcaca
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             181431 164 +  11138919 ----CATTTGGCCCTAGAGAGAAACGTG-----GAGGTCCA-----GATCTCCTGGCTCCTGGTGGAGAGCAGGGTCCAGCCTGTCTGTCTGGGATGACCA----------------GACAGTTTGCACAA----CG--------Aacatacacataccc------------------------------------------------------caaactc------------------------------------------acacccg-t-----------------------------acgtcgacatatgtacacaccccaacactca----------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=573.000000
s hg38.chrX_KI270880v1_alt     122971 2 +    284869 ga
s gorGor5.CYUI01015925v1       184281 2 +    417917 ga
i gorGor5.CYUI01015925v1       I 28 C 0
s colAng1.NW_012115411v1       237637 2 +   1230721 ga
i colAng1.NW_012115411v1       C 0 I 542
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181595 0 +  11138919 C
e panTro5.chrX                 270618 0 + 155549662 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  32028 90 -    177848 I

a score=20557.000000
s hg38.chrX_KI270880v1_alt     122973 107 +    284869 tgcctgtacacatacattcacacccagacacacatatgcattcgtacgcacctaca----------cacacatctgt---acacacacattcaca---ccaacacacagacatacattcat------------ac
s panTro5.chrX                 270618 104 + 155549662 -------------acattcacacccacacacacatatgcattcgtacgcacctaca----------cacacatctgt---acacacac--tcaca---cccccccccacacatacattcatacacacccatacac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       184283 106 +    417917 cgcctgtacacatacattcacacccacacacacatatgcattcatactca-ctaca----------cacacatctgt---acacacacattcaca---cccacacacagacatacattcat------------ac
i gorGor5.CYUI01015925v1       C 0 I 217
s otoGar3.GL873584             181595 104 +  11138919 --cctgcacacacacataaacacacaaacgcaca---------GTTCACACCTGAAGCCTCAGGTTCACACATGAGTATAACACACATGTTCACATGTCTCCAATTCACACCTAC--------------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  32028  90 -    177848 I

a score=8563.000000
s hg38.chrX_KI270880v1_alt     123080 62 +    284869 acacctgcacacacacacacgtac--acacactcctatacacatacattcacacccacacacag
s panTro5.chrX                 270722 64 + 155549662 acacctgcacacacacacaggtacatacacacgcctgtacacatacattcacagccacacacag
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             181699 50 +  11138919 ACACCTGTGCACACCCACATCCAC--------------ACCCATATCTGCACACCCACCCACAG
i otoGar3.GL873584             C 0 I 670
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I
e panPan2.chrUn_NW_014024190v1  32028 90 -    177848 I

a score=6462.000000
s hg38.chrX_KI270880v1_alt     123142 78 +    284869 acat----acgcacccacacacacattcatacacacctgcaccacacacaggcgcacacactcctgtacacacacattcaca
s panTro5.chrX                 270786 82 + 155549662 acatgtacacacacacacacacacattcatacacacctgcaccacacacaggcgcacacactcctgtacacatacattcaca
i panTro5.chrX                 C 0 I 183
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I
e panPan2.chrUn_NW_014024190v1  32028 90 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     123220 489 +    284869 accccacacgtacacaccaggacacacacattcatatacacctgaacacaggtgcacacacacgcctgtacacatccattcacacccacacacagacatacacacctgtacacacacattcatacacgcacacacacacgggtacacacgcctgtacacgttcacacccacagacatatacacagacacacctgcacacacacacacagaggcacatgcacacacacacctgtacacatacattcacatgcacacacagacacagccccccacacacacaggtgcacacacacgcctgtacacatacattcacacctacacacagacacacacctgtacacacacattcatacacacatgcacacacacacgggtacacacgcctgtacacgttcacacccacagacatatacagacacacctgcacacacacacacagaggcacatgcacacacacacctgtacacatacattcacatgcacacacag
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I
e panPan2.chrUn_NW_014024190v1  32028  90 -    177848 I

a score=6187.000000
s hg38.chrX_KI270880v1_alt     123709 90 +    284869 acacaccccccacacacaggtgcacacacatgcctgtacacatacattcacacctacacacagacatacacacctgtacacacacacaca
s panPan2.chrUn_NW_014024190v1  32118 86 -    177848 acacaccgcacacacacaggtgcacacacacacctgtacacatacattcacacc----cacaaacatacacagcgatatacacacacaca
i panPan2.chrUn_NW_014024190v1 I 90 I 30
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     123799 27 +    284869 cagacacaccccccccacacaggtgca
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I
e panPan2.chrUn_NW_014024190v1  32204 30 -    177848 I

a score=389.000000
s hg38.chrX_KI270880v1_alt     123826 8 +    284869 catacacg
s panPan2.chrUn_NW_014024190v1  32234 8 -    177848 cacgcaca
i panPan2.chrUn_NW_014024190v1 I 30 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184389 217 +    417917 I

a score=69751.000000
s hg38.chrX_KI270880v1_alt     123834 306 +    284869 cctgtacacatacattcacacctacacacagacatacacatctgtacacacacacattcatacacacacagatacacacccacgcacacacaggtgcacacacacgcttgtacacatacattcacacccacacacagacatatacacacagacattcatacacacctgcacagacacacacatacacaggcccatgcacgcaca-cctgtacacacacac----acccacacacagacatacacaTCTGCGTGGCAAACATTGACCCCTTCCTCAGgctgctgctgctgctgcAAATGTTA-CTCAGCGATC
s panPan2.chrUn_NW_014024190v1  32242 305 -    177848 cctgtacacatacactcacacccacacacagacatacacatctgcatg-gcaaacattcatacacacacagatacacagccgcacacacacaggtgcacacacacacctgtacacacac--tcgcacccacacacagacatatacacacagacattcatacacacctgcacagacacacacatacacagtctcacgcatgcacg-cctgtacacacacactcacacccacacacagacatacacaTCTGTGTGGCAAACATTGACCCCTTCCTCAGgctgctgctgctgctgcAAATGTTA-CTCAGCGA--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       184606 306 +    417917 cctgtacacatacactcacacc-acacacagacatacacatctgtatg-gcaaacattcatacacacacagatacacag-cgcacacacacaggtgcacacacacacctgtacacacac--tcgcacccaca-acagacatatacacacagacattcatacacacctgcacagacacacacatacacagtctcacgcacgcacaccctgtacacaccaactcacacccacacacagacatacacaTCTGTGTGGCAAACATTGACCCCTTCCTCAGGCTGCTGCTGCTGCTCAGAAATTTATCTCAGCGACC
i gorGor5.CYUI01015925v1       I 217 I 74
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     124140 33 +    284869 GTCCAGCCCAGGCTGCAGGCCGACCCTGAGGGC
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e panTro5.chrX                 270868 183 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184912 74 +    417917 I
e panPan2.chrUn_NW_014024190v1  32547  0 -    177848 C

a score=12378.000000
s hg38.chrX_KI270880v1_alt     124173 45 +    284869 CCTGGAGGCCTCATAAACCACACGTCCGGCCTCGGCTGATTCCAC
s panTro5.chrX                 271051 45 + 155549662 CCTGGAGGCCTCATAAACCACGAGTCCGGCCTCGGCTGATTCCAC
i panTro5.chrX                 I 183 C 0
s panPan2.chrUn_NW_014024190v1  32547 45 -    177848 CCTGGAGGCCTCATAAACCACGCGTCCGGCCTCGGCTGATTCCAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       184912 74 +    417917 I

a score=4561.000000
s hg38.chrX_KI270880v1_alt     124218 11 +    284869 AAGGCTCCGTG-
s panTro5.chrX                 271096 11 + 155549662 AAGGCTCCGTG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32592 11 -    177848 AAGGCTTCGTG-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       184986 12 +    417917 AAGGCTTCGTGC
i gorGor5.CYUI01015925v1       I 74 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e otoGar3.GL873584             181749 670 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=9010.000000
s hg38.chrX_KI270880v1_alt     124229 12 +    284869 GAGCTA-CCTGTG
s panTro5.chrX                 271107 12 + 155549662 GAGCTA-CCTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32603 12 -    177848 GAGCTA-CCTGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       184998 13 +    417917 GAGCTACCCTGTG
i gorGor5.CYUI01015925v1       C 0 I 19
s otoGar3.GL873584             182419 12 +  11138919 GAGCGA-CCTGTG
i otoGar3.GL873584             I 670 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=5928.000000
s hg38.chrX_KI270880v1_alt     124241 18 +    284869 CAGGGGGGAGAGGCGTGA
s panTro5.chrX                 271119 18 + 155549662 CAGGGGGGAGAGGCGTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32615 18 -    177848 CAGGGGGGAGAGGCGTGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             182431 17 +  11138919 -AAGCCAGAGACTCATGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       185011 19 +    417917 I

a score=83048.000000
s hg38.chrX_KI270880v1_alt     124259 178 +    284869 GGCTCAAAGGG-------GCCCTGGACGCAGGGACAGACGTTTCTTTACAGACACCCACGTGAGGCAGACAAACCACACATATGTCTC--CAACCAC-ACATGGTAATTCGTGAG-GATGAAGAGATGAAGG-CCCCAGGCCATATTCCCTTTGTGCTGTCCTGGTC-TAGCG-TGAAATG--TTAAT-TTTTGC
s panTro5.chrX                 271137 180 + 155549662 GGCTCAAAGGG-------GCCCTGGACGCAGGGACAGATGTTTCTTTACAGACACCCACGTGAGGTAGACAAACCACACATATGTCTCTCCAACCAC-ACATGGTAATTCGTGAG-GATGAAGAGATGAATG-CCCCAGGCCATATTCCCTTTGTGCTGTCCTGGTC-TAGCG-TGAAATG--TTAAT-TTTTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32633 178 -    177848 GGCTCAAAGGG-------GCCCTGGACGCAGGGACAGACGTTTCTTTACAGACACCCACGTGAGGTAGACAAACCACACATATGTCTC--CAACCAC-ACATGGTAATTCGTGAG-GATGAAGAGATGAATG-CCCCAGGCCGTATTCCCTTTGTGCTGTCCTGGTC-TAGCG-TGAAATG--TTAAT-TTTTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       185030 178 +    417917 GACTCAAAGGG-------GCCCTGG-CGCAGAGGACAACGTTCTCTTACAGACACCCACGT-ATGTAGATCAACCACACAT-TGTCTC----AACAC-AC-TGGTAATTCTCGAGTGATGAAGAGGTGAATGCCCCCAGGCCATATTGCCGTTTGCTTGTCCTGGTC-TAGCGTTGAAATGGCTTAATATTTTGC
i gorGor5.CYUI01015925v1       I 19 C 0
s otoGar3.GL873584             182448 164 +  11138919 AGTCCAAACGGCCCAGAAGCCCTGG-TGCTG-GACCCATGTTT----------------GTGATGGGCACAAACCACACATACGTTTC------CGCAACAGGGTTATTCCTGCA-GATGGAGAGA-GAGCA-CTACAGGGCAAATTCCCTTTGGCCTTCCCAGATCTTAGCA-CAGAATT--TTAAT-TTCTGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             176871 1839 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=111186.000000
s hg38.chrX_KI270880v1_alt     124437 147 +    284869 C-TTTTTTCGTGTACAAAGGGGCCCTTAGGTTGTTAGATGTTCCTGCTTTCATAGTAGACGCATGTGGACTTTTCGTGGTATTTTGTT-GTGTTTCTACTGCTTGTTGGAGGCAGAAA-AAGCGACTCGTCAATG-TTTTATAATGAAA-AT
s panTro5.chrX                 271317 147 + 155549662 C-TTTTTTCGTGTATAAAGGGGCCCTTAGGTTGTTAGATGTTCCTGCTTTCATAGTAGACGCATGTGGACTTTTCGTGGTATTTTGTT-GTGTTTCTACTGCTTGTTGGAGGCAGAAA-AAGCGACTCGTCAATG-TTTTATGATGAAG-AT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32811 147 -    177848 C-TTTTTTCGTGTATAAAGGGGCCCTTAGGTTGTTAGATGTTCCTGCTTTCATAGTAGATGCATGTGGACTTTTGGTGATATTTTGTT-GTGTTTCTACTGCTTGTTGGAGGCAGAAA-AAGCGACTCGTCAATG-TTTTATGATGAAA-AT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       185208 150 +    417917 CTTTTTTTCGTGTCTAAAGGGCCCTTAGAATTGTTAGATGTTCCTGCTTTCATAGTAT-CGCATGTGGACTTTTGGTGATACTTTGTTGGTGTTTCTACTGCTTGTTGGAGGCAGAAA-AAGCGACTCGTCAGTGTTTTTATGATGAAATAT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             178710 145 +    465904 C-CTTTTCCCTGTGCAGGAGG--CCCTGGGTGGTCAGACATTCCTGCTTTTGTCGTCCACGCCTGCCCATGTTTTGTGATGGTTCCTT-GTTTTTCTGCTGCCTGTCTGAGGCAGACA-AACCTGTTCGTCAATG-TTTCATGATGAAA-AT
i saiBol1.JH378345             I 1839 C 0
s otoGar3.GL873584             182612 141 +  11138919 ---GTTTTTCTGTATGAAACG-CCCCTAGATTGTTAGGGTTTTGTGTTTTTATAGTGGA--CATGTGAATCTTTTGTAATATCTTGTT-GTTTTTCTGCCACCTGT--GAGGCAAAACTAACCTACTAATTAATT-TCTTATGACAAAC-AT
i otoGar3.GL873584             C 0 I 5034
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=55720.000000
s hg38.chrX_KI270880v1_alt     124584 103 +    284869 G-AAAAG---TATGAAAGGTGAGTGT------------GAAGTTGTAACAGACATACTTTTGTGAATTTTGGTGA-------TTTTTTTTGTTTGTT-GGTTTCAGTCTTTG-------GAAAAAATCTGTGGT
s panTro5.chrX                 271464 102 + 155549662 G-AAAAG---TATGAAAGGTGAGCGT------------GAAGTCGTAAC-GACATACTTTTGTGAATTTTGGTGA-------TTATTTTTGTTTGTT-GGTTTCAGTCTTTG-------GAAAAAACCTGTGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  32958 115 -    177848 G-AAAAG---TATGAAAGGTGAGCATTTGGAAAGACGGGAAGTCGTAACAGACATACTTTTGTGAATTTTGGTGA-------TTTTTTTTGTTTGTT-GGTTTCAGTCTTTG-------GAAAAAACCTGTGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       185358 114 +    417917 GAAAAAG---TGTGAAAGGTGAGCGTTTGGAAAGACGGGAAGT-GTAACAGACAT-CTTTTTTGAATTTTGGTGA-------TT-TTTTTGTTTGTTGGGTTTCAGTCTTTG-------GAAAAAACCTGTGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             178855 132 +    465904 A-AAAAGAAATACGGACGGTGAGGGTTTGCAGAGACGGGGGGTCGGCACGGAAAGACTTTTGTGAATCTTGCTGGGTTGTTTTTTTTTTTTTTGGTT-GTTTTTTGTTTCTGCGTTTGTAAAAAAATTCGCGGT
i saiBol1.JH378345             C 0 I 25
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=22716.000000
s hg38.chrX_KI270880v1_alt     124687 52 +    284869 Tgg-ccgggcgcggtggctcacgcctg-gcatcccagc-actttgggaggccgag
s panTro5.chrX                 271566 52 + 155549662 Tgg-ccgggcgcggtggctcacgcctg-tcatcccagc-actttgggaggccgag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  33073 52 -    177848 Tgg-ccgggcgcggtggctcacgcctg-tcatcccagc-actttgggaggccgag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       185472 55 +    417917 TGGCccgggctcgggtgctcacgcctgttcatcccagcaacttggggaggcggag
i gorGor5.CYUI01015925v1       C 0 I 19
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             178987 25 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=4570.000000
s hg38.chrX_KI270880v1_alt     124739 20 +    284869 gtgagtggatcatgaggtca
s panTro5.chrX                 271618 20 + 155549662 gtgagtggatcatgaggtca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  33125 20 -    177848 gcgggcggatcaagaggtca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             178987 25 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       185527 19 +    417917 I

a score=29543.000000
s hg38.chrX_KI270880v1_alt     124759 62 +    284869 ggagatcgagaccatcttggccaacgtggtaaaactccatctct-actaagaatacaaaaaat
s panTro5.chrX                 271638 62 + 155549662 ggagatcgagaccagcctggccaacgtggtaaaactccatctct-actaaaaatacaaaaaat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  33145 62 -    177848 ggagatcgagaccatcttggccaacatggtaaaactccgtctct-actaaaaatacaaaaaat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       185546 62 +    417917 ggagatc-agaccatcttggccaacatggtaaaactccgtctctaaccaaaaatacaaaaaat
i gorGor5.CYUI01015925v1       I 19 I 223
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             178987 25 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=20378.000000
s hg38.chrX_KI270880v1_alt     124821 79 +    284869 tagcggggtatggtggcgggcacctgtagtcccacctacttgggaggctgaggcaggagaatcgcttgaacctgggagg
s panTro5.chrX                 271700 79 + 155549662 gagccgggcgtggtggcgggcgcctgtagtcccagttactcgggaggctgaggcaggagaatcgcttgaacctgggagg
i panTro5.chrX                 C 0 I 135
s panPan2.chrUn_NW_014024190v1  33207 79 -    177848 tagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggagg
i panPan2.chrUn_NW_014024190v1 C 0 I 135
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             178987 25 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       185608 223 +    417917 I

a score=115807.000000
s hg38.chrX_KI270880v1_alt     124900 169 +    284869 tggagcCT-CCCCAGATGCACGGCTGTGTCCCAGTCCAGGTTCCAAAGGGGCTTTGTGGATCTTTTTCTGCAGACCGAAtgaatgcttt--gtcctgcc-aagtcctacgttgaaaccctgaaccccaaggtcagagtgttact-agtggggggtctt-tgggagg-tgaggaggt
s panTro5.chrX                 271914 169 + 155549662 TGGAGCCT-CCCCAGATGCACGGCTGTGTCCCGGTCCAGGTTCCAAAGGGGCTTTGTGGATCTTTTTCTGCAGACAGAAtgaatgcttt--gtgctgcc-aagtcctacgttgaaaccctcaaccccaaggtcagcgtgttact-agtggggggtctt-tgggagg-tgaggaggt
i panTro5.chrX                 I 135 C 0
s panPan2.chrUn_NW_014024190v1  33421 169 -    177848 TGGAGCCT-CCCCAGATGCACGGCTGTGTCCCAGTCCAGGTTCCAAAGGGGCTTTGTGGATCTTTTTCTGCAGACAgaatgaatgcttt--gtcctgcc-aagtcctacgttgaaaccctgaaccccaaggtcagagtgttact-agtggggggtctt-tgggagg-tgaggaggt
i panPan2.chrUn_NW_014024190v1 I 135 C 0
s gorGor5.CYUI01015925v1       185831 176 +    417917 TGGAGCCTCCCCCAGATGCACGGCGTTGTCCCAGTCCAGGTTTCCAAAGGGGCTTGTGGATCTTTTTCTGCAGACAgaatgaatgcttttggtcctgcctaagtcctacgttgaaaccctgaaccccaaggtcagagtgttactcattggggggtcttgtgggaggttgaggaggt
i gorGor5.CYUI01015925v1       I 223 C 0
s saiBol1.JH378345             179012 167 +    465904 TGCAGCCT-CCCTGGACCCGGGGCTGTGTCCCAGGGAAGGTTCCAGAAGGGCTGGATTGATCTTTTTCTGCAGACTCCAtgaatgctgt--gtccagtc-aagtcctacgttgaaa-cctgacctccaaggtcacggtcttac--aacgtgggatctt-tcggagg-tgaggaggt
i saiBol1.JH378345             I 25 I 6740
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=100406.000000
s hg38.chrX_KI270880v1_alt     125069 235 +    284869 cgtgatggtagagtctc-acgaatgggattagtatccccataaaagggacaccagagcttcctctctctctgtctctctctctgtctctttctctccaccccgcac-catggaatgacacagcaagaagg-ttgccgtctgcaagccaggaagggagt-cctcaccaggagctgagatgttgctactttga-tcttgga-cctccag-tcttcatgtgtgtgagaaatcaatgtctgttgtt
s panTro5.chrX                 272083 235 + 155549662 cgtgatggtagagtctc-acgaatgggattagtatccccatgaaagggacaccagagcttcctctctctctgtctctctctctgtctcttcctctccaccccacat-catggaatgacatagcaagaagg-ttgccgtctgcaagccaggaagggagt-cctcaccaggagctgagatgttgctgctttga-tcttgga-cctccag-tcttcatgtgtgtgagaaatcaatgtctgttgtt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  33590 240 -    177848 cgtgatggtagagtctc-atgaatgggattagtatccccataaaagggacaccagagcttcctctctctctctctctctctctgtctctttctcttgactccccccacatagaatgacacagcaagaagg-ttgccgtctgcaagccagaaagggagtccctcaccaggagctgagatgttgccactttgattcttggaccctccagttcttcatgtgtgtgagaaatcaatgtctgttgtt
i panPan2.chrUn_NW_014024190v1 C 0 I 23
s gorGor5.CYUI01015925v1       186007 227 +    417917 cgtgatggtagagtctctatgaatgggattagtatacccgtaaa---ggcacc--agcttcctctctctctctctctct-tctgtctctttctctcgatccc-cac-catagaatgacacagcaagaaggtttgccgtctgcaagccaggaagggagt-cctca-caggagtgaagatgtgccacttttga-tcttgga--ctccag-tcttcatgtgtgtgagaaatcaatgt-tgttgtt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=96343.000000
s hg38.chrX_KI270880v1_alt     125304 478 +    284869 taagccctgtggtttgtggtactttgctgtagAttttctttctttctttctttcttt------------------------------------------------ttgagactga-gtctcactctgtcgcccaggctggagtgcagtggtgtgatcttggctcactgcaacctctgccttctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacacctggctgatttttatatttttagtagagacggggtttcaccatgttggccaggatggtctcaatctcctgacctcgtgatccacccg-cgtcaacctgcccaagtgctgggattataggcatgagccacc-gtgcccggcAATtctatctatctgt------ctgtctgtctgtctgtctgtc------tgtttgtctgtctatctatctatctgtc----------------------------------------------------------tatccatccatccatctaatccatccatccatctatcatctatctatccatctatctTTTGGGTTTTTTTTGAGA
s panTro5.chrX                 272318 584 + 155549662 taagccctgtggtctgtggtactttgctgtagATtttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttgagactga-gtctcactctgtcacccaggctggagtgcagcggcacgatcttggctcactgcaacctctgccttctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggtgtccaccaccacacccggctgatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatctgcctg-cctcggcctgcccaagtgctgggattataggcgtgagccacc-gcgcccagcAATtctatctatctgt------ctgtctgtctgtctgtctgtc------tgtctatctatctatctatctatctatcatctattatctatctatctatctatctatctatctatctatctatctctctatctctctatccatccatccatctaatccatccatccatctatcatctatctatccatctatctTTTGGGTTTTTTTTGAGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       186234 506 +    417917 taagccc-gtggtttgtggtactttgctgtagATTT--CTTTTTTCtttctttcttt-------------------------------tcttttctttttttcttttgagactgaggtctcactctgtcgcccagg-tggagtgcagtggtgcgatcttgg-tcactgcaa-ctctg-cttctgggttcaagtgattctccc-tctcag-ctcctgagtagctgggactacagg-acctgccaccacaccggctcgattttt-ta-ctttagtagagacggggtttcaccatgttggccaggatggtcttgatctcttgaccttgtgatctgcctgccctcggcctgccc-agtgct-ggattataggcgtgagccaccggcgcccggcAATtctgtctgtctgttgtctgttgtctgtctgtctgtctgtctCTTATtatctatctatctatctatctatctatcttcttctatca-----------------------------------------------tatccatcataccatctaatccatccatccatctatcatctatctatccatctatctTTTGGG-TTTTTTTGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             182753 5034 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  33830  23 -    177848 I

a score=18598.000000
s hg38.chrX_KI270880v1_alt     125782 47 +    284869 CAGAGGAGCTGAAACATAGTGAGAGG-TTTCTATACCCAGAGAGCTCA
s panTro5.chrX                 272902 47 + 155549662 CAGAGGAGCTGAAACATAGTGAGAGG-TTTCTATACCCAGAGAGCTCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       186740 45 +    417917 CAGAGGA-CTGAAACATAGTGAGAGG--TTCTGTACCCAGAGAGCTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             187787 48 +  11138919 CAAGGGAGCTGAAACATGTTGAGAGGTTTCCTAAACCCAAAGACCTCA
i otoGar3.GL873584             I 5034 I 27
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  33830 23 -    177848 I

a score=20840.000000
s hg38.chrX_KI270880v1_alt     125829 82 +    284869 ACCTCTA-GGGTGGA-GAAGTTTAAACATTCACTAAACTGGCTTTCATTTAGTAATTGGTGCAGAGCAAAGAGAGACATTtgtg
s panTro5.chrX                 272949 82 + 155549662 ACCTCTA-GGGTGGA-GAAGTTTAAACATTCACTAAACTGGCTTTCATTTAGTAATTGGTGCAGAACAAAGAGAGACATTtgtg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       186785 84 +    417917 ACCTCTAGGGGTGGACGAAGTTTAAACATTCACTAAACTGGCTTTCATTTAGTAATTGGTGCAGAGAAAAGAGAGACATTTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835 27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       237639 542 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  33830 23 -    177848 I

a score=59824.000000
s hg38.chrX_KI270880v1_alt     125911 154 +    284869 tatgtgtgtgtgtgtgtTTTCACATCACAATAT--ATCATTCTCTTCTCTTCATTTTGTCTCATTTTTCAGAAG-CAACAAAAAGGAGAAGATAAGTTTA-TTTCCATGCAGAGAAGGGAGAGTTTGCTTTCCAttttattttattttatt-----------tttcaga--
s panTro5.chrX                 273031 133 + 155549662 tatgtgtgtgtgtgt-----------------------ATTCTCTTCTCTTCATTTTGTCTCATTTTTCAGAAG-CAACAAAAAGGAGAAGATAAGTTTA-TTTCCATGCAGAGAAGGAAGAGTTTGCTTTCCAttttattttattttatt-----------tttcaga--
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       186869 158 +    417917 TATTTGTGTGTGTGTGTTTTCACATCACAATATTATTCATTCTCTTCTCTTCATTTTGTCTCATTTTTCAGAAGCCAACAAAAAGGAGAAGAGAAGTTTATTTTCCATGCAGAGAAGGAAGAGTTTGCtttctattttattttattttatt-----------tttcaga--
i gorGor5.CYUI01015925v1       C 0 I 161
s colAng1.NW_012115411v1       238181 167 +   1230721 TAtgtgtgtgtgtgtgtgtTTACATCACAATAT--ATCAGTCTTTTCTCTTCATTTTTTCTCATTTTTCAGAAG-CAACAACAAGGAGAAGGTATGTTGA-TTTACATGCAGAGAAGGAAGAGTTTGCTTTCTTTTTTGttttattttattttattatttcatttttgagt
i colAng1.NW_012115411v1       I 542 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835  27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  33830  23 -    177848 I

a score=28160.000000
s hg38.chrX_KI270880v1_alt     126065 124 +    284869 tagagtttcacccttgtcgctcaggctggcgtgcaatggcgcaatctcggctcactgcaacctccacctctggggttcaagcgattctcctgcctcagtctcccaagtagctgggattacagac
s panTro5.chrX                 273164 124 + 155549662 tagagtttcagcctttttgcccaggctggcatgcaatggcgcaatctcggctcactgcaacctccacctctggggttcaagcgattctcctgcctcagtctcccaagtagctgggattacagac
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       238348 124 +   1230721 tggagtttcactcttattgcccaggctggagtgccgtggtgcaatcttgactcacttcaacctccgcctcccacgttcaagtgattctcctgcctctgcctccccagtagctgggattacagac
i colAng1.NW_012115411v1       C 0 T 2112
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835  27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       187027 161 +    417917 I
e panPan2.chrUn_NW_014024190v1  33830  23 -    177848 I

a score=9986.000000
s hg38.chrX_KI270880v1_alt     126189 110 +    284869 acccgccaccacaccAcactgcaacctctgccttctgggttcaagtgattctcctgcctcagcctcctgaatagctgggactacaggtgtctgccaccacacccggctga
s panTro5.chrX                 273288 110 + 155549662 acccgccaccataccAcactgcaacctctgccttctgggttcaagtgattctcctgcctcagcctgctgaatagctgggactacaggtgtccgccaccacacctggctga
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835  27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       187027 161 +    417917 I
e panPan2.chrUn_NW_014024190v1  33830  23 -    177848 I

a score=22748.000000
s hg38.chrX_KI270880v1_alt     126299 98 +    284869 tttttgtatttttag-tagagacgggtttttaccatgttggccaggctggtcttgaacccctgacctcaggtgatcctcccgccttggcct-cccaaaat
s panTro5.chrX                 273398 98 + 155549662 tttttgtatttttag-tagagacggggttttaccatgttggccaggctggtcttgaacccctgacctcaggtgatcctcctgccttggcct-cccaaaat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       187188 99 +    417917 tttttgtacttttagttagagacggggttttaccaagttggccaggctggtcttgaa-ccctgacctcaggtgtcctccctgccttggcctccccaaaat
i gorGor5.CYUI01015925v1       I 161 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835 27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  33830 23 -    177848 I

a score=72999.000000
s hg38.chrX_KI270880v1_alt     126397 166 +    284869 gctgagatgacaggcatgagccaccatgctcggcTGAG-TTTGCTTTCTTTGGAGAGCAAACAGATAGCCCCACCAGAAATGTACTTATTT-ACTTAGTTGCTTGC-ATGTTTGGAGTGGATG-TTGGAGTTTTTCTC---AGCCA-GGGAGGTGAGAAA---GTCTCCATCAAGTA
s panTro5.chrX                 273496 166 + 155549662 gctgagattacaggcatgagccaccgtgctcggcTGAG-TTTGCTTTCTTTGGAGAGCAAACAGATAGCCCCACCAGAAATGTACTTATTT-ACTTAGTTGCTGGC-ATGTTTGGAGTGGATG-TTGGAGTTTTTCTC---AGCCA-GGGAGGTGAGAAA---GTCTCCATCAAGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  33853 166 -    177848 gctgagattacaggcatgagccaccgtgctcggctgag-tttgctttctttggagagCAAACAGATAGCCCCACCAGAAATGTACTTATTT-ACTTAGTTGCTGGC-ATGTTTGGAGTGGATG-TTGGAGTTTTTCTC---AGCCA-GGGAGGTGAGAAA---GTCTCCATCAAGTA
i panPan2.chrUn_NW_014024190v1 I 23 C 0
s gorGor5.CYUI01015925v1       187287 175 +    417917 gctgagattacaggcatgagccaccgtgcTGACGTGAGTTTTGCTTTCTTTGGAGAGCAAACAGATAG-CCCACCA-AAATGTACTTATTTAATTTTGTTGCTGGCTGTTTTTGGAGTGGATATTTGGAGGTTTTTACTCGAGCCAGGGGAGGTGAGAAGAGTACCTCCATCAAGTA
i gorGor5.CYUI01015925v1       C 0 I 18
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835  27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=5487.000000
s hg38.chrX_KI270880v1_alt     126563 22 +    284869 Ctcattcattcattcattcatt
s panTro5.chrX                 273662 22 + 155549662 CTAattcgttcattcattcatt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  34019 22 -    177848 CTAattcattcattcattcatt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835 27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       187462 18 +    417917 I

a score=323908.000000
s hg38.chrX_KI270880v1_alt     126585 697 +    284869 cgttcattcaattcaACTTTGAATTTAAAAGTGGAGAGTTCCCCTCCGTCTGACCACAAAGTGA--TGTGCAGAAGTAGCTT--CATTTT-AAACCTGCAGATAAGATGGATCGGTCTCTGATTTGTAATTAGAAGTGCAGCAGATAACGAGAC-AATCTGAA-TGTCCTACCAAGTCTTTGACCTGTTCTTTGGGAGGTGGCATAACCTTATCTTCAATCATCAAGGCTGCA-CGTGGAGGAG-TTATTCAGG-CAGCTGAAAATATCACCCCAGATCTTGCAGAGGAAGCAACCTAGGAGTCGGAGTGTCCCTGCAGATGCTCCACACACGGGTGGGATAT-AGAAGGAGTGGAGGTGGACGAGGTCTAAGGAGAACAAGGAAAAGGACATGAGAGGATCAGA---GAAGACCTCAATAGCTTAGCCAGGGAAGG---AATTCATGGGAAAAACATTAGG-GGAATTTATAGTCTTGGCAGGGAACCCAAAGATGGAGACTCAGACAACAGGGCAGAACCCAAGGGAGGAAGGTGGTCGGGGAGGACTCTCCAAG--CTG-CCTCTGGGCTCTGG-AGATGTTGC-TGTGGTCATGAGG-AATTTCTGTCCTGCAGCTGATTTCCTTTATTCTCTCAAGGTTCCAAGT-GCTGGGCAGAAAGTCCAGCTCCCTGGATGCCAGGAT-GGGGGGGATAGAG-AATGTATGAGGCTCCAGGATGC
s panTro5.chrX                 273684 696 + 155549662 cgttcattcaattcaACTTTGAATTTAAAAGTGGAGAGTTCCCCTCCGTCTGACCACAAAGTGA--TGTGCAGAAGTAGCTT--TATTTT-AAACCTGCAGATAAGATGGATCGGTCTCTGATTTGTAATTAGAAGTGCAGCAGATAACGAGAC-AATCTGAA-TGTCCTACCAAGTCTTTGACCTGTTCTTTGGGAGGTGGCATAACCTTATCTTCAATCATCAAGGCTGCA-CGTGGAGGAG-TTATTCAGG-CAGCTGAAAATATCACCCCGGATCTTGCAGAGGAAGCAACCTAGGAGTCGGAGTGTCCCTGCAGATGCTCCACACACGGGTGGGATAT-AGAAGGAGTGGAGGTGGACGAGGTCTAAGGAGAACAAGGAAAAGGACATGAGAGGATCACA---GAAGACCTCAATAGCTTAGCCAGGGAAGG---AATTCATGGGAAAAACATTAGG-GGAATTTATAGTCTTGGCAGGGAACCCAAAGACAGAGACTCAGACAACAGGGCAGAACCCAAGGGAGGAAGGTGGTCGGGGAGGACTCTCCAAG--CTG-CCTCTGGGCTCTGG-AGAGGTTGC-TGTGGTCATGAGG-AATTTCTGTCCTGCAGCTGATTTCCTTTATTCTCTCAAGGTTCCAAGT-GCTGGGCAGAAAGTCCAGCTCCCTGGACGCCAGGAT--GGGGGGATAGGG-AATGTAGGAGGCTCCAGGATGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  34041 696 -    177848 cgttcattcaattcaACTTTGAATTTAAAAGTGGAGAGTTCCCCTCCGTCTGACCACAAAGTGA--TGTGCAGAAGTAGCTT--CATTTT-AAACCTGCAGATAAGATGGGTCGGTCTCTGATTTGTAATTAGAAGTGCAGCAGATAACGAGAC-AATCTGAA-TGTCCTACCAAGTCTTTGACCTGTTCTTTGGGAGGTGGCATCACCTTATCTTCAATCACCAAGGCTGCA-CGTGGAGGAG-TTATTCAGG-CAGCTGAAAATATCACCCCGGATCTTGCAGAGGAAGCAACCTAGGAGTCGGAGTGTCCCTGCAGATGCTCCACACACGGGTGGGATAT-AGAAGGAGTGGAGGTGGACGAGGTCTAAGGAGAACAAGGAAAAGGACATGAGAGGATCAGA---GAAGACCTCAATAGCTTAGCCAGGGAAGG---AATTCATGGGAAAAACATTAGG-GGAATTTATAGTCTTGGCAGGGAACCCAAAGACGGAGACTCAGACAACAGGGCAGAACCCAAGGGAGGAAGGTGGTCGGGGAGGACTCTCCAAG--CTG-CCTCTGGGCTCTGG-AGAGGTTGC-TGTGGTCATGAGG-AATTTCTGTCCTGCAGCTGATTTCCTTTATTCTCTCAAGGTTCCAAGT-GCTGGGCAGAAAGTCCAGCTCCCTGGATGCCAGGAT--GAGGGGATAGAG-AATGTAGGAGGCTCCAGGATGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       187480 706 +    417917 CGTTAATTC-ATTCAACTTTGAATTT-AAAGTGGAGAGTTCCC--CCGTCTGACCAAAAAGTTGATTGTGCGAAGTTAGCTTTCCATTTTAAAACATGCAGATAAGATGGATCGGTCTCTGATT--TAATTAGAAGTGCAGCAGATAA-GAGACAAATCTGAATTGTCCTACCAAGTCTTTGACCTGTTCTTTGGGAGGTGGCATAACCTTATCTTCAATCATAAGGCTTGCACCGTGGAGGAGTTTATTCAGGCCAGTCGAAAATATCACCCCAGATCTTGCAGAGGAAGCAACCTAGGAGTCGGAGTGTCCCTGCAGATGCTCCACACACGGGTGGGATATGAGAGGGAGTGGAGGTGGA--AGGTTAGAGAA----AAGGAAAAGACGATGAGAGGATCAAAGAGGAAGACCTCAATAG-TTAGCCAGGGAAGGATTAAATGATGGGAAAAACATTAGGAAGAATTTATAGTCTTGACAGGGAACCAAAAGACGGAGACT-AGACAACAGGGCAGAA-CCAAGGGAGGAAGGTGTCGGGGGAGGACGTCCAAAGGACTGACCTCTGGGCTCTGGAAGAGGTTGCGTGTCGTCATGAGGAAATTTCTGT-CTGCAGCTGATTTCCTTTATTCTCTCAAGGTTCCAAGTGGCTGGGGAGAAAGTCCAGCT-CCTGGATGCCAGGATGGGGGGGAATAGAGAAATGTAGGAGGCTCCAGGATGC
i gorGor5.CYUI01015925v1       I 18 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             187835  27 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=400860.000000
s hg38.chrX_KI270880v1_alt     127282 725 +    284869 CAAAGAGGGAGGTGACGCTGGTTCCCACTGAGACGT-GTGAGGCAGGAATGACCCCAAAATGACAAGGCTCCGAGTCCCAGCACGA-TGA-TTCAGCTTCC-CCATCTCACGTGTTC--ATGGAAGGAGCAT-GAGGAACTCAGGCATCAGGAAGAAAGT------GCCCTCGGTTTGGGGTGGGGCGAGCTTTGGGAACCTCAGGAAACATTTCACGATGAC---CAACAGGATCAGCCAG-TGGGAGAGGAAGAGG-AGATTTGTTG--CAACCTTGAGGTGGGTTCACTGTGGACACAAATCAGAGGCAGGACAGCCACAGAGAGGACCAACTATTGGCC-ACGTGTGGGTAAGA-GGAAAGAATTGT-GACTGGGTTCACAGT-GCAGGGGGCATGG-ATTGAAAAGCAGG-ACACATCTTCCTCTCTTCTGGTTTCATTGA-GCCTTTGCTAAATAG-AAGCTAGAATCTCATAGACCTGGTGGCAGCt-gtcttactcccttggtgttgatatggcag-aatgccatagactgcatggcttagaaacaataaga-atttactgctcacagctctagaggctgggaagtctcagatcaacgcgtggtag-atttggtgtttggtggggaaagtcccagatc-aaggcgtggtagattttgtgtttgatggggacctgtttg-ctcattcatagacggtgccatcaggctg------------tgtcctcatatggtgaaagggg--tgagggagctctctgaggtccc
s panTro5.chrX                 274380 726 + 155549662 CAAAGAGGGAGGTGACGCTGGTTCCCACTGAGACGT-GTGAGGCAGGAATGACCCCAAGATGACAAGGCTCCGAGTCCCAGCACGA-TGA-TTCAGCTTCC-CCATCTCACGTGTTC--ATGGAAGGAGCAT-GAGGAACTCAGGCATCGGGAAGAAAGT------GCCCTCGGTTTGGGGTGGGGCGAGCTTTGGGAACCTCAGGAAACATTTCACAATGAC---CAACAGGATCAGCCAG-TGGGAGAGGAAGAGG-AGATTTGTTA--CAACCATGAGGTGGGTTCACTGTGGACACAAATCAGAGGCAGGACAGCCACAGAGAGGACCAACTATTGGCC-ACGTGTGGGTAAGA-GGGAAGAATTGT-GACTGGGTTCACAGT-GCAGGGGGCACGG-ATTGAAAAGCAGG-ACATGTCTTCCTCTCTTCTGGTTTCATTGA-GCCTTTGCTAAATAG-AAGCTAGAATCTCATAGACCTGGTGGCAGCt-gtcttactcccttggtgttgctatggcag-aatgccatagactgcatggcttagaaacaataagacatttactgctcacagctctagaggctgggaagtctcagatcaacgcgtggtag-atttggtgtttgctggggaaagtcccagatc-aaggcgtggtagattttgtgtttgatggggacctgtttg-ctcattcataggcggtgccgtcaggctg------------tgtcctcatatggtgaaagggg--tgagggagctctctgaggtccc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  34737 726 -    177848 CAAAGAGGGAGGTGACGCTGGTTCCCACTGAGACGT-GTGAGGCAGGAATGACCCCAAGATGACAAGGCTCCGAGTCCCAGCACGA-TGA-TTCAGCTTCC-CCATCTCACGTGTTC--ATGGAAGGAGCAT-GAGGAACTCAGGCATCGGGAAGAAAGT------GCCCTCGGTTTGGGGTGGGGCGAGCTTTGGGAACCTCAGGAAACATTTCACGATGAC---CAACAGGATCAGCCAG-TGGGAGAGGAAGAGG-AGATTTGTTA--CAACCATGAGGTGGGTTCACTGTGGACACAAATCAGAGGCAGGACAGCCAAAGACAGGACCAACTATTGGCC-ACGTGTGGGTAAGA-GGAAAGAATTGT-GACTGGGTTCAGAGT-GCAGGGGGCATGG-ATTGAAAAGCAGG-ACATGTCTTCCTCTCTTCTGGTTTCATTGA-GCCTTTGCTAAATAG-AAGCTAGAATCTCATAGACCTGGTGGCAGCt-gtcttactcccttggtgttgctatggcag-aatgccatagactgcatggcttagaaacaataagacatttactgctcacagctgtagaggctgggaagtctcagatcaacgcgtggtag-atttggtgtttggtggggaaagtcccagatc-aaggcgtggtagattttgtgtttgatggggacctgtttg-ctcattcataggcggtgccgtcaggctg------------tgtcctcatatggtgaaagggg--tgagggagctctctgaggtccc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       188186 729 +    417917 CAAAGAGGGAGGTGAC-CTGGTT-CCACTGAGACGTGGTGAGGCAGGAATGA-CCCAAGATGACAAGG-TCCGAGTCCC-GCACGAGTGATTTCAGCTTCCGCCATCT-ACATGTT---AT-GAAGGAGCATGGAGGAACTCAGGCATCAGGAAGAAAGT------G-CCTTGGTTTGGGGTGGAGCGAGCTTTGGGAA-CTCAGGAAACGTTTCACGATGAC---CaacaggatcagccagatgggagaggaagaggaagaTTTGTTAACAAACCATGAGGTGGGTTCACTGTGGGAAC-AATCAGAGGCAGGACAGC--AAGAGAGGACCAACTATTGGCCAACGTGTGGGTAAGA-GGAAAGAATTGTGGACTGGGTTCACAGTGGCAGGGGGCATGGAATTGAAAAGCAGGAACACGTCTTTCTCTCTTCT-GTTTCATTGAGGCCTTTGCTAAATAGAAAGCTTAGAATTCATAGACCTGGTGGCGGCTGgtcttagttccttggtgttgctatggcagaaatgccatagactgcatggcttagaa--aagtagacatttactgctcacagctgtaaaggctgggaagtctcagatcaacgcgtggtagaatttggtgtttggtggggaaagtcc--gatcaaaagcgtggtagattttgtgtttgatggggacctgtttgcctcattcatagatggctctgtc-ggctg------------tgt-ttcatatggtgaaaaggggttgagggagctctctgaggtccc
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             187862 665 +  11138919 CACAGAAATAGGTGGGAAAGGCCACCACTAAGGGCT-GCAAGGT-GGAACGA-CCCAAGGTGAGAAGGCTCCAAA--CTGTCACAG-GGA--------TCT-CCAT-----GTGTTCTAATGGAGGA---CT-GGGGAATAGAGGGACCAGGAAGGAGGCAGAGGAGCATTTTATTTGGGG-GGAGGGAATTTCAGGGACCTCAGGGAGGATTTCA--AGGACTGGCAACATGACCAGCTCA-TGGGAAAGGAAGAGG-ATTTTTGTAA--CAATCATGAAATAGGTTCATTGTGGACACAAATGAGATGCAGAGCAGACAAATTGAGAGCCAGTTACTGGCC-GAGTGTTGGTGAGAGGGAAAAAAATGC-ATCTCTGGTCATCAC-ATTATAGACATGT-ATTGAAAAA-AGA-GTGCCTTTTCCTCTCTCATGACTACATTTA-GACTTTGCTAAATAT-AAACTAGAATCTCATAGATCTAGTGACAGTt-gtcatagtccatttgggtaacaaaggtac-------atagacag-gtggattataaatagtaa-acatttactgctcacagtcctgaaggctga--------------------------a--------------------------gatc-ccggtgtggcacaggctgtgtctggtggggactcactc--ctggttcatagatggcaccat--agatggcacctcctcactgtcttcatacagtggaaaggg--ccaggggtctctctggggtccc
i otoGar3.GL873584             I 27 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=82645.000000
s hg38.chrX_KI270880v1_alt     128007 176 +    284869 cccttttttt--gagatggagttatgctcttgt-accccaggctggagtgcgatggcacgatcttggctcgctgcaacctctgcctcctgggttcaactgactct-cccgcctcagcctcccaagtagctgggattatagg-tgtccaccaccaagcctggctaattcttgta-tttttagt
s panTro5.chrX                 275106 176 + 155549662 tccctttttt--gagatggagttatgctcttgt-acccccggctggagtgcgatggcacgaccttggctcgctgcaacctctgcctcctgggttcaactgactct-cctgcctcagcctcccaagtagctgggattatagg-tgtccaccaccaagcctggctaatttttgta-tttttagt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  35463 176 -    177848 CCCttttttt--gagatggagttatgctcttgt-accccaggctggagtgcgatcgcacgatcttggctcgctgcaacctctgcctcctgggttcaactgactct-cctgcctcagcctcccaagtagctgggattatagg-tgtccaccaccaagcctggctaatttttgta-tttttagt
i panPan2.chrUn_NW_014024190v1 C 0 I 20
s gorGor5.CYUI01015925v1       188915 180 +    417917 CCtttttttttgaagatggagttatgctcttgtaaccccaggctggagtgcgatggcagatccttggctcgctgcaatcctctgctcctgggttcaa-tgactctccctgcctcagcctcccaagtagctgggattataggttgtccacca-caagcctggctaatttttgtattttttagt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             188527   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=78907.000000
s hg38.chrX_KI270880v1_alt     128183 372 +    284869 acatatggggtttc--accatgttggccaagctggtctcgaactcctgacctcaggtgat-cctcctgccttggcct-cccaaaatgctgggatt-acaggcat-gagccaccgtgcc-tggcctggggtcccccactcc------ttttttttttttttttccttttttagatggaattttgc-tctgttgccaggc-tggagtgcagt-ggtgcgatctcagctcactgcaacctctgccacccgcattcaagggattct-cctgcctcagcctcccaagtagctgggattacagg--tgtccaccaccacgcctggctaatttttgtatttttaggagagacagggtttcaccattgttggc-caggctggtctcgatctcttgacttt
s panTro5.chrX                 275282 371 + 155549662 agatatggggtttc--accatgttggccaagctggtctcgaactcctgacctcaggtgat-cctcctgccttggcct-cccaaagtgctgggatt-acaggcgt-gagccactgtgcc-tggcctggggtcccccactcc-------tttttttttttttttccttttttagatggtattttgc-tctgttgccaggc-tggagtgccgt-ggtacgatctcagctcactgcaacctctgccacctgcattcaagtgattct-cctgcctcagcctcccaagtagctgggattacagg--tgtccaccaccatgcctggctaatttttgtatttttaggagagacagggtttcaccattgttggc-caggatggtctcgatctcttgacttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       189095 380 +    417917 agatatggggtttctaaccatgttggccaagc-ggttctgaacttctga-ctcaggtgatccctcctgccttggcctccccaaagtgctgggattaacaggcgtagagcca-GGTGCCGTGGGCTGGGGT--CCCACTCCttttttttttttttttttttttctttttttagatggaattttgcatctgttgccaggcttggagtgcagtgggtgcgattccagctcactgcaacctctgccc----cattcaagtgcttctccctgcctcagcctcc--agtag-tgggattacaggtttgtccaccaccatgcctggctaatttttgtatttttaggagagacagggtttcaccattgttggcacaggatggtctcgatctcttgacttt
i gorGor5.CYUI01015925v1       C 0 I 19
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             188527   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=1388.000000
s hg38.chrX_KI270880v1_alt     128555 19 +    284869 gtgatctgccagcctcggc
s panTro5.chrX                 275653 19 + 155549662 gtgacctgcccacctcggc
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             188527  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189475 19 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=6453.000000
s hg38.chrX_KI270880v1_alt     128574 24 +    284869 ctcccaaagtgctgggattacagg
s panTro5.chrX                 275672 24 + 155549662 ctccgaaagtgctgggattacagg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       189494 24 +    417917 ctcccaaagtgctgggattacagg
i gorGor5.CYUI01015925v1       I 19 I 249
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             188527  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=1528.000000
s hg38.chrX_KI270880v1_alt     128598 16 +    284869 cctggggtctgtaatt
s panTro5.chrX                 275696 16 + 155549662 cctggggtctgtaatt
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e otoGar3.GL873584             188527  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=23380.000000
s hg38.chrX_KI270880v1_alt     128614 128 +    284869 tttataaaggcactaatcccattcatgaggcttcatcctcacaatctcatcaccttcca-aaactctacttcctaacaccatcaccttagcggttagggattcaacatagcaatttgtcgggggaacac
s panTro5.chrX                 275712 128 + 155549662 tttataaaggcactgatcccattcatgaggcttcatcctcacaacctcatcaccttcca-aaactcgacttcctaacaccatcaccttagcggttatggattcaacatagcaatttgtcgggggaacac
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             188527 125 +  11138919 tttataaggaagctgatcccatccatgaggttccaccctcaggacctcgtcacctcctagagaacccacctcctcataccaccaccttggggatgaggattttagcatagaagttt----ggggaacac
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             179179 6740 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=3822.000000
s hg38.chrX_KI270880v1_alt     128742  66 +    284869 -gacattcagtgtataCTGACCGTTGTTCTTCAAACACCTGCT--------AAATTATAA-----------------------------------------------------------------------------------------------TTAATATCATTATGG
s panTro5.chrX                 275840  66 + 155549662 -gacattcagtgtataCTGACCGTTGTTCTTCAAACACCTGCT--------ACATTATAA-----------------------------------------------------------------------------------------------TTAATATCATTATGG
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             185919  66 +    465904 -GACTTTTAATGTGCACTGACAGTTTGTGTTTAAACACCTGCT--------GAGCTGCCA-----------------------------------------------------------------------------------------------TCACAATCATTACGG
i saiBol1.JH378345             I 6740 I 314
s otoGar3.GL873584             188652 169 +  11138919 acacattcagaccacagcaGCAATTG-TCTCCCAGGACTTGCTCTACCCTCAAGTCACAAGATCTACAAATAAACCACACACCACAGCTCAGACCTCTGGCACTACTGGGAAGCAGAGAACATCATGAAGTTCAAATTCATACAATGGATCTAATTTAATATTGCTATTA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=7438.000000
s hg38.chrX_KI270880v1_alt     128808 27 +    284869 GAGAACACCCTTACCATAGAATATTCC
s panTro5.chrX                 275906 27 + 155549662 GAGAACACCCTTACCATAGAATATTCC
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             186299 27 +    465904 GAGAACAGTCTTACCATAGAATATGCC
i saiBol1.JH378345             I 314 I 396
s otoGar3.GL873584             188821 26 +  11138919 -AAAAATCTCAAATGATAGCATATCTT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=5189.000000
s hg38.chrX_KI270880v1_alt     128835  67 +    284869 CACCACCAGGATCTCCGTGATATACCTTCCAACTCTGCAAAATAA--------------------------------CAAAACAGC--------------------------AAAACAACACAAC
s panTro5.chrX                 275933  99 + 155549662 CACCACCAGGATCTCCGTGATATACCTTCCAACTCTGCAAAATAACAAAACAATAACATCCGTAAAACTTTGCACATCAAAACAAC--------------------------AAAACAACACAAC
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             188847 107 +  11138919 -GCCCTCCAGACCTCCACGGTATATCTTCTGACTGTGCATGTGAA------------GACCATACAACTTTGTATATCAGAATAACATCCCTCTATTCCCCACTCCTCCATGAGAAAAAT-----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             186326 396 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       238472 2112 +   1230721 T
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=873.000000
s hg38.chrX_KI270880v1_alt     128902  8 +    284869 GCAAACGG--
s panTro5.chrX                 276032  8 + 155549662 GCAAACGG--
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       236360  8 +   1230721 GCAAACGG--
i colAng1.NW_012115411v1       T 2112 C 0
s otoGar3.GL873584             188954 10 +  11138919 AAAAACCCCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             186326 396 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=126581.000000
s hg38.chrX_KI270880v1_alt     128910 275 +    284869 AATAAAACCCTTTTCTTTTGACTGAGTGCAGGGCAAGTTAGAAAACTCCCCAA----AGATGAGTTTCTCCTCCttttttttttttttttt--ttGAGTTATGAGCAG-AAAAAGTTTGGACACT-TTCGCAGAACTCAGAAACATATTAATTTTTCACGGCCTCGTAAGTCAAAAATGGCTTGTCCAATTTGCTTCAAACTTCGCAGCCTGATAGAAAG-CCCCAGAACTTTCCAGCCAGAGAAGATATTTTGTCAGAGTTGGAAGGAGGTCAGAAG-AGGGCA
s panTro5.chrX                 276040 209 + 155549662 AATAAAACCCTTTTCTTTTGAC------------------------------------------------------------------------TGAGTTATGAGCAG-AGAAAGTTTGGACACT-TTCGCAGAACTCAGAAACATATTAATTTTTCACGGCCTCGTAAGTCAAAAATGGCTTGTCCAATTTGCTTCAAACTTCGCAGCCTGATAGAAAG-CCCCAGAACTTTCCAGCCAGAGAAGATATTTTGTCAGAGTTGGAAGGAGGTCAGAAG-AGGGCA
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       236368 283 +   1230721 AATAACACGCTTTTCTTTCGACTGAGGGCAGGGCAAGTGAGAAAACTCTCCAAAGACAGATGAGTTTCTCCttttttttttcttttttttttattGAGTGATGAGCAG-AAAAAGTTTGGACGCTCTTCATGGAACTCAGAAACATATTAATTTTTCACAGCCTCGGAAGTCAGAAATGGCTTGTCTCATTTGCTTCAATGTTTGCAGCCTGAGAGAAAGCCCCCGGAACTTTCCAGCCAGAGGAGATATTTGGTCAGAGTTGCAAGGAGGTCAGAAG-AGGGCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             186722 263 +    465904 AGTAAAACCCCGCTCTGCTGCCCGCGCGCAGGGCCGCGTTAGAAACTCTGCGA----ACGTGA----------CTTTTCTCCTTTTTCTTC---TGAGTTGTGAGCCG-AGCAGCTTGGGGCCCTTTTCACGGGACTCAGAAGCATG--AAGGTTTCACGGCCCTGGACGTCAGAAATGGCTCGTCCAATTTGCTTCAAAGTCCGCAGCCCGAGACGGAA-CCGCAGGACGTTCCGGCCAGAGGAGACGTCCTGTCAGGGTTGGAAGGAGGTCAGAAG-AGGGCA
i saiBol1.JH378345             I 396 I 693
s otoGar3.GL873584             188964 259 +  11138919 AATAATACCCTTCCCTCTTGACCAAGTGCATGAAAAGTTAG--AACTCTCCAA----AGATGG---CCCCCCCCTTTT----------------TGAGTTTTGAGTGGAAAAAAGTTTGGGCACTTTTCACAAAAGTCAGAAACATATTAATTTTTCAGAGCCTTGTAAGTCAAAAATGGCTTGTCCAATTTGCTTCAAACTTTGCAGCCTGAGATGAAG-TCTGAGAACTTTCTGGCCAAAGGAGATATTTTGTCAAGAGTTGAAGGAGGTCAGAGGAAGGGCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=45463.000000
s hg38.chrX_KI270880v1_alt     129185 133 +    284869 TTAATGTGGAGGATGTGAAGACCTGGGCCCCGACCCTTGATGGGCCTATCTGTAATTAGCTGGAGCCCTCCCCCGGATTTGGGGTTGACAGACGCTCAGGACAG-CA----CGATGATCTCAAGGGCGTCAAAGGGCA
s panTro5.chrX                 276249 133 + 155549662 TTAATGTGGAGGATGTGAAGACCTGGGCCCCGACCCTTGATGGGCCTATCTGTAATTAGCTGGAGCCCTCCCCCGGATTTGGGGTTGACAGACGCTCAGGACAG-CA----CGATGATCTCAAGGGCGTCAAAGGGCA
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       236651 132 +   1230721 TTCATGTGCAGGATGTGAAGACCTGGGTCCCGACCCTGGGTGGGC--ACCTGTAATTAGCTGGAGCCCTCCCCCGGATTTGGGGTTGACGGACGCTCAGGACAGCCA----CGATGGTCTCAACGGCGTCCAAGGGCA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             189223 124 +  11138919 TAAATGCTAAGGATGTGAGAGCCTGGAAC-----------TGGGA-TCCCAGTAATTAGCTGGAGCCCTCTCCCTGATCCAGGGTGGACAGATGCTTAGGATGA-CAGCTTTGATGG-CACAAGGGCATCTGAAGACA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             186985 693 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=53638.000000
s hg38.chrX_KI270880v1_alt     129318 115 +    284869 AAGCTT-CCCCATCAATGGCTC-TGTTTGGAGAGGGAGTAGCTGGGGGAGTCAGGGACTCAGCGTGGGGCTCACACCCTCTTTTACCGAGCACTTCTGATTTATATTA-TAAAAATCT
s panTro5.chrX                 276382 115 + 155549662 AAGCTT-CCCCGTCAATGGCTC-TGTTTGGAGAGGGAGTAGCTGGGGGAGTGAGGGACTCAGCGTGGGGCTCACACCCTCTTTTACCGAGCACTTCTGATTTATATGA-TAAAAATCT
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       236783 116 +   1230721 AAGCTTCCCCCGCCAGTGGCTC-TCCTTGGTGAGGGAGTCGCTGGGGGAGTCAGGGATCCCGCGTGAGGCTCACCCTCTCTTTTCCCGAACACTTCTAATTTATATTA-TAAAAATCT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             187678 116 +    465904 AAGCTT-CCCCGTCCACGGGTC-TCCTTGGAGAGGTTCCAGCTCAGGAAGTCAGGGACCCCGCGTGGGCCTCAGACCGTCCCTTCCCGTCCGCTTCTGATTTACATTATTAAAAATCT
i saiBol1.JH378345             I 693 I 309
s otoGar3.GL873584             189347  95 +  11138919 ---ATT----------CGGCTCATTCCAGGAGAGA---------AGGGAGTCAGGGACCCAGGGTGGGGCTCACTGCATCTTTTCCAAAGCACTTTGGGTTTCCAGCG-TAAAAATCT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=6550.000000
s hg38.chrX_KI270880v1_alt     129433 7 +    284869 CATTTTC
s panTro5.chrX                 276497 7 + 155549662 CATTTTC
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1       236899 7 +   1230721 CATTTTC
i colAng1.NW_012115411v1       C 0 I 14440
s saiBol1.JH378345             188103 7 +    465904 CATTTTC
i saiBol1.JH378345             I 309 C 0
s otoGar3.GL873584             189442 7 +  11138919 CATTTTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=79163.000000
s hg38.chrX_KI270880v1_alt     129440 604 +    284869 AG---AAAAGAAGGGAGTTTTACATGGGATAGGGTGGTGTGAAATCAGCAAATCAGCAAAAAGAAAACAAAACAAAAACGCTTTTCAGG--AAAACGAT-----GATGGA-TTTGGGTGGGGAGAGGGC-AGAGCTCCTGGGACCTGATTACTGTTAATTTGTAATCCAGGGAGGTCCTGAGCCTGGTGAAATATTAATGCTTGAGAAAGGCCACTGTCTTCTGATTCTTTCTGTGC-------------TTTTGGGACAATCCCAATGGATGCAACACACCCCCGCGTTGATTTATTTAT--GTTCACAGCATGGCCGA-GGCAGCAGGAGACCCCAAGTTGTATTCAAAATATCCAAAAGGGGCTTTTCTTTTTCCCTTTGTTTATTCAAAATATTCAAAAAGGGCTTTTCTTTTTCCCTTTGTTTCCGCGATTTCT----GCGCTGTTGGCTGAAAGTGCTCTGAGTTCACGCGCTACGGGGGGTGACTTCCATTTCTGCAGACAGCAGCCTTGGGGATGGCCTGGCGAGGGCTAGGAATACCACACCCTGATCCCATT-CTTCCTGGCTCA--GTCCTGACTGTGAGAGTCACGGTGGACTCTGGGTTTTTCGgtttt-tttgtttgtttgttttt
s panTro5.chrX                 276504 599 + 155549662 AGAAAAAAAGAAGGGAGTTTTACACGGGATAGGATGGTGTG--------AAATCAGCAAAAACAAAACAAAACAAAAACGCTTTTCAGG--AAAACGAT-----GATGGA-TTTGGGCGGGGAGAGGGC-AGAGCTCCTGGGACCTGATTACTGTTAATTTGTAATCCAGGGAGGTCCTGAGCCTGGTGAAATATTAATGCTTGAGAAAGGCCACCGTCTTCTGATTCTTTCTCTGC-------------TTTTGGGACAATCCCAATGGATGCAACACACCCCCGCGCTGATTTATTTAT--GTTCACAGCATGGCCGA-GGCAGCGGGAGACCCCAAGTTGTATTCAAAATATTCAAAAGGGGCTTTTCTTTTTCCCTTTGTTTATTCAAAATATTCAAAATGGGCTTTTCTTTTTCCCTTTGTTTCCCTGATTTCT----GCGCTGTTGGCTGAAAGTGCTCTGAGTTCACGCGCTACGGGGGGTGACTTCCATTTCTGCAGACAGCAGCCTTGGGGACGGCCTGGCAAGGGCTAGGAATACCACACCCTGATCCCATT-CTTCCTGGCTCA--GTCCTGACTGTGAGAGTCACGGTGGACTCTGGGTTTTTGGGTTTTGTTTGTTTGtttg-tttt
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             188110 430 +    465904 AG---AAAAATAGGGGGTTTCCCCTGGGATACGATGGTGTG--------AAATCAGCAAAATA----------AAAAACGTGTTTCAGGAAAAAACCGT-----GGTGAA-TTTGGACGGGGAGGAGGC-AGAGGTGCTGGGAGCTGATGATGGTTCATTTGTAACCCGGGGAGGT-----GCCC------------------------GGCCACCCTCTTCCGACTCTATCTGTGC-------------GTCGGTGACAGTCCCATCGGCCGCAGGACGCCCCCGGCTGGGTTTATGGATTGTTTTGAAGCACGGAGGA-GGCAGCGGGAGACCCCGGGCTCTGCTCA--------AAGGGGGGCT------------------------------------GGAG-------TTTTCCGGTGGTGTTCACGACGTCC----GTGCTGTTCACTGAAGGGACCCTGAGTCCACG-GCCTGGGGCAGAGAATTCCGTGTCTGCAGACCGATGCCCTGG-------CTGGGAGAGG-------------ACTCTGAACC-------------------------------GGAG----GGTGGCCTCTG----------------------------CACT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             189449 549 +  11138919 AG---GAAAAAAAAGGGTTCTGTGCGGGAT--GATGGGGGC--------AAATCAAAAATTTT----------AAAAAC-TATTTCAGG--AAAATGCTATAGGGCTGGAGTTTGGGCTGGGATGAACCGAGGCCCCCCTGGACCCGATTACCACTAATTTGCAATCCAAGGAGGTGCAGAGCTGGGTGAAATATTCATGCTTCAGCAAGGTCATCATCTTTGTGTTCCTCCTGTGCACCCCCACCCTCGCCTTTTAAAAATCCCACCAGATGCAAGACAACCTACGG--GATTTATTTATT-TTTTGAGGCATTGAGCACTGCTGTGGGAGATACCACTTTTTACTGC--------AAAGGGTGTTTTGTTTCTTCTGTT------GTTGAAATAATC----AGGGCTGGTCCCTTCCTGCTTTAGACCATAGAATCCTTTGGCAATCTCAGTTCTATGGGGACTGA--CCATG------GGGAACTGACC----------CGGGGGGCAACCCAAGGAA----GTGGAAAAGGCT------------CCCTGGTACCACCACTACCTGGGCCATCATCC--------AGAGTCATAACTGACTGTGGGTTTTAAG--TTTATTTTTCTCTTTATCatt
i otoGar3.GL873584             C 0 I 2324
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=46266.000000
s hg38.chrX_KI270880v1_alt     130044 250 +    284869 ttgttttttgttttttttttttgacagggagtctcgctctgtcgtccaggctggagtgcagtggtgcaccctaggctcactgcaacctccgactcctgggtt----cgattctactgcctcagcctcccgagtagctgagactacaggcaccggccaccacgcctggctaattttttttatt-------ttttaaatagagatgtggttttgccgtgttggccaggctggtctcgatctcctgatctcaggtgatccacct
s panTro5.chrX                 277103 249 + 155549662 atgttttttg-tttttttttttgacagggagtctcgctctgtcgcccaggctgcagtgcagtggcacaccctaggctcactgcaacctcccactcctgggtt----tgattctactgcctcagcctcccgagtagctgagactacaggcactggccaccatgcctggctaattttttttatt-------ttttaaatagagatgtggttttgccgtgttggccaggctggtctcgatctcctgatctcaggtgatccaccc
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             188540 253 +    465904 CTGTTGTGTG-------ttgttgagaaacggttctgctctgtcgcccaggctggagtgcaatggcgccatctcggctcactgcagcctccgcctcccgggttcaagcgatcctcctgcctcagcctcccgagtagctgggatcacagctgcc-gccaccacaccccgctaatttttattttttatggtattttcattagagacggggtctctccacgttggccaggctgctctcgaactcctgccctcaggggatccgcca
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=71981.000000
s hg38.chrX_KI270880v1_alt     130294 845 +    284869 gcctcggcctcctaaagtgctgggattataggcgtgagacaccatgcctggccTCTGAACTCTGTTTTAAGTTTTTTTTtttttttaattgaggtgagtttcacgaaacatgcaatcaaccattttatttttattacttatgtatttattttgagacagggtctcgctctgctgcccaggctagggtgcactggtgcaatcacagctcactgcagcctcaatgtcctgggctcaggtgatcctcctgcctcagcctcctgagtaggtgagaccgtgggcatgccccaccatgcctggctaatttttgtattattactattttcttggtagagacagggtctcactgtgttgcccaggcccatcttgtactcctggtctcaagcgatcctcctgcctcggcctcccaaagtgctgcaattacacaggtgaggcaacgcagccagcaaccctttcaagcagaaggatttgttggtatttactgaattcaccttgttgtggtagcatatcatctacataataccagaatattgtcatccctcaaaaacagagccaggagaagaactgcccattttccctccccattcccaggcaactcaaaatcttccttctgtctctatgggtttgcctgttctacacatttcgtatatgatgggaATAGGCttttttttttttttttttttttttagaaagagtctcgctctgtcagccagcctggagtgcaacggtgtaatctcggctcagtgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacgggcaccccccaccacactcagctaattttcttttcttt
s panTro5.chrX                 277352 826 + 155549662 gtctcggctttccaaagtgctgggattataggcttgagacaccatgcctggccTCTGAACTCTCTTTTAAGGTTTTTTTtttttttaattgaggtgagtttcacgaaacatgcaatcaaccattttatttttattacttatgtatttattttaagacagggtctcgctctgctgcccaggctagggtgcactggtgcaatcacagctcactgcagtctcaacgtcctgggctcaggtgatcctcctgcctcagcctcctgagtaggtgagaccgtgggcatgccccaccatgcctggctaatttttgtattattactattttcttggtagagacagggtctcactgtgttgcccaggcccatcttgtactcctggtctcaagcgatcctcctgcctcagcctcccaaagtgctgcaattacacaggtgaggcaacgcagccagcaacccttttaaggagaaggatttgttggtatttactgaattcaccttgttgtggtagcatatcatctacataataccagaacattgtc-----------acagagccaggagaagaactgctcattttccctccccattcccaggcaactcaaaatctaccttctgtctctatgggtttgcctgttctacacatttcacatatgatgggaATAGGC--------tttttttttttttttaagaaagagtctcgctctatcagccagcctggagtgcaacggtgtaatctcagttcactgcaacctccacctcctaggttcaagtgattctcctgcctcaacctcctgagtagctgggattacaggcattcgccaccatgcccggctaattttttttttttt
i panTro5.chrX                 C 0 I 5814
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793   0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     131139 19 +    284869 tttctttctttctttcttt
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793  0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e panTro5.chrX                 278178 5814 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=38981.000000
s hg38.chrX_KI270880v1_alt     131158 500 +    284869 tttttgagatggagtctcgctctgttgcccaggctggagtgcagtggcacgatctcagctcactgcaatctccgcctcctgaggtcaagtgattctcctgcctcagcctcccaagtagctgagattacaggtgcc---caccatgccaggctaattttctttttt-----------tgagatggagtcttgctctgtcgcccaggctggagtgcaatggtgagatctcggctcactgcaacctccacctcctgggtttaagtgattctcctgcctcagcctcctgagtagctgagattacaggtgcccaccatgccAGACTAAttttcttttttctttt---------ttctttttttttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcctgggtttaagtgattctcctgcctctgcctcctgagtagctgggattacaggtgcccgccaccatgcccagctaattttcttt
s panTro5.chrX                 283992 523 + 155549662 tttttgagacagagtctcgctctctcgcacaggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggatgacaggcacctgccaccacgcccggctaattttcttttttcttttcttttttgagatcgactcttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcggcctcctgagtagctgagattacaggtgcccaccatgccAGACTAAttttcttttttcttttcttttctttttttttttttttttttttgagatggagtcttgctctgtcgcccaggctggagggcagtggtgtgatctcggctcactgctagctccgcctcctgggtttaagcaattctcctgcctcagcctcctgagtagctggtattacaggtgcccgccaccatgcccggctaattttcttt
i panTro5.chrX                 I 5814 I 19
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793   0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     131658 7 +    284869 ctggttt
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793 0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e panTro5.chrX                 284515 19 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=2584.000000
s hg38.chrX_KI270880v1_alt     131665 28 +    284869 tttttttttttttttttttgagacagaa
s panTro5.chrX                 284534 28 + 155549662 tttttttttttttttttttgagacagaa
i panTro5.chrX                 I 19 I 29
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793  0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     131693 30 +    284869 tcttactctgttgcacaggctggagtgcaa
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793  0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e panTro5.chrX                 284562 29 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=29244.000000
s hg38.chrX_KI270880v1_alt     131723 324 +    284869 tggcataatcttggctcagtgcaacctctgcctcctgggttcaagcgattctgctgccttagcctcctgaatagctgggatgacaggcacccatcaccacgctcagctaatttttgtgtttttagtagagatggggtttctccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgctcctggccaaaaaattattttttatagacctggggttttgctatgttgctccgggtgctctccaattgctgggctcaagcaatccttcc
s panTro5.chrX                 284591 324 + 155549662 tggcataatttcggctcagtgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgaatagctgggatgacaggcacccgtcaccatgctcagctaatttttgtatttttagtagagatagggtttctccatgttggccaggctggtctcgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgctcctggccaaaaaattattttttatagacctggggttttgctatgttgctccaggtgctttccaattgctgggctcaagcaatccttcc
i panTro5.chrX                 I 29 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             188793   0 +    465904 C
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=7030.000000
s hg38.chrX_KI270880v1_alt     132047 42 +    284869 acctcagcctcccaaagtgctgggattacaggcacgaaccgt
s panTro5.chrX                 284915 42 + 155549662 acctcagcctcccaaagtgctgggattacaggcacgaacggt
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             188793 41 +    465904 tcctcagcctcccaaagggctgcgatgac-ggtgggagcccc
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e otoGar3.GL873584             189998 2324 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=14694.000000
s hg38.chrX_KI270880v1_alt     132089 92 +    284869 agcacccgaccGGCCTCTTTATACTATTT-TGCAGGAACATTACCTTGCTTTCAGTGAGTGCAGTTCCCACGAAAAAGCCGCGAGT-ATGGAGA
s panTro5.chrX                 284957 92 + 155549662 agcacgcgaccggccTCTTTATACTATTT-TGCAGGCACATTACCTTGCTTTCAGTAAGTGCAGTTCCCACGAAAAAGCCGCGAGT-ATGGAGA
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             188834 78 +    465904 acccc----ccggccTCTTTACGTTATTT---CGGGAACATTAAGTTGCTTTTAGGAAGTGCTG---------GAAATCCCAGAGCGACGGAGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             192322 86 +  11138919 AGCACCAGGACAGCCATGTCAGAGTTTTACTGCTGAAACGTTAAGTTGGTTTCA-------TGGTTCCCAGGAAAAACCCACATCT-ACAGAGA
i otoGar3.GL873584             I 2324 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189518 249 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=42534.000000
s hg38.chrX_KI270880v1_alt     132181 87 +    284869 AGTTTGCCTAGAAAACTTA---GGCAGTTACTCCTTTTAGATAATTTAACTTCAAAGTCGAA---ACAGGGCATCGCAGAAAG-GATCTGAATT
s panTro5.chrX                 285049 87 + 155549662 AGTTTGCCTGGAAAACTTA---GGCAGTTACTCCTTTTAGATAATTTAACTTCAAAGTCGAA---ACAGGGCATCGCAGAAAG-GATCTGAATT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       189767 92 +    417917 AGTTTGCCTAGAAAACTTAAAGGACAGTTACTCCTTTTAGATAA-TTAACCTCAAAGTTGGAAACACAGGGCATGCCAGAAAG-GATCTGAATT
i gorGor5.CYUI01015925v1       I 249 I 1060
s saiBol1.JH378345             188912 86 +    465904 CGTTGGCCTGGAACACTCA---CTCCGCGGGTCCCTTTACAGAATTAAACGTCAACGTCGAA---ACA--GCGTCACGAAAAGTGACCGGAATT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             192408 87 +  11138919 AGTTTGCAAGAAAAACTTA---GGCAGTTAGTCATTTCAGAGAATTTAACTTCAAAGTCAAA---AGAGGGCATAATAAAAAT-GATCAGAATT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=70999.000000
s hg38.chrX_KI270880v1_alt     132268 306 +    284869 TAGAGGTATGTTTTATTGAATCACTCAAGGCCTAGAAATAGAAATGATCAAAGGGTGTTTGCGAGCGTGCTTTCCAGCTTCTGAGGAGCTGAGCCCAGCTCACTAATGATGGCAATTGTGGTCATAGGTGACTCGCCCCCGAGCTGGGGGTGCCTCTGAGCGCCTCTGCCTTCCACCCTACTGGGGAGCAAGGCTGTGGGGCCACCTCTAATGATTGGTTGT----TATTGTCTGAGGATATCTAGAAATTCAAGAGAGATCTACTTTATACTCTGGAAATGAAGAGCCTT--TTGTATTCAGCAAAGGGAT
s panTro5.chrX                 285136 305 + 155549662 TAGAGGTATGTTTTATTGAATCACTCAAGGCGTAGAAATAGAAATGATCAAAGGGTGTTCGCGAGCGTGCTTTCCAGCTTCTGAGGAGCTGAGCCCAGCTCACTAATGATGGTAATTGTGGTCATAGGTGACTCGCCCCCGAGCTGGGGG-GGCTCTGAGCACCTCTGCCTTCCACCCTACTGGGGAGCAAGGCTGTGGGGCTGCCTGTAATGATTGGTTGT----TATTGTCTGAGGATATCTAGAAATTCAAGAGAGATCTACTTTATACTCTGGAAATGAAAAGCCTT--TTGTATTCAGCAAAGGGAT
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             188998 284 +    465904 TAGAGGAACGTCGCGTGGAATCACCGGAGGCCGAGACAT--CCACGATCAAAGAGCTCTCGGGAGCCCGTGGCTGCGCTTTGGG----------CGAGCTCACGCATGACG------GTGGTCACAGGTGACGC-CCCACAAGCCGACG--GGCCCCGAACGCCTCTGCCTTCCACGCTCCTGGGGTGCAAAGCTGCGTGCCCGGCTCGAACGAGGGCCTGG----CACGGTCTGAGGGTGTCTTGAGAGGCCACAGAGGCGAAGGTGACGCTCTGGACACGAAGGACGTT--TC-TGCTCAGCAAGGGGAT
i saiBol1.JH378345             C 0 I 1517
s otoGar3.GL873584             192495 306 +  11138919 TAGAGGTATGTTTTATTGAGTTACCCAAGGCATGAAAATATAAATGATCAAAGGGTTCACATAGCCGTGTCCTCCCACTTCTGTGGCGCCGAGCCCGGCTCACTAATGATGGAGATTGTGGTCATAGGTGACTC-GCCCCAAGCATCTG--GGATGTGGGTGTTTCTTTTCTCTGCCCTGCCACGTGGCA--GCTGTGTCCCCTGCTCTTATAGTTAGTTGTGTGCTGTTGTCTGAGCATGGCTTGAGATCACAGAGAGGCATATTTTACATTCTGGAAAGGGAAAGTCTTAATT-TATTTGGCAGAGTGGT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189859 1060 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=12664.000000
s hg38.chrX_KI270880v1_alt     132574  96 +    284869 CGGTGTTGAGAGGGGGCTTCACG---GGTGTACACCGTGGGGAGTATC--------------------CCTCCTGGGTTCCAAGCTCAGACAGGTGGCCCAAGACAAGATGTCTGGCTT
s panTro5.chrX                 285441  96 + 155549662 TGGTGTTGAGAGGGGGCTTCATG---GGTGTACACCGTGGGGAGTATC--------------------CCTCCTGGGTTCCAAGCTCAGACAGGTGGCCCAAGACAAGATGTCTGGCTT
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             192801 117 +  11138919 --ATGTTTTGGGTAGTCTTTACGCTCAGAGAACAACTGAGGGGGGGCTGGTGGAAGGAGGGGTTGGCactgcctgggttcccactctggccaggtggcccagggcaaggtatctgcctt
i otoGar3.GL873584             C 0 I 3441
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189859 1060 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=29589.000000
s hg38.chrX_KI270880v1_alt     132670 369 +    284869 TTTAaattttaatttaatttaatttaattttaatttaattttaatttaattttaatttaatttaattttaatttaatttaattttaattttaattttaattttaattaattaattaatttattttcgagacagagtctctctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcggcctccagagtagctgggactacaggcgcccgccaccacgcccggctaattttttgtattt----ttagtagtagagacggggtttcaccgtgttggccaggatggtctcgatctcctgaccttgtgatccacccacctcggcctcc
s panTro5.chrX                 285537 365 + 155549662 TTTAaattttaatttaatttaatttaattttaa------tttaatttaatttaaatttaatttaattttaatttaatttaattttaattttaattttaa--ttaattaattaattaattaatttTCgagacagagtctctctctgtcgctcaggctggagtgcaatggtgcaatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagcagttgggactacaggcgcccgccaccacgcccggctaattttttttttttggtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacttcgtgatccgcccgcctcggcctcc
i panTro5.chrX                 C 0 I 600
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189859 1060 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     133039 80 +    284869 caaagtgctgggatgacaggtgtgagccgccacgcccggccCGttatttttatttttagtacagatgaggcttttctctg
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e panTro5.chrX                 285902 600 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       189859 1060 +    417917 I
e panPan2.chrUn_NW_014024190v1  35639 20 -    177848 I

a score=16489.000000
s hg38.chrX_KI270880v1_alt     133119 225 +    284869 ttgcccaggctgaa-gtgcagt-gacgtgatcagggtccttgcattttttgttttgagacagggtctt-gctctgtcgctcaggatggactgcagggatgtgatcccagctcactgcagcctcagcctcctgggctcaagccatactcctgcctcagcctcctgagtagctggactacaggtgtgtgccagtatgcctggctgtttttttctaaatgatttttttt-gg
s gorGor5.CYUI01015925v1       190919 225 +    417917 TTGCTCAGGCTGAAAGTGCAGTTGATGTGATCAGGGtctttg--ttttttgttttgagacagggtcttagctctgt-gcccaggctgga-tgtagggatgtgatcccagctcactgcagcctcagcctcctgggctcaagccatactccggcctccgcctcccgagtagctggactacaggtgtgtgccactatgcctggctgtttttttctaaatgatttttttttgg
i gorGor5.CYUI01015925v1       I 1060 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e panTro5.chrX                 285902 600 + 155549662 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=115721.000000
s hg38.chrX_KI270880v1_alt     133344 455 +    284869 tagagatggggtctcactatgtctcccaggctgaagctctgtggtgtgatcatagctcactgcagcctcgaactcctgagctcaactgatcctcccacctcagcctcctgaagtgctgggattaggggggtgagccactgcactcagccAACAGATAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtcatcatagctcactgtagcctcgaactcctgggctcaactgatcctcccacctcagcctcctgaagtgctggggtta-ggggggtgagccactgcactcagcCAACAGATAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtcatcatagctcactgtagcctcgaactcctgggctcaactgatcctcccgcctcagcctcctgaagtgctgggattaggggggtgagccactgcactc
s panTro5.chrX                 286502 455 + 155549662 TAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtgatcacagctcactgcaggctcgaactcctgggctcaagtgatcctcccacctcagcctcctaaagtgctgggattaggggggtgagccactgcactcagccaacagatagagatggggtctcgctatgtctcccaggctgaagctctgtggtgtcatgatagctcactgcagcctcaaactcctgggctcaagtgatcctcctgcctcagcctcctgaagtgctgggatta-ggggggtgagccacagcacgcagccAACAGATAgagatggggtctcgctatgtctcccaggctgaagctcagtggtgtgatctcagctcactgcaggctctaactcctgggctcaactgatcctcccgcctcagcctcctgaagtgctgggattaggggtgtgagccactgcactc
i panTro5.chrX                 I 600 C 0
s gorGor5.CYUI01015925v1       191144 456 +    417917 tagagatggcatctcactatgtctcccaggctgaagctctgtggtgtgatcacagctcactgcagcctcgaactcctgagctcaactgatcctcccacctcagcctcctgatgtcctgggattacgggtgtgagccactgcactcagccAACAGATAAagatggggtctcgctatgtctcccaggctgaagctcagtggtgtgatcagagctcactgcagcctcgaactcctgggctcaagtgatcttcctgcctcagcctcctgaagtgctgggattagggggggtgagccactgcactcagcCAACAGGTAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtgatcagagctcactgcagcctcgaactcctgggctcaagtgatcctccaacctcagcctcctgaggtgctgggattacgggtgtgagccactgcactc
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  35639  20 -    177848 I

a score=89268.000000
s hg38.chrX_KI270880v1_alt     133799 165 +    284869 agccaacagatagagatggggtctcgctatgtctcccaggctgaagctctgtggtgtcatcatagctcactgcagcctcgaactcctgagctcaactgatcctcccacctcagcctcctgaagtgctgggattaggggggtgagccactgcactcagccAACAGA
s panTro5.chrX                 286957 165 + 155549662 agccaaCAGATAgagatggggtctcactatgtctcccaggctgaagctctgtggtgtgatcacagctcactgcagcctcgaactcctgggctcaagtgatcctcccacctcagcctcctgaagtgctgggattagcgggatgagccactgcactcagccaacaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  35659 165 -    177848 agccaacagataaagatggggtctcgctatgtctcccaggctgaagctcagtggtgtgatcagagctcactgcagcctcgaactcctgggctcaactgatcctcccgcctcagcctcctgaagtgctgggattagcggggtgagccactgcactcagccAACAGA
i panPan2.chrUn_NW_014024190v1 I 20 C 0
s gorGor5.CYUI01015925v1       191600 165 +    417917 agccaacagatagagatggggtctcgctatgtctcccaggctgaagctctgtggtgtgatcagagctcactgcagcctcgaactcctgggctcaactgatcctcccgcctcagcctcctgaagtgctgggattaggggggtgagccactgcactcagccAACAGA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       236906 14440 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=421844.000000
s hg38.chrX_KI270880v1_alt     133964 600 +    284869 TAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtcatcatagctcactgcagcctcgaactcctgggctcaactgatcctcccgcctcagactcctgaagtgctgggattaggggggtgagccactgcactcagcCAACACATCTGTAAATATGCCTAAGGCATCTATACCGTAGTAGGTTTGCTACAAGGATCAAGCAAGATAGTGTTCTGGAAATACAAGCCTCACCCTTACGAAGCTGTTTCAGCAGGTG--TAACAAATGGCCGTTCACAGAG-TGGC-TCAAAAAAA-------CACACATTTggccaggcgtggtggctcatgcctgtaatcctaccactttgggaggctg-aggtcggaggattgcttgagaccagaagtttgagactatagcctgagc-aacagagtgacgtagtgatactttgtttctagaaaaat-aaaaaaaaaaataattagccgggtgtagatggggggggggggtggtctgt-agtcccagctactcgggaggctgaggcagga-ggatcctttgagc-ccgggagtccgaggc-cgtactgagcta--ggattgcaccactgcac--tccagcctgggcgacag
s panTro5.chrX                 287122 595 + 155549662 tagagatggggtctcactatgtctcccaggctgaagctcagtggtgtgatcacagctcactgcaggctcgaactcctgggctcaagtgatcctcccacctcagcctcctaaagtgctgggattaggggggtgagccactgcactcggccAACACATCTGTAAATATGCCTAAGGCATCTATACCGTAGTAGGTTTGCTACAAGGATCAAGCAAGATAGTGTTCTGGAAATACAAGCCTCACCCTTACTAAGCTGTTTCAGCAGGTG--TAACAAATGGCCATTCACAGAA-TGGC-TCAAAAAAA------ACACACATTTggccaggcgtggtggctcatgcctgtaatcccaccactttgggaggctg-aggtcagaggattgcttgagaccagaagtttgagactatagcctgagc-aacagagtgacgtagtaatactatgtttctagaaaaat-aaaaaataaaataattagccgggtgtagatgggggggga------tctgt-agtcccagctactcgggaggctgaggcagga-ggatcctttgagc-ccaggagtccgaggc-tgtactgagcta--ggattgcaccactacac--tccagcctgggcgacag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  35824 592 -    177848 TAgagatggggtctcgctatgtctcccaggccgaagctctgtggtgtgatcagagctcactgtagcctcaaactcctgagctaaagtgatcctcccacctcagcctcctaaagtgctgggattacgggtgtgagccactgcactcagccaaCACATCTGTAAATATGCCTAAGGCATCTATACCGTAGTAGGTTTGCTACAAGGATCAAGCAAGATGGTGTTCTAGAAATACAAGCCTCACCCTTACGAAGCTGTTTCAGCAGGTG--TAACAAATGACCATTCACAGAA-TGGC-TCAAAAAAA-------CACACATTTggccaggcgtggtggctcatgcctgtaatcctaccactttgggaggctg-aggtcggaggattgcttgagaccagaagtttgagactatagcctgagc-aacagagtgatgtagtgatactttgtttctagaaaaat-aaaaaataaaataattagctgggtgtaggtggggggg--------tctgt-agtcccagctactctggaggctgaggcagga-ggatcctttgagc-ccaggagtccgaggc-tgtactgagcta--ggattgcaccactgcac--tccagcctgggcaacag
i panPan2.chrUn_NW_014024190v1 C 0 I 301
s gorGor5.CYUI01015925v1       191765 598 +    417917 TAgagatggggtctcgctatgtctcccaggctgaagctctgtggtgtgatcatagctcactgcagcctcgaactcctgggctcaagtgatcctcccacctcagcctcctgaagtgctgggattacgggtgtgagccactgcactcagccaaCACATCTGTAAATATGCCTAAGACATCTATACCGTAGTAGGTTTGCTACAAGGATCAAGCAAGATGGTGTTCTGGAAATACAAGCCTCACCCTTACGAAGCTGTTTCAGCAGGTGTTTAACAAATGGCCATTCACAGAAGCGGCTTCAAAAAAA------ACACACATTTggcaggacgtggtggctcatgcctgtaaccctac--ctttgggaggctgaaggtcggaggatt-cttgagaccagaagtttgagactatagcctgagcaaacagagtga-gtagtgtaactttgttttagaaaaaat-aaaaaataaaataattagccgggtgtag--ggggggg--------tctgt-agt-ccacctact-gggaggctgaggcaggagggatcctttgagcaccgggagtccgaggcttgtactgagcaaagggattgcaccactgcaccatccagcctgggcgacag
i gorGor5.CYUI01015925v1       C 0 I 1
s colAng1.NW_012115411v1       251346 590 +   1230721 tagagacggggtctttctatatcttccaggctgaagttcagcagtatcgtcatagctta-tccagcctcgaaatcctgggctcaagtgatcctcccccctcagcctcctaaagtgctaagattgtgggtgtgagccacgacactcagccGACGTATCTGTAAACGTACCTAAGGCATCTATACTGTAGTAGGTTTGCTCCAAGGACCAATCCAGACACGGTTCTGGAAATGCAAGCCTCCCCCTTACGAAGCTGTTTCCGTGGGTG--TAACAAATGGCCATTCGCAGAC-TGGC-TGAAAAAGAAAACGCACGCACATTTggctggacacggtggctcatgcctggaatactatgacacaggggggctg-agactggaggattgcttgagaccagaagttggagac--ttgtctgagc-gacacagcga--------tatctcgtttctagaaaaataaaaaaataaaataattagccgggtgtgggtcgggagg--------tctgtcacccccagctactcaggaggctgaggcagga-gaatggcatgaac-ccgggaggtggaggt-tgcggtgagctg--agatcacgccactgagc--tccagcctgggcgacag
i colAng1.NW_012115411v1       I 14440 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=9342.000000
s hg38.chrX_KI270880v1_alt     134564 17 +    284869 ggcgagactctg----------tctca
s panTro5.chrX                 287717 17 + 155549662 ggcgagactctg----------tctca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  36717 17 -    177848 agcgagaccctg----------tttca
i panPan2.chrUn_NW_014024190v1 I 301 C 0
s gorGor5.CYUI01015925v1       192364 27 +    417917 ggcgagaagctgcctgaaaatttctaa
i gorGor5.CYUI01015925v1       I 1 C 0
s colAng1.NW_012115411v1       251936 17 +   1230721 agcgagactctg----------tctca
i colAng1.NW_012115411v1       C 0 I 111
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=175860.000000
s hg38.chrX_KI270880v1_alt     134581 392 +    284869 aaacagaaaacaacaagaacaagaaG-CC---CCCCGAAAAAACAAG---AAGT-CCTGCCCACTCttttttttt-gagacagttttcctcttgttgcccagggtggagtgcaatggcgtgatctcggctcactgcattttctgcctcccgggttcaagagattctcctgcctcagcctcctgagtagctgggagtacaggcacctg-ccaccacgcctggctaa-ttttgcatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgtgatccacctgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccCTGTCTGTCCCCTTTCCTTTATCTTTTACAACT-CCAGGACTTTAGCATAAGCCTA
s panTro5.chrX                 287734 394 + 155549662 aaacagaaaacaacaagaacaagaaCTCC---CCCCCAAAAAACAAG---AAGT-CCTGCCCACTCttttttttttgagacagttttgctcttgttgcccagggtggagtgcaatggcgtgatctcggctcactgcattttctgcctcccgggttcaagagattctcctgcctcagcctcctgagtagttgggattacaggcaccca-ccaccactcctggctaa-ttttgcatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcatgtgatccacctgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccCTGTCTGTCCCCTTTCCTTTATCTTTTACAACT-CCAGGACTTTAGCATAAGCCTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  36734 372 -    177848 aaacag-aaacaacaagaacaagaaG---------------------------T-CCTGCCCAttcttttttttt-gagacagttttgctcttgttgcccagggtagagtgcaatggcgtgatctcggctcactgcattttctgcctcccaggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcaccca-ccaccacgccctgctaagttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacttcatgtgatccacctgcctcggcctcccaaagtgctgggatgacaggtgtgacccaccCTGTCTGTCCCCTTTCATTTATCTTTTACAACT-CCAGGACTTTAGCATAAGCCTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192391 393 +    417917 aaaaaaaacataaCAAGAACAGGAAGTACAGACCCCCAAAAAACAAGGACAAGTACCTGCCCAttcttctttttt-gagacagttttgctcttgttgcccagggtggagtgcaatggcgtgatctcgg-tcactgcattttctgcctcccgggttcaagagattctcctgcctcagcctcctgag-agctgggattacaggcacccgcccaccagccc--gcaaa-ttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacttcatgtgat-cacctgcct-ggcttcccaaagtgctgggatgacagg-gtg-gccaccCTGTCTGTCCCCTTTCCTTTATCTTTTACAACTCCCAGGACTTTAG-ATAAGCCTA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             192918 3441 +  11138919 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       251953 111 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=49614.000000
s hg38.chrX_KI270880v1_alt     134973 100 +    284869 CAAGTCCTCCCCC---TTCTTTTAAGATTT--TTTTCCTCTTCGATTTCACTCAGCTGAGAGAAAGGGGAGACCTCCCCCCC---------TCCCTTTTCACCAAACACCTACT
s panTro5.chrX                 288128 109 + 155549662 CAAGTCCTGCCCC---ATCTTTTAAGATTT--TTTTCCTCTTCAATTTCACTCAGCTGAGAGAAAGGGGAGAACCCCCCCCCCCCCCACCGTCCCTTTTCACCAAACACCTACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37106 102 -    177848 CAAGTCCTGCCCC---TTCTTTTAAGATGT--TTTTCCTCTTCAATTTCACTCAGCTGAGAGAAAGGGGAGACACCCCCCCC-------CGCTCCTTTTCGCCAAACACCTACT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192784  97 +    417917 CAAGTCCTGCCCC---TTCTTTTAAGATTT-ATTTTCCTCTTCAATTTCACTCAGCTGAGAGAAAGGGGGAGACCCCCCCTC-----------CCTTTTCA-CAAACA-CTACT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             196359  97 +  11138919 CAAATCCTGCCCCGTGTCCTTCCCAGGTGATATTTACCTCCTGAATTTTGGGCAACCTACAGAAAAGTG------CCCCTCT-----------CATTCCCACCAAAGACCTGCT
i otoGar3.GL873584             I 3441 C 0
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e chlSab2.chrUn_KE147541v1     129721 6449 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       251953 111 +   1230721 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=40527.000000
s hg38.chrX_KI270880v1_alt     135073 30 +    284869 CATTTTCCCAAGCTGTACCCACCATACTCA
s panTro5.chrX                 288237 30 + 155549662 CATTTTCCCAAGCTGTACCCACCATACTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37208 30 -    177848 CATTTTCCCAAGTTGTACCCACCATACTCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192881 27 +    417917 CATTTCCC--AGTTGTA-CCACCATACTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136170 30 -    811265 CATCTTCCCAAGTTGTACCCACCGCACTCA
i chlSab2.chrUn_KE147541v1     I 6449 C 0
s colAng1.NW_012115411v1       252064 29 +   1230721 CATTTTCCCAAGTTGTA-CCACCACACTCA
i colAng1.NW_012115411v1       I 111 C 0
s otoGar3.GL873584             196456 30 +  11138919 CACTTTCCCAAGCTGTACCTACAACAGCCA
i otoGar3.GL873584             C 0 I 8
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=49712.000000
s hg38.chrX_KI270880v1_alt     135103 53 +    284869 CAGCAAATTTCATTTAGGATAGACATTTTAttttatttat-----------ttt-----ttttttcatt
s panTro5.chrX                 288267 53 + 155549662 CAGCAAATTTCATTTAGGATAGACATTTTAttttatttat-----------ttt-----tattttcatt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37238 53 -    177848 CAGCAAATTTCATTTAGGATAGACATTTTAttttatttat-----------ttt-----tattttcatt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192908 56 +    417917 CAGCAAA-TTCATTTAGG-TAGGACTTTTAttttttttat-----------ttcatttattttttcatt
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136200 64 -    811265 TAGCAAATTTCATTTACCATAGACATTTTATTTTATTTTTAttttcatttattt-----tattttcatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       252093 53 +   1230721 TAGCAAATTTCATTTACGATAGACATTTTATTTTGTTTAt-----------ttt-----tattttcatt
i colAng1.NW_012115411v1       C 0 I 15
e manLeu1.NW_012108508v1        80301 5303 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196486  8 +  11138919 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=37688.000000
s hg38.chrX_KI270880v1_alt     135156 27 +    284869 tttttgagacagagtctcgctgtgtcg
s panTro5.chrX                 288320 27 + 155549662 tttttgagatggagtctcgctgtgtcg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37291 27 -    177848 tttttgagacagagtctcgctgtgtca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192964 26 +    417917 ttttttgagatgagtctc-ctgtgtca
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136264 27 -    811265 tttctgagacagagtctcgctctgtcg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        85604 27 -    350446 tttttgagacagagtctcgctgcatcg
i manLeu1.NW_012108508v1       I 5303 C 0
s colAng1.NW_012115411v1       252161 27 +   1230721 tttttgagacagagtctcgctctgtcg
i colAng1.NW_012115411v1       I 15 C 0
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196486  8 +  11138919 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=136081.000000
s hg38.chrX_KI270880v1_alt     135183 117 +    284869 cccaggctggagtacagtggcacgatctc-ggctcactacaacc-tccgcctcccgagttcaagtgattctcctgcctcagcctccgg-agtagctgggatgacaggtgcacgtcaACCT
s panTro5.chrX                 288347 117 + 155549662 cccaggctggagtacagtggcacgatctc-ggctcattacaacc-tctgcctcccgagttcaagtgattctcctgcctcagcctccgg-agtagctgggatgacaggtgcacgtcaACCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37318 117 -    177848 cccaggctggagtacagtggcacgatctc-ggctcactacaacc-tccgcctcccgagttcaagtgattctcctgcctcagcctccgg-agtagctgggatgacaggtgcacgtcaacca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       192990 116 +    417917 -ccagggtggagtacagtggcacgatctctggctcactacaacc-tc-gcctcccgagtt-aagtgattctcctgcctcagcctccggaagtagctgggatgacaggtgcacgtcaacca
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136291 118 -    811265 cccaggctggagtgcggtggcgtgatctc-ggctcgctgcaaccttccgcctcccgggttcaagggattctcctgcctcagcctcccg-agtagctgggatgacaggtgcacgtcaACCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        85631 117 -    350446 cccaggctggagggcggtggcgcaatctc-ggctcacggcaacc-tccgcctcccaggttcaagtcattctcctgcctcagcgtcccg-agtagctgggactacaggtgcacgtcaACCG
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196486   8 +  11138919 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=267751.000000
s hg38.chrX_KI270880v1_alt     135300 237 +    284869 CAGCCCACAAGGTGGCCCAAGGC--ACACGGAGTTCACATTG----TACCCACCAT-GGGTCGAAGGTGGGCGTCTGATTCCTC-CTGAAGG----GTGGGGAGCTGTGATGTGAACAGGCCACTTCAATGGGACAGGCGTGATCTCCATTTGGGACTAA-ATACAAGCCCATGGAGGGTCCACAGAGCACCAAGGGAAGCTGGCATTTCAAAACATCTGCCTCGTTTGTCTAAACCACACCACACCACA
s panTro5.chrX                 288464 237 + 155549662 CAGCCCACAAGGTGGCCCAAGGC--ACACGGAGTTCACATTG----TACCCACCAT-GGGTCGAAGGTGGGCGTCTGATTCCTC-CTGAAGG----GTGGGGAGCCGTGATGTGAACAGGCCACTTCAATGGGACAGGCGTGATCTCCATTTGGGACTAA-ATACAAGCCCATGGAGGGTCCACAGAGCACCAAGGGAAGCTGGCATTTCAAAACATCTGCCTCGTTTGTCTAAACCACACCACACCACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37435 234 -    177848 cagcccACAAGGTGGCCCAAGGC--ACGTGGAGTTCACATTG----CACACACCAT-GGGTCGAAGGTGGGCGTCTGATTCCTC-CTGAAGG----GTGGGGAGCTGTAATGTGAACAGGCCACTTCAATGGGACAGATGTGATCTCCATTTGGGACTAA-ATACAAGCCCACGGAGGGTCCACAGAGCACCAAGGAAAGCTGGCATTTC---ATGTCTGCCTCGTTTGTCTAAACCACACCACACCACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193106 231 +    417917 cagcccACAAGATGGCCCAAGGCCAGCACGGAGTTCACATTG----CACCCACCATGGGGTCGAAGGT-GGCGTTGATTCCCTC-CTGAAGG----GTGGGGAGC-GTGATGTGAACAGGCCACTTCAATGGGACAGATGTGA-CTCCATT--GGGATAA-ATACAAGCCCACGGAGGGTCCACAGAGCACCAAGG-AAGCTGGCATTTC---ATGTCTGCCTCATTTGTCTAAACCACACCACACCACA
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136409 203 -    811265 CAGCCCATAAGGTGGCCCAAGGC--ACACGGGGTTCACATTG----CACCCACCAT-GGGTCGAAGGTGGGCCTCGGGTTCCTT-CCAAAGG----GCAGGGAGCCGTGACGTGAACAAGTTACTTCAATGTGACAGGCGTGATCTCCATGTGGGACTAA-ATACAGGCCTGCGGAGGGTCCACAGAGCACCAACGGAAGCCGG----------------------------------CACCACACCACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        85748 203 -    350446 CAGCCCATAAGGTGGCCCAAGGC--ACACGGAGTTCACATTG----CACCCACCAT-GGGTCGAAGGTGGGCCTCGGGTTCCTT-CCAAAGG----GCGGGGAGCCGTGACGTGAACAAGTTACTTCAATGCGACAGGCGTGATCTCCATTTGGGACTAA-ATACAGGCCTGCGGAGGGTCCACAGAGCACCGAGGGAAGCTGG----------------------------------CACCACACCACA
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             196494 244 +  11138919 CAGCCCAGCAGATGGCTCGAAGG--ACATGGAGTCCA-ATTGTTGTTATCCCAGAT-GGGT--GATGTTGCCATGCAATTCCTCACTGAAGGGAGTGGGTGGGGCCACAATGCGGACAGTTCATTTAACTGAAATGGATGTGACTGCAGTTTGGGGTTAAGACTCGAGCCCATGGGCTGCCCACCAGGCACCAAGGGAAGCCAGCATTTCCCACCATCAGCCTCATGTGTCTGAATCCTGTGATGGCAGG
i otoGar3.GL873584             I 8 I 207
e saiBol1.JH378345             189282 1517 +    465904 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=151947.000000
s hg38.chrX_KI270880v1_alt     135537 184 +    284869 CACCACTCTGGGGTCTGTTTGGCCacagagaatcctctagccccaaatgtcagcagagctgaggctga--gagacactgACTGAGGGAC----tctatctatcatctgtcaatcaatcaatcaatcatc--tatctgtctatccattatctatctatttatccacctatcatctatctatctatcatctatc
s panTro5.chrX                 288701 180 + 155549662 CACCACTCTGGGGTCTGTTTGaccacagagaatcctctagccccaaatgtcagcagagctgaggctga--gagacactgACTGAGGGAC----tctatctatcatctgtcaatcaatcaatcaatcatc--tatctgtctatccat----tagctatttatccacctatcatctatctatctatcatccgtc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37669 171 -    177848 CACCACTCTGGGGTCTGTCTGACCACAGGG---------------AATGTCAGCAGAGCTGAAGCTGACTGAGACACTGACTGAGGGACActatctatctatcatctgtcaatcaatcaatcaatcaat--catctgtctatccagtatctatctatttatccacctatc----atctatctattatctctc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193337 166 +    417917 CACCACTCTGGGGTCTGTCTGA-CACAGGG---------------AATGTCAGCAGAGCTGAAGCTGACTGAGACACTGACTGAGGGACGCa-tctatctat-atctgtcaatcaatcaatcaatcaatcatatctgtctatccattactt--ctattatcccaccta------atcatcttattatctcat
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136612 176 -    811265 CACCACGCTGGGGTCTGTGTGACCACAGGGCATCATCCAGCCCCGAATGTCAGCAGAACTGAGGCT----GAGACACTGACTGAGGGACctg-tctatcgaccatctgtcaatcaatcaatcaat------cgtctgtctatccgttaacta-atatttatccacctatcatctg----tcACTCatctatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        85951 180 -    350446 CGCCACGCTGGGGTCTGTCTGACCACAGGGCATCATCCAGCCCCGAATGTCAGCAGAACTGAGGCT----GAGACACTGACTGAGGGACCTG-Tctatcgaccatctgtcaatcaatcaatcaat------cgtctgtctatccgttaacta-atatttatccacctatcatctatctctctctcatccatc
i manLeu1.NW_012108508v1       C 0 I 1572
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196738 207 +  11138919 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=23392.000000
s hg38.chrX_KI270880v1_alt     135721 40 +    284869 tctctct---------catccgtccatccatcgtctattctatctgtca
s panTro5.chrX                 288881 40 + 155549662 tctctct---------catccgtccatccatcgtctattctatctgtca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37840 44 -    177848 tctctct-cattcatccattcatccatccatcatctattctatct----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193503 45 +    417917 tctctcttcattcatccattcatccatccatcatctattctatct----
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     136788 36 -    811265 tctctct-------------catccatccatcatctattctatctatca
i chlSab2.chrUn_KE147541v1     C 0 I 1873
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196738 207 +  11138919 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=4332.000000
s hg38.chrX_KI270880v1_alt     135761 10 +    284869 tcta-tgtatc
s panTro5.chrX                 288921 10 + 155549662 tcta-tgtatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37884 10 -    177848 tcta-tgtatc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193548 11 +    417917 tctattgtatc
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196738 207 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=58343.000000
s hg38.chrX_KI270880v1_alt     135771 144 +    284869 tatccatctagtcatc--catcta-tctatcctg-----tgtgtattta-------------tccattctatgtatctatctatgtatctatctatgtatctatctatgtatctatct---atctatctatctatctatctatc-------------------tatctatctgtcatctatgtatct
s panTro5.chrX                 288931 166 + 155549662 tatccatctagtcatc--catcta-tctatcctg-----tgtgtattta-------------tccattctatgtatctatctatgtatctatgtatctatctatctatctatctatctgtcatctatgtatctatccatctatccatcctgtgtgtatgtatatatctatctgtcatctatgtatct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  37894 120 -    177848 tatccatctattcatc--catcta-tctatcctg-----tatgtattca-------------tccatcc------------------------tatctatctatctatctatctatct---atctatctatctatctgtctatc-------------------aatcaatctgtcatctatgtatct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193559 138 +    417917 tatccatttattcatc--catttattctatcttg-----tatgta-tca-------------tccatcctatctatctatc------tctatctatctatctatctatctatctatct---atctatcttttatcttgtctatc-------------------aatcaatctgtcatctatgtatct
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             196945 164 +  11138919 TATCACTCTGGTCCCCTTCAAGTT-TCTCCCCTGGGGACTGTGCACTAACACCAGAGCCTGGTCCACCCTAT-tatccatttatctctctctctctctctttctctctctatc-atct---atctatc-atctatctttctacc----------------gtctatctatctatcatctgtctatct
i otoGar3.GL873584             I 207 T 319
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=12030.000000
s hg38.chrX_KI270880v1_alt     135915 24 +    284869 atccatctattcatccatct----atcc
s panTro5.chrX                 289097 24 + 155549662 atccatctattcatccatct----atcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38014 28 -    177848 atccatctattcatccatctatacatcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       193697 24 +    417917 atccatctattcatccatct----atcc
i gorGor5.CYUI01015925v1       C 0 I 508
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=56953.000000
s hg38.chrX_KI270880v1_alt     135939 403 +    284869 tgtatgtatttgtccatc-------catccatccatctattctatcatctatct-tcatctatgtatctatccatctattcatccatctatcctgcatgtatttatctatccat-catccatctattctatc----atctatcatctatgtatctatccatctattcatccatctatcctgcatgtatttatctatccatccatccatctattctatcatctatctatcatctatgtatctatccacctattcatcca----tctatcttgtatgtattcatccatccatccatctattctattatctatctatcatctattcatccatctatctatcctgcatgtatttatctatccatccatccatccatctattctatcatctatctgtcttctatgtatctatccatctattcatc
s panTro5.chrX                 289121 318 + 155549662 tgtatgtatttgtccatc-------catccatccatctattctatcatctatct-tcatctatgtatctatccatctattcatccatctatcctgcatgtatttatctatccatccatccatctattcta----------------------------------------------------------------------------------tctatcatctatctatcatctatgtatctatccacctattcatccatctgtctatcttgtatgtattcatccatccatccatctattctattatctatctatcatctattcatcc----atctatcctgcatgtatttatct--------atccatccatctattctatcatctatctgtcatctatgtatctatccatctattcatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38042 379 -    177848 tgtatgtatatatctatcatctatgtatctatccatctattcctccatctatctgtcctgtatgtatttgtccattcatccatccatccatcc-------atccatccatccatccatccatctattctatcatctatctatcatctatgtatctatccatctattcatccgtctatcctgtatgtatttatctatccatccatccataca-tccatc--cattctatcatctatgtatctatccatctattcttccatctatctatcctgcatgtatttatctatccatccatcca----accatccatctat--tctatc---------atctatcatctatgt----------------atctatccatctattcatccatctatctctcttgtatgtatccatccatccatccatc
i panPan2.chrUn_NW_014024190v1 C 0 I 26
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       193721 508 +    417917 I

a score=2156.000000
s hg38.chrX_KI270880v1_alt     136342 23 +    284869 catcttgtatgtatttatccatc
s panTro5.chrX                 289439 23 + 155549662 catcttgtatgtatttatccatc
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       193721 508 +    417917 I
e panPan2.chrUn_NW_014024190v1  38421 26 -    177848 I

a score=40758.000000
s hg38.chrX_KI270880v1_alt     136365 164 +    284869 catgcatctactcaaccatccctcctctatttatcatctctatcatctgtaagtcaatcagtttatccatcatctatcaatcaccca--catctatctt----tattatctatcacctgtctatttatctatctatcctgtatgtatttatccatccatccatccctcca
s panTro5.chrX                 289462 166 + 155549662 catgcatctactcaaccatccctcctctatttatcatctctatcatctataagtcaatcagtttatccatcatctatcaatcacccatccatctatctt----tgttatctatcacctatctatttatctctctatcctgtatgtatttatccatccatccatccctcca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38447 166 -    177848 catgcatctactcatccatccatcctctatttatcatctctatcatctataag----tcagtttatccatcatctatcaatcacccatccatctatctttatctattatctatcacctatctatttatctatctatcctgtatgtatttatccatccatccatccctcca
i panPan2.chrUn_NW_014024190v1 I 26 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       193721 508 +    417917 I

a score=136820.000000
s hg38.chrX_KI270880v1_alt     136529 266 +    284869 tccatccattccctgtctatctctatcatatAGAGAAA-AATGGCAGCCGCGTCCACACTGGCCTCAGAACTCTCTGGTGAGGTTGCACCAATGAAGCAACAGATTGTGAGGATGTCACttttctgg--ttttttttttttcaagatggaatctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctccgcctcttgaggagctgggactacaggt
s panTro5.chrX                 289628 266 + 155549662 tccatccattccctatctatctctatcatatAGAGAAA-AATGGCAGCCGCGTCCACACTGGCCTCAGAACTCTCTGGTGAGGTTGCACCAATGAAGCAACAGATTGTGAGGATGTCACttttctgg--ttttttttttttcaagatggaatctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctccgcctcttgaggagctgggattacaggt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38613 265 -    177848 tccatccattccctatctatctctatcatatAGAGAAA-AATGGCAGCAGAGTCCACACTGGCCTCAGAACTCTCTGGTGAGGTTGCACCAATGAAGCAACAGATTATGAGGATGTCAtttttctgg---tttttttttttcaagatggaatctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcttgaggagctgggactacaggt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194229 265 +    417917 tccatccattccctatctatctCTATCAT-TAGAGAAAGAATGGCAGCAGAATCCACACTGGCCTCAGAACTCTCTGGTGAGGTTGCACC-ACAAAGCAACAGATTATGAGGATGTCACttttctggttttttttttttttcaagatggaatctcactctgtc-cccaggctggagtgcagtggca-gatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcttgaggagctgggactacaggt
i gorGor5.CYUI01015925v1       I 508 I 12
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=2995.000000
s hg38.chrX_KI270880v1_alt     136795 12 +    284869 gctcaccaccac
s panTro5.chrX                 289894 12 + 155549662 gcccatcaccac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38878 12 -    177848 gcccaccaccac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       194494 12 +    417917 I

a score=55426.000000
s hg38.chrX_KI270880v1_alt     136807 133 +    284869 gcctggctaa-tttttgtatttttagtagagatggggtctcaccgtgttggccaggctggtcttgaactagtgaccacaggtgatctgtctgcctcggcctcccaaagtgctgggattacaggcatgagccacc
s panTro5.chrX                 289906 133 + 155549662 gcctggctaa-tttttgtatttttagtagagatggggtctcaccgtgttggccaggctggtcttgaactagtgaccacaggtgatctgctcgccttggcctcccagagtcttgggattacaggcgttagccacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  38890 134 -    177848 gcctggctaattttttgtaattttagtagagatggggtctcaccgtgttggccaggctggtcttgaactagtgaccacaggtgatctgcccgccttggcctcccagcgtcctgggattacaggcgttagccacc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194506 123 +    417917 gcctggctaa-tttttgtatttttagtagag-tggggtctca-cgtgttgg-caggctggtc-tgaactagtgaccacagg-gatctg-ccgccttggcctccca--gtgctggga-taca-gcgtgagccacc
i gorGor5.CYUI01015925v1       I 12 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197109 319 +  11138919 T
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=50386.000000
s hg38.chrX_KI270880v1_alt     136940 85 +    284869 gtgcccagTGA---------CGTCACTTTTCTTTGAATAGTTTAGATCAAACCGCACCAACTGTATGTGACTTTGTTATATCTTTTATTATATG
s panTro5.chrX                 290039 85 + 155549662 acgcccagTGA---------TGTCACTTTTCTTTGAATAGTTTAGATCAAACTGCACCAACTGTATGTGACTCTGTTATATCTTTTATTATATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39024 85 -    177848 atgcccagTGA---------TGTCACTTTTCTTTGAATAGTTTAGATCAAACCGCACCAACTGTATGTGACTTTGTTATATCTTTTATTATATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194629 81 +    417917 gtg-ccAGTGA---------TGTCACTTTTCTTTG-ATAGTTTAGAT-AAACCGCACCAACTGTATGTGACTTTG-TATATCTTTTATTATATG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             196790 93 +  11138919 GTACCCAGTCACCATGGGATTGCTACTTTTCTCTGCATTGTGCAAACAAAACCACATGGATTGTATATGCCTGTT-TATATTTGTTATTATATG
i otoGar3.GL873584             T 319 I 445
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=2184.000000
s hg38.chrX_KI270880v1_alt     137025 4 +    284869 TATA
s panTro5.chrX                 290124 4 + 155549662 TATA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39109 4 -    177848 TATA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194710 4 +    417917 TATA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             196883 445 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188 0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=40706.000000
s hg38.chrX_KI270880v1_alt     137029 70 +    284869 ACAGAAATACATAGT--TATATGTGTTGTATTTGGAAGTGTATCACTGAATG-TGG-TTCTGAGGACCTTGGGG
s panTro5.chrX                 290128 70 + 155549662 ACAGAAATACATAGT--TATATGTGTTGTATTTGGAAGTGTATCACTGAATG-TGG-TTCTGAGGACCTTGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39113 70 -    177848 ACAAAAATACATAGT--TATATGTGTTGTATTTGGAAGTGCATCACTGAATG-TGG-TTCTGAGGACCTTGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194714 68 +    417917 ACA-AAATACATAGT--TATATGTGTTGTATTTGGAAGTGCAT-ACTGAATGTTGG-TTCTGAGGA-CTTGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             197328 72 +  11138919 ATATACATATATAGTGGTGTATTTGTTGCATGTCAGAGTGTATCAGC-ACTG-TGGATTCTCAGGACCCTGGGG
i otoGar3.GL873584             I 445 I 36
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=3276.000000
s hg38.chrX_KI270880v1_alt     137099 6 +    284869 AATTAT
s panTro5.chrX                 290198 6 + 155549662 AATTAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39183 6 -    177848 AATTAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       194782 6 +    417917 AATTAT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             189282 1517 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188 0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=318363.000000
s hg38.chrX_KI270880v1_alt     137105 508 +    284869 TTAATTtaatttaattaatttattgtagagatggggtgtc-atgaggttgctcagactgatctcaaacttctgggctcaagggatcctccctcccttctcggcctcctaaagtgctgggattacaagtg-ggagccactgtgcctggcAGGGGGATTATTTTAAATGCTTCCTAAGCAAAATAAATAATGCATGAGACACTTACTGCATCTGCTCCTCAAATTCCTTCCAAAAGTGCTTTGGggccgggtgcagtggctcacgcctgcaatcccagcactttgggaggctgaggtgggaggatcgctggagccaggagtttgagaccagtctgggcaacatagcaagaccccagctctataa---aaaaaatatc-----------------------------------------ttgggaggccgaggcgggcagatca--tgaggtcaggagatcgaga------------------------------ccatcctggctgacacggtgaaaccccgtctctactaaaaa-tacaaaaa---------------------------------attagctgggcgcggtggcgggcgcctgtagtcccagctactcgg
s panTro5.chrX                 290204 503 + 155549662 TTAATTTAATTTAATTAatttattgtagagacggggtgtc-atgaggttgctcggactgatctcaaacttctgggctcaagggat----cctcccttctcggcctcctaaagtgctgggattacaagtg-agagccactgtgcccggcAGGGGGATTATTTTAAATGCTTCCTAAGCACAATAAATAATGCATGAGACACTTACTGCATCTGCTCCTCAAATTCCTTCCACAAGTGCTTTGGggctgggtgcagtggctcacgcctgcaatcccagcactttgggaggctgaggtggggggatcgctggagccaggagtttgagaccagcctgggcaacatagcaagaccccagctctat-a---aaaaaatatc-----------------------------------------ttgggaggccgaggtgggcagatca--cgaggtcaggagatcgaga------------------------------ccatcctggctgacacggtgaaaccctgtctctactaaaaa-tacaaaaa---------------------------------attagccgggcgtggtggcgggcgcctgtagtcccagctactcgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39189 502 -    177848 TTAATTTAATTTAATTAatttattgtaaagacggggtgtc-atgaggttgctcagactgatctcaaacttctgggctcaagggat----cctcccgtctcggcctcctaaagtgctgggattacaagtg-agagccactgtgcctggcAGGGGAATTATTTTAAATGCTTCCTAAGCACAATAAATAATGCATGAGACACTTACTGCATCTGCTCCTCAAATTCCTTCCAAAAGTGCTTTGGGGCT-ggtgcagtggctcacacctgcaatcccagcactttgggaggctgaggtgggaggatcgctggagccaggagtttgagaccagcctgggcaacatagcaagaccccagctctat-a---aaaaaaaaTC-----------------------------------------ttgggaggccgaggtgggcagatca--tgaggtcaggagatcgaga------------------------------ccatcctggctgacacggtgaaaccccgtctctactaaaaa-tacaaaaa---------------------------------atgagcctggcatggtggcaggcgcctgtactcccagctactcgg
i panPan2.chrUn_NW_014024190v1 C 0 I 7
s gorGor5.CYUI01015925v1       194788 483 +    417917 TTAATTtaatt---ttaatttattgtagaga-ggggtgtcaatgaggttgctcgga-tgatctcaaacttctgggctcaa-ggat----cctcccttctcggcctcctaaagtgtt-ggattacaagtgaagagccactgtgcccggcA-GGGAATTATTTTAAATGCTTCCTAAGCACAATAAATAATGCATGAGACA-TTACTGCATCTGCTCCTCAAATTCCTTCCA-AAGTGCTTTGGggccaggtgcagtggctcacgctg--aatcccagcac-ttgggaggctgaggtgggaggatcgctggagccaggagtttgagaccagcctgggcaacatagcaagacccca-ctctat-a---aaaaaaaatc-----------------------------------------ttgggaggccgaggtgggcagatca--tgaggtcaggagatcgaga------------------------------ccat-ctggctgacacggtgaaaccccgtc-ccactaaaaactacaaaaa-----------------------------------tagctgg--ctggtggagggcgcctgta-tccca--tacttgg
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             190799 612 +    465904 TTAATCTGATTTAAtgtgtttattgtagggacatggtgtc-attcggtgacccacgctggtctcgaactcttgcactgaagggat----cctccgtgctcagcctcctaaagtgctgggattacaagcg-tgagccgctgtgcccagcTGGGGAATCATTTTAAACGCTTTGTAACCACAATAAATAATGCATGACGGAGTCAGCGCATCTGTGTCAATAATTCCTTCCAAAAGTGCTTGGGggccgggcgcagtggctcacgcctgtcatcccaacgttttgggaggctgaggagggaggatcgcttgagtcaggactttgagaccatcctgggcaacatagcaagaccccagttctct-aaataaaaaatatcagtggccgggcgcggtggcccacgtctgtaatcccagccctttgggaggccgaggcaggagaatcgcttgaacccgggaggtgggggttgtggtgagctgagatcgtacactgcactccagcctgggcaacacagcaagaccccatctcaaaaaaaaa-aaaaaaaaaagaaaagaaaaaaaagagagaaaagaaaagaaatcagctatgtggggtggttttcaggggtcgttccggcgactggg
i saiBol1.JH378345             I 1517 C 0
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e otoGar3.GL873584             197400  36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=33128.000000
s hg38.chrX_KI270880v1_alt     137613 123 +    284869 gaggctgaggcaggag---agtggcgtgaacccgggaggcagagcttgcagtgagccgagatcacgccactgcact-ccagcctgggcgacagagtgagactc-------tgtctcaaaaaaaaaaaaaaaaaa
s panTro5.chrX                 290707 123 + 155549662 gaggctgaggcaggag---aatggcgtgaacccgggaggcggagctggcagtgagccgagatcacgccactgcact-ccagcctgggcgacagagtgagactc-------tgtctcaaaaaaaaaaaaaaaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       195271 122 +    417917 gagggtgaggcaggaggaaaatggcgtgaacccgggaggtggagcttgcagtgagctgaggattggccactgcactcccagcctgggcgacagagcgagactc-------tgtt-----aaaaaaaaaaaataa
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             191411 112 +    465904 gaggctgaggcaggag---gat-ccttgagcccaggagg-----------------cgtgaccaCACCTCCGTTCT-GTGGCCTGCACGAGAGACTCGGCCTCCTAAGTTTGCAGCAATAAAAATAAAAATAAA
i saiBol1.JH378345             C 0 I 1157
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e otoGar3.GL873584             197400  36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  39691   7 -    177848 I

a score=40891.000000
s hg38.chrX_KI270880v1_alt     137736 183 +    284869 a-tcaggtagatgtggtggtttccacctgtagtcccagctcctggggagactaaggtgggagcattccttgagcccaggacgtcgaggctgcagtgag-ccaagatcgtaccacagctctccagtctgggcaatagagttagcttctcatctctgcaaaaataaagattaaaaaaaa-TACtctca
s panTro5.chrX                 290830 185 + 155549662 agtcagctagatgtggtggtttccacctgtagtcccagctcctggggaggctaaggtgggagcattccttgagtccaggacgtcaaggctgcagcgag-ccaagatcgtaccacagctctccagtgtgggcaatagagttagcctctcatctctgcaaaaataaagattaaaaaaaaTTACtctca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       195393 180 +    417917 a-tcagctagatgtggtgg-ttccacctgtagt-ccagctcctggggaggctaa-gtgggagcattccttgagcccaggacgtcaggctggcagcgagcccaagatcgtaccacag-tctccagtctgggcaatagagttagcctctcatctctgcaaaaat-aagattaaaaaaaaaTACtctca
i gorGor5.CYUI01015925v1       C 0 I 510
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400  36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e cerAty1.NW_012001098v1       154690 6288 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  39691   7 -    177848 I

a score=13463.000000
s hg38.chrX_KI270880v1_alt     137919 30 +    284869 ttgttcaactcccacttaggagtaagaact
s panTro5.chrX                 291015 30 + 155549662 ttgtgcaactcccacttaggagtaagaact
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       196083 30 +    417917 ttgttcaactcccacttatgagtgagaatg
i gorGor5.CYUI01015925v1       I 510 C 0
s cerAty1.NW_012001098v1       160978 30 -   1025902 ttgttcagctcccacttatgagtaagaaca
i cerAty1.NW_012001098v1       I 6288 I 1
e manLeu1.NW_012108508v1        86131 1572 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  39691  7 -    177848 I

a score=26383.000000
s hg38.chrX_KI270880v1_alt     137949 41 +    284869 tgcggtgtttggttttctgttcctgtgtgagtttgctgaga
s panTro5.chrX                 291045 41 + 155549662 tgcggtgtttggttttctgttcctctgtgagtttgctgaga
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       196113 37 +    417917 tg-ggtgtttggtttt---ttcctgtgtgagtttgctgaga
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161009 41 -   1025902 tgcagtgtttgcttttctgtccttgtgatagtttgctgaga
i cerAty1.NW_012001098v1       I 1 C 0
s manLeu1.NW_012108508v1        87703 41 -    350446 tgcggtgtttgcttttctgtccttgtgataatttgctgaga
i manLeu1.NW_012108508v1       I 1572 C 0
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e panPan2.chrUn_NW_014024190v1  39691  7 -    177848 I

a score=43298.000000
s hg38.chrX_KI270880v1_alt     137990 36 +    284869 atgatggtttccagcttcgtccatgtccctgcaaat
s panTro5.chrX                 291086 36 + 155549662 atgatggtttccagcttcgtccatgtccctgcaaac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39698 36 -    177848 atgatggtttccagctccatccatgtccctgcaaac
i panPan2.chrUn_NW_014024190v1 I 7 C 0
s gorGor5.CYUI01015925v1       196150 35 +    417917 aggatggtttccagcttcgtccatgt-cctgcaaac
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161050 36 -   1025902 atgatggtttccagcttcatccatgtccctgcaaag
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1        87744 36 -    350446 gtgatggtttccagcttcatccatgtccctgcaaag
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e chlSab2.chrUn_KE147541v1     136824 1873 -    811265 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=71309.000000
s hg38.chrX_KI270880v1_alt     138026 52 +    284869 gacaggagctcaccctttttcatggctgcatagtattccatggtgtctgtgt
s panTro5.chrX                 291122 52 + 155549662 gacaggaactcaccctttttcatcgctgcatagtattccatggtgtctgtgt
i panTro5.chrX                 C 0 I 520
s panPan2.chrUn_NW_014024190v1  39734 52 -    177848 aacaggaactcatcctttttcatggctgcatagtattccatggtatatatgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196185 51 +    417917 aacaggaactcatctttttcacaggctgcatagtatt-catggtatatatgg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161086 52 -   1025902 gaggtgaactcatcctttttcatggctgcatagtattccacggtgtctatgt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     138697 50 -    811265 gacacgaactcatcctttttcatggctgcatagtattccatggggtc--tgt
i chlSab2.chrUn_KE147541v1     I 1873 C 0
s manLeu1.NW_012108508v1        87780 52 -    350446 gaggtgaactcatcctttttcatggctgcatagtattccacggtgtctatgt
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=126009.000000
s hg38.chrX_KI270880v1_alt     138078 78 +    284869 gccacattttctttatccagtctatcattgatgggcatttgggttggtcccaagtcttttgctattCCCAGCAGGTTT
s panTro5.chrX                 291694 78 + 155549662 gccacattttctttatccagtctatgattgatgggcatttgggttggtcccaagtcttttgctattCCCAGCAGGTTT
i panTro5.chrX                 I 520 C 0
s panPan2.chrUn_NW_014024190v1  39786 78 -    177848 gccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtcttttgctattCCCAGCAGGTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196236 75 +    417917 gcca-attttctttatccagtctatca-tgatgggattttgggttggttccaagtcttttgctatt-CCAGCAGGTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161138 77 -   1025902 gccacattttctttatgcagtctgtcactgatgggcatttgggttggttctaagtc-tttgctattCCCAGCAGGTTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     138747 77 -    811265 accagattttctttatccagtctatcactgattggcatttgggttggttccaagtc-tttgctattCCCAGCAGGTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        87832 77 -    350446 gccacattttctttatccagtctgtcactgatgggcatttgggttggttctaagtc-tttgctattCCCAGCAGGTTT
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197400 36 +  11138919 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=232842.000000
s hg38.chrX_KI270880v1_alt     138156 128 +    284869 TCAAAGCCCGTCGTCTTTGCTTAGCGTGCACCATGATGTCGGCTCTCTGAATTCACCGTCTTTCTAGATGAGTCCCAGAGTTTTTCTTCATCACTCAGTATTTGGCAACAGGGAAGTTTTTCTAAGCA-
s panTro5.chrX                 291772 128 + 155549662 TCAAAGCCTGTCGTCTTTGCTTAGCATGCACCGTGATGTCAGCTCTCTGAATTCACCGTCTTTCTAGATGAGTCACAGAGTTTTTCTTCATCACTCAGTATTTGGCAACAGGGAAGTTTTTCTAAGCA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39864 127 -    177848 TCAAAGCCCATCGTCTTTGCTTAGCATGCACCATGATGTCAGCTCTCTGAATTCACCGTCTTTCTAGATGAGTCCCAGAGTTTTTCTTCATCACTCAGTATTTGGCAACAGGGAAGTTTTTCTAAGC--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196311 124 +    417917 TCAAAGCCTGTCGTCTTTGCTTAGCATGCACCATGATGTCAGCTCTCTGAATTCACCGTCTTT-TAGATGAGTCCCAGAG-TTTTCTTCATCACTCAGT-TTTGGCAACGAGGAAGTTTTTCTAAGC--
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161215 127 -   1025902 TCAAAGCCCGTCGTCTTTGCTTAGCACACGCCATGACGTCGGCTGTCTGAATTTGCCATCTCTCTAGATGAGTCTCAGGGTTTTTCTTCATCACTCAGTGTTTGGCAACAGGGAAGTTATTCTCAGT--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     138824 127 -    811265 TCAAAGCCCGTCGTCTTTGCTTAGCACACGCCATGATGTCGGCTCTCTGAATTCGCCGTCTTTCTAGATGAGTCCCAGGGTTTTTCTTCATCACTCAGTGTTTGGCAACCGGGAAGTTATTCTCAGC--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1        87909 127 -    350446 TCAAAGCCCGTCGTCTTTGCTTAGCACACGCCGTGACGTAGGCTGTCTGAATTTGCCATCTCTCTAGATGAGTCTCAGGGTTTTTCTTCATCACTCAGTGTTTGGCAACAGGGAAGTTATTCTCAGC--
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             197436 123 +  11138919 TCCAAGCC---CATCTTTGCTTAG--TGCACAGAGATGCCAGTTCATAGAATTCACCTTCTGTCTCAGCAAGTCCCTTGCCCTTCCTTAGTTATCCAGTGTTTGGTGACAGGGAAGTTCTTTTTGGC-A
i otoGar3.GL873584             I 36 I 9
e saiBol1.JH378345             191523 1157 +    465904 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=37231.000000
s hg38.chrX_KI270880v1_alt     138284 23 +    284869 AGTCAAcccatcaatgatagact
s panTro5.chrX                 291900 23 + 155549662 AGTCAAcccatcaatgatagact
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  39991 23 -    177848 AGTCAAcccatcaatgatagact
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196435 22 +    417917 AGTCAA-ccatcaatgatagact
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       161342 23 -   1025902 AGTAAACCCATCGATGATAGACT
i cerAty1.NW_012001098v1       C 0 I 4840
s chlSab2.chrUn_KE147541v1     138951 23 -    811265 AGCAAACCCATCGATGATAGACT
i chlSab2.chrUn_KE147541v1     C 0 I 1688
s manLeu1.NW_012108508v1        88036 23 -    350446 AGCAAACCCATCGATGATAGACT
i manLeu1.NW_012108508v1       C 0 I 3483
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197559  9 +  11138919 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=167021.000000
s hg38.chrX_KI270880v1_alt     138307 366 +    284869 ggataaagaaaatgtggcacatagacaccatggaatactatgcagccatcaaaaaggatgagttcatgtcgttcgcagggacatggatgaatctggaatccatcattctcagcaaactca-cacaggaacagaaaaccaaacactgcatgttctcactcctaagtgggagttgaacaatgagaacacatggacacaggaaggggaacatcacacacccgggcctgtcgagggctgtggggctgtggaagggattgc-atta-ggagaaatTctcaccatctatgaacccctcatttcctcatcgggaaaaatgtacctgaaaatagcgcctgcctctgagtgttgtggtaaggaagcaatgccattatt
s panTro5.chrX                 291923 365 + 155549662 ggataaagaaaatgtggcacatagacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcgttcgcagggacatggatgaagctggaatccatccttctcagcaaactca-cacaggaacagaaaaccaaacactgcatgttctcactcctaagtgggagttgaacaatgagaacacatggacccaggg-ggggaacatcacacactggggcctgtcgagggctggggggctgcggaagggattgc-atta-ggagaaatTCTCACCATCTATGAACCCCTCATTTCCTCATCGGGAAAAATGTACCTGAAAATAGCGTCTGCCTCTGCGTGTTGTGGGAAGGAAGCAGTGCCATTATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40014 366 -    177848 ggataaagaaaatgtggcacatagacaccatggaatactatgcagccatcaaaaaggatgagttcatgtcattcgcagggacatggatgaagctggaatccatcattctcagcaaactca-cacaggaacagaaaaccaagcatcacatgttttcactcctaagtgggagttgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgtcgagggatggggggctgcggaagggattgc-atta-ggagaaatTctcaccatctatgaatccctcatttcctcatcgggaaaaatgtacctgaaaatagcgcctgcctctgcatgttgtggtaaggaagcaatgccattatt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196457 357 +    417917 ggataaagaaaatgtggcacatagacaccacggaatactatgcagccatcaaaaaggatgagttcatgtc-tttgcagggacatggatgaagctgg-atccatcattctcagcaaactcaccacaggaaca-aaaccaaagcactgcatgttt--actcctaagtgggagttgaacaatgaaga-acaatgacacaggaaggggaacatca-acactgggggctgtgggggatgggggggctgcggaagggattgcgattagggagaaatTCTCACCAACTATGAA--CCTCATTTCCTCAT---GGAAAATGTACCTGAAAATAGTGCCTGTCTGTGTTTGTGGGGGTAAGGAAGCAGTGCCATTATT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e otoGar3.GL873584             197559   9 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=28873.000000
s hg38.chrX_KI270880v1_alt     138673 52 +    284869 tatgtCTCAT-------------GCTGTGGCTTGAGACTGTGTCTGTTTATGCTGCTCTGGTTTG
s panTro5.chrX                 292288 65 + 155549662 TATGTCTCATTTATGTCTCTCACGCTGTGGCTTGAGCCTGTGTCTGTTTATGCTGCTCTGGTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40380 65 -    177848 tatgtCTCATTTATGTCTCTCACACTGTGGCTTGAGCCTGTGTCTGTTTATGCTGCTCTGGTTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196814 64 +    417917 TGTGTCTCATTTATGTCTCTCACGCTGTGGCTTGAGCCTGTGTCTGTTT-TGCTGCTGTGGTTTG
i gorGor5.CYUI01015925v1       C 0 I 103
s otoGar3.GL873584             197568 49 +  11138919 -------------TGTTCCTCATGCTTCAGCTCCAG---GTGTATATGTTCTTTGCTCATGTCTG
i otoGar3.GL873584             I 9 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=16895.000000
s hg38.chrX_KI270880v1_alt     138725 74 +    284869 TGGTGGAGGCTGCCGTCTGTCAGCCTCTGCACCTGCCGTCTGTCAGCCTCTGCACCTGCTCTGAAGTTTTCCTC--
s panTro5.chrX                 292353 51 + 155549662 TGGTGGAGGCTGCCGTCTGTCAGCCTCTGCACCTGC-----------------------TCTAAAGTTTTCCTC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40445 74 -    177848 TGGTGGAGGCTGCCATCTGTCAGCCTCTGCACCTGCCATCTGTCAGCCTCTGCACCTGCTCTGAAGTTTTCCTC--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             197617 48 +  11138919 CTGTTGGGGCTGCTGTCTGTCGGCCCCT-CACCTGC-----------------------CCTGG----TTCCTCCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       196878 103 +    417917 I

a score=5620.000000
s hg38.chrX_KI270880v1_alt     138799 41 +    284869 TCGGTGGTACCCACCCATCATCCTGCTGCCCTTGAGTTCCC
s panTro5.chrX                 292404 41 + 155549662 TCGGTGGTACCCACCCATCATCCTGCTGCCCTTGAGTTCCC
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             197665 40 +  11138919 CCTGTGCTGTTCACCT-CCCTCCCACTGGCGCTGAACCCCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             191523 1157 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       196878 103 +    417917 I
e panPan2.chrUn_NW_014024190v1  40519  0 -    177848 C

a score=22685.000000
s hg38.chrX_KI270880v1_alt     138840 104 +    284869 AGGAGCCCACAGGAGCTGCACTTTCTCCAGGCCTTTTGCCGGTGGAGCTGCCTCTTGGATTGTGCGTCTCCATCCgatgcactctgttttcatgtgaaaatcca
s panTro5.chrX                 292445 104 + 155549662 AGGAGCCCACAGGAGCTGCACTTTCTCCAGGCCTTTTGCCGGTGGAGCTGCCTCTTGGATTGTGCGTCTCCATCCgatgcactctgttttcgtgtgaaaatcca
i panTro5.chrX                 C 0 C 0
s saiBol1.JH378345             192680  74 +    465904 AGAAGCTCACGGGAGCTGCACTTTCTCCAGAGATTTGGGGGGTCGGGCTGC------------------------------CTCTGTTTTCCTGAAAAAATCCA
i saiBol1.JH378345             I 1157 C 0
s otoGar3.GL873584             197705 103 +  11138919 GGGAACCCCCA-CAACCCCCCTTTCTGCTGGCCTTTGGCTGCCACAGCTGCTGCTTGGATGGTGCCTCTTGCTCAGCTGTGCTCAGTGTTGTTATAAAGACCCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       196878 103 +    417917 I
e panPan2.chrUn_NW_014024190v1  40519   0 -    177848 C

a score=2441.000000
s hg38.chrX_KI270880v1_alt     138944 7 +    284869 tgggaat
s panTro5.chrX                 292549 7 + 155549662 tgggaat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40519 7 -    177848 TGGGAAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s saiBol1.JH378345             192754 7 +    465904 TGGGAGG
i saiBol1.JH378345             C 0 I 25
s otoGar3.GL873584             197808 6 +  11138919 CAGGAA-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188 0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       196878 103 +    417917 I

a score=312029.000000
s hg38.chrX_KI270880v1_alt     138951 395 +    284869 aaaaaggctcttttcgtgctgaaaaatt--gagcccaggggttcagcCAGCAGAGGACTCTGTGGGTATAAATATGAATGGAGAGGATTCTAAATATATAGCAGAGCAGAAGTCAGATG-TTTGTGGAGAGGTGAAACGGCCTGGCCAGGTTCTTGGAACTTTAGAAATGAGGATGGCTTCCGGGGGAACTGGGGAGCGACCgttctcaactggggatgaacatgcaccccgacggacactcggcactgtctgggg-cggttctgggtgtggtaactgggaggggggtgctcctggcacctggtttgtggagcccggggatgctgctcaccaccttacagtgaccacagagaatcctccagccccaaatgtcagcagaggtgagg-ctgagagacactAT
s panTro5.chrX                 292556 395 + 155549662 aaaaaggctctttttgtgctgaaaaatt--gagcccaggggttcagcCAGCAGAGGACTCTGTGGGTATAAATATGAATGGAGAGGATTCTAAATATATAGCAGAGCAGAAGTCAGATG-TCTGTGGAGAGGTGAAACGGCCTGGCCAGGTTCTTGGAGCTTTAGAAATGAGGATGGCTTCCGGGGGAATTGGGGAGCGACCgttctcaagcggggatgaacatgcaccccgacggacacttggcactgtctgggg-cggttctgggtgttgtaactgggaggggggtgctcctggcacctggtttgtggagcccggggatgctgctcaccaccttacagtgaccacagagaatcctccagccccaaatgtcagcagaggtgagg-ctgagagacactAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40526 394 -    177848 AAAAAGGCTCTTTTTGTGCTGAAAAATT--GAGCCCAGGGGTTCAGCCAGCAGAGGACTCTGTGGGTATAAATATGAATGGAGAGGATTCTAAATATATAGCAGAGCAGAAGTCAGATG-TTTGTGGAGAGGTGAAACGGCCTGGCCCTGTTCTTGGAACTTTAGAAATGAGGATGGCTTCCGGGGGATTTGGGGAGCGACCgttctcaagcggggatgagcatgcaccccggcggacacttggaactgtctgggg-cgtttctgggtgttgtaactggga-gggggtgctcctggcacctggtctgtggagcctggggatgctgctcagctccttacagtgaccacagagaaccctccagccccaaatgtcagcagaggtgagg-ctgagagacactAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       196981 382 +    417917 AAAAAGGCTCTTTTTGTGCTG-AAAATT--GAGCCCA-GGGTTCAGCCAGCAGAGGACTCTGTGGGTAT-AATATGAATGGAGAGGATTCTAAATATATAGCAGAGCAGAAGTCAGATGTTTTGTGGAGAGGTGAAACGG-CTGGCCAGGTTCTTGGAACTTTAGAAATGAGGATG--TTCCGGGGGATTTGGGGAGCGACggttctcaaggggggatgagcatgcaccccggcggacactc-gcactgtcgggg---tgttctgggtgttgtaactggga-gggggtgct-ctggcacctggtttgtggagccc-gggatgctgctcagca-cttaca-tgacc-cagagaaccctccagccccaaatgtcagcagaggtgaggtctgagagacactAT
i gorGor5.CYUI01015925v1       I 103 I 1496
s saiBol1.JH378345             192786 365 +    465904 aaaacCATTATTTTTGTGCTGAAAACTTGAGAGTCCAGTGGTTCAGCCAGCAGAGGACTCTGTGGGTACAAATATGGAAGGAGAGGGTTGTCACCGTGAGGCAGAGCGGGACTCAGACA-------------CGAAACCACCTCGCCGGGTTCTGGGAACGTTAGAAATGGGGATGA-GTCCAGGGGATTTGGGGTACG-------------GGGGAAG---CTGTACCGTGTCGGCTGCTCAGCAGAGTCTGGGG-CGGTTCTGGGCATGGGAATAGGGGGCCGGGGGCTCCTGGCACCAGGTCCCTGG-GCCTGGGGACGCT-CTCAGCTCCTTACAGGGACCACAGAGAATCCTCCGGCCCCAAATCTCACCCCAGTTGAGT-CTGAGAGACTGTA-
i saiBol1.JH378345             I 25 C 0
s otoGar3.GL873584             197814 383 +  11138919 AAAAAGAC----TTTATGTTGAAAAATC--TAGTCCAGGAGTTCAGCCAGTAGAGGACTCTGTGGGTATAAATATAAATTTAGAGTATTCTAAGTACACAGCAGAGTGGGAGGCACATG-CTGCCGGTGACACAAAACAGGTTTTTCAGGTTCTTGGAATGCTGGAAATGAGAAATACATTCAGGT--TTTGGGGAGATTTATttctcagctggggatgactctgctccctgggagatactctatgatttctggagacatttttgggtgtcaaaattgggaagggggtgctgccagcatctggcgggtgggacccagggacgctgctccacaccccacagtg--cacacagagtcccccgtccccaaatgtcagcagggctgaag-ttgacaacc-----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=23056.000000
s hg38.chrX_KI270880v1_alt     139346 116 +    284869 CTGAGGGACtctatc----atctgtcaatcaatcaatcaatctctcaatctattatgcatctatctatctatctatctatctatctacccacctatcatctatcatttatctatgtatct
s panTro5.chrX                 292951 116 + 155549662 CTGAGGGACtctatctatcatctgtcaatcaatcaatcaatctctcaatctattatg----tatctatctatctatctatctatctacccacctatcatctatcatctatctatgtatct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  40920  82 -    177848 CTGAGGGATtccatctatcatctgtcaatcaatcaatcaatctctcaatctattatg----tatctatctatc-atctatctatcta---------------------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s saiBol1.JH378345             193151  75 +    465904 -------------TCTACCATCTGtcagtcaatcaatcaatcaatcaatc------------------------aTCCATCCGTCCA--------TTATCCATCATCTATCTATATATct
i saiBol1.JH378345             C 0 I 178
s otoGar3.GL873584             198197  64 +  11138919 -----------------ccACCTGTGCATGGG------AAATTCtctacc-----------tgtctatctatctatctatctatttatcaatcgatca----------------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I

a score=11950.000000
s hg38.chrX_KI270880v1_alt     139462 41 +    284869 atgtatctatgtatctatctacctatcatctatctatc-----atc
s panTro5.chrX                 293067 46 + 155549662 atgtatctatctatctatccacctatcatctatgtatctatgtatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  41002 35 -    177848 ------ttatctatctatccacgtatcatctatctata-----atc
i panPan2.chrUn_NW_014024190v1 C 0 I 24
s otoGar3.GL873584             198261 40 +  11138919 atctatctatc-atctatctatctatcatctatcaatc-----ttc
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I

a score=5844.000000
s hg38.chrX_KI270880v1_alt     139503 79 +    284869 tatctatgtatctatctatgtatctattatctatctatccacctatcatctatctataatctctctctctcccaaccat
s panTro5.chrX                 293113 79 + 155549662 tatgtatctatctatctatgtatctattatctatctatccacctatcatctatctataatctctctctctcccaaccat
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             198301 22 +  11138919 --------------------tatctaccatctatctatctat-------------------------------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I
e panPan2.chrUn_NW_014024190v1  41037 24 -    177848 I

a score=94785.000000
s hg38.chrX_KI270880v1_alt     139582 318 +    284869 ccatctatccatccatccatccatctatccatctatccattatctatcatacat---ctatctattcatccatccatcatctatcatctctatcatctataaatcaatttatccatc---atctgtcattcatccatccatcacccatctttattatctatcatctatctatccatctatcattcatctatcatctacccatccattacctatctatctctatcatatataaatcaatcaatctatcatctatcatccaccaatctacctatttatctagatctgcctatctacct---ttatctattatctatcatcaatctttat
s panTro5.chrX                 293192 310 + 155549662 ccatctatccatccatccatccatctatccat--------tatctatcatacat---ctatctattcatccatccatcatctatcatctctatcatctataaatcaatttatccatc---atctgtcattcatccatccatcacccatctttattatctatcatctatctatccatctatcattcatctatcatctacccatccattacctatctatctctatcatatataaatcaatcaatctatcatctatcatccaccaatctacctatttatctatatctgtctatctacct---ttatctattttctatcatcaatctttat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  41061 313 -    177848 ccatccatccatccatctatccatctatccat--------tatctatcatgcat---ctatctattcatccatcatctatctatcatctctatcatctataaatcaatttatccatc---atctatcattcatccatccatcacccatctttattatctatcatctatctatccatctatcattcatctatcatctacccatccattacctatctatctctgtcatatataaatcaatctatcatctatctatcatccatcaatctacctatttatctatagctatctatctacctttattatctatcatctatcatcaatctttat
i panPan2.chrUn_NW_014024190v1 I 24 I 592
s otoGar3.GL873584             198323 237 +  11138919 --atcgacccat--atctgtccatctatccat--------tgtctattatctattgatcatctatttaccaatctatcatttatc--ctctgtcatccatctatttatgtatttatccttatttatcaaccatttatttatcg---------attatctgtcatttatcca-----ctatcaccgatccatcatctgtccatccattctctattcaccc-------------------------atcatctatcatgtatcGTTC---------------ACCTACCAAGCAACTG---TTA-------------ATCAAT------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I

a score=31733.000000
s hg38.chrX_KI270880v1_alt     139900 287 +    284869 tatctatctatcatctatctacagatctatttattgacccattatctatctatcatctatctacctatctatcta----atctgtgcttttcagctgctgccgattgtctcctctgaggacactttgtcagtctctggggacacttttggttgtctggattgtggagtgagggtgcttctggtcgctggtgggtgaagcccagggacactgctcaacaccctacagtgcacagatcagccccaccagagagaatcgtccagtcccatgtgtcggaagtaccagggctgaaa
s panTro5.chrX                 293502 252 + 155549662 --------------------------------------ctattatctatctatcatctatctacctatctatctatctaatctGTg-ttttcagctgctgctgattgtctcctctgaggacactttgtcagtctctggggacacttttggttgtctggattgtggagtgagggtgcttctggtcactggtgggtgaagcccagggacgctgctcaacaccctacagtgcacagatcagccccaccagagagaatcgtccagtcccatgtgtcggaagtaccagggctgaaa
i panTro5.chrX                 C 0 C 0
s otoGar3.GL873584             198560 249 +  11138919 TATCTGTTTATCTTCTATC-------------------------TCTATCAATCAATCATCTATCTCTCCATCCA-GTGGTCTGTG-----AAGATG--AATgattct-gcctccaggcacac-ttggcgatgtctggacatgttttctggtgtcataattgggaa--ggagatgatgctggcttgtggtgactggggcccagggacgctgctcagcaccc-aaagggcacaggaca-ccccaccacagag--ccctccag-cacagacgttggtagtgctgaggctgaga
i otoGar3.GL873584             C 0 I 4057
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I
e panPan2.chrUn_NW_014024190v1  41374 592 -    177848 I

a score=26432.000000
s hg38.chrX_KI270880v1_alt     140187 308 +    284869 gacactgCCTGAGGCTGAGACAATCtctgtttgtctatctatcacctatcagtgatctatcagtcaattatctacctattaactgtctatatcaattatctgtcatacctatcaatcagctatcattaatcatctgtctatatcaattatccatcatacctatcaatcaactatctatcatcaatcatctatctatactaattatccatcatacatatcaatcaactaacaatcatcaatcatcaagcatctatatcaattatccatcaaacctatcaatcatatat----catcaatcatctatctgtgtg
s panTro5.chrX                 293754 308 + 155549662 gacactgCCTGAGGCTGAGACAATCtctgtttgtctatctatcacctatcagtgatctatcagtcaattatctacctattaactgtctatatcaattatctgtcatacctatcagctatcaatcattaatcatctgtctatatcaattatccatcatacctatcaatcaactatc----atcaatcatctatctatactaattatccatcatacatatcaatcaactaacaatcatcaatcatcaagcatctatatcaattatccatcaaacctatcaatcgtatattaatcatcaatcatctatctgtatg
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I
e panPan2.chrUn_NW_014024190v1  41374 592 -    177848 I

a score=115035.000000
s hg38.chrX_KI270880v1_alt     140495 569 +    284869 aattatccatcatacctatcaatcagctatc----aatcgtcaatcatatatc------aattatccatcatacctatcaatcaaccatct---atcaatcatcaatctatatcaattatctgtcatacctatcaatc----atcaatcatc---tatctatatcaattatccatcatacttatca--------------atcaaccatctatctatatgaattatccatcatatctatcaatcaactacctatcatcaatc---tatatcaattatccgtcacacctttcgatcagctatctatcaatcatcaatcatctatatcaattatccatcaaacctatcaatcaactatttgtcaattatcaatcatctatatcaattatgcatcatacctatcaactatc-atcaatcatctatctatatgaattatccatcatacctatcaatcaactacctatca--------------atctatatcaattatccatcacacctatcaatcaactatttatcaattatca--------tctatatcaattatgcatcatacctatcaactatcatcaatcatctatctatatcaattatccatcatacctatcaatcagctatcaatc
s panTro5.chrX                 294062 563 + 155549662 aattatccatcatacctatcaatcagctatctatcaatcgtcaatcatatatctatatcaattatccatcatacctatcaatcaaccatct---atcaatcatcaatc---atc---tatctgtcatacctatcaatc----atca----tc---tatctatatcaattatccatcatacttatca--------------atcaaccatctatctatatgaattatccatcatatctatcaatcaactacctatcatcaatc---tatatcaattatccgtcacacctatcgatcagctatctatca----tcaatcatctatatcaattatccatcacacgtatcaatcaactatttgtcaattatcaatcatctatatcaattatccatcatacttatcaa-------tcaaccatctatctatatgaattatccat---acctatcaatcaactacctatca-----------tcaatctatatcaattatccatcacacctatcaa----ctatttatcaattatcaatcatctatttatatcaattatgcatcatacctatcaactatcatcaatcatctatctatatcaattatccatcatacctatcaatcagctatcaatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  41966 607 -    177848 aattatctgtcatacctatcaatcagctatc----aatcattaatcatctgtctatatcaattatccatcatacctatcaatcaactatctatcatcaatcatctatctatactaattatccatcatacatatcaatcaactatcaatcatcaatcatctatatcaattatccatcaaacctatcaatcatatatcaatcatcaatcatctatctgtgtgaattatccatcatacatatcaatcaactatcaatcgtcaatcatatatatcaattatccatcatacctatcaatcaaccatctatcaatcatcaatcatctatatcaattatccatcatacttatcaatcaaccatct--------------atctatatgaattatccatcatatcaatcaactacctatcatcaatctatctatatcaattatccgtcacacctatcaatcagctatctatcaatcatcaatcatctatctatatcaattatccatcacacccatcaatcaactatttatcaattatcaatcatctatttatatgaattatgcatcatacctatcaactatcatcaatcatctatctatatcaattatccatcatacctatcaatcagct----atc
i panPan2.chrUn_NW_014024190v1 I 592 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I
e gorGor5.CYUI01015925v1       197363 1496 +    417917 I

a score=95451.000000
s hg38.chrX_KI270880v1_alt     141064 208 +    284869 atcaatccttgatctatatcatttatgcatcaatcatcaatcatctgtatcaattatcaatcatctatt-tacctatcaaatcaactatgtatcatctttcatcatatctatcaattgtccatcagtcagttatctacctgtctatTCAATGGTTTGCAAACAGGATGA--TTTTCTTTTTCTGAGAAGAGGTCTCAAAACTTT-GTTTTGg
s panTro5.chrX                 294625 208 + 155549662 atcaatccttgatctatatcatttatgcatcaatcatcagtcatctgtatcaattatcaatcatctatt-tacctatcaaatcaactatctatcatctttcatcatatctatcaattgtccatcagtcagttatctacctgtctatTCAATGGTTTGCAAACAGGATGA--TTTTCTTTTTTTGAGAAGAGGTCTCAAAACTTT-GTTTTGg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  42573 203 -    177848 atcaatccttgatctatatcatttatgcatcaatcatcaatcatctatatcaattatcaatcatctatt-tacctatc-agtcaacaatctatcatctatcatca----tatcaattatccatcagtcagttatctacctgtctatTCAATGGTTTGCAAACTGGATGA--TTTTCTTTTTTTGAGAAGAGGTCTCAAAACTTT-GTTTTGg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       198859 203 +    417917 atcaatccttgatctatat-atttatgcatcaatcatcaatcatct-tat-aattatcaatcatctattctacctatcaaatcaac----tatcatctttcatcatatctat--attgtccatcagtcagttatcTACCTGTCTATTCAATGGTTTGCAAACAGGATGAATTTTTCTTTTTTTGAGAAGAGGTCTCAAAACTTTGGTTTTGg
i gorGor5.CYUI01015925v1       I 1496 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=11706.000000
s hg38.chrX_KI270880v1_alt     141272 14 +    284869 gctgggcacggtgg
s panTro5.chrX                 294833 14 + 155549662 gctgggcacggtgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  42776 14 -    177848 gctgggcacggtgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       199062 14 +    417917 gctgggcacggtgg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020          530 14 -     71016 gccaggcgtggtgg
i macFas5.chrUn_KE146020       N 0 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e cerAty1.NW_012001098v1       161365 4840 -   1025902 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=11332.000000
s hg38.chrX_KI270880v1_alt     141286 12 +    284869 ctcacacctgta
s panTro5.chrX                 294847 12 + 155549662 ctcacgcctgta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  42790 12 -    177848 ctcacgcctgta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       199076 11 +    417917 ctcacg-ctgtc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020          544 12 -     71016 ctcatgcctgta
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1       166205 12 -   1025902 ctcacacctgtc
i cerAty1.NW_012001098v1       I 4840 C 0
e manLeu1.NW_012108508v1        88059 3483 -    350446 I
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e colAng1.NW_012115411v1       252188  0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=397716.000000
s hg38.chrX_KI270880v1_alt     141298 261 +    284869 atcccag------cactgtgggaggccaaggc-ggaccgatcacctgaggtctggagttcgaggccagcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaactagctgggcgtggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggatag-ttgcttgaacctgggaggcggaggttg--cagtgagccgagattttgcactccagcctgggcaacaagtgtgaaaattcgtctcaaa----------aattaaaa
s panTro5.chrX                 294859 261 + 155549662 atcccag------cactttgggaggccaaggt-ggaccgatcacctgaggtctggagttcgagaccagcctggccaacatggtgaaaccctgtctgtactacaaatac-aaaaactagctgggcgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggtgggagaa-ttgcttgaacctgggaggcggaagttg--cagtgagccgagattttgcactccagcctgggcaacaagtgtgaaacttcatctcaaa----------aattaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1  42802 261 -    177848 atcccag------cactttgggaggccaaggc-ggaccgatcacctgaggtctggagttcgagaccagcctggccaacatggtgaaaccctgtctctactacaaatac-aaaaactagctgggcgtggtggcaggtgcctgtaatcccagctactggggaggctgaggtgggagaa-ttgcttgaacctgggaggcggaagttg--cagtgagctgagattttgcactccagcctgggcaacaagtgtgaaaattcgtctcaaa----------agttaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       199087 260 +    417917 at-ccag------c-ctttgggaggccaaggcgggaccgatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaactagctgggcgtggtggcaggtg-ctgtaatcacag-tactcaggaggctgaggtgggagaatttgcttgaa-ctgggaggcggaagtctgccagtgagctgagattttgcacctcagcctgggcaacaagtgtgaaaattcgtctcgaa----------aatt-aaa
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020          556 277 -     71016 gtcccagctactccactttgggaggccaaagc-aggcagatcacttttggtcaggagttcaagaccagcctggccaagatggtaaaatcccatctctactaaaaatac-aaaaattagccgggcgcggtggcaggtgcctgtaatcccagctactcgggaggctgaagcaggagaa-tcgcttgaacccgggaggcggaggttg--cagtgagcccagattttgcactccagcctgggggacaagagtgaaacgtcatctcaaaataaatgaataaataaaa
i macFas5.chrUn_KE146020       C 0 I 26
s cerAty1.NW_012001098v1       166217 271 -   1025902 atcccag------cactttgggaggccgaggc-gggtggatcacctgaggtcgggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaattagctgggcgcggtggcaggtgcctgtcatcccagctactcgggaggccgaggcaggagaa-tgccgtgaacccgggaggcggaggttg--cggtgagccgagattttgcactccggcctgggcgacaagagtgaaacttcatctcaaaataaatgaataaataaaa
i cerAty1.NW_012001098v1       C 0 I 27
s manLeu1.NW_012108508v1        91542 271 -    350446 atcccag------cactttgggaggctgaggt-gggtggatcacctgaggtcaggagttcgacaccagcctgaccaacagggtgaaaccccatctctactaaaaatat-aaaaattagctgggcacggtggcaggtgcctgtcatcccagctacttgggaggccgaggcaggagaa-tgccgtgaatacaggaggcggaggttg--cagtgagccgagattttgcactccagcctgggggacaagagtgaaacttcatctcaaaataaatgaataaataaaa
i manLeu1.NW_012108508v1       I 3483 I 57
e saiBol1.JH378345             193226 178 +    465904 I
e otoGar3.GL873584             198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1     138974 1688 -    811265 I
e colAng1.NW_012115411v1       252188   0 +   1230721 C
e macNem1.NW_012017243v1       231988 20205 +  25972781 I

a score=533151.000000
s hg38.chrX_KI270880v1_alt        141559 345 +    284869 ataaaaaataaaaTCTTCATTTTGTCCTGAGTTGAAACTGAAGGGCC-GGCATCGTGCTTCCCAAAGATGTCCTGTtttatgctggaggtggcagtttcttgtatttgcagatatgtgtgaaaaaccagaccttggcaatgact-ttga-caataggcggtaaataactgccagatgcttagcgttccaataatggaatgcta-ggcatcgatagGTTTA-AGCCCCCTATGATTTTAGCACTGATAT-GGAA-----------------GTACGGGA--TTCCTTCATGGAG-AAAATAAGACACTGG-TTTTGCTTTCTGttttcttttctttctttttttttttt-gagaa-ggagtcttgctcttgtacc
s panTro5.chrX                    295120 346 + 155549662 ataaaaaatgaaaTCCTCATTTTGTCCTGAGGTGAAACTGAAGGGCT-GGCATCGTGCTTCCCAAAGATGTCCTGTtttgtgctggaggtggcagtttcttgtatttgcagatatgtgtgaaaaaccagaccttggcaatgacc-ttga-caataggcggtaaataactcccagatgcttagcattccaataatggaacgcta-ggcatcgatagGTTTA-AGCCCCCTATGATTTTAGCACTGATAT-GGAA-----------------GTACGGGA--TTCCTTCATGGAG-AAAATAAGACACTGG-TTTTGCTTTCTGttttcttttctttctttttttttttttgagaa-ggagtcttgctcttgtacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43063 341 -    177848 ataaaaaataaaaTCTTCATTTTGTCCTGAGTTGAAACTGAAGGGCC-GGCATCGTGCTTCCCAAAGATGTCCTGTtttatgctggaggtggcagtttcttgtatttgcagatatgtgtgaaaaaccagaccttggcaatgacc-ttga-caataggcggtaaataactcccagatgcttagcgttccaataatggaacgcta-ggcatcgatagGTTTA-AGCCCCCTATGATTTTAGCACTGATAT-GGAA-----------------GTACGGGA--TTCCTTCATGGAG-AGAATAAGACACTGG-TTTTGCtttctgttttcttttctttctttttttt-----gagaa-ggagtcttgctcttgtacc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          199347 343 +    417917 ataaaaaataaaTCTTCAATTTTGTCCTGAGTTGAAACTGAAGGGCAGGGCATCGTGCTTCCCAAAGATGTCCTGTtttatgctggaggtggcagtttcttgtatttgcagatatgtgtgaaaaaccag--cttggcaatgacctttga-caataggcggtaaataactcccagatgcttagcgttccaataatagaacgctagggcatcgatagGTTTATAGCCCCCTATGATTTTAGCACTGATAT-GGAA-----------------GTATGGGGATTTCCTTCATGGAG-AAAATAAGACACTGGTttttgctttctcttttcttttttttttttt---------gagaatggagtcttgctcttgtacc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143265384 275 + 180051392 ataaaaaataaaACCTTCGTTTTGTCCTGAGTTGAAACTGAACGGTC----------------------------------------------------------TTGCAGATACGTgtgaaaacccagaccttggccatgacc-ttgagcaggaggaggtaaatgactcccagaggctcagcgttccaataatggaacacta-ggcatcaatggGTTTA-AGCCCACTATGCGTTTAGCAGTGATACGGGAA-----------------GGACAGGA--CCCCTTCATGGAGAAAAATAGCACATTGG-ttttgttttctgttttcctttttt---------------gagat-ggagtctcgctct-gtcg-
i rheMac8.chr6                 N 0 C 0
s macFas5.chrUn_KE146020             859 292 -     71016 ataaaaaataaaACCTTCGTTTTGTCCTGAGTTGAAACTGAACGGCC----------------------------------------------------------TTGCAGATACGTgtgaaaacccagaccttggccatgacc-ttgatcaggaggaggtaaatgactcccagaggctcagcgttccaataatggaacacta-ggcatcaatggGTTTA-AGCCCACTATGCGTTTAGCAGTGATACGGGAAGGACAGGACCCCTTCATGGACAGGA--CCCCTTCATGGAGAAAAATAGCACATTGG-ttttgttttctgttttcctttttt---------------gagat-ggagtctcgctct-gtcg-
i macFas5.chrUn_KE146020       I 26 C 0
s cerAty1.NW_012001098v1          166515 276 -   1025902 ATGAAAAATAAAACCTTCGTTTTGTCCTGAGTTGAAACTGAACGGCC----------------------------------------------------------TTGCAGATatgtgtgaaaacccagaccttggccatgacc-ttgagcagggggaggtaagtgactcccagaggctcagcgttccaataatggaacgcta-ggcatcaatggGTTTA-AGCCCGCTATGCGTTTAGCAGTGATACGGGAA-----------------GGACAGGA--CCCCTTCTTGGAGAAAAATAACACATTGG-ttttgttttctgttttcttttttt---------------gagat-ggagtctcgctctagtcc-
i cerAty1.NW_012001098v1       I 27 C 0
s manLeu1.NW_012108508v1           91870 276 -    350446 atgaaaaataaaACCTTCGTTTTGTCCTGAGTTGAAACTGAACGGCC----------------------------------------------------------TTGCAGATatgtgtgaaaacccagaccttggccatgacc-ttgagcaggaggaggtaaatgactcccagaggctcagcgttccaataatggaacgcta-ggcattattggGTTTA-AGCCCACTATGCGTTTAGCAGTGATACGGGAA-----------------GGACAGGA--CCCCTTCATGGAGAAAAATAACACATTGG-ttttgttttctgttttcttttttt---------------gagat-ggagtctcgctctagtcc-
i manLeu1.NW_012108508v1       I 57 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e colAng1.NW_012115411v1          252188   0 +   1230721 C
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=696880.000000
s hg38.chrX_KI270880v1_alt        141904 252 +    284869 cccaggctggagtgcaatggtactatctcggc-tcactgcaacctccgcctcccaggttcaagtgattctc---------------------atgcctcaacctccaaagtagctggggttacaggtgcac-gccatatctgtgcaccatgctggccaggctggtctcgaactcctgaccgcaggttacctgccc-----------------------------------gAGCCACCACGCCTGGCCGCAAACACCGCATTTCAAATATACTGAGTCCTTC-AGCTC-GGAGGTCAGAAATGGCCAAGGGC
s panTro5.chrX                    295466 252 + 155549662 cccaggctggagtgcaatggtactatctcggc-tcactgcaacctccgcctcccgggttcaagtgattctc---------------------atgcctcaacctccaaagtagctggggttacaggtgcat-gccatacctgtgcaccatgctggccaggctggtctcgaactcctgaccgcaggtgatctgccc-----------------------------------gAGCCACCACGCCTGGCCACAAACACCCCATTTCAAATATACTGAGTGCTTC-AGCTC-GGAGGTCAGAAATGGCCAAGGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43404 250 -    177848 cccaggctggagtgcaatggtactatctcggc-tcactgcaacctccgcctccc-ggttcaagtgattctc---------------------atgcctcaacctccaaagtagctggggttacaggtgcat-gccatacctgtgcaccatgctggccaggctggtctcgaactcctgaccgcaggtgatctgcct-----------------------------------gAGCCACCACGCCTGGCTGCAAACACCCCATTTCAAATATACTGAGT-CTTC-AGCTT-GGAGGTCAGAAATGGCCAAGGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          199690 251 +    417917 cccaggctggagtgcaatggtactatctcggcttcactg-aacctccacctgccgggttcaagcgattctc---------------------acgcctcaacctccaaagtagctggggttacaggtgcatcgccatacctgtgc-ccatgctggccaggcctggttcgaactcctgaccgcaggtgatctgcct-----------------------------------gAGCCACCACGCCTGGCCACAAA-ACCCCATTTCAAATATACTGAGTCTTTC-AGCTG-GGAGGTCAGAAATGGCCAAGGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143265659 288 + 180051392 cccaggccggagtgcaatggtacaatctcggc-tcactgcaacctccgcctcccgggttcaagcgattctc---------------------ctgcctcagcctcctgagtagctggggttacaggtgcgc-gccgcacctgtgccccgtgctggtcaggctggtctcgaactcctgacctcacgtgatctgcccacgtcaggctcccaaagttctgggattacaggcgtgaaccaccgcacctggccACAAACACCTGCTTTCAAATATACTGAGTCTTTC-AGCTCAGGAGGTCAGAAATGGCCAAAGGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            1151 309 -     71016 cccaggccggagtgcaatggtacaatctcggc-tcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgcctcagcctcctgagtagctggggttacaggtgcgc-gccgcacctgtgccccgtgctggtcaggctggtctcgaactcctgacctcacgtgatctgcccacgtcaggctcccaaagttctgggattacaggcgtgaaccaccgcacctggccACAAACACCTGCTTTCAAATATACTGAGTCTTTC-AGCTCAGGAGGTCAGAAATGGCCAAAGGC
i macFas5.chrUn_KE146020       C 0 I 321
s cerAty1.NW_012001098v1          166791 282 -   1025902 cccaggctggagtgcaatggcacagtctcggc-tcactgcaacctccgcctcccgggttcaagcgattctc---------------------ctgcctcagcctcctgagtagctgggatgacaggtgcac-gccgtacctgtgccccgtgctggtcaggctggtctcgaactcctgacctcaggtgatctgcccacctctggctcccaaagttctaggattacaggcgtgggccaccgcacctggc------cACCTCCTTTCAAATATAGTGAGTCTTTC-AACTTAGGAGGTCAGAAATGGCCAAGGGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           92146 282 -    350446 cccaggccggagtgcaatggtacaatctcggc-tcactgccacctccgcctcccgggttcaagcgattctc---------------------ctgcctcagcctcctgagtagctgggatgacaggtgcac-gccgtacctgtgccccgtgctggtcaggctggtctcgaactcctgacctcacgtgatctgcccacctctggctcccaaagttctaggattacaggcgtgggccaccgcacctggc------cACCTCCTTTCAAATATACTGAGTCTTTC-AACTTAGGAGGTCAGAAATGGCCAAGGGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          252188 289 +   1230721 cccaggctggagtgcaaggatacaatctcggc-tcactgcaacctccgcctcccgggttcaagcgattctc---------------------ctgcctcaacctccaaagtagctggggttacaggtgcgc-gccgtacctgtgcaccgtgctggtcagactggtctcgaactcctgacctgaggtgatctgcccacctcaggctcccaaagttctaggattacaggcgtgagccgccacgcctggccGCAAACACCCCCTTTCAAATATACTGAGTCTTTCAAACTCAGGAGGTCAGAAATGGCCAAGGGC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=321766.000000
s hg38.chrX_KI270880v1_alt        142156 131 +    284869 ggccgggccggtggctca-cgcctgcaatcctgcaatcctagcattttgagaggccaaggtgggaggattgcttgacgccaaggagtttaagaccagcctgggcaacatagcaagacccc-g---atttctacaca
s panTro5.chrX                    295718 130 + 155549662 ggccgggccggtggctca-cgcctgcaatcctgcaatcctagcattttgagaggccaaggtgggaggattgcttgactccg-ggagttcaagaccagcctgggcaacatagcaagacccc-c---atttctacaca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43654 130 -    177848 ggccgggccggtggctca-cgcctgcaatcctgcagtcctagcattttgagaggccagggtgggaggattgcttgactccg-ggaggtcaagaccagcctgggcaacatagcaagacccc-c---atttctacaca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          199941 130 +    417917 ggctgggccggtggctcaccgcctgcaatcctgca-tcctagcattttgagaggctgaggtgggaggattgcttgacgccg-ggagttcaagaccagcctgggcaacatagcaagacccc-c---atttctacaca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143265947 131 + 180051392 ggcagggttggtggctca-cgcctgcactcctgcaatcccagcattgtgagaagccaaggtgggaggatcgcttgaggcca-ggagtttaagaccagcctgggcaacatagcaagaccccac---atttctacaca
i rheMac8.chr6                 C 0 I 22
s macFas5.chrUn_KE146020            1781 121 -     71016 gccaggtgcgttgactca-ca--------cctgtcatcccagcactttgggaggccgaggcgggtggatcacctgaggtcg-agagatcgagaccagcctggccagcaaggcgaaaccc--c---gtctctactaa
i macFas5.chrUn_KE146020       I 321 C 0
s cerAty1.NW_012001098v1          167073 131 -   1025902 AGCAGGGTTGGTGGTTCA-CGCCTGcactcctgcaatcccagcattttgagaagccaaggtgacaggatcgcttgaggcca-ggagttcaagaccagcctgggcaacatagcaagaccccac---atttctacaca
i cerAty1.NW_012001098v1       C 0 I 437
s manLeu1.NW_012108508v1           92428 131 -    350446 AGCAGGGTTGGTGGTTCA-TGCCTGcactcctgcaatcccagcattttgagaagccaaggtgagaggatcgcttgaggcca-ggagttcaagaccagcctgggcaacatagcaagaccccac---atttctacaca
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          252477 134 +   1230721 GGCAGGGTTggtggctca-cgcctgcaatcctgcaatcccagcatttggagaagccaaggtgggaggatcgcttgaggcca-ggagttcaagatcagcctgggcaacatagcaagcccccccccaacttctacaca
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=2354.000000
s hg38.chrX_KI270880v1_alt        142287 20 +    284869 aaataaaaaaaaaa---------ttagtc
s panTro5.chrX                    295848 21 + 155549662 aaataaaaaaaaaaa--------ttagtc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43784 18 -    177848 aagtaaaaaaaa-----------ttagtc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200071 18 +    417917 aaataaaaaaaa-----------ttagtc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            1902 17 -     71016 aaatactaaaattagcc------------
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1           92559 15 -    350446 aaattaaaaaaaaaa--------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          252611 21 +   1230721 aaataaaaagaaaaa--aaaaat------
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e cerAty1.NW_012001098v1          167204 437 -   1025902 I
e rheMac8.chr6                 143266078 22 + 180051392 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=189706.000000
s hg38.chrX_KI270880v1_alt        142307 100 +    284869 aggcgtggtggctcacgtctgtagtcccag-acactgggaagtccgaggagggaggatcgcctgagtccaggcgtccgaggct-gcagtgagccatgattga
s panTro5.chrX                    295869 100 + 155549662 aggtgtggtggctcacgtctgtagtcccag-acactgggaagtccgaggagggaggattgcctgagtccaggcatccgaggct-gcagtgagccatgattga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43802 100 -    177848 aggcatggtggctcacgtctgtagtctcag-atactgggaagtctgaggagggaggatcgcctgagtccaggcgtccgaggct-gcagtgagccatgattga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200089 101 +    417917 aggcgtggtgg-tcacgtctgtagtcccagaatactgggaagtctgaagagggaggatctcctgagtccaggcgtccgaggctggcagtgagccatgattga
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266100 100 + 180051392 aggtgtggtggctcatgcctgtagtcccag-ctactgggaagactgaagagggaggatcgagtgagcccaggtgttcgaggct-gcagtgagccatgactga
i rheMac8.chr6                 I 22 I 315
s macFas5.chrUn_KE146020            1919 100 -     71016 aggcgtggtggcaggtgcctgtaatcccag-ctactcgggaggctgaggcagggcaatggcttcaatctgggaggcagaggtt-gcagtgagcggagactgt
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1           92574 100 -    350446 aggtgtggtggctcatgcctgtagtcccag-ctactgggaagactgaagagggaggatcgtgtgagcccaggtgttcgaggct-gcagtgagcaatgactga
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          252632 100 +   1230721 agctgtggtggctcatgcctgtagtcccag-ctactgggaagactgaggagggaggatcacatgagcccaggcgttcaaggct-gcagtgagccatgattga
i colAng1.NW_012115411v1       C 0 I 314
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e cerAty1.NW_012001098v1          167204 437 -   1025902 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=3755.000000
s hg38.chrX_KI270880v1_alt        142407 3 +    284869 gct
s panTro5.chrX                    295969 3 + 155549662 gct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43902 3 -    177848 gct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200190 3 +    417917 gct
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            2019 3 -     71016 gcc
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1           92674 3 -    350446 gct
i manLeu1.NW_012108508v1       C 0 I 6066
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e cerAty1.NW_012001098v1          167204 437 -   1025902 I
e colAng1.NW_012115411v1          252732 314 +   1230721 I
e rheMac8.chr6                 143266200 315 + 180051392 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=1386.000000
s hg38.chrX_KI270880v1_alt        142410 2 +    284869 ac
s panTro5.chrX                    295972 2 + 155549662 ac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43905 2 -    177848 ac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200193 2 +    417917 ac
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            2022 2 -     71016 at
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1           92677 6066 -    350446 I
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e cerAty1.NW_012001098v1          167204 437 -   1025902 I
e colAng1.NW_012115411v1          252732 314 +   1230721 I
e rheMac8.chr6                 143266200 315 + 180051392 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=136612.000000
s hg38.chrX_KI270880v1_alt        142412 59 +    284869 tgcactccagcctgggcaacagagccagaccctgtcttaaaaataaa-ataataatt-caa-
s panTro5.chrX                    295974 60 + 155549662 tgcactccagcctgggcaacagagccagaccctgtcttaaaaataag-ataataataataa-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43907 60 -    177848 tgcgctccagcctgggcaacagagccagaccctgtcttaaaaataag-ataataataataa-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200195 61 +    417917 tgcactccggcctgggcaacagagccagaccctgtcttaaaaataagaataataataataa-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266515 57 + 180051392 tgcactccagcctgggcaacagagcaagaccctgtcttaaaaa-aaa-taaaaaataaa---
i rheMac8.chr6                 I 315 I 1
s macFas5.chrUn_KE146020            2024 57 -     71016 tgcactccagcctgggcaacagagcaagaccctgtcttaaaaa-aaa-taaaataaaat---
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          167641 60 -   1025902 tgcactccagcccaggcaacagagcaagaccctgtcttaaaaa-aat-aaaataataataaa
i cerAty1.NW_012001098v1       I 437 C 0
s manLeu1.NW_012108508v1           98743 60 -    350446 tgcactccagcctgagcaacagagcaagaccctgtcttaaaaa-aat-aaaataataataaa
i manLeu1.NW_012108508v1       I 6066 C 0
s colAng1.NW_012115411v1          253046 60 +   1230721 tgcactccagcctgggcaacagagcaagactccgtcttaaaaa-aat-aaaataataataaa
i colAng1.NW_012115411v1       I 314 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I
e macNem1.NW_012017243v1          231988 20205 +  25972781 I

a score=560715.000000
s hg38.chrX_KI270880v1_alt        142471 163 +    284869 aaaaTAgg-ccaggcgcgtt-ggctcatgcctgtaatcccaggactttgggaggcagaggtgggcagatcacctgaggtcgggagttcaagaccagcctggctaacacggtgaac-ccccgtctctactaaaaatactaaaatcagctggg-cgtggtggcaggtgc
s panTro5.chrX                    296034 163 + 155549662 aaaaTAgg-ccaggcacatt-ggctcatgcctgtaatcccagcactttgggaggcagaggtgggcagatcacctgaggtcgggagttggagaccagcctggctaacacggtgaaa-ccccgtctctactaaaaatactaaaatcagccggg-cgtggtggcaggtgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     43967 163 -    177848 aaaaTAgg-ccaggcgcgtt-ggctcatgcctgtaatcccagcactttgggaggcagaggtgggcagatcacctgaggtcgggagttcgagaccggcctggctaacacggtgaaa-ccccgtctctactaaaaatactaaaatcagccggg-cgtggtggcaggttc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200256 165 +    417917 aaaaTAGGCccaggcgcattgggctcatgcctgtaatcccagcactttgggaggcagaggtgggcagatca-ctgaggt-gggagtttgagaccagcctggctaacacggtgaaatccccgtctctactgaaaatactaaaatcagctgggtcgtggtggcaggtgc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266573 161 + 180051392 aaaaTAgg-ccaggtgcgtt-aactcacacctgtcatcccagcactttgggagaccgaggtgggcggatca--tgaggtcaggagttcgagaccagcctggccagcaaggtgaag-cccagtctctgctaaaaatactaaaattagccggg-cgcggtggcaggtgc
i rheMac8.chr6                 I 1 C 0
s macFas5.chrUn_KE146020            2081 161 -     71016 aaaaTAgg-ccaggtgcgtt-aactcacacctgtcatcccagcactttgggagaccgaggtgggcggatca--tgaggtcaggagttcgagaccagcctggccaacgtggtgaag-cccagtctctgctaaaaatactaaaattagccggg-cgcggtggcaggtgc
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          252193 161 +  25972781 aaaatagg-ccaggtgcgtt-aactcacacctgtcatcccagcactttgggagaccgaggtgggcggatca--tgaggtcaggagttcgagaccagcctggccagcaaggtgaag-cccagtctctgctaaaaatactaaaattagccggg-cgcggtggcaggtgc
i macNem1.NW_012017243v1       I 20205 C 0
s cerAty1.NW_012001098v1          167701 161 -   1025902 aagaTAgg-ccaggcgcgtt-gactcacacctgtcatcccagcactttgggaggccgaggtgggtggatca--tgaggtcaggagtttgagaccagcctggccagcaaggtgaag-ccccgtctctgctaaaaatacgaaaattagccggg-cgcagtggcaagtgc
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1           98803 163 -    350446 aagaTAgg-ccaggcgcgtt-gcctcacacttgtcatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccagcaaggtgaag-ccccgtctctgctaaaaatactaaaattagctggg-cgcggtggcaggtgc
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253106 163 +   1230721 aagaTAgg-ccaggcgcgtt-gacccacacctgtcatcccagcactttgggaggccgaggcgggtggatcacctgaggttgagagttcaagaccagcctggccagcaaggtaaag-ccccgtctctgctaaaaacactaaaattagctgag-tgcggtggcaggtgc
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I
e chlSab2.chrUn_KE147541v1        138974 1688 -    811265 I

a score=459050.000000
s hg38.chrX_KI270880v1_alt        142634 107 +    284869 ctgtaatcccagct--actcgggaggctgaggcaggagaatggcttgaacccgggaggcggaggtttcagtgagccgagactgcgccattgcaccccagcctgggcagc
s panTro5.chrX                    296197 107 + 155549662 ctgtaatcccagct--actcgggaggctgaggcaggagaatggcttgaacctgggaggcggaggttgcagtgagccgagattgcgccattgaactccagcctgggcaac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44130 103 -    177848 ctgtaatcccagct--actcgggaggctgaggcaggagaatggcttgaacctgggaggcggaggtttcagtgagccgagactgcgccattgcac-ccagcctggg---c
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200421 108 +    417917 ctgtaatcccagcttacttcaggaggctgaggcaggagaatgg-ttgaacctgggagggggaggttgcagtgagccgagactgtgccattgcaccccagcctgggcaac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266734 107 + 180051392 ctgtcatcccagct--actcgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagactgtgccactgaactccagcctgggcaag
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            2242 107 -     71016 ctgtaatcccagct--actcgggaggctgaagcaggagaatcgcttgaacccgggaggcagaggttgcagtcagccgagactgtgccattgcactctagcctgggcaag
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          252354 107 +  25972781 ctgtcatcccagct--actcgggagggtgaggcaggagaatcgcttgaacccgggaggcagaggttgcggtcagccgagactgtgccattgcactccagcctgggcaag
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          167862 107 -   1025902 ctataatcccagct--actcgggaggctgaggcaggacaatggcttcaatctgggaggcagaggttgcagtgagccgagactgtgccattacactccagcctgggcaag
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        140662 107 -    811265 ctgtgatcccagtt--actcgggaggctgaggcaggggaatggcttcaatctgggaggcggaggttgcagtgagccgagactgtgccattgcactgcagcctgggcaag
i chlSab2.chrUn_KE147541v1     I 1688 C 0
s manLeu1.NW_012108508v1           98966 107 -    350446 ctgtcatcccagct--actcgggaggctgaggcaggagaatcgcttgaatctaggaggcagagattgcagtgagccgagactgtgccattgcactccagcctgggcaag
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253269 107 +   1230721 ctgtcatcccagct--actcgggaggctgaggcaggggaatggcttgaatctgggaggcagaggttgcagtgagctgagactgcgccattgcactgtagcctgggcaac
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193226 178 +    465904 I
e otoGar3.GL873584                198809 4057 +  11138919 I

a score=237160.000000
s hg38.chrX_KI270880v1_alt        142741 66 +    284869 aagagcgaaactccgtctcaag--aaaagaaaag---aaaaaaaaT-----------------------GCTCAGGTACATTTTTGCTTTATTT
s panTro5.chrX                    296304 66 + 155549662 aagagcaaaactccgtctcaag--aaaagaaaag---aaaaaaaaT-----------------------GCTCAGGTACATTTTTGCTTTATTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44233 69 -    177848 aagagcgaaactccgtctcaag--aaaagaaaagaaaaaaaaaaaT-----------------------GCTCAGGTACATTTTTGCTTTATTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200529 66 +    417917 aagagggaaactccgtgtcaag--aaaagaaaag---aaaaaaaaT-----------------------GCTCAGGTACATTTTTGCTTTATTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266841 84 + 180051392 aagagcaaaactccgtctcaag--aaaaaaaaga---aaaagaaag--aaaGATAGAAAA---AAAACCGCTCAGGTACATGTTTGCTTTATTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            2349 84 -     71016 aagagcaaaactccgtctcaag--aaaaaaaaga---aaaagaaag--aaagaaaGAAAG---AAAACCGCTCAGGTACATGTTTGCTTTATTC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          252461 85 +  25972781 aagagcaaaactccgtctcaag--aaaaaaaaga---aaaagaaag--aaagaaagaaag--aaaaaCCGCTCAGGTACACGTTTGCTTTATTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          167969 90 -   1025902 aagagcgaaactccgtctcaag-aaaaaaaaaga---aaaagaaagaaaaagaaagaaaGAAAAAAACCGCTCAGGTACGTGTTTGCTTTATTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        140769 78 -    811265 aagagcgaaactccgtctcaac--aaaaaaaaga---aaaagaaat--aaagaaaaA---------ACCGCTCAGGTATGTGTTTGCTTTATTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           99073 83 -    350446 aagagtgaaactccgtctcaag--aaaaaaaaga---aaaagaaag--aaagaaaGAAAA----ACACCGCTCAGGTACGTGTTTGCTTTATTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253376 74 +   1230721 aagagtgaaactgcatctcaagaaaaaaaaaaga---aaaagaaaa--aataaaTGATCA---------------GTACGTGTTTGCTTTATTC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                202866 63 +  11138919 AGGAGAGAACTGTTGTCTCAGG--CCAGGA---G---GCTGGAGAT-----------------------GCACACGGGGGTATTTGCTTTATTG
i otoGar3.GL873584             I 4057 C 0
e saiBol1.JH378345                193226 178 +    465904 I

a score=231279.000000
s hg38.chrX_KI270880v1_alt        142807 47 +    284869 CAGGATTTCTTTACGTTGCTGTGAAAACCTGGATGTT-GGGGGCTCTG
s panTro5.chrX                    296370 47 + 155549662 CAGGATTTCTTTACGTTGTTGCAAAAACCTGGATGTT-GGGGGCTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44302 47 -    177848 CAGGATTTCTTTACGTTGTTGCGAAAACCTGGATGTT-GGGGGCTCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200595 45 +    417917 CAGGATTTCTTTACGTTGCTGTGGAAACT--GGTGTT-GGGGGCTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266925 47 + 180051392 CAGGATTGCTTTATGTTGCCGTGAAACCCTGGATGGT-GGGGGCTCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            2433 47 -     71016 CAGGATTGCTTTATGTTGCCGTGAAACCCTGGATGGT-GGGGGCTCTG
i macFas5.chrUn_KE146020       C 0 M 1000
s macNem1.NW_012017243v1          252546 47 +  25972781 CAGGATTGCTTTATGTTGCCGTGAAACCCTGGATGGT-GGGGGCTCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          168059 47 -   1025902 CAGGATTGCTTTATGTTGCCGTGAAACCCTGGATGGT-GGGGGCTCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        140847 47 -    811265 CAGAATTGCTTTATGTTGCCGTGAAACCCTGGATCGT-GGGGGCTCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           99156 47 -    350446 CAGGATTGCTTTATGTTGCCGTGAAACCCTAGATGGT-GGGGGCTCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253450 47 +   1230721 CAGGATTGCTTTATGTTGCCGTGAAACCCTGGATGGT-GGGGGCTCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                193404 48 +    465904 cAGAATTCCTTCATTTTCCTGTGAAAACCTGGATGCCGGGGGGGTCTG
i saiBol1.JH378345             I 178 C 0
s otoGar3.GL873584                202929 45 +  11138919 AAGGAACTATTCATTCCGCTTACAAAACATGGGTGAT-GGAGACCC--
i otoGar3.GL873584             C 0 C 0

a score=38684.000000
s hg38.chrX_KI270880v1_alt        142854 29 +    284869 TCTGTGTATCGTAGACGGAGTTTTGAATT
s panTro5.chrX                    296417 29 + 155549662 TCTGTGTGTCGTAGACGGAGTTTTGAATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44349 29 -    177848 TCTGTGTGTCGTAGACGGAGTTTTGAATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200640 29 +    417917 TCTGTGTATCGTAGACAGAGTTTTGAATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266972 14 + 180051392 TCTGCATATTCTAG---------------
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          252593 14 +  25972781 TCTGCGTATTCTAG---------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          168106 14 -   1025902 TCTGCATATCCCAG---------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        140894 14 -    811265 TCTGCGTATCCCAT---------------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           99203 14 -    350446 TCTGCATATTCTAG---------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253497 29 +   1230721 TCTGCGTATTCCAGAGGGAGTTTCCAGTT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                193452 29 +    465904 TTTGCAGATGGCAGAGGGAGTTCTGCATT
i saiBol1.JH378345             C 0 I 610
s otoGar3.GL873584                202974 29 +  11138919 TCTGCCTTTTGCAGGGGGAGTTTTGAATC
i otoGar3.GL873584             C 0 C 0
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=13383.000000
s hg38.chrX_KI270880v1_alt        142883 12 +    284869 GCTCCAGTGAAA
s panTro5.chrX                    296446 12 + 155549662 GCTCCAGTGAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44378 12 -    177848 GCTCCAGTGAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200669 12 +    417917 GCTCCAGTGAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          253526 12 +   1230721 GTTCCAGTGGAA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                203003 12 +  11138919 TTTCCATTGAAA
i otoGar3.GL873584             C 0 I 481
e manLeu1.NW_012108508v1           99217  0 -    350446 C
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        140908  0 -    811265 C
e cerAty1.NW_012001098v1          168120  0 -   1025902 C
e rheMac8.chr6                 143266986  0 + 180051392 C
e macNem1.NW_012017243v1          252607  0 +  25972781 C
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=352442.000000
s hg38.chrX_KI270880v1_alt        142895 114 +    284869 C--ACAAGTA-TTTTACCTTACGCTGTCAACCTGCTGGGGGAAGCGTGAAGACAGTTTAACCTTCTGGCTCC-GGTAATCATCTTGTCTCAGAGACCTCGGAGAGCTCCCAGAGCCTG
s panTro5.chrX                    296458 114 + 155549662 C--ACAAGTA-TTTTACCTTATGCTGTCAACCTGCTGGGGGAAGCGTGAAGACAGTTTAACCTTCTGGCTCC-AGTAATCATCTTGTCTCAGAGACCTCGGAGAGCTCCCAGAGCCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44390 114 -    177848 C--ACAAGTA-TTTTACCTTATGCTGTCAACCTGCTGGGGGAAGCGTGAAGACAGTTTAACCTTCTGGCTCC-GGTAATCATCTTGTCTCAGAGACCTCGGAGAGCTCCCAGAGCCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200681 116 +    417917 C-AACAAGTATTTTTACCTTATGCTGTCAACCTGCTGGGGGAAGCGTGAAGACAGTTTAACCTTCTGGCTCCGGGTAATCATCTTGTCGCAGAGACCTCGGAGAGCT-CCAGAGCCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143266986 107 + 180051392 ---------A-TGTTACCTTATGCTGTGAACCTGCTGGGGGGAGTGTGAAGACCGTTTAACCTTCCGGCTCT-GGTGAGCACCTTGTTGCAGAGAACTCAGAAAGGTCCTGGAGCCTG
i rheMac8.chr6                 C 0 I 2
s macNem1.NW_012017243v1          252607 107 +  25972781 ---------A-TGTTACCTTATGCTGTGAACCTGCTGGGGGGAGTGTGAAGACCGTTTAACCTTCCGGCTCT-GGTGAGCACCTTGTTGCAGAGAACTCAGAAAGGTCCTGGAGCCTG
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          168120 107 -   1025902 ---------A-TGTTACCTTATGCTGTGAACCTGCTGGGGGGAGTGTGAAGACCATTTAACCTTCCGGCTCT-GGTGAGCACCTTGTCGCAGAGACCTCGGAAAGCTCCTGGAGCCTG
i cerAty1.NW_012001098v1       C 0 I 26
s chlSab2.chrUn_KE147541v1        140908 107 -    811265 ---------A-TGTTACCTTATGCTGTGAACCTGCTGGGGGGAGTGTGACGACCATTTAACCTTCCGGCTCT-GGTGAGCACCTTGTCGCGGAGACCTCGGGGAGCTCCTGGAGCCTG
i chlSab2.chrUn_KE147541v1     C 0 I 26
s manLeu1.NW_012108508v1           99217 107 -    350446 ---------A-TGTTACCTTATGCTGTGAACCTGCTGGGGGGAGTGTGAAGACCATTTAACCTTCCGGCTCT-GGTGGGCACCTTGTTGCAGAGACCTCGGAAAGCTCCTGGAGCCTG
i manLeu1.NW_012108508v1       C 0 I 26
s colAng1.NW_012115411v1          253538 114 +   1230721 ACACTGAGTA-TGTTACCTTATGCTGTGAACCTGCTGGGGGAAGCGTAAAGACAATTTAACCTTCCGGCTCT-GGTGAGCACCTTGTCAC--AGACCTCGGAGAGCTCCTGGAGCCCG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=18379.000000
s hg38.chrX_KI270880v1_alt        143009 26 +    284869 GCTGCCACGGTGGTTCTATATACC--C-T
s panTro5.chrX                    296572 26 + 155549662 GCTGCCACGGTGGTTCTATATACC--C-C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44504 28 -    177848 GCTGCCACGGTGGTTCTATATACTCAC-C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200797 26 +    417917 GCTGCCACGGTGGTTCTATATACC--C-C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267095 24 + 180051392 GACGCTACGGTGGTT-TATTTTCC--C--
i rheMac8.chr6                 I 2 C 0
s macNem1.NW_012017243v1          252716 24 +  25972781 GATGGTACGGTGGTT-TATTTTCC--C--
i macNem1.NW_012017243v1       I 2 C 0
s colAng1.NW_012115411v1          253652 25 +   1230721 GATGCTATAGTGGTT-TATTTTTT--CC-
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1           99324 26 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I
e chlSab2.chrUn_KE147541v1        141015 26 -    811265 I
e cerAty1.NW_012001098v1          168227 26 -   1025902 I
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=110378.000000
s hg38.chrX_KI270880v1_alt        143035 32 +    284869 CCAGCCCTGGCCTGCCTTGGGAC-ACCCCTCTC
s panTro5.chrX                    296598 32 + 155549662 CCGGCCCTGGCCTGCCTTGGGAC-ACCCCTCTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44532 32 -    177848 CCGGCCCTGGCCTGCCTTGGGAC-ACCCCTCTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200823 33 +    417917 GCGGCCCTGGCCTGCCTTGGGACAACCCCTCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267119 32 + 180051392 CCAGCCCTGGCCTGCCTTGGGAC-ACCCCCCCT
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          252740 32 +  25972781 CCAGCCCTGGCCTGCCTTGGGAC-ACCCCCCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          168253 32 -   1025902 CCAGCCCTGGCCTGCCTTGGGAC-ACCCCCGCT
i cerAty1.NW_012001098v1       I 26 C 0
s chlSab2.chrUn_KE147541v1        141041 32 -    811265 CTAGCCCTGGCCTGCCTTGGGAC-ACCCCCCCC
i chlSab2.chrUn_KE147541v1     I 26 I 22
s manLeu1.NW_012108508v1           99350 32 -    350446 CAAGCCCTGGCCTGCCTTGGGAC-ACCCCCTCT
i manLeu1.NW_012108508v1       I 26 I 1
s colAng1.NW_012115411v1          253677 32 +   1230721 CTGGCCCTGGCCTGCCTTGGGTC-ACCCGCCGT
i colAng1.NW_012115411v1       C 0 I 2
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=3600.000000
s hg38.chrX_KI270880v1_alt        143067 1 +    284869 C
s panTro5.chrX                    296630 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44564 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200856 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267151 1 + 180051392 C
i rheMac8.chr6                 C 0 I 9
s macNem1.NW_012017243v1          252772 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 I 9
s cerAty1.NW_012001098v1          168285 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 I 9
s manLeu1.NW_012108508v1           99383 1 -    350446 C
i manLeu1.NW_012108508v1       I 1 I 8
s colAng1.NW_012115411v1          253711 1 +   1230721 C
i colAng1.NW_012115411v1       I 2 I 7
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I
e chlSab2.chrUn_KE147541v1        141073 22 -    811265 I
e macFas5.chrUn_KE146020            2480 1000 -     71016 M

a score=20854.000000
s hg38.chrX_KI270880v1_alt        143068 9 +    284869 GCCTGCCGG
s panTro5.chrX                    296631 9 + 155549662 GCCTGCCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44565 9 -    177848 GCCTGCCGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200857 9 +    417917 GCCTGCCGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267161 9 + 180051392 GTCTGTCCT
i rheMac8.chr6                 I 9 C 0
s macFas5.chrUn_KE146020            3489 9 -     71016 GTCTGTCCT
i macFas5.chrUn_KE146020       M 1000 C 0
s macNem1.NW_012017243v1          252782 9 +  25972781 GTCTGTCCT
i macNem1.NW_012017243v1       I 9 C 0
s cerAty1.NW_012001098v1          168295 9 -   1025902 GTCTGTCCT
i cerAty1.NW_012001098v1       I 9 C 0
s manLeu1.NW_012108508v1           99392 9 -    350446 GTCTGTCCT
i manLeu1.NW_012108508v1       I 8 C 0
s colAng1.NW_012115411v1          253719 9 +   1230721 GTCTGCACT
i colAng1.NW_012115411v1       I 7 C 0
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I
e chlSab2.chrUn_KE147541v1        141073 22 -    811265 I

a score=1283789.000000
s hg38.chrX_KI270880v1_alt        143077 313 +    284869 CCCCAGAATTTCCCCACACACGCGGTCATCACAGCCCGAGATGTTTAATGACGGCTTCATGCACCAGGCTATTGCCCTAAACACGGGTGACAGGCCAAACACACACT--AATTACCTAACTCAATTCAAGCCCGCCTGGCCCC-GTGGAAAGGCTGAGCTGGGG-ATGCACGCAGGTG-CCCCGTCGTTACCTCCGGATGTCAAAT-TGAAGTGAGGTTTTC-CCGCATGAGCGGGGAGA--GCTGTTTCTA-----CGCACCAAGATTTCC-ACGG-TTTGCAGGAGAAAGAGTTTTGTGTCTGCCCTCTGGACAGCCCTG-TCAGTTT
s panTro5.chrX                    296640 313 + 155549662 CCCCAGAATTTCCCCACACACGTGGTCATCACAGCCCGAGATGTTTAATGACGGCTTCATGCACCAGGCTATTGCCCTAAACACGGGTGACAGGCCAAACACACACT--AATTACCTAATTCAATTCAAGCCCGCCTGGCCCC-GTGGAAAGGCTGAGCTGGGG-ATGCACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAAAT-TGAAGTGAGCTTTTC-CCGCATGAGCCGGGAGA--GCTGTTTCTA-----TGCACCAAGATTTCC-ACGG-TTTGCAGGAGAAAGAGTTTTGTGTCTGCCCTCTGGACAGCCCTG-TCAGTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44574 313 -    177848 CCCCAGAATTTCCCCACACACGCGGTCATCACAGCCCGAGATGTTTAATGACGGCTTCATGCACCAGGCTATTGCCCTAAACACGGGTGACAGGCCAAACACACACT--AATTACCTAATTCAATTCAAGCCCGCCTGGCCCC-GTGGAAAGGCTGAGCTGGGG-ATGCACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAAAT-TGAAGTGAGGTTTTC-CCGCATGAGCGGGGAGA--GCTGTTTCTA-----CGCACCAACATTTCC-ACGG-TTTGCAGGAGAAAGAGTTTTGTGTCTGCCCTCTGGACAGCCCTG-TCAGTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          200866 311 +    417917 CCCCAGAATTT-CCCACACACGCGGTCATCACAGCCCGAGATGTTTAATGACGGCTTCATGCAGC-GGCTA-TGCCCTAAACA-GGGTGACAGGCCAAACACACTCTTAAATTACTAAATTCAATTCAAGCC--GCTGGCCTA-GTGGAAAGGCTGAGCGGGGA-ATGCACACAGGTG--CCCGTGGTTACCTCCGGATGTCAAAT-TGAAGTGAGGTTTT--CCGCATGAGCGGGGAGACCGTTTCTTCTAC----CGCACCAACATTTCCAACGG-TTTGCAGGAGAAACAGTTTTGTGTCTG-CCTCTGGACAGCCCTGTTCAGTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267170 321 + 180051392 CCCCAGACCTCCCCCACACACCCGGTCATCGCAGCCCGTGATGTTTAATGACGGCTTCATTCACCGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCTGGGCCC-GTGGAAAGGCTGAGCCGGGC-ATGAACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAGCTATGAAGTCAGGTCTTCTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGGAGAAACGGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            3498 321 -     71016 CCCCAGACCTCCCCCACACACCCGGTCATCGCAGCCCGTGATGTTTAATGACGGCTTCACGCACCGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCTGGGCCC-GTGGAAAGGCTGAGCCGGGG-ATGAACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAACTATGAAGTCAGGTCTTCTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGGAGAAACGGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          252791 321 +  25972781 CCCCAGACCTCCCCCACACACCTGGTCATCGCAGCCCGTGATGTTTAATGACGGCTTCATGCACCGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCTGGGCCC-GTGGACAGGCTGAGCCGGGG-ATGAACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAAATATGAAGTCAGGTCTTCTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGGAGAAACGGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          168304 322 -   1025902 CCCCAGACCTCCCCCACACACCCGGTCATCGCAGCCCGTGATGTTTAATGACGGCTTCATGCACCGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCCGGGCCCGGTGGAAAAGCTGAGCCCGGG-ATGAACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAAATATGAAGTCAGGTCTTCTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGCAGACACGGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        141095 320 -    811265 CCCCAGACCTCCCCCACACACCCGGTCACCGCAGCCCGTGATGTTTAATGACGGCTTCATGCACTGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCCGGGCCT-GTGGAAAGGCTGAGCCGGGG-ATGAACACAGGTG-CCCCGTCGTCACCTCCGGATGTCAAATG-GAAATCAGGTCTTGTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGGAGAAACCGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i chlSab2.chrUn_KE147541v1     I 22 C 0
s manLeu1.NW_012108508v1           99401 322 -    350446 CCCCAGACCTCCCCCACACACCCGCTCATCGCAGGCTGTGATGTTTAATGACGGCTTCATGCACCGGGCTATGGCCCTAAACGCTGGTGACAGGCCCAACACACACT--AATTACCTAATTGAATTCCAGCCCGCCTGGGCCCGGTGGAAAGGCTGAGCCGGGG-ATGAACACAGGTG-CCCCGTCGTTACCTCCGGATGTCAAATATGAAGTCAGGTCTTCTCCGCCCGAGCCGGAGGA--GCCGTTTCTCCTGCGCGCGCCGAGATTTCC-ACGGTTTTGCAGGAGACACGGTTTCGCACCTGCCCTCTGGACAGCCTTG-TCAGTTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          253728 319 +   1230721 CCCCAGAACTCCCCCACACACCCGGTCATCGCAGCCCGTGATGTTTAATTATGGCTTCATGCACCGGGCTGTGGCCCTAAACCCTGGTGACAGGCCCAATGCACACT--AATTACCTAATTTAATTCCAGCCCGCCTGGCCCC-GTAGAAAGGCTGAGCCGGGGAATGAACACAGGTGCCCCCGTCGTCACCTCCGGATGTCAAAC-TGAAGTCAGGTCTTCTCCGCCTGAGCCGGAGGA--GCCGTTTCTC---TGCGCGCCGAGATTTCC-ATGGTTTTGCAGGAGAAACGGTTTCGCAGCTGCCCTCTGGACAGCCTTG-TCAGTTT
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203015 481 +  11138919 I

a score=158841.000000
s hg38.chrX_KI270880v1_alt        143390 33 +    284869 TATCAAGCGTGTCTGATTAAGGAATATTT-AAAG
s panTro5.chrX                    296953 33 + 155549662 TATCAAGCGTGTCTGATTAAGGAATATTT-CAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44887 33 -    177848 TATCAAGTGTGTCTGATTAAGGAATATTT-CAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201177 34 +    417917 TATCGAGCGTGTCTGATTAAGGAATATTTAAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267491 33 + 180051392 TATCGACCGTGTCTGATGAAGGAATATTT-AAAG
i rheMac8.chr6                 C 0 I 463
s macFas5.chrUn_KE146020            3819 33 -     71016 TATCGACCGTGTCTGATGAAGGAATGTTT-AAAG
i macFas5.chrUn_KE146020       C 0 I 2
s macNem1.NW_012017243v1          253112 33 +  25972781 TATCGACCGTGTCTGATGAAGGAATGTTT-AAAG
i macNem1.NW_012017243v1       C 0 I 91
s cerAty1.NW_012001098v1          168626 33 -   1025902 TATCGACCGTGTCTGATGAAGGAATATTT-AAAG
i cerAty1.NW_012001098v1       C 0 I 205
s chlSab2.chrUn_KE147541v1        141415 33 -    811265 TATCGACCGTGTCTGATGAAGGAATATTT-AAAG
i chlSab2.chrUn_KE147541v1     C 0 I 88
s manLeu1.NW_012108508v1           99723 33 -    350446 TATCGACCGTGTCTGATGAAGGAATATTT-AAAG
i manLeu1.NW_012108508v1       C 0 I 197
s colAng1.NW_012115411v1          254047 33 +   1230721 TATCGACTGTGTCTGATGAAGGGATATTT-AAAG
i colAng1.NW_012115411v1       C 0 I 76
s otoGar3.GL873584                203496 33 +  11138919 TATCGAGTTCTTCTCATTAAGAAGTATTT-AAAG
i otoGar3.GL873584             I 481 C 0
e saiBol1.JH378345                193481 610 +    465904 I

a score=21392.000000
s hg38.chrX_KI270880v1_alt        143423 32 +    284869 GTATGTGTT-CAGAAGCGTTTCTCCCCTTCTTT
s panTro5.chrX                    296986 29 + 155549662 GTATGTGTT-CAGAAGCGTTTCTCCCCTTT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44920 32 -    177848 GTATGTGTT-CAGAAGCGTTTCTCCCCTTCTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201211 32 +    417917 GTATGTGTTCCAGAAGCGTTTCTCCCTTCTTT-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            3854 32 -     71016 ACACGCAGT-GAGAAGCATTCCCCTCCTTCTTT
i macFas5.chrUn_KE146020       I 2 I 1043
s otoGar3.GL873584                203529 32 +  11138919 CCATGTGTT-TGGAATCGtttcattccttctct
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141448 88 -    811265 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e colAng1.NW_012115411v1          254080 76 +   1230721 I
e rheMac8.chr6                 143267524 463 + 180051392 I
e macNem1.NW_012017243v1          253145 91 +  25972781 I

a score=14731.000000
s hg38.chrX_KI270880v1_alt        143455 32 +    284869 ------------------TGTGTGTGTGTGTGGCCATGTTTAAAAAAAAC
s panTro5.chrX                    297015 30 + 155549662 --------------------TGTGTGTGTGTGGCTGTGTTTAAAAAAAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44952 29 -    177848 --------------------TGTGTGTGTGTGGCTGTGTTT-AAAAAAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201243 28 +    417917 --------------------TGCGTGTGTGTGGCTATGTTT--AAAAAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            4929 29 -     71016 ------------------tgtgtgtgtgtgtgGCTAGATT---AAAAACC
i macFas5.chrUn_KE146020       I 1043 I 1
s otoGar3.GL873584                203561 50 +  11138919 cttgtcttctttctttctttcttttttttttGGATATGTTAAAAAAAAAA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141448 88 -    811265 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e colAng1.NW_012115411v1          254080 76 +   1230721 I
e rheMac8.chr6                 143267524 463 + 180051392 I
e macNem1.NW_012017243v1          253145 91 +  25972781 I

a score=4398.000000
s hg38.chrX_KI270880v1_alt        143487 5 +    284869 AAATG
s panTro5.chrX                    297045 5 + 155549662 AAATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44981 5 -    177848 AAATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201271 5 +    417917 AAATG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            4959 5 -     71016 GAATT
i macFas5.chrUn_KE146020       I 1 C 0
s chlSab2.chrUn_KE147541v1        141536 5 -    811265 AAATT
i chlSab2.chrUn_KE147541v1     I 88 C 0
s colAng1.NW_012115411v1          254156 5 +   1230721 AAATT
i colAng1.NW_012115411v1       I 76 C 0
s otoGar3.GL873584                203611 4 +  11138919 AAAG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e rheMac8.chr6                 143267524 463 + 180051392 I
e macNem1.NW_012017243v1          253145 91 +  25972781 I

a score=109029.000000
s hg38.chrX_KI270880v1_alt        143492 34 +    284869 TAAAACCAGTTACAGGCAAAGTAGGCTAGTTTGG
s panTro5.chrX                    297050 33 + 155549662 TAAAACCAGTTACAGGCAAA-TAGGCTACTTTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     44986 33 -    177848 TAAAACCAGTTACAGGCAAA-TAGGCTAGTTTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201276 34 +    417917 TAAAACCAGTTACAGGCAAAGTAGGCTAGTTTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143267987 34 + 180051392 TAAAACCAGTTGCTGGCAAAGTGGGCTAGTTTGG
i rheMac8.chr6                 I 463 I 58
s macFas5.chrUn_KE146020            4964 34 -     71016 TAAAACCAGTTACTGGCAAAGTGGGCCAGTTTGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          253236 34 +  25972781 TAAAACCAGTTACTGGCAAAGTGGGCCAGTTTGG
i macNem1.NW_012017243v1       I 91 I 58
s chlSab2.chrUn_KE147541v1        141541 34 -    811265 TAAAACCAGTTGCTGGCAAAGTGGGCCAGTTTGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          254161 34 +   1230721 TAAAACCAGTTGCCGGCAAAGTAGGCTAGTTTGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                203615 34 +  11138919 CTAAGCTAGTGACAGGCAAAGTAGGGTAGTTTAA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I

a score=29365.000000
s hg38.chrX_KI270880v1_alt        143526 18 +    284869 TGCTGAAATAACGCCGTC
s panTro5.chrX                    297083 18 + 155549662 TGCTGAAATAATGCCATC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45019 18 -    177848 TGCTGAAATAACGCCATC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201310 17 +    417917 TGCTGAAATAA-GCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            4998 18 -     71016 GGCCGGAATAATGCGGTC
i macFas5.chrUn_KE146020       C 0 I 3
s chlSab2.chrUn_KE147541v1        141575 18 -    811265 GGCCGGAATAATGCCGTC
i chlSab2.chrUn_KE147541v1     C 0 I 46
s colAng1.NW_012115411v1          254195 18 +   1230721 AGCCGGAATAATGCCGTC
i colAng1.NW_012115411v1       C 0 I 46
s otoGar3.GL873584                203649 18 +  11138919 TGCTTAAATAATGTGGTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e rheMac8.chr6                 143268021 58 + 180051392 I
e macNem1.NW_012017243v1          253270 58 +  25972781 I

a score=35998.000000
s hg38.chrX_KI270880v1_alt        143544 75 +    284869 GTTCATGAGCCGGCTTAAATAATGCAGTTGTTAGAAACCAG-------CTCTCAAAGC-----TGTGGGTTGGCTGAGG-AGGGTTAG----
s panTro5.chrX                    297101 75 + 155549662 GTTCATGAGCCGGCTTAAATAATGCAGTTGTTAGAAACCAG-------CTCTCAAAGC-----TGTGGGTTGGCTGAGG-AGGGTTAG----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45037 75 -    177848 GTTCATGAGCCGGCTTAAATAATGCAGTTGTTAGAAACCAG-------CTCTCAAAGC-----TGTGGGTTGGCTGAGG-AGGGTTAG----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201327 73 +    417917 GTTCATGAGC--GGTTAAATAATGCAGTTGTTAGAAAGCAG-------CTCTCAAAGC-----TGTGGGTTGGCTGAGG-AGGGTTTG----
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5019 33 -     71016 GTGGACAAGCTGGCTTAAAGAATGCAGGTTTTT-----------------------------------------------------------
i macFas5.chrUn_KE146020       I 3 C 0
s otoGar3.GL873584                203667 92 +  11138919 GTTGATAAAGCAGCATAAACAATGCAGTTGTTATGAGGCAGATTCCTTTTCCCAAAGCCCTGTTATAGCTTCACTAAGGCAGGAGGTGTTCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141593 46 -    811265 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e colAng1.NW_012115411v1          254213 46 +   1230721 I
e rheMac8.chr6                 143268021 58 + 180051392 I
e macNem1.NW_012017243v1          253270 58 +  25972781 I

a score=4656.000000
s hg38.chrX_KI270880v1_alt        143619 4 +    284869 TACG
s panTro5.chrX                    297176 4 + 155549662 TACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45112 4 -    177848 TACG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201400 4 +    417917 TACG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5052 4 -     71016 TACC
i macFas5.chrUn_KE146020       C 0 C 0
s colAng1.NW_012115411v1          254259 4 +   1230721 TACG
i colAng1.NW_012115411v1       I 46 C 0
s otoGar3.GL873584                203759 4 +  11138919 TCTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99756 197 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141593 46 -    811265 I
e cerAty1.NW_012001098v1          168659 205 -   1025902 I
e rheMac8.chr6                 143268021 58 + 180051392 I
e macNem1.NW_012017243v1          253270 58 +  25972781 I

a score=97956.000000
s hg38.chrX_KI270880v1_alt        143623 21 +    284869 AGGTCCTGACCCCAAACCTGT---
s panTro5.chrX                    297180 21 + 155549662 AGGTCCTGACCCCAAACCTGT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45116 21 -    177848 AGGTCCTGACCCCAAACCTGT---
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201404 19 +    417917 ACGT-CTGA-CCAAAACCTGT---
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268079 21 + 180051392 AGGTCCTGACCCCAAACCTGT---
i rheMac8.chr6                 I 58 C 0
s macFas5.chrUn_KE146020            5056 21 -     71016 AGGTCCTGACCCCAAACCTGT---
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          253328 21 +  25972781 AGGTCCTGACCCCAAACCTGT---
i macNem1.NW_012017243v1       I 58 I 1092
s cerAty1.NW_012001098v1          168864 21 -   1025902 AGGTCCTGACCCCAAACCTGT---
i cerAty1.NW_012001098v1       I 205 C 0
s chlSab2.chrUn_KE147541v1        141639 21 -    811265 AGGTCCTGCCCCCAAACCTGT---
i chlSab2.chrUn_KE147541v1     I 46 C 0
s manLeu1.NW_012108508v1           99953 21 -    350446 AGGTCCTGACCCCAAACCTGT---
i manLeu1.NW_012108508v1       I 197 C 0
s colAng1.NW_012115411v1          254263 21 +   1230721 AGGTCCTGGCCCCAAACCTGT---
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                203763 21 +  11138919 GGGTCCTGACCCCAA---TGTGCT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                193481 610 +    465904 I

a score=23367.000000
s hg38.chrX_KI270880v1_alt        143644 9 +    284869 GTGTATCTG
s panTro5.chrX                    297201 9 + 155549662 GTGTATCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45137 9 -    177848 GTGTATCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201423 8 +    417917 GTGTATCT-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268100 9 + 180051392 TTGTATCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            5077 8 -     71016 TTGT-TCTG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          168885 9 -   1025902 TTGTATCTG
i cerAty1.NW_012001098v1       C 0 I 90
s chlSab2.chrUn_KE147541v1        141660 9 -    811265 TTGTATCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1           99974 9 -    350446 TTGTATCTG
i manLeu1.NW_012108508v1       C 0 I 208
s colAng1.NW_012115411v1          254284 9 +   1230721 TTGTATGTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                203784 9 +  11138919 TTGTGCCCA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                193481 610 +    465904 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=72424.000000
s hg38.chrX_KI270880v1_alt        143653 39 +    284869 GAGCCGGCGGGAGACATTTGGCCTGGAGTATGAGGCTGG
s panTro5.chrX                    297210 39 + 155549662 GAGCCGGCGGGAGACATTTGGCCTGGAGTATGAGGCTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45146 39 -    177848 GAGCCGGCGGGAGACATTTGGCCTGGAGTATGAGGCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201431 39 +    417917 GAGCTGGCGGGAGACATTTGGCCTGGACTATGAGGCTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268109 39 + 180051392 GAGCAGGTGGCAGACGTTTGGCCTGGAACATGAGGCTGG
i rheMac8.chr6                 C 0 I 90
s macFas5.chrUn_KE146020            5085 30 -     71016 CAGCAGGT--------TTTGG-CTGGAATATGAGGCCGG
i macFas5.chrUn_KE146020       C 0 C 0
s chlSab2.chrUn_KE147541v1        141669 39 -    811265 CAGCAGGTGGCACACGTCCGGCCTGGAGTATGAGGCTGG
i chlSab2.chrUn_KE147541v1     C 0 I 60
s colAng1.NW_012115411v1          254293 39 +   1230721 GAGCGGGTGGGAGATGTATTGCCTGGAGTATGAGGCCGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                203793 38 +  11138919 GAGCTGTAGAGACAGGTGTTGCGTGGAGCA-GGGACCGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=1314.000000
s hg38.chrX_KI270880v1_alt        143692 1 +    284869 C
s panTro5.chrX                    297249 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45185 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201470 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5115 1 -     71016 C
i macFas5.chrUn_KE146020       C 0 I 17
s colAng1.NW_012115411v1          254332 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 I 59
s otoGar3.GL873584                203831 1 +  11138919 T
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141708 60 -    811265 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=-280.000000
s hg38.chrX_KI270880v1_alt        143693 3 +    284869 TGG-
s panTro5.chrX                    297250 3 + 155549662 TGG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45186 3 -    177848 TGG-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201471 3 +    417917 TGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5133 3 -     71016 GGT-
i macFas5.chrUn_KE146020       I 17 C 0
s otoGar3.GL873584                203832 3 +  11138919 -GGG
i otoGar3.GL873584             C 0 I 53
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141708 60 -    811265 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e colAng1.NW_012115411v1          254333 59 +   1230721 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=10998.000000
s hg38.chrX_KI270880v1_alt        143696 17 +    284869 ACCTGGAAGGTCCT----CAG
s panTro5.chrX                    297253 17 + 155549662 ACCTGGAAGGTCCT----CAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45189 17 -    177848 ACCTGGAAGGTCCT----CAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201474 17 +    417917 ATCTGGAAGGTCCT----CAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5136 21 -     71016 GCCTGCAAGGTATTCGGACAG
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e otoGar3.GL873584                203835 53 +  11138919 I
e chlSab2.chrUn_KE147541v1        141708 60 -    811265 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e colAng1.NW_012115411v1          254333 59 +   1230721 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=4279.000000
s hg38.chrX_KI270880v1_alt        143713 6 +    284869 CGTTAG
s panTro5.chrX                    297270 6 + 155549662 TGTTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45206 6 -    177848 TGTTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201491 6 +    417917 CGTTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5157 6 -     71016 CGTTCC
i macFas5.chrUn_KE146020       C 0 C 0
s otoGar3.GL873584                203888 6 +  11138919 CGCTGG
i otoGar3.GL873584             I 53 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e saiBol1.JH378345                193481 610 +    465904 I
e chlSab2.chrUn_KE147541v1        141708 60 -    811265 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e colAng1.NW_012115411v1          254333 59 +   1230721 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=8849.000000
s hg38.chrX_KI270880v1_alt        143719 12 +    284869 A-GGGACTGTTTC
s panTro5.chrX                    297276 12 + 155549662 A-GGGACTGTTTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45212 12 -    177848 A-GGGACTGTTTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201497 13 +    417917 AGGGGGCTGTTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5163  9 -     71016 A-GG---TGTTCC
i macFas5.chrUn_KE146020       C 0 I 3
s saiBol1.JH378345                194091 12 +    465904 A-GGGTCTCCTTG
i saiBol1.JH378345             I 610 C 0
s otoGar3.GL873584                203894 11 +  11138919 --AGGGCTCTTTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e chlSab2.chrUn_KE147541v1        141708 60 -    811265 I
e cerAty1.NW_012001098v1          168894 90 -   1025902 I
e colAng1.NW_012115411v1          254333 59 +   1230721 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=57990.000000
s hg38.chrX_KI270880v1_alt        143731 28 +    284869 GGGAAGG--TTTTCTGGCAGCT--GAGTCCCA
s panTro5.chrX                    297288 28 + 155549662 GGGAAGG--TTTTCTGGCAGCT--GAGTCCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45224 28 -    177848 GGGAAGG--TTTTCTGGCAGCT--GAGTCCCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201510 27 +    417917 GGGAAGG--TTTTCTGGCAGCT--GAGT-CCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5175 30 -     71016 GGGAAGG--CCTTGTGGCAGCTGAGAGTGCGG
i macFas5.chrUn_KE146020       I 3 C 0
s cerAty1.NW_012001098v1          168984 28 -   1025902 GGGAAGG--CCTTGTGGCAGCT--GAGTGCGG
i cerAty1.NW_012001098v1       I 90 C 0
s chlSab2.chrUn_KE147541v1        141768 28 -    811265 GGGAAGG--CTTTGTGGCAGCT--GAGTGCGA
i chlSab2.chrUn_KE147541v1     I 60 C 0
s colAng1.NW_012115411v1          254392 28 +   1230721 GGGAAGG--CCTTGTGGCGGCT--GAGTGCGA
i colAng1.NW_012115411v1       I 59 C 0
s saiBol1.JH378345                194103 27 +    465904 -GGCAAG--GCCTCTGGCAGCT--GAGGGGGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                203905 28 +  11138919 TGGAAGGCACATGGTGGC--CT--GGGTGGCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e rheMac8.chr6                 143268148 90 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=244506.000000
s hg38.chrX_KI270880v1_alt        143759 91 +    284869 ATTCCAGGAGGAAGTAGGCATTGAGTAGATAATTTCAGCTCCCCCATTGAAGCCGTCCAGCCTGCAGAG-AAAGATAGCAGTGG---CCCCCTGC
s panTro5.chrX                    297316 91 + 155549662 ATTCCAGGAGGAAGTAGGCACTGAGTAGATAATTTCAGCTCCCCCAGTGAAGGCGTCCAGCCTGCAGAG-AAAGATAGCAGTGG---CCCCCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45252 91 -    177848 ATTCCAGGAGGAAGTAGGCACTGAGTAGATAATTTCAGCTCCCCCAGTGAAGGCGTCCAGCCTGCAGAG-AAAGATAGCAGTGG---CCCCCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201537 90 +    417917 GTTCCAGGAGGAAGTAGGCACTGAGTAGATAATTTCAGCTCCCCCAGTGAAGGCGTCCAGCCTGCAGAGAAAAGATAGCAGCGG---CCCCTG--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268238 90 + 180051392 ATTCCAGGAGGAAGGAGGGACTGAGGAGATCATCCCACCTCCCCCAGTGAAGGAGTTCA-CCTGCCGAG-AACGAAAGCAGCGG---CCGGTTGT
i rheMac8.chr6                 I 90 C 0
s macFas5.chrUn_KE146020            5205 90 -     71016 ATTCCAGGAGGAAGGAGGGACTGAGGAGATCATCCCACCTCCCCCAGTGAAGGAGTTCA-CCTGCCGAG-AACGAAAGCAGCGG---CCGGTTGT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          169012 90 -   1025902 ATTCCAGGAGGAAGCAGGGACTGAGGAGATCATCCCACCTGCCCCAGTGAAGGAGTCCA-CCTGCCGAG-AACGAAAGCAGTGG---CCTCTTGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        141796 90 -    811265 ATCCCAGGAGGAAGGAGGGACCGAGGAGATCATCCCACCTGCCCCAGTGAAGGAGTTCA-CCTGCCGAG-AACGAAAGCAGTGG---CCACTTGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          254420 93 +   1230721 ATTCCAGGAGGAAGGAGGGACCGAGGAGATCATCCCACCTCCCCCAGTGAAGGAGTCCA-CCTGCCGAG-AAAGAAAGCAGAGTGACCCCCTTGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                194130 91 +    465904 ATTCCAGGAGGAAGTAGGGGCCGATTGAGTCATTCCTGCTCCCCCAGTGAACGTGTCCAGGGTGCTGAG-AAAGAAAAGACCGT---CCCGCTGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                203933 86 +  11138919 -TTTCTGGGG---GCTGGGGTTGAGCGAGTGTTCCCGACCTGCTCCGTGGAGGTGTCTGGGCAGTTGGT-GGGGGAAGAGACAC---CCAACAT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1           99983 208 -    350446 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=48700.000000
s hg38.chrX_KI270880v1_alt        143850 11 +    284869 CCTATCCCGGC
s panTro5.chrX                    297407 11 + 155549662 CCTATCCCGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45343 11 -    177848 CCTATCCCGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201627 11 +    417917 CCTGTCCGGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268328 11 + 180051392 CCTATCCCGGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            5295 11 -     71016 CCTATCCTGGC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          169102 11 -   1025902 CCTATCCCGGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        141886 11 -    811265 CCTATCCCGGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          100191 11 -    350446 CCTATCCCGGC
i manLeu1.NW_012108508v1       I 208 C 0
s colAng1.NW_012115411v1          254513 11 +   1230721 CCTATCCCGGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                194221 11 +    465904 CCTTTCCCGGC
i saiBol1.JH378345             C 0 I 1835
s otoGar3.GL873584                204019 10 +  11138919 CCTCTCCTAG-
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=143225.000000
s hg38.chrX_KI270880v1_alt        143861 44 +    284869 AAAGCTGA-CCCCGAGAATGCCCGGGTCAC--AAGCCCAGGTGGACA
s panTro5.chrX                    297418 44 + 155549662 AAAGCTGA-CCCCGAGAATGCCCGGGTCAC--AAGCCCACGTGGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45354 44 -    177848 AAAGCTGA-CCCCGAGAATGCCCGGGTCAC--AAGCCCACGTGGACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201638 42 +    417917 AAAGCTG--CCCCGAGAATGCCCGGGTCA---AAGCCCACGTGGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268339 44 + 180051392 AAACCTGA-CCCCAAGAATGCCCGGGTCAG--TCGCCCCCGTGGACA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            5306 44 -     71016 AAACCTGA-CCCCAAGAATGCCCGGGTCAG--TCGCCCCCGTGGACA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          169113 44 -   1025902 AAACCTGA-CCCCAAGAATGCCCGGGTCAG--TCGCCCCCGTGGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        141897 44 -    811265 AAACCTGA-CCCCAAGAATGCCCGGGTCAG--TCGCCCCCGTGGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          100202 44 -    350446 AAACCTGA-CCCCAAGAATGCCCGGGTCAG--TCGCCCCCGTGGACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          254524 45 +   1230721 AAACCTGATCCCCAGGAACGCCCGGGTCAG--TAGCCCCCGTGGACA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                204029 40 +  11138919 ------GG-CCATGGGGTCAGCGCAGTTGGGCAGGTCCATGGGGACA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                194232 1835 +    465904 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=87104.000000
s hg38.chrX_KI270880v1_alt        143905 22 +    284869 GTGTCT---CCTTGTGCCTCGGAAG
s panTro5.chrX                    297462 22 + 155549662 GTGTCT---CCTTGTGCCTCGGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45398 22 -    177848 GTGTCT---CCTTGTGCCTCGGAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201680 22 +    417917 GTGTGT---CCTTGTGCCTCGGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268383 22 + 180051392 CCGTCT---CCTTGTCCCTCGGAAG
i rheMac8.chr6                 C 0 I 52
s macFas5.chrUn_KE146020            5350 22 -     71016 CCGTCT---CCTTGTCCCTCGGAAG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          169157 22 -   1025902 CCGTCT---CCTTGTCCCTCGGAAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        141941 22 -    811265 ACGTCT---CCTTGTCCCTCGGAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          100246 22 -    350446 CCGTCT---CCTTGTCCCTTGGAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          254569 22 +   1230721 GCGTCT---CCTCGTTCCTCGGAAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196067 25 +    465904 GCGTCTCCCCCTGCTTCCTCAGAGG
i saiBol1.JH378345             I 1835 C 0
s otoGar3.GL873584                204069 22 +  11138919 GTGTCT---CCCCACTTGCCGGGGG
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=75479.000000
s hg38.chrX_KI270880v1_alt        143927 26 +    284869 AGAATTCTGCATTAGGAAGGAATCCA
s panTro5.chrX                    297484 26 + 155549662 AGAATTCTGCATTAGGAAGGAATCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45420 26 -    177848 AGAATTCTGCATTAGGAAGGAATCCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201702 26 +    417917 AGAATTCTGCATTAGGAAGGAATCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5372  7 -     71016 -------------------GAATCCA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          169179 26 -   1025902 AGGACTCTGCACGAGGAAGGAATCCA
i cerAty1.NW_012001098v1       C 0 I 344
s chlSab2.chrUn_KE147541v1        141963 26 -    811265 AGGATTCTGCACGAGGAAGGAATCCA
i chlSab2.chrUn_KE147541v1     C 0 I 360
s manLeu1.NW_012108508v1          100268 26 -    350446 AGGACTCTCCACGAGGAAGGAATCCA
i manLeu1.NW_012108508v1       C 0 I 347
s colAng1.NW_012115411v1          254591 26 +   1230721 AGGATTCTGCACGAGGAAGGCATCCA
i colAng1.NW_012115411v1       C 0 I 73
s saiBol1.JH378345                196092 26 +    465904 AGAGTTCCACGTTGGGAGGGACCCCA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204091 26 +  11138919 AAAATTCCACATTAGAAATGAGTCTG
i otoGar3.GL873584             C 0 C 0
e rheMac8.chr6                 143268405 52 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=11871.000000
s hg38.chrX_KI270880v1_alt        143953 45 +    284869 GGGGGAATGGGGA--GAAAAGGCCCGAGA------TACGTGAGCAGAGGTGAG
s panTro5.chrX                    297510 43 + 155549662 AGGGGAATGGGGA--GAAAAGGCCCGAGA------TACGTGAGCAGAGGT--G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45446 43 -    177848 AGGGGAATGGGGA--GAAAAGGCCCGAGA------TACGTGAGCAGAGGT--G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201728 43 +    417917 AGGGGAATGGGGA--GAGAAGGCCCGAGA------TACGTGAGCAGAGGT--G
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5379  2 -     71016 ------------------AA---------------------------------
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                196118 45 +    465904 AGACGAATGGGGAAGAAAAAGACCTTAGAGAGACTCACGTGGGCA--------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204117 41 +  11138919 AGAAGAATGGGAA--AGAGAGACCTAAAG------TATATTAAGGTAGG----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100294 347 -    350446 I
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e cerAty1.NW_012001098v1          169205 344 -   1025902 I
e colAng1.NW_012115411v1          254617 73 +   1230721 I
e rheMac8.chr6                 143268405 52 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=100127.000000
s hg38.chrX_KI270880v1_alt        143998 68 +    284869 AGCCGTGCCAGGGCTGAGCCACGCTTCAGGAGAGACCAGCTATGTCTCTCTCTGTGTTGG---GAGCCGTT
s panTro5.chrX                    297553 68 + 155549662 AGCCGTGCCAGGGCTGAGCCACGCTTCAGGAGAGACCAGCTATGTCTCTCTCTGTGTTGG---GAGCCGTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45489 68 -    177848 AGCCGTGCCAGGGCTGAGCCACGCTTCAGGAGAGACCAGCTATGTCTCTCTCTGTGTTGG---GAGCCGTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201771 49 +    417917 A-------------------ACGCTTCAGGAGAGACCAGCTATGTCTCTCTCTGTGTTGG---GAGCCGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268457 68 + 180051392 AGCCGTGCCGGGACCGAGCCGGGCTGCAGGAGAGGCCACGTACGTCTCTGTCGGTGTTGG---GAGCCGTT
i rheMac8.chr6                 I 52 I 235
s macFas5.chrUn_KE146020            5381 68 -     71016 AGCGATTCCGGGACCGAGCCGGGCTGCAGGAGAGGCCACGTACGTCTCTGTCGGTGTTGG---GAGCCGTT
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                196163 68 +    465904 AGCCATGCCACGGCTGAGCCACGCTCAGAAACAGGCCACTCACGGCTCTGTCTGTGCTGG---GCGCTGTT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204158 69 +  11138919 CACGACGGCGGGGCTGAG--GAGCTCGCAGAGAGGCCAGTTATGTCTCTCTCTGTCTTGGTTAGAGCCGTT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100294 347 -    350446 I
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e cerAty1.NW_012001098v1          169205 344 -   1025902 I
e colAng1.NW_012115411v1          254617 73 +   1230721 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=14053.000000
s hg38.chrX_KI270880v1_alt        144066 20 +    284869 GGGTAAAGCGGGGACTTCTG
s panTro5.chrX                    297621 20 + 155549662 GGGTAAAGCGGGGACTTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45557 20 -    177848 GGGTAAAGCGGGGACTTCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201820 20 +    417917 GGGTAAAGCGGGGACTTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5449 19 -     71016 CGGTCGC-CGAGAACTTCAG
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                196231 18 +    465904 --TGGAACCTGGAACTTCAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204227 17 +  11138919 TGGTAGCTCG---ACTTCAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100294 347 -    350446 I
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e cerAty1.NW_012001098v1          169205 344 -   1025902 I
e colAng1.NW_012115411v1          254617 73 +   1230721 I
e rheMac8.chr6                 143268525 235 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=137889.000000
s hg38.chrX_KI270880v1_alt        144086 77 +    284869 GGTGAGCCAACATTACAGACTTATATGGGAATTTAA-GGCTCGGTTAAATATG-CCCCTCAAAAAAGTTTCCTGACTTT-
s panTro5.chrX                    297641 76 + 155549662 GGTGAGCCAACATTACAGACTTATTTGGGGATTTAA-GGCTCGGTTAAATATG-CCCCTCAAAAAAGTTTCCTGAC-TT-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45577 76 -    177848 GGTGAGCCAACATTACAGACTTATTTGGGGATTTAA-GGCTCGGTTAAATATG-CCCCTCAAAAAAGTTTCCTGAG-TT-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201840 78 +    417917 GGTGAGCCAACATTACAGACTTATTTGGGGATTTAAGGGCTCAGTTAAATATG-CCCCTCAAAAAAGTTTCCTGACTTT-
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5468 77 -     71016 GGTGAGCTCCCATGACAGACTTATCTGGGGATTGAA-GGCGTCGTGAAATATGCCCCCTCGAAAAAGTTTCCTGAG-TT-
i macFas5.chrUn_KE146020       C 0 C 0
s colAng1.NW_012115411v1          254690 76 +   1230721 GGTGAGCTCACATTACAGAGTTATCTGGGGATTTAA-GGCTCCGTTAAAGATG-CCCGTCCAAAAAGTTTCCCGAC-TT-
i colAng1.NW_012115411v1       I 73 I 135
s saiBol1.JH378345                196249 75 +    465904 GGAGAGCTCACATTACAGACTCATTCGGGGATTTAA-GGCTCCGTTAAATATG-CCCCTC-AAAAAGTTTGCAGAG-TT-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204244 76 +  11138919 GCTGAGGCAACATTACAGACTTATTTGGG-ATTTAA-GGCTTAGTTAAATATG-CCCCTCAAAAAAGTTTTCTGAC-TTT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100294 347 -    350446 I
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e cerAty1.NW_012001098v1          169205 344 -   1025902 I
e rheMac8.chr6                 143268525 235 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=99913.000000
s hg38.chrX_KI270880v1_alt        144163 115 +    284869 TTTTTGATACGCCAGTTTCATTATCAGG----GGGCTCATCA-GCC--GGGGACGCGGTGCAGGACGGATGGAAGCCGTGGGCCGTGTCAACTCTACAGGG--CTGTATTTC----TTTTTTTTTTTC
s panTro5.chrX                    297717 119 + 155549662 TTTTTGATACGCGAGTTTCATTATCAGG----GGGCTCATCA-GCC--GGGGACGCGGTGCAGGACGGATGGAAGCCGTGGGCCGTGTCAACTCTACAGGG--CTGTAtttctttttttttttttttC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45653 113 -    177848 TTTTTGATACGCGAGTTTCATTATCAGG----GGGCTCATCA-GCC--GGGGACGCGGTGCAGGACGGATGGAAGCCGTGGGCCGTGTCAACTCTACAGGG--CTGTATT------TTTTTTTTTTTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          201918 109 +    417917 TTTTTGATATGC-AGTTTCATTATCA-G----GGGCTCATCA-GCC--GGGGACGCGGTACAGGA-GGATGGAAG-CGTGGGCCGTGTCAACTCTACAGGG--CTGTATT------TTTTTTTTTTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5545 121 -     71016 TGTTTGATACGCGACTTTCCTGATCAGGCTTTTGCTTCATCA-GCCGGGGGGACGCGGGGCGGGGCGGGTGGAAGCCGTGGCTCGTGTGGGCTCTAGAGGGGCCTGTATT------Ttgtgtgtgtgt
i macFas5.chrUn_KE146020       C 0 I 2
s saiBol1.JH378345                196324  84 +    465904 TTTTTGATACACGACTTTCGTTATCAGG----GTGCTAATCA-GCC--------------------GGGCGAAGGTGCTGG--CGTGTCGGCTCCACGGGG--CCGTATT------TTC---------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204320 102 +  11138919 --TTTGATACGCTACTTTTGTTATCAGG----GTATTAATAAGGCC--CGGGATGAGGGTCGGGGCGGAAGGAAGCTGTTC-CCGTGTCAATTACACGGGG--CTGTATT------TTT---------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100294 347 -    350446 I
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e cerAty1.NW_012001098v1          169205 344 -   1025902 I
e colAng1.NW_012115411v1          254766 135 +   1230721 I
e rheMac8.chr6                 143268525 235 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=-534.000000
s hg38.chrX_KI270880v1_alt        144278 2 +    284869 G-T
s panTro5.chrX                    297836 2 + 155549662 G-T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45766 3 -    177848 GTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202027 2 +    417917 A-T
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5668 2 -     71016 g-t
i macFas5.chrUn_KE146020       I 2 I 26
s cerAty1.NW_012001098v1          169549 2 -   1025902 g-t
i cerAty1.NW_012001098v1       I 344 C 0
s manLeu1.NW_012108508v1          100641 2 -    350446 g-t
i manLeu1.NW_012108508v1       I 347 C 0
s colAng1.NW_012115411v1          254901 2 +   1230721 g-t
i colAng1.NW_012115411v1       I 135 C 0
s saiBol1.JH378345                196408 2 +    465904 -CT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204422 2 +  11138919 G-T
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I
e rheMac8.chr6                 143268525 235 + 180051392 I
e macNem1.NW_012017243v1          253349 1092 +  25972781 I

a score=23331.000000
s hg38.chrX_KI270880v1_alt        144280 4 +    284869 GCTC
s panTro5.chrX                    297838 4 + 155549662 GCTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45769 4 -    177848 GCTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202029 4 +    417917 GCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268760 4 + 180051392 GCTC
i rheMac8.chr6                 I 235 C 0
s macFas5.chrUn_KE146020            5696 4 -     71016 GCTC
i macFas5.chrUn_KE146020       I 26 C 0
s macNem1.NW_012017243v1          254441 4 +  25972781 GCTC
i macNem1.NW_012017243v1       I 1092 C 0
s cerAty1.NW_012001098v1          169551 4 -   1025902 gCTC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          100643 4 -    350446 gCTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          254903 4 +   1230721 gCTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196410 4 +    465904 GCTG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204424 4 +  11138919 GCTC
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        141989 360 -    811265 I

a score=1381135.000000
s hg38.chrX_KI270880v1_alt        144284 225 +    284869 ATTACGATTCTTGGATGTGTGTAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAATGATAGGTACTGTGTGGGAGGAGATGACAGCCGT-ACCAGCGCGCGTTGCCAGAGTGAGAGTCCCTCGGGGCAATGATTTAATGCCCCCAGTCAGCCGGGCCTGTCAGCTTCGGAGGCCAAATTATGACACATCATGTCGACGACCGGTCCACAC
s panTro5.chrX                    297842 225 + 155549662 ATTACGATTCTTGGATGTGGGTAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAATGATAGGTAGTGTGTGGGAGGAGATGACAGCCGT-ACCAGCGCGCGTTGCCAGAGTGAGAGTCCCTCGGGGCAATGATTTAATGCCCCCAGTCAGCCAGGCCTGTCAGCATCGGAGGCCAAATTATGACACATCATGTCGACGACCGGTCCACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45773 225 -    177848 ATTACGATTCTTGGATGTGTGTAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAATGATAGGTAGTGTGTGGGAGGAGATGACAGCCGT-ACCAGCGCGCGTTGCCAGAGTGAGAGTCCCTCGGGGCAATGATTTAATGCCCCCAGTCAGCCAGGCCTGTCAGCATCGGAGGCCAAATTATGACACATCATGTCGACGATTGGTCCACAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202033 222 +    417917 ATTACGATTCTTGGATGTGGGTAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTC-AAAATGATAGGTACTGTGTGGGAGGAGATGACAGCGGT-A-CAGCGCGGGTTGCCAGAGTGAGAGTCCCTCGGGGCAATGATTTAATG-CCCCAGTCAGCCAGGCCTGTCAGCATCGGAGGCCAAATTATGACACATCATGTCGACGATCGGTCCACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268764 224 + 180051392 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCGTGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTACATCGACAGTCAACCCACAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            5700 224 -     71016 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCATGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTACATCGACAGTCAACCCACAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          254445 224 +  25972781 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCGTGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTACATCGACAGTCAACCCACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          169555 224 -   1025902 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCGTGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTATATCGACAGTCAACCCACAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        142349 224 -    811265 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCGTGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTACATCGACAGTCAACCCACAC
i chlSab2.chrUn_KE147541v1     I 360 C 0
s manLeu1.NW_012108508v1          100647 224 -    350446 ATTACTATTCTTGGATGTCTATAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAGTGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGTCCGTGTTGCGAGACTGAGAGTCCCTCGAGGCGATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTATATCGACAGTCAACCTACGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          254907 224 +   1230721 ATTACTATTCTTGGATGTCTGTAATTTACATCTAAATGCACTGACTAATTTTGATCCAATCATGTCAAAAATGATAGGTACTGTGTGGGAGGAGATGACAGCTGT-ACCAGGCCGTGTTGCCAGAGTGAGCGTCCCTCGAGGCAATGATTTAATA-CCCCAGTCAGCCAGGCCTGTCAGAATCGGAGGCCAAATTATGACACATTACATCGACGATCAACCCACAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196414 226 +    465904 ATTATCATTCTTGGATGTGTCTCATTTACATCTAAATGCACTGACTAATTTTGATCCGATCACGTCAAAAGTGATAGGTAGTTTGTGGAAGGAGATGACAGCCGTGAGCGGAGCGCCTTGCCGGAGCGAGACTCCCTTGGGGCGATGATTTAATGTCCCCAGTCAGCCGGGCCTGTCACAATCGAAGCCCAGATTATGACACATTATGTGCACAACTGGCCCGCAC
i saiBol1.JH378345             C 0 I 73
s otoGar3.GL873584                204428 224 +  11138919 ATTATTATTCTTGGATGTCCCTAATTTACATCTAAATGTACTGACTAATTTTGATCCAATCATGTCAGAAATGATAGGTGCTGTATGGGAGGAGATGACAGCCCT-ACCAGCAGGGATTGCCAGAGTGAGAGTCCCTCGGGGCAATGATTTAATG-CCCGAGTCAGGCAGGGCTGTCAGAATCGGAGGCCAAATTATGACACATTATGCCGGCAATGGGCCCACAC
i otoGar3.GL873584             C 0 C 0

a score=86666.000000
s hg38.chrX_KI270880v1_alt        144509 18 +    284869 GGAGGCTGC-GGTGGGGGG
s panTro5.chrX                    298067 18 + 155549662 GGAGGCTGC-GGTGGGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     45998 18 -    177848 GGAGGCTGC-GGTGGGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202255 19 +    417917 GGAGGCTGCAGGTGGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143268988 18 + 180051392 GGAGGTTGC-GGTGAGGGG
i rheMac8.chr6                 C 0 I 87
s macFas5.chrUn_KE146020            5924 18 -     71016 GGAGGTTGC-GGTGAGGGG
i macFas5.chrUn_KE146020       C 0 I 3
s macNem1.NW_012017243v1          254669 18 +  25972781 GGAGGTTGC-GGTGAGGGG
i macNem1.NW_012017243v1       C 0 I 87
s cerAty1.NW_012001098v1          169779 18 -   1025902 GGAGGTTGC-GGTGGGGGG
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1        142573 18 -    811265 GGAGGTTGC-GGTGGGTGG
i chlSab2.chrUn_KE147541v1     C 0 I 4
s manLeu1.NW_012108508v1          100871 18 -    350446 GGAGGTTGC-GGTGGGGGG
i manLeu1.NW_012108508v1       C 0 I 3870
s colAng1.NW_012115411v1          255131 19 +   1230721 GGAGGCTGCTGGTGGGGGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                204652 16 +  11138919 GGAGGCTGC--GTGGGGG-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                196640 73 +    465904 I

a score=41411.000000
s hg38.chrX_KI270880v1_alt        144527 20 +    284869 AGCCCT--GGTTCACCCAGCAC----------------------------
s panTro5.chrX                    298085 20 + 155549662 AGCCCT--GGTTCACCCAGCAC----------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46016 20 -    177848 AGCCCT--GGTTCACCCAGCAC----------------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202274 20 +    417917 AGCCGT--GGTTCACCCAGCAC----------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            5945 20 -     71016 GGCCCC--GGTTCACCCGGCAC----------------------------
i macFas5.chrUn_KE146020       I 3 I 35
s cerAty1.NW_012001098v1          169800 20 -   1025902 GGCCCC--GGTTCACCCAGCAC----------------------------
i cerAty1.NW_012001098v1       I 3 I 64
s chlSab2.chrUn_KE147541v1        142595 20 -    811265 GGCCCT--GGTTCACCCGGCAC----------------------------
i chlSab2.chrUn_KE147541v1     I 4 I 476
s colAng1.NW_012115411v1          255150 20 +   1230721 AGCCCT--GGTTCACCCAGCAC----------------------------
i colAng1.NW_012115411v1       C 0 I 580
s otoGar3.GL873584                204668 50 +  11138919 AGCCGCGAGGTGAACCCGGCAAGGCCCCCACCTGGAGCGTCTCCCATCTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                196640 73 +    465904 I
e rheMac8.chr6                 143269006 87 + 180051392 I
e macNem1.NW_012017243v1          254687 87 +  25972781 I

a score=16097.000000
s hg38.chrX_KI270880v1_alt        144547 19 +    284869 CGTCCTGGCCGACCC---------CCGG
s panTro5.chrX                    298105 28 + 155549662 CGTCCCGGCCGACCCCCGCCCCCTCCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46036 28 -    177848 CGTCCCGGCTGACCCCCGCCCCCTCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202294 27 +    417917 CGTCCCGGCCGACCC-CGCCCCCTCCGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            6000 28 -     71016 CGTCCCGGCCGGCCCTCACCTCCTCCGG
i macFas5.chrUn_KE146020       I 35 I 1
s otoGar3.GL873584                204718 19 +  11138919 -CTCCCCGCCAGCCC-------CTCAG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                196640 73 +    465904 I
e chlSab2.chrUn_KE147541v1        142615 476 -    811265 I
e cerAty1.NW_012001098v1          169820 64 -   1025902 I
e colAng1.NW_012115411v1          255170 580 +   1230721 I
e rheMac8.chr6                 143269006 87 + 180051392 I
e macNem1.NW_012017243v1          254687 87 +  25972781 I

a score=84899.000000
s hg38.chrX_KI270880v1_alt        144566 27 +    284869 CC-CCGGCTGCCGCCCCGTGCCCCGTCA
s panTro5.chrX                    298133 27 + 155549662 CC-CCTGCTGCCGCCCCGTGCCCCGTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46064 27 -    177848 CC-TCGGCAGCCGCCCCGTGCCCCGTCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202321 26 +    417917 CCGCCGGCAGC--GCCCGTGCCCCGTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269093 27 + 180051392 CC-CCGGCAGCCGCCCCCTGCCCCGTCA
i rheMac8.chr6                 I 87 C 0
s macFas5.chrUn_KE146020            6029 27 -     71016 AC-CCGGCAGCCGCCCCCTGCCCCGTCA
i macFas5.chrUn_KE146020       I 1 C 0
s macNem1.NW_012017243v1          254774 27 +  25972781 CC-CCGGCAGCCGCCCCCTGCCCCGTCA
i macNem1.NW_012017243v1       I 87 C 0
s cerAty1.NW_012001098v1          169884 27 -   1025902 CC-CCGGCAGCCGCCCCCTGCCCCGTCA
i cerAty1.NW_012001098v1       I 64 C 0
s colAng1.NW_012115411v1          255750 27 +   1230721 CC-CCGGCAGCCGCCCCGTGCCCCGTCA
i colAng1.NW_012115411v1       I 580 C 0
s otoGar3.GL873584                204737 27 +  11138919 CC-CCGCCGGCCACTCTGGGCCCTGTCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                196640 73 +    465904 I
e chlSab2.chrUn_KE147541v1        142615 476 -    811265 I

a score=13755.000000
s hg38.chrX_KI270880v1_alt        144593 3 +    284869 CAC
s panTro5.chrX                    298160 3 + 155549662 CAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46091 3 -    177848 CAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202347 3 +    417917 CAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269120 3 + 180051392 CAC
i rheMac8.chr6                 C 0 I 174
s macFas5.chrUn_KE146020            6056 3 -     71016 CAC
i macFas5.chrUn_KE146020       C 0 I 25
s macNem1.NW_012017243v1          254801 3 +  25972781 CAC
i macNem1.NW_012017243v1       C 0 I 33
s cerAty1.NW_012001098v1          169911 3 -   1025902 CAC
i cerAty1.NW_012001098v1       C 0 I 25
s colAng1.NW_012115411v1          255777 3 +   1230721 CAC
i colAng1.NW_012115411v1       C 0 I 25
s saiBol1.JH378345                196713 3 +    465904 CAC
i saiBol1.JH378345             I 73 C 0
s otoGar3.GL873584                204764 3 +  11138919 GAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        142615 476 -    811265 I

a score=6321.000000
s hg38.chrX_KI270880v1_alt        144596  8 +    284869 ---------------------ACGCAAGA------
s panTro5.chrX                    298163  8 + 155549662 ---------------------ACGCAAGA------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46094  8 -    177848 ---------------------ACGCAAGA------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202350  8 +    417917 ---------------------ACGCAAGA------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            6084  8 -     71016 ---------------------ACACGAGG------
i macFas5.chrUn_KE146020       I 25 C 0
s cerAty1.NW_012001098v1          169939  8 -   1025902 ---------------------ACGCGAGG------
i cerAty1.NW_012001098v1       I 25 C 0
s colAng1.NW_012115411v1          255805  8 +   1230721 ---------------------ACGCGAGG------
i colAng1.NW_012115411v1       I 25 C 0
s saiBol1.JH378345                196716  8 +    465904 ---------------------ACGTGAGG------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204767 35 +  11138919 GCATTGCTGCCGAGGTTCTAATCACTGGGCAGAGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        142615 476 -    811265 I
e rheMac8.chr6                 143269123 174 + 180051392 I
e macNem1.NW_012017243v1          254804 33 +  25972781 I

a score=11169.000000
s hg38.chrX_KI270880v1_alt        144604 3 +    284869 TGC
s panTro5.chrX                    298171 3 + 155549662 TGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46102 3 -    177848 TGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202358 3 +    417917 TGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            6092 3 -     71016 TGC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          254837 3 +  25972781 TGC
i macNem1.NW_012017243v1       I 33 C 0
s cerAty1.NW_012001098v1          169947 3 -   1025902 TGC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          255813 3 +   1230721 TGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196724 3 +    465904 TGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204802 3 +  11138919 TGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        142615 476 -    811265 I
e rheMac8.chr6                 143269123 174 + 180051392 I

a score=127027.000000
s hg38.chrX_KI270880v1_alt        144607 29 +    284869 --AGAGTGGGGAGAAATGATGCGCT-----------------AACCCC
s panTro5.chrX                    298174 29 + 155549662 --AGAGTGGGGAGAAATGATGCGCT-----------------AACCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46105 29 -    177848 --AGAGTGGGGAGAAATGATGCGCT-----------------AACCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202361 29 +    417917 --AGAGTGGGGAGAAATGATGCGCT-----------------AAGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269297 29 + 180051392 --AGAGTGGGGAGAAGCGACGCGCC-----------------AACCCC
i rheMac8.chr6                 I 174 C 0
s macFas5.chrUn_KE146020            6095 29 -     71016 --AGAGTGGGGAGAAACGACGCGCT-----------------AACCCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          254840 29 +  25972781 --AGAGTGGGGAGAAGCGACGCGCT-----------------AACCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          169950 29 -   1025902 --AGAGTGGGGAGAAACGACGCGCT-----------------AACCCC
i cerAty1.NW_012001098v1       C 0 I 285
s chlSab2.chrUn_KE147541v1        143091 29 -    811265 --AGAGTGCGGAGAAACGACGCGCT-----------------AACCCC
i chlSab2.chrUn_KE147541v1     I 476 C 0
s colAng1.NW_012115411v1          255816 29 +   1230721 --AGAGTGGGGAGGAACGACGTGCT-----------------AACCCC
i colAng1.NW_012115411v1       C 0 I 27
s saiBol1.JH378345                196727 29 +    465904 --AGAGCGGGGTCAAACGGCGCCCT-----------------GACCCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                204805 48 +  11138919 AGATGGGGTGGAAAGATGATGCCCCACTGAGGTCTGCTCACAAGCCCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I

a score=4253.000000
s hg38.chrX_KI270880v1_alt        144636 9 +    284869 -CCTGTAAAA-
s panTro5.chrX                    298203 7 + 155549662 -CCTGT--AA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46134 9 -    177848 -CCTGTAAAA-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202390 8 +    417917 -CCTGT-AAA-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269326 7 + 180051392 -ACTTT--AA-
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            6124 7 -     71016 -ACTTT--AA-
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          254869 7 +  25972781 -ACTTT--AA-
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        143120 7 -    811265 -ACTTT--AA-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          255872 7 +   1230721 -ACTTT--AA-
i colAng1.NW_012115411v1       I 27 C 0
s saiBol1.JH378345                196756 9 +    465904 -CCTTTACAA-
i saiBol1.JH378345             C 0 I 2
s otoGar3.GL873584                204853 9 +  11138919 CCCTTT--AGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e cerAty1.NW_012001098v1          169979 285 -   1025902 I

a score=140602.000000
s hg38.chrX_KI270880v1_alt        144645 35 +    284869 GAGTCATTTGCATCTGTA---TTTTTTACTCCAGCAAG
s panTro5.chrX                    298210 35 + 155549662 GAGTCATTTGCATCTGTA---TTTTTTACTCCAGCAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46143 35 -    177848 GAGTCATTTGCATCTGTA---TTTTTTACTCCAGCAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202398 35 +    417917 GAGTCATTTGCAGCTGTA---TTTTTTACTCCAGCAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269333 35 + 180051392 GAGTCATTTGCGTGTGCG---TTTTTCACTCCGGCAAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            6131 35 -     71016 GAGTCCTTTGCGTGTGTG---TTTTTCACTCCGGCAAG
i macFas5.chrUn_KE146020       C 0 I 138
s macNem1.NW_012017243v1          254876 35 +  25972781 GAGTCATTTGCGTGTGTG---TTTTTCACTCCGGCAAG
i macNem1.NW_012017243v1       C 0 I 69
s cerAty1.NW_012001098v1          170264 35 -   1025902 GAGTCATTTGCGTGTGTG---TTTTTCACTCCGGCAAC
i cerAty1.NW_012001098v1       I 285 C 0
s chlSab2.chrUn_KE147541v1        143127 36 -    811265 GAGTCATTTGCGTGTGTG--TTTTTTCACTCCGGCAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          255879 35 +   1230721 GAGTCATTTGCATGTGGG---TTTTTCACTCCAGCAGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196767 35 +    465904 GGGTCGTTTGCATTTCTA---TTTTCTGTCCCAGCCAC
i saiBol1.JH378345             I 2 C 0
s otoGar3.GL873584                204862 38 +  11138919 AACTCATTTACATTTTTTTTTTTTTTTACTCCATAAAC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I

a score=277696.000000
s hg38.chrX_KI270880v1_alt        144680  85 +    284869 GGCATGTCAGG-TGTTTGCGGGAAGGGCAGGCTGGA---CGGCCTCCATGCA---------------------------GCgtgagcgtgtccgcgtgtgtgtgtgcacgt--gtgtc
s panTro5.chrX                    298245  85 + 155549662 GGCACGTCAGG-TGTTTGCGGGAAAGGCAGGCTGGA---CGGTCTCCATGCA---------------------------GCGTGAGCGTGTCCGCGTGTGTGTGTGCACGT--GTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46178  85 -    177848 GGCACATCAGG-TGTTTGCAGGAAGGGCAGGCTGGA---CGGCCTCCATGCA---------------------------GCgtgagcgtgtccgcgtgtgtgtgtgcacgt--ctgtc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202433  85 +    417917 GGCACGTCAGGTTGTTTGC-GGAAGGGCAGGCTGGA---CGGCCTCCATGCA---------------------------GCgtgagcgtgtccgcgtgtgtgtgtgcacgt--gtgtc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269368  90 + 180051392 AGCGTGTGAGG-TGTTTGCAGGAAGGGCGGGCCGGAGTTCCGCCGCCGTGCAGC-------------------------GCgtgggtgtgtccgtatgtgcgtgtgcacac--gtgtt
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            6304  90 -     71016 AGCGTGTGAGG-TGTTTGCAGGAAGGGCGGGCCGGAGTTCCGCCGCCGTGCAGC-------------------------GCgtgggtgtgtccgtatgtgcgtgtgcacac--gtgtt
i macFas5.chrUn_KE146020       I 138 C 0
s macNem1.NW_012017243v1          254980  98 +  25972781 AGCGTGTGAGG-TGTTTGCAGGAAGGGCGGGCCGGAGTTCCGCCGCCGTGCAGCGCG-AGGgt----------------gcgtgggtgtgtccgtatgtgcgtgtgcacac--gtgtt
i macNem1.NW_012017243v1       I 69 C 0
s cerAty1.NW_012001098v1          170299 100 -   1025902 AGCGTGTCAGG-GGTTTGCAGGAAGGGCGGGCCGGAGTTCCGCCGCCGTGCAGCGTG-AGGGT----------------GCGTGGGTGTGTCCGTATGTGCGTGTGCACTCGTGTGTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        143163  98 -    811265 AGCGTGTCAGG-TGTTTGCAGGAAGGGCAGGCCGGAGTTCTGCCGCCGTGCAGCgtg-agggt----------------gcgtgggtgtgtccctatgtgcgtgtgcgcac--gtgtt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          255914  95 +   1230721 AGCGTGTCCGG-TGTTTGCAGGAAGGGCGGGCCGGG---CTGCCGCCGTGCAGCgtg-agggt----------------gcgtgggtgtgtccgtatgtgtgtgcgcacgt--gtgtt
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196802  75 +    465904 GGCTCCTCAGC-TGTTTGCAGGAA------GCTGGA---TGGCTGCTATGCA---------------------------gtgtgggcgtgtgtggctgtgtctgtg----t--gtgtc
i saiBol1.JH378345             C 0 I 9
s otoGar3.GL873584                204900 104 +  11138919 TTCATGTCAGG-TGTTTGCTGAAAGGACAGGGTAGA---TTCCTTCCACAGAAAGGGCAGGGTAGATCCCTTCCACAGAGCAtgtgtgtgtgtgtctgtgcgtgtgca----------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I

a score=71213.000000
s hg38.chrX_KI270880v1_alt        144765 27 +    284869 cacatgtgtgtgtggtgtctgc--gtgcc
s panTro5.chrX                    298330 25 + 155549662 CAC--GTGTGTGTGGTGTCTGC--GTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46263 29 -    177848 cacatgtgtgtgtggtgtctgcgtgtgtc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202518 27 +    417917 cacgtgtgtgtgtggtgtctgc--gtgtg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143269458 27 + 180051392 cgcaggtgtgcgtggtgtctgc--gtgtg
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            6394 27 -     71016 cgcaggtgtgcgtggtgtctgc--gtgtg
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          255078 27 +  25972781 cgcaggtgtgcgtggtgtctgc--gtgtg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          170399 19 -   1025902 CACAGGTGTGCGTA----------GTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        143261 27 -    811265 cgcaggtgtgcgtggtgtctgc--gtgtg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          256009 27 +   1230721 cgcaggtgtgcgtggtgtctgc--gtgcg
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                205004 12 +  11138919 tgcatgtgtgtg-----------------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                196877  9 +    465904 I

a score=192944.000000
s hg38.chrX_KI270880v1_alt        144792 44 +    284869 tctgtgtgtgtccgtgtgtgcgcacgcgcccgtgtgtgtgcatc
s panTro5.chrX                    298355 40 + 155549662 TC----TGTGTCCGTGTGTGCGCACGTGCCCGTGTGTGTGCATC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46292 44 -    177848 tctgtgtgtgtccgtgtgtgcgcacgtgcccgtgtgtgtgcatc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          202545 37 +    417917 tc------tgttcgtgtgtg-gcacgtgcccgtgtgtgtgcatc
i gorGor5.CYUI01015925v1       C 0 I 1187
s rheMac8.chr6                 143269485 44 + 180051392 tctatgtgggtccgtgtgtgcacacgcgcccgtgtgtgtgcatc
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            6421 44 -     71016 tctatgtgggtccgtgtgtgcacacgcgcccgtgtgtgtgcatc
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          255105 44 +  25972781 tctatgtgggtccgtgtgtgcacacgcgcccgtgtgtgtgcatc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          170418 44 -   1025902 TCTATGTGGGTCCGTGTGTGCACACGCGCCCGTGTGTGTGCATC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        143288 44 -    811265 tctatgtgggtccgtgtgtgcacacgtgcccgtgtgtgtgcatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          256036 44 +   1230721 tctatgtgggtccgtgtgtgcacacgtgcccgtgtgtgtgcacc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                196886 44 +    465904 tctgtgtgtgtccatgtgggcacacgtgcctgtatctgtgcatt
i saiBol1.JH378345             I 9 C 0
s otoGar3.GL873584                205016 37 +  11138919 tctgtgtgtgtctaagtgtg------tgtctctgtgtgtgcat-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I

a score=86625.000000
s hg38.chrX_KI270880v1_alt        144836 24 +    284869 tgtgtgtggcgtcagcatgtgtc--t
s panTro5.chrX                    298395 23 + 155549662 TGTGTGTGGCGTCAGCATGTGTC---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46336 26 -    177848 tgtgtgtggtgtcagcatgtgtctct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143269529 24 + 180051392 tgtgtgtggcatctgcatgtgtc--t
i rheMac8.chr6                 C 0 I 2
s macFas5.chrUn_KE146020            6465 24 -     71016 tgtgtgtggcgtctgcatgtgtc--t
i macFas5.chrUn_KE146020       C 0 I 2
s macNem1.NW_012017243v1          255149 24 +  25972781 tgtgtgtggcgtctgcatgtgtc--t
i macNem1.NW_012017243v1       C 0 I 2
s cerAty1.NW_012001098v1          170462 24 -   1025902 TGTGTGTGGCGTCTGCATGTGTC--T
i cerAty1.NW_012001098v1       C 0 I 2967
s chlSab2.chrUn_KE147541v1        143332 24 -    811265 cgtgtgtggcgtctgcatgtgtc--t
i chlSab2.chrUn_KE147541v1     C 0 I 744
s colAng1.NW_012115411v1          256080 24 +   1230721 tgtgtgtggcgtctgcatgtgtc--t
i colAng1.NW_012115411v1       C 0 I 11198
s saiBol1.JH378345                196930 24 +    465904 ggtgtgtggtgtctgcatgtgtc--t
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                205053 10 +  11138919 --------------gcatgtgtg--t
i otoGar3.GL873584             C 0 I 61
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=199715.000000
s hg38.chrX_KI270880v1_alt        144860 165 +    284869 atgtgtgtccatgtgtgtatgta----------------tg----tgtgcatgcatgcacctgtatgtgtgtctgtgtgcatgcatgtgagtgtatgtgtgtgtgtctgagtgtgagc--gtgcctatgcac--gtgtgtgtgtgcatgtttctgtg----t-gtgcatacgccc--atgtgtgtc----tgtgtgcatg
s panTro5.chrX                    298418 168 + 155549662 -TGTGTGTCCATGTGTGTATGTA----------------TGTGTCTGTGCATGCATGCACCTGTATGTGTGTCTGTGTGCATGCATGTGAGTGTA--TGTGTGTGTCTGAGTGTGGGC--GTGCCTATGCAC--GTGTGTGTGTGCATGTTTCTGTG----T-GTGCATACGCCCATATGTGTGTC----TGTGTGCATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46362 189 -    177848 atgcgtgtccatgtgtgtatgtgtctgcgtgcatacgcctgtgtctctgcatgcatgtgactgtgtgtgtgtctgagtgcatgattgtaagtgta--tgtgtg----tgagtgtgggcatatgcctatgcacctatgtgtgtgtgcgtgtttttgtgtgtct-gtgcatacgcctgtatgtgtgtc----tgtgtgcatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143269555 163 + 180051392 atgcgtgt--gtctgtgtgtgtg----------------tgtgtctgtgcgtgcatatacctg--tgtgtgtctcagggcatgcatgtgagcgta--ggtctgtgtctgagtgcgaac--atgcctgtgcag--tgatgtgtgtacacgtttctgtg----t-gtgcgtacacgt--ctgtgtgtc----tgtgtgcatg
i rheMac8.chr6                 I 2 I 2262
s macFas5.chrUn_KE146020            6491 163 -     71016 atgcgtgt--gtgtgtgtgtgtg----------------tgtgtctgtgcgtgcatatacctg--tgtgtgtctcagggcatgcatgtgagtgta--ggtctgtgtctgagtgtgaac--atgcctgtgcag--tgatgtatgtacacgtttctgtg----t-gtgcgtacacgt--ctgtatgtc----tgtgtgcatg
i macFas5.chrUn_KE146020       I 2 C 0
s macNem1.NW_012017243v1          255175 157 +  25972781 atgc--------gtgtgtgtgtg----------------tgtgtctgtgcgtgcatatacctg--tgtgtgtctcagggcatgcatgcgagtgta--ggtctgtgtctgagtgtgaac--atgcctgtgcag--tgatgtgtgtacacgtttctgtg----t-gtgcatacacgt--ctgtgtgtc----tgtgtgcatg
i macNem1.NW_012017243v1       I 2 I 2162
s saiBol1.JH378345                196954 165 +    465904 ctgtgtgttcatgcatgtgtatg----------------tatgtgtctgtgtgtgtCGACTTATTTCtgtgtctgtgtgtatctgtgtgtgtgca--catctgtgtat--gtgtgaat--g-gtgtgtgcat--atgggtgtgtactagtgtgtgtg----tggtgtgtgtgcac--atctgtgtc----tgtgtgtaaa
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                205124 151 +  11138919 ------------gtgtgtgtgtc----------------tgtgtctctgtgtgtgcgcatgtgtgtgtgtgtctctgtgtgtgcatgtgcatgca--tgtgtgtgtgt--gtgtctgt--gtgtgtgtctat--gtgtgtgtgtgcatgtgtgtgtg----c-gtgcat--------gtgtgtgtctctgtgtgtgcatg
i otoGar3.GL873584             I 61 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=144717.000000
s hg38.chrX_KI270880v1_alt        145025 275 +    284869 c------gtgtgtgtgtatgttagtgtgagggtggacgtgtgcctatgcacctatgtgtgtat---gtgtttctgcatgtctgtgcatgcatgcac-ctgtatgcgtgtctgagtgcatgcgtgggagtgtatgtgcgtgtctcagtgtgggcatgcctatgcac--atatgtgtgcacatgtttctgtg--------tgcatatgcttgcatgtg---------tgtgtgcatgcatgtgagtgga--tgtgtgtgtgagtgtgggcatgcctatgcacgtgtgtgtgtgcatgtttctgtgtgt
s panTro5.chrX                    298586 281 + 155549662 CATGTGAGTGTGTGTGTATGTTAGTGTGAGGGTGGACGTGTGCCTATGCACCTATGTGTGTAT---GTGTTTCTGCATGTCTGTGCATGCATGCAC-CTGTATGCGTGTCTGAGTGCATGCGTGGGAGTGTATGTGTGTGTCTCAGTGTGGGCATGCCTATGCAC--ATATGTGTGCACATGTTTCTGTG--------TGCATATGCTTGCATGTG---------TGTGTGCATTCATGTGACTGGA--TGTGTGTGTGAGTGTGGGCATGCCTATGCACGTGTGTGTGTGCGTGTTTCTGTGTGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     46551 279 -    177848 cat----gtgagtgtgtgtgtctgtgtgaatgtgg--gtgtgcctatgcacc--tgtgtgtgt---gcgtttctgtgtgtccgtgcatgcacgcac-ctgtatgtgtgtctgagtgcatgattgtgagtgtgtgtctgtg--tgagtgtgggcgtgcctatgcacctatgtgtgtgtgcgtgtttctgtgtgtc----tgcatacgcctgtatgtgtgtc-----tgtgtgcatgcatgtgtgtg----tgtctgtgtgagtgtgggtgtgcctatgcacgtgtgtgtgtgcatgtttctgtgtgt
i panPan2.chrUn_NW_014024190v1 C 0 I 4258
s macFas5.chrUn_KE146020            6654 257 -     71016 --------tgagtgtatgtgtgtccgtgagtgtga--acatgcctatgcattgatgtgcgtac---acgtttctgtgtgtctgtgcat----acac-ctgtatgtgtgtgtgcatgcatg----------------------tgaatctgggcatgcctatgc----atgcatgtgtgcatgtttctgtgtatctgtgtgcatatgcctgtatgtgcatc-----tgggtgcacgcatgtgagtgtacgtgtgtgtgtgagtgtgggcgtgcgtatgcacgtgtgtgtgtgtgtgtttctgtgtat
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                197119 246 +    465904 -------tggtgtgtgcatg-----------------gtgtgtgtgcacatctgtgtgtgtgcatggtgtgtgtgcacatctgtgtatgcgggaatgctgtgtgcatatgggtgtgtactagtgtgtgtgcacatctgtgtctgtgtgtaa----------------atg-gtgtgtgcatgg---tgtg--------tgtgcacacctatgtgtgtgtcaatggtgtgtgcatatatgtgtgtgtacctgtgtgtgtgcat-----tgtgtgtgtgcacatctgtgtgtaaatg---ctgtgtgc
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                205275 249 +  11138919 ----catgtgtgtgtacatgc----------------ttgtgcatgtgcatgcatgtgtgtgt---gtgtctgtgtgtgtctaagtgtgt--gtct-ctgtgtgtctgtgtgtgtgcatgtgtgtgtgtgtctgtgtgtgcctgtgcgt------------------gtgcatgtgtgtgtgtctctgtg--------tgtgcatgcatgtgtgtgtctg-----tgtgtgtgtacatgtctgtgtgcctgtgcatgtgcgcgtgtgtgtgtctgtgtgtgtctatgtctgtgtgtctgtgtgtgt
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=51606.000000
s hg38.chrX_KI270880v1_alt        145300 104 +    284869 c------tgtatacgcctgtgtctt---------gagtgtgtgaatg------tgcctatggacatgtg--tatacatgtttctgcatgtctgtgcatgcatatgcctgtgtgtc--tctgtgtgcatg
s panTro5.chrX                    298867 104 + 155549662 CT----GTGTATACGCC--TGTCTT---------GAGTGTGTGAATG------TGCCTATGGACATGTG--TGTACATGTTTCTGCATGTCTGTGCATGCATATGCCTGTGTGTC--TCTGTATGCATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51088 104 -    177848 ct----gtgtatacgcc--tgtctt---------gagtgtgtgaatg------tgcctatggacatgtg--tgtacatgtttctgcatgtctgtgcatgcatatgcctgtgtgtc--tctgtatgcatg
i panPan2.chrUn_NW_014024190v1 I 4258 T 3659
s macFas5.chrUn_KE146020            6911 121 -     71016 ctgtgcgtgcatatgcc--tgtgtgtgcacatgagagtgtgtgagtgtgggcatgactatgcacatatggctgtacatgtttctgcatgtc--tgcatgtatatgcccctgtg----tctgcgtgcatg
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                197365  83 +    465904 ------gtgtatgtgtc--tgt------------gtatgtgtgtaca------tgcacat-----tgtg--tgtgaatg-------------gtgtgtgcgtatgtgtgtgtacctgtctgtgtgcatg
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                205524  89 +  11138919 ------ctgtacacgtc--tgtgc----------atgtgcatgcatg------tgtgtgtgtctatgtg--tgtctgtatt------------catgtgtgtgtgtctgtgtgtc--tctgtgtatgtg
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=-2217.000000
s hg38.chrX_KI270880v1_alt        145404 43 +    284869 cgtgtga-----gtgtgtgtgtatgt------tagtgtgagggtggacgtgtgc
s panTro5.chrX                    298971 43 + 155549662 TGAGTGGCATTCATGTGTGTGTATTT--------GCGTGA-GGTGG--GCATGC
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020            7032 25 -     71016 -----------catgtgt----------------gtgtgagtgtgg--acatgc
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                197448 41 +    465904 ------------gtgtgtgtgCACATCTGTGTCTGTGTGTAAATGG-TGTGTGC
i saiBol1.JH378345             C 0 T 2487
s otoGar3.GL873584                205613 29 +  11138919 ---------tctgtgtgtgtacatgt--------ctgtgcgtgtgc--------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=23288.000000
s hg38.chrX_KI270880v1_alt        145447 71 +    284869 ctatgcacctatgtgtgtat---gtgtttctgcatgtctgtgcatgcatgcacctgtatgcgtgtctgagtgca
s panTro5.chrX                    299014 71 + 155549662 CTATGCATGTATATGTGTAC---ATGTTTCTGTATGTCTGTGCATGCATATGCCTGTATATGTGTCTGTGTGCA
i panTro5.chrX                 C 0 I 57
s macFas5.chrUn_KE146020            7057 66 -     71016 ct-tgcacgtatgtgtgt-----gtgattgtgtatgtc--tgcatgcgtatgcctgtatatgtgtctgtgtgca
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                195002 73 +    465904 gtgtgtatctgtatgtgtgcatggtgtgtatgcacatctgtgtctgtgtgtacctgtgtgtttgtgta-gtgcg
i saiBol1.JH378345             T 2487 C 0
s otoGar3.GL873584                205642 57 +  11138919 ----------atatgtgt-----gtgtctgtgtgtgtctatgtctgtgtgt--ctgtgtgtgtccctgtgtatg
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=1038.000000
s hg38.chrX_KI270880v1_alt        145518 5 +    284869 tgcgt
s macFas5.chrUn_KE146020            7123 5 -     71016 catgt
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                195075 5 +    465904 tgtgt
i saiBol1.JH378345             C 0 I 6480
s otoGar3.GL873584                205699 5 +  11138919 tgtct
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e panTro5.chrX                    299085 57 + 155549662 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=959.000000
s hg38.chrX_KI270880v1_alt        145523 37 +    284869 gggagtgtatgtgcg--tgtctcagtgtggacatgccta
s macFas5.chrUn_KE146020            7128 39 -     71016 gtccgtatatgtgtgtctatgtgaatgtgggtatgccca
i macFas5.chrUn_KE146020       C 0 I 1741
s otoGar3.GL873584                205704 27 +  11138919 --------gtgtgtgtctgtacatgtctgtgcatg----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e panTro5.chrX                    299085 57 + 155549662 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=524.000000
s hg38.chrX_KI270880v1_alt        145560 19 +    284869 tgcacatatgtgtgcacat
s otoGar3.GL873584                205731 15 +  11138919 tgcatgcatgtgtg----t
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e panTro5.chrX                    299085 57 + 155549662 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=6197.000000
s hg38.chrX_KI270880v1_alt        145579 123 +    284869 gtttctgtgtgcatatgcttgcatgtgtgtgtgc--gtgcatgtgagtgga-tgtgtgtgtgagtgtgggcatgcctatgcacg--tgtgtgtgtgcatgtttctgtgtgtctgcgtatacgcctgtg
s panTro5.chrX                    299142  81 + 155549662 GTTTCTGTGT--ATCTG------TGTGTCTGTGC--GTGCATAT-------------------------GCCTGCCTGTATATG--TGTGTGTGTGCA------CATGTGTC--CGTATATG--TGTG
i panTro5.chrX                 I 57 C 0
s otoGar3.GL873584                205746 122 +  11138919 gtgtctgtgtgtgtctgtattcatgtgtgtgtgtcagtgtgtgtccatgcattgtcagtgtgagtctgtacatgtctgtgtgtgtctctgtgtgtcca------tgcgtgtgtgtgcacatgcatgtg
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=5779.000000
s hg38.chrX_KI270880v1_alt        145702 115 +    284869 tct-tgagtgtgtgaatgtgcctatggacatgtgtgtacatgtttctgcatgtctgtgcatgcatatgcctgtgtgtctctgtgtgtatgcgtgtgagtggcattcatgtgtgtgt
s panTro5.chrX                    299223 109 + 155549662 TCTGTGTGAGCGTAGATATGCCTATGTACATACGCGTGTACGTTTCTGTGTGTCTGTGCATGCATATGCCTGTATATGTCTGTGTGTGTGCAAATGTGT-------ATGTGTGTGT
i panTro5.chrX                 C 0 I 18
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868   0 +  11138919 C
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=0.000000
s hg38.chrX_KI270880v1_alt        145817 24 +    284869 atttgcgtgaggtgggcatgccta
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868  0 +  11138919 C
e panTro5.chrX                    299332 18 + 155549662 I
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=1821.000000
s hg38.chrX_KI270880v1_alt        145841 22 +    284869 tgcacgtatatgtgtacatgtt
s panTro5.chrX                    299350 22 + 155549662 TGTACGTATGTGTGTACATGTT
i panTro5.chrX                 I 18 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I
e panPan2.chrUn_NW_014024190v1     51192 3659 -    177848 T

a score=39151.000000
s hg38.chrX_KI270880v1_alt        145863 152 +    284869 tctg------tatgtctgtgcatgcatatgcctgtatatgtgtctgtgtgcacatgtgttcatatatgtgtgtctgtgtgagtgtacatatgcctatgtacgtacgtgtgtacgtttctgtgtatctgtgtgtctgtgcgtgcatctgcctgtatatg
s panTro5.chrX                    299372 158 + 155549662 TCTGTGTATCTGTATCTGTGTGTGCATATGCCTGTATATGTGTCTGTGTGCACATGTGTCCATATATGTGTGTCTGTGTGAGTGTACATATGCCTATGTACGTACGTGTGTACGTTTCTGTGTATCTGTATGTCTGTGCGTGCATCTGCCTGTATATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     47533 152 -    177848 tctg------tgtatctgtgtgtgtatatgcctgtatatgtgtctgtatgcacatgtgtccatatatgtgggtctgtgtgagtgtacatatgcctatgtacgtatatgtgtacgtttctgtgtatctgtgtgtctgtgcgtgcatctgcctgtatatg
i panPan2.chrUn_NW_014024190v1 T 3659 C 0
e manLeu1.NW_012108508v1          100889 3870 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868   0 +  11138919 C
e chlSab2.chrUn_KE147541v1        143356 744 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=80.000000
s hg38.chrX_KI270880v1_alt        146015 3 +    284869 tg--t
s panTro5.chrX                    299530 5 + 155549662 TGTCT
i panTro5.chrX                 C 0 I 235
s panPan2.chrUn_NW_014024190v1     47685 3 -    177848 tc--t
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s chlSab2.chrUn_KE147541v1        144100 3 -    811265 tg--t
i chlSab2.chrUn_KE147541v1     I 744 C 0
s manLeu1.NW_012108508v1          104759 3 -    350446 TG--T
i manLeu1.NW_012108508v1       I 3870 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868 0 +  11138919 C
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=17289.000000
s hg38.chrX_KI270880v1_alt        146018 21 +    284869 gtgtgtgtgcaaatgtgtctg
s panTro5.chrX                    299770 21 + 155549662 GTGTGTGTGCAAATGTGTCTG
i panTro5.chrX                 I 235 C 0
s panPan2.chrUn_NW_014024190v1     47688 21 -    177848 gtgtgtgtgcaaatgtgtctg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s chlSab2.chrUn_KE147541v1        144103 21 -    811265 gtgtgtgtgcacacgtgtccg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          104762 21 -    350446 GTGTGTGTGCACATATGTCTG
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868  0 +  11138919 C
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          202582 1187 +    417917 I

a score=111754.000000
s hg38.chrX_KI270880v1_alt        146039 117 +    284869 tatgtgtgtgtctgtgtgaatgtgggtgtgcct-tgtacgtatgtgtgtacatgtt---------tctgtgtatctgtgtacctgt-gtgtgcattcgcctgcatgtctgtgtgtgtgCATGCATGTC
s panTro5.chrX                    299791 117 + 155549662 TATGTGTGTGTCTGTGTGAATGTGGGTGTGCCT-TGTACGTATGTCTGTACATGTT---------TCTGTGTATCTGTGTACCTGT-GTGTGCATTCGCCTGCATGTCTGTGTGTGTGCATGCATGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     47709 121 -    177848 tatgtgtgtgtctgtgtgaatgtgggtgtgcct-tgtacgtatgtgtgtacatgtttc-tgtgtatctgtgtatctgtgtacctgt-gtgtgCATTCGCCTGCATGTC----TGTGTGCATGCATGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          203769 123 +    417917 tatgtgtgtgtctgtgtgaatgtgggtgtgcct-tgtatgtatgtgtgt-catgtttcttatgtatctgtgtAATCTGGTACCTGTGGTGTGCATTCACCTGCATATTC---TGCGTGCATGCATGTC
i gorGor5.CYUI01015925v1       I 1187 C 0
s chlSab2.chrUn_KE147541v1        144124 118 -    811265 tatatgtgtgtctgtgtgagtgtagctatgcctgtgtacgtatgtgtgtacacgtt---------tctgtgtgtctgtgcacctgt-gtgtgcaaacgcctgcgtgtgtgtctgcgtgCATGCACGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          104783 116 -    350446 TATATGTGTGTCTGTGTATGTGC--CCATGCCTGTGTACGTGTGTATGTACGTGTT---------TCTGTGCATCTGTGCACCTGT-GTGTGCATACACCTGCATGTGTGTCTGCGTGCATGCACGTC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                205868   0 +  11138919 C
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=448966.000000
s hg38.chrX_KI270880v1_alt        146156 414 +    284869 AGTGAACGTTGGCGGCCTCTCCTCAGAGCCCCTCTTGCCTGAAGGAAGTGCCACCTCCAG-CCCCCCTTTGCTTTGTTTTGCGTCTCGGGAGTGACGTCACTGTC-GGCTCCG--CAGGATCCTCCCATCCTTG-TTCGTCCTGGGCTTGCGGGATGAGTCTGTCAGGAGCAGACACGC-CGTGGTGGGCCGTGCACACG-TTTGCACCTGCTCTCAGAAGTCCTTTCCC-CGAGGAGGAGGCTCTGTT-GGAGAGAGAGACCCTTGGGC-ACCTGTGGGCCCTCACTGCTCTC---TTCTGAGACT-GTGGT-----ACCGGCCATCTCCAGCCCTGGCCCTGGCCCGGTGACTTCCCCAGGGCACCCCAGGGAT-GTGCCAAAGGAGGACTCCCCGGGGAGGGTGGGTGAGGTGCGTGCCCGCCGTGCCGAG
s panTro5.chrX                    299908 420 + 155549662 AGTGAACGTTGGCGGCCCCTCCTCAGAGCCCCTCTTGCCTGAAGGAAGTGCCACCCCCAG-GCCCCCTTTGCTTTGTTTTGCGTCTCGGGAGTGACATCACTGTC-GGCTCCG--CTGGATCCTCCCATCCTTG-TTCGTCCTGGGCTTGCGGGATGAGTCTGTCAGGAGCAGACACGC-CGTGGTGGGCCGTGCACAGG-TTTGCACCTGCTCTCAGAAGTCCTTTCCC-CGAGGAGGAGGCTCTGCT-GGAGAGAGAGACCCTTGGGC-ACCTGTGGGCCCTCACTGCTCTCG--TTCTGAGACT-GTGGTGTGGTACCGGCCGTCTCCAGCCCTGGCCCTGGCCCAGTGACTTCCCCAGGGCACCCCAGGGGT-GTGCCAAAGGAGGACTCCCCAGGGAGGGTGGGTGAGGTGCATGCCTGCCATGCCGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     47830 409 -    177848 AGTGTACGTTGGTGGCCCCTCATCAGGGCCCCTCTTGCCTGAAGGAAATGCCACCCCTAG-ACCCCCTTTGCTTTGTTTTGAGTCTTGGGAGTGACGTCACTGTC-GGCTCCG--CGGGATCCTCCCATCCTTG-TTCGTCCTGGGCTTGCGGGATGAGTCTGTCAGGAGCAGACACGC-CGTGGTGGGCCGTGCACATG-TTTACACCTGCTCTCAGAAGTCCTTTCCC-CGAGGAGGAGGCTCTGTT-GGAGAGAGAGACCCTTGGGC-ACCTGTGGGCCCTCACTGCTCTCG--TTCTGAGACT-GTGGT-----ACCGGCCGTCTCCA------GCCCTGGCCCGGTGACTTCCCCAGGGCACCCCAGGAGT-GTGCCAAAGGAGGACTCACCGGGGAGGGTGGGTGAGGTGCATGCCCGCCGTGCCGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          203892 394 +    417917 AGTGTACGTGGGCAGCCCCTCCTCAGGGCCCCTCTTGCCTGAAGGAAGTG-CACCCCCAG-GCCCCGTTTGCTTTGTTTTGCGTCTCGGGAGTGACGTCACTGTC-GGCTCCG--CTGGATCCTCCCATCCTTG-TTCGTCCTGGGCTTGCGGGATGAGTCTGTCAGGAGCAGACATG--CGTGGTGAGCCGTGCACACGTTTTGCACCTGCTCTCAGAAGTCTTTTCCC-CGAGGAGGGGGCTCTGTTGGGAGAGAGAGACCCTGGGGC-ACCTGTGGGCCCTCACTGCTCTCG--TTCTGAGACTGGTGGT-----ACCGGCCGTCTCCAGCCCTGGCCCTGGCCCGGTGACTTCCCCAGGGCACCCCAGGA----------------------CGGAAGGGTGGGGTGAGGTGCATGCC-GCCGTGCCGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        144242 407 -    811265 CGTGTATGTTGGAGGCCCTTCCTCAGGGCCCCTCTCGCCTGAAGGAAGTGCCACCCCCAG-CCCCCCTTTGCTTTGTTTTGCGTCTGGGGTGTGACGTCACTGCC------------CGGTCCTCCCATCCTTG-CCCTTCCTAGGCTTGCGGGGTGAGTCTGTCAGAAGCAGACACGC-CGTGGTGGGCCGTATTCACC-TTTGCACCTGCTCCTCCAAGTCCATTCCC-GGAGGAGGAGGCTCTGTT-G--GAGACTAACCCTCGGGC-ACCTGTGGGCCGTCACTGCTCTCTCCTTCTGACACT-GTGGT-----ACCTGCCGTCTCCAGCCCCGGCCCTGGCGTGGTGACTTCCCCAGGACACCCCGGGAGTGGGGCCAAAGGAGGAATAACGGGGGAGGGAGGGCGAGGGACGTGCCCGCCGTGCTGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          104899 408 -    350446 CGTGTATGTTGGAGGCCCTTCCTCAGGGCCCCTCTTGCCTGAAAGAAGTGCCACCCCCAGCCCCCCCTTTGCTTTGTTTTACGTCTGGGGTGTGACGCCGCTGCC------------CAGTCCTCCCGTGCTTG-CCCGTCCTAGGCTTGGAGGATGAGTCTGTCAGAAGCAGACACGC-CGTGGTGGGCCGTATTCACC-TTTGCACCTGCTCCTCCAAGTCCATTCCC-CGAGGAGGAGGCTCTGTT-G--GAGACTAACCCTCTGGC-ACCTGTGGGCCGTCACTGCTCTCTCCTTCTGACACT-GTGGT-----ACCTGCCGTCTCCAGCCCCAGCCCTGGCCTGGTGACTTCCCCAGGACACCCCGGGAGTGGGGCCAAAGGAGGAATAACCGGGGAGGGAGGGCGAGGGACGTGCCCGCCGTGCTGAG
i manLeu1.NW_012108508v1       C 0 I 7
s otoGar3.GL873584                205868 366 +  11138919 AGGGTAAGTTGACTGCCCTTCCATGGACCCTCCTTTTCCCTAAGGAAAAG----TCCCAG-ACCCCCTTTGCT---TTTCGTGCCAGGTAAGCAACTCTCATGTCCTGCTCAGCCCAGGTCTGTCCTGTCTTTGCCTCTTGCTGGTGTTCAGGGCTTTGCCCATCAGAAGGGATCATTTACCTGGTAGGAAATGTTTCTT-TTTGCACCTGCTCTTTCAATTGCTCTCCCAGGAAGAGGAGACTGT-TT-GCAGGGAGTGGGTCTCGGGCTGTCTATTGCTCACAATCGTCCTCA--TTTTTGGAGT-GTGGA----------CCATCTCCAGG-----------------------CCCATGGCACCCGAAGATG-GTTCCCA-------------------GGAGGGCCGGGCACATTCCAGCCTTGTCAG-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=27119.000000
s hg38.chrX_KI270880v1_alt        146570 59 +    284869 ACGCTCCTGAAGGCAGAGGCTGCTCAGGAAAGTCGGCTGCTTCCTAATCTCCGTCCGTG
s panTro5.chrX                    300328 59 + 155549662 ACGCTCCTGAAGGCAGAGGCTGCTCAGGAAAGTCGGCTGCTTCCTAATCTCCGTCCGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     48239 59 -    177848 ACGCTCCTGAAGGCAGAGGCTGCTCAGGAAAGTCGGCTGCTTCCTAATCTCCGTCCGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          204286 58 +    417917 ACG-TCCTGAAGGCAGAGGCTGCTCAGGAAAGTCGGCTGCTTCCTAATCTCCGTCCGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        144649  9 -    811265 --------------------------------------------------ACGTATATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584                206234 50 +  11138919 GTG-TTTTCAAGGCAGAATGTGCTCCAG------GACTGCTTCGTAATCTCT-TCTGT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          105307  7 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=189828.000000
s hg38.chrX_KI270880v1_alt        146629 160 +    284869 CTCACGCAAAGTCCTCGGTCGCCGTCTGC--CACA-CGCTTATTTTATTTGGCAGAAGTT--ACAGCTCAGGC-AATTTCGTTAGGAAACCTGTTGGGGTTTCTT-----GGTTCTATGCAGGATGGCTGGTGCTTTAGGAGGAGGTGGGGATTAGAAAGAGTCTTGAggc
s panTro5.chrX                    300387 160 + 155549662 CTCAGGCAAAGTCCTCGGTCGCCGTCTGC--CACA-TGCTTATTTTATTTGGCAGAAGTT--ACAGCTCAGGC-AATTTCGTTAGGAAACTTGTTGGGGTTTCTT-----GGTTCTATGCAGGATGCCTGCTGCTTTAGGAGGAGGTGGGGATTAGAAAGAGTCTTGAggc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     48298 160 -    177848 CTCACCCAAAGTCCTCGGTCGCCGTCTGC--CACA-CGCTTATTTTATTTGGCAGAAGTT--ACAGCTCAGGC-AATTTCGTTAGGAAACTTGTTGGGGTTTCTT-----GGTTCTATGCAGGATGCCTGGTGCTTTAGGAGGAGGTGGGGATTAGAAAGAGTCTTGAggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          204344 162 +    417917 CGCACGCAAAGTCCTCGGTCGCCGTCTGC--CACACCGCTTATTTTATTTGGCAGAAGTTAAACAGCTCAGGCAAATTTCGTTAGGAAACTTGTTGGGGTTTCTT-----GGTT-TATGCAGGATGCCTGGTGCTTTAGGAGGAGGTGGGGATTAG-AAGAGTCTTGAggc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        144658 158 -    811265 CTTATGCGCAGTTCTGGGTCACCGTCTGC--CACA-CTCTTATTTCGTTTGGTAGAAGTT--ACACCTCAAGC-AACTTCCTTCGGAAACCTG--GGGGTTTTTT-----GGTTCCGTGTAAGATGCACGGTGCTTTAGGAAGAGGTGGGGATGAGAAGGAGTCTTGAggc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          105314 160 -    350446 CTCACGCGCAGTTCTGGGTCACCGTCTGCCACACA-CTCTTATTTCGTTTGGTAGAAGTT--ACACCTCAAGC-AACTTCCTTCGGAAACTTG--GGGGTTTTTT-----GGTTCCGTGTAAGGCGCATGGTGCTTTAGGAAGAGGTGGGAATGAGAAGGAGTCTTGAggc
i manLeu1.NW_012108508v1       I 7 C 0
s otoGar3.GL873584                206284 149 +  11138919 ------CACAG---------GCTGCCTGA--TGCA-CGTTGATTTTCCTGGGTAG-AGTT--CCATCTCAACC-AATTTCCTTGGGGAACTTTTTAGGGCTCTTTTGGGGGGTTCCATTTAGGGTGGTTGGTGATTCAGAAAGTTAGTGGGGTGACAGAGGGGATTTAGGC
i otoGar3.GL873584             C 0 I 9600
e saiBol1.JH378345                195080 6480 +    465904 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=110855.000000
s hg38.chrX_KI270880v1_alt        146789 97 +    284869 cggacgt-ggtggctcacgcctgcaatcccagcactttgggaggctgaggcgggtggatcacgaggtcagcagttcgagaccagcctgaccaacatgg
s panTro5.chrX                    300547 97 + 155549662 cggacgt-ggtggctcacgcctgcaatcccagcactttgggaggttgaggcgggtggatcacgaggtcagcagttcgagaccagcctgaccaacatgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     48458 97 -    177848 cggacgt-ggtggctcacgcctgcaatcccagcactttgggaggccgaggcgggtggatcacgaggtcgggagttcgagaccagcctggccaacatag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          204506 97 +    417917 cggacgtaggtggctcacgcctgcaatccagccacttt-ggaggccgagccgggtggatcacgaggtcaggggtttgagaccagcctggccaacatag
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        144816 97 -    811265 cgggcgc-ggtggctcccgcctgtcatcccggccctttgggaggccgaggaggttggatcacgaggtcaggagttcgagaccagcctggccaacatgg
i chlSab2.chrUn_KE147541v1     C 0 I 1543
s manLeu1.NW_012108508v1          105474 97 -    350446 cgggcgc-ggtggctcccgcctatcatcccggccctttgggaggccgaggaggttggatcacgaggtcgggagttcgagaccagcctggcccacatgg
i manLeu1.NW_012108508v1       C 0 I 563
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=70121.000000
s hg38.chrX_KI270880v1_alt        146886 165 +    284869 tgaaaccccatctctactaaaaatacaaaaaaatcagccaggtatggtggtgggcacctgtagtt-ccagctagtcgggaggctgaggcaggagaatcacttaaacctgggaggtggaggttgcagtgagccgagatcgca-ccaatgtactccagcctgggtgaca
s panTro5.chrX                    300644 165 + 155549662 tgaaaccccatctctactaaaaatacaaaaaaatcagccaggtgtggtggtgggcacctgtcgtt-ccagctactcgggaggctgaggcaggagaatcacttaaaccagggaggtggaggttgcagtgagccaagatcacg-ccactgctctccagcctgagtgata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     48555 163 -    177848 tgaaaccccatctctgctaaaaatac--aaaaattagccgggtgtgatggtgcacacctgtcatc-ccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagcggagatcgca-ccactgcactccaacctgggcgaca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          204603 165 +    417917 tgcaaccccgtctctgctgaaaaaaaacaaaaattagctgggtgtggtggtgcacacctgtcatcaccagctactc-ggaggctga-gcaggagaatcgcttaaacctgggaggtggaggttgcagtgagccgagatcgcacccgctgcactccagcctgggcgaca
i gorGor5.CYUI01015925v1       C 0 I 2439
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=7097.000000
s hg38.chrX_KI270880v1_alt        147051 33 +    284869 gtgtgagactccatctcaaaaaaaaaaaaaaaG
s panTro5.chrX                    300809 33 + 155549662 gtgtgagactccatctcaaaaaaaaaaaaaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     48718 33 -    177848 gagggagattccatctcaaaacaaaaacaaaag
i panPan2.chrUn_NW_014024190v1 C 0 I 2653
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          204768 2439 +    417917 I

a score=49958.000000
s hg38.chrX_KI270880v1_alt        147084 564 +    284869 -ttagccaggcgtggtggcaggtgcctgtaatcccagctgcttgagatgctgaggcaggagaatcacttaaacccgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggtgacaaaagtgagactacggctcaaaaaaagaaaaa--aaaatacaaaTAGTAgccaagcctggtggtgaacacctggaaccctggctacttcggaggctgaggcgggagaatcgtttgaacccgggaggcggaggttgcagcgagctgaggtcgcgcctgggaggcagaggttgcaagattctgtctcggaaaaaaaaaaaa--gaaaatatgatccatctgtaacattgaatgctacacagccatgaaaaagaatcaaatcatgtcctttgcagaaatacggatgcagctggaggcGCttcttcttcttcttttttttttttttttttagacggattctcactctgtcgcccaggctggagtgcagtggcgcggtctcggctcactgcaagctccgcctccttggttcacgccattctcttgcctcagTGGAGGCCCAC
s panTro5.chrX                    300842 567 + 155549662 attagccaggcgtggtggcaggtgcctgtaatcccagctgcttgagatgctgaggcaggagaatcacttaaacccgggaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggtgacagaagtgagactatggatcaaaaaaaaaaaaagaaaaatacaaaTAGTAgccaagcctggtggtgaacacctggaaccctggctactttggaggctgaggcgggagaatcgtttgaacccgggaggcggaggttgcagcgagctgaggtcgcgcctgggaggcagaggttgcaagattctgtctcagaaaaaaaaaaaaaagaaaatatgatccatctgtaacattgaatactacacagccatgaaaaagaatgaaatcatgtcctttgcagaaatacgggtgcagctggaggcGCttcttcttctt--tttttttttttttttttagacggagtctcactctgtcgcccaggctggagtgcagtggcacggtctcggctcactgcaagctccgcctcccgggttcacgccattgtcttgcctcagTGGAGGCCCAC
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          256104 11198 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          204768 2439 +    417917 I
e panPan2.chrUn_NW_014024190v1     48751 2653 -    177848 I

a score=128045.000000
s hg38.chrX_KI270880v1_alt        147648 562 +    284869 ataagagggagctaaaattgggtacaaatagtcatagaaatgggaacaatagatgctggcgtctgctagacgggggagggaaggatggaggcaaaggcggaaaaatcatacgttgggtcccatgctcagtacttggatggcacaatccttcatgccccaaacttcagcatcacacattatactcaagcaacaaatgtgcacatgagcctcctgaatccgaaataaaagttgCCATGATTTAAAAAAGAAATAAAGATGATGATTGAAAT-ATGTGttttta-ttttttgagacagagtctcgctgtgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggaagacaggcgcctgccaccatgcctgactaa-tttttgtatttttagtagagacggggtttctccatattggccaggctggtctcgaactcccgacctcaggtgatccacctgccttggcctcccaaactgctgggattacaggtgggagccactgcgc
s panTro5.chrX                    301409 558 + 155549662 ataagagggagctaaaattgggtacaaatagtcatagaaatgggaacaatagatgctggcgtctgctagacgggggagggagggacggaggcaagggtggaaaaataacacattgggtcccatgctcagtacttgggtggcacaatccttcatgccccaaacttcagcatcacacattatactcatgcaacaaacgtgcacatgagcctcctgaatccaaaataaaagttgCCATGATTTAAAAAAGAAATAAAGATGATGATTGAAAT-ATGTGttttta-ttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggtgtgatctcggctcactacaacctccacctcccgggttaaagcaatcctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgcct----aa-tttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacaggtgggagccactgcac
i panTro5.chrX                 C 0 C 0
s colAng1.NW_012115411v1          267302 565 +   1230721 ataggagggagctaaaattgggtacgaatagtcataaaaacgagaagcgcagacactggggtctgctagatgggggagggagggatggaggccagggtgaaaaactaacctatcaggtgctacagtcagtacccaggtggcagaatccttcatgccccaaacgtcagcatcacacaatgtactcatgtcacagacgtgtacatatacctcctgaatccaaaatgaaagttgCCATGATTTAAAAAAGAAATAAAGATGATGATTGAAATAATGTGtttttatttttttgagatggagtctcactctgtcacccaggctggagtgcagtgatgtgatctcagctcactgcaagctctacctcctggattcaagcgattctcctgcctcagcctcccgagaagctgggatgacaggtgcccgccaccacgcttggctaattttttgtattttcattagagacagggtttcgccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcgcgaagtgctgggatgacaggcgtgagccactgcgc
i colAng1.NW_012115411v1       I 11198 I 1223
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          204768 2439 +    417917 I
e panPan2.chrUn_NW_014024190v1     48751 2653 -    177848 I

a score=30824.000000
s hg38.chrX_KI270880v1_alt        148210 365 +    284869 gcagcATTTGTCTGTTGTTTATAAGTTGCCACATCTGACATTTGGTGGTGTTGGATTTTCTCTGAAGGTCtttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctgggattgcaggcacccaccaccacgcctgcctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggatggtctcaaactcctgacct--ggtgatccgcctgccttggcctcccaaagtgctgggattacaggcatgagcctccacacctggcctttttt
s panTro5.chrX                    301967 367 + 155549662 ccagcATTTGTCTGTTGTTTATAAGTTGCCACATCTGACATTTGGTGGTGGTGGATTTTCTCTGAAGGTCtttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggtgcagtctcagctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggtgcccgtcaccacacctgcctaatttttgtgtttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctggggttacaggtgtgagccaccgcgcccggcctttttt
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e gorGor5.CYUI01015925v1          204768 2439 +    417917 I
e panPan2.chrUn_NW_014024190v1     48751 2653 -    177848 I

a score=1711.000000
s hg38.chrX_KI270880v1_alt        148575 16 +    284869 tttttct----------------------gagactgag
s panTro5.chrX                    302334 38 + 155549662 ttttttttttcttttttttctttttttgtgagactgag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          207207 16 +    417917 ttttttt----------------------gagacagag
i gorGor5.CYUI01015925v1       I 2439 C 0
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I
e panPan2.chrUn_NW_014024190v1     48751 2653 -    177848 I

a score=147120.000000
s hg38.chrX_KI270880v1_alt        148591 301 +    284869 tcttactctgtcg-cccaggctggagtgcaatggca-cgatctcgg-ctcaccgcaacctccacctcctggattcaagcgattctcctgcctcagcctcccgagcagctgggatgacaggcccccgccaccacacctgcctaa-tttttttttgtattttcagtagaggtggggtttcaccatgtgagtcaggctggtctccaactcctgacctcaagtgatcctcccgcctcggcctcccaaagtgctgggatcgcggacgtgagccaccacaccggccAACATTCACGCG-------------------------------ATTTTCAGAATTA
s panTro5.chrX                    302372 301 + 155549662 tcttgctctgtca-cccaggctggagtgcaatggca-cgatctcgg-ctcactgcaacctccgcctcctggattcaggcgattctcctgcctcagcctcccgagcagctgggatgacaggcccccgccaccacacctggctaa-tttttttttgtattttcagtacaggtggggtttcaccatgtgagtcaggctggtctccaactcctgacctcaagtgatcctcccgcctcggcctcccaaagtgctgggatcgcggacgtgagccaccgcaccggccAACATTCACGCG-------------------------------ATTTTCAGAATTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51404 331 -    177848 tcttgctctgttg-cccaggctggagtgcagtggtg-caatctcag-ctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagcagctgggatgacaggcccccgccaccacacctgactaa--tattttttgtattttcagtagaggtggggtttcaccatgtgagtcaggctggtctccaactcctgacctcaagtgatcctcccgcctcggcctcccagagtgctgggatcgcggacgtgagccactgcaccggccAACATTCACGTGATTTTCAGAATTAGCAGATGAAAATTAGCTAATTTTCAGAATTA
i panPan2.chrUn_NW_014024190v1 I 2653 C 0
s gorGor5.CYUI01015925v1          207223 306 +    417917 tcttgctgtgtcaccccaggctggagtgcaatggtgccaatctcggcctcactgcaacctccacctcctggattcaagcgattct-ctgcctcagcctcctgagcagctgggatgacaggcccccgccaccacacccggctaattttttttttgtattttcagtagaggttgggtttcaccatgtgagtcaggctggtctccaactcctgacctcaagtgatcttccctcctcggcctcccaaagtgctgggatcgcggacgtgagccaccgcaccggccAACATTCACAGG-----------------------------CAATTTTCAGAATTA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I
e macFas5.chrUn_KE146020            7167 1741 -     71016 I

a score=2422.000000
s hg38.chrX_KI270880v1_alt        148892 3 +    284869 GCA
s panTro5.chrX                    302673 3 + 155549662 GCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51735 3 -    177848 GCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207529 3 +    417917 GCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            8908 3 -     71016 GCG
i macFas5.chrUn_KE146020       I 1741 C 0
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143269718 2262 + 180051392 I
e macNem1.NW_012017243v1          255332 2162 +  25972781 I

a score=57042.000000
s hg38.chrX_KI270880v1_alt        148895 33 +    284869 GCCACCCGTCT-GGGTCCCCACAGTGTTTGGGGA
s panTro5.chrX                    302676 33 + 155549662 GCCACCCGTCT-GGGTCCCCACAGTGTTTGGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51738 33 -    177848 GCCACCCGTCT-GGGTCCCCACAGTGTTTGGGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207532 33 +    417917 GCCACCCGTCTGGGGTCCCCACAGTG-TTGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143271980 33 + 180051392 GCCGCCCGTCT-GGGTCCTCACAGTGTCTGGGGA
i rheMac8.chr6                 I 2262 I 31
s macFas5.chrUn_KE146020            8911 33 -     71016 GCCGCCCGTCT-GGGTCCTCACAGTGTCTGGGGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257494 33 +  25972781 GCCGCCCGTCT-GGGTCCTCACAGTGTCTGGGGA
i macNem1.NW_012017243v1       I 2162 I 31
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I

a score=11172.000000
s hg38.chrX_KI270880v1_alt        148928 23 +    284869 -AAGGGATTTGG---GGGTGTGGTACG
s panTro5.chrX                    302709 23 + 155549662 -AAGGGATTTGG---GGGTGTGGTACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51771 23 -    177848 -AAGGGACTTGG---GGGTGTGGTACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207565 23 +    417917 -AAGGGATTTGG---GGATGTGGTACG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            8944 26 -     71016 GTAGCGCCTCGGCCTGGCTCTGG-ACA
i macFas5.chrUn_KE146020       C 0 I 1
e manLeu1.NW_012108508v1          105571 563 -    350446 I
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e chlSab2.chrUn_KE147541v1        144913 1543 -    811265 I
e cerAty1.NW_012001098v1          170486 2967 -   1025902 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143272013 31 + 180051392 I
e macNem1.NW_012017243v1          257527 31 +  25972781 I

a score=8708.000000
s hg38.chrX_KI270880v1_alt        148951 4 +    284869 CCCT
s panTro5.chrX                    302732 4 + 155549662 CCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51794 4 -    177848 CCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207588 4 +    417917 CCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            8971 4 -     71016 CCGC
i macFas5.chrUn_KE146020       I 1 C 0
s cerAty1.NW_012001098v1          173453 4 -   1025902 CCCC
i cerAty1.NW_012001098v1       I 2967 C 0
s chlSab2.chrUn_KE147541v1        146456 4 -    811265 CCCC
i chlSab2.chrUn_KE147541v1     I 1543 C 0
s manLeu1.NW_012108508v1          106134 4 -    350446 CCCC
i manLeu1.NW_012108508v1       I 563 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I
e rheMac8.chr6                 143272013 31 + 180051392 I
e macNem1.NW_012017243v1          257527 31 +  25972781 I

a score=44802.000000
s hg38.chrX_KI270880v1_alt        148955 15 +    284869 GTGTTCCCCGGCGGG-
s panTro5.chrX                    302736 15 + 155549662 GTGTTCCCCGGCGGG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51798 15 -    177848 GTGTTCCCCGGCGGG-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207592 15 +    417917 GTGTTCCCCGACGGG-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272044 16 + 180051392 GTGTTCCCCGGGGGGA
i rheMac8.chr6                 I 31 C 0
s macFas5.chrUn_KE146020            8975 16 -     71016 GTGTTCCCCGGGGGGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257558 16 +  25972781 GTGTTCCCCGGGGGGA
i macNem1.NW_012017243v1       I 31 C 0
s cerAty1.NW_012001098v1          173457 16 -   1025902 GTGTTTCCCGGGGGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146460 15 -    811265 GTGTTCCCC-GGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106138 16 -    350446 GTGTTCCCCGGGGGGA
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e colAng1.NW_012115411v1          267867 1223 +   1230721 I

a score=111220.000000
s hg38.chrX_KI270880v1_alt        148970 21 +    284869 CAGCTGGGGCCGGACTCCCTT
s panTro5.chrX                    302751 21 + 155549662 CAGCTGGGGCCGGACTCCCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51813 21 -    177848 CAGCTGGGGCCGGACTCCCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207607 21 +    417917 CAGCTGGGGCCGGACTCCCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272060 21 + 180051392 CAGCTGGGGCCGGACTCCCTT
i rheMac8.chr6                 C 0 I 16
s macFas5.chrUn_KE146020            8991 21 -     71016 CAGCTGGGGCCGGACTCCCTT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257574 21 +  25972781 CAGCTGGGGCCGGACTCCCTT
i macNem1.NW_012017243v1       C 0 I 3
s cerAty1.NW_012001098v1          173473 21 -   1025902 CAGCTGGGGCCGGACTCCCTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146475 21 -    811265 CAGCTGGGGCCGGACTCCCTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106154 21 -    350446 CAGCTGGGGCCGGACTCCCTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269090 21 +   1230721 CAGCTGGGGCCAGACTCCCTT
i colAng1.NW_012115411v1       I 1223 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I

a score=11972.000000
s hg38.chrX_KI270880v1_alt        148991 32 +    284869 GCCGACATCCTGTGTGTTCTCTGCATCTCGAA
s panTro5.chrX                    302772 32 + 155549662 CCCGACATCCTGTGTGTTCTCTGCATCTCGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51834  5 -    177848 CCCGA---------------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207628 18 +    417917 CCCGACATCCTGTGTGTT--------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020            9012  4 -     71016 --------------------------CCCG--
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          173494 28 -   1025902 CCCGCCGTCCCGTGT----TCTACATCCCGAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146496 28 -    811265 CCCGACGTCCCTTGT----TCTGCATCCCCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106175 28 -    350446 CCCGACGTCCCGTGC----TCTGCATCCCGAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269111 28 +   1230721 CCCGAGGTCCCGTGT----TCTGCATCCCGAG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e rheMac8.chr6                 143272081 16 + 180051392 I
e macNem1.NW_012017243v1          257595  3 +  25972781 I

a score=22203.000000
s hg38.chrX_KI270880v1_alt        149023 13 +    284869 GTTGTCACGAACT
s panTro5.chrX                    302804 13 + 155549662 GTTGTCACGAACT
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020            9016 12 -     71016 -TTGTCGTGAAAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257598 13 +  25972781 GTTGTCATGAAAG
i macNem1.NW_012017243v1       I 3 C 0
s cerAty1.NW_012001098v1          173522 13 -   1025902 GTTGTCATGAGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146524 13 -    811265 GTTGTCATGAGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106203 13 -    350446 GTTGTCATGAGAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269139 13 +   1230721 GTGGTCGTGAGAG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I
e rheMac8.chr6                 143272081 16 + 180051392 I
e gorGor5.CYUI01015925v1          207646  0 +    417917 C
e panPan2.chrUn_NW_014024190v1     51839  0 -    177848 C

a score=31152.000000
s hg38.chrX_KI270880v1_alt        149036 12 +    284869 CTCATGGCAA-CC
s panTro5.chrX                    302817 12 + 155549662 CTCATGGCAA-CC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51839  5 -    177848 -------CAA-CC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207646  5 +    417917 -------CAA-CG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272097 12 + 180051392 CTCACGGCCA-CC
i rheMac8.chr6                 I 16 C 0
s macFas5.chrUn_KE146020            9028 12 -     71016 CTCACGGCCA-CC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257611 12 +  25972781 CTCACGGCCA-CC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          173535 13 -   1025902 CTCACGGCCACCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146537 12 -    811265 CTCACGGCCA-CC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106216 12 -    350446 CTCACGGCCA-CT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269152 12 +   1230721 CTCACGGCGA-CC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                195080 6480 +    465904 I
e otoGar3.GL873584                206433 9600 +  11138919 I

a score=364063.000000
s hg38.chrX_KI270880v1_alt        149048 83 +    284869 CCCTT-CTCGTGCTATGGGTTCCG-TTTAGCCTCCC-TCAGAATTAGCTAAAAACCCACCGGCTTGATTTCTGGCATTTGCAACGG
s panTro5.chrX                    302829 83 + 155549662 CCCTT-CTCGTGCTATGGGTTCCG-TTTAGCCTCCC-TGAGAATTAGCTAAAAACCCACCGGCTTGATTTCTGGCGTTTGCAACGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51844 83 -    177848 CCCTT-CTCGTGCTATGGGTTCCA-TTTAGCCTCCC-TCAGAATTAGCTAAAAACCCACCGGCTTGATTTCTGGCATTTGCAACGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207651 83 +    417917 CCCTT-CTCATGCTATGGGTTCGGTTTTAGCCTCCC-TCAGAATTAGCTAAAAACCCA-CGGCTTGATTTCTGGCATTTGCAATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272109 83 + 180051392 CCCTT-GGCTTGCTATGGGTTCCA-CGTAGCCTCCC-TCAGAATTAACTAAAAATCCTCCGGCTTGATTGATGGCCTTTGCAGCGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9040 83 -     71016 CCCTT-GGCTTGCTATGGGTTCCA-CGTAGCCTCCC-TCAGAATTAACTAAAAATCCTCCGGCTTGATTTATGGCCTTTGCAACGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257623 83 +  25972781 CCCTT-GGCTTGCTATGGGTTCCA-TGTAGCCTCCC-TCAGAATTAGCTAAAAATCCTCCGGCTTGATTGATGGCCTTTGCAACGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          173548 83 -   1025902 CCCTT-GGCGTGCTATGGGTTCCA-TGTAGCCTCCC-TCAGAATTAGCTAAAAATCCACCGGCTTGATTTATGGCCTTTGCAACGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146549 84 -    811265 CCCCTGGGCTTGCTGTGGGTTCTA-TGTAGCCTCCC-TCAGAATTAGCTAAAAATCCTCCGGCTTGATTGATGGCCTTTGCAACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106228 83 -    350446 CCCTT-GGCGTGCTATGGGTTCCA-TGTAGCCTCCT-TCAGAATTACCTAAAAATCCTCCGGCTTGATTTATGGCCTTTGTAACGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269164 83 +   1230721 CCCTT-GACGTGCTACGGGTTCCG-TTCAGCCTCCC-TCAGAATTAGCTGAAAATCCGCCGGCTTGATTTATGGCCTTTGCAACGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                216033 84 +  11138919 CCTTT-TGCACACTATGTATTCAA-CGGAGCCTTCAGTCCAAAGGAGCCAAAACCCGCCGGCCTTGATTTATTGCACATGCAGTGG
i otoGar3.GL873584             I 9600 C 0
e saiBol1.JH378345                195080 6480 +    465904 I

a score=45610.000000
s hg38.chrX_KI270880v1_alt        149131 9 +    284869 CCGCGCTCA
s panTro5.chrX                    302912 9 + 155549662 CCGCGCTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51927 9 -    177848 CCGCACTCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207734 9 +    417917 CCGCGCTCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272192 9 + 180051392 CCGCGTTCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9123 9 -     71016 CCGCGTTCA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257706 9 +  25972781 CCGCGTTCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          173631 9 -   1025902 CCGCGTTCA
i cerAty1.NW_012001098v1       C 0 I 8
s chlSab2.chrUn_KE147541v1        146633 9 -    811265 CCGCGTTCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106311 9 -    350446 CCGCGTTCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269247 9 +   1230721 CCGCGTTCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                201560 9 +    465904 CCGTGCTTA
i saiBol1.JH378345             I 6480 C 0
s otoGar3.GL873584                216117 7 +  11138919 CCGTACG--
i otoGar3.GL873584             C 0 C 0

a score=236858.000000
s hg38.chrX_KI270880v1_alt        149140 61 +    284869 GGAAACCTCCTGCCTCCTGAAAATGCTCAT-GCTGGC-GGAACGGGAAGGCAAATAGGAATCC
s panTro5.chrX                    302921 61 + 155549662 GGAAACCTCCTGCCTCCTGAAAATGCTCAT-GCTGGC-AGAACGGGAAGGCAAATAGGAATCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51936 61 -    177848 GGAAACCTCCTGCCTCCTGAAAATGCTCAT-GCTGGT-GGAACGGGAAAGCAAATAGGAATCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          207743 62 +    417917 GGACACCTCCTGCCTCCTGAAAATGCTCGT-GCTGGCGGGAACGGGAAGGCAAATAGGAATCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272201 61 + 180051392 AGGAACGTCGTGCGTCCTGAAACAGCTCGT-GCCGGC-CGAACAGGAAGGCAATTAGGAACCG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9132 61 -     71016 AGGAACGTTGTGCGTCCTGAAAAAGCTCGT-GCCGGC-CGAACAGGAAGGCAATTAGGAACCG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257715 61 +  25972781 AGGAACGTCGTGCGTCCTGAAAAAGCTCGT-GCCGGC-CGAACAGGAAGGCAATTAGGAACCG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        146642 61 -    811265 ACGAACGTCGTGCGTCCTGAAAACGCTCGT-GCCGGC-CGAACAGGGAGGCAATTAGGAACCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106320 61 -    350446 AGGAACGTCGAGCGTCCTGAAAACGCTCGT-GCCGGC-CGAACAGGAAGGCAATTAGGAACCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269256 61 +   1230721 AGGAACGTCATGGGTCCTGAAAACGCGCGT-GCCGGC-CGCACGGGAAGGCAATTAGGAACCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                201569 61 +    465904 AGGAGCGTGGTCCTTCCTGAAAACGCTCAT-GCCGGC-GGAAAACGAGCCCGATTAGAAACCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                216124 62 +  11138919 AGGAACGAAATTCCTCCTGAAAATGCCAGTCTCCGGC-AGAACAGGAAGCCAATTAGGAGGCC
i otoGar3.GL873584             C 0 C 0
e cerAty1.NW_012001098v1          173640  8 -   1025902 I

a score=648044.000000
s hg38.chrX_KI270880v1_alt        149201 124 +    284869 GTGGATGATAAATGGGCGTTTTAAGCAGCAGTTTACTTAATATCCCTATTAAACGAGACTCTTTGCATTAATCACTTCA-TTCTCCAGCAGTCTATAAGGCCCTTTAATTGC--TTCTTAAATGAGG
s panTro5.chrX                    302982 124 + 155549662 GTGGATGATAAATGGGCGTTTTAAGCAGCAGTTTACTTAATATCCCCACTAAACGAGACTCTTTGCATTAATCACGTCA-TTCTCCAGCAGTCTATAAGGCCCTTTAATTGC--TTCTTAAATGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     51997 122 -    177848 GTGGATGATAAATAGGCGTTTTAAGCAGCAGTTTACTTAATATCCCCATTAAACGAGACTC--TGCATTAATCACTTCA-TTCTCCAGCAGTCTATAAGGCCCTTTAATTGC--TTCTTAAATGAGG
i panPan2.chrUn_NW_014024190v1 C 0 I 2504
s gorGor5.CYUI01015925v1          207805 126 +    417917 GTGGATGATAAATGAGCGTTTTAAGCAGCAGTTTACTTAATATCCCCATTAAACGAGACTCTTTGCATTAATCACTTCA-TTCTCCAGCAGTCTATAAGGCCCTTTAATTGCCTTCTTTAAATGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272262 122 + 180051392 GTGGATGATAAATGGACATTTTAAGCCGCCGTTTACTTAATATCCCCATTAAACAAGACTCTTTGCATTAATCAC--AA-TTCTCCAGCAGTCTATGAGGCCCTTTAATTGC--TGCTTCAATGAGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9193 122 -     71016 GTGGATGATAAATGGACATTTTAAGCCGCCGTTTACTTAATATCCCCATTAAACAAGACTCTTTGCATTAATCAC--AA-TTCTCCAGCAGTCTATGAGGCCCTTTAATTGC--TGCTTCAATGAGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          257776 122 +  25972781 GTGGATGATAAATGGACATTTTAAGCCGCCGTTTACTTAATATCCCCATTAAACAAGACTCTTTGCATTAATCAC--AA-TTCTCCAGCAGTCTATGAGGCCCTTTAATTGC--TGCTTCAATGAGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          173648 122 -   1025902 GTGGATGATAAATGGACATTTTAAGCCGCAGTTTACTTAATATCCCCATTAAACAAGACTCTTTACATTAATCAC--AA-TTCTCCAGCAGTCTGTGAGGCCCTTTAATTGC--TGCTTCAATGAGG
i cerAty1.NW_012001098v1       I 8 C 0
s chlSab2.chrUn_KE147541v1        146703 123 -    811265 GTGGATGATAAATGGACGTTTTAAGCCGCCGTTTACTTAATATCCCCATTAAACAAGGCTCTTTGCATTAATCAC--AATTTCTCCAGCAGTCTAGGAGGCCCTTTAATTGC--TGCTTCAACGAGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106381 122 -    350446 GTGGATGATAAATGGACATTTTTACTCGCAGTTTACTTAATATCCCCATTAAACAAGACTCTTTACATTAATCAC--AA-TTCTCCAGCAGTCTATGAGGCCCTTTAATTGC--TGCTTCAATGAGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269317 122 +   1230721 GTGGATGACAAATGGACATTTTAAGCCGCCGTTTACTTAATATCCCCATTAAACAAGACTCTTTGCATTAATCAC--CA-TTCTCTAGCAGTCTATAAGGCGCTTTAATTGC--TGCTTAAATGAGG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                201630 123 +    465904 CGGGGTGACTCCTGGGTGTGTTCGCCGGACGTTTCCCTGACATTCCGGTTACACACGACGCTCTGCGTCCATCATTTTC-TTCCCCGGCCGCCTCCGAGGCCCTTTAATTGC--TGCTTAAATGAG-
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                216186 113 +  11138919 ATGGGTGATAAACGGACATTCTAACCAGCAGTTTACTTAATATCCCCATTAAACAAGACTCTTTGCATTAATCACTTCA-TTCTCCTCCAGTCTATGTGGC-------------CGCCCCAGCGAGC
i otoGar3.GL873584             C 0 C 0

a score=901611.000000
s hg38.chrX_KI270880v1_alt        149325 235 +    284869 ACT-GAGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGATG----C--TAGCCAGGGCTCAGCTGCCC-GGCTGCCAAGAACTGTC-AGAATTGATCACGTATGTGTTCACGTTTCCTACAGTCTCATTGGAGTTCTCTGAGATTGACAGGAGAAAGTATCACATACTT------tgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgt----------CAGAGAC---AGAGGGA-CACAGAGG---CCGGGAGCAGG---G
s panTro5.chrX                    303106 237 + 155549662 ACT-GAGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGATG----C--TAGCCAGGGCTCAGCTGCCC-GGCTGCCAAGAACTGTC-AGAATTGATCACGTACGTGTTCACGTTTCCTACAGTCTCATTGGAGTTCTCTGAGATTGACAGGAGAAAGTATCACATACTT----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----------CAGAGAC---AGAGGGA-CACAGAGG---CCGGGAGCAGG---G
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          207931 238 +    417917 ACTGGAGTTTCCGTCCAAACTCCAATCTTGGATGGGGGAGAGA------------GAGATG----C--TAGCCAGGGCTCAGCTG-CC-GGCTGCCAAGAACTGTCAAGAATTGATCACGTACGTGTTCACGTTTCCTACAGTCTCATTGGAGTTCTCTGAGATTGACAGGAGAAAGTATCACATACTT------------tgtgtgtgtgtgtgtgtgtctgtgtgtgt----------cAGAGACCAGGAGGGGA-CACAGAGG---CCGGGATCAGGGGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272384 222 + 180051392 ACT-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----C--TTGCCAGGGCTCAGCTGCCCGGGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACATTTCCTACGGTCTCATTGGAGTACCCGGGGATTGACAGGAGAAAGTACCACATACTT--------------------GGGgtgtgtgtgtgtgtgtgt----------CGGAGAC---GGACGGA-CACGGAGG---CCGGGAGCAGG---G
i rheMac8.chr6                 C 0 I 8
s macFas5.chrUn_KE146020            9315 222 -     71016 ACT-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----C--TTGCCAGGGCTCAGCTGCCCGGGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACGTTTCCTACGGTCTCATTGGAGTACCCGGGGATTGACAGGAGAAAGTACCACATACTT--------------------GGGgtgtgtgtgtgtgtgtgt----------CGGAGAC---GGACGGA-CACGGAGG---CCGGGAGCAGG---G
i macFas5.chrUn_KE146020       C 0 I 8
s macNem1.NW_012017243v1          257898 232 +  25972781 ACT-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----C--TTGCCAGGGCTCAGCTGCCCGGGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGGTCACGTTTCCTACGGTCTCATTGGAGTACCCGGGGATTGACAGGAGAAAGTACCACATACTTtgtg----------tgtgtgtgtgtgtgtgtgtgtgtgtgt----------CGGAGAC---AGACGGA-CACGGAGG---CCGGGAGCAGG---G
i macNem1.NW_012017243v1       C 0 I 3377
s cerAty1.NW_012001098v1          173770 227 -   1025902 ACT-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAGAAGGTT--TTGCCAGGGCTCAGCTGCCCGGGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACGTTTCCTACGGTCTCATTGGAGTACCCGGGGATTGACAGGAGAAAGTACCACATACTt-------------------gtgtgtgtgtgtgtgtgtgtgt----------CAGAGAC---GGACGGA-CACGGAGG---CCGGGAGCAGG---G
i cerAty1.NW_012001098v1       C 0 I 8
s chlSab2.chrUn_KE147541v1        146826 231 -    811265 ACC-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----C--TCGCCAGGGCTCAGCTGCCC-GGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACGTTTCCTATGGTCTCATTGGAGTGCCCGGGGATTGACGGGAGAAAGTACCACATCCTT--------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGAGAGAC---GGAGGGA-CACACAGG---CCGGGAGCAGG---G
i chlSab2.chrUn_KE147541v1     C 0 I 8
s manLeu1.NW_012108508v1          106503 218 -    350446 ACT-GTGTTTCCGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----CTTTTGCCAGGGCTCAGCTGCCCGGGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACGTTTCCTACGGTCTCATTGGAGTACCCGGGGATTGACAGGAGAAAGTACCACATACTT--------------------CGTGTGTGTGTGTGT----------------GAGAGAC---GGACGGA-CACGGAGG---CCGGGAGCAGG---G
i manLeu1.NW_012108508v1       C 0 I 8
s colAng1.NW_012115411v1          269439 241 +   1230721 ACC-GTGTTTCAGTCCAAACT-CAATCTTGGAT-GGGGAGAGA------------GAGAAG----C--TTGCCAGGGCTCAGCTGCCC-GGCTGCCAAGAACTGTC-AGAATCGATCACGTACGTGTTCACGTTTCCTACGGTCTCGTTGCAGTACCCGGGGATTGACAGGAGAAAGCACCACATACTTtgtgtgtatatgtctgtgtgtgtgtgtgtgtgtgtgtgtgt----------CAGAGAG---AGAGGGA-CACAGAGG---CCGGGAGCAGG---G
i colAng1.NW_012115411v1       C 0 I 8
s saiBol1.JH378345                201753 233 +    465904 -CC-CCGTTTCCGTCCCAATT-CTATCTTGGAT-GACGAGAGACAGAGAGAGACGGAGACG----C--TCGCCAGGGCTG---------CGCTGCCAGGAGCTGTC-ACAGTCGATGACGTCCGGCTCTGTCCTTACCACGGTCTCCCCGGAGGACCCTGAGATGGACGGGAGAGCGAAGCCCACCCTG--------------AGCCGGTGCACGTGTGTCTGCGTGTGT----------CAGAGAC---CGAGGGA-CAGAGGCGctcccggggtcagg---g
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                216299 212 +  11138919 CTC-GAGATTCAGTCCAAATT-CAATCTTGGAT-TGGGAGAGA------------GACCTC----C--ATCCAAGGGCTTGGCTGCCC-GGCTGCCAAGAACTGTC-AGAAACCATCACATAACTTTCCACATTTCTAGAGGTCTCACTGGATTCCAGCGAGATTGACTGGTCAAA-CGGCACGGATTG--------------TGCGCACGTGTGCACATGTGTGCGTGT----------CGGAGAT---GGAGGGAGCATGT---------------------
i otoGar3.GL873584             C 0 C 0
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=16620.000000
s hg38.chrX_KI270880v1_alt        149560 4 +    284869 GTGT
s panTro5.chrX                    303343 4 + 155549662 GTGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208169 4 +    417917 GTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272614 4 + 180051392 GTGT
i rheMac8.chr6                 I 8 C 0
s macFas5.chrUn_KE146020            9545 4 -     71016 GTGT
i macFas5.chrUn_KE146020       I 8 C 0
s cerAty1.NW_012001098v1          174005 4 -   1025902 GTGT
i cerAty1.NW_012001098v1       I 8 C 0
s chlSab2.chrUn_KE147541v1        147065 4 -    811265 GTGT
i chlSab2.chrUn_KE147541v1     I 8 C 0
s manLeu1.NW_012108508v1          106729 4 -    350446 GTGT
i manLeu1.NW_012108508v1       I 8 C 0
s colAng1.NW_012115411v1          269688 4 +   1230721 GTGT
i colAng1.NW_012115411v1       I 8 C 0
s saiBol1.JH378345                201986 4 +    465904 gagt
i saiBol1.JH378345             C 0 I 625
s otoGar3.GL873584                216511 4 +  11138919 CTGT
i otoGar3.GL873584             C 0 C 0
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=257245.000000
s hg38.chrX_KI270880v1_alt        149564 104 +    284869 GT---AAGTGTGAGGTTCTGAACGCAAAGACAGGCCGTTCTGCTCACAATCCACAGGCCAGCGAC-CTTGTGGACCATTGCATTATGTATTAGCAATAtttattttca
s panTro5.chrX                    303347 104 + 155549662 GT---AAGTGTGAGGTTCTGAATGCAAAGACAAGCCGTTCTGCTCACAATCTGCAGGCCAGCGAT-CTTGTGGACCATTGCATTATGTATTAGCAATAtttattttca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208173 108 +    417917 GTTTAGAGTGTGAGGTTCTGAACGCAAAGACAAGCCGTTCTGCTCACAATCCGCAGGCCAGCGATGTTTGTGGACCATTGCATTATGTATTAGCAATAtttattttca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272618 104 + 180051392 TC---ACGTGGGAGGTTCTGAGAACAAACACAACTTGTTCCACTCAAAATCCGCAGGCCGGCGAT-GTCGTGGGCCCGTGCGTTCTGTACTCGCAATAGTTAttttca
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9549 104 -     71016 TC---ACGTGTGAGGTTCTGAGAACAAACACAACTTGTTCCACTCAAAATCCGCAGGCCGGCGAT-GTCGTGGGCCCGTGCGTTCTGTACTCGCAATAGttattttca
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          174009 104 -   1025902 TC---ACGTGTGAGGTTCTGAGAACAAACACAAGTTGTTCCACTCAAAATCCGCAGGCCGGCGAT-GTCGTGGGCACTTGCGTTGTGTATTCGCAATAGttattttca
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        147069 104 -    811265 TC---ACGTGTGAGGTTCTGAGAACAAACAGAAGTTGTTCCACTCAAAATCCGCAGGCTGGCGAT-GTCGTGGGCGCTTGCGTTGTGTATGCGCAATAGttattttca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106733 104 -    350446 TG---ACGTGTGAGGTTCTGAGAACAAACACAAGTTGTTCCACTCAAAATCCGCAGGCCGGCGAT-GTCGTGGGTGCTTGCGTTGTGTATGCGCAATAGttattttca
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269692 104 +   1230721 TG---ACGTGTGAGGTTCTGAGAACAAACACAAGCTGTTCCGCTCAAAATCCACAGGCCAGCGTT-GTCGTGGGCCCTTGCGTTCTGTATTCGCAATAGttattttca
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                216515  84 +  11138919 ----------------------GGGAAAGATAGGA-ATTCCACTCAGAGGCTGAAGGCCCACGGT-GCTGCCTGCAGTTGTGTTATTTATTAATGGTGCTTGTTATGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=156244.000000
s hg38.chrX_KI270880v1_alt        149668 62 +    284869 ttttatgattttatttatttga-gacagcttcttggtctgtcgcccatgctggagggcagtgg
s panTro5.chrX                    303451 62 + 155549662 ttttatggttttatttatttga-gacagcttcttcgtctgtcgcccatgctggagggcagtgg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208281 62 +    417917 ttttatgattttatttatttgaggacagcttcttggtctgtcgccattgctgga-ggcagtgg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272722 62 + 180051392 ttttattattttatttatttga-gacaacgtgttgctctgtcacccaggctggagtgcagtgg
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9653 62 -     71016 ttttattattttatttatttga-gacaacgtgttgctctgtggcccaggctggagtgcagtgg
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          174113 62 -   1025902 ttctattattttatttatttga-gacaacgtcttgctctgtcgcccaggctggagtgcagtgg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        147173 62 -    811265 ttttattattttatttatttga-gacaacgtcatgctctgtcccccaggctggagggcagtgg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106837 61 -    350446 ttttattattttatttatttga-gacaacgtgttgctctgtcgcccaggctggagtgcaa-gg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          269796 62 +   1230721 ttttactattttgtttatttga-gacaacgtcttgctctgtggcccaggctggagggcagtgg
i colAng1.NW_012115411v1       C 0 I 88
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=12623.000000
s hg38.chrX_KI270880v1_alt        149730 7 +    284869 tgcaatc
s panTro5.chrX                    303513 7 + 155549662 tgcaatc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208343 7 +    417917 tgcaatc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272784 7 + 180051392 tgggatc
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9715 7 -     71016 tgggatc
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          174175 7 -   1025902 cgcgatc
i cerAty1.NW_012001098v1       C 0 I 3790
s chlSab2.chrUn_KE147541v1        147235 7 -    811265 tgggatc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          106898 7 -    350446 tgcgatc
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599 0 +  11138919 C
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=138046.000000
s hg38.chrX_KI270880v1_alt        149737 93 +    284869 atagctcactgcagccttgatcttccaggctcaagaaatcttccctcctcagcctcccaactagctgggactacaggtgcatgccaccatgcc
s panTro5.chrX                    303520 93 + 155549662 atagctcactgcagccttcatcttccaggctcaagaaatcttccctcctcagcctcccaactagctgggactacaggtgcatgccaccatgcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208350 93 +    417917 atagctcactgcagccttgatcctccaggctcaagaaatcttccctcctcagcctcccaactagctgggactacaggtgcatgccaccatgcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272791 93 + 180051392 tcggctcactgcaacctctgcctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggtgtgtggcatcatgtc
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020            9722 93 -     71016 tcggctcactgcaacctctgcctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggtgtgtgccatcatgtc
i macFas5.chrUn_KE146020       C 0 C 0
s chlSab2.chrUn_KE147541v1        147242 93 -    811265 tcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccaccacgcc
i chlSab2.chrUn_KE147541v1     C 0 I 312
s manLeu1.NW_012108508v1          106905 93 -    350446 atagctcacggcagcctccatctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggtgcgtgccatcatgtc
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=335139.000000
s hg38.chrX_KI270880v1_alt        149830 309 +    284869 tgtcta----ttttttttttttt----ggaggcagggt-cagtcacccaggctggagagcagcggtgtgatcttggcttaccacaacctccgcctcccaggttc-aagcgattctcctgtgtcagcctcccgagtagctgggatgacaggcacccgccaccacgtctggctaa-tttttgtattttcagtagagacagggtttcaccaagctggccacgctggactcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattataggcgtgagccaccacgccgggccCATACCTGGCtat---
s panTro5.chrX                    303613 310 + 155549662 tgtctattttttttttttttttt----ggaggcagggt-ctgtcgcccaggctggagagcagcggtgcgatctcgactcactgcaacctccgcctcccaggttc-aagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgtctggctaa-tttttgtattttcagtagagacagggtttcaccaagttggccacgctggactcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgccgggcccatacttggc------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208443 311 +    417917 tgtctattttttttttttttttttttgggaggcagggtcctgtcaccca-gctggagtgcaggggtgcgatcttggctcactgcaacctccgcctcccaggttcaaagcgattctcctgtgtcagcctcccaactagctgggatgacatgcacccgcca-cacgtctggctaattttttgtattttcagtagagaca-ggtttcaccaagttggccacgctggactcgaactcctgacctcaggtgatccgcccg-ctcggcct-ccaaagtgctgggattacaggcgtg-gccaccacgccgggcccatacctggc------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143272884 311 + 180051392 tgccta--tttatttattttttt----ggaggcagggt-ctgtcgcccaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctcccgggttc-aagcgattctcctccctcaacctcctgagtagctgggactacaggtgcccggcaccatgcccggctaa-tttttgtattttcagtagagatggggtttcaccaagtgggccaggctggactcgataacctgacctcaaatgatccgcccgcctcggcctcccaaagcgctgggatgacaggcgtgagccaccgcacctggcccatacctggc---tat
i rheMac8.chr6                 C 0 I 725
s macFas5.chrUn_KE146020            9815 311 -     71016 tgccta--tttatttattttttt----ggaggcagggt-ctgtcgcccaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctcccgggttc-aagcgattctcctgcctcagcctcctgagtagctgggactacaggtgcccggcaccacccccagctaa-tttttgtattttcagtagagatggggattcaccaagtgggccaggctggactcgatgacctgacctcaagtgatccgcccgcctcggcctcccaaagcgctgggatgacaggcgtgagccaccgcacctggcccatacctggc---tat
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          106998 310 -    350446 tgccta--tttatttattttttt----ggaggcagggt-ctgtcgcccaggctgcagtgcagtggtgggatctcggctcactgcaacctctgcctcccaggttc-aagcgattctcctgtgtcagcctcctgagtagctgggattacaggtgcccggcacctcgcccggctaa-tttttgtattttcagtagagacgaggtttctccaagtgggccaggctggtctcgatctcctgacctcaagtgatccgcccgccttggcctcccaaagcgctgggatgataggcgtgagccaccgtgcccggcccatacctggc---ta-
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599   0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858  88 +   1230721 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=-2715.000000
s hg38.chrX_KI270880v1_alt        150139 15 +    284869 atatatatatatata------
s macFas5.chrUn_KE146020           10126 15 -     71016 ------ttttttttaaatgtt
i macFas5.chrUn_KE146020       C 0 I 71
s manLeu1.NW_012108508v1          107308  2 -    350446 ----------------at---
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e panTro5.chrX                    303923  0 + 155549662 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e gorGor5.CYUI01015925v1          208754  0 +    417917 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=854.000000
s hg38.chrX_KI270880v1_alt        150154 19 +    284869 tatatatatatatatatat
s panTro5.chrX                    303923 17 + 155549662 --tatatatatatatatat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208754 17 +    417917 --tctctctctatatatat
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1          107310  1 -    350446 ------------------t
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10141 71 -     71016 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=51476.000000
s hg38.chrX_KI270880v1_alt        150173 82 +    284869 atattttaatgttttgtagagatgggggtctc-actatattgcaaaccaggctggtctcaaacccttgggctcaagtgatcct
s panTro5.chrX                    303940 82 + 155549662 atattttaatgttttgtagagatgcgggtctc-actatattgcaaaccaggctggtctcaaacccttgggctcaagtgatcct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208771 78 +    417917 ---ttttaatgttttgtagagatggggatctcaactatattgc-aaccaggctggtctcaaaccctt-ggctcaagtgatcct
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           10212 78 -     71016 attttttaaacttttgtacagatg-aggcctc-actatgttgc---ccaggctgctttcaaactcctggactcaagtgatcct
i macFas5.chrUn_KE146020       I 71 C 0
s manLeu1.NW_012108508v1          107311 78 -    350446 tttttttaatgttttgtagagatg-gggtctc-actatgttgc---ccaggctggtctcaaacgcttgggctcgagggatcct
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=16314.000000
s hg38.chrX_KI270880v1_alt        150255 40 +    284869 cccacatcagcctcccaaagtgctgggatta--------------------------------taTATTTAT
s panTro5.chrX                    304022 40 + 155549662 cccacatcagcctcccaaagtgctgggatta--------------------------------TTTATTCAT
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020           10290 72 -     71016 cccacatcagcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccAGCAGGttctcttcat
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          107389 40 -    350446 cccacatcagccttccaaagtgctgggatta--------------------------------TTTATTTAT
i manLeu1.NW_012108508v1       C 0 I 1914
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e gorGor5.CYUI01015925v1          208849  0 +    417917 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=43384.000000
s hg38.chrX_KI270880v1_alt        150295 231 +    284869 CTACttttgagatggagtctcgcgctgtcgcccaggctggagtgcagtggcatgagctcggctcaccgcaaactccgcctcccgggttcaagcgatcctcctgcctcagcctcccgaggagctgggattacaggcgcccgccaccacgcccggctaa--ttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgatctca--tgatcca
s panTro5.chrX                    304062 231 + 155549662 CTGtttttgagacggagtctcactctgttgcccaggctggagtgcagtggcttgagcttggctcaccgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctctcgagtagctgggattacaggcacccgccaccacacccggctaa--ttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctca--tgatcca
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020           10362 235 -     71016 tttttcctgacacagggtcttgctgtgtcacccaggctggagtgcagtggcgtgatcatggctcactgcagcttctacatcctaggctcgagtgaccctcacacctcagccttctgagtatctgggatgacagacacacaccaccacgcccagctaagtttttgatgtttttgtacatagaggatctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcca
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599   0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858  88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e gorGor5.CYUI01015925v1          208849   0 +    417917 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=17133.000000
s hg38.chrX_KI270880v1_alt        150526 40 +    284869 cccacct-cagcctcccgaagtgctgggatgagagg-tgtga
s panTro5.chrX                    304293 40 + 155549662 cccacct-cagcctcccgaagtgctgggatgagagg-tgtga
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208849 42 +    417917 cccacctccagcctcccgaagtgctgggatgagaggttgtga
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           10597 40 -     71016 ccctcct-cggcctcccaaagtgctaggattgcagg-tgtga
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          269858 88 +   1230721 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=76281.000000
s hg38.chrX_KI270880v1_alt        150566 144 +    284869 gccaccgcacctggc-------TACttttgtattttgagt--agagatggaatttcaccatgttggtctggctgg-------------------------------tctcgaactcctgacctctagtgatccacctgccttggcctcccaaactgctgggatgacaggcatgagccaccgtgc
s panTro5.chrX                    304333 144 + 155549662 gccactgcacctggc-------TAAttttgtattttgagt--agagatggaatttcaccatgttggtcaggctgg-------------------------------tctcgaactcctgacctctagtgatccacctgccttggcctcccaaagtgctgggatgacaggcatgagccaccgtgc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          208891 142 +    417917 gccaccgcacctggc-------TAAttttgtattttgagt--aggatgggaatttcaccatgttggtcaggctgg-------------------------------tctcggactcccgacctctagtgatccacctgc--tggcctcccaaagtgctgggatgacaggcatgagccaccatgc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           10637 184 -     71016 gcccctgtgcttggccAGCAGTTAATCTCTCTCtttttcttctgagacagagtctcgctctgtcacccaggctggagtgcggtggcccggtctgagctcactgcaaactccacctcccgggttcaagcaattctactgcctcagcctcccgagtagctgagattacaggtgcgtgctaccacac
i macFas5.chrUn_KE146020       C 0 C 0
s colAng1.NW_012115411v1          269946 141 +   1230721 gccaccgcgcccggc-------taattttttacttttaat--agagacggggtttctccatgttggtcaggctgg-------------------------------tcttgaactcccgacctcaggtgatccacctgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccA---
i colAng1.NW_012115411v1       I 88 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599   0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=6404.000000
s hg38.chrX_KI270880v1_alt        150710 17 +    284869 cctgcc-TGGGATTATTA
s panTro5.chrX                    304477 17 + 155549662 cctgcc-TGGGATTATTA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          209033 17 +    417917 tctgcc-TGGGATTATTA
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          270087 15 +   1230721 ---GCCATGGGATTAGTA
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216599  0 +  11138919 C
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821  0 -     71016 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=41085.000000
s hg38.chrX_KI270880v1_alt        150727 67 +    284869 TCACAAATAACACCTATTCATTT-----TTACAAACCATATTTATGTAGTTATTCAAACCTAGGGCT-AAAAA
s panTro5.chrX                    304494 67 + 155549662 TCACAAATAACACCTATTCATTT-----TTACAAACCATATTTATGTAGTTATTCAAACCTAGGGCT-AAAAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          209050 68 +    417917 TCACAAATAACACCTATTCATTT-----TTACAAACCATATTTATGTAGTTATTCAAACCTAGGGCTAAAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          270102 67 +   1230721 TTATGAATGACACCTGTTCATTG-----TTACAAACCATATTTACGTAGTTATTTGAACCCAGGGCC-AAAAA
i colAng1.NW_012115411v1       C 0 M 4830
s otoGar3.GL873584                216599 71 +  11138919 TCAGAGATGGTACATTTTCATTGTATTATAATAAACCATATTCAT-TGGTGGTTTGAATCTAGGGCT-AAGAA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821  0 -     71016 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=7419.000000
s hg38.chrX_KI270880v1_alt        150794 15 +    284869 TGATGTGGCTGCTGG
s panTro5.chrX                    304561 15 + 155549662 TGATGTGGCTGCTGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          209118 15 +    417917 TGATGTGGCTGCTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                216670 15 +  11138919 TTAGGTGGCTGCTGG
i otoGar3.GL873584             C 0 I 190
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821  0 -     71016 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=115539.000000
s hg38.chrX_KI270880v1_alt        150809 468 +    284869 GGTGACCTTTGGGGTAGGATC-GGGAATTGGGGTGTAG--CCCTCCTCCAGGCTCCATAGACCTCAGCCCCCCCAAGTTCTGTTTCTGACTTGTTCATGCTCAGAAAGTTGTCAGGGACGGCCTGGGTTTCTTTCCCACCTTCCTTGTTTGGGAGGAAGGTTCTGGAATCCtttttttttttttttttagatggaattttgctcttgttgcccaggctggagtgcaatggtgccaactcagctcactccaacctccacctcccgggttcaa-gccattctcctgcctcagcctcccgagtagctggaattacaggcatgagccaccacaccc-ggctaatgtttgtatttttagtagagacgggatttcaccacgttggccaggctggtctcgaactcgcgacctcaggtgatcttcccgcctcggtctcccaaagtgttggggttacaggcgtgagcctccgcgcccagccG
s panTro5.chrX                    304576 468 + 155549662 GGTGACCTTTGGGGTAGGATC-GGGCATTGGGGTGTAG--CCCTCCTCCAGGCTCCATAGACCTCAGCCCCCCAAAGTTCTGTTTCTGACTTGTTCATGCTCAGAAAGTTGTCAGGGACGGCCTGGGTTTCTTTCCCACCTTCCTTGTTTGGGAGGAAGGTTCTGGAATCCtttttttttttttttttagatggaattttgctcttgttgcccaggctggagtgcaatggtgccaactcagctcactccaacctccacctcccaggttcaa-gccattctcctgcctcagcctcccgaatagctggaattacaggcacctgtcaccacgccc-ggctaatttttgtatttttagtagagacggcttttcaccacgttggccaggctggtctcgaactcgcgacctcaggtgatcctcccgcctcggtctcccaaagtgttggggttacaggcgtgagcctccgcgcccagccG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          209133 468 +    417917 GGTGACCTTTGGGTAGGGATCGGGGCATTGGGGTGTAAGCCCTTCCTCCAGGCTCCATAGACCTCAGCCCCCC-AAGTTCTGTTTCTGACTTGTTCATTCTCAGAAAGTTGTCAAGGACGGCCTGGATTTCTTTCCCACCTTCCTTGTTTGGGAGGAAGGTTCTGGAATCC-ttttttttttttttttagatggaattttgctcttgttgcccaggctggagtgcaatggtgccatctcagctc-ctgcaacctccacctcccaggttcaaggccattctcctgcctcagcctctcgagtagctggaattacaggcacctgccaccacgcccgggctaatttttgtatttgt-gaagagacgggttttcaccatgttggccaggctggtctcgactccgcgacctcaggtgatc-tcccgcctcggtctcacaaagtgttggggttacaggcgtgagcctccgcgcccagccG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                216685 190 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=49493.000000
s hg38.chrX_KI270880v1_alt        151277 162 +    284869 GGTTCT-GGAATCTTGAAGCTCCCCAGACACCAA-GGCTGGATGGAAAGTTAGGCCATCAGAAAGCAAATGGGGAGAGGCTCGTGGGAAT-----------------AGCGTGGGCCTC-------------------------------------------------ATGTAGTG--------------TTTTGCTTTATGTGAAATGGGGCAG--CAAAAAACAGCTGTTCCCTCCACCCCCCA
s panTro5.chrX                    305044 162 + 155549662 GGTTCT-GGAATCTTGAAGCTCCCCAGACACCAA-GGCAGGATGGAAAGTTAGGCCATCAGAAAGCAAATGGGGACAGGGTTGTGGGAAT-----------------AGCGTGGGCCTC-------------------------------------------------ATGTAGTG--------------TTTTGCTTTATGTGAAATGGGGCAG--CAAAAAACAGCTGTTCCCTCCACCCCCCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          209601 166 +    417917 GGTTCTGGGAATCTTGAAGCTCCCCAGACACCAAGGGCTGGATGGAAAGTTAGGCCATCAGAAAGCAAATGGGGAGAGGGTCGTGGGAAT-----------------AGCGTGGGCCTC--------------------------------------------------TGTAGTG-------------TTTTTGCTTTATGTGAAATGGGGCAGAAAAAAAAACAGCTGTTCCCTCCACCCCCCC
i gorGor5.CYUI01015925v1       C 0 I 1
s otoGar3.GL873584                216875 239 +  11138919 GGTTCT-AGAATCTGGAAGCTCCCCTGAGTCCAA-GGCTGGGTGGAAAGTTAGGCTGTGAGAAGCAAAATGGGGAG-GGGTCCTGGGAGTTCAGCCTCTCAGAACAGAGCTGGGGGCTCCTCTGTGGGTGGTCCTGGCCCCAGTTCCCTGGCCAGAAATCCAAGATGGATGTGGCTCCCAACCTCGTAATTCTTGTGCTATATAAAACATGGCAG----GGAAACTACCCCTGCGCCCAGCCCCCA
i otoGar3.GL873584             I 190 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C
e panPan2.chrUn_NW_014024190v1     52119 2504 -    177848 I

a score=131287.000000
s hg38.chrX_KI270880v1_alt        151439 206 +    284869 -GGCTGGAAAATTTATCTCCAGTATTCATTCTGGT-AAATGAATGC-CTGTGTGTTAGTAAGAGGGGAAGGAGCTGCTAGTCCTTGAGGTCAGCTGAAACCTCCTTCAGAGCCTCCAGCCTGGCCTTGAGACCGGCTCACCACATGTGAGCAGCCAGGAGCCCCGCCAAGACCTGC-TGTTGCCCCTCCTTCCTGCCCTGCCCCAGTGCC
s panTro5.chrX                    305206 206 + 155549662 -GGCTGGGAAATTCATCTCCAGTATTCATTCTGGT-AAATGAATGC-CTGTGTGTTAATAAGAGGGGAAGGAGCTGCTAGTCCTTGAGGTCAGCTGAAACCTCCTTCAGAGCCTCCAGCCTGGCCTTGAGCCCGGCTCACCGCATGTGAGCAGCCACGACCCCCGCCAAGACCTGC-TGTTGCCCCTCCTTCCTGCCCTGCCCCAGTGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     54623 206 -    177848 -GGCTGGGAAATTTATCTCCAGTATTCATTCTGGT-AAATGAATGC-CTGTGTGTTAGTAAGAGGGGAAGGAGCTGCTAGTCCTTGAGGTCAGCTGAAACCTCCTTCAGAGCCTCCAGCCTGGCCTTGAGCCCTGCTCACCGCATGTGAGCAGCCAGGACCCCCGCCAAGACCTGC-TGTTGCCCCTCTTTCCTGCCCTGCCCCAGTGCC
i panPan2.chrUn_NW_014024190v1 I 2504 C 0
s gorGor5.CYUI01015925v1          209768 205 +    417917 -GGCTGGGAAATTTATCTCCAGTATTCATTCTGGTAAAATGAATGC-CTGTGTGTTAGTAAGAGGGGAAGGAGCTGCTAGTCCTTGAGGTCAGCTGAAACCTCCTTCAGAGCCTGCAGCCTGGCCTTGAGCCCGGCTCACCGCATGTGAGCAGCCA-GAGCCCCGCCAAGACCTGC-TGTTGCCCCTCCTTCCTGCCCTG-CCCAGTGCC
i gorGor5.CYUI01015925v1       I 1 C 0
s otoGar3.GL873584                217114 197 +  11138919 GACCTGGGAGATTTATCTCCAGCATTAATTTTGTG-AAATGAATGTGGTGTGTGTTGGGGAGAGGTGGGGAGGCC-CCCGTCCTTCCCGTCTGCTGAAACTTCATTAGCAGTCTCCACCTT----CTGCGTCCCCTCCCCTTCGTGC------CCA-GGACCCTGCGAAGACCTGCACCTCGGCCCCCCTCCCTGCTCTGGCCCGACACC
i otoGar3.GL873584             C 0 I 232
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=438376.000000
s hg38.chrX_KI270880v1_alt        151645 860 +    284869 GGGGTCCTGTGGATGTAGAttttttcttt---ttttttttttgagatggagtttcgctcttgtcccttaggctggacagcaatggcgcgatctctgctcaccacaacctccgcctcccaggttcaagccattctcctgcctcagcctccggagtagctgggattacaggcacccgccacca---cttgtaaattttgtatttttagtagagatggggtttcaccctgtt-ggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccgctgtgccgggccTGTTGATTCTTATCTGGCTTTCATGGGACCACAGGggctcctgaaagtgtgaaacagagaatttccatagaacccagtaataccccagctaagtatgtacctaaaagaatagaaaggaggggccgggaacagtgactcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctcaggtcgggagttggagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccaagggcgtggaggtgcctgcctgtaatttcagct--actgaggaggctgaggcaagagaatcccttgaacccgggaggcggacgttgtggtgagccgagatggcgccatttcactccatcctgggcaacaagagtgaaactccgtctcaaaaaaaagaaagagggactggaagagatatctgctcgctcacgtttgtaggagcacacacatggaaaccatccaggtgtccctcagtggatgaatcgataaacaaacagtgg-ttcactcactttg-tgcccacccagt
s panTro5.chrX                    305412 865 + 155549662 GGGGTCCTGTGGATGTAGAttttttctttttcttttttttctgagatggagtttcgcttttgtcccgtaggctggacagcagtggcgcaatctctgctcaccacaacctccgcctcccgggttcaagccattctcctgcctcagcctccggagtagctgggatgacaggcacccgccaccacgcccggctaattttgtatttttagtagagacggggtttcaccatgtt-ggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagctgctgcgccgggccTGTTGATTCTTATCTGGCTTCCACAGGACCACAGGggctcctgaaagtgtgaaacagagaatttccatagaacccagtaataccccagctaagtatgtacctaaaagaatagaaaggaggggccgggaacagtgactcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctcaggtcgggagttggagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccaagggtgtggaggtgcctgcctgtaatttcagct--actgaggaggctgaggcaagagaatcccttgaacccgggaggcggaggttgtggtgagccgagatagcgccatttcactccatcctgggcaacgagagtgaaactccgtctc-aaaaaaagaaagagggactggaagagatatctgctcactcacgtttgtaggagcacacacatggaaaccatccaggtgtccctcagtggatgaatccataaacaaacagtgg-ttcactcactttc-tgcccacccagt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     54829 863 -    177848 GGGGTCCTGTGGATGTAGAttttttctt----ttttttttttgagatggagtttcgctattgtcccttaggctggacagcaatggcgcaatctctgtttaccacaagctccgcctcccgggttcaagcgattctcctgcctcagcctctggagtagctgggattacaggcacccgccaccatgcctggctaattttgtatttttagtagagatggggtttcaccatgtt-gcccgggctggtcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccgctgcgccgggtcTGTTGATTCTTATCTGGCTTCCACGGGACCACAGGggctcctgaaaatgtgaaacagagaatttccatagaacccagtaataccccagctaagtatgtacctaaaagaatagaaaggaggggccgggaacagtgactcgcgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctcaggtcgggagttggagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccaagggcgtggaggtgcctgcctgtaatttcagctaaactgaggaggctgaggcaagagaatcacttgaacccgggaggcggaggttgtggtgagctgagatggcgccatttcactccatcctgggcaacaagggtgaaactccatctc-aaaaaaagaaagagggactggaagagatatctgctcactcacgttcgtaggagcacacacatggaaaccacccaggtgtccctcagtgggtgaatcgataaacaaactgtgg-ttcactcactttg-tgcccacccagt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          209973 864 +    417917 GGGGTCCTGTGGATGTAGAttttttcttttttttttttttttgagatggagttt-gctcttgtcgcttaggctggagagcaatggtgcaatctctgcttaccacaacctccgcctcccgggttcaagcgattctcctgccttagcctcccgagtagctgggattacaggtgcacaccaccatgcctggctaatttttgtattttagtagagacggggtttcaccatgttgggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggatgacaggcgtgagccgctgcaccgggccTGTTGA-TCTTATCTGGCTTCCACGGGGCCACAGGggctcctgaaaatgtgaaacagagaatttccatagaacccagtaataccccagctaagtatgtacctaaaagaatagaaaggaggggccgggaacagtgactcacgcctgtaatccagccacttt-ggaggccgaggcaggtggatcacctcaggtcgggagttggagaccagcctgaccaacatggagaaaccccgtctctactaaacatac-aaattagccaagggcgtggaggtgcctg-ctgtaatttcagctaaactgaggaggctgagggaagagaatcccttgaacccgggaggcggaggttgtggtgagccgagatggcgccatttcact-catcctgggcaacaagagtgaaactccatctc-aaaaaaagaaagagggactggaagagatatctgctcactcacgttcgtaggagcacacacgtggaaaacacccaggtgcccctcagtggatgaatcaataaacaaactgtggtttcactcactttgttgcccacccagt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e otoGar3.GL873584                217311 232 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=176944.000000
s hg38.chrX_KI270880v1_alt        152505 297 +    284869 ggagtactatacagccatgaaaaagaatgaggctgtgacctaggctgcaacgtggatacaccctgaagaagtcacactca------------------gcgatatttcctttggcttattgtacaatccccttacgtcaactgtcc-ggaagcggccaatgcacagagagagagctcagatgagtggttgccacaggctgtggg--gagggaatgaggaggaactgcttcctggggagggggtctccttttatggggagaaggatgttctggaagtagacagagggggtggttacacggcgcagtg-atgttctcaatg
s panTro5.chrX                    306277 299 + 155549662 ggagtactatacagccatgaaaaagaatgaggctgtgacctaggctgcaacgtggatacaccctgaagaagtcacgctca------------------gcgatatttcctttggcttattgtacaatccccttacgtcaactgtcc-ggaaccggccaatgcacagagagagagctcagataagtggttgccacaggctgtgggtagagggaatgaggaggaactgcttcctggggagggggtctccttttatggggagaaggatgttctggaagtagacggagggggtggttacatggtgcagtg-atgttctcaatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     55692 297 -    177848 ggagtactatacagccatgaaaaagagtgaggctctgacctaggctgcaacgtggatacaccctgaagaagtcacgctca------------------gcgatatttcctttggcttattgtacaatccccttacgtcaactgtcc-ggaaccggccaatgcac--agagagagctcagataagtggttgccacaggctgtggggagagggaatgaggaggaactgcttcctggggagggggtctccttttatggggagaaggatgttctggaagtagacagagggggtggttacatggtgcagtg-atgttctcaatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          210837 299 +    417917 ggagtacta-acagccatgaaaaagaatgaggctctgacctaggctgcaacgtggatacaccccgaagaagtcactttcg------------------gtgatatttcctttggcttattgtacaatcgccttacgtcaactgtccaagaaccggccaacgcacagagagagagctcagatga-tggttgccacaggctgtggggagagggaatgaggaggaactgcttcctggggagggggtctccttttatggggagaaggatgttctggaagtagacagagggggtggttacacggctcagtgaatgttctcaatg
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                217543 307 +  11138919 gaaatgttattcagccaggaaaaggaaggaggctctgacac---ctgctacgtggacg-aatctgagaaggtcgtggtccctgagggaagccagacatgagataatttgtgccacgtg-ggtgcgattccattatgtgaatctccc-agaatgggctgatccacagagatgggaagtggattg-tggttgtcaggggctgca----gaggggacgcagaatgagag-ttgatggggacagggcctccctctggggggaccagaatgcccaggacctggacagaggtggtggctgcacagctttgtaaatgcaccaaacg
i otoGar3.GL873584             I 232 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                201990 625 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=265310.000000
s hg38.chrX_KI270880v1_alt        152802 380 +    284869 ccactgagattttca---cggcggtta--aagtggtgagttttatgttgtgaaatttATGGTGAATTTCATATAATAC-------------GTTTTATGTCATTGCAGTGAAAAACAACACAATCCCGG--CCCTCCTACGGCCCCCGCCTTCCCTCTGTGTC-----------------------------------TGCGGTCTGTACCCTACGA---------------------ACGCCT-------------------AGGACGCTAGACGGGATCCCTCCCCACGGAGC----TATATAGGAAGGTGAACCCAGTCTGGGGTTCCTGAGCTGCTACGG--------CTCACTGCTTCCTTTCGGAAATTGGTGTATTGTCTTTGGAAAATGACTTCACACAAACCTGCTCA-------CAGATATACCCGGTCCCAGATATGCCTAAGTGAGCGGAGACTACCGTGTCCTGAAACAGCATCTTCTCTT
s panTro5.chrX                    306576 380 + 155549662 ccactgagattttca---cggcggtta--aagtggtgagttttatgttgtgaaatttATGGTGAATTTCATATAATAC-------------GTTTTATGTCATCGCAGTGAAAAACAACACAATCCCGG--CCCTCCTACGGCCCCCGCCTTCCCTCTGTGTC-----------------------------------TGCGGTCTGTGCCCTACGA---------------------ATGCCT-------------------AGGACACTAAGCGGGATCCCTCCCCACGGACC----TACATAGGAAGGTGAACCCAGTCTGGGGTTCCTGAGCTGCTACGG--------CTCACTGCTTCCTTTCGGAAATTGGTGTATTGTCTTTGGAATATGACTTCACACAAACCTGCTCA-------CAGATATACCCGGTCCCAGATATGCCTAAGTGAGCGGAGACTACCGTGTCCTGAAACAGCATCTTCTCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     55989 380 -    177848 ccactgagattttca---cggcggtta--aagtggtgagttttatgttgtgaaatttATGGTGAATTTCATATAATAT-------------GTTTTATGTCATCGCAGTGAAAAACAACACAATCCCGG--CCCTCCTACGGCCCCCGCCTTCCCTCTGTGTC-----------------------------------TGCGGTCTGTGCCTTATGA---------------------ACGCCT-------------------AGGACACTAGACGGGATCCCTCCCCACAGAGC----TCTATAGGAAGGTGAACGCAGTCTGGGGTTCCTGAGCTGCTACGG--------CTCACTGCTTCCTTTCGGAAATTGGTGTATCGTCTTTGGAAAATGACTTCACACAAACCTGCTCA-------CAGATATACCCGGTCCCAGATATGCCTAACTGAGCGGAGACCACTGTGTCCTGAAACAGCATCTTCTCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          211136 379 +    417917 ccactgagattttca---cggcggtta--aagtggtgagttttatgttgtgaaatttATGGTGAATTTCATATAATAC-------------GTTTTATGTCATCGCAGTGAAAAACAACACAATCCCGG--CCCTCCTACGGCCCCCGCCTTCCCTCTGTGTC-----------------------------------TGCGGTCTGTGCCCTGAGA---------------------ACGCCT-------------------AGGACACTAGACGGGATCCCTCCCCACGGAGC----TATATAGGAAGGTGAACCCAGTCTGGGGTTCCTGAGCTGCTACGG--------CTCACTGCTTCCTTTCGGAAATTGGTGTATCGTCTTTGGAAAATGACTTCACACAAACCTGCTCA-------CAGATCTACCCGGTCCCAGATATGCCTAAGTGAGCGGAGACCACTGTGTCCTGAAACAGCATCTTCTC-T
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                202615 429 +    465904 ccgCTGAG-TTCCCA---CGGCGGTTAAGAAGTCGTGAGTTGTAGGTGGTGAGATGCGTGGAGAGTTTCGTGTCATAC-------------ACTTTATGTCACCTCAGTGAGAGATGATGCCATCCCGGGTCTCTCCCCACGCCCCTGTCTTCCGTCCCTGCCCCGAGGACCCCGCAGAGACGCCCTCCCCGTCGCCATGCTCCCCCCGCCCGAGGATACTGTAGGGATTCCGTTCCCACGCCCCCAACTTTCCTCCTCCTCGAGGTTGCTAGAGGGAACCGCTCCCCACCGAGC----TAACTGGGACG-----CTCAGT---GCGCTCCTGGCCTACGAGGG--------CTGTCTGCTTCCTTTCGGGAGTTTGTTGATTGCCTTTGGAAGAGAACGTCACACAGACTTGCCCA-------CGGATGCATCCGGTCCCCGGTGCGTCTCACTGAGCACACAC--ACATGTC-------------------G
i saiBol1.JH378345             I 625 C 0
s otoGar3.GL873584                217850 386 +  11138919 ttcctgagttgtgcagtttgaagtatg--aagtggtgaattgtgtgctgtgaaattcGTGATGAATTTCA-ATGATGAACTTCAGTTTAGGGTTTTATGTCAGCTGAGTGAGAGATAA---------AG--GCCTCTGCGGGCACCCACATTCCACCAGCGCT-----------------------------------GGCAGCCTGTGTCTTCTGA---------------------GAGCC--------------------GGGATG--AGGAAGGACCCGTCTCTGCCCAGTCAAGTGAATGACAACAGGGCTCCAGATGGAGGGCTCTGGGCTACTGTGGTGATGCCTTTCTTTGCTTTCTTCGGGCAGT---------GTGTTTGGAAAATGGTTTCACATAAACCTGTTCAAATGGCCCAAACTTCCCTGGTCC-------ACTGAAATTGGCAAAAATCACAGTGCCTGGAGGTAGAATCCTCTCCT
i otoGar3.GL873584             C 0 I 350
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=112874.000000
s hg38.chrX_KI270880v1_alt        153182 180 +    284869 TTAAAAAATGTTGTGttttttgttttgtcttttttcttttttttgagataggatctcactgtgttgcccaggctggagtgcaacagtgtaatcatagctcactgcagcctcaacttcccaggctcaagcgatcctcctgcctcagcctcccaaggagctgggat------------------------tacatgtgtgcaccac
s panTro5.chrX                    306956 158 + 155549662 TTAAAAAATG----------------------ttttttttttttgagataggatctcactgtgttgcccaggctggagggcagtggtgtgctcatagcccattgcagcctcaacctcctgggctcaagcaatcctcctgcctcagcctcccaaggagctgggat------------------------tacatgtgtgtgccac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56369 163 -    177848 TTAAAAAATGTTGTG-----------------ttttttttttttgagataggatctcactgtgttgcccaggctggagggcagtggtgtgctcatagcccattgcagcctcaacctcctgggctcaagcaatcctcctgcctcagcttcccaagtagctgggat------------------------tacatgtgtgtgccac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          211515 175 +    417917 TTAAAAAATGTTGTGTTTTttgttttg-----ttttgtttttttgagataggatctcactgtgttgcccaggctggagggcagtggtgtgctcatagcccattgcagcctcaacctcctgggctcaggcaatcctcctgcctcagcctcccaagtcgctgggat------------------------tacatgtgtgtgccac
i gorGor5.CYUI01015925v1       C 0 I 165
s saiBol1.JH378345                203044 184 +    465904 TTAAAAGCtttt--------------------gttttctttttggagacagggtctcactgtgttgccccggctggagtgcaatggtgccatcacggctcactgcggcctcagcttcccaggctcaagggatcctccggcctcagcctcccaagtggctgggactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctc
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=14324.000000
s hg38.chrX_KI270880v1_alt        153362 19 +    284869 catgcctggc-taatttttt
s panTro5.chrX                    307114 19 + 155549662 catgcctggc-taatttttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56532 20 -    177848 catgcctggcttaatttttt
i panPan2.chrUn_NW_014024190v1 C 0 I 1
s gorGor5.CYUI01015925v1          211855 19 +    417917 catgcctggc-TAAtttttt
i gorGor5.CYUI01015925v1       I 165 C 0
s saiBol1.JH378345                203228 19 +    465904 catgcctggg-taattcctt
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821  0 -     71016 C

a score=48100.000000
s hg38.chrX_KI270880v1_alt        153381 129 +    284869 gatcttttgtatagatgagacctcactatgttgcccaggctggagtgcatc-agtgtaat--catagctcactg-cagcctcaactt-cccaggctcaagcgatcctcctgcctcagcctcccaagtagctggg
s panTro5.chrX                    307133 125 + 155549662 gatcttttgtagagatgacacttcactgtgttgcccaggctggagtgcaac-agtgtaatgacatagctcactg-cagcctcaactt-------ctcaagcaatcctcctgcctctgcctcccaagaagctggg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          211874 131 +    417917 gatcttttgtagagatgagacctcactatgttgcccaggctggagtgcaacaaatgtaat--catagctcactg-cagcctcaacttccccaggctcaagcgatcctcctgcctcggcctcccaagtagctggg
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                203247 131 +    465904 aatcatttgtagaaatgagacctcactgtgtcgcccaggctagAACgcaat-cgtgggatt-tatggcgcacttccagcctccacgg-cctgggcttgggccatcctcctgcctcggcctcccaagtacctggg
i saiBol1.JH378345             C 0 I 5302
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C
e panPan2.chrUn_NW_014024190v1     56552   1 -    177848 I

a score=6727.000000
s hg38.chrX_KI270880v1_alt        153510 37 +    284869 actaca---tgtgtgcgccaccacgcccggcTAAGttttt
s panTro5.chrX                    307258 37 + 155549662 actaca---tgtgtgcgccatcaggcctggcTAAtttttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          212005 40 +    417917 actgcaatgtgtgtgcccacccacgcccggctaagttttt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821  0 -     71016 C
e panPan2.chrUn_NW_014024190v1     56552  1 -    177848 I

a score=74195.000000
s hg38.chrX_KI270880v1_alt        153547 152 +    284869 gatcttttg--tggagatcaggcctcactatgttgcccaggctggagtgcagtggtgtaat--catagctcactgcagcctcaacttcccaggctcaagcgatcctcccacctcagccttctaagtatgtgggattacagacat-gcaccatcacgc
s panTro5.chrX                    307295 152 + 155549662 gatcttttg--tagagatcaggcctcactatgttgcccaggctggagtgcagtggtgtaat--catagctcactgcaggctcaacttcccaggctcaagcaatcctcccacctcagccttctaagtatctgggattacagacat-gcaccatcacgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56553 156 -    177848 gatcttttgtttagagatcaggcctcactatgttgcccaggctggagtgcaatagtgtaatgacatagctcactgcaggctcaacttcccaggctcaagcaatcctcccacctcagccgtctaagtatctgggattacagacat-gcaccatcacgc
i panPan2.chrUn_NW_014024190v1 I 1 C 0
s gorGor5.CYUI01015925v1          212045 151 +    417917 gatcttttg--tggagatgaggcctcactatgttgcccaggctggagtgcaacagtgtaat--catag-tcactgcagcctcaactttccaggctcaagc-atcctctcacctcagccttctaagtatctgggattacagacatggcaccatcacgc
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           10821   0 -     71016 C

a score=17623.000000
s hg38.chrX_KI270880v1_alt        153699 34 +    284869 ccagctaagtttttgatttcttt-tggtacataca
s panTro5.chrX                    307447 34 + 155549662 ccagctaagtttttgattttttt-tggtacataca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56709 32 -    177848 ccagctaagtttttgattttttt---gtacataca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212196 35 +    417917 ccagctaagtttttgattttttttttgtacataca
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           10821 31 -     71016 ctggctaatttttgtatttt----tagcagagacg
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143273195 725 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=176246.000000
s hg38.chrX_KI270880v1_alt        153733 153 +    284869 gggtctcactatgttgcccaggctggtcttgaattcctgggctcaagtgatcctcactcctcggcctcccaaagtgctgagattacaggcgtgagccaccatgcctggccTCTTTTTTTGTTTTTGAGACAAGGTCTGAAATAACAACTATCT
s panTro5.chrX                    307481 152 + 155549662 gggtctcactatgttgcccaggctggtcttgaattcctgggttcaagggatcctcactcctcagcctcccaaagtgctgagattacaggcgtgagccaccatgcctggccTC-TTTTTTGTTTTTGAGACAAGGTCTGAAATAACAACTATCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56741 151 -    177848 gggtctcactatgttgcccaggctggtcttgaattcctgggctcaagtgatcctcattcctcagcctcccaaagtgctgaggttacaggcgtgagccaccatgcctggcctc--tttttgtttttgagacaaggtCTGAAATAACAACTATCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212231 152 +    417917 gggtctcactatgttgcccaggctggtcttgaattcctgggctcaagtgatcctcactcctcggcctcccaaagtgctgagattacaggcgtgagccaccatgcctggcctc-ttttttgtttttgagacaaggtGTGAAATAACAACtatct
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143273920 153 + 180051392 gggtttcactatgttggccgggctggtctcgaactcctgacctcaggtgatccacctgccttggcctttcaaagtgctgagattacaggcgtgaggcaccgcacccagccTTGTTTTTTCTTTTTGAGACAGGGTTTGAAATAACAACTCTCT
i rheMac8.chr6                 I 725 C 0
s macFas5.chrUn_KE146020           10852 153 -     71016 gggtttcactatgttggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctttcaaagtgctgagattacaggcgtgaggcaccgcacccagccTTGTTTTTTCTTTTTGAGACAGGGTTTGAAATAACAACTCTCT
i macFas5.chrUn_KE146020       C 0 I 1071
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=-69.000000
s hg38.chrX_KI270880v1_alt        153886 1 +    284869 G
s panTro5.chrX                    307633 1 + 155549662 T
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          212383 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143274073 1 + 180051392 T
i rheMac8.chr6                 C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e macNem1.NW_012017243v1          258130 3377 +  25972781 I
e macFas5.chrUn_KE146020           11005 1071 -     71016 I
e panPan2.chrUn_NW_014024190v1     56892 0 -    177848 C

a score=17006.000000
s hg38.chrX_KI270880v1_alt        153887 27 +    284869 -TAAAAAAAAAAatatatat-----------atatatat
s panTro5.chrX                    307634 24 + 155549662 -TAAAAAAAAA---atatat-----------atatatat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56892 27 -    177848 -TAAAAatatatatatatat-----------gtatatat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212384 38 +    417917 -taaaaaaatatatatatatatatatgtataatatatat
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143274074 27 + 180051392 -AAAAAAAatatatatatat-----------atgtatat
i rheMac8.chr6                 C 0 I 1171
s macFas5.chrUn_KE146020           12076 27 -     71016 tataataaatat-tatatat-----------aaatatat
i macFas5.chrUn_KE146020       I 1071 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=90623.000000
s hg38.chrX_KI270880v1_alt        153914 184 +    284869 ggttttaatgttatatatataaggttttaatgttatatataaatgttttatatttatatatgacata-tataacat---tttaatgctatatacatataatgttttaatgttatatatacatacaaatatataa--atatatatatttttaaacagggtcttgctctgtcacctgggctggagtaccctg
s panTro5.chrX                    307658 184 + 155549662 agttttaatgttatatatataaggttttaatgttatatataaatgttttatatttatatatgacata-tataacat---tttaatgctatatacatataaagttttaatgttatatatacatacaaatatataa--atatatatatttttaaacaaggtcttgctctgtcacctgggctggagtgccctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     56919 185 -    177848 agttttaatgttatatatataaggttttaatgttatatataaatgttttatatttatatatgacata-tataacat---tttaatgctatatacatataat-ttttagtgttatatatacatacaaatatataaatatatatatatttttaaacagggacttgctctgtcacctgggctggagtgcgctg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212422 182 +    417917 agttttaatgttatatatataaggttttaatgtt-tatataaat-tttaatatttatatatgacatattataacat---tttaatgctatatacatataatgttttaatgttatatatacatacaaatatataa--atatatatatattttaaacaggtcttgctctgtca-ctgggctggagtgccctg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12103 117 -     71016 -----------tatatatataatattat-gtattatatataaaa-------atatatattaaatata-tataatatatatttaat---------atataatatataattataatatatac------atttgtgt--atatatatatTTTAAAAA------------------------------------
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          174182 3790 -   1025902 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e rheMac8.chr6                 143274101 1171 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt        154098 1 +    284869 g
s panTro5.chrX                    307842 1 + 155549662 g
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57104 1 -    177848 g
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212604 1 +    417917 g
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275272 1 + 180051392 g
i rheMac8.chr6                 I 1171 C 0
s macFas5.chrUn_KE146020           12220 1 -     71016 g
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          177972 1 -   1025902 g
i cerAty1.NW_012001098v1       I 3790 C 0
e manLeu1.NW_012108508v1          107429 1914 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=116592.000000
s hg38.chrX_KI270880v1_alt        154099 49 +    284869 tgtgatcac-agctcacggttgcttcgacctcctggtctccagcgatcct
s panTro5.chrX                    307843 49 + 155549662 tgtgatcac-agctgacggttgcttcgacctcctggtctccagcgatcct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57105 49 -    177848 tgtgatcac-agctcacggttgcttcgacctcctggtctccagcgatcct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212605 49 +    417917 tgtgatcac-agctcacggttgcttccacctcctggtctccagcgatcct
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275273 49 + 180051392 tgtgatcac-agctcacagttgcctcgacctcctgggcgccagcgatcct
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           12221 49 -     71016 tgtgatcac-agctcacagttgcctcgacctcctgggcgccagcgatcct
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          177973 50 -   1025902 tgtgatcacaagctcacggttgcctcgacctcctgggctccagcgatcct
i cerAty1.NW_012001098v1       C 0 I 1
s manLeu1.NW_012108508v1          109343 49 -    350446 tgtgatcac-agctcacggttgcctcgacctcctgggctccagcgatcct
i manLeu1.NW_012108508v1       I 1914 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e colAng1.NW_012115411v1          270169 4830 +   1230721 M
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=398220.000000
s hg38.chrX_KI270880v1_alt        154148 166 +    284869 cctgtctcagcctccccaaaatgctgggattaca---ggtgtgagccgccgctcctggccaGCACCTTCTCTTATGCGGTACCTGGAAAGTCCCACATCATGCGAACGTCTCCACCAGGTACCCGG-GAGGTGGCATTCGGGGAAT-GAGGGGGACCAGGGCTCAGAGCAT
s panTro5.chrX                    307892 166 + 155549662 cctgtctcagcctccccaaaatgctgggattaca---ggtgtgagccgccgctcctggccaGCACCTTCTCTTATGCGGTACCTGGAAAGTCCTACATCATGCGAACATCTCCACCAGATACCCGG-GAGGTGGCATTCGGGGAAT-GAGGGGGACCACGGCTCGGAGCAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57154 166 -    177848 cctgtctcagcctccccaaaatgctgggattaca---ggtgtgagccgccgctcctggccaGCACCTTCTCTTATGCGGTACCTAGAAAGTCCTACATCATGCGAACGTCTCCACCAGGTACCTGG-GAGGTGGCATTCGGGGAAT-GAGGGGGACCAGGGCTCAGAGCAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212654 159 +    417917 cctgcctcagcct-cccaaaatgctgggattaca---ggtgtgagccgccgctcctggccaGCACCTTCT-TTATGCGGTACCTGGAAAATCCTACATCACGCGAACGTCTCCACCAGGTACCCGG-GAGGTGGC-TTCGGGG--T-GA-GGGGACCA-GGCTCGGAGCAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275322 161 + 180051392 cccgtctcagcct-cccaaagtgctgggatgacagg-ggtgtgA------GCTCCCGGCCAGCACCTTCTCTTAGGCAGTGTCTGGCAAGTCCTGCACGTTGGGAAGGTCTCCACCAGGTACCCCA-GGGGTGGCACTGAGGGCAC-GAGGGGGACCAGGGCTCAGAGCAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           12270 161 -     71016 cccgtctcagcct-cccaaagtgctgggatgacagg-ggtgtgA------GCTCCCGGCCAGCACCTTCTCTTAGGCAGTGTCTGGCAAGTCCTGCACGTTGGGAAGGTCTCCACCAGGTACCCCA-GGGGTGGCACTGAGGGCAC-GAGGGGGACCAGGGCTCAGAGCAT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          178024 164 -   1025902 cccgtctcagcct-cccaaagtgctgggctgacaggaggtgtga------gcTCCTGGCCAGCACCTTCCTCTAGGCAGTATCTGGAAAGCGCTGTGCATTGGGAAGGTCTCCAGCAGGTACCCCAGGGGGTGGCACTGAGGGCACGGAGGGGGACCAGGGCTCAGAGCAT
i cerAty1.NW_012001098v1       I 1 I 281
s manLeu1.NW_012108508v1          109392 167 -    350446 cccgtctcagcct-cccaaagtgctgggatgacagg-ggtgtgagctgccgctcccgcccAGCACCTTCCCTTAGGCAGTGTCTGGAAAGCCCTGCGCATTGGGAAGGTCTCCACCAGGTACCCCA-GGGATGGCACTGAGGGCAC-GAGGGGCACCAGGGCTCAGAGCAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275009 167 +   1230721 cctgtctcagcct-cccaaaatgctgggaggacagg-ggtgtgagctgccgctcccggccAGCACCTTCTCTTAGGCAGTATCTGGAAAGTCCTGCACGTTGCGAAGGTCTCCACCAGGTACCCCA-GAGGTGGCATTGAGGGAAC-GAGGGGGACCAGGGCTCAGAGCAT
i colAng1.NW_012115411v1       M 4830 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=47270.000000
s hg38.chrX_KI270880v1_alt        154314 22 +    284869 CCCCAAAGTGGCTTCCTTGCCT
s panTro5.chrX                    308058 22 + 155549662 CCCCAAAGCGGCTTCCTTGCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57320 22 -    177848 CCACAAAGCAGCTTCCTTGCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212813 22 +    417917 CCCCAAAGCGGCTTCCTTGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275483 22 + 180051392 CCACAGGGCGGCCTCCTTGCCT
i rheMac8.chr6                 C 0 I 116
s macFas5.chrUn_KE146020           12431 22 -     71016 CCACAGGGCGGCCTCCTTGCCT
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109559 22 -    350446 CCACAGGATGGCCTCCTTGCCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275176 22 +   1230721 CCACAGGGCGGCTTCCTTGCCT
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=42398.000000
s hg38.chrX_KI270880v1_alt        154336 36 +    284869 CATAGGGTCACCCCCTTAG------CCCAGAGCTGGAG-----------GTGA
s panTro5.chrX                    308080 36 + 155549662 CATAGGATCATCCCCTTAG------CCCAGAGCTGGAG-----------GTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57342 36 -    177848 CATAGGATCATCCCCTTAG------CCCAGAGCTGGAG-----------GTGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212835 36 +    417917 CATAGAATCATCCCCTTAG------CCCAGAGCTGGAG-----------GTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12453 53 -     71016 GGTGGGATGAACCCCTGAGGTGAGTTCCAGGCCTGGACTGTTTCCAGGAGGGA
i macFas5.chrUn_KE146020       C 0 I 63
s manLeu1.NW_012108508v1          109581 36 -    350446 GGTGGGATGAACCCCTGAG------CCCAGAGCTGGAC-----------GTGA
i manLeu1.NW_012108508v1       C 0 I 93
s colAng1.NW_012115411v1          275198 36 +   1230721 GGTGGGATTAATCCCTGAG------CCCAGAGCTGGAG-----------GTGA
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e rheMac8.chr6                 143275505 116 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=5348.000000
s hg38.chrX_KI270880v1_alt        154372 2 +    284869 GT
s panTro5.chrX                    308116 2 + 155549662 GT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57378 2 -    177848 GT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212871 2 +    417917 GT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275621 2 + 180051392 GT
i rheMac8.chr6                 I 116 C 0
s macFas5.chrUn_KE146020           12569 2 -     71016 GT
i macFas5.chrUn_KE146020       I 63 C 0
s manLeu1.NW_012108508v1          109710 2 -    350446 GT
i manLeu1.NW_012108508v1       I 93 C 0
s colAng1.NW_012115411v1          275234 2 +   1230721 GT
i colAng1.NW_012115411v1       C 0 I 108
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt        154374 1 +    284869 G
s panTro5.chrX                    308118 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57380 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212873 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275623 1 + 180051392 G
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           12571 1 -     71016 G
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109712 1 -    350446 G
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275344 1 +   1230721 G
i colAng1.NW_012115411v1       I 108 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                218236 350 +  11138919 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=100854.000000
s hg38.chrX_KI270880v1_alt        154375 45 +    284869 GGGGCGTGAAAGAGGCATCTTCCCTTC----------CAGAGGGCGGCAGTGGGG---
s panTro5.chrX                    308119 45 + 155549662 GGGGCGTGAAAGAGGCATCTTCCCTTC----------CAGAGGGCGGCAGTGGGG---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57381 45 -    177848 GGGGCGTGAAAGAGGCATCTTCCCTTC----------CAGAGGGCGGCAGTGGGG---
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212874 44 +    417917 GAGGCGTGAAAGAGGCAT-TTCCCTTC----------CAGAGGGCGGCAGTGGGG---
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275624 45 + 180051392 GGGGCATGAAAGCGGCGTCATCCCTTC----------CAGGGGGCGGCAGTGGGG---
i rheMac8.chr6                 C 0 I 74
s macFas5.chrUn_KE146020           12572 45 -     71016 GGGGCATGAAAGCGGCGTCATCCCTTC----------CAGGGGGCGGCAGTGGGG---
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109713 45 -    350446 GGGGCATGAAAGCGACGTCTTCCCTTC----------CAGGGGGTGGCAGTGGGG---
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275345 44 +   1230721 GGGGCATGAAAGAGGCATCTTGCCTTC----------CATGGGG-GGCAGTGGGG---
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218586 58 +  11138919 GGGAAATGAAAGGGGCCTTTTGCATTTTTTTTTTTGGTGGGGGTTGGTGGTGGTGGGA
i otoGar3.GL873584             I 350 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=4796.000000
s hg38.chrX_KI270880v1_alt        154420 5 +    284869 -TTGAA
s panTro5.chrX                    308164 5 + 155549662 -TTGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57426 5 -    177848 -TTGAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212918 5 +    417917 -TTGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12617 5 -     71016 -ATGGA
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109758 5 -    350446 -TTGAA
i manLeu1.NW_012108508v1       C 0 I 69
s colAng1.NW_012115411v1          275389 5 +   1230721 -TTGAA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218644 5 +  11138919 CATAA-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e rheMac8.chr6                 143275669 74 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=50868.000000
s hg38.chrX_KI270880v1_alt        154425 43 +    284869 TGGATAACTTTAAT---------CCTGACAC-ACGTATTTCAGAAGACCTACC
s panTro5.chrX                    308169 43 + 155549662 TGGATAACTTTAAT---------CCTGACAC-ATGTATTTCAGAAGACCTACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57431 43 -    177848 TGGATAACTTTAAT---------CCTGACAC-ACGTATTTCAGAAGACCTACC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212923 43 +    417917 TGGATCACTTTAAT---------CCTGACACAACGTATTTCAGAAGA-CTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12622 52 -     71016 CGAATCACTTGAATTTTAATGAAATAGGCAC-ACCTATTTCAGAAGAGCCACC
i macFas5.chrUn_KE146020       C 0 C 0
s colAng1.NW_012115411v1          275394 43 +   1230721 CGAATCACTTTAAT---------ATTGGTAC-ACCTATTTCAGAAGACCCACC
i colAng1.NW_012115411v1       C 0 I 61
s otoGar3.GL873584                218649 43 +  11138919 TTAATAGCTTTAAT---------TTCGGCAC-ACACATTTCAGAAGATCTACC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109763 69 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e rheMac8.chr6                 143275669 74 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=-1300.000000
s hg38.chrX_KI270880v1_alt        154468 1 +    284869 -G
s panTro5.chrX                    308212 1 + 155549662 -G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57474 1 -    177848 -G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212966 1 +    417917 -G
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12674 1 -     71016 -G
i macFas5.chrUn_KE146020       C 0 I 16
s otoGar3.GL873584                218692 1 +  11138919 T-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109763 69 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178188 281 -   1025902 I
e colAng1.NW_012115411v1          275437 61 +   1230721 I
e rheMac8.chr6                 143275669 74 + 180051392 I
e macNem1.NW_012017243v1          258130 3377 +  25972781 I

a score=156942.000000
s hg38.chrX_KI270880v1_alt        154469 39 +    284869 CCAACTTTCCAGCTATGGGCAGCAGGTGT-GATGAACACA
s panTro5.chrX                    308213 39 + 155549662 CCAACTTTCCAGCTACGGGCAGCAGGTGT-GATGAACACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57475 39 -    177848 CCAACTTTCCAGCTACGGGCAGCAGGTGG-GATGAACACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          212967 39 +    417917 CCAACTTTCCAGCTATGGGCAGCAGGTGT-GATGAGCACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275743 39 + 180051392 CCAACTTTCCAGCTGTGGGCAGCAGGTGT-GATGAACACA
i rheMac8.chr6                 I 74 C 0
s macFas5.chrUn_KE146020           12691 39 -     71016 CCAACTTTCCAGCTGTGGGCAGCAGGTGT-GATGAACACA
i macFas5.chrUn_KE146020       I 16 C 0
s macNem1.NW_012017243v1          261507 38 +  25972781 CCAACTTTCCAGCTGTGGGCAGCA-GTGC-GATGAACACA
i macNem1.NW_012017243v1       I 3377 I 101
s cerAty1.NW_012001098v1          178469 40 -   1025902 CCAACTTTCCAGGTCTGGGCAGCAGGTGTGGATGAACACA
i cerAty1.NW_012001098v1       I 281 C 0
s manLeu1.NW_012108508v1          109832 39 -    350446 CCAACTTTCCAGGTCTGGGCAGCAGGTGT-GATGAACACA
i manLeu1.NW_012108508v1       I 69 C 0
s colAng1.NW_012115411v1          275498 39 +   1230721 CCAACTTTCCAGCTCTGGGCAGCAGGTGC-AATGAACACA
i colAng1.NW_012115411v1       I 61 C 0
s otoGar3.GL873584                218693 39 +  11138919 TTAACCTTCCAGCTGTGGGCGAGAGAAAT-TATAAACAAA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I

a score=21825.000000
s hg38.chrX_KI270880v1_alt        154508 8 +    284869 CGGGCCCC
s panTro5.chrX                    308252 8 + 155549662 CGGGCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57514 8 -    177848 CGGGCCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213006 8 +    417917 CGGGCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275782 8 + 180051392 GGGGTCCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           12730 8 -     71016 GGGGTCCC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          178509 8 -   1025902 GGGGTCCC
i cerAty1.NW_012001098v1       C 0 I 125
s manLeu1.NW_012108508v1          109871 8 -    350446 GAGGTCCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275537 8 +   1230721 GGGGTCCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218732 8 +  11138919 TGAACTCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=-1520.000000
s hg38.chrX_KI270880v1_alt        154516  2 +    284869 ------------------GG-----
s panTro5.chrX                    308260  2 + 155549662 ------------------GG-----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57522  2 -    177848 ------------------GG-----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213014  2 +    417917 ------------------GG-----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275790  2 + 180051392 ------------------GG-----
i rheMac8.chr6                 C 0 I 95
s macFas5.chrUn_KE146020           12738  2 -     71016 ------------------GG-----
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109879  2 -    350446 ------------------GG-----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275545  2 +   1230721 ------------------GG-----
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218740 25 +  11138919 AAATTAGTCGAATACCTCGGAACCG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=20703.000000
s hg38.chrX_KI270880v1_alt        154518 18 +    284869 TGAGGG--------------CTGAATGGGCCC
s panTro5.chrX                    308262 18 + 155549662 TGAGGG--------------TTGAATGGGCTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57524 18 -    177848 TGAGGG--------------TTGAATGGGCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213016 18 +    417917 TGAGGG--------------TTGAATGGGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12740 18 -     71016 GAAGGG--------------TGGAATGGCCCG
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          109881 18 -    350446 GAAGGG--------------TGGAATGGGCCC
i manLeu1.NW_012108508v1       C 0 I 101
s colAng1.NW_012115411v1          275547 18 +   1230721 GAAGGG--------------TTGAAAGGCCCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218765 32 +  11138919 CAGGGGCGATATTTAATGCTTTGTACAGACTA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e rheMac8.chr6                 143275792 95 + 180051392 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=1405.000000
s hg38.chrX_KI270880v1_alt        154536 3 +    284869 -AGA
s panTro5.chrX                    308280 3 + 155549662 -AGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57542 3 -    177848 -AGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213034 3 +    417917 -AGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12758 3 -     71016 -GGA
i macFas5.chrUn_KE146020       C 0 C 0
s colAng1.NW_012115411v1          275565 3 +   1230721 -AGA
i colAng1.NW_012115411v1       C 0 I 61
s otoGar3.GL873584                218797 3 +  11138919 TGG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e rheMac8.chr6                 143275792 95 + 180051392 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=-4470.000000
s hg38.chrX_KI270880v1_alt        154539 13 +    284869 TGGCAG--------------------------------------------------------GGGCAGA
s panTro5.chrX                    308283 12 + 155549662 CGGCA---------------------------------------------------------GGGCAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57545 12 -    177848 CGGCA---------------------------------------------------------GGGCAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213037 12 +    417917 CGGCA---------------------------------------------------------GGGCAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12761 68 -     71016 CGGCAGAGTGATATCGAATCCTTTGTACCTCTGTGGGTCTGACACGTCT-GCAGTCTGGGGAGGGCGGA
i macFas5.chrUn_KE146020       C 0 C 0
s otoGar3.GL873584                218800 35 +  11138919 ----------------------------------TGGCCTGTCACGTCCAGCCACCTTGGGAGGGTGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e colAng1.NW_012115411v1          275568 61 +   1230721 I
e rheMac8.chr6                 143275792 95 + 180051392 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=5431.000000
s hg38.chrX_KI270880v1_alt        154552 4 +    284869 GAGG
s panTro5.chrX                    308295 4 + 155549662 GAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57557 4 -    177848 GAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213049 4 +    417917 GAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12829 4 -     71016 GAAG
i macFas5.chrUn_KE146020       C 0 I 2
s colAng1.NW_012115411v1          275629 4 +   1230721 GAGG
i colAng1.NW_012115411v1       I 61 C 0
s otoGar3.GL873584                218835 4 +  11138919 GACA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147335 312 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e rheMac8.chr6                 143275792 95 + 180051392 I
e macNem1.NW_012017243v1          261545 101 +  25972781 I

a score=112353.000000
s hg38.chrX_KI270880v1_alt        154556 37 +    284869 TTTGCATTCATTTTAATGTTCTC-AGAAACTAGG---------ATAA
s panTro5.chrX                    308299 37 + 155549662 TTGGCATTCATTTTAATGTTCTC-AGAAACTAGG---------ATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57561 37 -    177848 TTTGCATTCATTTTAATGTTCTC-AGAAACTAGG---------ATAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213053 38 +    417917 TTGGCATTCATTTTAATGTTCTCGAGAAACTAGG---------ATAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275887 37 + 180051392 TTTGCATTCATTTTAATGTTCTC-AGAAAGTAGG---------ATAA
i rheMac8.chr6                 I 95 C 0
s macFas5.chrUn_KE146020           12835 37 -     71016 TTTGCATTCATTTTAATGTTCTC-AGAAAGTAGG---------ATAA
i macFas5.chrUn_KE146020       I 2 C 0
s macNem1.NW_012017243v1          261646 37 +  25972781 TTTGCATTTATTTTAATGTTCTC-AGAAAGTAGG---------ATAA
i macNem1.NW_012017243v1       I 101 C 0
s chlSab2.chrUn_KE147541v1        147647 37 -    811265 TTTGCATTCATTTTAATATTCTC-AAAAACTAGG---------ATAA
i chlSab2.chrUn_KE147541v1     I 312 I 86
s colAng1.NW_012115411v1          275633 37 +   1230721 TTTGCATTCATTTTAATGTTCTC-AGAAACGAGG---------ATAA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                218839 46 +  11138919 CTGGGGCTCATTTTCAAGTCCCC-GGAAAACGAAGACTGTGTTACAA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I

a score=43760.000000
s hg38.chrX_KI270880v1_alt        154593 22 +    284869 G-CACTGGCAGCGGATGGAATGA
s panTro5.chrX                    308336 22 + 155549662 G-CACTGGCAGCGGATGGAATGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57598 22 -    177848 G-CACTGGCAGCGGACGGAATGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213091 23 +    417917 GCCACTGGCAGCGGATGGAATGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275924 22 + 180051392 -ACAGTGGCAGCGGACGGGACGA
i rheMac8.chr6                 C 0 I 4
s macFas5.chrUn_KE146020           12872 22 -     71016 -ACAGTGGCAGCGGACGGGATGA
i macFas5.chrUn_KE146020       C 0 I 4
s macNem1.NW_012017243v1          261683 22 +  25972781 -ACAGTGGCAGCGGACGGGATGA
i macNem1.NW_012017243v1       C 0 I 101
s colAng1.NW_012115411v1          275670 22 +   1230721 -ACAGGGGCAGCGGATGGAATGA
i colAng1.NW_012115411v1       C 0 I 62
s otoGar3.GL873584                218885 22 +  11138919 -ACGCTTGTGGTTGGAGGGATGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147684 86 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I

a score=12885.000000
s hg38.chrX_KI270880v1_alt        154615  9 +    284869 GGAG-AGCTG
s panTro5.chrX                    308358  9 + 155549662 GGAG-AGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57620  9 -    177848 GGAG-AGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213114 10 +    417917 GGAGAAGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143275950  9 + 180051392 GGAG-AGCTG
i rheMac8.chr6                 I 4 I 50
s macFas5.chrUn_KE146020           12898  9 -     71016 GGAG-AGCTG
i macFas5.chrUn_KE146020       I 4 I 46
s otoGar3.GL873584                218907  9 +  11138919 GGAG-GCTTG
i otoGar3.GL873584             C 0 I 43
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147684 86 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e colAng1.NW_012115411v1          275692 62 +   1230721 I
e macNem1.NW_012017243v1          261705 101 +  25972781 I

a score=4570.000000
s hg38.chrX_KI270880v1_alt        154624 4 +    284869 CATA
s panTro5.chrX                    308367 4 + 155549662 CATA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57629 4 -    177848 CATA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213124 4 +    417917 CATA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           12953 4 -     71016 CATC
i macFas5.chrUn_KE146020       I 46 C 0
s otoGar3.GL873584                218959 4 +  11138919 CATA
i otoGar3.GL873584             I 43 C 0
e manLeu1.NW_012108508v1          109899 101 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        147684 86 -    811265 I
e cerAty1.NW_012001098v1          178517 125 -   1025902 I
e colAng1.NW_012115411v1          275692 62 +   1230721 I
e rheMac8.chr6                 143275959 50 + 180051392 I
e macNem1.NW_012017243v1          261705 101 +  25972781 I

a score=172127.000000
s hg38.chrX_KI270880v1_alt        154628 43 +    284869 TTCGGTGAACTGTGTTGAAAGCACAGGGTTTTCACGGAAAATA
s panTro5.chrX                    308371 43 + 155549662 TTCGGTGAACTGTGTTGAAAGCACAGGGTTTTCATGGAAAATA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57633 43 -    177848 TTCGGTGAACTGTGTTGAAAGCACAGGGTTTTCACGGAAAATA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213128 42 +    417917 TTC-GTGAACTGTGTTGAAAGCACAGGGTTTTCACGGAAAATA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276009 43 + 180051392 TTCGGTGAACTGTGTGGAAAGGGCAGGGTGTTCACGGAAAATA
i rheMac8.chr6                 I 50 C 0
s macFas5.chrUn_KE146020           12957 43 -     71016 TTCGGTGAACTGTGTGGAAAGGGCAGGGTGTTCACGGAAAATA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          178642 43 -   1025902 TTCGGTGAACTGTGTGGAAAGCGCAGGGTGTTCACGGAAAATA
i cerAty1.NW_012001098v1       I 125 C 0
s chlSab2.chrUn_KE147541v1        147770 43 -    811265 TTCGGTGAACTGTGTGGAAAGCGCCAGGCTTTCACGGAAAATA
i chlSab2.chrUn_KE147541v1     I 86 C 0
s manLeu1.NW_012108508v1          110000 43 -    350446 TTCGGTGAACTGTGTGGAAAGCGCAGGGTGTTCACGGAAAATA
i manLeu1.NW_012108508v1       I 101 C 0
s colAng1.NW_012115411v1          275754 43 +   1230721 TTCGATGAACGGTGTGGAAAGCGCAGGGTTTTCATGGAAAATA
i colAng1.NW_012115411v1       I 62 C 0
s otoGar3.GL873584                218963 43 +  11138919 CTCAGAGAAGTCTGTTGAAAGGATAGAGTTTTAAGGGAAAATA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          261705 101 +  25972781 I

a score=588154.000000
s hg38.chrX_KI270880v1_alt        154671 152 +    284869 AATAATGTCCAATGCAGCTAAAAT-ACCGTGCGCCACCCGT-AAGCCGGCGTTTATCCAGAGCTCCGAGTGTCTGTGAGATTTTAAGGAAAAG-AAAGGAAGCTGG---AAAAAAAAATAATAATCCAAATGAATCACAGACC-AACGA-TCCCTAAAA--G
s panTro5.chrX                    308414 149 + 155549662 AATAATGTCCAATGCAGCTAAAAT-ACTGTGTACCACCCGT-AAGCCGGCGTTTATCCAGAGCTCCGAGTGTCTGTGAGATTTTAAGGAAAAG-AAAGGAAGCTGG---AACATAA---AATAATCCAGATGAATCACAGACC-AACGA-TCCCTAAAA--G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57676 149 -    177848 AATAATGTCAAATACAGCTAAAAT-ACTGTGTGCCACCCGT-AAGCCGGCGTTTATCCAGAGCTCTGAGTGTCTGTGAGATTTTAAGGAAAAG-AAAGGAAGCTGG---AAAAAAA---AATAATCCAGATGAATCACAGACC-AACGA-TCCCTAAAA--G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213170 150 +    417917 AATAATGTCAAATGCAGCTAAAATAACCGTGTGCCACCCGT-AAGCCGGCGTTTATCCAGAGCTGCGAGTGTCTGTGAGATTTTAAGGAAAAGAAAAGGAAGCTGG---AAAAAAAA--AATAATCCA----ATTCACAGACCAAACGATTCCCTAAAA--G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276052 149 + 180051392 AATAATGTCAAATGCAACTAAGGT-ACCGTCCACCGACCGC-AAGCCGGCGTCTATCCAGAGCTCTGAGGGTCTGTGAGATTTGAAGGAAAAG-AAAGGAAGCTGG---AAAAAAAA--AAAAATTCAAATGAATCAGAGACA-AACCA-TCCCTAAAA---
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           13000 152 -     71016 AATAATGTCAAATGCAACTAAGGT-ACCGTGCACTGACCGC-AAGCCGGCGTCTATCCAGAGCTCTGAGGGTCTGTGAGATTTGAAGGAAAAG-AAAGGAAGCTGGAAAAAAAAAAA--AAAAATTCAAATGAATCAGAGACA-AACCA-TCCCTAAAA---
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          261806 146 +  25972781 AATAATGTCAAATGCAACTAAGGT-ACCGTCCACCGACCGC-AAG-CGGCGTCTATCCAGAGCTCTGA-GGTCTGTGAGATTTGAAGGAAAAG--AAGGAAGCTGG---AAAAAAAA--AAAAATTCAAATGAATCAGAGACA-AACCA-TCCTAAAAG---
i macNem1.NW_012017243v1       I 101 I 47
s cerAty1.NW_012001098v1          178685 149 -   1025902 AATAATGTCAAATGCAACTAAGGT-ACCGTGCACCGACCGC-AAGCCGGCGTCTATCCAGAGCTCTGAGGGTCTGTGAGATTTTAAGGAAAAG-AAAGGAAGCTGG---AAAAAAAA--AAAAATTCAAATGAATCACAGACA-AACCA-TCCCTAAAA---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        147813 153 -    811265 AATCATGTCAAATGCAACTAAGGT-ACCGTGCACCGACCGC-AAGCCGGCGTCTATCCAGGGCTCTGAGCGTCTGTGAGATTTTAAGGAAAAG-AAAGGAGGCTGGAAAAAAAAAAA--AAAAATTGAAATGAATCACAGACA-AACCA-TCCCTAAAAG--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          110043 152 -    350446 AATAATGTCAAATGCAACTAAGGT-ACTGTGCACCGACTGC-AAGCCGGCGTCTATCCAGAGCTCTGAGGGTCTGTGAGATTTTAAAGAAAAG-AAAGGAAGCTGG-AAAAAAAAAA--AAAAATTCAAATGAATCACAGACA-AACCA-TCCCTAAAAG--
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          275797 147 +   1230721 AATAATGTCAAATGCAGCTAAGGT-ACCGTGCACCGACTTC-GAGCCGGCGTTTCTCCGGAGCTCTGAGGGTCTGTCAGATTTTAAGGGAAAA-AAAGGAAGCTGG------AAAAA--AAAAATTCAAATGAATCACAGACA-AATGA-TCCCTAAAA-G-
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                219006 142 +  11138919 AATAATGTCAAATCCGGTGAAAAT-GCCTTTCGATGCTCATAAAGTCAGTGCTTATGGAGAGTTCTGA--GTCTATAAGATTTTAAGGCAAAG--AAAGAAGCTGG-----AAACAA--AAACATCAGCGTTAATCACAGCAG-AA----CCCTGAAAG---
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I

a score=46492.000000
s hg38.chrX_KI270880v1_alt        154823 16 +    284869 GTTTGCTTT-AATAAtt--
s panTro5.chrX                    308563 14 + 155549662 GTTTGCTTT-AATAA----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57825 14 -    177848 GTTTGCTTT-AATAA----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213320 14 +    417917 GTTTGCTTT-AATAA----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276201 14 + 180051392 GCTTGCTTT-AATAA----
i rheMac8.chr6                 C 0 I 3
s macFas5.chrUn_KE146020           13152 14 -     71016 GCTTGCTTT-AATAA----
i macFas5.chrUn_KE146020       C 0 I 3
s cerAty1.NW_012001098v1          178834 14 -   1025902 GCTTGCTTT-AATAA----
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1        147966 13 -    811265 -GTTGCTTT-AATAA----
i chlSab2.chrUn_KE147541v1     C 0 I 21
s manLeu1.NW_012108508v1          110195 13 -    350446 -CTTGCTTT-AATAA----
i manLeu1.NW_012108508v1       C 0 I 36
s colAng1.NW_012115411v1          275944 13 +   1230721 -GTTGCTTT-AATAA----
i colAng1.NW_012115411v1       C 0 I 2
s otoGar3.GL873584                219148 17 +  11138919 GGTTGCTCTAAATAA--TT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          261952 47 +  25972781 I

a score=26272.000000
s hg38.chrX_KI270880v1_alt        154839 24 +    284869 tttttttttttttttttGTGGCTG
s panTro5.chrX                    308577 17 + 155549662 -------TTTTTTTTTTGTGGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57839 17 -    177848 -------TTTTTTGTGTGTGGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213334 18 +    417917 ------TTTTTTTTTTTGTGGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276218 23 + 180051392 tgtgtgta-tttttgttgttgttg
i rheMac8.chr6                 I 3 I 9
s macFas5.chrUn_KE146020           13169 23 -     71016 tgtgtgta-tttttgttgttgttg
i macFas5.chrUn_KE146020       I 3 I 9
s cerAty1.NW_012001098v1          178851 24 -   1025902 tgtgtgtattttttgttgttgttg
i cerAty1.NW_012001098v1       I 3 I 9
s chlSab2.chrUn_KE147541v1        148000 24 -    811265 tgtgtgtgtTTTTTGTCGTTGCCA
i chlSab2.chrUn_KE147541v1     I 21 C 0
s colAng1.NW_012115411v1          275959 21 +   1230721 ---GTGTTTTTTTTGTTGTCGTTG
i colAng1.NW_012115411v1       I 2 I 3
s otoGar3.GL873584                219165 12 +  11138919 ---------TTTTTGTTGCCG---
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110208 36 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          261952 47 +  25972781 I

a score=112423.000000
s hg38.chrX_KI270880v1_alt        154863 30 +    284869 TGGAAGATGACTCGGATTCAAAATAATG----AG
s panTro5.chrX                    308594 30 + 155549662 TGGAAGATGACTCCGATTCAAAATAATG----AG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57856 30 -    177848 TGGAAGATGACTCGGATTCAAAATAATG----AG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213352 30 +    417917 TGGAAGATGACTCGGATTCAAAATAATG----AG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276250 28 + 180051392 TGGAAGATAACTCGGATCCAAAATAATG------
i rheMac8.chr6                 I 9 C 0
s macFas5.chrUn_KE146020           13201 28 -     71016 TGGAAGATAACTCGGATCCAAAATAATG------
i macFas5.chrUn_KE146020       I 9 C 0
s macNem1.NW_012017243v1          261999 30 +  25972781 TGGAAGATAACTCGGATCCAAAATAATGAG----
i macNem1.NW_012017243v1       I 47 I 18
s cerAty1.NW_012001098v1          178884 28 -   1025902 TGGAAGATAACTCGGATCCAAAATAATG------
i cerAty1.NW_012001098v1       I 9 C 0
s chlSab2.chrUn_KE147541v1        148024 28 -    811265 TGGAAGATAACTCGGATCCAAAATAATG------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          110244 28 -    350446 TGGAAGATAACTCGGATCCAAAATAATG------
i manLeu1.NW_012108508v1       I 36 C 0
s colAng1.NW_012115411v1          275983 30 +   1230721 CGGAAGATGACTCGGATCCAAAATAATG--AG--
i colAng1.NW_012115411v1       I 3 C 0
s otoGar3.GL873584                219177 27 +  11138919 AAGAAGATGAGCAGGAGTTGAGATGAG-------
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I

a score=52004.000000
s hg38.chrX_KI270880v1_alt        154893 91 +    284869 GATGTTTATGTCTGCAGTCTGTTCCTCTCTTGAAGATTCAATTCTAAATAATGCAGGTCTCCTAAATGCTAGCAAATAGTGTCATACACTC
s panTro5.chrX                    308624 91 + 155549662 GATGTTTATGTCTGCAGTCTGTTCCTCTCTTGAAGATTCAATTCTAAATAATGCAGGTCTCCTAAATGCTAGCAAATAGCGTCATACACTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57886 90 -    177848 GATGTTTATGTCTGCAGTCTGTTCCTCTCTTGAAGATTC-ATTCTAAATAATGCAGGTCTCCTAAATGCTAGCAAATAGTGTCATACACTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213382 87 +    417917 GATG-TTATGTCTGCAGTCTGTTCCTCTCTTGAAGATTC-ATTCTGAATAATGCAGGTCTCCTAAATGCTAGCAAATA--TGCATACACTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276278 21 + 180051392 ----------------------------------------------------------------------AGCAAACACTGTCACACAGTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           13229 21 -     71016 ----------------------------------------------------------------------AGCAAACACTGTCACACAGTC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          178912 21 -   1025902 ----------------------------------------------------------------------AGCAAACACTGTCACACAGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        148052 21 -    811265 ----------------------------------------------------------------------AGCAAACACTATCACACAGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          110272 21 -    350446 ----------------------------------------------------------------------AGCAAACACTGTCACACAGTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          276013 88 +   1230721 CATATTTATGTCTGGAATCTGTTCCTCTCTTTAAGGTTC-TTTCTGAATAATGCA-GCCCCCTAAATGC-AGCAAACACTGTCACACAGTC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                219204 88 +  11138919 CACATTTGTGTCTGGAACTCAGCCTTCTATTTAAGGCTC-CTTCCAAATAATGTG-GTCTCCTAAATGC-GGCAAATCACGCCAGAAACTC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          262029 18 +  25972781 I

a score=249105.000000
s hg38.chrX_KI270880v1_alt        154984 47 +    284869 CTTTTCACAAAATAGCTTTGACTTTGGGGAAGGCAACTATCATTAAC
s panTro5.chrX                    308715 47 + 155549662 CTTTTCACAAAATAGCTTTGACTTTGGGGAAGGCAACTATCATTAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     57976 47 -    177848 CCTTTCACAAAATAGCTTTGACTTTGGGGAAGGCAACTATCATTAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213469 47 +    417917 CTTTTCACAAAATAGCTTTGACTTTGGAGAAGGCAACTATCATTAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276299 47 + 180051392 CTTTTCGCAAAATCGCTTTGGCTTTGGGGAAGGCAACTGTCATTAAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           13250 47 -     71016 CTTTTCGCAAAATCGCTTTGGCTTTGGGGAAGGCAACTGTCATTAAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          262047 47 +  25972781 CTTTTCGCAAAATCGCTTTGGCTTTGGGGAAGGCAACTGTCATTAAC
i macNem1.NW_012017243v1       I 18 I 117
s cerAty1.NW_012001098v1          178933 47 -   1025902 CTTTTCGCAAAATCGCTTTGACTTTGGGGAAGGCAACTGTCATTAAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        148073 47 -    811265 CTTTTCGCAAAATCGCTTTGGCTTTGGGGAAGGCAACTGTCATTAAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          110293 47 -    350446 CTTTTCGCAAAATCGCTTTGGCTTTGGGGAAGGCAACTGTCATTAAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          276101 47 +   1230721 CTTTTTGCAAAGTCGCTTTGACTTCGAGGAAGGCGACTGTCATTAAC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                219292 46 +  11138919 CTTTCCAGGAAATAGCTTTGACTTTGGGG-ATGCAACTGTCATTAAT
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I

a score=6445.000000
s hg38.chrX_KI270880v1_alt        155031  6 +    284869 --TGGGCA-------
s panTro5.chrX                    308762  6 + 155549662 --TGGGCA-------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58023  6 -    177848 --TGGGCA-------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213516  6 +    417917 --TGGGCA-------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276346  5 + 180051392 ---GGGCA-------
i rheMac8.chr6                 C 0 I 20
s macFas5.chrUn_KE146020           13297  5 -     71016 ---GGGCA-------
i macFas5.chrUn_KE146020       C 0 I 1
s cerAty1.NW_012001098v1          178980  5 -   1025902 ---GGGCA-------
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1        148120  5 -    811265 ---GGGCA-------
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1          110340  5 -    350446 ---GGGCA-------
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          276148  5 +   1230721 ---GGGCA-------
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584                219338 15 +  11138919 TTGTAGCAGCCCACG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          262094 117 +  25972781 I

a score=42176.000000
s hg38.chrX_KI270880v1_alt        155037 17 +    284869 CCGGC-ACCTTTAAGCAA
s panTro5.chrX                    308768 17 + 155549662 CCGGC-ACCTTTAAGCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58029 17 -    177848 CCGGC-ACCTTTAAGCAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213522 18 +    417917 CCGGCAACCTTTAAGCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           13303 17 -     71016 CCCGC-ACGTGAAAGCGA
i macFas5.chrUn_KE146020       I 1 I 2
s cerAty1.NW_012001098v1          178986 17 -   1025902 CCCGC-ACGTTAAAGCGA
i cerAty1.NW_012001098v1       I 1 I 2
s chlSab2.chrUn_KE147541v1        148126 17 -    811265 CCCGC-ACGTTAAAGCGA
i chlSab2.chrUn_KE147541v1     I 1 I 2
s manLeu1.NW_012108508v1          110346 17 -    350446 CCCGC-ACGTTAAAGCGA
i manLeu1.NW_012108508v1       I 1 I 2
s colAng1.NW_012115411v1          276154 17 +   1230721 GCCGC-ACGTTAAAGCGA
i colAng1.NW_012115411v1       I 1 I 2
s otoGar3.GL873584                219353 17 +  11138919 CGGGC-ACCTTTAAGAGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e rheMac8.chr6                 143276351 20 + 180051392 I
e macNem1.NW_012017243v1          262094 117 +  25972781 I

a score=333305.000000
s hg38.chrX_KI270880v1_alt        155054  92 +    284869 AGGTTTCCTGGAATAACAGTCAGCTAAGGAAATATAAT--GAG--AGCTA--TTTCTTGCCCTTCCTGCTCGAAACCGTTGGCTGGAACT----CAGCCTGC
s panTro5.chrX                    308785  96 + 155549662 AGGTTCCCTGGAATAACAGTCTGCTAAGGAAATATAAT--GAG--AGCTA--TTTCTTGCCCTTACTGCTCGAAACCGTTGGCTGGAACTCAACCAGCCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58046  96 -    177848 AGGTTTCCTGGAATAACAGTCTGCTAAGGAAATATAAT--GAG--AGCTA--TTTCTTGCCCTTACTGCTCGAAACCGTTGGCTGGAACTCAACCAGCCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213540  92 +    417917 GGGTTTCCTGAA--TACAGTCTGCTAA-GAAATATAAT--GAG--AGCTA--TTTCTTGCCCTTACTGCTCGAAACCGTTGGCTGGAACTCAA-CAGCCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276371  92 + 180051392 AGATTTCCTGGGAGAACGGTCTGCTAAGGAAATGTAAT--GAG--ACCTA--TTTCTTGCCCTTATTGCTGCAAACCGTTGCCTGGTACTTAACCAGC----
i rheMac8.chr6                 I 20 I 6
s macFas5.chrUn_KE146020           13322  92 -     71016 AGATTTCCTGGGAGAACGGTCTGCTAAGGAAATGTAAT--GAG--ACCTA--TTTCTTGCCCTTATTGCTGCAAACCGTTGCCTGGTACTTAACCAGC----
i macFas5.chrUn_KE146020       I 2 I 6
s cerAty1.NW_012001098v1          179005  92 -   1025902 AGATTTCCTGGGAGAACGGTCTGCTAAGGAAATGTAAT--GAG--ACCTA--TTTCTTGCCCTTATTGCTGCAAACCGTTGCCTGGTACTTAACCAGC----
i cerAty1.NW_012001098v1       I 2 I 6
s chlSab2.chrUn_KE147541v1        148145  92 -    811265 AGATTTCCTGGGAGAACGGTCTGCTAAGGAAATGTAAT--GAG--AGCTA--TTTCTTGCCCTTATTGTTGCAAACCGTTGCCTGGTACTCGACCAGC----
i chlSab2.chrUn_KE147541v1     I 2 I 6
s manLeu1.NW_012108508v1          110365  92 -    350446 AGATTTCCTGGGAGAACGGTCTGCTAAGGAAATGTAAT--GAG--ACCTA--TTTCTTGCCCTTATTGCTGCAAACTGTTGCCTGGTACTTAACCAGC----
i manLeu1.NW_012108508v1       I 2 I 6
s colAng1.NW_012115411v1          276173  94 +   1230721 AGATTTCCTGGGATAACGGTCTGCGAAGGACATATAATGAGAG--ACCTA--GTTTTTGCCCTTAGTGCTGGAAACTGTTGCCTGGTACTCAGCCAGC----
i colAng1.NW_012115411v1       I 2 I 4
s otoGar3.GL873584                219370 100 +  11138919 GGGTTTTCTGGGATAACAGTCTGCTAAAGAAATATAAT--GAGAAAGCTATTTTTCTTGCCCTTATTTTTTGAAACCATTGCCTGAAACTAGACCAGCCTGC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I
e macNem1.NW_012017243v1          262094 117 +  25972781 I

a score=339390.000000
s hg38.chrX_KI270880v1_alt        155146 66 +    284869 CCCTCAGCTGAAGCACGTCTGGTTTAAATTCATACGGCATAGATTTACAA-TTTTTAAACGACTGGA
s panTro5.chrX                    308881 66 + 155549662 CCCTCAGCTGAAGCACGTCTGGTTTAAATTCATACGGCATAGATTTACAA-TTTTTAAATGACTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58142 66 -    177848 CCCTCAGCTGAAGCACGTCTGGTTTAAATTCATACGGCATAGATTTACAA-TTTTTAAACGACTGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213632 66 +    417917 CCCTCAGCTGAAGCACGTCTGGTTT-AATTCATACGGCATAGATTTACAATTTTTTAAATGACTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276469 66 + 180051392 CCCTCGGCTGAAGCACGCCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAACGACCGGa
i rheMac8.chr6                 I 6 I 14
s macFas5.chrUn_KE146020           13420 66 -     71016 CCCTCGGCTGAAGCACGCCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAACGACCGGa
i macFas5.chrUn_KE146020       I 6 I 14
s macNem1.NW_012017243v1          262211 64 +  25972781 CCCTCGGCTGAAGCACGCCTGGTTG-AATTCATACGGCCTAGATTTACAA--TTTTAAACGACCGGa
i macNem1.NW_012017243v1       I 117 I 14
s cerAty1.NW_012001098v1          179103 66 -   1025902 CCCTCGGCTGAAGCACGCCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAATGACCGGa
i cerAty1.NW_012001098v1       I 6 I 14
s chlSab2.chrUn_KE147541v1        148243 66 -    811265 CCCTCGGCTGAAGCACGCCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAACGACCGGa
i chlSab2.chrUn_KE147541v1     I 6 I 16
s manLeu1.NW_012108508v1          110463 66 -    350446 CCCTCGGCTGAAGCACGCCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAACGACCGGA
i manLeu1.NW_012108508v1       I 6 I 4816
s colAng1.NW_012115411v1          276271 66 +   1230721 CCCTCAGCTGAAGCACGTCTGGTTGAAATTCATACGGCCTAGATTTACAA-TTTTTAAATGACCGGA
i colAng1.NW_012115411v1       I 4 C 0
s otoGar3.GL873584                219470 65 +  11138919 CCCTTGGCTGTGG-ACGTCTGGTTTATATTCATATTGCATCAATTTACAA-TTTTTAAATGACTGGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                203378 5302 +    465904 I

a score=10222.000000
s hg38.chrX_KI270880v1_alt        155212 7 +    284869 TATGTAT
s panTro5.chrX                    308947 6 + 155549662 TATGTA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58208 6 -    177848 TATGTA-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213698 6 +    417917 TATGTA-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276549 6 + 180051392 tatata-
i rheMac8.chr6                 I 14 I 4
s macFas5.chrUn_KE146020           13500 6 -     71016 tatata-
i macFas5.chrUn_KE146020       I 14 I 4
s macNem1.NW_012017243v1          262289 6 +  25972781 tatata-
i macNem1.NW_012017243v1       I 14 I 19
s cerAty1.NW_012001098v1          179183 3 -   1025902 tat----
i cerAty1.NW_012001098v1       I 14 I 4
s chlSab2.chrUn_KE147541v1        148325 6 -    811265 tatgta-
i chlSab2.chrUn_KE147541v1     I 16 C 0
s colAng1.NW_012115411v1          276337 6 +   1230721 TATATA-
i colAng1.NW_012115411v1       C 0 I 2720
s otoGar3.GL873584                219535 4 +  11138919 TATA---
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I

a score=205386.000000
s hg38.chrX_KI270880v1_alt        155219 66 +    284869 TTTTTTTTTTCTACGCTGTTTGCAGACCTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAGGAG
s panTro5.chrX                    308953 65 + 155549662 -TTTTTTTTTCTACGCTGTTTGCAGACCTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58214 64 -    177848 --TTTTTTTTCTACGCTGTTTGCAGACCTGGTGGACACCTGTTGTTTCTGGTTAGCAAAGGAGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213704 64 +    417917 TTTTTTTTTCCTACGCTGTTTGCAGACCTGGTGGACA-CTGTTGTTTCTGGTTAG-AAAGGACGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276559 66 + 180051392 TTTTTTTTTTCTATGCTCTCTGCAGACTTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAAGAG
i rheMac8.chr6                 I 4 C 0
s macFas5.chrUn_KE146020           13510 66 -     71016 TTTTTTTTTTCTATGCTGTCTGCAGACTTCGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAAGAG
i macFas5.chrUn_KE146020       I 4 C 0
s macNem1.NW_012017243v1          262314 66 +  25972781 TTTTTTTTTTCTATGCTGTCTGCAGACTTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAGGAG
i macNem1.NW_012017243v1       I 19 I 19
s cerAty1.NW_012001098v1          179190 66 -   1025902 CTTTTTTTTTCTATGCTCTCTGCAGTCTTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAAGAG
i cerAty1.NW_012001098v1       I 4 C 0
s chlSab2.chrUn_KE147541v1        148331 63 -    811265 ---tTTTTTTCTATGCTCTCTGCAGACTTGGTGGACACCTGTTGTTTCTGGTTAGGAAAGGAAGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584                219539 52 +  11138919 -----TTTTTCTGAGCTATTCACA---------GACACCTGTTGTTTTCGGTTAGTAAATCAACAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=23256.000000
s hg38.chrX_KI270880v1_alt        155285 7 +    284869 ATAATTG
s panTro5.chrX                    309018 7 + 155549662 ATAATTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58278 7 -    177848 ATAATTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213768 7 +    417917 ATAATTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276625 7 + 180051392 ATAATTG
i rheMac8.chr6                 C 0 I 6
s macFas5.chrUn_KE146020           13576 7 -     71016 ATAATTG
i macFas5.chrUn_KE146020       C 0 I 3
s cerAty1.NW_012001098v1          179256 7 -   1025902 ATAATTG
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1        148394 7 -    811265 ATAATTG
i chlSab2.chrUn_KE147541v1     C 0 I 3
s otoGar3.GL873584                219591 7 +  11138919 ATAATTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262380 19 +  25972781 I

a score=-4128.000000
s hg38.chrX_KI270880v1_alt        155292 8 +    284869 GATACCAG
s panTro5.chrX                    309025 6 + 155549662 GATACC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58285 6 -    177848 GATACC--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213775 6 +    417917 GATACC--
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           13586 1 -     71016 G-------
i macFas5.chrUn_KE146020       I 3 I 2
s cerAty1.NW_012001098v1          179266 1 -   1025902 G-------
i cerAty1.NW_012001098v1       I 3 I 4
s chlSab2.chrUn_KE147541v1        148404 1 -    811265 G-------
i chlSab2.chrUn_KE147541v1     I 3 I 3
s otoGar3.GL873584                219598 6 +  11138919 GATGGC--
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e rheMac8.chr6                 143276632 6 + 180051392 I
e macNem1.NW_012017243v1          262380 19 +  25972781 I

a score=5748.000000
s hg38.chrX_KI270880v1_alt        155300 7 +    284869 AGAGAGC--
s panTro5.chrX                    309031 7 + 155549662 AGAGAGC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58291 7 -    177848 AGAGAGC--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213781 7 +    417917 AGAGAGC--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276638 7 + 180051392 ACAGAGG--
i rheMac8.chr6                 I 6 C 0
s macFas5.chrUn_KE146020           13589 7 -     71016 ACAGAGC--
i macFas5.chrUn_KE146020       I 2 C 0
s cerAty1.NW_012001098v1          179271 5 -   1025902 --AGAGG--
i cerAty1.NW_012001098v1       I 4 C 0
s otoGar3.GL873584                219604 7 +  11138919 --AGATGTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        148405 3 -    811265 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262380 19 +  25972781 I

a score=170410.000000
s hg38.chrX_KI270880v1_alt        155307 50 +    284869 CTGACTTCTTGAGCCACCATTTAACCGGCTGATTTCAGCAATAAATTGGA
s panTro5.chrX                    309038 50 + 155549662 CTGACTTCTTGAGCCATCATTTAACCGGCTGATTTCAGCAATAAATTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58298 50 -    177848 CTGACTTCTTGAGCCATCATTTAACCGGCTGATTTCAGCAATAAATTGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213788 49 +    417917 CTGGCTTCTTGAGCCACCATTTAACCGGCTGATTTCA-CAATAAATTTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276645 50 + 180051392 CTGACTTCTTGAGTCACCATTTAACCAGCTGATTTCAGCCATAAATTGGA
i rheMac8.chr6                 C 0 I 2
s macFas5.chrUn_KE146020           13596 50 -     71016 CTGACTTCTTGAGTCACCATTTAACCAGCTGATTTCAGCCATAAATTGGA
i macFas5.chrUn_KE146020       C 0 I 1
s macNem1.NW_012017243v1          262399 50 +  25972781 CTGACTTCTTGAGTCACCATTTAACCAGCTGATTTCAGCCATAAATTGGA
i macNem1.NW_012017243v1       I 19 I 3544
s cerAty1.NW_012001098v1          179276 50 -   1025902 CTGACTTCTTGAGTCACCATTTAACGGGCTGATTTCAGCCATAAATCGGA
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1        148408 48 -    811265 --GACTTCTTGAGTCACCGTTTAACCGGCTGATTTCAGCCATAAATTGGA
i chlSab2.chrUn_KE147541v1     I 3 I 1
s otoGar3.GL873584                219611 50 +  11138919 TTGACTTTTTGAGCCATAATTTAACAAACTGATTTGAGCAGTGATTTGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=1000.000000
s hg38.chrX_KI270880v1_alt        155357 1 +    284869 G
s panTro5.chrX                    309088 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58348 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213837 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                219661 1 +  11138919 G
i otoGar3.GL873584             C 0 I 422
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1        148456 1 -    811265 I
e cerAty1.NW_012001098v1          179326 1 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e rheMac8.chr6                 143276695 2 + 180051392 I
e macNem1.NW_012017243v1          262449 3544 +  25972781 I
e macFas5.chrUn_KE146020           13646 1 -     71016 I

a score=9702.000000
s hg38.chrX_KI270880v1_alt        155358 4 +    284869 GGGG
s panTro5.chrX                    309089 4 + 155549662 GGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58349 4 -    177848 GGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213838 4 +    417917 GGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276697 4 + 180051392 GGGG
i rheMac8.chr6                 I 2 C 0
s macFas5.chrUn_KE146020           13647 4 -     71016 GGGG
i macFas5.chrUn_KE146020       I 1 C 0
s cerAty1.NW_012001098v1          179327 4 -   1025902 GGGG
i cerAty1.NW_012001098v1       I 1 I 28
s chlSab2.chrUn_KE147541v1        148457 4 -    811265 GTGG
i chlSab2.chrUn_KE147541v1     I 1 I 36
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                219662 422 +  11138919 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262449 3544 +  25972781 I

a score=9689.000000
s hg38.chrX_KI270880v1_alt        155362 23 +    284869 GCGGGGATGGGGAAAAAATAACA--------
s panTro5.chrX                    309093 23 + 155549662 GCGGGGGTGGGGAAAAAATAACA--------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58353 23 -    177848 GCGGGGATGGGGAAAAGATAACA--------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213842 21 +    417917 GC-GGGATGGGGAAAA-ATAACA--------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276701 23 + 180051392 --------GAGaaaaaaaaaacaaactagca
i rheMac8.chr6                 C 0 I 7
s macFas5.chrUn_KE146020           13651 23 -     71016 --------GAAGAAAAAAAAACAAACTAGCA
i macFas5.chrUn_KE146020       C 0 I 7
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                219662 422 +  11138919 I
e chlSab2.chrUn_KE147541v1        148461 36 -    811265 I
e cerAty1.NW_012001098v1          179331 28 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262449 3544 +  25972781 I

a score=81600.000000
s hg38.chrX_KI270880v1_alt        155385 39 +    284869 CCCAAGAAACATTCAGACAGATTTGCAACCA-CAAAGTCT
s panTro5.chrX                    309116 39 + 155549662 CCCAAGAAACATTCAGACAGATTTGCAACCA-CAAAGTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58376 39 -    177848 CCCAAGAAACATTCAGACAGATTTGCAACCA-CGAAGTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213863 40 +    417917 CCCAAGAAACATTCAGACAGATTTGCAACCAGAAAAGTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276731 39 + 180051392 ccaaacacacattcaaacaGATTTGCAACCC-TAAAGTCT
i rheMac8.chr6                 I 7 C 0
s macFas5.chrUn_KE146020           13681 39 -     71016 CCAAACACACATTCAAACAGATTTGCAACCC-TAAAGTCT
i macFas5.chrUn_KE146020       I 7 C 0
s cerAty1.NW_012001098v1          179359 39 -   1025902 CCAAAGACACATTCAAACAGATTTGCAACCC-TAAAGTCT
i cerAty1.NW_012001098v1       I 28 C 0
s chlSab2.chrUn_KE147541v1        148497 39 -    811265 ccaaaGACACATTCAAACAGATTTGCAACCC-TAAAGTCT
i chlSab2.chrUn_KE147541v1     I 36 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                219662 422 +  11138919 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262449 3544 +  25972781 I

a score=67392.000000
s hg38.chrX_KI270880v1_alt        155424 37 +    284869 GTCTCC-Tttattattttaattttattattattatta-c
s panTro5.chrX                    309155 37 + 155549662 GTCTCC-Tttattattttaattttattattattatta-t
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58415 38 -    177848 GTCTCC-Tttattattttaattttattattattattctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213903 39 +    417917 GTCTCCTTttattattttaattttattattattattctt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276770 36 + 180051392 GTCTCC-Tttattattttaattttattatgattattt--
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           13720 36 -     71016 GTCTCC-TTTATGATTTTAATTTTATTATGATTATTT--
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          179398 35 -   1025902 GTCTTC-Tttattattttaattttattatgattatt---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        148536 36 -    811265 GTGTCC-Tttattattttgattttattatgattattt--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584                220084 29 +  11138919 GTCTCC-TTTttaatt---aattaatta--attaa----
i otoGar3.GL873584             I 422 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I
e macNem1.NW_012017243v1          262449 3544 +  25972781 I

a score=262158.000000
s hg38.chrX_KI270880v1_alt        155461 87 +    284869 ttttgctttGTT-----TAACATAAAAACGATCTAGGCGAGTCCTTCTGGGCTGATGTGTATGTGCTTTTTCCT-GCCTGGCTATCCTGTAGC
s panTro5.chrX                    309192 87 + 155549662 ttttGCTTTGTT-----TAACATAAAAATGATCTAGGCAAGTCCTTCTGGGCTGATGTGTATGTGCTTTTTACT-GCCTGGCTATCCTGTAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58453 92 -    177848 tttTGCTTTGTTTAACATAACATAAAAATGATCTAGGCGAGTCCTTCTGGGCTGATGTGTATGTGCTTTTTCCT-GCCTGGCTATCCTGTGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          213942 87 +    417917 tttTGCTTTGTT-----TAACATAAAAATGATCTAGGCGAGTCCTTCTGGGCTGATGTGTATGTGCTTTTTCCT-GCCTGGCTATCCTGTAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276806 87 + 180051392 ttTCGCTTTCTT-----TAACATACAAACGAGCTAGGCAAATCCTTCCGGGCTGACATACATGTGCTTTTCCCT-GCCTGGCTATTCTGTAGC
i rheMac8.chr6                 C 0 I 1
s macFas5.chrUn_KE146020           13756 87 -     71016 TTTCGCTTTCTT-----TAACATACAAACGAGCTAGGCAAATCCTTCCGGGCTGACATACATGTGCTTTTCCCT-GCCTGGCTATTCTGTAGC
i macFas5.chrUn_KE146020       C 0 I 1
s macNem1.NW_012017243v1          265993 87 +  25972781 TTTCGCTTTCTT-----TAACATACAAACGAGCTAGGCAAATCCTTCCGGGCTGACATACATGTGCTTTTCCCT-GCCTGGCCATTCTGTAGC
i macNem1.NW_012017243v1       I 3544 I 1
s cerAty1.NW_012001098v1          179433 88 -   1025902 tttGACTTTGTT-----TAACATACAAACGAGCTAGGCAAATCCTTCCGTGGTGCACTGTATGTGCTTTTTCCTGGCCTGGCTATTCTGTAGC
i cerAty1.NW_012001098v1       C 0 I 2204
s chlSab2.chrUn_KE147541v1        148572 86 -    811265 ttTCGCTTTGTT-----TAACATACAAACGAGCTAGGCAAATCCTTCCCGGCTGAC-TGTATGTGCTTTTTCCT-GCCTGGCTCTTCTGTAGC
i chlSab2.chrUn_KE147541v1     C 0 I 1
s otoGar3.GL873584                220113 87 +  11138919 ttTTACTTTGTC-----AAATGTGAAAACAATTGGAATGAGTCCCTTTTGGCTGAAATGCCTGTGCTTTTTCCT-GCCTCTGTGTTCTGTAGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=42534.000000
s hg38.chrX_KI270880v1_alt        155548 20 +    284869 TTTATCTAAGGCAAATCGGA
s panTro5.chrX                    309279 20 + 155549662 TTTATCTAAGGCAGATCGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58545 20 -    177848 TTTATCTAAGGCAAATCGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          214029 20 +    417917 TTTATCTAAGGCAAATCGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276894 20 + 180051392 ATTATGTGAGGTGAATCggt
i rheMac8.chr6                 I 1 C 0
s macFas5.chrUn_KE146020           13844 20 -     71016 ATTATGTGAGGTGAAtcggt
i macFas5.chrUn_KE146020       I 1 C 0
s macNem1.NW_012017243v1          266081 20 +  25972781 ATTATGTGAGGTGAAtcggt
i macNem1.NW_012017243v1       I 1 C 0
s chlSab2.chrUn_KE147541v1        148659 20 -    811265 ATTATGTGAGGTGAAtcggt
i chlSab2.chrUn_KE147541v1     I 1 C 0
s otoGar3.GL873584                220200 20 +  11138919 TTTATCTGAAGTGAATTTGA
i otoGar3.GL873584             C 0 I 7377
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e cerAty1.NW_012001098v1          179521 2204 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=440319.000000
s hg38.chrX_KI270880v1_alt        155568 207 +    284869 --GTACGTGTAAAtaaattagttcaaccattgtggaagacagcgtggcgattcctcaaggatgt-agaactagaaataccgtttgacccagccatcccgttactgggtatatacccaaaggattataaatcactctaccataaagacacatgcacacgt-atgtttattgaggcactgttcacaacagcaaagacttgg-aaccaacccaaa
s panTro5.chrX                    309299 205 + 155549662 --GTAAGTGTAAAtaaattaattcaaccattgtggaagacagtgtggcgattcctcaaggatct-agaactagaaataccgtttgacccagcaatcccgttactgggtatatacccaaaggattataaattattctaccataaagacacatgcacacgt-atgtttattgaggcactattcacaacagcaaagactt---aaccaacccaag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58565 207 -    177848 --GAAAGTGTAAAtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaggatct-agaactagaaataccgtttgacccagccatcccgttactgggtatatacccaaaggattataaatcactctaccataaagacacatgcacacgt-atgtttattgctgcactgttcacagtggcaaagacttgg-aaccaacccaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          214049 211 +    417917 AGGTAAGTGTAAAtaaattagttcaaccactgtggaagacagtgtggtgatt-ctcaaggatctaagaactagaaataccgttttgaccagcaatcccattactgggtatatacccaaaggattataagtcattctaccataaagacacatgcacatgtaatgtttactgcagcactgttcacaatagcaaagacttggaaaccaacccaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143276914 203 + 180051392 --gtaagtgtc----aattagttcaaccgtcgtggaagacagtgtggcgattcctcaaggatct-agaactagaaataccatttgacccagccatctgatgactgggtatatacccaaaggattatacatcatcctactataaagacacacgcacatgt-atgtttactgcggcattattcaccatagcaaagacttgg-aaccaacccaaa
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           13864 202 -     71016 --gtaagtgtc-----attagttcaaccgtcgtggaagacagtgtggcgattcctcaaggatct-agaactagaaataccatttgacccagccatctcatgactgggtatatacccaaaggattatacatcatcctactataaagacacacgcacatgt-atgtttactgcggcattattcaccatagcaaagacttgg-aaccaacccaaa
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          266101 203 +  25972781 --gtaagtgtc----aattagttcaaccgtcgtggaagacagtgtggcgattcctcaaggatct-agaactagaaataccatttgacccggccatctcatgactggctatatacccaaaggattatacatcatcctactataaagacacatgcacatgt-atgtttactgcggcattattcaccatagcaaagacttgg-aaccaacccaaa
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        148679 203 -    811265 --gtaagtgtc----aattagttcaaccgtcgtggaagacagtgtggcgattcctcaaggatct-agaactagaaatgccatttgacccagccatctcatgactgggtatatactcaaaggattataaatcattctactataaagacacacacacatgt-atatttactgaggcattattcaccatagcaaagacttga-aaccaacccaaa
i chlSab2.chrUn_KE147541v1     C 0 I 3738
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                220220 7377 +  11138919 I
e cerAty1.NW_012001098v1          179521 2204 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=414251.000000
s hg38.chrX_KI270880v1_alt        155775 245 +    284869 tgcccatcaatgatagactggatacagagaatgtggcacacagacaccatggaatactatgcagccacgaaaaaggatgggttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactcgcacaggaacagaaaaccacacaccgcatgttctcactcctaagtgggagctgaacgatgag-aacacagggacgcagggaggggaacat-cacac-accggggcctgtc
s panTro5.chrX                    309504 245 + 155549662 tgcccatcaacgatagactggatacagaaaatgtggcacatacacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacagggatgaagctggaaaccatcatcctcagcaaactatcacaggaacagaaaaccaaagaccgcatgttctcactcctaagtgggagttgaacaatgag-aacacagggacagagggaggggaacat-cacac-accggggaccatc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     58772 245 -    177848 tgcccatcaatgatagactggatacagagaatgtggcacatagacaccatggaatactatacagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcagtcctaagtgggagctgaacgatgag-aacacagggacgcagggaggggaacat-cacac-actggggcctgtc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          214260 247 +    417917 tgtccatcaacgatagactggatacagaaaatgtggcacatagacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagagacatggacaaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcactcat-agtgggagttgaacaatgagaaacacagggacgcagggaggggaacatccacacaaccggggcctgtc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143277117 243 + 180051392 tgcccatcagtgacagactggatgaagaaaatgtggcac--agacaccatggaatactatgcagccatgaaaaaggatgagttcacgtcctttgcagggacatggatgaagctggaaaccatccttctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcactcatcagtgggaggtgaacaatgag-aacacatggacacagggaggggaacat-cacac-accagggcctgtc
i rheMac8.chr6                 C 0 N 0
s macFas5.chrUn_KE146020           14066 243 -     71016 tgcccgtcagtgacagactggataaagaaaatgtggcac--agacaccatggaatactatgcagccatgaaaaaggatgagttcacgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcactcatcagtgggaggtgaacaatgag-aacacgtggacacagggaggggaacgt-cacac-accggggcctgtc
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          266304 243 +  25972781 tgcccgtcagtgatagactgaataaagaaaatgtggcac--agacaccatggaatactacgcagccatgaaaaaggacgagttcacgtcctttgcagggacatgggtgaaactggaaaccatccttctcagcaaactcacacagacacagaaaaccaaacaccgcatgttctcactcatcagtgggagttgaacaatgag-aacacacggacacagggaggggaacgt-cacac-accggggcctgtc
i macNem1.NW_012017243v1       C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                220220 7377 +  11138919 I
e chlSab2.chrUn_KE147541v1        148882 3738 -    811265 I
e cerAty1.NW_012001098v1          179521 2204 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=97489.000000
s hg38.chrX_KI270880v1_alt        156020 77 +    284869 agtgggttgcgggccaaggagtgggattgcattaggatgctatcctaatgctaacaaatatctaatccatccagggc
s panTro5.chrX                    309749 76 + 155549662 ag-gggttgggggacaaggggagtgagagcattaggatgctatcctaatgctaacaaatatcgaatccatccggcgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     59017 77 -    177848 agcaggttatgggccaaggggtgggattgcattaggatgctatcctaatgctaacaaatatctaatccatccggggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          214507 77 +    417917 agtgggttcgcgggccaagggtgtgatttcattaggatgctatcctaatgctaacaaatatctaatgccatcggggc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143175514 76 + 180051392 -ggggggtggaaggcagggggagggagagcattaggatgctatcgtaatgctaaccaatacctgatccatgtggggt
i rheMac8.chr6                 N 0 C 0
s macFas5.chrUn_KE146020           14309 76 -     71016 -ggggggtggagggcagggggagggagagcattaggatgctatcgtaatgctaaccaatacctgatccatgtggggt
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          266547 76 +  25972781 -ggggggtggagggcagggggagggagagcattaggatgctatcgtaatgctaaccaatatctgatccatgtggggt
i macNem1.NW_012017243v1       C 0 C 0
e manLeu1.NW_012108508v1          110529 4816 -    350446 I
e saiBol1.JH378345                203378 5302 +    465904 I
e otoGar3.GL873584                220220 7377 +  11138919 I
e chlSab2.chrUn_KE147541v1        148882 3738 -    811265 I
e cerAty1.NW_012001098v1          179521 2204 -   1025902 I
e colAng1.NW_012115411v1          276343 2720 +   1230721 I

a score=18546.000000
s hg38.chrX_KI270880v1_alt          156097 8 +    284869 ttaacacc
s panTro5.chrX                      309825 8 + 155549662 ttaacacc
i panTro5.chrX                   C 0 I 1429
s panPan2.chrUn_NW_014024190v1       59094 8 -    177848 ttaacacc
i panPan2.chrUn_NW_014024190v1   C 0 I 2340
s gorGor5.CYUI01015925v1            214584 8 +    417917 ttaacacc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3512 8 +     35312 TCAATTCT
i nomLeu3.chrX_GL398042_1_random N 0 C 0
s rheMac8.chr6                   143175590 8 + 180051392 ttaacacc
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             14385 8 -     71016 ttaacacc
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            266623 8 +  25972781 ttaacacc
i macNem1.NW_012017243v1         C 0 C 0
s otoGar3.GL873584                  227597 8 +  11138919 TTGATTCT
i otoGar3.GL873584               I 7377 C 0
e manLeu1.NW_012108508v1            110529 4816 -    350446 I
e saiBol1.JH378345                  203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1          148882 3738 -    811265 I
e cerAty1.NW_012001098v1            179521 2204 -   1025902 I
e colAng1.NW_012115411v1            276343 2720 +   1230721 I

a score=12524.000000
s hg38.chrX_KI270880v1_alt          156105 5 +    284869 tagat
s panTro5.chrX                      311262 5 + 155549662 TAGAT
i panTro5.chrX                   I 1429 C 0
s panPan2.chrUn_NW_014024190v1       61442 5 -    177848 TAGAT
i panPan2.chrUn_NW_014024190v1   I 2340 C 0
s gorGor5.CYUI01015925v1            214592 5 +    417917 tagat
i gorGor5.CYUI01015925v1         C 0 I 2575
s nomLeu3.chrX_GL398042_1_random      3520 5 +     35312 TATAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143175598 5 + 180051392 tagat
i rheMac8.chr6                   C 0 I 1322
s macFas5.chrUn_KE146020             14393 5 -     71016 tagat
i macFas5.chrUn_KE146020         C 0 I 1319
s macNem1.NW_012017243v1            266631 5 +  25972781 tagat
i macNem1.NW_012017243v1         C 0 I 20574
s otoGar3.GL873584                  227605 5 +  11138919 TGCAT
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            110529 4816 -    350446 I
e saiBol1.JH378345                  203378 5302 +    465904 I
e chlSab2.chrUn_KE147541v1          148882 3738 -    811265 I
e cerAty1.NW_012001098v1            179521 2204 -   1025902 I
e colAng1.NW_012115411v1            276343 2720 +   1230721 I

a score=47869.000000
s hg38.chrX_KI270880v1_alt          156110 10 +    284869 aagggACCTC
s panTro5.chrX                      311267 10 + 155549662 AAGGGACCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61447 10 -    177848 AAGGGACCTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3525 10 +     35312 AAGGGAGCTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143176925 10 + 180051392 AAGGGAGTTC
i rheMac8.chr6                   I 1322 C 0
s macFas5.chrUn_KE146020             15717 10 -     71016 AAGGGAGTTC
i macFas5.chrUn_KE146020         I 1319 C 0
s cerAty1.NW_012001098v1            181725 10 -   1025902 AAGGGAGTTC
i cerAty1.NW_012001098v1         I 2204 C 0
s chlSab2.chrUn_KE147541v1          152620 10 -    811265 AAGGGAGTTC
i chlSab2.chrUn_KE147541v1       I 3738 C 0
s manLeu1.NW_012108508v1            115345 10 -    350446 AAGGGAGTTC
i manLeu1.NW_012108508v1         I 4816 C 0
s colAng1.NW_012115411v1            279063 10 +   1230721 AAGGGAGTTC
i colAng1.NW_012115411v1         I 2720 C 0
s saiBol1.JH378345                  208680 10 +    465904 AAGGGAGCTC
i saiBol1.JH378345               I 5302 C 0
s otoGar3.GL873584                  227610 10 +  11138919 TAGGGAGCTG
i otoGar3.GL873584               C 0 C 0
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e gorGor5.CYUI01015925v1            214597 2575 +    417917 I

a score=759532.000000
s hg38.chrX_KI270880v1_alt          156120 130 +    284869 CTCTGAATAATTAATATACTCCTGGTGATAGATGATCCGCACGGTCTGGATATTAGGTTATCAATCACGACCCACTTGTTTTAAC---GTAATCCTATTGAACACGTGTCAGGAGCTGTTTACCCAGAGGTGA
s panTro5.chrX                      311277 130 + 155549662 CTCTGAATAATTAATATACTCCTGGTGATAGATGATCCGCACGGTCTGGATATTAGGTTATCAATCACGACCCACTTGTTTTAAC---GTAATCCCATTGAACACGTGTCAGGAGCTGTTTACTCAGAGGTGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61457 130 -    177848 CTTTGAATAATTAATATACTCCTGGTGATAGATGATCCGCACGGTCTGGATATTAGGTTATCAATCACGACCCACTTGTTTTAAC---GTAATCCTATTGAACACGTGTCAGGAGCTGTTTACCCAGAGGTGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217172 129 +    417917 CTCTGAATAATTAATATACTCCTGGTGATAGATGATCCGCACGGTCTGGACATTAGGTTATCAATCACGACCC-CTTGTTTTAAC---GTAATCCTATTGAACATGTGTCAGGAGCTGTTTACCCAGAGGTGA
i gorGor5.CYUI01015925v1         I 2575 C 0
s nomLeu3.chrX_GL398042_1_random      3535 130 +     35312 CTTTGAATAATTAATATATTCCTGGTGATAGATGATCCACACAGCCTGGATATTAGGTTATCAATCACAACCCACTTGTTTTAAT---GTAGTCCTATTGAACACGTGTCAGGAGCTGTTTACCCAGAGGTGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143176935 130 + 180051392 CTTTGAATAATTAATATACTCCCGGTGATAGATGATCCACGGGGCCGGGATATTACGTTATCAATCACGCCCCAGTTGTTTTAAC---GTAATCCTATCGAACACGTGTCAGGAGCTGTTTACGCAGAGATGA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15727 130 -     71016 CTTTGAATAATTAATATACTCCCGGTGATAGATGATCCACGGGGCCGGGATATTACGTTATCAATCACGCCCCAGTTGTTTTAAC---GTAATCCTATCGAACACGTGTCAGGAGCTGTTTACGCAGAGATGA
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            181735 130 -   1025902 CTTTGAATAATTAATATACTCCCGGTGATAGATGATCCACGGGGCCGGGATATTACGTTATCAATCACGCCCCAGTTGTTTTAAC---GTAATCCTATCGAACACGTGTCAGGAGCTGTTTACGCAGAGATGA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          152630 130 -    811265 CTTTGAATAATTAATATACTCCCGGTGATAGATGACCCACGGGGTCGGGATATTACGTTATCAATCACGCCCCAGTTGTTTTAAC---GTAACCCTATCGAACACGTGTCAGGAGCTGTTTACGCAGAGATGA
i chlSab2.chrUn_KE147541v1       C 0 I 57
s manLeu1.NW_012108508v1            115355 130 -    350446 CTTTGAATAATTAATATACTCCCGGTGATAGATGATCCACGGGGCCGGGATATTACGTTATCAATCACGCCCCAGTTGTTTTAAC---GTAATCCTATCGAACACGTGTCAGGAGCTGTTTACGCAGAGATGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            279073 130 +   1230721 CTTTGAATAATTAATATACTCCTGGTGATAGATGAGCCAGGGGGCCGGGATATTACGTGATCAATCACGACCCCGTTGTTTTCAC---GTCATCCTATCGAACACGTGTCAGGAGCGGTTTACGCAGAGATGA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  208690 133 +    465904 CTCTGAATAATTAATATACTCCGGGTGGTAGATGAACCTCGTGGTCTGCAGATTAGGTTATTAATCACTACCCAGTTGTTCTAACTTAGTCATCTTATTGAAAACGTGTCAGGGGCTGTTTTCACAGAGATGA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  227620 129 +  11138919 CATTGAATAATTAATATACTTCCTGTGACGGACGTTCTGC-CGGCCTGGATATTAGGTTATCAATCATGACCCACTTGTTCTAAG---GTAATCATATTGAAAACGTGTCAGAAGCTGTTTACCCACGGATGA
i otoGar3.GL873584               C 0 C 0
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=5159.000000
s hg38.chrX_KI270880v1_alt          156250 1 +    284869 C
s panTro5.chrX                      311407 1 + 155549662 C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61587 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217301 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3665 1 +     35312 C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177065 1 + 180051392 C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15857 1 -     71016 C
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            181865 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 I 66
s manLeu1.NW_012108508v1            115485 1 -    350446 C
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            279203 1 +   1230721 C
i colAng1.NW_012115411v1         C 0 I 59
s saiBol1.JH378345                  208823 1 +    465904 C
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  227749 1 +  11138919 T
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=2660.000000
s hg38.chrX_KI270880v1_alt          156251 4 +    284869 --AGCT
s panTro5.chrX                      311408 4 + 155549662 --GGCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61588 4 -    177848 --GGCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217302 4 +    417917 --GGCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3666 4 +     35312 --AGCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177066 4 + 180051392 --GGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15858 4 -     71016 --GGTG
i macFas5.chrUn_KE146020         C 0 C 0
s manLeu1.NW_012108508v1            115486 4 -    350446 --GGTG
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  208824 4 +    465904 --GGCG
i saiBol1.JH378345               C 0 I 97
s otoGar3.GL873584                  227750 4 +  11138919 GAGG--
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181866 66 -   1025902 I
e colAng1.NW_012115411v1            279204 59 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=5900.000000
s hg38.chrX_KI270880v1_alt          156255 2 +    284869 AC
s panTro5.chrX                      311412 2 + 155549662 AC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61592 2 -    177848 AC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217306 2 +    417917 AC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3670 2 +     35312 AC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177070 2 + 180051392 AC
i rheMac8.chr6                   C 0 I 51
s macFas5.chrUn_KE146020             15862 2 -     71016 AC
i macFas5.chrUn_KE146020         C 0 I 60
s manLeu1.NW_012108508v1            115490 2 -    350446 AC
i manLeu1.NW_012108508v1         C 0 I 65
s otoGar3.GL873584                  227754 2 +  11138919 GC
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181866 66 -   1025902 I
e colAng1.NW_012115411v1            279204 59 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=-1445.000000
s hg38.chrX_KI270880v1_alt          156257 2 +    284869 -AC
s panTro5.chrX                      311414 2 + 155549662 -AC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61594 2 -    177848 -AC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217308 2 +    417917 -AC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3672 2 +     35312 -AG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584                  227756 2 +  11138919 TG-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181866 66 -   1025902 I
e colAng1.NW_012115411v1            279204 59 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15864 60 -     71016 I

a score=9264.000000
s hg38.chrX_KI270880v1_alt          156259 4 +    284869 AGCA
s panTro5.chrX                      311416 4 + 155549662 AGGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61596 4 -    177848 AGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217310 4 +    417917 AGCA
i gorGor5.CYUI01015925v1         C 0 I 183
s nomLeu3.chrX_GL398042_1_random      3674 4 +     35312 AGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             15924 4 -     71016 AGCT
i macFas5.chrUn_KE146020         I 60 C 0
s cerAty1.NW_012001098v1            181932 4 -   1025902 AGCA
i cerAty1.NW_012001098v1         I 66 C 0
s colAng1.NW_012115411v1            279263 4 +   1230721 AGCA
i colAng1.NW_012115411v1         I 59 C 0
s otoGar3.GL873584                  227758 4 +  11138919 GGCA
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=-2378.000000
s hg38.chrX_KI270880v1_alt          156263 1 +    284869 -C
s panTro5.chrX                      311420 1 + 155549662 -A
i panTro5.chrX                   C 0 I 855
s panPan2.chrUn_NW_014024190v1       61600 1 -    177848 -C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217497 1 +    417917 -C
i gorGor5.CYUI01015925v1         I 183 C 0
s nomLeu3.chrX_GL398042_1_random      3678 1 +     35312 -C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             15928 1 -     71016 -C
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            181936 1 -   1025902 -C
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            279267 1 +   1230721 -C
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  227762 1 +  11138919 G-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=47585.000000
s hg38.chrX_KI270880v1_alt          156264 26 +    284869 CCCCAT------------------------TTCCAGCCAGAAAATCGTAC
s panTro5.chrX                      312276 26 + 155549662 CCCCAT------------------------TTCCGGCCAGAAAATCGTAC
i panTro5.chrX                   I 855 C 0
s panPan2.chrUn_NW_014024190v1       61601 26 -    177848 CCCCGT------------------------TTCCAGCCAGAAAATCGTAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            217498 26 +    417917 CCCCGT------------------------TTCCAGCCAGAAAATCGTAC
i gorGor5.CYUI01015925v1         C 0 I 1755
s nomLeu3.chrX_GL398042_1_random      3679 26 +     35312 CCCCGT------------------------TTCCAGCCACAAAATCGTAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             15929 26 -     71016 CCCCGT------------------------TTCCAGCCACAAAATTGTCC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            181937 26 -   1025902 CCCCGT------------------------TTCCAGCCACAGAATTGTCC
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            279268 26 +   1230721 CCCCGT------------------------TGCCAGCCACAAAATCGTAC
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  227763 47 +  11138919 -CCCATAGGCAGGCCTGCGTTTGGGGGACGTTTAGGTTTGGGGAGTGT--
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=28116.000000
s hg38.chrX_KI270880v1_alt          156290 10 +    284869 CATTTCCTTT
s panTro5.chrX                      312302 10 + 155549662 CATTTCCTTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61627 10 -    177848 CATTTCCTTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219279 10 +    417917 CATTTCCTTT
i gorGor5.CYUI01015925v1         I 1755 C 0
s nomLeu3.chrX_GL398042_1_random      3705 10 +     35312 CATTTCCTTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             15955 10 -     71016 CATTTCCTTT
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            181963 10 -   1025902 CATTTCCTTT
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            279294 10 +   1230721 CGTTTCCTTT
i colAng1.NW_012115411v1         C 0 I 16222
s otoGar3.GL873584                  227810 10 +  11138919 CATCCCCACT
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=2805.000000
s hg38.chrX_KI270880v1_alt          156300 3 +    284869 -CCT
s panTro5.chrX                      312312 3 + 155549662 -CCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61637 3 -    177848 -CCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219289 3 +    417917 -CCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3715 3 +     35312 -CCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            181973 3 -   1025902 -CCT
i cerAty1.NW_012001098v1         C 0 I 11839
s otoGar3.GL873584                  227820 3 +  11138919 GCC-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965 0 -     71016 C

a score=755.000000
s hg38.chrX_KI270880v1_alt          156303 1 +    284869 T
s panTro5.chrX                      312315 1 + 155549662 T
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61640 1 -    177848 T
i panPan2.chrUn_NW_014024190v1   C 0 I 67
s gorGor5.CYUI01015925v1            219292 1 +    417917 T
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3718 1 +     35312 C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584                  227823 1 +  11138919 T
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965 0 -     71016 C

a score=-1801.000000
s hg38.chrX_KI270880v1_alt          156304 3 +    284869 -CGA
s panTro5.chrX                      312316 3 + 155549662 -AAT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            219293 3 +    417917 -AAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3719 3 +     35312 -AAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584                  227824 3 +  11138919 GGA-
i otoGar3.GL873584               C 0 I 3
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965 0 -     71016 C
e panPan2.chrUn_NW_014024190v1       61641 67 -    177848 I

a score=2893.000000
s hg38.chrX_KI270880v1_alt          156307  8 +    284869 ----------CTGCCGCT
s panTro5.chrX                      312319  8 + 155549662 ----------CTGCCACT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61708  8 -    177848 ----------CTGCCACT
i panPan2.chrUn_NW_014024190v1   I 67 C 0
s gorGor5.CYUI01015925v1            219296  8 +    417917 ----------CTGCCGCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3722  8 +     35312 ----------CCGCCACT
i nomLeu3.chrX_GL398042_1_random C 0 T 51
s otoGar3.GL873584                  227830 15 +  11138919 CTAAGGTGGGCAGCA---
i otoGar3.GL873584               I 3 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965  0 -     71016 C

a score=5856.000000
s hg38.chrX_KI270880v1_alt          156315 11 +    284869 TCCCGACCCCT
s panTro5.chrX                      312327 11 + 155549662 TCCCGACCCTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61716 11 -    177848 TCCCAACCCTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219304 11 +    417917 TCCCGACCCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s otoGar3.GL873584                  227845 11 +  11138919 CCCCAGGGCAT
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e nomLeu3.chrX_GL398042_1_random      3730 51 +     35312 T
e chlSab2.chrUn_KE147541v1          152760 57 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965  0 -     71016 C

a score=-25.000000
s hg38.chrX_KI270880v1_alt          156326 2 +    284869 -TT
s panTro5.chrX                      312338 2 + 155549662 -TT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61727 2 -    177848 -TT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219315 2 +    417917 -TT
i gorGor5.CYUI01015925v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          152817 2 -    811265 -TT
i chlSab2.chrUn_KE147541v1       I 57 C 0
s otoGar3.GL873584                  227856 2 +  11138919 GT-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            115492 65 -    350446 I
e saiBol1.JH378345                  208828 97 +    465904 I
e nomLeu3.chrX_GL398042_1_random      3730 51 +     35312 T
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965 0 -     71016 C

a score=48275.000000
s hg38.chrX_KI270880v1_alt          156328 23 +    284869 CCCCGTTTCCGGCCAGAAAATCG
s panTro5.chrX                      312340 23 + 155549662 CCCCGTTTCCGGCCAGAAAATCG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61729 23 -    177848 CCCCGTTTCCAGCCAGAAAATCG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219317 23 +    417917 CCCCGTTTCCAGCCAGAAAATCG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3679 23 +     35312 CCCCGTTTCCAGCCACAAAATCG
i nomLeu3.chrX_GL398042_1_random T 51 C 0
s chlSab2.chrUn_KE147541v1          152819 23 -    811265 CCCCGTTTCCAGCCACAAAATCG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115557 23 -    350446 CCCCGTTTCCAGCCACAGAATTG
i manLeu1.NW_012108508v1         I 65 C 0
s otoGar3.GL873584                  227858 22 +  11138919 -CCCCTTCCCTGCCAGAAAGTCC
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  208828 97 +    465904 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177072 51 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             15965  0 -     71016 C

a score=37118.000000
s hg38.chrX_KI270880v1_alt          156351 17 +    284869 TACCATTTCCTTTCCTT
s panTro5.chrX                      312363 17 + 155549662 TACCATTTCCTTTCCTT
i panTro5.chrX                   C 0 I 1
s panPan2.chrUn_NW_014024190v1       61752 17 -    177848 TACCATTTCCTTTCCTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219340 17 +    417917 TAGCATTTCCTTTCCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3702 17 +     35312 TACCATTTCCTTTCCTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177123 17 + 180051392 TCCCATTTCCTTTCCTG
i rheMac8.chr6                   I 51 C 0
s macFas5.chrUn_KE146020             15965  4 -     71016 -------------CCTG
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152842 17 -    811265 TCTCATTTCCTTTCCTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115580 17 -    350446 TCCCATTTCCTTTCCTG
i manLeu1.NW_012108508v1         C 0 C 0
s otoGar3.GL873584                  227880 17 +  11138919 TACCCCTCCATTCCTCT
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  208828 97 +    465904 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=-1986.000000
s hg38.chrX_KI270880v1_alt          156368 1 +    284869 -A
s panPan2.chrUn_NW_014024190v1       61769 1 -    177848 -A
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219357 1 +    417917 -A
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3719 1 +     35312 -A
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177140 1 + 180051392 -A
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15969 1 -     71016 -A
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152859 1 -    811265 -A
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115597 1 -    350446 -G
i manLeu1.NW_012108508v1         C 0 C 0
s otoGar3.GL873584                  227897 1 +  11138919 T-
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  208828 97 +    465904 I
e panTro5.chrX                      312380 1 + 155549662 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=4095.000000
s hg38.chrX_KI270880v1_alt          156369 1 +    284869 A
s panTro5.chrX                      312381 1 + 155549662 A
i panTro5.chrX                   I 1 C 0
s panPan2.chrUn_NW_014024190v1       61770 1 -    177848 A
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219358 1 +    417917 A
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3720 1 +     35312 A
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177141 1 + 180051392 A
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15970 1 -     71016 A
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152860 1 -    811265 A
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115598 1 -    350446 A
i manLeu1.NW_012108508v1         C 0 C 0
s otoGar3.GL873584                  227898 1 +  11138919 A
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  208828 97 +    465904 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=72831.000000
s hg38.chrX_KI270880v1_alt          156370 25 +    284869 CCTGCCGCTTCCTGACACTTTCCCC
s panTro5.chrX                      312382 25 + 155549662 TCTGCCACTTCCTGACACTTTTCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61771 25 -    177848 TCTGCCAGTTCCTGACACTTTTCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            219359 25 +    417917 TCTGCCGCTTCCCGACCCTTTTCCC
i gorGor5.CYUI01015925v1         C 0 I 1159
s nomLeu3.chrX_GL398042_1_random      3721 25 +     35312 TCCGCCACTTCCTGACACTTTTCCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177142 25 + 180051392 TCTGCCACGTCCTGACACGTTTCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15971 25 -     71016 TCTGCCACGTCCTGACACGTTTCCC
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152861 25 -    811265 TCTGCCACGTCCTGACACGTTTCCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115599 25 -    350446 TCTGCCACGTCCTGACACGTGTCCC
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  208925 24 +    465904 CCTTCCAGTTCCTGACACTTTCCC-
i saiBol1.JH378345               I 97 C 0
s otoGar3.GL873584                  227899 21 +  11138919 ---TCTACAACTGGTGACTTTTTC-
i otoGar3.GL873584               C 0 C 0
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=36334.000000
s hg38.chrX_KI270880v1_alt          156395 8 +    284869 CCAGTGtt
s panTro5.chrX                      312407 8 + 155549662 CCAGTGtt
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61796 8 -    177848 CCAGTGtt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220543 8 +    417917 CCAGTGtt
i gorGor5.CYUI01015925v1         I 1159 C 0
s nomLeu3.chrX_GL398042_1_random      3746 8 +     35312 CCAGTGtt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177167 8 + 180051392 CCCGTGtt
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             15996 8 -     71016 CCCGTGtt
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152886 8 -    811265 CCCGTGtt
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115624 8 -    350446 CCCGTGtt
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  208949 8 +    465904 CCAGTGtt
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  227920 8 +  11138919 CCAGTGTT
i otoGar3.GL873584               C 0 I 4138
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=321383.000000
s hg38.chrX_KI270880v1_alt          156403 95 +    284869 ttagtacagatggagtttcaccatgttggccaggctggtcttcgatgggtgacttcaggtgatccgcctgcttcagcctcccaaagtgctgggat
s panTro5.chrX                      312415 95 + 155549662 ttagtacagatggagtttcaccatgttggccaggctggtcttcgatgcgtgacttgaggtgatccgcctgcttcagcctcccaaagtgctgggat
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61804 95 -    177848 ttagtacagatggagtttcaccatgttggccaggctggtcttcaatgcgtgacttcaagcgatccacctgcttcagcctcccaaagtgctcggat
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220551 95 +    417917 ttagtacagatggagtttcaccatgttggccagggtggtcttcaatacgtgacttcaagtgatccacctgcttcagcctcccaaagtgctgggat
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3754 95 +     35312 ttactacagatggggtttcaccctgttggccaggctggtcttcaatgcctgactttaactgatccacctgcttcagcctcccaaagtgctgggat
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177175 95 + 180051392 ttagtcgagatggggtttcacggtgttggccaggctggtcttcagggcctggcttcaagtaatccacctgcttccgcttcccaacgtgctggaat
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             16004 95 -     71016 ttagtcgagatggggtttcacggtgttggccaggctggtcttcagggcctggcttcaagtgatccacctgcttccgcttcccaacgtgctggaat
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152894 95 -    811265 ttagtggagatggggtttcgccgtgttggccaggctggtcttcagggcctggcttcaagtgatccacctgcttcagcctcccaaagtgctgggat
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            115632 95 -    350446 ttagtcgagatggggtttcaccgtgttggcctggctggttttcagggcctggcttcaagtgatccacctgcttcagcctcccaaagtgctgggat
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  208957 95 +    465904 ttggtagagatggggtttcaccgtgttggccaggctggtctcgaacgcctgacttcaagtgattcacctcccttggcctcccgaagtgctgggat
i saiBol1.JH378345               C 0 I 9261
e otoGar3.GL873584                  227928 4138 +  11138919 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=40992.000000
s hg38.chrX_KI270880v1_alt          156498 16 +    284869 gacaggcgtgag-ccac
s panTro5.chrX                      312510 16 + 155549662 gacaggcgtgag-ccac
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61899 16 -    177848 gacaggtgtgag-ccac
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220646 17 +    417917 gacaggcgtgagcccac
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3849 16 +     35312 tacaggtgtgag-cctc
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177270 16 + 180051392 gacaggcgtgaa-ccac
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             16099 16 -     71016 gacaagcgtgaa-ccac
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          152989 16 -    811265 gacagacgtgag-ccac
i chlSab2.chrUn_KE147541v1       C 0 I 2929
s manLeu1.NW_012108508v1            115727 16 -    350446 gacaggcgtgaa-gcac
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  209052 9261 +    465904 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=97836.000000
s hg38.chrX_KI270880v1_alt          156514 46 +    284869 tgtgcccggccTCCAGTGtttttcaaattgtggtaaaacgcacata
s panTro5.chrX                      312526 46 + 155549662 tgcgcccggccTCCAGTGtttttcaaattgtggtaaaacgcacata
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61915 46 -    177848 tgcgcccggccTCCAGTGtttttcaaattgtggtaaaacgcacata
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220663 46 +    417917 tgtgcccggccTCCAGTGCttttcaaattgtggtaaaacgcacgta
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3865 46 +     35312 tgggcccggccTCCAGTGCTTTTCAAATTCTGGTAAAATGCAAGTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143177286 46 + 180051392 ggtgtccggtcCCCAGTGTTTTTCAAATTGTAGTAAAATGTACATA
i rheMac8.chr6                   C 0 I 57
s macFas5.chrUn_KE146020             16115 46 -     71016 ggtgtccggtcCCCAGTGTTTTTCAGATTGTAGTAAAATGTACATA
i macFas5.chrUn_KE146020         C 0 I 10
s manLeu1.NW_012108508v1            115743 46 -    350446 ggtgtccggccCCCAGTGTTTTTCAGATTGTAGTAAAATGTACATA
i manLeu1.NW_012108508v1         C 0 I 6
e saiBol1.JH378345                  209052 9261 +    465904 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=51072.000000
s hg38.chrX_KI270880v1_alt          156560 55 +    284869 acacaaagtctagagcattaaccatgtattttgttttaagacagagtttcactct
s panTro5.chrX                      312572 55 + 155549662 acacaaagtctagagcattaaccatgtattttgttttaagacagagtttcactct
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       61961 55 -    177848 acacaaagtctagagcattaaccatgtattttgttttaagacagagtttcactct
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220709 54 +    417917 acacaaagtctagagcattaaccatgtatttt-ttttaagacagagtttcactct
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3911 54 +     35312 ACAGAAAGTGTACGGTGTTAACCATGttttttgtttggagatggagtgtctctc-
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             16171 48 -     71016 ACACAAAAAAAATAATAAttatta------tttttttgagacagagtctcgctg-
i macFas5.chrUn_KE146020         I 10 C 0
s manLeu1.NW_012108508v1            115795 53 -    350446 ACACAAAAATAATAATCATCATCAt-tatttttttttgagacggagtctcgctc-
i manLeu1.NW_012108508v1         I 6 C 0
e saiBol1.JH378345                  209052 9261 +    465904 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177332 57 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=549233.000000
s hg38.chrX_KI270880v1_alt          156615 265 +    284869 tg-tcgcccaggttggagtgcaatggcatgatctcggctcactgcaaactctgcctcttgggttcaagcgattctcctgcctcagtctcccgagtagctgagattacaggcgcccgccaccacgcccggctaattt--t-ttgtatttttagt--agagaccgggtttccccatgttggtgaggctggtcttgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggcgt-gagccaccgtgcccggc
s panTro5.chrX                      312627 265 + 155549662 tg-tcgcccaggctggagtgcagtggcatgatctcggctcactgtaacctccacctctcaggttcaagcgattctcctgcctcagtctcccgagtagctgtgattacaggcgcccgccaccatgcccggctaattt--t-ttgtatttttagt--agagaccgggtttccccatgttggtgaggctggtctcgaactcctgacctcaggtgatccacacgcctcagcctcccaaagtgctgggatgacaggcgt-gagccaccgcgcccggc
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       62016 265 -    177848 tg-tcgcccaggctggagtgcagtggcacgatctcggctcactgcgagctctgcctcccgggttcaagtgattctcctgcctcagtctcccgagtagctgagattacaggcgcccgccaccacgcccggctaattt--t-ttgtatttttagt--ggagacctggtttccccatgttggtgaggctggtctcgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggcgt-gagccaccgcgcccggc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            220763 267 +    417917 tgttcacccaggctggagtgcagtggcacgatctcggctcactgtaacctccgcctctcaggttcaagcgattctcctgcctcagtct-ccgagtagctgagattacaggcgcccaccacc-cgcccggctaattt--t-ttgtatttttagtagagagaccgggtttccccatgttggtgagcctggtctcgaactcctgacctcaggtgatccacttgcctcagcctcccaaagtactgggatgacaggcgtggagccaccgcgcccagc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      3965 265 +     35312 tg-tcgcccaggctggagtgcagtggtatgatctcagctcactgcaacctctgcctcccgggttcacgccattctcctgcctcagtctcccgagtagctgggactacaggtgcctgccaccacgcccggctaattttat-ttgtattttcagt--agagatggggtctcaccatgttagccaggatggtctcgatctcctgacctc--gtgatccgctcgccttggcctcctgaagtgctgggattacaggcgt-gagccaccgtgcctggc
i nomLeu3.chrX_GL398042_1_random C 0 I 6
s rheMac8.chr6                   143177389 266 + 180051392 tg-tggcccaggctggagtgcggtggcgcgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggatgacaggtgcacaccacgacacctgggtaattt--tattgtgtttttagt--acagacggagtttccccaggttggtgaggctggtctcgaactcctgacctcattcgatccaccggcctcggcctcccaaagtgctgggatgacaggtat-gagccgccgcgcccggc
i rheMac8.chr6                   I 57 C 0
s macFas5.chrUn_KE146020             16219 266 -     71016 tg-tcgcccaggctggagtgcggtggtgcgatctcggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggatgacaggtgcacaccacgacacctgggtaattt--tattgtgtttttagt--acagacggagtttccccaggttggtgaggctggtctcgaactcctgacctcattcgatccaccggcctcggcctcccaaagtgctgggatgacaggtat-gagccgccgcgcccggc
i macFas5.chrUn_KE146020         C 0 C 0
s manLeu1.NW_012108508v1            115848 265 -    350446 tg-tctcccaggctggagtgcagtggtgcgatctcagttcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtgcctgggatgacaggtgc-ccccaccacgcccggctagttt--tattgtgtttttagt--acagacggagtttccccaggttggtggggctggtctcaaactcctgacctcaggtgatccaccggccccggcctcccaaagtgctggaatgacaggcgt-gaaccacggtgtccggc
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  209052 9261 +    465904 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt          156880 1 +    284869 c
s panTro5.chrX                      312892 1 + 155549662 c
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       62281 1 -    177848 c
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            221030 1 +    417917 c
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143177655 1 + 180051392 c
i rheMac8.chr6                   C 0 I 23
s macFas5.chrUn_KE146020             16485 1 -     71016 c
i macFas5.chrUn_KE146020         C 0 I 22
s manLeu1.NW_012108508v1            116113 1 -    350446 c
i manLeu1.NW_012108508v1         C 0 I 18474
e saiBol1.JH378345                  209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random      4230 6 +     35312 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=12687.000000
s hg38.chrX_KI270880v1_alt          156881 29 +    284869 ggcattcaccgtgtg-taaatgtaca---cagc
s panTro5.chrX                      312893 32 + 155549662 ggcattcgccgtgtt-taaatgtacagctcagc
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       62282 32 -    177848 ggcattcgccgtgtg-taaatgtacagctcatc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            221031 33 +    417917 ggcatttgccgtgtgttaaatgtacagctcagc
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1            116114 18474 -    350446 I
e saiBol1.JH378345                  209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random      4230  6 +     35312 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177656 23 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I
e macFas5.chrUn_KE146020             16486 22 -     71016 I

a score=-1294.000000
s hg38.chrX_KI270880v1_alt          156910 1 +    284869 -a
s panTro5.chrX                      312925 1 + 155549662 -a
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       62314 1 -    177848 -a
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            221064 1 +    417917 -a
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             16508 1 -     71016 T-
i macFas5.chrUn_KE146020         I 22 C 0
e manLeu1.NW_012108508v1            116114 18474 -    350446 I
e saiBol1.JH378345                  209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random      4230 6 +     35312 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e rheMac8.chr6                   143177656 23 + 180051392 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=199341.000000
s hg38.chrX_KI270880v1_alt          156911 173 +    284869 gtttgaactgcagttggcttctgcagccatcaccaccatccgtatctccagaagtttctcatcttcccaaacagaaaccctgtt-ccccttacacactcactccctttccccggctgccatcaac-ctcctctccatctccatgactctgaggactccagggacctcctgtaaat
s panTro5.chrX                      312926 173 + 155549662 gtttgaactgcagttggcttctgcaaccatcaccaccatccatatctccagaagtttctcatcttcccaaacagaaactctgtt-ccccttacacactcactccctttccccggctgccatcaac-ctcctctccatctccatgactctgaggactccagggacctcctataaat
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       62315 173 -    177848 gtttgaactgcagttggcttctgcaaccatcaccaccatccatatctccagaagtttctcatcttcccaaacagaaaccctgtt-ccccttacacactcactccctttccccggctgccaccaac-ctcctctccatctccatgactctgaggactccagggacctcctataaat
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            221065 171 +    417917 gtttgaactgcagttggcttctgcagccat---caccatccatatctccagaagtttctcatcttcccaaacagaaacgctgttcccccttacacactcactccctttccttggctgccatcaac-ctcctctccatctccatgactctgaggactccagggacctcctataaat
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143177679 173 + 180051392 GTTTGAACTACATTTGGCATCtgcagccgt-gtcaccatccacatctccagaagcttctcatcttcccaaactgaaaccctgtt-ccccttacacactcaccccccttccctggctgccgccaaagctactctccgtctccatgaatccgaggacgccagggacctcctctaaat
i rheMac8.chr6                   I 23 N 0
s macFas5.chrUn_KE146020             16509 170 -     71016 GTTTGAACTACATTTGGCttctgcagccgt-gtcaccatccacatctccagaagcttctcatcttcccaaactgaaaccctgtt-ccctttacacactcgccccccttccctggctgccgccaaagctactctccgtctccatgaatccgaggacgccagggacctcgtcta---
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            116114 18474 -    350446 I
e saiBol1.JH378345                  209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random      4230   6 +     35312 I
e otoGar3.GL873584                  227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1          153005 2929 -    811265 I
e cerAty1.NW_012001098v1            181976 11839 -   1025902 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I
e macNem1.NW_012017243v1            266636 20574 +  25972781 I

a score=9400.000000
s hg38.chrX_KI270880v1_alt       157084 23 +    284869 ggaatcccaca-gtgtgtatcttt---
s panTro5.chrX                   313099 20 + 155549662 ggaatcccaca-gtgtgtatc------
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    62488 20 -    177848 ggaatcacaca-gtgtgtatc------
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         221236 20 +    417917 ggaatcccaca-gtgtgtgtc------
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020          16679 22 -     71016 --aatcccacaggggtttatc---ttt
i macFas5.chrUn_KE146020         C 0 I 22291
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random   4230  6 +     35312 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       153005 2929 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I

a score=146735.000000
s hg38.chrX_KI270880v1_alt       157107 311 +    284869 ttttttttttttttttttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacatctggttaatttttttgtatttttagtagagacgggctttcaccgtgttagccgagatggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccacggcgcccggccccaca
s panTro5.chrX                   313119 304 + 155549662 ------tttttttttttcttttttgagacggagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagcagctgggactacaggcgcccaccaccacatctggttaa-ttttttgtatttttagtagagacgggctttcaccgtgttagctgggatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccccaca
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    62508 305 -    177848 ------tttttttttttcttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggcacccaccaccatatctggttaatttttttgtatttttagtagagacgggctttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgccttggcctcccaaagtgccgggatgacaggcgcgagccaccgcgcccggccccaca
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         221256 296 +    417917 ------ttttttttttttttttttgaggcggagtctcgctctgtcacccaggctggagtgcagtggtgc-atctcggctcactgcaacctccgcctcccgggttcacgctatt---ctgcctcagtctcctgagtagctggga-tacaggtg-ccgccaccacgtctggttaa-ttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatct-ctgacctcgtgatccacc-gccttggcctcccaaagtgctgggatgacaggcgtgagccaccgcacctggccccaca
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random   4230   6 +     35312 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       153005 2929 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=196474.000000
s hg38.chrX_KI270880v1_alt       157418 265 +    284869 gtgtttatctttctgtgtctggcttcgtcactgctccaagactcacgtttgttgtagcaagcgccaaattttcttc---cttttggc--tgGCTTATGAGGATTTTaggagggacttca-gtctcccagtttgttatttattttctacgtgctttctacgtcacgcgtttcctgtgtttctgtcctcttgtgtgtttcattgatttattttta-TTTTTGTAGACACGAAGTCTTGCTCTG-TCACCCA-GTGagactccaact-------------------------------cctgggctca
s panTro5.chrX                   313423 268 + 155549662 gtgtttatctttctgtgtctggcttcgtcactgctccaagactcacgtttgttgtagcaagcaccaaattttcttccttcttttggc--tgGCTTATGAGGATTTTaggagggacttca-gtctcccagtttgttatttattttctacgtgctttctacgtcacgtgtttcctgtgtttctgtcctcttgtgtgtttcgttgatttattttta-TTTTTGTAGACACGAAGTCTTGCTGTG-TCACCCA-GTGagactccaact-------------------------------cctgggctca
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    62813 269 -    177848 gtgtttatctttctgtgtctggcttcgtcactgctccaagactcacgtttgttgtagcaagcaccaaattttcttccttcttttggc--tgGCTTATGAGGATTTTaggagggacttca-gtctcccagtttgttatttattttctacgtgctttctacgtcacgcgtttcctgtgtttctgtcctcttgtgtgtttcgttgatttattttta-tttttgtagacacgaagtcttgctctg-tcacccaggctggagagcagtg-------------------------------ccatgatTAT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         221552 272 +    417917 gtgtttatctttctgtgtctggcttcgtcactgctccaagactcacatttgttgtagcaagcaccaaattttcttccttcttttggc--tgGCTTATGAGGATTTTaggagggacttcaggtctcccagtttgttatttattttctacatgctttctacgtcacgtgtttcttgtgtttctgtcctcttgtgtgtttcgttgatttatttttattttttgtagacacgaagtcttgctctgttcacccaggctggagagcagtg-------------------------------ccgtgatTAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   4236 279 +     35312 GTGTTTGTCTTTTTGTGTCTGGCTTCGTCACTGCTCCAACACTCACGTTTGCTATAGCAAGCGCCAAATTTTCTTCCTTCTTTTGGCTGTGGCTTAGGAGGATTTTAGGGGGGACTTCA-GTCTCCCAGTTTGTTATTTATTTTCTATGTGCT-----------------------TTTCTGTCTTCTTGTGTGTTTCGTTGAtttattttta-ttttcgtagacatgaagtcttgctctg-tcacccaggctggagagcagtggtgggattttagctcactgtaacctccaattcctgggctcg
i nomLeu3.chrX_GL398042_1_random I 6 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       153005 2929 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=222362.000000
s hg38.chrX_KI270880v1_alt       157683 240 +    284869 agcaatcctcctgcctcagcctcccgagtagctgggagcacaggc--atgcaccaccacgcctggctaattttttttttttttTTTTTTTGGTAGGGACAGGCTCCTGGGGAAGAGGGGGAAGGAAAGGAGTGG----------------TCTTGGGCC-CTGTATTGTAGGA-------GTTTCTGggcttctaac----aacag-caacttgttt--------tctcccagtcccggtgtccaggagtctgagatcaaggtgtaggc------------agg-accacag-
s panTro5.chrX                   313691 232 + 155549662 agcaatcctcctgcctcagcctcccaagtagctgggagcacaggc--atgcaccaccacgcctggctaa--------cttttctgtttttggtagggacaggCTCCTGGGGAAGAGGCGGAAGGAAAGGAGTGG----------------TCTTGGGCC-CTGTATTGTAGGA-------GTTTctggggttctaac----aacag-caacatgttt--------tctcccagtcctggtgtccaggagtctgagatcaaagtgtaggc------------agg-accacag-
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    63082 233 -    177848 agcaatcctcctgcctcagcctcccgagtagctgggagcacaggc--atgcaccaccacgcccagctaa--------cttttctgtttttggtagggacaggCTCCTGGGGAAGAGGCGGAAGGAAAGGAGTGG----------------TCTTGGGCC-CTGTATTGTAGGA-------GTTTCTGGGATTCTaac----aacag-caacgtgtct--------tctcccagtcctggtgtccaggagtctgagatcaaggtgtaggc------------aggaaccacag-
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         221824 233 +    417917 agcaatcctcctgcctcagcctcctgagtagctgggagcacaggc--atgcaccaccacgcctggctaa-------ttttttttttttttgatagggacaggCTCCTGGGGAA-AGGGGGAAGGAAAGGAGTGG----------------TCTTGGGCC-CTGTATTGTAGGA-------ATTTCTGGGGTTCTAAC---Aaacag-caacttgttt--------tctcccagtcctggtgtccaggagtctgagatcaagttgtaggc------------agg-accacag-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   4515 276 +     35312 agcaatcctcctacctcagcctcccgagtagctcggagcacaggcatatgcaccaccatgcccggctaa--------cttttttgtttttggtagggacgggCTCCTGGGGAAGAGGCGGAGGGAAAGGAGTaggacacctgtcattgcatttagggcctccctaatccgggatcatcttacctctggatccttcacttatgacagacaccttatttccagataacctcccactcacaagttctggga-------attaggatgtggacagatcttttaggagg-accaCAG-
i nomLeu3.chrX_GL398042_1_random C 0 I 27
s chlSab2.chrUn_KE147541v1       155934 239 -    811265 agcaatcctccggcctcagcctcccgagtagctgggaccacaggc--atgaaccatcatgcccggctaa-ctgttttgttttttttttttggtagggacaggCTCCTGGGGAAGAGGGGGAAGGAAGGGAG-GG----------------TCTTGAACT-CTGGGTTGTAGGA-------GTGTCTGGAGTTCTaac----aacaa-caacgtgttt--------tctcccaatcctggcatccaggagtcacagatcaaggtgtgggc------------agg-accaccag
i chlSab2.chrUn_KE147541v1       I 2929 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=135900.000000
s hg38.chrX_KI270880v1_alt       157923 180 +    284869 tccctccagaggttctaggggagggtccttcctgcctctcccagctcccgggggctccaggc-ttcctgggcttgtggccgcgtcactccagtctctgcctccgttctccacgtggccttcttctctgtgtctgtgtcttctcttctgtctcttacaaggacacctgccattgcatttagg
s panTro5.chrX                   313923 179 + 155549662 tccctccagaggttctaggggagggtccttcctgcctctcccagctcctgggggctccaggc-ttcctgggcttgtggccgcatcactccagtctctgcctcc-ctctccacgtggccttctcctctgtgtctgtgtctcctcttctgtctcttacaaggacacctgtcattggatttagg
i panTro5.chrX                   C 0 I 130
s panPan2.chrUn_NW_014024190v1    63315 179 -    177848 tgcctccagaggttctaggggagggtccgtcctgcctctcccagctcccgggggctccaggc-atcctgggcttgtggatgcatcactccagtctctgcctcc-gtctccatgtggccttctcctctgtgtctgtgtctcctcttccgtctcttagaaggacacctgccattgcatttagg
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random   4818 179 +     35312 tcctcccagagactctaggggagggtccttcctgcctctcccagctcctggggcctccagca-tccctgggcttgtggctgcatcactccagtctctgcctcc-gtctccacgtggcctcttcctctgtgtctgagtctcctcttctgtctctcagaaggacactggtcataggatttagg
i nomLeu3.chrX_GL398042_1_random I 27 C 0
s chlSab2.chrUn_KE147541v1       156173 176 -    811265 tccctctggaggctctaggggaggatccttcctgcctctcccagctcctgggggctccaggcgtccccgggcttgtggccgcatcactccagtctctgcctgc-gtctccatgtggccttctc--ctgtgact--gtctcctcttctgtctcttacggagacacctgccattgcatttagg
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I
e gorGor5.CYUI01015925v1         222057   0 +    417917 C

a score=11665.000000
s hg38.chrX_KI270880v1_alt       158103 32 +    284869 gcccagcctactccaggatgacctcatctcaa
s panPan2.chrUn_NW_014024190v1    63494 32 -    177848 gcccaccctactccaggatgatctcatctcaa
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random   4997 32 +     35312 gccagttgtaatccaggatgatctcatcctat
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s chlSab2.chrUn_KE147541v1       156349 32 -    811265 gcccagcctaattcaggatgctctcatctcaa
i chlSab2.chrUn_KE147541v1       C 0 I 9011
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e panTro5.chrX                   314102 130 + 155549662 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I
e gorGor5.CYUI01015925v1         222057  0 +    417917 C

a score=8744.000000
s hg38.chrX_KI270880v1_alt       158135 55 +    284869 acttcttgagttaactgtgtctgcaaagaccctattttcaaataagttctcattc
s panPan2.chrUn_NW_014024190v1    63526 55 -    177848 acttcttgagttaactgtgtctgcaaagaccctattttcaaatacgttctcattc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random   5029 53 +     35312 aatccttcactt-attacatctgcaaagacccta-ttccaaataactccctgttc
i nomLeu3.chrX_GL398042_1_random C 0 I 3237
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e panTro5.chrX                   314102 130 + 155549662 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I
e gorGor5.CYUI01015925v1         222057  0 +    417917 C

a score=8023.000000
s hg38.chrX_KI270880v1_alt       158190 90 +    284869 acagatactgggagcttaaaacaacagaaatttatcctctcccagtcctgcagaccaggagtctgagatgaagcggtctcagggctgagc
s panPan2.chrUn_NW_014024190v1    63581 90 -    177848 acagatactgggagcttaaaacaacagaaatttatcctctcccagtcctggagaccaggagtctgagatgaaggggtctcggggctgagc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random   5082 3237 +     35312 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e panTro5.chrX                   314102 130 + 155549662 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I
e gorGor5.CYUI01015925v1         222057  0 +    417917 C

a score=147629.000000
s hg38.chrX_KI270880v1_alt       158280 650 +    284869 tccctccagaggccctaggggagggtccttcctgcctctcccagctcctg-ggggctccaggcttcctgggctt-gtggccgcatcactccagtctctgcctctgttctccacgtggccttctcctctgtgtctgtgtctcctcttctgtctcttagaaggacacctgtcaatggatttaggactcacctaatcca-ggatcatctcatttcgaaatccttgacttagttacatctgt-aaagacctcatatccgaataagattcca-ttcatgggttgagggagttagga--tgtagacatagcttttc-ggggagactatggttcaacccatTCCGATTGTATCCAgttccttctggagg-ttctaggggagggtccttcctgcctctcccagctcctgggggctccaggca-tccc-tgggcttgtggccg-cctcactcca-gtctctgcctccgtctccacgtggacttctcctctgtgtctgtgtctcctcttctgtctcttagaaagtcacctgtcattgcatttagggtccaccctcattcatgatcatctca-tctcaagatccttcacttaatcacatttgcaga-gaccctatttccaaacgatatctcattctaggttc--tgggctttaggatgtgga--cagatctttctggggg
s panPan2.chrUn_NW_014024190v1    63671 651 -    177848 tccctccagaggctctagacgagggtccttcctgcctctcccagctcctg-gggactccaggcttcctgggctt-gtggcctcatcactccagtctctgcctccgttctccacgtggccttctcctctgtgtctttgtctcctcttctgtctcttacagggacacctgtcattggatttaggactcacctagtcca-ggatcatctcatttcgaaatccttgacttagttacatctgt-aaagaccttatatccgaataagattcca-ttcatgggttgagggagttagga--tgtagacatagcttttc-ggggagactatggttcaacccaTTCCAGTTGTATCCAgttccctctggagg-ctctaggggagggtccttcctgcctctcccagctcctgggggctccaggcactcccgtggtcttgtggccg--ctcactcca-ctctctgcctccatctccacgtggccttctcctctgtgtctgtgtctcctcttctgtctcttagaaagacacctgtcattgcatttagggtccaccctcattcatgatcatctca-tctcaagatccttcacttaatcacatttgcaga-gaccctatttccaaacgatatctcattctaggttc--tgggctttaggatgtgga--cagatctttctggggg
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         222057 657 +    417917 tccctccggaggttctaggggagggtccttcctgcttctcccagctcccgaggggctccaggcttcctgggcttggtggccgcataagtccagtctctgcctccgttctccatgt-gcctcctcctctgtgtctgtgtctcctcttc-gtctcttacagggacacctgccaatggatttagggctcacttaatccagggatcatctcatttcgaaatccttgacttagttacatctgtaaaagacctcatatccgaataagattccatttcatggggttgaggagttagggatggtagaca-agcttttcgggggagactc--gttcaacccaTTCCGATTGTATCCAgttccttctggaggtttctaggggagggtccttcctgcctctcccagctcct-ggcgctccaggca-tccc-tgggcttgtggccgccttcactccaggtctctgcctccgtctccacgtggccttcctccttgtgtc--tgtctcctcttctgtctcttagaaagacacctgtcattgcatttagggcccaccctcattcatgatcacctcattctcaagatccttcacttaatcacatttgcagaggaccctatttccaaacgatatctcattc-aggttctgtgggctttaggatgtggaacaggatctttctgggg-
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random   5082 3237 +     35312 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e panTro5.chrX                   314102 130 + 155549662 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=2091.000000
s hg38.chrX_KI270880v1_alt       158930 6 +    284869 ccactg
s panTro5.chrX                   314232 6 + 155549662 ctatgg
i panTro5.chrX                   I 130 C 0
s panPan2.chrUn_NW_014024190v1    64322 6 -    177848 ccactg
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         222714 6 +    417917 ccactg
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e nomLeu3.chrX_GL398042_1_random   5082 3237 +     35312 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=27208.000000
s hg38.chrX_KI270880v1_alt       158936 47 +    284869 ttcaatccattacaATTGTA-TCCACttccttgtagaggttctagggc
s panTro5.chrX                   314238 47 + 155549662 ttcaacccaTTCCAATTGTA-TCCAgttccttctggaggttctagggg
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    64328 47 -    177848 ttcaatccattacaATTGTA-TCCACttccttgtagaggttctagggc
i panPan2.chrUn_NW_014024190v1   C 0 I 3127
s gorGor5.CYUI01015925v1         222720 48 +    417917 ttcaatccaTTACTATTGTATTCCActtcctcgtagaggttctagggc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   8319 46 +     35312 TCCAACCCACTACAATT-CG-Ttttgttccttcctgaggctgtagggc
i nomLeu3.chrX_GL398042_1_random I 3237 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=10604.000000
s hg38.chrX_KI270880v1_alt       158983 12 +    284869 aggatccttcct
s panTro5.chrX                   314285 12 + 155549662 aggatccttcct
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    67502 12 -    177848 aggatccttcct
i panPan2.chrUn_NW_014024190v1   I 3127 C 0
s gorGor5.CYUI01015925v1         222768 12 +    417917 aggatccttcct
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   8365 12 +     35312 aggatccttcat
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e otoGar3.GL873584               227928 4138 +  11138919 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=164865.000000
s hg38.chrX_KI270880v1_alt       158995 200 +    284869 gcctctcccagctcctgggggctccag-gtgtccctgggcttgtg-gccgcatcactccagtctctgcctccgtctccacgtggacttctcctctgtg------------tctg------tgtgtcctcttctgtc----tcttacaaggacacctgtcattgcatttagagctca-cctaatccag--gatgatctcacctcaagatcctcaa--cttaattacatct--
s panTro5.chrX                   314297 200 + 155549662 gcctctcccagctcctgggggctccag-gcgtccctgggcttgtg-gccccatcactccagtctctgcctcaggctctacgtggcctcctcctctgtg------------tctg------tgtctcctcttctgtc----tcttacaaagacacctgtcattgcatttagagctca-cctaatcaag--gatgatctcacctcaagatcctcaa--cttaattacatct--
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    67514 200 -    177848 gcctctcccagctcctgggggctccag-gcgtccctgggcttgtg-gccccatcactccagtctctgcctcaggctccacgtggcctcctcctctgtg------------tctg------tgtctcctcttctgtc----tcttacaaagacacctgtcattgcatttagagctca-cctaatcaag--gatgatctcacctcaagatcctcaa--cttaattacatct--
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         222780 201 +    417917 gcctctcccagctcctgggggctccag-gcattcctggacttgtgtgcagcatcactccagtctctgcctccgtctccacgtggccttctcctctgtg------------tctg------tgtgtcctcttctgtc----tcttacaaggacacctgtcattgcatttagagctca-actaatccag--gatgatctcacctcaagatcctcaa--cttaattacatct--
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   8377 205 +     35312 gcctctcccagctcctgggggctccag-gcatccctgggcttgtg-accacatcactccagtctctgcct--gtctccacgtggccttctcctctgtg------------tctgcgtctctgtctcctcttctgtc----tcttagaaggacacctgtcattgcatttggagcccaccctaatccag--gatgatgtcacctcaagatcctcaa--cttaattacatct--
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584               232066 210 +  11138919 GTCTCTCAGAGACAATGGAGGCTTCTGTGTGTCCCTCCCCACCTG--------CATTGAAGTCTCT---TCAGAGACCACCCGGCCTCCTAGGCTGTGATCACTTTGCCCACTG------CCTGGGCTCTCCTGACCCCACCTTGCATTG---CCTGGCTTTGCCTGGAGAGACAC-TTCAGGCCAGGTGAGGCTCTTAAGCCAGGTTCTCCAGACCCGAATCAGTCCTCT
i otoGar3.GL873584               I 4138 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e saiBol1.JH378345               209052 9261 +    465904 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=9163.000000
s hg38.chrX_KI270880v1_alt       159195 12 +    284869 gcaTGTG----TGAG-T----
s panTro5.chrX                   314497 12 + 155549662 gcaCGTG----TGAG-T----
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    67714 12 -    177848 gcaCGTG----TGAG-T----
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         222981 13 +    417917 gcaTGTG----TGAGTT----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   8582 12 +     35312 gcaTGTG----TGAA-T----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345               218313 12 +    465904 GCATGTA----TGTG-T----
i saiBol1.JH378345               I 9261 C 0
s otoGar3.GL873584               232276 20 +  11138919 GCTTGTGGATATGAG-CAAGC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1         116114 18474 -    350446 I
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e cerAty1.NW_012001098v1         181976 11839 -   1025902 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=3600.000000
s hg38.chrX_KI270880v1_alt       159207 1 +    284869 G
s panTro5.chrX                   314509 1 + 155549662 G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1    67726 1 -    177848 G
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1         222994 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random   8594 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1         193815 1 -   1025902 G
i cerAty1.NW_012001098v1         I 11839 C 0
s manLeu1.NW_012108508v1         134588 1 -    350446 G
i manLeu1.NW_012108508v1         I 18474 C 0
s saiBol1.JH378345               218325 1 +    465904 G
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584               232296 1 +  11138919 G
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1       156381 9011 -    811265 I
e colAng1.NW_012115411v1         279304 16222 +   1230721 I
e macNem1.NW_012017243v1         266636 20574 +  25972781 I
e macFas5.chrUn_KE146020          16701 22291 -     71016 I

a score=151682.000000
s hg38.chrX_KI270880v1_alt          159208 32 +    284869 GCTTCCCGGAGACACCCCTTTTCTCTC-------CCATT
s panTro5.chrX                      314510 32 + 155549662 GCTTCCCGGAGACACCCCTTTTCTCTC-------CCGTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67727 32 -    177848 GCTTCCCGGAGACACCCCTTTTCTCTC-------CCGTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            222995 32 +    417917 GCTTCCCGGAGACACCCCTTTTCTCTC-------CCGTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8595 32 +     35312 GCTTCCCAGAGACACCCCCTTTCTCTC-------CTGTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289459 32 + 180051392 GCTTCCCAGAGACACCCCCTTTCTCTC-------CCGTC
i rheMac8.chr6                   N 0 C 0
s macFas5.chrUn_KE146020             38992 32 -     71016 GCTTCCCAGAGACACCCCGTTTGTCTC-------CCGTC
i macFas5.chrUn_KE146020         I 22291 C 0
s macNem1.NW_012017243v1            287210 32 +  25972781 GCTTCCCAGAGACACCCCCTTTCTCTC-------CCGTC
i macNem1.NW_012017243v1         I 20574 C 0
s cerAty1.NW_012001098v1            193816 32 -   1025902 GCTTCCCGGAGACACCCCCTTTCTCTC-------CCGTC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            134589 32 -    350446 GCTTCCCGGAGACACCCCCTTTCTCTC-------CTGTC
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  218326 32 +    465904 GCTTCCCAGGGACACCCCCTTTCTCAC-------CTGTT
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232297 39 +  11138919 TCTTTTCGGAAAAGCTCGGTTTCTTTCTGGGGGGCCTTC
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          156381 9011 -    811265 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I

a score=512827.000000
s hg38.chrX_KI270880v1_alt          159240 126 +    284869 CCTTTTTCTTT-TTCCCTACCATGGA-GGACGAGGACACGCACGCACGGGAACTCAAGTTTCACCCCGTGAGTAT-TTTAGGCGTGGGGCACTTTCAG-CCCAGGTGTATGAAAATGGT-CTCATTAA-GGG
s panTro5.chrX                      314542 126 + 155549662 CCTTTTTCTTT-TTCCCTGCCGTGGA-GGACGAGGACACGCATGCACGGGAACTCAAGTTTAACCCCGTGAGTAT-TTTATGCGTGGGACATTTTCAG-CCCAGGTGCATGAAAATCGT-CTCATTAA-GGG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67759 126 -    177848 CCTTTTTCTTT-TTCCCTGCCGTGGA-GGACGAGGACACGCATGCACGGGAACTCAAGTTTAACCCCGTGAGTAT-TTTATGCGTGGGGCATTTTCAG-CCCAGGTGCATGAAAATCGT-CTCATTAA-GGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223027 125 +    417917 CCTTTTTCTTT-TCCCCTACCATGGAGGGACGAGGACACGCACGCACGGGAACTCAAGTTTAACCCCGTGAGTAT------GCGTGGGGCATTTTCAGCCCCAGGTGTATGAAAATCGTGCTCATTAAGGGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8627  79 +     35312 CCTTTTTATTT-TTCCCCACCACAGA-GGACTAGGACACGCACGCACGGGAACTCAGGTTTAACCCTGTGAATAT-TTTATG--------------------------------------------------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289491 126 + 180051392 CCTTTTGATTT-TTCCCCACCACGGA-GGACGAGGACACGCACGCCCGGAAACTCAGCTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-TGCCGGTGGATGAAAATGCT-CTAATTAA-GGG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             39024 126 -     71016 CCTTTTGATTT-TTCCCCACCACGGA-GGACGAGGACACGCACGCCCGGAAACTCAGCTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-TGCCGGTGGATGAAAATGCT-CTAATTAA-GGG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287242 126 +  25972781 CCTTTTGATTT-TTCCCCACCACGGA-GGACGAGGACACGCACGCCCGGAAACTCAGCTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-TGCCGGTGGATGAAAATGCT-CTAATTAA-GGG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            193848 126 -   1025902 CCTTTTAATTT-TTCCCTACGACGGA-GGACAAGGACACGCACGCCCGGAAACTCAACTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-TGCCGGTGGATGAAAATGCT-CTAATTAA-GGG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          165392 126 -    811265 CCTTTTGCTTT-TTCCCCACCACGGA-GGACGAAGACACGCATGCCCTGGAACTCAACTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-CACCGGTGGATGAAAATGCT-CTAATTAA-GGG
i chlSab2.chrUn_KE147541v1       I 9011 I 25
s manLeu1.NW_012108508v1            134621 127 -    350446 CCTTTTGATTT-TTCCCTACGACGGAGGGACGAGCACATGCACGGCCGGAAACTCAACTTTAACCCTGTGTGTAT-TTTATGCGTGGGGCGTTTTCAG-TGCCGGTGGATGAAAATGCT-CTAATTAA-AGG
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  218358 123 +    465904 CCTTTTTATTTGCCCCCTACCACGGA-GGACAAGGTCACACA----CGGGAACTCAGGTTT-ACCCTGGGCATATTTTTATTCGAGGGTCACTTTCAG-CTCATGTGTATGAAAATGGT-CTAATTAA-GGG
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232336 111 +  11138919 ---------CC-TTCCTCTCCACGGA-GGACGAGGGTGTGC-----TGGGTGTGTGAGTTC-GCTCCAGGCATAT-ATTATTCATCGGATGTTTTTAT-CTCCTGTGTATTAAAATTGC-CTAATGAA-GGG
i otoGar3.GL873584               C 0 C 0
e colAng1.NW_012115411v1            279304 16222 +   1230721 I

a score=80540.000000
s hg38.chrX_KI270880v1_alt          159366 33 +    284869 GACTGCTCGGATGACACATCCAGTGAG-GGTGGC
s panTro5.chrX                      314668 33 + 155549662 GACTGCTCGGATGACCCAGCCAGTGAG-GGTGGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67885 33 -    177848 GACTGCTCGGATGACCCAGCCAGTGAG-GGTGGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223152 34 +    417917 GACTGCTCGGATGACCCAGCCAGTGAGCGGTGGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8706  6 +     35312 ----------------------------CATGGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289617 33 + 180051392 TGTTCCTGAGATGACCCATGCGGTTCG-CGTGGC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             39150 33 -     71016 TGTTCCTGAGATGACCCATGCGGTTCG-CGTGGC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287368 33 +  25972781 TGTTCCTGAGGTGACCCATGCGGTTCG-CGTGGC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            193974 33 -   1025902 AGTTCCTGAGATGACCCATGCAGTTCG-CGTGGC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            134748 33 -    350446 TGTTCCTGAGATGACCCATGCGGTTCG-CGTGGC
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  218481 33 +    465904 CGCTCCTCGGGTGACCTATCCAATTAA-TGTGGC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232447 33 +  11138919 CACACCTCAGATGGCTCATTCAATTAG-GGGAGC
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          165518 25 -    811265 I
e colAng1.NW_012115411v1            279304 16222 +   1230721 I

a score=56431.000000
s hg38.chrX_KI270880v1_alt          159399 15 +    284869 ATTGCCTGTGTGGCA--
s panTro5.chrX                      314701 15 + 155549662 ATTGCCTGTGTGGCA--
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67918 15 -    177848 ATTGCCTGTGTGGCA--
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223186 15 +    417917 ATTGCCTGTGTGGCA--
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8712 15 +     35312 ATTGCCCGTGTGGTG--
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289650 15 + 180051392 GTGGCCCGTGCGGCG--
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             39183 15 -     71016 ATGGCCCGTGCGGCC--
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287401 15 +  25972781 ATGGCCTGTGCGGCC--
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            194007 15 -   1025902 ATGGCCCGTGCGGCG--
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            134781 15 -    350446 ATGGCCTGTGCGGCG--
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            295526 15 +   1230721 ATTGCCCGTGCGGCG--
i colAng1.NW_012115411v1         I 16222 C 0
s saiBol1.JH378345                  218514 15 +    465904 ATCACCCCTGCGCCA--
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232480 14 +  11138919 ---GGCTCCACGTCGTA
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          165518 25 -    811265 I

a score=271111.000000
s hg38.chrX_KI270880v1_alt          159414 51 +    284869 GTTCAAAGAATCGGAGACAAGCTCTA--GAGAGAGCGAGGacacacacaggtg
s panTro5.chrX                      314716 51 + 155549662 GTTCAAAGAATCGGAGACAAGCTCTA--GAGAGAGCGAGGacacacacaggtg
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67933 51 -    177848 GTTCAAAGAATCGGAGACAAGCTCTA--GAGAGAGCGAGGACACACACAGGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223201 49 +    417917 GTTCAAAGAATCAGAGACAAGCTCTA--GAGAGAGCG-GGACACACA-AGGTg
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8727 51 +     35312 TTTCAAAGAATCAGAGACAAGCTCTA--GAGAGAGAGAGGACACACACAGGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289665 51 + 180051392 GTTCAAAGAATCCGAGGCAAGGTCTG--GAGAGAGAGAGGACACAGGCAGGTG
i rheMac8.chr6                   C 0 I 43
s macFas5.chrUn_KE146020             39198 51 -     71016 GTTCAAAGAATCCGAGGCAAGGTCTG--GAGAGAGAGAGGACACAGGCAGGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287416 51 +  25972781 GTTCAAAGAATCCGAGGCAAGGTCTG--GAGAGAGAGAGGacacaggcaggcg
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            194022 51 -   1025902 GTTCAAAGGATCCGAGGCAAGGTCTG--CAGAGAGAGAGGACACAGGCAGGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          165543 51 -    811265 GTTCAAAGAATCCGAGGCAAGGTCTG--GAGAGAGAGAGGACACAGGCAGGTG
i chlSab2.chrUn_KE147541v1       I 25 C 0
s manLeu1.NW_012108508v1            134796 51 -    350446 GTTCAAAGAATCCGAGGCAAGGTCTG--GAGAGAGAGAGGACACAGGCAGGTG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            295541 53 +   1230721 GTTCAAAGAATCCGAGACAAGCTCTGGAGAGAGAGAGAGGACACAGGCAGGTG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218529 51 +    465904 GTTCAAAGAATCCGAGACAAGCTCCG--GATAGAGCCGGGACGCAGACATGTG
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232494 16 +  11138919 GTGGGGAGAACCCTAG-------------------------------------
i otoGar3.GL873584               C 0 C 0

a score=41177.000000
s hg38.chrX_KI270880v1_alt          159465 20 +    284869 cacgcat-cacacacacacac
s panTro5.chrX                      314767 20 + 155549662 cacgcat-cacacacacacag
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67984  7 -    177848 CACGCAT--------------
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223250 21 +    417917 cacgcgggcacgcacacacac
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      8778 20 +     35312 CATGCAT-CATACACACGCAC
i nomLeu3.chrX_GL398042_1_random C 0 I 315
s macFas5.chrUn_KE146020             39249  7 -     71016 CACGCAC--------------
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287467 20 +  25972781 cacgcat-cacagacgcacac
i macNem1.NW_012017243v1         C 0 I 6
s cerAty1.NW_012001098v1            194073 20 -   1025902 cacgcat-cacagacgcacac
i cerAty1.NW_012001098v1         C 0 I 6
s chlSab2.chrUn_KE147541v1          165594 20 -    811265 CACGCAT-CGCAGATGCACAC
i chlSab2.chrUn_KE147541v1       C 0 I 6
s manLeu1.NW_012108508v1            134847 16 -    350446 cacgcat-caca----cacac
i manLeu1.NW_012108508v1         C 0 I 6
s colAng1.NW_012115411v1            295594 20 +   1230721 cacgcat-cacagacgcacac
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218580 20 +    465904 CACGCAC-CCTCCCCCAGCGC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232510 17 +  11138919 ---GCTT-CAGATACAGACAC
i otoGar3.GL873584               C 0 C 0
e rheMac8.chr6                   143289716 43 + 180051392 I

a score=97872.000000
s hg38.chrX_KI270880v1_alt          159485 34 +    284869 gtgca---------cacgcgggcacg---------------cacacacaGGTGCACAC
s panTro5.chrX                      314787 31 + 155549662 gtgca---------cgcat---caca---------------cacacacaGGTGCACAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       67991 21 -    177848 ----------------------CACA---------------CACACACAGGTGCACAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223271 34 +    417917 gtgca---------cacgcgggcacg---------------cacacacAGGTGCCCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9113 43 +     35312 GTGCACGAGGCCGTCACAGGTGCACG---------------CACACATAGGTGCACGC
i nomLeu3.chrX_GL398042_1_random I 315 C 0
s macFas5.chrUn_KE146020             39256 29 -     71016 -----------------------------CTGTGCACACACCACACACACGAGCACAC
i macFas5.chrUn_KE146020         C 0 I 6
s macNem1.NW_012017243v1            287493 49 +  25972781 gtgca---------cacgcgggcacgcacctgtgcacacaccgcacacacgtgcacac
i macNem1.NW_012017243v1         I 6 I 6
s cerAty1.NW_012001098v1            194099 49 -   1025902 atgca---------cacgcgggcatgcacctgtgcacacaccacacagacgtgcacac
i cerAty1.NW_012001098v1         I 6 I 6
s chlSab2.chrUn_KE147541v1          165620 49 -    811265 GTGCA---------CACGCGGGCACGCACCTGTGCACACACCACACACACGTGCACAG
i chlSab2.chrUn_KE147541v1       I 6 I 6
s manLeu1.NW_012108508v1            134869 49 -    350446 atgca---------cacgcgggcacgcacctgtgcacacaccacacacacgtgcacac
i manLeu1.NW_012108508v1         I 6 I 6
s colAng1.NW_012115411v1            295614 49 +   1230721 gtgca---------cacgcgggcacgcacaggtgcacacaccacacacacgcgcacGA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218600 34 +    465904 GCGCA---------CACACAGACACG---------------CACAAACACGTGCACAC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232527 22 +  11138919 ---------------------GCACG---------------TGTCCACATGTGCACAC
i otoGar3.GL873584               C 0 C 0
e rheMac8.chr6                   143289716 43 + 180051392 I

a score=669089.000000
s hg38.chrX_KI270880v1_alt          159519 107 +    284869 GGCCATCACCCCGGCCGC--GTGAGAG-TGTTGCTTATATCGAAACCGTCTTCAGCCCAGAAGGTCACTCGTGGCAATAATGGTCT---CGTTAGACACG-CCATCCATCATTC
s panTro5.chrX                      314818 111 + 155549662 GGCCATCACACCGGCCGC--GTGAGAGGTGTTGCTTATATTGTAACGGTCTTTAGCCCAGAAGGTCACTGGGGGCAATAATGGTCTTCTCGTTAGACACG-CCATCCATCATTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68012 111 -    177848 GGCCATCACACCGGCCGT--GTGAGAGGTGTTGCTTATATTGAAACGGTCTTTAGCCCAGAAGGTCACTGGGGGCAATAATGGTCTTCTCGTTAGACACG-CCATCCGTCATTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223305 107 +    417917 GGCCATCACACC-GCCGC--GTGAGGG-TGTTGCTTATATTGAAACAGTCTTCAGCCCAGAAGGTCACTGGTGGCAATAATGGTCT---CGTTAGACACGTTCATCCATCATTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9156 108 +     35312 GGCCGTCACACCGGCCGC--ATGAGAGGTGTTGCTTCTATTGAAACGGTCTTCAGCCTGGAAGGTCACCGGTGGCAATAATGCTTT---CATTAGACACG-CCATCCATCATTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143289759 108 + 180051392 GGCCGTCACACCGGCCGC--CTGAGAGATGTGGCTCATATTGACACGGCCTTCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CGTTAGACACG-CCATCCATCATTC
i rheMac8.chr6                   I 43 I 332
s macFas5.chrUn_KE146020             39291 108 -     71016 GGCCGTCACACCGGCCGC--CTGAGAGATGTGGCTCATATTGACACGGCCTTCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CGTTAGACACG-CCATCCATCATTC
i macFas5.chrUn_KE146020         I 6 C 0
s macNem1.NW_012017243v1            287548 108 +  25972781 GGCCGTCACACCGGCCGC--CTGAGAGATGTGGCTTATATTGACACGGCCTTCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CGTTAGACACG-CCATCCATCATTC
i macNem1.NW_012017243v1         I 6 I 289
s cerAty1.NW_012001098v1            194154 108 -   1025902 GGCCGTCACACCGGCCGC--CTGAGAGATGTGGCTTATATTGACACGGTCCTCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CGTTAGACACG-CCATCCATCATTC
i cerAty1.NW_012001098v1         I 6 I 282
s chlSab2.chrUn_KE147541v1          165675 108 -    811265 GGCCGTCACACCGGCCGC--CTGAGAGATGTGGCTTATATTGACACGGTCTTCAGCCCGGAAGGTCACCGGTGGCAATAACGCGCT---CGTTAGACACG-CCATCCATCATTC
i chlSab2.chrUn_KE147541v1       I 6 I 201
s manLeu1.NW_012108508v1            134924 108 -    350446 GGCCGTCTCTCCGGCCGC--CTGAGAGACGTGGCTTATATTGACACGGCCTTCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CGTTAGACACG-CCATCCATCATTC
i manLeu1.NW_012108508v1         I 6 C 0
s colAng1.NW_012115411v1            295663 108 +   1230721 GGCCCTCACACCGGCCGC--CTGAGAGATGTAGCTTCTATTGCAACGGCCTGCAGCCCGGAAGGTCACCGGTGGCAATAATGCGCT---CATTAGACACG-CCATCCTTCATTC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218634 110 +    465904 GGCCCTCACACTGGCCTCCACTGAGAGATGTTGCTTATATTAAAACCGTCTTCAGCCCACAAGGTCACTTGTGGCAATAATGCTCT---CATTAGACACG-TCATCCATCATTC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232549  92 +  11138919 -----GCACACTGGGCGC--GTGAGA--CGCTGGTTATACCG-CGCAGCCTTCAGCCCACAGGGCCACTTGTGGCAAT-----------AATTAGACACG-TAATCCATCACTC
i otoGar3.GL873584               C 0 C 0

a score=46061.000000
s hg38.chrX_KI270880v1_alt          159626 16 +    284869 AAATAATCGCAATTTA
s panTro5.chrX                      314929 16 + 155549662 AAATAATCGCAATTTA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68123 16 -    177848 AAATAATCGCAATTTA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223412 15 +    417917 -AATAATTGTAATTTA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9264 16 +     35312 AAATAATCGCAATTCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39399 16 -     71016 CCGTAATTGCAATTTA
i macFas5.chrUn_KE146020         C 0 C 0
s manLeu1.NW_012108508v1            135032 16 -    350446 CCATAATTGCAATTTA
i manLeu1.NW_012108508v1         C 0 I 182
s colAng1.NW_012115411v1            295771 16 +   1230721 CCATAATTGCAATTTG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218744 16 +    465904 AAGTAATCGCAATTTA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232641 16 +  11138919 AAGTAATAGCGATTTA
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          165783 201 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=264022.000000
s hg38.chrX_KI270880v1_alt          159642 147 +    284869 GA-GCCCGCGTTTCATGCCGGGC-TGGTTTAATCACCAGC-AGCAGTTTGTGAAGGGCCTCATTCGCCTGGGATTCGGG--------GATATTGCGT--GATTTAGCAGACGTGACCCCTGACCTCTGCGGGGGG------------CGGAGAGCCTGCC-TTGGAGGCAAAA----
s panTro5.chrX                      314945 145 + 155549662 GA-GCCCGCGTTTCATGCCGGGC-TGGTTTAATCATTAGC-AGCGGTTTGTGAAGGGCCCCATTCACCTGGGATTCGGG--------GATATTGCGT--GATTTAGCAG--GTGACCCCTGACCTCTGCGGGGGA------------CGGAGAGCCTGCC-TTGGAGGCAAAA----
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68139 145 -    177848 GA-GCCCGCGTTTCATGCCGGGC-TGGTTTAATCATTAGC-AGCGGTTTGTGAAGGGCCCCATTCACCTGGGATTCGGG--------GATATTGCGT--GATTTAGCAG--GTGACCCCTGACCTCTGCGGGGGA------------CGGAGAGCCTGCC-TTGGAGGCAAAA----
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223427 157 +    417917 GAGGCCCGCGTTTCATGCCGGGC-TGGTTTAATCATTAGCGAGCAGTTTGTGGAGGGCCTCATTCACCT-GGATTCGGG--------GATATTGCGT--GATT--ACAG--GTGACCCCTGACCTCTGCGGGGGAGGGGGGGTGGAGCGGAGAGCCTGCCTTTGGAGGCAAAA----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9280 154 +     35312 GA-GCCCGCGTTTCATGCTGGGC-TGGTTCAATCATTAGC-AGCAGTTTGTGAATGGCCTCATTCACCTGGGATTCGGGGATATTGCGATATTGCGT--GATTTAGCAG--GTGACTCCTGACCTCTGTGGGGGG-----------GCAGGGAGCCTGCC-TTGGAGGCAAAA----
i nomLeu3.chrX_GL398042_1_random C 0 I 4
s macFas5.chrUn_KE146020             39415 117 -     71016 ------------------------TGGTTGAATCATTAGC-AGCCGTTTGTCAACCGCGTCGTTCACCTGGGATCCCG---------GATGTGCCATAGGATTTAGCAG--GTGACCCCTGACCTCTGCGCGGGG--------G--GCGGGG----------GGGGGGCAGAG----
i macFas5.chrUn_KE146020         C 0 I 47
s colAng1.NW_012115411v1            295787 149 +   1230721 GG-GCCCGCGTTTCACGCCGGCCCTGGTTGAATCGTGAGC-AGCCGTTTGTCAACCGCGCCGTTCACCTGGGATTCGG---------GATATTGCGT--GATTTAGCAG--GTGGCCCCTGACCTCTACGCGGGG--------GCAGCGAGGAGCCTGCC-TGGAAGGCAGAA----
i colAng1.NW_012115411v1         C 0 I 20
s saiBol1.JH378345                  218760 142 +    465904 GA-GACGGGGCTTCATGCCGG-C-TGGTTTAATCATTAGC-AGCAGTTTGTCAACGGCCTGATTCACCTGGGATTCGG---------GGTATTGCAT--GATTTAGCAG--GCGACCTCTGACCTCTGCG-GGCC------------CGAGGAGCCTGCC-TTAGAGGCAAAA----
i saiBol1.JH378345               C 0 I 6
s otoGar3.GL873584                  232657 143 +  11138919 GT-GCCCGGGTTTCGTGC-GGGT-TGGTTTAATCATTAGC-AGCAGTTTGTCAACTGCATAATTCACCGGGGACGCGG---------GGCAT-GCAT--GATTTAGCAG--GCGACCCTCGACCTCGGTGGAGTA------------AGGAG---CTGCC-TCGGAGGCAGGCCCAA
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135048 182 -    350446 I
e chlSab2.chrUn_KE147541v1          165783 201 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=30814.000000
s hg38.chrX_KI270880v1_alt          159789 15 +    284869 GCGGAACAGCGAGGG
s panTro5.chrX                      315090 15 + 155549662 GTGGAACAATGAGGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68284 15 -    177848 GTGGAACAATGAGGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223584 15 +    417917 GTGGAACAATGAGGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9438 15 +     35312 GCGGAACAATGAGGC
i nomLeu3.chrX_GL398042_1_random I 4 C 0
s macFas5.chrUn_KE146020             39579 15 -     71016 GCGGAACAATGAGAC
i macFas5.chrUn_KE146020         I 47 C 0
s saiBol1.JH378345                  218908 15 +    465904 GCAGAACAATGAGGC
i saiBol1.JH378345               I 6 C 0
s otoGar3.GL873584                  232800 15 +  11138919 GAGGAACAATGAGCC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135048 182 -    350446 I
e chlSab2.chrUn_KE147541v1          165783 201 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            295936 20 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=70278.000000
s hg38.chrX_KI270880v1_alt          159804 30 +    284869 TGACTCACTCAGGGACAATTATTATGCTTA
s panTro5.chrX                      315105 30 + 155549662 TGACTCACTCAGGGACAGTTATTATGCTTA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68299 30 -    177848 TGACTCACTCAGGGACAGTTATTATGCTTA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223599 30 +    417917 TGACTCACTCAGGGACAGTTATTATACTTA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9453 30 +     35312 TGACTCACTTACGGACAATTATTATGCTTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39594 30 -     71016 TCGCTCGTTCACGGGCCATTGTTAGGCTTG
i macFas5.chrUn_KE146020         C 0 C 0
s colAng1.NW_012115411v1            295956 30 +   1230721 TCACTCATTCACGGACAATTATGATGCTTG
i colAng1.NW_012115411v1         I 20 I 2
s saiBol1.JH378345                  218923 30 +    465904 TGACTCACTCGTGAACAATTATTATGCTTA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232815 30 +  11138919 GGGCTCATTCGAGAACAATTATTATGCTTA
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135048 182 -    350446 I
e chlSab2.chrUn_KE147541v1          165783 201 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=10413.000000
s hg38.chrX_KI270880v1_alt          159834 3 +    284869 ACA
s panTro5.chrX                      315135 3 + 155549662 ACA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68329 3 -    177848 ACA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223629 3 +    417917 ACA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9483 3 +     35312 ATG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39624 3 -     71016 ACA
i macFas5.chrUn_KE146020         C 0 I 2
s manLeu1.NW_012108508v1            135230 3 -    350446 ACA
i manLeu1.NW_012108508v1         I 182 C 0
s colAng1.NW_012115411v1            295988 3 +   1230721 ACA
i colAng1.NW_012115411v1         I 2 C 0
s saiBol1.JH378345                  218953 3 +    465904 ACA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232845 3 +  11138919 ACA
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          165783 201 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=165447.000000
s hg38.chrX_KI270880v1_alt          159837 42 +    284869 GCCTCACTGTCATCTTAGAA-GGAAAAAGAGCCAAAAAAAAAA
s panTro5.chrX                      315138 42 + 155549662 GCCTCACTATCATCTTAGAA-GGAAAAAGAGCCaaaaaaaaaa
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68332 42 -    177848 GCCTCACTGTCATCTTAGAA-GGAAAAAGAGCCAAAAAAAAAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223632 43 +    417917 GCCTCACTGTCATCTTAGAAGGGAAAAAGAGCCAAAAAAAAAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9486 42 +     35312 GCCTCGCTGTCATCTTAGAA-GGaaaaagagcaaaaaaaaaaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39629 42 -     71016 GGCTCCCTGTCATCTTACAA-GGAAAGAGAGCCaaaaaaaaaa
i macFas5.chrUn_KE146020         I 2 I 7
s chlSab2.chrUn_KE147541v1          165984 42 -    811265 GCCTCCCTGTCATCTTAGAA-GGAAAGAGAGCCaaaaaaaaaa
i chlSab2.chrUn_KE147541v1       I 201 C 0
s manLeu1.NW_012108508v1            135233 42 -    350446 GGCTCCCTGTCATCTTGCAA-GGAAAGAGAGCCAAAAAAAAAA
i manLeu1.NW_012108508v1         C 0 I 65
s colAng1.NW_012115411v1            295991 42 +   1230721 GCCTCCCTGTCATCTTAGAA-GGCAAGAGAGCCaaaaaaaaaa
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  218956 42 +    465904 GGCTCACTGTCATCTTGGAA-GGAAAGAGAGCCAAAAGGGGCA
i saiBol1.JH378345               C 0 I 6
s otoGar3.GL873584                  232848 42 +  11138919 GCCTGGCTGTCATTTCAGAA-GGAAAGAGGTCGAGAaaataaa
i otoGar3.GL873584               C 0 C 0
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=7683.000000
s hg38.chrX_KI270880v1_alt          159879 4 +    284869 AAAA
s panTro5.chrX                      315180 4 + 155549662 aaaa
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68374 2 -    177848 AA--
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223675 4 +    417917 AAAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9528 4 +     35312 aaaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39678 4 -     71016 aaaa
i macFas5.chrUn_KE146020         I 7 I 10
s chlSab2.chrUn_KE147541v1          166026 4 -    811265 aaaa
i chlSab2.chrUn_KE147541v1       C 0 I 66
s colAng1.NW_012115411v1            296033 4 +   1230721 aaaa
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  219004 4 +    465904 GAGA
i saiBol1.JH378345               I 6 I 14
s otoGar3.GL873584                  232890 4 +  11138919 gaaa
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=2358.000000
s hg38.chrX_KI270880v1_alt          159883 2 +    284869 AA
s panTro5.chrX                      315184 2 + 155549662 aa
i panTro5.chrX                   C 0 I 2
s nomLeu3.chrX_GL398042_1_random      9532 2 +     35312 aa
i nomLeu3.chrX_GL398042_1_random C 0 I 11
s macFas5.chrUn_KE146020             39692 2 -     71016 aa
i macFas5.chrUn_KE146020         I 10 C 0
s colAng1.NW_012115411v1            296037 2 +   1230721 aa
i colAng1.NW_012115411v1         C 0 I 56
s saiBol1.JH378345                  219022 2 +    465904 AA
i saiBol1.JH378345               I 14 C 0
s otoGar3.GL873584                  232894 2 +  11138919 gg
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e gorGor5.CYUI01015925v1            223679 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       68376 0 -    177848 C

a score=17459.000000
s hg38.chrX_KI270880v1_alt          159885 19 +    284869 TCCATAGGATGCTGAGCAT-----
s panTro5.chrX                      315188 19 + 155549662 TCCATAGGATGCTGagcat-----
i panTro5.chrX                   I 2 C 0
s panPan2.chrUn_NW_014024190v1       68376 19 -    177848 TCCATAGGATGCTGAGCAT-----
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223679 19 +    417917 TCCATAGGATGCTGAGCAT-----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9545 19 +     35312 TCCATAGGGTCCTGAATAA-----
i nomLeu3.chrX_GL398042_1_random I 11 I 4
s macFas5.chrUn_KE146020             39694 19 -     71016 TCCATAGTATCCTAAATAA-----
i macFas5.chrUn_KE146020         C 0 C 0
s saiBol1.JH378345                  219024 19 +    465904 TCCGTCGTATCCTGAATAA-----
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232896 19 +  11138919 -----aagagagaaagaaagaaag
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=1422.000000
s hg38.chrX_KI270880v1_alt          159904 2 +    284869 TC
s panTro5.chrX                      315207 2 + 155549662 tc
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68395 2 -    177848 TC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223698 2 +    417917 TC
i gorGor5.CYUI01015925v1         C 0 C 0
s otoGar3.GL873584                  232915 2 +  11138919 CC
i otoGar3.GL873584               C 0 I 26
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e saiBol1.JH378345                  219043 0 +    465904 C
e nomLeu3.chrX_GL398042_1_random      9564 4 +     35312 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e macFas5.chrUn_KE146020             39713 0 -     71016 C

a score=17939.000000
s hg38.chrX_KI270880v1_alt          159906 33 +    284869 CTTCCAGATCCTTCAGCATTCCTTCCAGATCCT
s panTro5.chrX                      315209 33 + 155549662 cttctagatccttcagcattccttccagatcct
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68397 33 -    177848 CTTCTAGATCCTTCAGCATTCCTTCCAGATCTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223700 33 +    417917 CTTCCAGATCCTTCAGCATTCCTTCCAGATCCT
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             39713 14 -     71016 -----CGAAGTATCAGGAT--------------
i macFas5.chrUn_KE146020         C 0 C 0
s saiBol1.JH378345                  219043 25 +    465904 -----TGAACCATCAGCATTCATTCCAGAT---
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e nomLeu3.chrX_GL398042_1_random      9564  4 +     35312 I
e otoGar3.GL873584                  232917 26 +  11138919 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=15157.000000
s hg38.chrX_KI270880v1_alt          159939 19 +    284869 TCAGCATTCCTTCCAGATC
s panTro5.chrX                      315242 19 + 155549662 tcagcattccttcCAGATC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       68430 19 -    177848 TCAGCATTCCTTCCAGATC
i panPan2.chrUn_NW_014024190v1   C 0 T 59
s gorGor5.CYUI01015925v1            223733 19 +    417917 TCAGCATTCCTTCCAGATC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9568 19 +     35312 TCAGCATTCCTTCCAGATC
i nomLeu3.chrX_GL398042_1_random I 4 C 0
s macFas5.chrUn_KE146020             39727 12 -     71016 -----ATTCCTTCCAGA--
i macFas5.chrUn_KE146020         C 0 C 0
s saiBol1.JH378345                  219068  4 +    465904 ------------GCTG---
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e otoGar3.GL873584                  232917 26 +  11138919 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=-880.000000
s hg38.chrX_KI270880v1_alt          159958 4 +    284869 CTTC
s panTro5.chrX                      315261 1 + 155549662 T---
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            223752 4 +    417917 CTTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9587 2 +     35312 --CC
i nomLeu3.chrX_GL398042_1_random C 0 I 2
s saiBol1.JH378345                  219072 4 +    465904 CTTC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e otoGar3.GL873584                  232917 26 +  11138919 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e macFas5.chrUn_KE146020             39739 0 -     71016 C
e panPan2.chrUn_NW_014024190v1       68449 59 -    177848 T

a score=4608.000000
s hg38.chrX_KI270880v1_alt          159962 40 +    284869 AGCATTCCTTCCAGATCCTTCAGCATTCCTTCCAGATCCT
s panPan2.chrUn_NW_014024190v1       68390 40 -    177848 AGCATTCCTTCTAGATCCTTCAGCATTCCTTCCAGATCTT
i panPan2.chrUn_NW_014024190v1   T 59 I 7365
s gorGor5.CYUI01015925v1            223756 40 +    417917 AGCATTCCTTCCAGATCCTTCAGCATTCCTTCCAGATCCT
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             39739 13 -     71016 --CACTCCCTTTAGA-------------------------
i macFas5.chrUn_KE146020         C 0 C 0
s saiBol1.JH378345                  219076  2 +    465904 ------------AG--------------------------
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e nomLeu3.chrX_GL398042_1_random      9589  2 +     35312 I
e otoGar3.GL873584                  232917 26 +  11138919 I
e panTro5.chrX                      315262  0 + 155549662 C
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e cerAty1.NW_012001098v1            194262 282 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I

a score=1146.000000
s hg38.chrX_KI270880v1_alt          160002 2 +    284869 TC
s panPan2.chrUn_NW_014024190v1       75795 2 -    177848 TC
i panPan2.chrUn_NW_014024190v1   I 7365 C 0
s gorGor5.CYUI01015925v1            223796 2 +    417917 TC
i gorGor5.CYUI01015925v1         C 0 C 0
s cerAty1.NW_012001098v1            194544 2 -   1025902 TC
i cerAty1.NW_012001098v1         I 282 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e saiBol1.JH378345                  219078 0 +    465904 C
e nomLeu3.chrX_GL398042_1_random      9589 2 +     35312 I
e otoGar3.GL873584                  232917 26 +  11138919 I
e panTro5.chrX                      315262 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e macFas5.chrUn_KE146020             39752 0 -     71016 C

a score=2260.000000
s hg38.chrX_KI270880v1_alt          160004 2 +    284869 AG
s panTro5.chrX                      315262 1 + 155549662 -G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75797 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            223798 2 +    417917 AG
i gorGor5.CYUI01015925v1         C 0 I 407
s cerAty1.NW_012001098v1            194546 2 -   1025902 AG
i cerAty1.NW_012001098v1         C 0 C 0
s otoGar3.GL873584                  232943 2 +  11138919 AG
i otoGar3.GL873584               I 26 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e saiBol1.JH378345                  219078 0 +    465904 C
e nomLeu3.chrX_GL398042_1_random      9589 2 +     35312 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e macFas5.chrUn_KE146020             39752 0 -     71016 C

a score=5067.000000
s hg38.chrX_KI270880v1_alt          160006 24 +    284869 CATTCCTTCCAGATCCCAGTTTAG
s panTro5.chrX                      315263  6 + 155549662 C------------------TTTAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75799 24 -    177848 CATTCCTTCCAGATCCCACTTTAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224207 24 +    417917 CATTCCTTCCAGATCCCGCTTTAG
i gorGor5.CYUI01015925v1         I 407 C 0
s nomLeu3.chrX_GL398042_1_random      9591  5 +     35312 -------------------TTTAG
i nomLeu3.chrX_GL398042_1_random I 2 I 1
s cerAty1.NW_012001098v1            194548 24 -   1025902 GATTCCTTCCAGATGCCCCTTTAG
i cerAty1.NW_012001098v1         C 0 I 1
s saiBol1.JH378345                  219078  1 +    465904 ----------------------A-
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232945 24 +  11138919 CATTCGCTCCAGACCCGGCTTCAC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135275 65 -    350446 I
e chlSab2.chrUn_KE147541v1          166030 66 -    811265 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143289867 332 + 180051392 I
e macNem1.NW_012017243v1            287656 289 +  25972781 I
e macFas5.chrUn_KE146020             39752  0 -     71016 C

a score=204707.000000
s hg38.chrX_KI270880v1_alt          160030 37 +    284869 --AAGAAGGCAGTGGGGTCGGTTTAAATGCACCCAGCGT
s panTro5.chrX                      315269 37 + 155549662 --AAGAAGGCAGTGGGGTCGGTTTAAACGCACCCAGCGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75823 37 -    177848 --AAGAAGGCAGTGGGGTCAGTTTAAACGCACCCAGCAT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224231 37 +    417917 --AAGAAGGCAGTGGGGTCGGTTTTAACGCACCCAGCGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9597 37 +     35312 --AAGAAGGCAGTGGGGTTGGTTTAAACGCACCCAGCAC
i nomLeu3.chrX_GL398042_1_random I 1 C 0
s rheMac8.chr6                   143290199 37 + 180051392 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i rheMac8.chr6                   I 332 C 0
s macFas5.chrUn_KE146020             39752 37 -     71016 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            287945 37 +  25972781 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i macNem1.NW_012017243v1         I 289 C 0
s cerAty1.NW_012001098v1            194573 37 -   1025902 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i cerAty1.NW_012001098v1         I 1 C 0
s chlSab2.chrUn_KE147541v1          166096 37 -    811265 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i chlSab2.chrUn_KE147541v1       I 66 I 1
s manLeu1.NW_012108508v1            135340 37 -    350446 --AAGAAGGCAGTGGGGTCGGTTGAAACGCACCCGGCGT
i manLeu1.NW_012108508v1         I 65 I 35
s saiBol1.JH378345                  219079 37 +    465904 --AAGAAGCCAGTGAGCTTGGTTTAAATGCACCCAGCGC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  232969 34 +  11138919 AAAAAAATGCAGCCACGTC----CCAGCGCACCCAGAG-
i otoGar3.GL873584               C 0 C 0
e colAng1.NW_012115411v1            296039 56 +   1230721 I

a score=5500.000000
s hg38.chrX_KI270880v1_alt          160067 1 +    284869 G
s panTro5.chrX                      315306 1 + 155549662 G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75860 1 -    177848 G
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224268 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9634 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143290236 1 + 180051392 G
i rheMac8.chr6                   C 0 I 193
s macFas5.chrUn_KE146020             39789 1 -     71016 G
i macFas5.chrUn_KE146020         C 0 I 1
s macNem1.NW_012017243v1            287982 1 +  25972781 G
i macNem1.NW_012017243v1         C 0 I 169
s cerAty1.NW_012001098v1            194610 1 -   1025902 G
i cerAty1.NW_012001098v1         C 0 I 34
s chlSab2.chrUn_KE147541v1          166134 1 -    811265 G
i chlSab2.chrUn_KE147541v1       I 1 C 0
s saiBol1.JH378345                  219116 1 +    465904 G
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135377 35 -    350446 I
e otoGar3.GL873584                  233003 0 +  11138919 C
e colAng1.NW_012115411v1            296039 56 +   1230721 I

a score=58905.000000
s hg38.chrX_KI270880v1_alt          160068 34 +    284869 CTCCCGAAGATAATGTTTTTGTTTCTGTAGACGC
s panTro5.chrX                      315307 34 + 155549662 CTCCCAAAGATGATGTTTTTGTTTCCGTAGACGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75861 34 -    177848 CTCCTGAAGATAATGTTTTTGTTTCCGTAGACGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224269 34 +    417917 CTCCCGAAGATAATGTTTTTGTTTCCGTAGACGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9635 30 +     35312 CTCCCAAAGAAAATGTC----TTTCTGTAGATGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39791 33 -     71016 CCTCCAAAGAAAACGTGTTTGTTTTCGTACACG-
i macFas5.chrUn_KE146020         I 1 C 0
s chlSab2.chrUn_KE147541v1          166135 33 -    811265 CCTCCAAAGAAAACGTGTTTGTTTTCGTACACG-
i chlSab2.chrUn_KE147541v1       C 0 C 0
s saiBol1.JH378345                  219117 33 +    465904 CCTCCAAAGAAAATGTTTTTGTTTCTGTAGAGA-
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233003 32 +  11138919 -CCCAGAAGGAAATGTTTTTGTTTCCTTAGCAG-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135377 35 -    350446 I
e cerAty1.NW_012001098v1            194611 34 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143290237 193 + 180051392 I
e macNem1.NW_012017243v1            287983 169 +  25972781 I

a score=204431.000000
s hg38.chrX_KI270880v1_alt          160102 60 +    284869 GGTGGCAGCTTTCTGGCGATTTCTAGGCAATGTACAGGAGGAAAGAAAGAAGGAAGGGGA----------
s panTro5.chrX                      315341 60 + 155549662 GGTGGCAGCTTTCTGGCGATTTCTAGGCAAGGTACAGGAGGAAAGAAAGAAGGAAGGGGA----------
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75895 60 -    177848 GGTGGCAGCTTTCTGGCGATTTCTAGGCAATGTACAGGAGGAAAGAAAGAAGGAAGGGGA----------
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224303 57 +    417917 GGTGGCAGCTTTCTGGCGATTTCTA-GCAAGGTACAGGA-GAAAGAAAGAAGGAA-GGGA----------
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9665 55 +     35312 GGTTGCAGCTTTCTGGTGATTTCTGGGCAATGTACaggaggaaagaaagaaggaa---------------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             39824 60 -     71016 GGTTGCAGCTTTGCGGCGATCTCCGGGCCACACACAGGAGGAAAGAAACAAGGAAGGgga----------
i macFas5.chrUn_KE146020         C 0 I 61
s cerAty1.NW_012001098v1            194645 60 -   1025902 GGTTGCAGCTTTGTGGCGATTTCCGGGCCACACACAGGAGGAAAGAAAGAAGGAAGGGGA----------
i cerAty1.NW_012001098v1         I 34 I 75
s chlSab2.chrUn_KE147541v1          166168 60 -    811265 GGTCGCAGCTTTGTGGCGATTTCTGGGCCACACGCGGGAGGAAAGAAAGAAGGAAGGGGA----------
i chlSab2.chrUn_KE147541v1       C 0 I 2287
s manLeu1.NW_012108508v1            135412 60 -    350446 GGTTGCAGCTTTGTGGCGATTTCCGGGCCACACACAGGAGGAAAGAAAGAAGGAAGGgga----------
i manLeu1.NW_012108508v1         I 35 I 75
s saiBol1.JH378345                  219150 60 +    465904 GGTTGCAGCTTTCTGATGATTTCTGAGCAATGCACAGGAGGAAAGACAGAAGAAAGGGGA----------
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233035 66 +  11138919 AGTCGCAGCTTTCTGGAGATTTCCA-GAAAGGCACAG---GAAACAAAAAAGGAAGAGGGACCCTAAGCT
i otoGar3.GL873584               C 0 C 0
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143290237 193 + 180051392 I
e macNem1.NW_012017243v1            287983 169 +  25972781 I

a score=31543.000000
s hg38.chrX_KI270880v1_alt          160162 54 +    284869 GGGCAC-GGAGAAGCTCCGGAaggct-ggatgcttggggaaggaggtca---------ggaggca
s panTro5.chrX                      315401 54 + 155549662 GGGCAT-GGTGAAGCTCcagaaggct-ggatgcttggggaaggaggcca---------ggaggca
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       75955 54 -    177848 AGGCAC-GGAGAAGCTCCGGAAGGCT-GGATGCTTGGGGAAGGAGGTCA---------GGAGGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224360 62 +    417917 GGGCACGGGAGAAGCTCCGGAAGGCT-GGATGCTT--GGAAGGAGGCCAGGAGGCCAGGGAGGCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9720 12 +     35312 --------------------------------------------ggcca---------ggaggca
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  219210 53 +    465904 -AGCCA-GGAGAAGCCCCAGAAGGCT-GGATGCTTTGAGAAGGAGGCCA---------GGAGGCA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233101 44 +  11138919 GAGCCC-TGGGAAG-----GAAGGCTGGGATGCTT-----CGGAGAGTA---------GGTGGC-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135472 75 -    350446 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194705 75 -   1025902 I
e colAng1.NW_012115411v1            296039 56 +   1230721 I
e rheMac8.chr6                   143290237 193 + 180051392 I
e macNem1.NW_012017243v1            287983 169 +  25972781 I
e macFas5.chrUn_KE146020             39884 61 -     71016 I

a score=19897.000000
s hg38.chrX_KI270880v1_alt          160216 17 +    284869 ggaCCGGCCGGCCGCCC
s panTro5.chrX                      315455 17 + 155549662 ggaCCGGCCGGCTGCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76009 17 -    177848 GGACTGGCCGGCCGCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224422 16 +    417917 GGAC-GGCCGGCCGCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9732 17 +     35312 ggaCTGGCCGGCCGCCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s colAng1.NW_012115411v1            296095 16 +   1230721 GGACCGGCC-GCCGCCC
i colAng1.NW_012115411v1         I 56 C 0
s saiBol1.JH378345                  219263 16 +    465904 GGACCGGCC-CCTGCTC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233145  6 +  11138919 -----------TTGCTC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135472 75 -    350446 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194705 75 -   1025902 I
e rheMac8.chr6                   143290237 193 + 180051392 I
e macNem1.NW_012017243v1            287983 169 +  25972781 I
e macFas5.chrUn_KE146020             39884 61 -     71016 I

a score=44605.000000
s hg38.chrX_KI270880v1_alt          160233 10 +    284869 TCCAGACGTC
s panTro5.chrX                      315472 10 + 155549662 TCCAGATGTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76026 10 -    177848 TCCAGACGTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224438 10 +    417917 TCCAGACATC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9749 10 +     35312 TCCGGACGTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143290430 10 + 180051392 tccggatgtc
i rheMac8.chr6                   I 193 C 0
s macNem1.NW_012017243v1            288152 10 +  25972781 tccggatgtc
i macNem1.NW_012017243v1         I 169 C 0
s cerAty1.NW_012001098v1            194780 10 -   1025902 TCCAGATGTC
i cerAty1.NW_012001098v1         I 75 C 0
s manLeu1.NW_012108508v1            135547 10 -    350446 tccagatgtc
i manLeu1.NW_012108508v1         I 75 C 0
s colAng1.NW_012115411v1            296111 10 +   1230721 TCCAGACATC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  219279 10 +    465904 TGCAGATGTC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233151 10 +  11138919 CCCAGGTAGC
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e macFas5.chrUn_KE146020             39884 61 -     71016 I

a score=504988.000000
s hg38.chrX_KI270880v1_alt          160243 88 +    284869 CAGATGTCCAGACGTCCAGCCAGCCGGA-CACCGGTCTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
s panTro5.chrX                      315482 88 + 155549662 CAGATGTCCAGACGTCCAGCCAGCCGGA-GACCGGTCTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76036 88 -    177848 CAGATGTCCAGACGTCCAGCCAGCCGGA-GACCGGTCTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCCCAGG--CATCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224448 89 +    417917 CAGATGTCCAGACGTCCAGCCAGCCGGAGGACCGGTCTGCACCTGTCC---CAGGTAAGCAGCATTTGTTAGCAACGTCTGCACAGG--CATCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9759 88 +     35312 CAGATGTCCAGATGTCCAGCCAGCCGGA-GACCGGTCTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGTGACGTCTGCACAGG--CATGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143290440 88 + 180051392 cagatgtccggatgtccAGCCAGCCGGG-GACCGGTGTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             39945 88 -     71016 CAGATGTCCGGACGTCCAGCCAGCCGGG-GACCGGTGTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i macFas5.chrUn_KE146020         I 61 C 0
s macNem1.NW_012017243v1            288162 88 +  25972781 cagatgtccggacgtccAGCCAGCCGGG-GACCGGTGTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            194790 88 -   1025902 CAGATGTCCGGACGTCCAGCCAGCCGGG-GACCGGTGTGCACCTGTCA---CAGGTGAGTAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            135557 88 -    350446 cagatgtccggacgtccagCCAGCCGGG-GACCGGTGTGCACCTGTCA---CAGGTGAGCAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            296121 91 +   1230721 CAGACGTCCGGACATCCAGCCAGCCGGA-GACCGGTGTGCACCTGTCACAGCAGGTGAGTAGCATTTGTTAGCGACGTCTGCACAGG--CATCA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  219289 88 +    465904 CAGATGTCCAGACTTCCAGCCGGCCGGG-GACCGGTCTGCACCCGTCA---CAGGTGAGCTGCATTTCTCAGGGACGTCTGCACAGG--CATCA
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233161 83 +  11138919 ----TGGAGGGAGGGTGCGTGAGCCGG--CACTGACCTGTGACTGTGG---C-GGTGAGCAGAATCAGCCGGAAA-GTCTACCCAGGGACATCA
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I

a score=4500.000000
s hg38.chrX_KI270880v1_alt          160331 1 +    284869 G
s panTro5.chrX                      315570 1 + 155549662 G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76124 1 -    177848 G
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224537 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9847 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143290528 1 + 180051392 G
i rheMac8.chr6                   C 0 I 25
s macNem1.NW_012017243v1            288250 1 +  25972781 G
i macNem1.NW_012017243v1         C 0 I 22
s manLeu1.NW_012108508v1            135645 1 -    350446 G
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            296212 1 +   1230721 G
i colAng1.NW_012115411v1         C 0 I 293
s otoGar3.GL873584                  233244 1 +  11138919 G
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  219377 0 +    465904 C
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194878 0 -   1025902 C
e macFas5.chrUn_KE146020             40033 0 -     71016 C

a score=27587.000000
s hg38.chrX_KI270880v1_alt          160332 19 +    284869 TTGGGTAAAGGATGTTCCC
s panTro5.chrX                      315571 19 + 155549662 TTGGGTAAAGGACGTTCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76125 19 -    177848 TTGGGTAAAGGATGTTCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224538 18 +    417917 -TGGGTAAAGGACGTTCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9848 19 +     35312 ATGGGTAAAGGATGTTCCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s manLeu1.NW_012108508v1            135646 19 -    350446 ACGGGTGCAGGATGTTCCC
i manLeu1.NW_012108508v1         C 0 I 3
s otoGar3.GL873584                  233245 19 +  11138919 GCAGGTGGAGGATTTTCCC
i otoGar3.GL873584               C 0 I 114
e saiBol1.JH378345                  219377  0 +    465904 C
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194878  0 -   1025902 C
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529 25 + 180051392 I
e macNem1.NW_012017243v1            288251 22 +  25972781 I
e macFas5.chrUn_KE146020             40033  0 -     71016 C

a score=464627.000000
s hg38.chrX_KI270880v1_alt          160351 582 +    284869 Gtgttgta-cctggagcgagttagagaaaacgccacactttgagacgaattaagagtccgtttatttagccggcggccaagagacggctaacgctcaaagttctctcggccccgaagaaggggctagattttttttttatactttggtttagaaaggggaggggg--atctagcgaaaaccattttacagaaataaagtaggcaaaaaag-ttaaaaggataaatggttacagggaagtaaa------caggtgcagggcctttaagactattacaaggtgatagacgcagggcttcgggcgttagtaatcagacgaattcctgggaattgcggatatagctcgccacagtatcttatcagttaattgcattcttggatgtgctgggagtcagcttgcacgagttcagtccttgaggaaggggctgccagtgaaagagccatgatggagtctgtctggttctcttagctaagggtgagtccattcaggtggaaacaaggc--taggtgattgaaggaaaagggagagtctaaaaacagggttagtaaaaaggaggttgggcattacaGGTGAAACCCCGTCTGCCCGAGCCAGC
s panTro5.chrX                      315590 580 + 155549662 Gtgttgta-cctg-agcgagttagagaaaacgccacactttgagacgaattaagagtccgtttatttagccggtggccaagagacggctaacgctcaaagttcgctcggccctgaagaaggggctagattttttttt-atactttggtttagaaaggggaggggg--gtgtagtgaaaaccattttacaggaataaagtaggcaaaaaag-ttaaaaggataaatggttaccgggaagtaaa------caggtgcaggggctttaagactattacaaggtgaaagacgtggggctttgggcgttatcaatcggacgaattcctgggaatttcggatatagctcgccacagtatcttatcagttaattgcattcttggatgtgctgggactcagcttgcacgagttaagtccttgaggaaggggctgccagggaaagagccaagatgcagtctgtctgcttctcttagctaagggtgagtccattcaggtggaaacaaggc--taggtgagtaaaggaaaagggagagcctaaaaacagggttagtaaaaacgaggttgggcattacaGGTGAAACCCCGTCTGCCTGAGCCAAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76144 584 -    177848 Gtgttgta-cctg-agcgagttagagaaaacgccacactttgagacgaattaagagtccgtttatttagctggcggccaagagatggctaacgctcaaagttctctcggccccgaagaaggggatagatttttttt--atactttggtttagaaaggggaggggg---tctagtgaaaaccattttacagaaataaagtaagcaaaaaag-ttaaaaggataaatggttacaggaaagtaaacagttccaggtgcaggggctttaagactattacaaggtgaaagacgtggggctttgggcgttatcaataggacgaattcctgggaactgcggatatagcttgccacagtatcttatcagttaattgcattcttggatgtgctgggagtcagcttgcacgagtcaagtccttgaggaaggggctgccagtgaaagagccaagatggagtctgtctggttctcttagcgaagggtgagtccattcaggtggaaacaaggc--taggtgattgaaggaaaagggagagtctaaaaacagggttagtaaaaacaaggttgggcattacaGGTGAAACCCCGTCTGCCTGTGCTAAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            224556 576 +    417917 Gtgttgtaccctg-agcgagttagagaaaacgccacactttgagacgaattaagagtccgtttatttagccggcggccaagagacggctaaccctcaaagttctctcagccctgaagaaggggctagattttttttt-atactttggtttagaaaggtaggggg----tgtagtgaaaaccattttacagaaataaagtaggcaaaaaagtttaaaaggataaatggttacagggaagtaaa------caggtgcaggggctttaagactattacaaggtgaaagacgt-gggctttgggcgttatcaatcggacgaattcctgggaattgcggatatagcttgccaccgtatcttatcagttaattgcattcttggatgtgctgggagtcagcttgcaccagttaagtccttgaggaa-gggctgccagtgaaagagccaagatgcagtctgtctggttctcttagctaagggagagtccattcaggtggaaacaaggc--taggtgattgaaggaaaa-ggagagtctaaaaacagggttagtaaaaacgaggtt-ggcattacaGTTGAAACCCCGTCTGCCTGAGCCAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random      9867 586 +     35312 Ttgctgta-gctg-aacgagttagagaaaacgccacacttggagacgaattaagagtccgtttatttagccagtggccaagagaccgctaacgttcaacgttctctcggccccaaagaaggggctagattttttttt-atactttggtttggaaacgggagggggaggtctagtgaaaacaattttacagaaataaagtaggcaaaaaag-ttaaaaggataaatggttacagggaagtaaacagttgcaggtgcaggagctttaagactattacaaggtgaaagacgcggggctttgggcgttatcaatcggacgaattcctgggaactgcggatatagcttgccagagtatcttatcggctaattgcattcttggatatgctgggagt-agcttgcataagttaactcctggaggaaggggctgccagtgaaagagccaagatg--gtctgtctggttctcttagctaagggagagtccattcaggtggaaacaaggctataggtgattaaaggaaag-ggagagtctaaaaacagggttagtaaaaatgaggttgggcattacaGGTGAAACCCCGTCTGCCTGTGCTAAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            135665   3 -    350446 I
e saiBol1.JH378345                  219377   0 +    465904 C
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194878   0 -   1025902 C
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529  25 + 180051392 I
e macNem1.NW_012017243v1            288251  22 +  25972781 I
e macFas5.chrUn_KE146020             40033   0 -     71016 C

a score=113510.000000
s hg38.chrX_KI270880v1_alt          160933  90 +    284869 AAACGCTGCTCACCCGTGACAGGTGCAGACCCGGTCTC---------------------------------------------CGGCTGGTCCTGCCTCCTGGCCTCCTTCCCGAAGCATCCAGCCTTCCGGAGC
s panTro5.chrX                      316170 116 + 155549662 AAATGCTGCTCACCTGTGACAGGTgcaggcc-ggtctctggctggctggacgtccg----------------cagggc--ggccggccggtcctgcctcctggccTCCTTCCCGAAGCATCCAGCCTTCCGGAGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76728 116 -    177848 AAATGCTGCTCACCTGTGACAGGTGCAGACC-GGTCTCTggctggctggacgtccg----------------cagggc--ggccggccggtcctgcctcctggccTCCTTCCCGAAGCATCCAGGCTTCCGGAGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225132 118 +    417917 AAATGCTGCTCACCTGTGACAGGTgcaggcc-ggtctccggctggctggacgtccg----------------cagggcggggccggccggTCCCGCTCTCCTGCCTCCTTCCCGAAGCATCCAGCCTTCCGGAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     10453 124 +     35312 AAATGCTGCTCACCTGTGACAGGTGCAGACC-GGTCTCCAGCTGGCTGGATGTCTG--------GACATCTAGAGGGT--GACCGGCCGGTCCTGCCTCCTGGCCTCCTTCCCGAAGCATCCAGCCTTCCAGAGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  246552 131 -    465904 AAATGCAGCTCACCTGTGACGGGTGCAGACC-GGTCCCCGGCCGGCTGGAAGTCTGGACATCTGGACATCTGCAGAGC--AG-GGGCCGGTCCTGCCTCCTGGCCTCCTTCTCAAAGCATCCAGCCTTCTGGGGC
i saiBol1.JH378345               n 0 T 20837
e manLeu1.NW_012108508v1            135665   3 -    350446 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194878   0 -   1025902 C
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529  25 + 180051392 I
e macNem1.NW_012017243v1            288251  22 +  25972781 I
e macFas5.chrUn_KE146020             40033   0 -     71016 C

a score=6730.000000
s hg38.chrX_KI270880v1_alt          161023 7 +    284869 ACAGGCA
s panTro5.chrX                      316286 7 + 155549662 ACAGGCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76844 7 -    177848 ACAGGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225250 7 +    417917 ACAGGCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     10577 7 +     35312 ACAGGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            135665 3 -    350446 I
e saiBol1.JH378345                  246683 20837 -    465904 T
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194878 0 -   1025902 C
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529 25 + 180051392 I
e macNem1.NW_012017243v1            288251 22 +  25972781 I
e macFas5.chrUn_KE146020             40033 0 -     71016 C

a score=42028.000000
s hg38.chrX_KI270880v1_alt          161030 21 +    284869 GACGGGTACA-GGATGGTCCCC
s panTro5.chrX                      316293 21 + 155549662 GACGGGTACT-GGATGGTCCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76851 21 -    177848 GACGGGTACA-GGATGGTCCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225257 22 +    417917 GACGGGTACAGGGATGGTCCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     10584 21 +     35312 GACGGGTACG-GGATGTTCCCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             40033 21 -     71016 GACGGGTGCA-CGATGTTCCCC
i macFas5.chrUn_KE146020         C 0 I 2
s cerAty1.NW_012001098v1            194878 21 -   1025902 GACAGGTGCA-GGATGTTCCCC
i cerAty1.NW_012001098v1         C 0 I 2
s saiBol1.JH378345                  219377 21 +    465904 GAAGGGTACA-GGATGTCCCCC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135665  3 -    350446 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529 25 + 180051392 I
e macNem1.NW_012017243v1            288251 22 +  25972781 I

a score=12825.000000
s hg38.chrX_KI270880v1_alt          161051 3 +    284869 -AGG
s panTro5.chrX                      316314 3 + 155549662 -AGG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76872 3 -    177848 -AGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225279 3 +    417917 -AGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     10605 3 +     35312 -AGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             40056 3 -     71016 -AGG
i macFas5.chrUn_KE146020         I 2 C 0
s macNem1.NW_012017243v1            288273 3 +  25972781 -AGG
i macNem1.NW_012017243v1         I 22 C 0
s cerAty1.NW_012001098v1            194901 3 -   1025902 -AGG
i cerAty1.NW_012001098v1         I 2 C 0
s manLeu1.NW_012108508v1            135668 3 -    350446 -AGG
i manLeu1.NW_012108508v1         I 3 C 0
s saiBol1.JH378345                  219398 4 +    465904 AAGG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290529 25 + 180051392 I

a score=142468.000000
s hg38.chrX_KI270880v1_alt          161054 30 +    284869 CCCTCATTCACTTGGAAGCAACAGGAGAAA
s panTro5.chrX                      316317 30 + 155549662 CCCTCATTCACTTGGAGGCAACAGGAGAAA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76875 30 -    177848 CCCTCATTCACTTGGAGGCAACAGGAGAAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225282 30 +    417917 CCTTCACTCACTTGGAGGCAACAGGAGAAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     10608 30 +     35312 CCCTCATCCACTTGGAGGCAGCAggagaaa
i nomLeu3.chrX_GL398042_1_random C 0 I 5696
s rheMac8.chr6                   143290554 30 + 180051392 CCCTTATTCACTTGGAGGCAACAGGAGAAA
i rheMac8.chr6                   I 25 C 0
s macFas5.chrUn_KE146020             40059 30 -     71016 CCCTTATTCACTTGGAGGCAACAGGAGAAA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            288276 30 +  25972781 CCCTTATTCACTTGGAGGCAACAGGAGAAA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            194904 30 -   1025902 CCCTTATTCACTTGGAGGCAACAGGAGAAA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            135671 30 -    350446 CCCTTATTCACTTGGAGGCAACAGGAGAAA
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  219402 30 +    465904 CTCTCACTCATTTGGAGGCAACAGGAGAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I

a score=32244.000000
s hg38.chrX_KI270880v1_alt          161084 19 +    284869 ATCCTCTATTGCATTTCTG
s panTro5.chrX                      316347 19 + 155549662 ATCCTCTATTGCATTTCTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76905 19 -    177848 ATTCTCTATTGCAGTTCTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225312 19 +    417917 ATCCCCTATTGCATTTCTG
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290584 19 + 180051392 ACCCTCCATTGCATTTCTG
i rheMac8.chr6                   C 0 I 56
s macFas5.chrUn_KE146020             40089 19 -     71016 ACCCTCCATTGCATTTCTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            288306 19 +  25972781 ACCCTCCATTGCATTTCTG
i macNem1.NW_012017243v1         C 0 I 168
s cerAty1.NW_012001098v1            194934 10 -   1025902 ACCCTCCATT---------
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            135701 10 -    350446 ACCCTCCATT---------
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  219432  6 +    465904 ACCCTC-------------
i saiBol1.JH378345               C 0 C 0
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I

a score=54957.000000
s hg38.chrX_KI270880v1_alt          161103 38 +    284869 CAGCCGTCCGCATTTCTGCGCAC------AGAGACGGTTAAATG
s panTro5.chrX                      316366 38 + 155549662 CAGCCGTCCGCATTTCTGCGCAC------AGAGACGGTTAAATG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76924 38 -    177848 CAGCCGTCCGCATTTCTGCGCAC------AGAGACGGTTAAATG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225331 37 +    417917 CAGCCGTCCGCGTTTCTGCGCAC------AGA-ACGGTTAAATG
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             40108 22 -     71016 ----------------TGCGCGC------AGAGACACTTAAATG
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            194944 29 -   1025902 ---------GCATTTCTGCGCGC------AGAGACGGTTAAATG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            135711 29 -    350446 ---------GCATTTCTGCGCGC------AGAGACGGTTAAATG
i manLeu1.NW_012108508v1         C 0 I 3413
s saiBol1.JH378345                  219438 39 +    465904 -----ATCTGCATTTCTGCACACAGTGAGAGAGAGAGTTAAATG
i saiBol1.JH378345               C 0 C 0
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290603 56 + 180051392 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=501.000000
s hg38.chrX_KI270880v1_alt          161141 1 +    284869 C
s panTro5.chrX                      316404 1 + 155549662 C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76962 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225368 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             40130 1 -     71016 T
i macFas5.chrUn_KE146020         C 0 I 5
s cerAty1.NW_012001098v1            194973 1 -   1025902 T
i cerAty1.NW_012001098v1         C 0 I 40
s saiBol1.JH378345                  219477 1 +    465904 T
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290603 56 + 180051392 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=19929.000000
s hg38.chrX_KI270880v1_alt          161142 29 +    284869 ---TTGTCATTTAACTTGTCATTCTCTCCATA
s panTro5.chrX                      316405 29 + 155549662 ---TTGTCATTTAACTTGTCATTCTGTCTGTA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76963 29 -    177848 ---TTGTCATTTAACTTGTCATTCTGTCCGTA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225369 29 +    417917 ---TTGTCATGTAACTTGTCATTCTGTCCGTA
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             40136 28 -     71016 ---GTGTGATTT-GCTTGTCATTCTGAGCGTG
i macFas5.chrUn_KE146020         I 5 C 0
s saiBol1.JH378345                  219478 31 +    465904 GTGGTCTGATTT-GCTCGCCACTCGGACTGCA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194974 40 -   1025902 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e rheMac8.chr6                   143290603 56 + 180051392 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=5078.000000
s hg38.chrX_KI270880v1_alt          161171 5 +    284869 ACACA
s panTro5.chrX                      316434 5 + 155549662 ACACA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76992 5 -    177848 ACGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225398 5 +    417917 ACACA
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290659 5 + 180051392 ACACC
i rheMac8.chr6                   I 56 C 0
s macFas5.chrUn_KE146020             40164 5 -     71016 ACACC
i macFas5.chrUn_KE146020         C 0 C 0
s saiBol1.JH378345                  219509 5 +    465904 GCAGA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            194974 40 -   1025902 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=52555.000000
s hg38.chrX_KI270880v1_alt          161176 24 +    284869 GTGTTCTATTTTTATTTCCATCGG
s panTro5.chrX                      316439 24 + 155549662 GTGTTCTATTTTTATTTCCATCGG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       76997 24 -    177848 GTGTTCTATTTTTATTTCCATCGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225403 24 +    417917 GTGTTCTATTTTTATTTCCATCGG
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290664 24 + 180051392 GTGTCCTGTTTTGATTTCCATCGG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             40169 24 -     71016 GTGTCCTGTTTTGATTTCCATCGG
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            195014 24 -   1025902 GTGTCCTGTTTTGATTTCCATCGG
i cerAty1.NW_012001098v1         I 40 C 0
s saiBol1.JH378345                  219514 24 +    465904 GTCTCCTAGTTTTATTTCCGTCGG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233264 114 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=155332.000000
s hg38.chrX_KI270880v1_alt          161200 81 +    284869 TGC-AAAGCTCATCACTCTCCGTCCCCTCCTGCCTGGGATGCTTGCAG-CCCCCTTCCTGAGACGGTGGCGAT-----CCCCCAGTAC
s panTro5.chrX                      316463 81 + 155549662 TGC-AAAGCTCATCACTCTCCGTCCCCTCCTGCCTGGGATGCTTGCAG-CCCCCTTCCTGAGACGGTGGTGAT-----CCCCCAGTAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77021 81 -    177848 TGC-AAAGCTCATCACTCTCCGTCCCCTCCTGCCTGGGATGCTTGCAG-CCTCCTTCCTGAGACGGTGGCGAT-----CCCCCAGTAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225427 83 +    417917 TGCAAAAGCTCATCACTCTCCATCCCCTCCTGCCTGGGATGCTTGCAGCCCCCCTTCCTGAGACGGTGGCAAT-----CCCCCAGTAC
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290688 85 + 180051392 TGG-CAGGTGCATTACTCTCCATCGCCTCCCACCCAGGATGTTTGCAG-CCCCCGTAGTGAGACGGTGGCGAC-GCCCCCCACAGTGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             40193 86 -     71016 TGG-CAGGTGCATTACTCTCCATCGCCTCCCACCCAGGATGTTTGCAG-CCCCCGTAGTGAGACGGTGGCGACGGCCCCCCACAGTGT
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            195038 85 -   1025902 TGG-CAGGTGCATTACTCTCCATCGCCTCCCACCCAGGATGTTTGCAG-CCCCCGTAGTGAGATGGTGGTGAC-GCCCCCCACAGTGT
i cerAty1.NW_012001098v1         C 0 C 0
s saiBol1.JH378345                  219538 80 +    465904 TGG-AAAGCTCATGACTCTCCATTCCCTCCTGCCCGGGATGTTTGCAG-CCCTCTTAATGAGACGGTGGTGAC------CCCCAGTGC
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233378 80 +  11138919 TGC-CAAACCCATTACTCTCCGTCTCCTGTC-CCTGGAAGCCCCAGCG-GGCCCTGGCTGAGGTGGTGGTGAC---CCCCTCCAAC--
i otoGar3.GL873584               I 114 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I
e macNem1.NW_012017243v1            288325 168 +  25972781 I

a score=102981.000000
s hg38.chrX_KI270880v1_alt          161281 36 +    284869 -----CAGATTTTTGGTGATCCCAGGGGGCCACGGGC----TGTG
s panTro5.chrX                      316544 36 + 155549662 -----CAGATTTTTGGTGATCCCAGGGGGCCACGGGG----TGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77102 36 -    177848 -----CAGATTTTTGGTGATCCCAGGGGGCCACGGGG----TGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225510 37 +    417917 -----CAGATTTTTGGTGATCCCAGGGGGCCACGGGG---TTGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290773 36 + 180051392 -----CAGATTTTTGGTGATCCCACGGGGCCGTGGGG----TGTG
i rheMac8.chr6                   C 0 I 2
s macFas5.chrUn_KE146020             40279 36 -     71016 -----CAGATTTTTGGTGATCCCAGGGGGCCGTGGGG----TGTG
i macFas5.chrUn_KE146020         C 0 I 2
s macNem1.NW_012017243v1            288493 36 +  25972781 -----CAGATTTTTGGTGATCCCAGGGGGCCGTGGGG----TGTG
i macNem1.NW_012017243v1         I 168 I 2
s cerAty1.NW_012001098v1            195123 36 -   1025902 -----CAGATTTTTGGTGATCCCAGGGGGCCGTGGGG----TGTG
i cerAty1.NW_012001098v1         C 0 I 558
s saiBol1.JH378345                  219618 34 +    465904 -----CAGATTTTTGGTGATCTCAGGGGGCCAAGGGG----TG--
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233458 37 +  11138919 CCCTCTAGATGTT------TCTGGGGGGGGCACAGGGGCATTG--
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I

a score=5184.000000
s hg38.chrX_KI270880v1_alt          161317 22 +    284869 CCTGGCATCTCTCTCATGAAA-C
s panTro5.chrX                      316580  6 + 155549662 CCTGG-----------------C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77138  6 -    177848 CCTGG-----------------C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225547  6 +    417917 CCTGG-----------------C
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290811 21 + 180051392 CCTGCCATCCCTGTCGCGAAA--
i rheMac8.chr6                   I 2 C 0
s macFas5.chrUn_KE146020             40317 21 -     71016 CCTGCCATCCCTGTCGCGAAA--
i macFas5.chrUn_KE146020         I 2 C 0
s macNem1.NW_012017243v1            288531 21 +  25972781 CCTGCCATCCCTGTCGCGAAA--
i macNem1.NW_012017243v1         I 2 C 0
s cerAty1.NW_012001098v1            195717 21 -   1025902 CCTGCCATCCCTGTCACGAAA--
i cerAty1.NW_012001098v1         I 558 C 0
s saiBol1.JH378345                  219652 22 +    465904 CCTGGTATCTCCATCCTGAAA-C
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233495 20 +  11138919 ---GGAATCCCCATCACTAAAGC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296213 293 +   1230721 I

a score=321145.000000
s hg38.chrX_KI270880v1_alt          161339 95 +    284869 ATCTCTTTTTCTTGTGATCATTTAAAA-TTCATCCTCGCTCCAAAGAAGG-TATCTGTGTAGCAGTGTTGCCTCC-GTGAGCCGTCCTGA---TTTTTTTT
s panTro5.chrX                      316586 97 + 155549662 ATCTCTTTTTCTTGTGATCATTTAAAA-TTCATCCTCGCTCCAAAGAAGA-TATCTGCGTAGCAG-GTTGCCTCC-GTGAGCCGTCCTGATTTTTTTTTTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77144 96 -    177848 ATCTCTTTTTCTTGTGATCATTTAAAA-TTCATCCTCACTCCAAAGAAGATTATCTGTGTAGCAGTGTTGCCTCC-ATGAGCCGTCCTGA---TTTTTTTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225553 95 +    417917 ATCTC-TTTTCTTGTGATCATTTAAAATTTCATCGTCACTCCAAAGAAG--TATCTGTGTAGCAGTGTTGCCTCC-GTGAGCCGTCCTGA--TTTTTTTTT
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290832 96 + 180051392 ATCTCTTCTTCTTGTGATCATTTAATA-TTCATCCTCGCTCCAAAGAAGATTATCTGTGTAGCGGTGATGCCTCC-GTGAACCGTCCTGA---TTTTTTTT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             40338 96 -     71016 ATCTCTTCTTCTTGTGATCATTTAATA-TTCATCCTCGCTCCAAAGAAGATTATCTGTGTAGCGGTGACGCCTCC-GTGAACCGTCCTGA---TTTTTTTT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            288552 96 +  25972781 ATCTCTTCTTCTTGTGATCATTTAATA-TTCATCCTCGCTCCAAAGAAGATTATCTGTGTAGCGGTGATGCCTCC-GTGAACCGTCCTGA---TTTTTTTT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            195738 96 -   1025902 ATCTCTTCTTCTTGTGATCATTTAATA-TTCATCCTCGCTCCAAAGACGATTATCTGTGTAGCGGCGATGCCTCC-GTGAACCGTCCTGA---tttttttt
i cerAty1.NW_012001098v1         C 0 I 1917
s colAng1.NW_012115411v1            296506 95 +   1230721 ATCTCTTCTTCTTGGGATCATTTCAAA-TTCACCCTCGCTCCAAAGAAGA-TATCTGTGTAGCAGCGGTGCCTCC-GTGAACCATCCTGA---TTTTTTTT
i colAng1.NW_012115411v1         I 293 C 0
s saiBol1.JH378345                  219674 95 +    465904 ATTGCCTTTTCTTGTGATCAGTTAAAA-TTCATCCTCGCTCCAAAGGAGA-AATTCATGCAGCAGCGATGACTCC-ATGAGCTGTCCTGA---TTTTTTTT
i saiBol1.JH378345               C 0 I 4
s otoGar3.GL873584                  233515 92 +  11138919 ATCCCATGGCTTTG---TTATTTAAAA-TTCCTGTCGACTCCGGAGAAGA-AATTTGTGTTCTGATTAGTCTGCCGGCCAGCCACGCTGA---TTGCTTT-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I

a score=4383.000000
s hg38.chrX_KI270880v1_alt          161434 2 +    284869 TT
s panTro5.chrX                      316683 2 + 155549662 TT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77240 2 -    177848 TT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225648 2 +    417917 TT
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290928 2 + 180051392 CT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             40434 2 -     71016 CT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            288648 2 +  25972781 CT
i macNem1.NW_012017243v1         C 0 C 0
s colAng1.NW_012115411v1            296601 2 +   1230721 TT
i colAng1.NW_012115411v1         C 0 I 7150
s saiBol1.JH378345                  219773 2 +    465904 TT
i saiBol1.JH378345               I 4 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233607 0 +  11138919 C
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I

a score=4195.000000
s hg38.chrX_KI270880v1_alt          161436 2 +    284869 CC
s panTro5.chrX                      316685 2 + 155549662 CC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77242 2 -    177848 CC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225650 2 +    417917 TC
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143290930 2 + 180051392 CC
i rheMac8.chr6                   C 0 I 3057
s macFas5.chrUn_KE146020             40436 2 -     71016 CC
i macFas5.chrUn_KE146020         C 0 I 3041
s macNem1.NW_012017243v1            288650 2 +  25972781 CC
i macNem1.NW_012017243v1         C 0 I 1692
s saiBol1.JH378345                  219775 2 +    465904 CT
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233607 1 +  11138919 -C
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I

a score=162225.000000
s hg38.chrX_KI270880v1_alt          161438 213 +    284869 GGTATTTCAAAGGGAGGTTAG--GGGATCGGGTTATTTTTGGTGAGAACAGCGGGAAACCAAGC---------------------CTTGACTTC---------------------------TCGAGTCCCTGGGGT---------GCAGGAGAGGGGTCTCTGAGGACCATGCT-GGGAAAATAACTCATCCCTCCTTTGGTCATCTTTGGAGATGAGCTGAAACCAGGCGGGGCTCTAGTCACTTATTTATCTGCTTCTTAAAttttat-----------------ttt
s panTro5.chrX                      316687 213 + 155549662 GGTATTTCAAAGGGAGGTTAG--GAGATCGGGTTATTTTTGGTGAGAACAGCGGGAAACCAAGC---------------------CTTGACTTC---------------------------TGGAGTCCCTGGGGT---------GCAGGAGAGGGGTCTCTGAGGACCACGGT-GGGAAAATAACTCATCCCTCCTTTGGTCATCTTTGGAGATGAGCTGAAACCAGGAGGGGCTCTAGTCACTTATTTATCTGTTTCTTAAAttttat-----------------ttt
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77244 213 -    177848 GGTATTTCAAAGGGAGGTTAG--GGGATCGGGTTATTTTTGGTGATAACAGCGGGAAACCAAGC---------------------CCTGACTTC---------------------------TGGAGTCCCTGTGGT---------GCAGGAGAGGGGTCTCTGAGGACCATGGT-GGGAAAATAACTCATCCCTCCTTTGGTCATCTTTGGAGATGAGCTGAAACCAGGAGGGGCTCTAGTCACTTATTTATCTGTTTCTTAAAttttat-----------------ttt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225652 210 +    417917 GGTATTTCAAA-GGAGGTTAG--GGGATC-GGTTATTTTTGGTGAGAACAGTGGGAAACCAAGC---------------------CCTGACTTC---------------------------TGGAGTCCCTG-GGT---------GCAGGAGAGGGGTCTCTGAGGACCATGGTGGGGAAAATAACTCATCCCTCCTTTGGTCATCTTTGGAGATGAGCTGAAACCAGGA-GGGCTCTAGTCACTTATTTATCTGTTTCTTAAAttttat-----------------tta
i gorGor5.CYUI01015925v1         C 0 C 0
s saiBol1.JH378345                  219777 284 +    465904 GGTATTTTAAAGGGAGGTTAG--ACGGTCGGGTTATTTTTGGTGAGAAGAACAGGAAACCAAGCCATCAAGTTTAGGGAAAGTTTCATGACTTT--GGTGAATTCCCAGAAAAGGTATGGATGGAGTCCCTGGGGTCCACAGGGAGCAGGAGAGCAGCTTCTGGACACCATAGT-GTGAAAATGACTCATCTGTCCTTTGGCCGTGTTTGGAGATGAGCTGAAACCAGGAGGATATCT-GTCACTTATTTACTCattttttaaaatttagatttaaattaagttaaatta
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  233608 238 +  11138919 GGTGTTTCAAAGGGAGGTCAGAAGGGGTCGAGTTA-TTTCGGAAAGAAAAGCGGGCAA-TGAGCAGCCAGTCCTGGGGAAAGCA-TCTTATTGCTTGTTGAACTGTCAGTGAAGCCTGGGACAGAGCCCCAGCAGG---------GCAGGGAATGGGC--CTGCAGACCAGATA-GGGCAAAGGACTTATCCTCC----------------AGGAAGGCCGGACCCAGGGAGGGCTCT-GTCACTTGTTTATTTGTTTTT---ACTTTAA-----------------TTT
i otoGar3.GL873584               C 0 I 15257
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I

a score=188503.000000
s hg38.chrX_KI270880v1_alt          161651 276 +    284869 a-tttatttattt-tttttgagacagagtcttgctctgtcacccaggctggagtgcaatggtgcgatcttggctcactgcaacctccgcctctcgggttcaagcgattctcctgcctcagcctcccgagtagctgggactgcaggcacccaccaccacgcccggctaattttttgtatttttagtagagacgggg-tttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccgcccgcctcggcctcctaaagtgctgggatgacaa
s panTro5.chrX                      316900 275 + 155549662 a-tttatttatttatttttgagacagagtcttgctctgtcacccaggctggagtgcaatggtgcgatctcggctcactgcaacctccgcctcccgggttcaagagattctcctgcctcagtctcttgagtagctgggattacaggtgcccaccaccatgcctgggtaa--ttttgtatttttagtagagatgcgg-tttcaccgtgttagccaggatggtctcggtctcctgacctc--gtgatccgcccgcctcggcctcctaaagtgctgggatgacaa
i panTro5.chrX                   C 0 I 113
s panPan2.chrUn_NW_014024190v1       77457 277 -    177848 attttatttattt-tttttgagacagagtcttgctctgtcacccaggctggagagcagcggtgcgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagttggtactacaggcacccaccaccatgcctagctaattttttgtatttttagtagagacgggg-tttcaccgtgttagccaggctggtctcagtctcctgaccgc--gtggtctgcccgcctcggcctcccaaagtgctgggatgacag
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            225862 272 +    417917 t-tttatttattt-tttttgagacagagtctcgctctgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcctgagtaagctggactacaggtgcccgccaccacgcctagctaa-tttttgtatttttagtaga-acgggg-tttcaccatg-tggccaggct-gtcttgaactcctgacctc--atgatctgcctgcctcggcctcccaaagtgctgggatcacag
i gorGor5.CYUI01015925v1         C 0 C 0
s saiBol1.JH378345                  220061 269 +    465904 a-tttatttatt--tattggagatggagtctcactccgtcacccaggctggagtgcagtggcgcgatctcggctcactgcacccttggcctcttcggttcaagggattctctggcctcagcctcctgaatagctgggattgcaggtgcctgacacctcacccagctga-tttttgtatttttagtagagacggggttttcaccatattggtcaggctggtcttcaacccctgaccttaggcgatccaccagcctagacctcccaaagtgctgg--------
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I

a score=8869.000000
s hg38.chrX_KI270880v1_alt          161927 13 +    284869 gcgtgagccaccg
s panTro5.chrX                      317288 13 + 155549662 gcatgagccaccg
i panTro5.chrX                   I 113 C 0
s panPan2.chrUn_NW_014024190v1       77734 13 -    177848 gcgtgacccaccg
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            226134 13 +    417917 gcgtgagccaccg
i gorGor5.CYUI01015925v1         C 0 I 7072
s saiBol1.JH378345                  220330  9 +    465904 ----gaGCCACCA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I

a score=-5672.000000
s hg38.chrX_KI270880v1_alt          161940  9 +    284869 tgcccggc-------------------------------------------------------------------------------c
s panTro5.chrX                      317301  9 + 155549662 cgcccggc-------------------------------------------------------------------------------c
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77747 88 -    177848 cgcccggccCAAAGATGCCTTTTAAGAAACAAGATAtttgggaggctgaagagggtggatggcctgaggtcaggagttcgagaccagc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s saiBol1.JH378345                  220339  8 +    465904 CACCCAAC--------------------------------------------------------------------------------
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I
e gorGor5.CYUI01015925v1            226147 7072 +    417917 I

a score=9281.000000
s hg38.chrX_KI270880v1_alt          161949 19 +    284869 CAAAGATGCCTTTTAATAA
s panTro5.chrX                      317310 19 + 155549662 CAAAGATGCCTTTTAAGAA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77835 19 -    177848 cAAAGATGCCTTTTAAGAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            233219 16 +    417917 cAAAGATGCCTTTT---AA
i gorGor5.CYUI01015925v1         I 7072 C 0
s saiBol1.JH378345                  220347 13 +    465904 ------TATTTTTTAAAAA
i saiBol1.JH378345               C 0 I 7134
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I

a score=260215.000000
s hg38.chrX_KI270880v1_alt          161968 495 +    284869 ACAAGGTAtttgggaggctgaagagggtggatgacctgaggtcaggagttcgagaccagcctgggatgacaggcgtgagccaccgcgcccggcctcatgcctcctgtttttaggacatacagggtaacttcctgcgtggctatgacatctgtaaatggtcctggtgctggtgggagtgtcttttagcagcaaatgaattacagttagtgtaaggtacaattagtgcggtgaggacaacctgaggtcactttcgttgccatcttgg-ttttggcgggatttggccggcttcttcactgcgagctgttttatcagcaactctttatgacctctgtcttgtgccaacctcctatctcaacctgtaggttagaatgcctTAacctggggaggccgaggcaggtggatcacctgaggttgggagttccagatcagcctgaccaacatagcgagaccccgtctctactaaaaatacaaaaTTAgccaggcgtggaggtgcat
s panTro5.chrX                      317329 495 + 155549662 ACAAGATAtttgggaggctgaagagggtggatggcctgaggtcaggagttcgagaccagcctgggatgacaggcgtgagccaccgcgcccggccTCATGcctcctgtttttaggacatacagggtaacttcctgcatggctatgacatctgtaaacggtcctggtgctggtgggagtgtcttttagcagcaaatgaattacagtcagtgtaaggtacaattagtgcagtgaggacaacctgaggtcacttttgttgccatcttgg-ttttggcgggatttggccggcttcttcactgtgagctgttttatcagcaactctttatgatctgtgtcttgtgccaacctcctatctcaacctgtaggttagaatgcctTAacctggggaggctgaggcaggtggatcacctgaggttgggagttcgagatcagcctgaccaacatggcgaaaccccgtctttactaaaaatacaaaattagccaggcgtggaggtgcat
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       77854 495 -    177848 ACAAGGTAtttgggaggctgaagagggtggatgacctgaggtcaggagttcgagaccagcctgggatgataggcgtgagccaccgcgcccggccTCATGcctcctgtttttaggacatacagggtaacttcctgcgtggctatgacatctgtaaacggtcctggtgctggtgggagtgtcttttagcagcaaatgaattacaattagtgtaaggtacaattagtgcggtgaggacaacctgaggtcactttcgttgccatcttggtttttggcgggatttcgccagcttcttcactgccagctgttttatcagcaactctttatgacctgtgtcttgtgccaacctcctctctcatcctgtaggttagaatacctTAacctggggaggccgaggcaggtggatcacctgaggttgggagttcgagatcagccttaccaacatggtgaaaccccgtctgtactaaaaatac-aaattagcaggacgtggtggctcat
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            233235 495 +    417917 ACAAGATAtttgggaggctgaagagggtggatgacctgaggtcaggagttcgagaccagcctggGATAACAGGCGTGAGCCACCGTGCCCGGCCTCATGcctcctgtgtttaggacatacagggtaacttcctgcatggctatgacatctgtaaagggtcctggtgctggtgggagtgtcttttagcagcaaatgaattacaattagtgtaaggtacaattagtgcagtgaggacaacctgaggtcactttcgttgccatcttga-ttttggcgggatttggccggcttcctcactgcaagctgttttatcagcaactctttatgacctctgtcttgtgccaacctcctatctcaacctgtaggttagaatgcctTAacctggggaggccgaggcaggtggatcacctgaggtcgggagttcgagatcagcctgaccaacatagcgagaccccgtctgtactaaaaatacaaaaTTAgcaggacgtggtggcttat
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I
e macFas5.chrUn_KE146020             40438 3041 -     71016 I

a score=12834.000000
s hg38.chrX_KI270880v1_alt          162463 21 +    284869 gcctgtaatcccagaactttc
s panTro5.chrX                      317824 21 + 155549662 gcctgtaatcccagaactttc
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       78349 21 -    177848 gcctgtaatcccagcactttc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            233730 21 +    417917 gcctgtaatcccagaactttc
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             43479 21 -     71016 gcttggaatgccttaatcctg
i macFas5.chrUn_KE146020         I 3041 C 0
e manLeu1.NW_012108508v1            135740 3413 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            195834 1917 -   1025902 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e rheMac8.chr6                   143290932 3057 + 180051392 I
e macNem1.NW_012017243v1            288652 1692 +  25972781 I

a score=37168.000000
s hg38.chrX_KI270880v1_alt          162484 12 +    284869 ggaggccaaggc
s panTro5.chrX                      317845 12 + 155549662 ggaggccaaggc
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       78370 12 -    177848 ggaggccaaggc
i panPan2.chrUn_NW_014024190v1   C 0 I 5617
s gorGor5.CYUI01015925v1            233751 12 +    417917 ggaggccaaggc
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143293989 12 + 180051392 ggaggctgaggc
i rheMac8.chr6                   I 3057 C 0
s macFas5.chrUn_KE146020             43500 12 -     71016 ggaggctgaggc
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290344 12 +  25972781 ggaggctgaggc
i macNem1.NW_012017243v1         I 1692 C 0
s cerAty1.NW_012001098v1            197751 12 -   1025902 ggaggctgaggc
i cerAty1.NW_012001098v1         I 1917 C 0
s manLeu1.NW_012108508v1            139153 12 -    350446 ggaggctgaggc
i manLeu1.NW_012108508v1         I 3413 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I

a score=1093.000000
s hg38.chrX_KI270880v1_alt          162496 1 +    284869 g
s panTro5.chrX                      317857 1 + 155549662 a
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            233763 1 +    417917 g
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294001 1 + 180051392 a
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             43512 1 -     71016 a
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290356 1 +  25972781 a
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            197763 1 -   1025902 a
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            139165 1 -    350446 a
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e colAng1.NW_012115411v1            296603 7150 +   1230721 I
e panPan2.chrUn_NW_014024190v1       78382 5617 -    177848 I

a score=37301.000000
s hg38.chrX_KI270880v1_alt          162497 12 +    284869 ggcggatcacct
s panTro5.chrX                      317858 12 + 155549662 ggcggatcacct
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            233764 12 +    417917 ggcggatcacct
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294002 12 + 180051392 ggcggatcccct
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             43513 12 -     71016 ggcggatcccct
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290357 12 +  25972781 ggcggatcccct
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            197764 12 -   1025902 ggcggatcccct
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            139166 12 -    350446 ggcggatcccct
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            303753 12 +   1230721 ggcagatcccct
i colAng1.NW_012115411v1         I 7150 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e panPan2.chrUn_NW_014024190v1       78382 5617 -    177848 I

a score=652297.000000
s hg38.chrX_KI270880v1_alt          162509 198 +    284869 gaggtcgggagtttgagaccagcctga-ccaacatggcgaaaccccgtctctactaaaaatacaaaaTTAgccgggcgtggaggctcgcacctgcaatcccagaactttgggaggccaaggtgggtggatcacgaggtcaggagttcaagaccagcctggccagcacggtgaaaccccgtctgtaataaaaatacaaaa
s panTro5.chrX                      317870 198 + 155549662 gaggtcgggagtttgagaccaacctga-ccaacatggcgaaaccccgtctctactaaaaatacaaaaTTAgccgggcgtggaggcgcgcacctgcaatcccagaactttgggaggccaaggtgggtggatcacgaggtcaggagttcaagaccagcctggccagcatggagaaaccccgtctgtaataaaaatacaaaa
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       83999 198 -    177848 gaggtcaggagttcaagaccagcctga-ccaacatggaggaaccccgtctctactaaaaatacaaaaTTAgccaggcgtggaggcgcacgcctgtaatcccagaactttgggaggccaaggtgggtggatcacgaggtcaggagttcgagaccagcctggccagcatggtgaaaccctgtctgtaataaaaatacaaaa
i panPan2.chrUn_NW_014024190v1   I 5617 C 0
s gorGor5.CYUI01015925v1            233776 198 +    417917 gaggtcgggagttcgagaccagcctga-ccaacatggagaaaccctgtctctgctaaaaatacaaaaTTAgccaggcgtggaggcgcacgcctataatcccagaactttgggaggccaaggtgggtggatcacgaagtcaggagttcaagaccagcctggccagcacggtgaaaccccatctgtaataaaaatacaaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294014 183 + 180051392 gaggtcgtgagttcgagaccagcctga-ccaacgtggagaaatcccatctctactaaaaatacaaagttaccagggtgtgg-----------tgtaattccagcacttcgggaggccaaggtggatg----acgatgtcaggagttcaagaccagcctggccagcaaggtgaaagcccgtctctactaaaaatacaata
i rheMac8.chr6                   C 0 I 9
s macFas5.chrUn_KE146020             43525 183 -     71016 gaggtcgtgagttcgagaccagcctga-ccaacgtggagaaatcccatctctactaaaaatacaaagttaccagggtgtgg-----------tgtaattccagcacttcgggaggccaaggtggatg----acgatgtcaggagttcaagaccagcctggccagcaaggtgaaagcccgtctctactaaaaatacaata
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290369 183 +  25972781 gaggtcgtgagttcgagaccagcctga-ccaacgtggagaaatcccatctctactaaaaatacaaagttaccagggtgtgg-----------tgtaattccagcacttcgggaggccaaggtggatg----acgatgtcaggagttcaagaccagcctggccagcaaggtgaaagcccgtctctactaaaaatacaata
i macNem1.NW_012017243v1         C 0 I 9
s cerAty1.NW_012001098v1            197776 184 -   1025902 gaggttgtgagttcgagaccagcctgacccaacgtggagaaatcccatctctactaaaaatacaaagttaccagggtgtgg-----------tgtaatcccagcacttcgggaggtcaaggtggatg----acgaggtcaggagttcaagaccagcctggccagcaaggtgaaagcccatctctactaaaaatacaata
i cerAty1.NW_012001098v1         C 0 I 9
s manLeu1.NW_012108508v1            139178 183 -    350446 gaggtcgtgagttcgagaccagcctga-ccaacgtggagaaatcccatctctactaaaaatacaaagttaccagggtgcgg-----------tgtaatcccagcacttcgggaggccaaggtggatg----acgaggtcaggagttcaagaccagcctggccagcaaggtgaaagcccatctctactaaaaatacaata
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            303765 183 +   1230721 gaggtcgtgagttcgagaccagcctga-ccaacatggagaaatcccgtctctactaaaaatacaaagttaccagggtgtgg-----------tgtaattccagcactttgggaggccaaggtggatc----acgaggtcaggagttcaagaccagcctggccagcaaggtgaaagcccatctctactaaaaatacaaaa
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I

a score=1624.000000
s hg38.chrX_KI270880v1_alt          162707 12 +    284869 attagccggg--cg
s panTro5.chrX                      318068 12 + 155549662 attagccggg--cg
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84197 11 -    177848 attagccagg--c-
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            233974 11 +    417917 attagccggg--c-
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             43708  9 -     71016 -ttagtgcgg----
i macFas5.chrUn_KE146020         C 0 C 0
s manLeu1.NW_012108508v1            139361  9 -    350446 -ttagtgcag----
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            303948 11 +   1230721 -ttagcagggca--
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I
e cerAty1.NW_012001098v1            197960  9 -   1025902 I
e rheMac8.chr6                   143294197  9 + 180051392 I
e macNem1.NW_012017243v1            290552  9 +  25972781 I

a score=496000.000000
s hg38.chrX_KI270880v1_alt          162719 141 +    284869 tgtggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggagcttgcagtggagctgagattgcaccactgcactctagcctgggtgagagagcgagactctgtctt
s panTro5.chrX                      318080 141 + 155549662 tgtggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggagcttgcagtggagctgagattgcaccactgcactctagcctgggtgagagagcgagactctgtctt
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84208 140 -    177848 -gtggtggcacgtgcctgtcatcccagctactcaggaggccgaggcaggagaattgcttgaacccgggaggtggaggctgcagtggagccgagattgcgccactgcactccagcctgggtgacagagcgagactctgtctt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            233985 139 +    417917 -gtggtggcacgtgcctgttatcccagctactcaggaggccgaagcaggagaatcgcttgaacccgggaggtggagcttgcagt-gagccgagactgcaccactgcactccagcctgggtgagagagtgagactctgtctt
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294206 140 + 180051392 tgtgatggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactagggaggcagaggttgtact-gagctgagatcgtgccattgcactccagcctgggcaactgagcaagactctgtctc
i rheMac8.chr6                   I 9 C 0
s macFas5.chrUn_KE146020             43717 140 -     71016 tgtgatggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactagggaggcagaggttgtact-gagctgagatcgtgccattgcactccagcctgggcaactgagcaagactctgtctc
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290561 140 +  25972781 tgtgatggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactagggaggcagaggttgtact-gagctgagatcgtgccattgcactccagcctgggcaactgagcaagactctgtctc
i macNem1.NW_012017243v1         I 9 C 0
s cerAty1.NW_012001098v1            197969 140 -   1025902 tgtgatggcaggtgcctgtaattccagctactcaggaggctgaggcaggagaatcgcttgaactagggaggcggaggttgtact-gaactgagatcgtgccattgcactccagcctgggcaactgagcaagactctgtctc
i cerAty1.NW_012001098v1         I 9 I 3
s manLeu1.NW_012108508v1            139370 140 -    350446 tgtgatggcaggtgcctgtaattccagctactcaggaggctgaggcaggagaatcgcttgaactagggaggcagaggttgtact-gagctgagatcatgccattgcactccagcctgggcaactgagcaagactccgtctc
i manLeu1.NW_012108508v1         C 0 I 5
s colAng1.NW_012115411v1            303959 138 +   1230721 --cggtggcaggtgcctgtaatcccagctattcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagt-gagctgagattgtgccactgcactccagcctgggcaactgagcaagactctatctc
i colAng1.NW_012115411v1         C 0 I 5
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I
e chlSab2.chrUn_KE147541v1          166228 2287 -    811265 I

a score=292726.000000
s hg38.chrX_KI270880v1_alt          162860 83 +    284869 aaaaaaaagaaaaaaaaaaa--TCTGaaccttctgagaatgcagcccagaaggtctcagcctcattttacccagcccctgttgaa
s panTro5.chrX                      318221 85 + 155549662 aaaaaaaagaaaaaaaaaaaaaCCTGaaccttctgagaatgcagcccagaaggtctcagcctcattttacccagcccctgttgaa
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84348 81 -    177848 aaaaaaaagaaaaaaaaC----Ccttaaccttctgagaatgcagcccagaaggtctcagcctcattttacccagcccctgttgaa
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234124 72 +    417917 aaaaaaaagaaagaaaaaaaC-ccttaaccttctgagaatgcagcccagaaggtctcagcctcattttaccca------------
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294346 77 + 180051392 aaaaaaaaaaaaaaaaaaag--ccttagcattctgagaaggtagcccagaaggtctcagcttcattttaccc------tgttcaa
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             43857 77 -     71016 aaaaaaaaaaaaaaaaaaaG--GCTTAGCATtctgagaaggtagcccagaaggtctcagcttcattttaccc------tgttcaa
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290701 75 +  25972781 --aaaaaaaaaaaaaaaaaG--gcttagcattctgagaaggtagcccagaaggtctcagcttcattttaccc------tgttcaa
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            198112 77 -   1025902 aaaaaaaaaaaaaaaaaaag--ccttagcattctgagaatgtagcccagaaggtctcagcttcattttaccc------tgttcaa
i cerAty1.NW_012001098v1         I 3 C 0
s chlSab2.chrUn_KE147541v1          168515 77 -    811265 aaaaaaaaaaaaaaaaaaag--ccttaacattctgagagtgtagcccagaagttctcagcttcattttaccc------tgttcca
i chlSab2.chrUn_KE147541v1       I 2287 C 0
s manLeu1.NW_012108508v1            139515 77 -    350446 aaaaaaaaaagaaaaaaaag--ccttagcattctgagaatgtagcccagaaggtctcagcttcattttatac------tgttcaa
i manLeu1.NW_012108508v1         I 5 C 0
s colAng1.NW_012115411v1            304102 77 +   1230721 acaacaacaacaaaaaaaag--ccttaaccttctgagaatgcagcccagaaggtctcagcttcattttaccc------tgttcaa
i colAng1.NW_012115411v1         I 5 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  233846 15257 +  11138919 I

a score=1005835.000000
s hg38.chrX_KI270880v1_alt          162943 239 +    284869 agtggagttgctttacttccaacacctctgacaCTGCTGTTTGGGAATCTTCCGAATGATTAGAGAGTTATAGAAAGTTAAGGCGCCTTGATCCGGAGAAGCTG--GTGCCGTCTCTCTCAT-GGCGTC----------TGTGGGACAATTGTCCGGGAAGAGGGC--GGCTCTGGGCACTCCGGGGGGCTGGAGGTGGGAGC-TTCGTATCCTGGAGGTGGCTGTGTGTTTTGGAGACTCATTGTACCACATAA
s panTro5.chrX                      318306 239 + 155549662 agtggagttgctttacttccaacacctctgacaCTGCTGTTTGGGAATCTTCCGAATGATTAGAGAGTTACAGAAAGTTAAGGCGCCTTGATCGGGAGAAGCTG--GTGCCGTCTCTCTCAC-GGCGTC----------TGTGGGACAATTGTCCGGGAAGAGGGC--GGCTCTGGGCACTCCGGGGGGCTGGGGGTGGGAGC-TTCGTATCCTGGAGATGGCTGTGTGTTTTGGAGACTCATTGTACCACATAA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84429 239 -    177848 agtggagttgctttagttccaacacctctgacaCTGCTGTTTGGGAATCTTCCGAATGATTAGAGAGTTACAGAAAGTGAAGGCGCCTTGATCGGGAGAAGGTG--GTGCCGTCTCTCTCAC-GGCGTC----------TGTGGGACAATTGTCCGGGAAGAGGGC--GGCTCTGGGCACTCCGGGGGGCTGGAGGTGGGAGC-TTCGCATCCTGGAGGTGGCTATGTGTTTTGGAGACTCATTGTACCACATAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234196 182 +    417917 ---------------------------------------------------------gATTAGAGAGTTACAGAAAGTTAAGGCGCCTTGATCGGGAGAAGCTG--GTGCCGTCTCTCTCAC-GGCGTC----------TGTGGGACAATTGTCCGGGAAGAGGGC--GGCTCTGGGCACTCCAGGGGGCTGGGGGTGGGAAC-TTCGTATCCTGGAGGTGGCTGTGTGTTTTGGAGACTCATTGTACCACATAA
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294423 238 + 180051392 gggggagttgctctgcttccaacacctttgacaAGGTTGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGTTAAGGCGCTCGGATC---AGAAGCCC--GGGCCGTCTCTCTCACGGGCGTC----------TGTGGGACGATTGTCCAGGGAGGGGGA--GGCTCTGGGCACTTCAGGAGGCTGGAGGTGGGAGCTTTCCTATCCTGGAGGTGGCTCTGTGTTTTGGAGACTCGTTGTAGCACATAA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             43934 238 -     71016 gggggagttgctctgcttccaacacctttgacaAGGTTGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGTTAAGGCGCTCGGATC---AGAAGCCC--GGGCCGTCTCTCTCACGGGCGTC----------TGTGGGACGATTGTCCAGGGAGGGGGA--GGCTCTGGGCACTTCAGGAGGCTGGAGGTGGGAGCTTTCCTATCCTGGAGGTGGCTCTGTGTTTTGGAGACTCGTTGTACCACATAA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            290776 238 +  25972781 gggggagttgctctgcttccaacacctttgacaAGGTTGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGTTAAGGCGCTCGGATC---AGAAGCCC--GGGCCGTCTCTCTCACGGGCGTC----------TGTGGGACGATTGTCCAGGGAGGGGGA--GGCTCTGGGCACTTCAGGAGGCTGGAGGTGGGAGCTTTCCTATCCTGGAGGTGGCTCTGTGTTTTGGAGACTCGTTGTACCACATAA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            198189 238 -   1025902 gggggagttcctctggctccaacacctttgacaCAGTTGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGTTAAGGCGCCCGGATC---AGAAGCCC--GGGCCGTCTCTCTCAGGGGCGCC----------TGTCGGACGATTGTCCAGGAAGGGGGA--GGCTCTGGGCACTTCAGGAGGCTGGAGGTGGGAGCTTTCCTATCCTGGAGGTGGCTCTGTGTTTTGGAGACTCGTTGTACCACATAA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          168592 241 -    811265 gggggagttgctctggctccaacacctttgacaCTGTGGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGCTAAGGCGCCCGGATCGGGAGAAGCCT--GTGCCGTCTCTCTCACGGGCGTC----------TGTGGGACGATTGTCTGGGAACGGGGA--GGCTCTGGGCACCTCAGGGAGCTGGAGGTGGGAGCTTTCGTATCCTGGAGGTGGCTCTGTGTTTTGGAGACTCGTAGTACCACATAA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            139592 238 -    350446 gggggagttcctctggctccaacacctttgacaCGGTTGTTTGGGAATCTTCCGAATGATGAGGGAGTGACAGAAAGTTAAGGCGCCCGGATC---AGAAGCCC--GGGCCGTCTCTCTCAGGGGCGTC----------TGTGGGATGATTGTCCGGGAAGGGGGA--GGCTCTGGGCACTTCAGGAGGCTGGAGGTGGGAGCTTTCCTATCCTGGAGGTGCTTCTGTGTTTTGGAGACTCGTTGTACCACATAA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            304179 241 +   1230721 gggggagttgctctggctccaacacctttgacaCTGTGGTTTGGGAATCCTCTGAATGATTAGAGAGTGACAGAAAGTTAAGGCGCCTTGATCAGGAGAAGCCC--GTGCCGTCTCTCTCACAGGTGTC----------TCTGGGACGATTGTCCGGGAAGGGGGC--GGCTCTGGGCACTTCAGGGAGCTGGAGGTGGGAGCTTTCCTACCCTGGAGGTGGCTCTGTGTTGTGGAGACTCATTGTACCACATAA
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  249103 246 +  11138919 AGTGGGCTGGTTCTGCTT--AGCA-----GATGCTGGTGTTTGGGAATCTTCCCACTTGTGAGAGATTTGTAGAAAGTAAAGGAGTTTTTATTGAGGCAAACCCAAGTACCTTCTCTCTCTC-TGTCTCTCACTCGTGTTGCTGGATGATT-CCAAGTGAGAATAATTGATTCTGGGTCCTCCAAACGGCTGGAGCTGGGCACTTTTCCATCCTGGAGATCCTGGTGTATTTTGCAGACTCATCACAGTGTGGGA
i otoGar3.GL873584               I 15257 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I

a score=124998.000000
s hg38.chrX_KI270880v1_alt          163182 25 +    284869 AACACCCTTAAATATCCTTGCCTTC
s panTro5.chrX                      318545 25 + 155549662 AACACCCTTAAATATCCTTGCCTTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84668 25 -    177848 AACACCCTTAAATATCCTTGCCTTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234378 25 +    417917 AACACCCTTAAATATCCTTGCCTTC
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294661 25 + 180051392 AACATCCTTAAATATCCTTGCCTTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             44172 25 -     71016 AACATCCTTAAATATCCTTGCCTTC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            291014 25 +  25972781 AACATCCTTAAATATCCTTGCCTTC
i macNem1.NW_012017243v1         C 0 I 3315
s cerAty1.NW_012001098v1            198427 25 -   1025902 AACATCCTTAAATATCCTTGCCTTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          168833 25 -    811265 AACATCCTTAAATATCCTTGCCTTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            139830 25 -    350446 AACGTCCTTAAATATCCTTGCCTTC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            304420 25 +   1230721 AACATCCTTAAATATCCTTGCCTTC
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349  0 +  11138919 C

a score=142829.000000
s hg38.chrX_KI270880v1_alt          163207 44 +    284869 CCCTGCtattttgtataataataatataattatattttataatt
s panTro5.chrX                      318570 44 + 155549662 CCCTGCTATTTTGTATAATAATAATATAATTATATTTTATAATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84693 44 -    177848 CCCTGCTATTTTGTataataataatataattatgttttataatt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234403 44 +    417917 CCCTGCTATTTTGTATAATAATAATATGATTATATTTTataatt
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294686 44 + 180051392 TGCCGCTGTTTCATATAATAATAGTATAATGATATCTTATAATT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             44197 44 -     71016 TGCCGCTGTTTCATATAATAATAGTATAATGATATCTTATAATT
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            198452 44 -   1025902 CGCCGCTGTTTCGTATAATAATAGTATAATGATATCTTATAGTT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          168858 44 -    811265 CGCCACTGTTACGTGTAATAATAGTATAATGATATCTTATAATT
i chlSab2.chrUn_KE147541v1       C 0 T 10233
s manLeu1.NW_012108508v1            139855 44 -    350446 CACCGCTGTTTCGTGTAATAATAGTATAATGATATCTTATAGTT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            304445 44 +   1230721 CACCGCTGTTTTGTATAATAATAGTATAATGATACCTTATAATT
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349  0 +  11138919 C
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=2548.000000
s hg38.chrX_KI270880v1_alt          163251 1 +    284869 a
s panTro5.chrX                      318614 1 + 155549662 A
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       84737 1 -    177848 a
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234447 1 +    417917 a
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143294730 1 + 180051392 A
i rheMac8.chr6                   C 0 I 1634
s cerAty1.NW_012001098v1            198496 1 -   1025902 A
i cerAty1.NW_012001098v1         C 0 I 5131
s manLeu1.NW_012108508v1            139899 1 -    350446 A
i manLeu1.NW_012108508v1         C 0 I 3495
s colAng1.NW_012115411v1            304489 1 +   1230721 A
i colAng1.NW_012115411v1         C 0 I 1181
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349 0 +  11138919 C
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e macFas5.chrUn_KE146020             44241 0 -     71016 C

a score=892250.000000
s hg38.chrX_KI270880v1_alt          163252 1463 +    284869 ataaaat------attattttataataat-----aaatact---------attttataa-------------taataaaatattgctttataata------------aataaaata------------------------------------------------ttttaataattaataaaatattatttttaataattaataaaataattgta---taaatataacgtataacaaaat-attctatagtaataaaataattatataat-aatataat---taataaaataa-tttataata-------aatttt----ataaattttat----aat-aaataattttataat--------------------aaatataacttgtaataaa--aattccataataattaataaaataattatgtaataa------------------------tataattaataaaataattttat----aatataatttgtaataaa--aattctataa----taataaaataatt-----ata---tattatgtgatatt-actacaataa-taattatattaatatataattatgtatatatatgttttttgagacggagtttcgctcttgttgcccaggttggagtgcaggggagcgatctcagctcacc-acaacctctgcttcccgggttcaa-gcgattctcctgcctcagcctccgg-agtagctgggatgacaggcatgcgccatcacacccggctaattttgtatttttagtagagacagagtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcctgcctcagcctcccaaagtgctgagattacaggtgttagccactgcgtttggccaatat---ataa---taataatcgcatattattaatt-aatatatt-ataattaatatatt-atat-------ataat--a----taattacatatttt-actatgttaatatataatataaaacattatatgattaatatg----taattatatta--a------tatattaatatatttattatattttatataacatttacattatattat-ataacatttatgtatt--------gtatttaatatata---atgatatataata-tttaatacataataatatata-----tttatgtattat------------attat-acattataatatggt----------atctattttataatatagtagtaataatatactccctgggaagt---ataatactaATGATTATTATTATTAAgagacagggtcttgc---tctattgcccaggctggagtgcagtggcaggatcatag-ctcactgcagcctcaac-ctctcaggctcaagcaatcctcccgttttagcctcctgagtcactgggactaccggtgtacaccaccatgcccagctaattttttaattttttgcctagaaggggagtctcactatgttgcctggcctggttgggaacccctaggctcaagcactcttcccagcttccaaagtgctgtggtgacagctgtgagccaccgtgcccggccAGG------------TTGGACAAGTGCTAACATACTGTCCATAACATAAGCTGTATGCCGGATGCATACGGCCGGCCTATAG-TTTCTGCAAATCCAGAAAAGCTTACTGCAACTGCAgaaagaaaaaaaaaagaaagagagaaagagag
s panTro5.chrX                      318615 1502 + 155549662 ATAAAA---------TATTTTATAATAATTAATAAAATACT---------ATTTTGTAA-------------TAATAAAATATTGCTTTATAATAA---------TTAATAAAATA------------------TTTTAATTA-AAAATATTAT----------TTTTaataattaataaaatat--tttataataattaataaaataattgta---taaatataacgtataacaaaat-attctataataataaaataattat---at-aatataat---taataaaataa-tttataata-------aatttt----ataaattttgt----aat-aaataattttataat--------------------aaatataatttgtaataaa--aattccataataattaataaaataattatg---taa------------------------tataattaataaaataattttataataaatataatttgtaataaa--aattctataataattaataaaataatt-----aTA---TATTATGTGATGTT-ACTACAATAA-TAATTATATTAATATATAATTATGTATATATATGttttttgagacggagtttcgctcttgttgcccaggttggagtgcaggggagcgatctcagctcacc-acaacctctgcttcccaggttcaa-gcgattctcctgcctcagcctccgg-agtagctgggatgacaggcaggcgccatcacacccggctaattttgtatttttggtagagacagggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgagattacaggcattagccactgcgtttggccAATATATAATAA---TAATAATCGCATATT----ATT-AATATATT-ATAATTAATATATT-ATAT-------ATAAT--A----TAAGTACATATTTT-ACTATGTTAATATATAATATAAAAC---ATATGATTAATATGTAATTAATTATATTAACA------TATATTAATATATTTATTATATTTTATATAACATTTACATTATATTAT-ATAACATTTATATATTATAATATGGTATTTAATATATAATGATGATATATAATA-TTTAATACATAATAATATATA-----TTTATGTATTAT----------ACATTAT-ACATTATAATATGGT----------ATCTATTTTATAATATAGTAGTAACAATATACTCCCTGGGAAGT---ATAATAATAATAATTATTATTATTAAgagacagggtcttgc---tctatcgcccaggctggagtgcagtggcaggatcatag-ctcactgcagcctcaac-ctctcaggctcaagcaatcctcccattttagcctcctgagtcactgagactactggtgtacaccaccatgcccagctaattttttaattttttgcatagaaggggagtctcactatgttgcccagcctggtcgggaacccctaggctcaagcactcttcccagcttccaaagtgctatggtgacaggtgtgagccaccatgcccggccAGG------------TTGGACAAGTACTAACATACTGTCCATAACATAAGCTGTATGCTGGATGCATATGGCCGGCCTATAG-TTTCTGCAAATCCAGAAAAGCTTACTGCAACTGCagaaagaaaaaaaaaagaaagagagagagGGAG
i panTro5.chrX                   C 0 I 375
s panPan2.chrUn_NW_014024190v1       84738 1531 -    177848 ataaaat------attgttttataataattaataaaacatt---------gttttataataa---------ttaataaaatatt--ttaataatt------------aataaaata--------------ttatttttaataataaaatattat----------tttaaataattgataaaatattattcttaataattaataaaataattcta---taa--atgacatataacaaaat-atcctataataataaaataattat---at-aatataat---taataaaataattttatgata-------aattttataaataaattttataataaat-aaataattttataat--------------------aaatataatttgtaacaaa--attcc----ataattaataaaataattatataataa------------------------tataattaataaaataattttgt----aatataatttgtaataaa--aattctataa---ttaataaaataattatataata---tattatgtgatatt-actacaataa-taattatattaatatataattatgtatatacacgttttttgagacggagtttcgctcttgttgcccaggttggagtgcagggaagcgatcccagctcacc-acaacctctgcttcccgggttcaa-gcgattctcctgcctcagcctccgg-agtagctgggatgacaggcatgcgccatcactcccggctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcctgcctcagcctcccaaagtgctgagattacaggcgtgagccactgcgtttggccaatatataataa---taataatcgcatattattaatt-aatatatt-ataattaata---t-atac-------ataat--a----taattacatatttt-actatgttaatatataatataaaagattatatgattaatata----taattatattattaatatattatattaatatatttattatattttatataacatttacattatattat-ataacatttatgtattataatatagtatttaatatataatgatgatatataata-tttaatacataataatatata-----tttatatattataatat--tatatattat-acattataatatggt----------atatattttataatatagtagtaataatatattccctgcgaagtataataataataataattattattatTAAgagacagggtcttgc---tctattgcccaggctggagtgcagtggcaggatcatag-ctcactgcagcctcaac-ctctcgggctcaagcaatcctcccattttagcctcctgagtcactgggactaccggtgtacacgaccatgcccagctaattttttaattttttgcatagaaggcgagtctcactatgttgcccagcctggtcgggaacccctaggctcaagcactcctcccagcttccaaaatgctgtggtgacaggtgtgagccaccatgcccggccAGG------------TTGGACAAGTACTAACATACTGTCCACAACATAAGCTGTATGCCGGATGCATGCAGCCGGCCTATAG-TTTCTGCAAATCCAGAAAAGCTTACTGCAACTGCagaaagaaaaaaaaaag-aagagagaaagagag
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            234448 1452 +    417917 ataaaa---------tattttataataat-------------------------------------------taataaaatatt--ttaataatt------------aataaaata----------------------------------ttat----------ttttaataattaataaaatat--tttataataattaataaaataattgta---taaatataacgtataacaaaat-attcta---taacaaaataattatataat-aatataat---taataaaataa-tttataata-------aattttataaataaattttat----aac-aaataattttataat---------------------aatataatttgtaataaa--aattccataataataattaaaataattatgtaataa------------------------tataattaataaaataattttat----aatataatttgtaataaa--aattctataataattaataaaataatt-----aTA---TATTATGTGATATTAACTACAATAATTAATTATATTAATATATAATTATGTATATATATGttttttagactgagaatttcctcttgttgcccaggtggaagtgcaggggagtg--ttcagctcaccaacaacctctgcttcccgggttcaacgcgattctcctgcctcagcctccggtagtagctgggatgacaggcaggcgccatcacacccggctaattttgtatttttagtagagacagggtttctccatgttcgtca-gccggtcttgaactcccgacctcagatgatctgcctgcctcagcctcccaaagtgctgagattacaggcgtgagccactgcgtttggccAATAT---ATAA---TAATAATAGCACATTATTAATTAAATAGATTCATAATTAATATATT-ATATTAACTAAATAATTCA----CAAGTA-ATATTTTCACTTTTTAAATATATAATATTAAA----ACATAGATTATATATTAATTACTATATTATTA----AATATATTAATATATTTTTTA----TTTTATAAACGTTACATTATATTATAATAACA-TTATGTATTACTAAATAGTA-TTAATATATA---ATGATATATAATATTTTAATACATAATAATATATA------TTATGTATTAT----------ATATTATAAAATTATAATAT-GT----------ATCTATTTTATAATA-AATAGTAATAATATACCTCCTGGGAAAT---ATAATAATAATTA-----ATTATTAAgagacagggtcttgctcatctattgccca-gctggagtgcagtg--cagatcatagcctcactgcag--tcaacgttctcaggctcaagcaatcctcccgttttagcctcctgagtcac-gggac--acggtgcaca-----atgcccagc-aattttttaattttttgcatagaaggcgagtctcactatgttgcccggcctggtccagaacccctaggctcaagcactctt-ccagcttccaaag-gctgtggtgacag-tgtgagccaccatg-ccggccAGG------------TCGGACAAGTACTAACATACTGTCCATAACATAAGCTGGCCATGCGATGCATACGGCCTGCCTATAGTTTTCTGCAAATCCAAAAAAGCTTGCTGCAACTTCagaaagcaaaaaaaaagaaagagagaaagagag
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             44241 1589 -     71016 ATAAAATAGTATAATTATTTTATAATACTTAATAAAATAATTTTACAATAATTTTATAATAAACATAATTTATAATAAAATAAT--TATATAATAAATATAATTTATAATAAAATAATTTTATACAAATATAATTTATAATAAAATAATTTTATAATAAACATAATTTTATAATAAATATAAT----TTTATAATA------AAAATAATTTTATAGTAAATATAATTTATAATAAaataattttataataataaaataattatataataaatataatttataacaaaataattttataataataaaataattatata-atataatttat----aacaaaataattttataataattaataaaacaattatataagtataatttacaacaaaataattttataataattaatacaataattatataataaatataatttataacaaaataattttataattaataaaataattatataataaatataATTTATAACAAAATAATTTTATAA---TTAATAAAATAATTACATAATATATTATTATATGATAAC-ATTACTATGA-TAATTATATTAACATATAATTATGTATATATATGCtttctgagatggagtttcactcttgttgcccaggttggagtgcagtggtgcaatctcagctcacc-ataacctctgcttcccgggttcaa-gcaattctcctgcctcagcctcccg-agtagctgggattacaggcatgcaccactacgcccggctaattttgtaattttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcccgacctcaggtgacctgcccacctcggcctcccaaagtgctgggattgcaggcgttaaccactgcactgggccAATATATAATAATGTTAATAATAGCATATT----ATT-AATATATT-ACAACTGACATATTAATAT-------ATAAT--ATATTTAATTACCCATTTT-AGTATGTTAATATATAATATAAAA----ATATGATTAATATA----TAGT--TATTA--A------CATATTAATATA----TTATAT-TGATATGTTAATTATATAATATTTT-AT-ACATTTACATTATATAA---------TAATATATA---ATAATATATAATA-TTTAGTATATAATAATATATACCATATTTATATATTATAATATAGTACATATTAT-ATATTATAATATGGTGTATATTAGAATATATTTTATAATATAATAAT----ATATACTCCCTGGGAAGTATAATAATAATAATTATTATTATTATTAAgagatggggtcttgc---tctattgcccaggctggagtgcagtggtacgatcttag-ctcactgcagcctctac-ctctcaggttcaagcagttctcccattttagcctcctgagtcactgggactacaggtgtgcaccaccatacccagctaatttcgtaattttttgcatagacggagagtctcactatgttgcccagcctggttgggaactcctagactcaagcaatcttccccgcttctaaagtgctggggtgacaggtgtgagccaccatgcccggccAGGTTCCCTAAATGTTTGGACAAGTGGTAACA------------------------------------------------AG-T-----------------AGCTTACTGCAAAAGCAGAAAGAAAAAGAAA---aagaaaggaaggaag
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349    0 +  11138919 C
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=1850.000000
s hg38.chrX_KI270880v1_alt          164715 7 +    284869 agagaga
s panPan2.chrUn_NW_014024190v1       86269 7 -    177848 agagaga
i panPan2.chrUn_NW_014024190v1   C 0 T 3855
s gorGor5.CYUI01015925v1            235900 3 +    417917 ----aga
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             45830 7 -     71016 aaaggga
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=20343.000000
s hg38.chrX_KI270880v1_alt          164722 148 +    284869 aggagggagggagggaggaaggaaggagagggagggaggga-aggaaggaaggaaagaaggaagga-aggagagggaggaaggaaagaaggaaggagacggaggaaggagagggaggaaggaaggagagggagga-aggaaagaaggaagg
s gorGor5.CYUI01015925v1            235903 133 +    417917 --gagggagggagggaggaaggaaggagaggaagggaaggacaggaagc-------gaaggaaggagaggagagggagg---------aggaaagagaggaaggaaggagagggagggaggaaggaaaggaaggagagggagggaggagga
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             45837 131 -     71016 --aaagaaagaaggaaggaaggaaagagagagaaagagagg-gggaaggaaggagggagggaaggg-aagaaaggaagg---------aaggaagaaaggaaggaagga-----aggaaggaagga-aggaagga-aggaaggaaggaagA
i macFas5.chrUn_KE146020         C 0 I 142
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349   0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=3103.000000
s hg38.chrX_KI270880v1_alt          164870 55 +    284869 agaca-gagggaggaaggagag---ggaggaaggaaggagagggagggaggaaggaagg
s gorGor5.CYUI01015925v1            236036 58 +    417917 agagaggaggaaggaaggagagggaggaggaaggaaggaga-ggaggaaggaaagaaag
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e macFas5.chrUn_KE146020             45968 142 -     71016 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=895.000000
s hg38.chrX_KI270880v1_alt          164925 5 +    284869 aagga
s gorGor5.CYUI01015925v1            236094 5 +    417917 aagga
i gorGor5.CYUI01015925v1         C 0 I 6
s macFas5.chrUn_KE146020             46110 5 -     71016 AAaaa
i macFas5.chrUn_KE146020         I 142 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=18484.000000
s hg38.chrX_KI270880v1_alt          164930 448 +    284869 gacggaggaag------gagagggagggaggaaggagag---ggagggaggaaggaaggaaggagacggaggaag-------gagagggagggaggaaggagagggagggaggaaggaaggaaggagacggaggaaggagagggaggaaggaaggagagggaggaaggaaggagagggaggaaggagacagggaggaaggagagggaggaaggaagga--gagggagggaggaaggagagggagggaggaaggagagggagggaggaaggagacggaggaaggaaggag--agggaggaaggaaggagagggaggaaggaaagaaggaaggagacagggaggaaggagagggaggaaggaaggagagggagggaggaaggaaggaaggagacggaggaaggagagggaggaaggagagggagggaggaaggagaggaaggaaggagatggaggaaggaaggagaggga
s macFas5.chrUn_KE146020             46115 447 -     71016 gaaagagaaagaaagaaaagaaagaagaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagacagacagacagaaagaaagaaagaaaaagaaagaaagaaagaaagaaagaaa-gaaagaaagaaagaaagaaagaaag--aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggagggagggagggaaggagggaag-gagggaaggaggaagg-gaaggagggagggaggaagtaaagaagggagggaggaaggaaggaaggaagga-aggaaggaaggaaggaaggaagga---aggaaggaagga-aggaaggaaagaagga-agggaggaaggaaagaaggaagga-----agggaggaaagaaagaa---aaaaggaaggagggagggaaggagggaaggagg-gaaggaaggaagga-aagaa
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349   0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e rheMac8.chr6                   143294731 1634 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099   6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=9108.000000
s hg38.chrX_KI270880v1_alt          165378 68 +    284869 ggaaggaaggagggaagggagggaggaaggaaggagagggagggaggaaggaaggagggaagggaggg
s rheMac8.chr6                   143296365 68 + 180051392 ggaaggaaggagggagggaagggaagaaaggaaagaaggaaggaaggaaggaaggaaggaaggaagga
i rheMac8.chr6                   I 1634 C 0
s macFas5.chrUn_KE146020             46562 59 -     71016 agaaggaaagagag-----aaggaagaaaggaaagaaagaagaaagaaa--aagaaagaaagaaag--
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e nomLeu3.chrX_GL398042_1_random     10638 5696 +     35312 I
e otoGar3.GL873584                  249349  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=1396.000000
s hg38.chrX_KI270880v1_alt          165446 4 +    284869 agga
s nomLeu3.chrX_GL398042_1_random     16334 4 +     35312 aaga
i nomLeu3.chrX_GL398042_1_random I 5696 C 0
s rheMac8.chr6                   143296433 4 + 180051392 agga
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46621 3 -     71016 -aga
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249349 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            198497 5131 -   1025902 I
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099 6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=46123.000000
s hg38.chrX_KI270880v1_alt          165450 68 +    284869 aagaaagaaggaaggaagATTCTAATTCAAATCAGTTGCTTAAGAGGGAGAGATCAGGAAGTTCCCAA
s nomLeu3.chrX_GL398042_1_random     16338 68 +     35312 aagaaaaagaaaagcaaaatTCTAATTTAAATCAGTTGCTTAAGAGGGAGAGATCAGGAAGTTCCCAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296437 68 + 180051392 aggaaggaaggaaggaaTATTCTAATTCAAGTCAGTCGCTTAAGAGGGAGAGATCAGGAAATTCCCAA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46624 61 -     71016 aagaaagagaaacaacaaatcctagttcaaatcagtagcttaagagggagagatcaggaag-------
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            203628 68 -   1025902 aagaaggaaggaaggaagATTCTAATTCAAATCAGTCGCTTAAGAGGGAGAGATCAGGAAATTCCCAA
i cerAty1.NW_012001098v1         I 5131 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249349  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e colAng1.NW_012115411v1            304490 1181 +   1230721 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=7205.000000
s hg38.chrX_KI270880v1_alt          165518 6 +    284869 ctaaag
s nomLeu3.chrX_GL398042_1_random     16406 6 +     35312 ctaaag
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296505 6 + 180051392 ctaaag
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46685 4 -     71016 --aaag
i macFas5.chrUn_KE146020         C 0 T 666
s cerAty1.NW_012001098v1            203696 6 -   1025902 ctaaag
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            305671 6 +   1230721 ctaaag
i colAng1.NW_012115411v1         I 1181 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249349 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099 6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=24460.000000
s hg38.chrX_KI270880v1_alt          165524 19 +    284869 tgctggggtgacaggtgtg
s nomLeu3.chrX_GL398042_1_random     16412 19 +     35312 tgctggggtgacaggtgtg
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296511 19 + 180051392 tgctggggtgagaggtgtg
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46023 19 -     71016 TGCTGGGGTGAGAGGTTTG
i macFas5.chrUn_KE146020         T 666 C 0
s cerAty1.NW_012001098v1            203702 19 -   1025902 tgctggggtgagaggtgtg
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            305677 19 +   1230721 tgctggggtgacaggtgtg
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249349  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=98890.000000
s hg38.chrX_KI270880v1_alt          165543 68 +    284869 agccaccatgcccggccAGGTTCCCCAGCTGTTTGGACAAGTAGTAACAAGTAGCCAACTGCAAATGc
s nomLeu3.chrX_GL398042_1_random     16431 67 +     35312 agccaccatgcccggtcAGGTTCCCCAGCTGTTTGGACAAGTAGTAA-AAGTAGCTAACTGCAAATGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296530 68 + 180051392 agccaccatgcccggccAGGTTCCCCAGCTGTTTGGACAAGTAGTAACaagtagctaagtgcaaaggc
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46042 68 -     71016 AGCCACCATGCCCTGCCAGGTTCCCCAGCTGTTTGGACAAGTAGTAACAAGTAGCTAAGTGCAAAGGC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            203721 68 -   1025902 agccactatgcccggccAGGTTCCCCAGCTGTTTGGACAAGTAGTAACAAGTAGCTAACTGCaaaggc
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            305696 68 +   1230721 agccaccatgcccggccAGGTTCCCTAAATGTTTGGACAAGTCGTAACAAGTAGCTTACTGCAGAAGC
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  249349 65 +  11138919 AGCCTCCAGAGCCTGCT---TCTTCTGACTGTTTTGACAAGTGCTAACAAATAGCTAACTACAAATGC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=960.000000
s hg38.chrX_KI270880v1_alt          165611 2 +    284869 ac
s nomLeu3.chrX_GL398042_1_random     16498 2 +     35312 ag
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296598 2 + 180051392 aa
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46110 2 -     71016 AA
i macFas5.chrUn_KE146020         C 0 I 577
s cerAty1.NW_012001098v1            203789 2 -   1025902 aa
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            305764 2 +   1230721 ag
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099 6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=9080.000000
s hg38.chrX_KI270880v1_alt          165613 7 +    284869 aaagaaa
s nomLeu3.chrX_GL398042_1_random     16500 7 +     35312 aaagaag
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296600 7 + 180051392 aaagaaa
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             46689 7 -     71016 aaagaaa
i macFas5.chrUn_KE146020         I 577 C 0
s cerAty1.NW_012001098v1            203791 7 -   1025902 aaagaaa
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            305766 7 +   1230721 aaagaaa
i colAng1.NW_012115411v1         C 0 I 1077
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099 6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=1386.000000
s hg38.chrX_KI270880v1_alt          165620 2 +    284869 ga
s nomLeu3.chrX_GL398042_1_random     16507 2 +     35312 aa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143296607 2 + 180051392 ga
i rheMac8.chr6                   C 0 I 1232
s macFas5.chrUn_KE146020             46696 2 -     71016 ga
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            203798 2 -   1025902 ga
i cerAty1.NW_012001098v1         C 0 I 452
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e colAng1.NW_012115411v1            305773 1077 +   1230721 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099 6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=3950.000000
s hg38.chrX_KI270880v1_alt          165622 27 +    284869 -aggaggaaagaaaga--aagagagagaga
s nomLeu3.chrX_GL398042_1_random     16509 27 +     35312 -agaaggaaagaaaga--gaaggaaggaag
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46698 30 -     71016 aggaaggaaagagggaaggaaggagggagg
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e colAng1.NW_012115411v1            305773 1077 +   1230721 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I
e panPan2.chrUn_NW_014024190v1       86276 3855 -    177848 T

a score=10381.000000
s hg38.chrX_KI270880v1_alt          165649 40 +    284869 gaaggaagaaaggaa--agagaaagaa--------gaaaagaaaaaacca
s panPan2.chrUn_NW_014024190v1       82421 39 -    177848 gaaagaaaaagggaa--aaagaaagaa-------agaaaagaaaaaa--a
i panPan2.chrUn_NW_014024190v1   T 3855 C 0
s nomLeu3.chrX_GL398042_1_random     16536 48 +     35312 gaaagaaagaaggaa--agagaaagaaagaaagaagaaaagaaaaaacaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46728 38 -     71016 gaaggaaggaaggaaggaaagaaagaa--------ggaaggaaaga----
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e colAng1.NW_012115411v1            305773 1077 +   1230721 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e gorGor5.CYUI01015925v1            236099  6 +    417917 I

a score=36287.000000
s hg38.chrX_KI270880v1_alt          165689 79 +    284869 attctaattcaaatcagttgcttaagagggagagatcaggaa-gaaagaaagaaggaaag-agaaagaaaggaaaagaaga
s panPan2.chrUn_NW_014024190v1       82460 79 -    177848 ATCCTAATTCAAATCAGTTGCTTAAGAGGGAGAGATCAGGaa-gaaagaaagaaggaaag-agaaagaaagaaaaagaaga
i panPan2.chrUn_NW_014024190v1   C 0 T 4105
s gorGor5.CYUI01015925v1            236105 70 +    417917 attctaattcaaatcagttgcttaagagggagagatcaggaa-gaaagaaagaagg----------gaaagaaaaaacaga
i gorGor5.CYUI01015925v1         I 6 C 0
s nomLeu3.chrX_GL398042_1_random     16584 76 +     35312 atcctaattcaaatgagttgcttgagagggagagattaggaa-gaaagaaagaaggaaag-aaggaaagagaaagaga---
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46766 56 -     71016 -----------------------aagaaggaagga--aggaaggaaggaaagaaagaaagaaggaaggaaggaaagaaaga
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414  0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e colAng1.NW_012115411v1            305773 1077 +   1230721 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=2972.000000
s hg38.chrX_KI270880v1_alt          165768 7 +    284869 gagaaag
s gorGor5.CYUI01015925v1            236175 7 +    417917 aagaaag
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16660 7 +     35312 gagaagg
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46822 7 -     71016 aagaagg
i macFas5.chrUn_KE146020         C 0 I 1
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e colAng1.NW_012115411v1            305773 1077 +   1230721 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e panPan2.chrUn_NW_014024190v1       82539 4105 -    177848 T

a score=67.000000
s hg38.chrX_KI270880v1_alt          165775 6 +    284869 agagag-
s gorGor5.CYUI01015925v1            236182 6 +    417917 agaaag-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16667 6 +     35312 aaggaa-
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46830 5 -     71016 -aggaa-
i macFas5.chrUn_KE146020         I 1 C 0
s colAng1.NW_012115411v1            306850 6 +   1230721 -agaaag
i colAng1.NW_012115411v1         I 1077 C 0
e manLeu1.NW_012108508v1            139900 3495 -    350446 I
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e panPan2.chrUn_NW_014024190v1       82539 4105 -    177848 T

a score=398.000000
s hg38.chrX_KI270880v1_alt          165781 1 +    284869 a
s gorGor5.CYUI01015925v1            236188 1 +    417917 a
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16673 1 +     35312 g
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             46835 1 -     71016 g
i macFas5.chrUn_KE146020         C 0 C 0
s manLeu1.NW_012108508v1            143395 1 -    350446 a
i manLeu1.NW_012108508v1         I 3495 C 0
s colAng1.NW_012115411v1            306856 1 +   1230721 a
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e cerAty1.NW_012001098v1            203800 452 -   1025902 I
e rheMac8.chr6                   143296609 1232 + 180051392 I
e macNem1.NW_012017243v1            291039 3315 +  25972781 I
e panPan2.chrUn_NW_014024190v1       82539 4105 -    177848 T

a score=14909.000000
s hg38.chrX_KI270880v1_alt          165782 8 +    284869 gaaagaaa
s panPan2.chrUn_NW_014024190v1       78434 8 -    177848 gaaagaaa
i panPan2.chrUn_NW_014024190v1   T 4105 C 0
s gorGor5.CYUI01015925v1            236189 8 +    417917 aagaaaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16674 7 +     35312 -gaaagaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143297841 8 + 180051392 gaaggaag
i rheMac8.chr6                   I 1232 C 0
s macFas5.chrUn_KE146020             46836 8 -     71016 gaaagaaa
i macFas5.chrUn_KE146020         C 0 I 597
s cerAty1.NW_012001098v1            204252 8 -   1025902 gaaggaag
i cerAty1.NW_012001098v1         I 452 C 0
s manLeu1.NW_012108508v1            143396 8 -    350446 gaaggaag
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            306857 8 +   1230721 aaaagaag
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=3600.000000
s hg38.chrX_KI270880v1_alt          165790 1 +    284869 g
s panPan2.chrUn_NW_014024190v1       78442 1 -    177848 g
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236197 1 +    417917 g
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16681 1 +     35312 g
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143297849 1 + 180051392 g
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             47441 1 -     71016 g
i macFas5.chrUn_KE146020         I 597 C 0
s cerAty1.NW_012001098v1            204260 1 -   1025902 g
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            143404 1 -    350446 g
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            306865 1 +   1230721 g
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e otoGar3.GL873584                  249414 0 +  11138919 C
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=51209.000000
s hg38.chrX_KI270880v1_alt          165791 23 +    284869 aaagaaagaaagaaagaaagaca
s panPan2.chrUn_NW_014024190v1       78443 21 -    177848 aaagaaaga--gaaagaaagaaa
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236198 23 +    417917 aaagacagaaaaagaagaaaaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16682 21 +     35312 gaagaaaaa--gaaagaaggaaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143297850 23 + 180051392 aaggaaagaaagaaagaaagaag
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             47442 23 -     71016 aaagaaagaaagaaagaaagaag
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            204261 23 -   1025902 aaataaggaaagaaagaaagaag
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            143405 23 -    350446 aaggaaggaaagaaagaaagaag
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            306866 23 +   1230721 aaaaaaaggaaggaaggaaggaa
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  249414 23 +  11138919 AAAGGGGGAAAAAAAAGAAACAG
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  220360 7134 +    465904 I
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=282795.000000
s hg38.chrX_KI270880v1_alt          165814 112 +    284869 gaaag-aaaAACAAATCCTAATTCAAATCACTTGCTTAAGAGGGAGAAATAAGGCAATTTCCC-ACCAGG--AGGA--TGCCGTCTAGATCGGACGGTGTTGTTGGTA-CGGGACCTGA
s panPan2.chrUn_NW_014024190v1       78464 111 -    177848 gaaag-aaaAACAAACCCTAATTCAAATCAGTTGCTTAAGAGGGAGAAATAAGGCAATTTCCC-CCCAGG--AGGA--TGCCGTCTAGATCAGACGGCGTTGTTGGCA-CGGC-CCTGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236221 111 +    417917 gaaagaaaaaacaaaTCCTAATTCAAATCAGTTGCT--AAGAGGAGAAATAAGGCCAATTCCC-ACCAGGGAAGGA--TGCCG-CTAGATCGGACGGCTTTGTTGGTA-CGGC-CCTGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16703  98 +     35312 gaaag-aaag--------------aaagCAGCTGCTCAAGAGGGAGAGATCAGGGAATTTCCCAACCAGG--AGGG--TGTCATCTAGACCGGACGGCATTGTAGGTA-CAGC-CCTGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143297873 114 + 180051392 gaaga-aaaaacaaaTCCTAATTCAAGTCCGTTGCTTAAGAGGGAGAACTGAGGCCATTTCCC-AGCCGG--AGGATGTGTCCTCTAGATCGGAGGGCATCGTTGGTAGCAGC-CCTGA
i rheMac8.chr6                   C 0 I 5
s macFas5.chrUn_KE146020             47465 114 -     71016 gaaga-aaaaacaaatcctaattcaagtccgttgcttaagagggagaacTGAGGCCATTTCCC-AGCCGG--AGGATGTGTCCTCTAGATCGGAGGGCATCGTTGGTAGCAGC-CCTGA
i macFas5.chrUn_KE146020         C 0 I 5
s cerAty1.NW_012001098v1            204284 114 -   1025902 gaaga-aaAAACAAATCCTAATTCCAGTCAATTGCTTAAGAGGGAGAACTGAGGCCATTTCCC-ACCCGG--AGGATGTGTCCTCTAGATCGGAGGGCATCGTTGGTAGCAGC-CCTGG
i cerAty1.NW_012001098v1         C 0 I 5
s manLeu1.NW_012108508v1            143428 114 -    350446 gaaga-aaaaacaaaTCCTAATTCCAGTCAGTTGCTTAAGAGGGAGAACTGAGGCCATTTCCC-ACCCGG--AGGATGTGTCCTCTAGATCGGAGGGCATCGTCGGTAGCAGC-CCTGA
i manLeu1.NW_012108508v1         C 0 I 5
s colAng1.NW_012115411v1            306889 114 +   1230721 ggaga-aaaaaCACATCCTAATTCAAGTCAGTCGCTTAAGAGGGAGAACTGAGGCCACTTCCC-AACCGG--AGGATGTGTCCCCTAGATCGGAGGGCATGGTTGGTACCAGC-CCTGA
i colAng1.NW_012115411v1         C 0 I 5
s saiBol1.JH378345                  227494 107 +    465904 GACAG-AAAAGCAAATCCTAATTGAAATCAGTTGCTTGAAAGGGAGCAATCAGCAAACCTCCCAAATCGC--AGGATGTG-----TGGATCAGAGG---CGGCAGGTGGATGC-CCCGG
i saiBol1.JH378345               I 7134 I 5
s otoGar3.GL873584                  249437 107 +  11138919 AAAAG-AAAAACTAATCCTAACTCAAACCAGTTGCTTAGGAGGCAAAGCTC-GGCACTTTCTA-GGCAGC--AAGA--TGTCATCTGG----GGAGCAGCGGTGGGTGCCAGC-GTTGA
i otoGar3.GL873584               C 0 C 0
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T
e macNem1.NW_012017243v1            291039 3315 +  25972781 I

a score=751940.000000
s hg38.chrX_KI270880v1_alt          165926 230 +    284869 -----CT-----CTGAAGTCACTAACAAAACTCCCAGGCTTTGTGCAA--AGGAGAACCTCTAAG---CCCCCGGGAACGGCGTTTTCTCGCTCGCCACCATGAGTCTGGC-TGGCTCG-CCTCCTTGTAG-AACGAGGTGGCCGCAAGTTTGGCGGCCTCTGGAGAAACGGCGGTGCATTTGTT-GACGTAAGAAGTA--------A----------TGTAGAGGGTGGGGGAG----TGTCTGTTCCATGATAATTTCTGAATAGTGC-G
s panPan2.chrUn_NW_014024190v1       78575 230 -    177848 -----CT-----CTGAAGTCACTAACAGAACTCCCAGGCTTTGTGCAA--AGGAGAACCTCTAAG---CCCCCGGGAACGGCGTTTTCTCGCTCTGCACCATGACTCTGGC-TGGCTCG-CCTCCTTGTAG-AATGAGGAGGCCGCAAGTCTGGCGGCCTCTGGAGAAACGACGGTGCATTTGTT-GATGTAAGAAGTA--------A----------TGTAGAGGGTGGGGGAG----TGTCTGTTCCATGATAATTTCTGAATCATGC-T
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236332 231 +    417917 -----CT-----CTGAAGTCACTAACA-AACTCCCAGGCTTTGTGCAAAGAGGAGAACTCCTAGG---CCCCGGGGAAC-GCGTTTTCTCGCTCTCCACCATGAGTCTGGCGTGGCTCGCCCTCCTTGTAGAAATGAGGTGGCCGCAA-TCTGGTGGCCTCTGGAGAAACGGCGGTGTATTTCTT-GACGTAAGAAGTA--------A----------TGTAGAGGTTGGGGGA-----TGTCTGTTCCATGATAATTTCTGAATAGTGC-T
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     16801 207 +     35312 -----CTTGACCCTGAAGTCACTAAGGAAACTCCCAGGCTTTGTGCAA--A----------------------GGGAACGGCGTTTTCTTGCTCTGCACCATGAGTCTGGC-----------TCATTGTAG-AATGAGGTGGCCGCAAGTTTGCTGGCCTCCGGAGAAACGGCGCTGCATTTCTT-GACGTATGAAGTA--------A----------TGCAGAGGGTGAGGGAA----TGTCTCTTCCATGATAATCTCTGAATAGGGC-T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143297992 227 + 180051392 -----CT-----CTGAAGTCACTCGCAGACCCCCCAGGCTCTGTGCAC--AGGAGAACCGCGAAG---CCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCATGAGTCTGGC-----TCG-ACTCCTCGCAG-AATGAGGTGGCCGCATGGTCAGGGGCGTCCGGAGACACGGCCGTGCATGTCTTGGACGTGCGAAGTC--------A----------TGTAGAGGGTCGGGGAA----AGCCTCTCGCAGGATAATTTCTGGATAGTGC-T
i rheMac8.chr6                   I 5 I 6
s macFas5.chrUn_KE146020             47584 227 -     71016 -----CT-----CTGAAGTCACTCGCAGACCCCCCAGGCTCTGTGCAC--AGGAGAACCGCGAAG---CCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCATGAGTCTGGC-----TCG-ACTCCTCGCAG-AATGAGGTGGCCGCATGGTCAGGGGCGTCCGGAGACACGGCCGTGCATGTCTTGGACGTGCGAAGTC--------A----------TGTAGAGGGTCGGGGAA----AGCCTCTTGCAGGATAATTTCTGGATAGTGC-T
i macFas5.chrUn_KE146020         I 5 I 6
s macNem1.NW_012017243v1            294354 228 +  25972781 -----CT-----CTGAAGTCACTCGCAGACCCCCCAGGCTCTGTGCAC--AGGAGAACCGCGAAG---CCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCATGAGTCTGGC-----TCG-ACTCCTCGCAG-AATGAGGTGGCCGCACGGTCAGGGGCGTCCGGAGACACGGCCGTGCATGTCGTGGACGTGCGAAGTC--------A----------TGTAGAGGGTCGGGGAA----AGCCTCTTGCAGGATAATTTCTGAATAGTGCTT
i macNem1.NW_012017243v1         I 3315 I 6
s cerAty1.NW_012001098v1            204403 228 -   1025902 -----CT-----CGGAAGTCACTCGCAGACCCCCCAGGCTCTGTGCAC--AGGAGAACCGCGAAG---CCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCATGAGTCTGGC-----TCG-ACTCCTCGCAG-AATGAGGTGGCCGCGAGGTGGGTGGCGTCCGGAGACACGGCCGTGCATGTCTTGGACGTACGAAGTC--------A----------TGTGGAGGGTCGGGGAA----AGCCTCTTGCAGGGTAATTTCTGAATAGTGCTT
i cerAty1.NW_012001098v1         I 5 I 6
s manLeu1.NW_012108508v1            143547 227 -    350446 -----CT-----CTGAAGTCACTCGCAGACCCCCCAGGCTCTGTGCAC--AGGAGAACCGCGAAG---CCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCATGAGTCTGGC-----TCG-ACTCCTGGCAG-AATGAGGTGGCCGCGAGGTCAGGGGCGTCCGGAGACACGGCCGTGCATGTCTTGGACGTGCGAAGTC--------C----------TGTAGAGGGTCGGGGAA----AGCCTCTTGCAGGGTAATTTCTGAATAGTGC-T
i manLeu1.NW_012108508v1         I 5 I 6
s colAng1.NW_012115411v1            307008 229 +   1230721 -----CT-----CTGAAGTCACTCACAGACCTCCCAGGCTCTGTGCAA--AGGAGAACTGCGAAGCCTCCTCCGGGAACGGCGTTTTGTCGCTCGCTGCCACGAGTCTGGC-----TCG-ACTCCTCGTGG-AATGAGGTGGCCGCGAGTTTGGTGGCGTCCGGAGACACGGCCGTGCATGTCTT-GACGTGCGAAGTC--------A----------TGTAGAGGGTCGGAGAA----AGGCTTTTGCAGGAGAATTTCTGAGTAGTGC-T
i colAng1.NW_012115411v1         I 5 C 0
s saiBol1.JH378345                  227606 216 +    465904 -----CT-----CTGAAGTCACTGAGAAAACTCCCAGACTTTGTGCCA--A---GAACCTCCAAG---CCTCGGGCAGC------------------ACCACAGATCTGGC-----TCG-ACTCCTCGTAC-AAGGAGGTGGCTGCAGGTTTCGTGGGCCCCGGAGAAGCCACGGTGTATTTCTTGTACGTACGAAGCA--------GGTGCAGACACCAGAGAGCGTCTGGGAA----AGGCTCTTCCGTGGTAATTCCTGAAACGTGC-T
i saiBol1.JH378345               I 5 C 0
s otoGar3.GL873584                  249544 212 +  11138919 CTGTCCT-----CAGAAATCACTAACAGAA----CAAGTTGTTTGCCC--AAAAGA-----GACG---CCATCGAG----------------------CCACGTGTCTGTC-----TGG-GCTGCTTGAGG-GATGAGATGGCACCTACTCTGGTGGCCTCCGGAGAAACCATGGTGCGTTTCTA-GATGTATAAAGTCTAAAGAGAA----------ACCAGAGAGGGGGAGAAAAGCAGGCATTTTAATGATAATTCCTGAAAAGTGT-T
i otoGar3.GL873584               C 0 C 0
e panTro5.chrX                      320117 375 + 155549662 I
e chlSab2.chrUn_KE147541v1          168902 10233 -    811265 T

a score=1007681.000000
s hg38.chrX_KI270880v1_alt          166156 229 +    284869 TTT---CTCCGGAG---CCATACATCATTGTCAACTCA-GAAGATTACACGT-A-CCGTTG-CCTTTGTGAACC--GGGGACT-CGGGGTGGGGGCA--------------------AATGT-CCCCAAATGCAAATCCGCCTGGTAGATAGAGTGAGATAGATATGAATGTAGACACCACGGGTCTCCTTCCCCGAC----AACCCACC-TTTTTTTGTTTGTTTGTTT----------TA-GGTGATTCAGGGACAAAGCTTTCCTGGAA-CAACAAG
s panPan2.chrUn_NW_014024190v1       78805 229 -    177848 TTT---CTCTGGAG---CCATACATCATTGTCAAGTCA-GAAGATTACACGT-A-CCGTTG-CCTTTGTGAACC--GGGGACT-CGGGGTGGGTGCA--------------------AATGTCCCCCAAATGCAAATCCGCCTGGTAGATAGAGTGAGATAGATATGAATGTAGACACCACGGGTCTCCTTCCCCGAC----AACCCACC--TTTTTTGTTTGTTTGTTT----------TA-GGTGATTCAGGGACAAAACTTTCCTGAAA-CAACAAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236563 242 +    417917 TTTCTCCTCCGGAG---CCATACATCATTGTCAAGTCACGAAGATTTCACGT-ACCCGTTGCCCTTTGTGAACCCGCGGGACT-CGGGGTGGGTGCA--------------------ATAGTCCCCCAAATGCAAATCCGCCTGGTAGATAGAGGGAGATAGATATGAATGTAGACACCACGGTCCTCCCTTCCCCACGACAAACCCACC--TTTTTTGTTTGTTTGTTT----------TAGGGTGATTCAGGGACAAAACTTTCCTGAAA-CAACAAG
i gorGor5.CYUI01015925v1         C 0 I 23
s nomLeu3.chrX_GL398042_1_random     17008 228 +     35312 TTT---CTCCAGAG---CCATACGTCATCGTCAAGTCA-GAAGGTGACACGT-A-CCGTTT-CTTTTGTGAACC--AGGGACT-CAGGGTGGGTGTA--------------------AATGT-CCCCAGATGCAAATCCTCGTGGTAGATAAAGCGAGATAGATATGAATGGAGACACCAAGGGTGTCCTTCCCCCAC----AACCTGCC--TTTTTTGTTTGTTTGTTT----------TA-GGTGATTCAGAGACAAAACTTTCCCGAAA-CAACAAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298225 206 + 180051392 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACGTTA-CCATTT-CTTCTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCTCCTGGTAGATAAAGTGACACAGATATGAATGTGGACAGCGCCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTTGTTT----------TCAGGTGATGCCGG--------------------------
i rheMac8.chr6                   I 6 C 0
s macFas5.chrUn_KE146020             47817 206 -     71016 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACGTTA-CCGTTT-CTTCTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCTCCTGGTAGATAAAGTGACACAGATATGAATGTGGACAGCGCCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTTGTTT----------TCAGGTGATGCCGG--------------------------
i macFas5.chrUn_KE146020         I 6 C 0
s macNem1.NW_012017243v1            294588 231 +  25972781 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACGTTA-CCGTTT-CTTCTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCTCCTGGTAGATAAAGTGACACAGATATGAATGTGGACAGCGCCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTAGTTT----------TCAGGTGCTGCAGGGAGAAAACTTCTCTGAAA-CAACGAG
i macNem1.NW_012017243v1         I 6 C 0
s cerAty1.NW_012001098v1            204637 232 -   1025902 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACTTTA-CCATTT-CTTCTGTGAACC--AGGTACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCTCCTGGTAGATAAAGTGACACAGATATGAATGTGGACAGCGCTGGTCTCCTTCCTCCAC----AACCCGCCTTTTTTTTGTTTGTTTGTTT----------TCAGGTGATGCAGGGAGAAAACTTCCCTGAAA-CAACAAG
i cerAty1.NW_012001098v1         I 6 C 0
s chlSab2.chrUn_KE147541v1          158669 231 -    811265 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACTTTA-CTGTTT-CTTTTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCCCCTGGTAGATAAAGCGACACAGATATGAATGTGGACAGCGCCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTTGTTT----------TCAGGCGCTGCAGGGAGAAAACTTCCCCGAAA-CAACAAG
i chlSab2.chrUn_KE147541v1       T 10233 C 0
s manLeu1.NW_012108508v1            143780 231 -    350446 TTT---CTCCAGAG---CCATACATCATTGTCAACTCA-GAAGATTACACTTCA-CCGTTT-CTTCTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAGATGCAAATCCTCCTGGTAGATAAAGTGACACAGATATGAATGTGGACAGCGCCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTTGTTT----------TCAGGTGCTGCAGGGAGAAAACTTCCCTGAAA-CAACAAG
i manLeu1.NW_012108508v1         I 6 C 0
s colAng1.NW_012115411v1            307237 231 +   1230721 TTT---CTCCAGAG---CCATACATCATTGTCAGCTCA-GAAGATTACACGTTA-CCGTTT-CTTTTGTGAACC--AGGCACT-CGGGGCAGGTGCA--------------------AATGT-CCCCAAATGCAAATCCGCCTGGTAGATAAAGTGACACAGATATGAATGGAGACAGCACCGGTCTCCTTCCTCCAC----AACCCGCC-TTTTTTTGTTTGTTTGTTT----------TCAGGTGATGCAGGGAGAAAACTTCCCTGAAA-CAACAAG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  227822 238 +    465904 TTT---CAGCAGAGCCCCCATATGTCATTGTCAAGTCA-GAAGATCCCCCTT-A-ACGTTT-CTTCTGTGAACC--AGGGACTCCGGGGCGGGTGGATTGCAAATCCCCCTGGTAGGAATGC-ATCCAAATGCAAATCCTCCGGGGAGATGG------------ATGGATGCAGACAGC---------------CCAC----CTTGTATT-TTTTTTTTTTTTTTGGTTTATTTATTGGATTACATGATTCAGGGACAAAACTTTCCCAAAATTAACTAT
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  249756 212 +  11138919 TTT---CAGCAGAA---CCATACATCATTGTCAAACGA-GGAGATTAAACTT-A-TTGTTT-CTGTTTTGAACC--AGAGACT-CAAGGTGAGTGGA--------------------AATGT-CTCGTAATGCAAAACAGGCTGGCAGATGGAGCGGCGCGGATATGGGGGCCGACAGCACAAGTTTTC-------------CTCCCGTT---------TTCATTTCTTT----------CTAGGTGATTCGGGGACAAA-CTTTTCCAAAA-TGATGAT
i otoGar3.GL873584               C 0 C 0
e panTro5.chrX                      320117 375 + 155549662 I

a score=50396.000000
s hg38.chrX_KI270880v1_alt          166385 18 +    284869 GCTGAAATTACATCATCA
s panPan2.chrUn_NW_014024190v1       79034 18 -    177848 GCTCAAATGATATCATAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17236 18 +     35312 GCTCAAATTATATCATGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macNem1.NW_012017243v1            294819 18 +  25972781 GCTCAAATTATATCGTGC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            204869 18 -   1025902 GCTCAAATTATATCATGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          158900 18 -    811265 GCTCAAATTATATCATGC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144011 18 -    350446 GCTCAAATTATATCATGC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307468 18 +   1230721 GCTCAAATTATATCACGC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  228060 18 +    465904 GCTCACATCGTATCCTGT
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  249968 18 +  11138919 GCTGAAATGATACCTTGC
i otoGar3.GL873584               C 0 C 0
e panTro5.chrX                      320117 375 + 155549662 I
e rheMac8.chr6                   143298431  0 + 180051392 C
e macFas5.chrUn_KE146020             48023  0 -     71016 C
e gorGor5.CYUI01015925v1            236805 23 +    417917 I

a score=646946.000000
s hg38.chrX_KI270880v1_alt          166403 144 +    284869 TTG--CAGACGTCCGTCGG-CAAG-CGGCGTTTT-ATTTCAAGG--CTAGGAG-CTGAAATGATCGTGTTCAGTCAC-GCACACCGTCTATGATAAGGTAGGTCTGGGCGGGAAGGGAGGTGCAGAATACATGCAATCAT---------TCATCGAGATGAA
s panPan2.chrUn_NW_014024190v1       79052 145 -    177848 TTG--CAGACATCCGTCGG-CAAGCCCGCGTTTT-ATTTCAAGG--CCGGGAG-CTGAAAGGATCGTGTTCAGTCAC-GCACACCGTCTATGATAAGGTACGTCTGGGCGGGAAGGGAGGTGCAAAATACATGCGATCAT---------TCATTGAGATGAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236828 146 +    417917 TTG--CAGACATCCGTCGGCCAAGCCCGCGTTTT-ATTTCAAAGTCCCGGGAG-CTGAAAGGATCGTGTTCAGTCACGGCACACCATCTATGATAA-GTAGGTCTGGG-GGGAAGGGAGGTGCAAAATACATGCGATCAT---------TCATTGAGATAA-
i gorGor5.CYUI01015925v1         I 23 C 0
s nomLeu3.chrX_GL398042_1_random     17254 145 +     35312 TTA--CAGACATTCAAAGG-CAAAGCCACATTTT-ATTTCAAGG--CTGGGAG-CTGAAGCCATCACGTTCAGTCCC-GCACACCATCTATTATGAGCTAGGTCTGGGCGGAAAGGGAGGTGCAAAATACATGCAATCAT---------TCGTGGATATGAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298431 142 + 180051392 -----CAGACACCCATCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAG-CCGAAATGACGGTGTTTAGTCAC-ACACGGCATCTATTATAAGGTAGGCCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCAT---------TCATTGAGATGAA
i rheMac8.chr6                   C 0 I 5
s macFas5.chrUn_KE146020             48023 142 -     71016 -----CAGACACCCATCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAG-CCGAAATGACGGTGTTTAGTCAC-ACACGGCATCTATTATAAGGTAGGCCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCAT---------TCATTGAGATGAA
i macFas5.chrUn_KE146020         C 0 I 5
s macNem1.NW_012017243v1            294837 147 +  25972781 TGGCAGAGACATCCATCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAG-CCGAAATGACGGTGTTTAGTCAC-ACACGGCATCTATTATAAGGTAGGCCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCAT---------TCATTGAGATGAA
i macNem1.NW_012017243v1         C 0 I 5
s cerAty1.NW_012001098v1            204887 146 -   1025902 TGG--CAGACATCCGTCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAGCCCGAAATGACGGTGTTTAGTCAC-ACACGGCATCTATTATAAGGTAGGTCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCGT---------TCATTGAGATGAA
i cerAty1.NW_012001098v1         C 0 I 5
s chlSab2.chrUn_KE147541v1          158918 145 -    811265 TGG--CAGACATCCATCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAG-CCGAAATGACGGTGTTTAGTCAC-ACACAGTATCTATTATAAGGCAGGTCTGGGCGGGAAGGCAGGTGCAAAATACATGCTATCAT---------TCATTGAGATGAA
i chlSab2.chrUn_KE147541v1       C 0 I 5
s manLeu1.NW_012108508v1            144029 145 -    350446 TGG--CAGACATCCGTCGG-CAGC-CCACGTTTTAATTTCAAGG--CTGGGAG-CCGAAATGACGGTGTTTAGTCAC-ACACGGCGTCTATTATAAGGTAGGTCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCGT---------TCATTGAGATGAA
i manLeu1.NW_012108508v1         C 0 I 5
s colAng1.NW_012115411v1            307486 144 +   1230721 TGG--CAGACATCCGTCGG-CAAC-CCACCTTTT-ATTTCAAGG--CTGGGAG-CCGAAAGGATGGTGTTTAGTCAC-CCACAGCATCTATTATAAGGTAGGTCTGGGCGGGAAGGGAGGTGCAAAATACATGCTATCAT---------TCATTGAGATGAA
i colAng1.NW_012115411v1         C 0 I 5
s saiBol1.JH378345                  228078 144 +    465904 GTA--GGGACCTCCATCTT-CAAC-CCGTGTTTT-GTTTCCAGC--CCGGGAG-CAGAAACGATCCTGTTCAGTCGC-ACACACCATGTGTCCTGAGGTAGGTCTGGGCGGGAATTCAGGTGCAAAGTCAATGCTATCCT---------TCATTTAGATGGA
i saiBol1.JH378345               C 0 I 6
s otoGar3.GL873584                  249986 148 +  11138919 TTA--GACACAGCCCTCAG-CACT-GCAGGCTTT-ATTCTAAGG--CCGGCAG--TGAAGTTATTTTCCACGATCAC-TCAGCCCATTAGTTATGAGGTAGGGTGGGGGGTGA----AGGTGCAGGACAAACACCACCATTAAGTTTGCTTATTTAGAGTAA
i otoGar3.GL873584               C 0 C 0
e panTro5.chrX                      320117 375 + 155549662 I

a score=194074.000000
s hg38.chrX_KI270880v1_alt          166547 44 +    284869 -----------------AATAA---AGTCAATCGAG--CGCTC-TC-CCCCTGGAG-------------------------------------GGAACAGGAAGG
s panTro5.chrX                   155218612 46 - 155549662 -----------------AATAA---AGTCAATCGAG--CGCTCGTCTCCCCTGGAG-------------------------------------CGAACAGGAAAG
i panTro5.chrX                   T 74927 C 0
s panPan2.chrUn_NW_014024190v1       79197 44 -    177848 -----------------AATAA---AGTCAATCGAG--CGCTC-TC-CCCCTGGAG-------------------------------------GGAACAGGAAGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            236974 43 +    417917 -----------------AATGA---AGTCAATCGAG--CGCTG-TC-CCCCTGGAG-------------------------------------GGAACA-GAAGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17399 46 +     35312 -----------------AATAAAATAGTCAGTTGAG--CTCTC-TC-CCCC-AGAG-------------------------------------GGGACAGGAAGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298578 43 + 180051392 -----------------AATAA---AGTCAGTTGAG--CTCGC--C-TCCCCGGAG-------------------------------------GGGACAGGAAGG
i rheMac8.chr6                   I 5 C 0
s macFas5.chrUn_KE146020             48170 43 -     71016 -----------------AATAA---AGTCAGTTGAG--CTCGC--C-TCCCCGGAG-------------------------------------GGGACAGGAAGG
i macFas5.chrUn_KE146020         I 5 C 0
s macNem1.NW_012017243v1            294989 45 +  25972781 -----------------AATAA---AGTCAGTTGAGCTCTCGC--C-TCCCCGGAG-------------------------------------GGGACAGGAAGG
i macNem1.NW_012017243v1         I 5 C 0
s cerAty1.NW_012001098v1            205038 43 -   1025902 -----------------AATAA---AGTCAGTTGAG--CTCGC--C-TCCCTGGAG-------------------------------------GGGACAGGAAGG
i cerAty1.NW_012001098v1         I 5 C 0
s chlSab2.chrUn_KE147541v1          159068 43 -    811265 -----------------AATAA---AGTCAGCTGAG--CTCGC--C-TCCCTGGAG-------------------------------------GGGACAGGAAGG
i chlSab2.chrUn_KE147541v1       I 5 C 0
s manLeu1.NW_012108508v1            144179 43 -    350446 -----------------AATAA---AGTCAGTTAAG--CTCGC--C-TCCCCGGAG-------------------------------------GGGACAGGAAGG
i manLeu1.NW_012108508v1         I 5 C 0
s colAng1.NW_012115411v1            307635 43 +   1230721 -----------------AATAA---AGTCAGTTGAG--CTCCC--C-TCCCTGGAG-------------------------------------GGGACAGGAAGG
i colAng1.NW_012115411v1         I 5 C 0
s saiBol1.JH378345                  228228 38 +    465904 -----------------AATAA---AGTCAATCGAC--CTCTC--T-CCCCGGGAC-------------------------------------GGGACGG-----
i saiBol1.JH378345               I 6 M 10716
s otoGar3.GL873584                  250134 99 +  11138919 AATAAAGTGAAATGAGAAATAA---AGGAAGATGAG--CCCTCATC-CCCCAAGGGGGTAATCACAATGTCACAGAGGACACTTTGCACCTGTGGGGCAGGAAGG
i otoGar3.GL873584               C 0 C 0

a score=61490.000000
s hg38.chrX_KI270880v1_alt          166591 34 +    284869 CAAACGTTTGT-CTGGCTGAAAA------------CACA-GGCAAAA-A
s panTro5.chrX                   155218658 33 - 155549662 CAAACGTTTAT--TGGCTGAAAA------------CACATGGCAAAA--
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79241 33 -    177848 CAAACGTTTAT-CTGGCTGAAAA------------CACA-GGCAAAA--
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237017 36 +    417917 CAAACGTTTATGCTGGCTGAAAA------------CACA-GCCAAAAAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17445 34 +     35312 CAAACGTTCAT-CTGGCTGAGAA------------CGCA-GGCAAAA-A
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298621 22 + 180051392 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48213 22 -     71016 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295034 22 +  25972781 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205081 22 -   1025902 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159111 22 -    811265 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144222 22 -    350446 CAAACGTGTAT-CTGGCTGAAAA--------------------------
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307678 34 +   1230721 CAAACGTGTAT-CTGCCTGAAAATACAGGCAAAAA--------------
i colAng1.NW_012115411v1         C 0 I 15
s otoGar3.GL873584                  250233 30 +  11138919 AGAACGT-----CTGGCTGAACT------------CCCAGACCAGGG--
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M

a score=38367.000000
s hg38.chrX_KI270880v1_alt          166625 13 +    284869 AATTTAGACGTTG-
s panTro5.chrX                   155218691 10 - 155549662 ---TTAGACGTTG-
i panTro5.chrX                   C 0 I 1
s panPan2.chrUn_NW_014024190v1       79274 13 -    177848 AATTTAGACGTTG-
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237053 12 +    417917 AATTTAGAC-TTG-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17479 13 +     35312 AATTTAGACGATG-
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298643 13 + 180051392 ATTTCAGACGATG-
i rheMac8.chr6                   C 0 I 1
s macFas5.chrUn_KE146020             48235 13 -     71016 ATTTCAGACGCTG-
i macFas5.chrUn_KE146020         C 0 I 1
s macNem1.NW_012017243v1            295056 13 +  25972781 ATTTCAGACGATG-
i macNem1.NW_012017243v1         C 0 I 1
s cerAty1.NW_012001098v1            205103 13 -   1025902 ATTTCAGACGATG-
i cerAty1.NW_012001098v1         C 0 I 1
s chlSab2.chrUn_KE147541v1          159133 13 -    811265 ATTTCAGGCGATG-
i chlSab2.chrUn_KE147541v1       C 0 I 1
s manLeu1.NW_012108508v1            144244 13 -    350446 ATTTCAGACGATG-
i manLeu1.NW_012108508v1         C 0 I 1
s otoGar3.GL873584                  250263 14 +  11138919 AACCTGGACGACTG
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e colAng1.NW_012115411v1            307712 15 +   1230721 I

a score=265388.000000
s hg38.chrX_KI270880v1_alt          166638 62 +    284869 TCTATAGCTGCAA-CCAGATTTGGAGACAGA-GGCCAAGCACC--TGAATCGTTGCCCCA--ACTTTC
s panTro5.chrX                   155218702 59 - 155549662 TATATAGCTGCAA-CCAGATTTGGA-AC-GA-GGCCAAGCACG---GAATCGTTGCCCCA--ACTTTC
i panTro5.chrX                   I 1 I 153
s panPan2.chrUn_NW_014024190v1       79287 62 -    177848 TATATAGCTGCAA-CCAGATTTGGAGACAGA-GGCCAAGCACC--GGAATCGTTGCCCCA--ACTTTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237065 65 +    417917 TAGATAGCTGCAGCCCAGATTTGGAGACAGAGGGCCAAGCACCTGTGAATCGTTGCCCCA--ACGTC-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17492 60 +     35312 --TATAGCTGCAT-CCAGATTTGGAGACAGA-GGCCAAGCACC--TGAATCGTTGCCCCA--GCTTTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298657 62 + 180051392 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAATTTCTGTCCCA--ACtttc
i rheMac8.chr6                   I 1 C 0
s macFas5.chrUn_KE146020             48249 62 -     71016 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAATTTCTGTCCCA--ACtttc
i macFas5.chrUn_KE146020         I 1 C 0
s macNem1.NW_012017243v1            295070 62 +  25972781 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAATTTCTGTCCCA--ACtttc
i macNem1.NW_012017243v1         I 1 C 0
s cerAty1.NW_012001098v1            205117 62 -   1025902 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAAGTTATGCCCCA--ACtttc
i cerAty1.NW_012001098v1         I 1 C 0
s chlSab2.chrUn_KE147541v1          159147 62 -    811265 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAAGTTATGCCCCA--ACtttc
i chlSab2.chrUn_KE147541v1       I 1 C 0
s manLeu1.NW_012108508v1            144258 62 -    350446 TTTATACCTGCAT-CCAGATTTCGAGACAGA-GGCCAAGCACC--TGAAGTTATGCCCCA--ACtttc
i manLeu1.NW_012108508v1         I 1 C 0
s colAng1.NW_012115411v1            307727 62 +   1230721 TTTATAGCTGCAG-CCAGATGTCGAGACAGA-GGCCAAGCACC--TGAATTTCTGCTGCA--ACTTTC
i colAng1.NW_012115411v1         I 15 C 0
s otoGar3.GL873584                  250277 45 +  11138919 --------------------TCTGCCAAGGC-AGCCAAGCACC--CACGGTTACTTCTCAGGACTTTC
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M

a score=61116.000000
s hg38.chrX_KI270880v1_alt          166700 13 +    284869 TAGTTTTAACCTG
s panPan2.chrUn_NW_014024190v1       79349 13 -    177848 CAGTTTTAACCTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237130 13 +    417917 TAGTTTTAACCTG
i gorGor5.CYUI01015925v1         C 0 I 19
s nomLeu3.chrX_GL398042_1_random     17552 13 +     35312 TAGTTTTAACCTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298719 13 + 180051392 tatttttaacgtg
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48311 13 -     71016 tatttttaacgtg
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295132 13 +  25972781 tatttttaacgtg
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205179 13 -   1025902 tatttttaacctg
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159209 13 -    811265 tatttctaacctg
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144320 13 -    350446 tatttttaacgtg
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307789 13 +   1230721 TATTTTTAACCTG
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  250322 13 +  11138919 TATATTTAACCTG
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I

a score=14231.000000
s hg38.chrX_KI270880v1_alt          166713 6 +    284869 ATATTC
s panPan2.chrUn_NW_014024190v1       79362 6 -    177848 ATATTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17565 6 +     35312 ATATTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298732 6 + 180051392 ttcttt
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48324 6 -     71016 ttcttt
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295145 6 +  25972781 ttcttt
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205192 6 -   1025902 ttattt
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159222 6 -    811265 ttattt
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144333 6 -    350446 ttcttt
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307802 6 +   1230721 TTATTT
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  250335 6 +  11138919 ACATTT
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I
e gorGor5.CYUI01015925v1            237143 19 +    417917 I

a score=67894.000000
s hg38.chrX_KI270880v1_alt          166719 20 +    284869 GGTGTGTCATGTTA-TTTTGT
s panPan2.chrUn_NW_014024190v1       79368 20 -    177848 GGTGTGTCATGTTA-TTTTGT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237162 21 +    417917 GGTGTGTCATGTGATTTTTGt
i gorGor5.CYUI01015925v1         I 19 C 0
s nomLeu3.chrX_GL398042_1_random     17571 20 +     35312 GGTGTGTCATTTTA-TTTTGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298738 20 + 180051392 gctgggtcatattc-ttttct
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48330 20 -     71016 gctgggtcatattc-ttttct
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295151 20 +  25972781 gctgggtcatattc-ttttct
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205198 20 -   1025902 gctgtgtcatattc-ttttct
i cerAty1.NW_012001098v1         C 0 I 35
s chlSab2.chrUn_KE147541v1          159228 20 -    811265 gctgtgtcatgttc-ttttct
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144339 20 -    350446 gctgtgttatgttc-ttttct
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307808 20 +   1230721 GCTGTGTCATGTTC-TTTTCT
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  250341 20 +  11138919 GCTGCGTCATTTAA-ATGAAA
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I

a score=2592.000000
s hg38.chrX_KI270880v1_alt          166739 4 +    284869 TTTA--
s panPan2.chrUn_NW_014024190v1       79388 4 -    177848 TTCA--
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237183 4 +    417917 ttta--
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17591 4 +     35312 TTTA--
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298758 4 + 180051392 tttc--
i rheMac8.chr6                   C 0 I 35
s macFas5.chrUn_KE146020             48350 4 -     71016 tttc--
i macFas5.chrUn_KE146020         C 0 I 28
s macNem1.NW_012017243v1            295171 4 +  25972781 tttc--
i macNem1.NW_012017243v1         C 0 I 28
s chlSab2.chrUn_KE147541v1          159248 4 -    811265 tttc--
i chlSab2.chrUn_KE147541v1       C 0 I 12
s manLeu1.NW_012108508v1            144359 4 -    350446 tttc--
i manLeu1.NW_012108508v1         C 0 I 36
s colAng1.NW_012115411v1            307828 3 +   1230721 TTT---
i colAng1.NW_012115411v1         C 0 I 20
s otoGar3.GL873584                  250361 6 +  11138919 TCTGCA
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I
e cerAty1.NW_012001098v1            205218 35 -   1025902 I

a score=-2702.000000
s hg38.chrX_KI270880v1_alt          166743 6 +    284869 ---CTGTCA
s panPan2.chrUn_NW_014024190v1       79392 6 -    177848 ---CTATCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237187 3 +    417917 ---tta---
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17595 3 +     35312 ---TTA---
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             48382 3 -     71016 ---tTA---
i macFas5.chrUn_KE146020         I 28 I 4
s macNem1.NW_012017243v1            295203 3 +  25972781 ---ttt---
i macNem1.NW_012017243v1         I 28 I 4
s chlSab2.chrUn_KE147541v1          159264 3 -    811265 ---tta---
i chlSab2.chrUn_KE147541v1       I 12 I 13
s colAng1.NW_012115411v1            307851 3 +   1230721 ---tta---
i colAng1.NW_012115411v1         I 20 I 1
s otoGar3.GL873584                  250367 6 +  11138919 CAGTCA---
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            144363 36 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I
e cerAty1.NW_012001098v1            205218 35 -   1025902 I
e rheMac8.chr6                   143298762 35 + 180051392 I

a score=42394.000000
s hg38.chrX_KI270880v1_alt          166749  9 +    284869 tttt---atttt
s panPan2.chrUn_NW_014024190v1       79398  9 -    177848 tttt---atttt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237190  8 +    417917 -ttt---atttt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17598  9 +     35312 TTTC---Atttt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298797  9 + 180051392 tttt---atttt
i rheMac8.chr6                   I 35 C 0
s macFas5.chrUn_KE146020             48389  9 -     71016 tttt---atttt
i macFas5.chrUn_KE146020         I 4 C 0
s macNem1.NW_012017243v1            295210  9 +  25972781 tttt---atttt
i macNem1.NW_012017243v1         I 4 C 0
s cerAty1.NW_012001098v1            205253  9 -   1025902 tttt---atttt
i cerAty1.NW_012001098v1         I 35 C 0
s chlSab2.chrUn_KE147541v1          159280 12 -    811265 ttttAAAAtttt
i chlSab2.chrUn_KE147541v1       I 13 C 0
s manLeu1.NW_012108508v1            144399  9 -    350446 tttt---atttt
i manLeu1.NW_012108508v1         I 36 C 0
s colAng1.NW_012115411v1            307855  9 +   1230721 tttt---atttt
i colAng1.NW_012115411v1         I 1 C 0
s otoGar3.GL873584                  250373  9 +  11138919 TTTT---CCTTT
i otoGar3.GL873584               C 0 I 279
e saiBol1.JH378345                  228266 10716 +    465904 M
e panTro5.chrX                   155218761 153 - 155549662 I

a score=32973.000000
s hg38.chrX_KI270880v1_alt          166758 14 +    284869 atttca--t---------ttttttt
s panPan2.chrUn_NW_014024190v1       79407 23 -    177848 attttt--ttttaatttattttttt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237198 16 +    417917 aaatta--t-------tattttttt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     17607 14 +     35312 tttttt--t---------ttttttt
i nomLeu3.chrX_GL398042_1_random C 0 I 2365
s rheMac8.chr6                   143298806 14 + 180051392 atttca--t---------ttttttt
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48398 14 -     71016 atttca--t---------ttttttt
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295219 14 +  25972781 atttca--t---------ttttttt
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205262 14 -   1025902 atttca--t---------ttttttt
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159292 16 -    811265 atttcattt---------ttttttt
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144408 13 -    350446 atttc---t---------ttttttt
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307864 15 +   1230721 attccat-t---------ttttttt
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I
e panTro5.chrX                   155218761 153 - 155549662 I

a score=189479.000000
s hg38.chrX_KI270880v1_alt          166772 53 +    284869 gagatg-gagtctcgctctgtcac-caggccggagtgcagtggcgcgatctcggc
s panPan2.chrUn_NW_014024190v1       79430 53 -    177848 gagatg-gagtctcactctgtcac-caggctggagtgcagtggcccgatctcagc
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237214 50 +    417917 gagatgcgagt----ctctgtcac-caggccggagtgcaatggtgcgatctcggc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     19986 54 +     35312 gagatg-gagtctcactctgttactcaggctggagtgcagtggcacgatctcggc
i nomLeu3.chrX_GL398042_1_random I 2365 C 0
s rheMac8.chr6                   143298820 47 + 180051392 gagacg-gag------tctgtcgc-caggccagagtgcagtggcgcgatctcggc
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48412 47 -     71016 gagacg-gag------tctgtcgc-caggccagagtgcagtggcgcgatctcggc
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295233 47 +  25972781 gagacg-gag------tctgtcgc-caggccagagtgcagtggcgcgatctcggc
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205276 53 -   1025902 gagagg-gagtctctctctgtcac-caggccagagtgcagtggcgtgatctcggc
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159308 53 -    811265 gagtgg-gagtctctctctgtcgc-caggccagagtgcaatggcgcgatctcagc
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144421 49 -    350446 gagagg-gag----tctctgttgc-caggccagagtgcagtagcgcgatctcggc
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307879 53 +   1230721 gagatg-gagtctctctctgtcac-caggccagagtgcaacggtgtgatctctgc
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I
e panTro5.chrX                   155218761 153 - 155549662 I

a score=326860.000000
s hg38.chrX_KI270880v1_alt          166825 76 +    284869 tcactgcaacctccgcctcccgggttcaag-cgattctcctgcctc-agcctcccaggtagctgggactacaggcgc----c
s panTro5.chrX                   155218914 76 - 155549662 tcactgcaacctccacctcccgggttcaag-cgattctcctgcctc-agcctcgtgagtagctgggactacaggcac----c
i panTro5.chrX                   I 153 C 0
s panPan2.chrUn_NW_014024190v1       79483 76 -    177848 tcactgcaacctccacctcccgggttcaag-cgattctcctgcctc-agcctcgtgagtagctgggactacaggcac----c
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237264 77 +    417917 tcactgcaacctccacctcccgggttcaagccgattctcctgcctcaagcctcctgagtagct-ggactacaggcgc----c
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20040 75 +     35312 tcactgcaacctccgcctcccaggttcaa--tgattctcctgcctc-agcctcctgcatagctgggactacaggcat----g
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298867 74 + 180051392 tcattgcaacctctgcttcccaggttccag-cgattctcctgcctc-agcct-ccgagtagctgtggctacaggcgc-----
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48459 74 -     71016 tcattgcaacctctgcttcccaggttccag-cgattctcctgcctc-agcct-ccgagtagctgtggctgcaggcgc-----
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            295280 75 +  25972781 tcattgcaacctctgcttcccaggttccag-cgattctcctgcctc-agcct-ccgagtagctgtggctacaggcgcC----
i macNem1.NW_012017243v1         C 0 M 4910
s cerAty1.NW_012001098v1            205329 75 -   1025902 tcattgcaacctccgcttcccaggttccag-cgattctcctgcctc-agcct-ctgagtagctgtggctacaggcac-c---
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159361 76 -    811265 tcattgcaacctctccctcccgggttccag-agattctcctgcctc-agcctcccgagtagctgtggctacaggcgc--c--
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144470 75 -    350446 tcattgcaacctccgcttcccaggttccag-cgattctcctgcctc-agcct-ccgagtagctgtggctatgggcac--c--
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            307932 76 +   1230721 tcattgcaacctcggcctcccaggttccag-cgattctcctgcctc-agcctcccgagtagctgtggctacaggcgc---c-
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I

a score=488659.000000
s hg38.chrX_KI270880v1_alt          166901 125 +    284869 cgccaccacgcccg--gctaatgtttgt---atttttagtagagac-gggatttcaccccgttggccaggctggtctgaaactcctgacct-cgtgatccacccacttc-ggcctcccaaagtgctgggatga
s panTro5.chrX                   155218990 125 - 155549662 tgccaccacgccca--gctaatgtttgt---atttttagtagagac-aggatttcgccccgttggccaggctggtctcaaactcctgacct-cgtgatccacccacttt-ggcctcccaaagtgctgggatga
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79559 125 -    177848 cgccaccacgccca--gctaatgtttgt---atttttagtagagac-aggatttcgccccgttggccaggctggtctcaaactcctgacct-cgtgatccacccacttc-ggcctcccaaagtgctgggatga
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237341 133 +    417917 caccaccacacccagggctaatgtttgttaagtttttagtagagatgggggtttcaccccgttggccaggatggtctcgaactcctgacctccgtgatccacccactttgggcctcccaaagtgctgggatga
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20115 125 +     35312 caccaccacgcccg--gctaatttttgt---attttaagtagagac-ggggtttcactatattggccaggctggtcttgaactcctgacct-cgtgatccacctgcctc-agccccccaaagtgttgggatta
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143298941 124 + 180051392 cgccaccacgcccg--gctaat-tttgt---atttttagtagagat-ggggtctcaccctgttaaccaggatggtctctgtctcttgacct-cctgatccatccacctc-ggcctcccaaagtgctgagatGA
i rheMac8.chr6                   C 0 I 39
s macFas5.chrUn_KE146020             48533 124 -     71016 cgccaccacacccg--gctaat-tttgt---atttttagtagagat-ggggtctcaccctgttaaccaggatggtctctgtctcttgacct-cctgatccatccacctc-ggcctcccaaagtgctgagatGA
i macFas5.chrUn_KE146020         C 0 I 4
s cerAty1.NW_012001098v1            205404 124 -   1025902 tgccaccgcgcccg--gctaat-tttgt---atttttagtagagat-ggggtctcaccccgttaaccaggatggtctctatctcttgacct-cctgatccatccacctc-ggcctcccaaagtgctgagatGA
i cerAty1.NW_012001098v1         C 0 I 39
s chlSab2.chrUn_KE147541v1          159437 125 -    811265 cgccaccacgcccg--gctaatgtttgt---atttttagtagagat-ggggtctcaccccgttaaccaggatggtctctgtctcttgacct-cctgatccatccacctc-ggcctcccaaagtgctgagatGA
i chlSab2.chrUn_KE147541v1       C 0 I 39
s manLeu1.NW_012108508v1            144545 124 -    350446 tgccaccacgcccg--gctaat-tttgt---atttttagtagagat-ggggtctcaccctgttaaccaggatggtctctgcctcttgacct-cctgatccatccacctc-ggcctcccaaagtgctgagatGA
i manLeu1.NW_012108508v1         C 0 I 4
s colAng1.NW_012115411v1            308008 119 +   1230721 cgccaccacgccca--gctaatgtttgt---atttttaatagaga-------ctaaccccattggccaggatggtcttgatctcttggcct-cgtgatccacccacctc-ggccttccaaagtgctgcgatta
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M

a score=19805.000000
s hg38.chrX_KI270880v1_alt          167026 14 +    284869 caggcgtgagccac
s panTro5.chrX                   155219115 14 - 155549662 caggcgtgagccac
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79684 14 -    177848 caggcgtgagccac
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237474 14 +    417917 caggcatgagccac
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20240 14 +     35312 caggcgtgagccac
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s colAng1.NW_012115411v1            308127 14 +   1230721 caggcgtgagccac
i colAng1.NW_012115411v1         C 0 I 1939
e manLeu1.NW_012108508v1            144669  4 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I
e chlSab2.chrUn_KE147541v1          159562 39 -    811265 I
e cerAty1.NW_012001098v1            205528 39 -   1025902 I
e rheMac8.chr6                   143299065 39 + 180051392 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M
e macFas5.chrUn_KE146020             48657  4 -     71016 I

a score=10149.000000
s hg38.chrX_KI270880v1_alt          167040 14 +    284869 cgcatccggccTC-T
s panTro5.chrX                   155219129 14 - 155549662 cacatccggccTC-t
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79698 14 -    177848 cacatccggccTC-t
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237488 15 +    417917 cgcatccggccTCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20254 14 +     35312 cgcgcccggccTC-T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            144669  4 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250382 279 +  11138919 I
e chlSab2.chrUn_KE147541v1          159562 39 -    811265 I
e cerAty1.NW_012001098v1            205528 39 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143299065 39 + 180051392 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M
e macFas5.chrUn_KE146020             48657  4 -     71016 I

a score=193881.000000
s hg38.chrX_KI270880v1_alt          167054 220 +    284869 ACACACACGTTTATATACAC-ACAT--ACCTGACCAT-ATA--TATGCA-TACATCTATATTTAT-------------CACACATACG-----TACATAGATGTATGGATTTTGTTACA--GACAGAAACTTA--A--TTTAACCATCTCTGACACAT-TGCTTCTTAAATTATAAAGCCACTTTCCCACTTTCCCAATATCCACTGGTGGCACACTGAATCTGAGTTAGTTCTAAATGTTTCAATGCGATT
s panTro5.chrX                   155219143 220 - 155549662 acacacacatttatatacac-acat--acctgaccat-ata--tatgca-tacatctatatttat-------------cacacatacg-----tacatagatGTATGGATTTTGTTATA--GACAGAAACTTA--A--TTTAACCATCCCTGACACAT-TGCTTCTTAAATTATAAAGCCACTTTCCCACTTTCTCGAAACCCACTGGTGGCACACTGAATCTGAGTTAGTTCTAAATGTTTCAATGCGATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79712 220 -    177848 acacacacatttatatacac-acat--acctgaccat-ata--tatgca-tacatctatatttat-------------cacacatacg-----tacatagatGTATGGATTTTGTTATA--GACAGAAACTTA--A--TTTAACCATCCCTGACACAT-TGCTTCTTAAATTATAAAGCCACTTTCCCACTTTCTCAAAACCCACTGGTGGCACACTGAATCTGAGTTAGTTCTAAATGTTTCAATGCGATT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237503 231 +    417917 ACACACaca-ttatatacactacattaccctgaccataataattatacattacatctatattaTT-------------CACACATATG-----TACATAGATGTATGGATTTTGTTATAGGGACAGAAACTTA--AATTTTAACCATCTCTGAGACACATGCTTCTTAAATTATAAAGCCACTTTCCCACTTTCCCGATATCCACTGGTGGCACACTGAATCTGAGTTAGTTCTAAATGTTTCAGTGCGATT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20268 220 +     35312 ACACACACACTTATGTATAC-ACAT--ACCTGACCAT-ATA--TATGCA-TACATGTATATTTAT-------------CACACCTATG-----TACATAGATGTATGGATTTTATTATA--GACAGAAACTTA--A--TTTAACCATCTCTGACACAT-CGCTTCTTAAATTATAAAGCCATTTTCCCACTTTCCTTATATCCACTTGTGGCATACTGAATCTGACTTAGTTCTAAATGTTTCAATGCGATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584                  250661 242 +  11138919 atacacacgtctatatatgc-acatataaacagccat-gta--tataca-cacacacaGCTGTACATGAGCTTGTGTGCACACAGACACCTTCTATAGACAGGCATGCATTTTACTTCA-GGATGGAGGCGTATGA--TCGATCTACTTCTGACACAT-CTTTTCTTGGCTTATGCGG-CAGTTTCCCACTTTCCCCAGATCCAGCTGCTGCACAGTGCATGCCAGTTTGTCCTGAATGTTGTGAAGGAATT
i otoGar3.GL873584               I 279 I 1047
e manLeu1.NW_012108508v1            144669   4 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e chlSab2.chrUn_KE147541v1          159562  39 -    811265 I
e cerAty1.NW_012001098v1            205528  39 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143299065  39 + 180051392 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M
e macFas5.chrUn_KE146020             48657   4 -     71016 I

a score=12190.000000
s hg38.chrX_KI270880v1_alt          167274 13 +    284869 GTGTGTATATATG
s panTro5.chrX                   155219363 13 - 155549662 GTGTGTATATATG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79932 13 -    177848 GTGTGTATATATG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237734 13 +    417917 GTGTGTATATATG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20488 13 +     35312 GTGTGTATATATG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            144669  4 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159562 39 -    811265 I
e cerAty1.NW_012001098v1            205528 39 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143299065 39 + 180051392 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M
e macFas5.chrUn_KE146020             48657  4 -     71016 I

a score=11598.000000
s hg38.chrX_KI270880v1_alt          167287 5 +    284869 CCTTC
s panTro5.chrX                   155219376 5 - 155549662 CCTTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79945 5 -    177848 CCTTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237747 5 +    417917 CCTTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20501 5 +     35312 CCTCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299104 5 + 180051392 CCTCC
i rheMac8.chr6                   I 39 C 0
s cerAty1.NW_012001098v1            205567 5 -   1025902 CCTCC
i cerAty1.NW_012001098v1         I 39 C 0
s chlSab2.chrUn_KE147541v1          159601 5 -    811265 CCTCC
i chlSab2.chrUn_KE147541v1       I 39 C 0
e manLeu1.NW_012108508v1            144669 4 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M
e macFas5.chrUn_KE146020             48657 4 -     71016 I

a score=102640.000000
s hg38.chrX_KI270880v1_alt          167292 30 +    284869 CTAGAATGGGATGTATACAGCTGGCCTGTG
s panTro5.chrX                   155219381 30 - 155549662 CTAGAATGGGATGTATACAGCTGGCCTGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79950 30 -    177848 CTAGAATGGGATGTATACAGCTGGCCTGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237752 30 +    417917 CTAGAATGGAGGATGAACAGCTGGCCTGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20506 30 +     35312 CTAGAGTGGGATGTATACAGCTGGCCTGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299109 30 + 180051392 CTAGACTGGGATGTATACAGTTGGCCTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48661 30 -     71016 CTAGACTGGGATGTATACAGTTGGCCTGTG
i macFas5.chrUn_KE146020         I 4 C 0
s cerAty1.NW_012001098v1            205572 30 -   1025902 CTAGACTGGGATGTATACAGCCAGCCTGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159606 29 -    811265 CTAGACTGGGATGTATACAG-CAGCCTGTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144673 30 -    350446 CTAGACTGGGATGTATACAGTTGGCCTGTG
i manLeu1.NW_012108508v1         I 4 I 16
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M

a score=12762.000000
s hg38.chrX_KI270880v1_alt          167322 5 +    284869 GTCTC
s panTro5.chrX                   155219411 5 - 155549662 GTCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79980 5 -    177848 GTCTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237782 5 +    417917 GTCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20536 5 +     35312 GTCTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299139 5 + 180051392 ATCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48691 5 -     71016 ATCCC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            205602 5 -   1025902 GTTTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159635 5 -    811265 GTCTC
i chlSab2.chrUn_KE147541v1       C 0 I 159
e manLeu1.NW_012108508v1            144703 16 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M

a score=3000.000000
s hg38.chrX_KI270880v1_alt          167327 3 +    284869 TCC
s panTro5.chrX                   155219416 3 - 155549662 TCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79985 3 -    177848 TCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237787 3 +    417917 TCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20541 3 +     35312 TCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299144 1 + 180051392 --C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48696 1 -     71016 --C
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            205607 1 -   1025902 --T
i cerAty1.NW_012001098v1         C 0 I 249
s chlSab2.chrUn_KE147541v1          159799 3 -    811265 TCT
i chlSab2.chrUn_KE147541v1       I 159 C 0
e manLeu1.NW_012108508v1            144703 16 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            295355 4910 +  25972781 M

a score=9463.000000
s hg38.chrX_KI270880v1_alt          167330 5 +    284869 CTCCC
s panTro5.chrX                   155219419 5 - 155549662 CTCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79988 4 -    177848 CT-CC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237790 5 +    417917 CTCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20544 5 +     35312 CTCCC
i nomLeu3.chrX_GL398042_1_random C 0 I 43
s rheMac8.chr6                   143299145 5 + 180051392 CTCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48697 5 -     71016 CTCCC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300267 5 +  25972781 CTCCC
i macNem1.NW_012017243v1         M 4910 C 0
s chlSab2.chrUn_KE147541v1          159802 3 -    811265 --TTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144703 16 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=86480.000000
s hg38.chrX_KI270880v1_alt          167335 38 +    284869 TAGAGTGAGATGTATACGGTTGGCCTGCAGTCTGTCTT
s panTro5.chrX                   155219424 38 - 155549662 TAGAGTGAGATGTATACAGTTGGCCTGCGGTCTGTCTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       79992 38 -    177848 TAGAGTGAGATGTATACGGTTGGCCTGCGGTCTGTCTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237795 38 +    417917 TAGAGTGACATGTATACGGTTGGCCTGCGGTCTGTCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20592 38 +     35312 TAAAGTGGTATCTATACAGTCGGCCTGTGGTCTCTCTC
i nomLeu3.chrX_GL398042_1_random I 43 C 0
s rheMac8.chr6                   143299150 38 + 180051392 TAGACTGGGATGTATACAGTTGGCCTGTGATCCCCCTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48702 38 -     71016 TAGACTGGGATGTATACAGTTGGCCTGTGATCCCCCTC
i macFas5.chrUn_KE146020         C 0 I 40
s macNem1.NW_012017243v1            300272 38 +  25972781 TAGAGTGGAATGTATACAGCCGGCCTGTGGTCTCCGTC
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159805 37 -    811265 TAGAGAAGGATGTATACAG-CAGCCTGTGGTCTCCCTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144703 16 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=10074.000000
s hg38.chrX_KI270880v1_alt          167373 7 +    284869 TCTAGTG
s panTro5.chrX                   155219462 7 - 155549662 TCTAGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80030 7 -    177848 TCTAGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237833 7 +    417917 GTCAGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20630 7 +     35312 TCTAGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299188 7 + 180051392 CCTAGAC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48780 7 -     71016 CCTAGAC
i macFas5.chrUn_KE146020         I 40 C 0
s macNem1.NW_012017243v1            300310 7 +  25972781 TCTAGTG
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159842 7 -    811265 CCTAGAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144703 16 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=98023.000000
s hg38.chrX_KI270880v1_alt          167380 35 +    284869 TGGGATGTATACAGCTGGTC-TGTTGTCTCCCTCT-G
s panTro5.chrX                   155219469 35 - 155549662 TGGGATGTATACAGCTGGCC-TGTTGTCTCCCTCT-G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80037 35 -    177848 TGGGATGTATACAGCTGGCC-TGTTGTCTCCCTCT-G
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237840 37 +    417917 TGGGATGTATACAGCTGGCCTTGTTGTCTCCCTCTCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20637 35 +     35312 TAGGATGTATACAATTGGCC-TGTGGTCTCTCCCT-G
i nomLeu3.chrX_GL398042_1_random C 0 T 123
s rheMac8.chr6                   143299195 35 + 180051392 TGGGATGTATACAGTTGGTC-TGTGATCCCCCTCC-C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48787 35 -     71016 TGGGATGTATACAGTTGGCC-TGTGATACTCCTCC-C
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300317 35 +  25972781 TGGGATGTATACAGTCAGCC-TGTGATCTTTCTCT-G
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159849 35 -    811265 TGGGATGTATACAGTCGGCC-TGTGGTCGTTCTCC-G
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144719 34 -    350446 TGGGATGTATACAG-CAGCC-TGTAGTCTCCCTCC-C
i manLeu1.NW_012108508v1         I 16 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=95106.000000
s hg38.chrX_KI270880v1_alt          167415 36 +    284869 TAGAGTGGGATGTATACAGC--CGGCCTGCGGTTTCTT
s panTro5.chrX                   155219504 36 - 155549662 TAGAGTGGGATGTATACAGC--CGGCCTGCGGTTTCTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80072 36 -    177848 TAGAGTGGGATGTATACAGC--CGGCCTGCGGTTTCTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237877 34 +    417917 TAGAGTGGGATGTATACAGC--CAG-CTGTGGTCTC-T
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20549 36 +     35312 TAGAGTGGGGTGTATACAGC--CAGCCTGCAGTTTCTT
i nomLeu3.chrX_GL398042_1_random T 123 C 0
s rheMac8.chr6                   143299230 36 + 180051392 TAGACTGGGATGTATACAGT--TGGCCTGTGATCCCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48822 36 -     71016 TAGACTGGGATGTATACAGT--TGGCCTGTGATACCCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300352 38 +  25972781 TAGAGTGGGATGTATACAGCTGTGGCCTGTGGTCTCCG
i macNem1.NW_012017243v1         C 0 T 124
s chlSab2.chrUn_KE147541v1          159884 34 -    811265 TAGAGTGGGATGTATACAGT--CGGCCTGTGATCTC--
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144753 33 -    350446 AGGAGTGGGATGTATACAG---CAGCCTGTGGTCTC--
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=7497.000000
s hg38.chrX_KI270880v1_alt          167451 2 +    284869 TC
s panTro5.chrX                   155219540 2 - 155549662 TC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80108 2 -    177848 TC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237911 2 +    417917 TC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20585 2 +     35312 TC
i nomLeu3.chrX_GL398042_1_random C 0 I 1
s rheMac8.chr6                   143299266 2 + 180051392 TC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48858 2 -     71016 TC
i macFas5.chrUn_KE146020         C 0 T 120
s macNem1.NW_012017243v1            300266 2 +  25972781 TC
i macNem1.NW_012017243v1         T 124 C 0
s chlSab2.chrUn_KE147541v1          159918 2 -    811265 CC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144786 2 -    350446 TC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=2439.000000
s hg38.chrX_KI270880v1_alt          167453 2 +    284869 TT
s panTro5.chrX                   155219542 2 - 155549662 TT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80110 2 -    177848 TT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237913 2 +    417917 CT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20588 2 +     35312 TT
i nomLeu3.chrX_GL398042_1_random I 1 C 0
s macNem1.NW_012017243v1            300268 2 +  25972781 TC
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159920 2 -    811265 TC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144788 2 -    350446 TC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143299268 0 + 180051392 C
e macFas5.chrUn_KE146020             48860 120 -     71016 T

a score=9000.000000
s hg38.chrX_KI270880v1_alt          167455 2 +    284869 CC
s panTro5.chrX                   155219544 2 - 155549662 CC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80112 2 -    177848 CC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237915 2 +    417917 CC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20590 2 +     35312 CC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299268 2 + 180051392 CC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48740 2 -     71016 CC
i macFas5.chrUn_KE146020         T 120 C 0
s macNem1.NW_012017243v1            300270 2 +  25972781 CC
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159922 2 -    811265 CC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144790 2 -    350446 CC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205608 249 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=10010.000000
s hg38.chrX_KI270880v1_alt          167457 2 +    284869 TA
s panTro5.chrX                   155219546 2 - 155549662 TA
i panTro5.chrX                   C 0 I 67
s panPan2.chrUn_NW_014024190v1       80114 2 -    177848 TA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237917 2 +    417917 TA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20592 2 +     35312 TA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299270 2 + 180051392 TA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48742 2 -     71016 TA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300272 2 +  25972781 TA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205857 2 -   1025902 TA
i cerAty1.NW_012001098v1         I 249 C 0
s chlSab2.chrUn_KE147541v1          159924 2 -    811265 TA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144792 2 -    350446 TA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=112565.000000
s hg38.chrX_KI270880v1_alt          167459 27 +    284869 GAGTGGGATGTATACAGCCGGCCTGTG
s panTro5.chrX                      320492 27 + 155549662 GAGTGGGATGTATACAGCCGGCCTGTG
i panTro5.chrX                   I 375 I 14556
s panPan2.chrUn_NW_014024190v1       80116 27 -    177848 GAGTGGGATGTATACAGCCGGCCTATG
i panPan2.chrUn_NW_014024190v1   C 0 I 40
s gorGor5.CYUI01015925v1            237919 26 +    417917 -GATGGGATGTATACAGCTGACCTGTG
i gorGor5.CYUI01015925v1         C 0 I 2
s nomLeu3.chrX_GL398042_1_random     20594 27 +     35312 AAGTGGTATCTATACAGTCGGCCTGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299272 27 + 180051392 GACTGGGATGTATACAGTTGGCCTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48744 27 -     71016 GACTGGGATGTATACAGTTGGCCTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300274 27 +  25972781 GAGTGGAATGTATACAGCCGGCCTGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205859 27 -   1025902 GAGTGGGATGTATACAGCCAGCCTGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159926 27 -    811265 GAGTGGGATGTATACAGCCAGCCTGTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144794 27 -    350446 GACTGGAATGTATACAGTCAGTCTGTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=107522.000000
s hg38.chrX_KI270880v1_alt          167486 30 +    284869 GTCTGTCTCTCTAGTGTGGGATGTATACAG
s panTro5.chrX                   155219615 30 - 155549662 GTCTGTCTCTCTAGTGTGGGATGTATACAG
i panTro5.chrX                   I 67 C 0
s panPan2.chrUn_NW_014024190v1       80183 30 -    177848 GTCTGTCTCTCTAGTGTGGGATGTATACAG
i panPan2.chrUn_NW_014024190v1   I 40 C 0
s gorGor5.CYUI01015925v1            237947 29 +    417917 CTCTTCCTTCCTAGTGT-GGATGTATACAG
i gorGor5.CYUI01015925v1         I 2 C 0
s nomLeu3.chrX_GL398042_1_random     20621 30 +     35312 GTCTCTCTCTCTAGAGTAGGATGTATACAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299299 30 + 180051392 ATACCCCTCCCTAGACTGGGATGTATACAG
i rheMac8.chr6                   C 0 I 39
s macFas5.chrUn_KE146020             48771 30 -     71016 ATCCCCCTCCCTAGACTGGGATGTATACAG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300301 30 +  25972781 GTCTCCGTCTCTAGTGTGGGATGTATACAG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205886 30 -   1025902 GTCTCCGTCTCTAGTGTGGGATGTATACAG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159953 30 -    811265 GTCTCCGTCTCTAGTGTGGGATGTATACAG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144821 30 -    350446 ATCCGCCTCCCTAGACTGGGATGTATACAG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=3785.000000
s hg38.chrX_KI270880v1_alt          167516 1 +    284869 T
s panTro5.chrX                   155219645 1 - 155549662 T
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80213 1 -    177848 T
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237976 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20651 1 +     35312 T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299368 1 + 180051392 T
i rheMac8.chr6                   I 39 C 0
s macFas5.chrUn_KE146020             48801 1 -     71016 T
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300331 1 +  25972781 T
i macNem1.NW_012017243v1         C 0 I 121
s cerAty1.NW_012001098v1            205916 1 -   1025902 T
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159983 1 -    811265 T
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144851 1 -    350446 T
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=64336.000000
s hg38.chrX_KI270880v1_alt          167517 22 +    284869 TGGCCTGTGGTGTTTCTCCCTA
s panTro5.chrX                   155219646 22 - 155549662 TGGCCTGTGGTGTTTCTCCCTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80214 22 -    177848 TGGCCTGTGGTGTTTCTCCCTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237977 17 +    417917 TGGCCTGTGGCCTCTCT-----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20652 22 +     35312 TGGCCTGTGGTCTCTCCCTGTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299369 22 + 180051392 CGGCCTGTGGTCGTTCTCCATA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48802 22 -     71016 TGGCCTGTGATACTCCTCCCTA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300453 22 +  25972781 CGGCCTGTGGTCGTTCTCCGTA
i macNem1.NW_012017243v1         I 121 C 0
s cerAty1.NW_012001098v1            205917 22 -   1025902 TGGCCTGTGATATTTCTCTATA
i cerAty1.NW_012001098v1         C 0 I 37
s chlSab2.chrUn_KE147541v1          159984 21 -    811265 TGGCCTGTGATC-CCCTCCCTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144852 22 -    350446 CGGCCTGTGGTCTCCCTCCCTA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=43748.000000
s hg38.chrX_KI270880v1_alt          167539 17 +    284869 GAGGGGGATGTATATAG
s panTro5.chrX                   155219668 17 - 155549662 GAGGGGGATGTATATAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80236 17 -    177848 GAGGGGGATGTATATAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20674 17 +     35312 GAGTGAGATGTATACAG
i nomLeu3.chrX_GL398042_1_random C 0 M 100
s rheMac8.chr6                   143299391 17 + 180051392 GAGTGGGATGTATACAG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48824 17 -     71016 GACTGGGATGTATACAG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300475 17 +  25972781 GAGTGTGATGTATACAG
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160005 17 -    811265 GACTGGGATGTATACAG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144874 17 -    350446 GACTGGCATGTATACAG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205939 37 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            237994  0 +    417917 C

a score=22274.000000
s hg38.chrX_KI270880v1_alt          167556 13 +    284869 TCAGCCCGTGGTT
s panTro5.chrX                   155219685 13 - 155549662 TCGGCCCGCGGTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80253 13 -    177848 TCGGCCCGCGGTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s rheMac8.chr6                   143299408 13 + 180051392 TCGGCCTGTGGTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48841 13 -     71016 TTGGCCTGTGATA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300492 12 +  25972781 -CAGCCTGTGGTC
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160022 12 -    811265 -CAGCCTGTGATC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144891 12 -    350446 -CAGCCTGTGGTC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     20691 100 +     35312 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205939 37 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            237994  0 +    417917 C

a score=7279.000000
s hg38.chrX_KI270880v1_alt          167569 9 +    284869 TCTTTCTTC
s panTro5.chrX                   155219698 9 - 155549662 TCTTTCTTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80266 9 -    177848 TCTTTCTTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20791 9 +     35312 TCTTTCTCC
i nomLeu3.chrX_GL398042_1_random M 100 C 0
s rheMac8.chr6                   143299421 7 + 180051392 TCTCTCC--
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48854 7 -     71016 CCCTTCC--
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300504 7 +  25972781 TCCCTCC--
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160034 7 -    811265 TCCCTCC--
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144903 7 -    350446 TCTCTCC--
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            205939 37 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            237994 0 +    417917 C

a score=8344.000000
s hg38.chrX_KI270880v1_alt          167578 5 +    284869 CTAGT
s panTro5.chrX                   155219707 5 - 155549662 CTACT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80275 5 -    177848 CTACT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237994 5 +    417917 CTAGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20800 5 +     35312 GTAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299428 5 + 180051392 CTAGA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48861 5 -     71016 CTAGA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300511 5 +  25972781 CAGGC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205976 5 -   1025902 CTAAT
i cerAty1.NW_012001098v1         I 37 C 0
s chlSab2.chrUn_KE147541v1          160041 5 -    811265 CTAGA
i chlSab2.chrUn_KE147541v1       C 0 T 396
s manLeu1.NW_012108508v1            144910 5 -    350446 CTAGA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=68830.000000
s hg38.chrX_KI270880v1_alt          167583 15 +    284869 GTGGGATGTATACAG
s panTro5.chrX                   155219712 15 - 155549662 GTGGGATGTATACAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80280 15 -    177848 GTGGGATGGATACAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            237999 15 +    417917 GTGGGATGTATACAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20805 15 +     35312 GTGGGAGGTATACAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299433 15 + 180051392 GTGGGATGTATACAG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48866 15 -     71016 CTGGGATGTATACAG
i macFas5.chrUn_KE146020         C 0 I 118
s macNem1.NW_012017243v1            300516 15 +  25972781 GTGGGCTGTATACAG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205981 15 -   1025902 GTGGAATGTATACAG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159650 15 -    811265 GTGGGATGTATACAG
i chlSab2.chrUn_KE147541v1       T 396 C 0
s manLeu1.NW_012108508v1            144915 15 -    350446 GTGGGATGTATACAG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=136687.000000
s hg38.chrX_KI270880v1_alt          167598 38 +    284869 CCGGCCTATGGTCTGT--CTCTCTAGTGTGGGATGTATAC
s panTro5.chrX                   155219727 38 - 155549662 CCGGCCTATGGTCTGT--CTCTCTAGTGTGGGATGTATAC
i panTro5.chrX                   C 0 I 3
s panPan2.chrUn_NW_014024190v1       80295 38 -    177848 CCGGCCTATGGTCTGT--CTCTCTAGTGTGGGATGTATAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238014 40 +    417917 TTGGCCTGTGGTCTCTTCCTCCCTAGTGTGGGATGTATAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20820 38 +     35312 CCAGCCTATGGTCTTT--CTCCATACAGTGGGATGTATAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299448 38 + 180051392 TCGGCCTGTGGTCGTT--CTCCATAGAGTGGGATGTATAC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48999 38 -     71016 TCGGCCTGTGGTCGTT--CTCCATAGAGTGGGATGTATAC
i macFas5.chrUn_KE146020         I 118 C 0
s macNem1.NW_012017243v1            300531 38 +  25972781 CTGGCCTGTGGTCTCC--GTCTCTAGTGTGGGATGTATAC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205996 38 -   1025902 TTGGCCTGTGATCCCC--CTCCCTAGACTGGGATGTATAC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159665 38 -    811265 CTGGCCTATGGTCTCC--GTCTCTAATGTGGAATGTATAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144930 38 -    350446 TCGGCCTGTGGTTGTT--CTCTGTAGAGTGGGATGTATAC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=10156.000000
s hg38.chrX_KI270880v1_alt          167636 3 +    284869 AGC
s panTro5.chrX                      335075 3 + 155549662 AGC
i panTro5.chrX                   I 14556 C 0
s panPan2.chrUn_NW_014024190v1       80333 3 -    177848 AGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238054 3 +    417917 AGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20858 3 +     35312 AGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299486 3 + 180051392 AGG
i rheMac8.chr6                   C 0 T 160
s macFas5.chrUn_KE146020             49037 3 -     71016 AGG
i macFas5.chrUn_KE146020         C 0 T 159
s macNem1.NW_012017243v1            300569 3 +  25972781 AGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206034 3 -   1025902 AGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159703 3 -    811265 AGT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144968 3 -    350446 AGC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=72863.000000
s hg38.chrX_KI270880v1_alt          167639 19 +    284869 TGGCCTGTGGCCTCCCTCT
s panTro5.chrX                   155219768 19 - 155549662 TGGCCTGTGGTGTTTCTCC
i panTro5.chrX                   I 3 C 0
s panPan2.chrUn_NW_014024190v1       80336 19 -    177848 TGGCCTGTGGCCTCCCTCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238057 19 +    417917 TGGCCTGTGGCCTCCCTCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20861 19 +     35312 TGGCCTGGGGTCTTTCTCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299329 19 + 180051392 TAGCCTGTGGTCTCTCTCC
i rheMac8.chr6                   T 160 C 0
s macFas5.chrUn_KE146020             48881 19 -     71016 TAGCCTGTGGTCTCTCTCC
i macFas5.chrUn_KE146020         T 159 C 0
s macNem1.NW_012017243v1            300572 19 +  25972781 CGGCCTGTGGTCTCCCTCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206037 18 -   1025902 -AGCCTGTGGTCTCCCTCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159706 19 -    811265 CAGCCTGTGATCCCCCTCC
i chlSab2.chrUn_KE147541v1       C 0 T 159
s manLeu1.NW_012108508v1            144971 19 -    350446 TGGCCTGTGGTCTCCGTCT
i manLeu1.NW_012108508v1         C 0 T 317
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=91954.000000
s hg38.chrX_KI270880v1_alt          167658 22 +    284869 CTAGAGTGGGA--TGTATACAGTT
s panTro5.chrX                   155219787 22 - 155549662 CTAGAGGGGGA--TGTATATAGTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80355 22 -    177848 CTAGAGCGGGA--TGTATACAGTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238076 24 +    417917 CTAGAGTGGGATGTGTATACAGTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20880 22 +     35312 GTAGAGTGGAA--TGTATACAGTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299348 22 + 180051392 CTAGAGTGGGA--TGTATACAGTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48900 22 -     71016 CTAGAGTGGGA--TGTATACAGTC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300591 22 +  25972781 CTAGAGTGGGA--TGTATACAGTT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206055 22 -   1025902 CTAGACTGGGA--TGTATACAGCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159566 22 -    811265 CTAGACTGGGA--TGTATACAGTT
i chlSab2.chrUn_KE147541v1       T 159 I 158
s manLeu1.NW_012108508v1            144673 22 -    350446 CTAGACTGGGA--TGTATACAGTT
i manLeu1.NW_012108508v1         T 317 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=130550.000000
s hg38.chrX_KI270880v1_alt          167680 41 +    284869 GGTCTGTGGTCTCTTCCTCCCTAGAGTGGAATGTATACAGC
s panTro5.chrX                   155219809 41 - 155549662 GGCCCGCGGTTTCTTTCTTCCTACTGTGGGATGGATACAGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80377 41 -    177848 GGTCTGTGGTCTCTTCCTCCCTAGAGTGGGATGTATACAGC
i panPan2.chrUn_NW_014024190v1   C 0 T 122
s gorGor5.CYUI01015925v1            238100 40 +    417917 GGTCTGTGGTCTCTTCCTTCCTAGAGTGG-ATGTATACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20902 39 +     35312 GGCCTGTGG--TCTTTCTCCGTAGAGTGGGATGTATACAGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299370 39 + 180051392 GGCCTGTGG--TCGTTCTCCATAGAGTGGGATGTATACAGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48922 39 -     71016 GGCCTGTGG--TCGTTCTCCATAGAGTGGGATGTATACAGC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300613 37 +  25972781 GGCCTGTGG--T--GTCTCCCTAGACTGGGATGTATACACC
i macNem1.NW_012017243v1         C 0 T 318
s cerAty1.NW_012001098v1            206077 37 -   1025902 AGCCTGTGG--T--GTCTCCCTAGAGTGGGATGTATACAGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159746 39 -    811265 AGCCTGTGG--TCTCTCTCCTTAGAGTGGGATGTATACAGC
i chlSab2.chrUn_KE147541v1       I 158 C 0
s manLeu1.NW_012108508v1            144695 39 -    350446 GGCCTGTGA--TCCCCCTCCCTAGACTGGGATGTATACAGC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=808.000000
s hg38.chrX_KI270880v1_alt          167721 1 +    284869 C
s panTro5.chrX                   155219850 1 - 155549662 C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80296 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   T 122 C 0
s nomLeu3.chrX_GL398042_1_random     20941 1 +     35312 T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299409 1 + 180051392 C
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            300332 1 +  25972781 C
i macNem1.NW_012017243v1         T 318 C 0
s cerAty1.NW_012001098v1            206114 1 -   1025902 T
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159785 1 -    811265 T
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144734 0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macFas5.chrUn_KE146020             48961 0 -     71016 C
e gorGor5.CYUI01015925v1            238140 0 +    417917 C

a score=52392.000000
s hg38.chrX_KI270880v1_alt          167722 12 +    284869 GGCCTGTGGTCT
s panTro5.chrX                   155219851 12 - 155549662 GGCCTATGGTCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80297 12 -    177848 GGCCTATGGTCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238140 12 +    417917 GGCCTGTGGTCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20942 12 +     35312 GGCCTGTGGTCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299410 12 + 180051392 GGCCTGTGGTCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48961 12 -     71016 AGCCTGTGGTCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300333 12 +  25972781 AGCCTGTGATCT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206115 12 -   1025902 GGCCTGTGGTGT
i cerAty1.NW_012001098v1         C 0 I 37
s chlSab2.chrUn_KE147541v1          159786 12 -    811265 GGCCTGTGGTCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144734 12 -    350446 AGCCTGTAGTCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=12974.000000
s hg38.chrX_KI270880v1_alt          167734 4 +    284869 CTCT
s panTro5.chrX                   155219863 4 - 155549662 GTCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80309 4 -    177848 GTCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238152 4 +    417917 CTCT
i gorGor5.CYUI01015925v1         C 0 I 49
s nomLeu3.chrX_GL398042_1_random     20954 4 +     35312 TTCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299422 4 + 180051392 CTCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48973 4 -     71016 CTCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300345 4 +  25972781 TTCT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206164 4 -   1025902 CCCT
i cerAty1.NW_012001098v1         I 37 C 0
s chlSab2.chrUn_KE147541v1          159798 4 -    811265 CTCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144746 4 -    350446 CCCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=17560.000000
s hg38.chrX_KI270880v1_alt          167738 10 +    284869 TTCTAGAGAA
s panTro5.chrX                   155219867 10 - 155549662 CTCTAGTGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80313 10 -    177848 CTCTAGTGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     20958 10 +     35312 CCGTAAAGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299426 10 + 180051392 CCCTAGAGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48977 10 -     71016 CCCTAGAGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300349 10 +  25972781 CTGTAGAGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206168 10 -   1025902 CCCAGGCGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159802 10 -    811265 TTCTAGAGAA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144750 10 -    350446 CCCAGGAGTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            238156 49 +    417917 I

a score=181626.000000
s hg38.chrX_KI270880v1_alt          167748 53 +    284869 GGATGTATACAGC--CGGCCTGTGGTCTCCCTCCCAGGAGTGGAATGTATACAGT
s panTro5.chrX                   155219877 53 - 155549662 GGATGTATACAGC--TGGCCTGTGGCCTCCCTCTCTAGAGCGGGATGTATACAGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80323 53 -    177848 GGATGTATACAGC--TGGCCTGTGGCCTCCCTCTCTAGAGCGGGATGTATACAGT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238205 49 +    417917 GGATGTATACAGC--CGGCCTGTGGTCTCTCTCT----AGTGATATGTATACAGT
i gorGor5.CYUI01015925v1         I 49 C 0
s nomLeu3.chrX_GL398042_1_random     20968 48 +     35312 GGATGTATACAGC--CATC-----GTCTTTCTCCGTACAGTGGGATGTATACAGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299436 53 + 180051392 GGATGTATACAGT--CGGCCTGTGGTCGTTCTCCATAGAGTGGGATGTATACAGG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             48987 53 -     71016 GGATGTATACAGT--CGGCCTGTGGTCGTTCTCCATAGAGTGGGATGTATACAGG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300359 55 +  25972781 GGATGTATACAGCTGTGGCCTGTGGTCTCCGTCTCTAATGTGGAATGTATACAGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206178 53 -   1025902 GGATGTATACAGC--TGGCCTGTGGTCTCTGTCTCTAATGTGGAATGTATACAGT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159812 52 -    811265 GGATGTATACAG---CAGCCTGTGGTCTCCCTCCCTAGACTGGGATGTATACAGT
i chlSab2.chrUn_KE147541v1       C 0 T 292
s manLeu1.NW_012108508v1            144760 52 -    350446 GGATGTATACAG---CAGCCTGTGGTCTCTCTCCCTAGACTGGAATGTATACAGT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=20314.000000
s hg38.chrX_KI270880v1_alt          167801 11 +    284869 C-GGCCTGCGGT
s panTro5.chrX                   155219930 11 - 155549662 T-GGTCTGTGGT
i panTro5.chrX                   C 0 I 122
s panPan2.chrUn_NW_014024190v1       80376 11 -    177848 T-GGTCTGTGGT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238254 12 +    417917 TGGGCCTGTGGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21016 10 +     35312 T--GCCTTTGAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299489 11 + 180051392 -TGGCCTGTGGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49040 11 -     71016 -TGGCCTGTGGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300414 11 +  25972781 -TGGCCTGTGAT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206231 11 -   1025902 -CGGCCTGTGAT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            144812 11 -    350446 -CAGTCTGTGAT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159864 292 -    811265 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=4500.000000
s hg38.chrX_KI270880v1_alt          167812 1 +    284869 C
s panTro5.chrX                   155220063 1 - 155549662 C
i panTro5.chrX                   I 122 C 0
s panPan2.chrUn_NW_014024190v1       80387 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238266 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21026 1 +     35312 C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299500 1 + 180051392 C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49051 1 -     71016 C
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300425 1 +  25972781 C
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206242 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            144823 1 -    350446 C
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159864 292 -    811265 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=1577.000000
s hg38.chrX_KI270880v1_alt          167813 1 +    284869 T
s panTro5.chrX                   155220064 1 - 155549662 T
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80388 1 -    177848 T
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238267 1 +    417917 T
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21027 1 +     35312 T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299501 1 + 180051392 T
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49052 1 -     71016 T
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206243 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            144824 1 -    350446 C
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159864 292 -    811265 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300426 0 +  25972781 C

a score=2475.000000
s hg38.chrX_KI270880v1_alt          167814 1 +    284869 C
s panTro5.chrX                   155220065 1 - 155549662 C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80389 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 T 3
s gorGor5.CYUI01015925v1            238268 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21028 1 +     35312 C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299502 1 + 180051392 C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49053 1 -     71016 C
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300426 1 +  25972781 C
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206244 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            144825 1 -    350446 G
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159864 292 -    811265 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=17775.000000
s hg38.chrX_KI270880v1_alt          167815 11 +    284869 CCTCCCAGGGG
s panTro5.chrX                   155220066 11 - 155549662 CCTCCCTAGAG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238269 11 +    417917 CCTCCCTAGAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21029 11 +     35312 TCTGTCTAGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299503 11 + 180051392 CATCTCTAATG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49054 11 -     71016 CATCTCTAATG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300427 11 +  25972781 CCTCCCTAGAC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206245 11 -   1025902 CCTCCCTAGAC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            144826 11 -    350446 CCTCCCTAGAC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159864 292 -    811265 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390  3 -    177848 T

a score=84792.000000
s hg38.chrX_KI270880v1_alt          167826 24 +    284869 TGGGATGTATACAGCCGGCCTGTG
s panTro5.chrX                   155220077 24 - 155549662 TGATATGTATACAGTCGGCCTGTG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238280 24 +    417917 TGATATGTATACAGTCGGCCTGTG
i gorGor5.CYUI01015925v1         C 0 I 79
s nomLeu3.chrX_GL398042_1_random     21040 24 +     35312 TGGGATGTATACAGCTGGCCTGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299514 24 + 180051392 TGGAATGTATACAGTCGGCCTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49065 24 -     71016 TGGAATGTATACAGTCGGCCTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300438 24 +  25972781 TGGGATGTATACAGTCGGCCTGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206256 23 -   1025902 TGGGATGTATACAG-CAGCCTGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159572 24 -    811265 TGGGATGTATACAGTTGGCCTGTG
i chlSab2.chrUn_KE147541v1       T 292 C 0
s manLeu1.NW_012108508v1            144837 24 -    350446 TGGGATGTATACAGTCGGCCTGTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390  3 -    177848 T

a score=8566.000000
s hg38.chrX_KI270880v1_alt          167850 6 +    284869 GTCTCT
s panTro5.chrX                   155220101 6 - 155549662 GTCTCC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238383 6 +    417917 GTCTCC
i gorGor5.CYUI01015925v1         I 79 C 0
s nomLeu3.chrX_GL398042_1_random     21064 6 +     35312 ATCACT
i nomLeu3.chrX_GL398042_1_random C 0 I 163
s rheMac8.chr6                   143299538 6 + 180051392 ATCCGC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49089 6 -     71016 ATCCGC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300462 6 +  25972781 GTCGTT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206279 6 -   1025902 GTCATT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159596 6 -    811265 ATCCCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144861 6 -    350446 GTCTCC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390 3 -    177848 T

a score=54462.000000
s hg38.chrX_KI270880v1_alt          167856 26 +    284869 CTTTCTAGAGAAGGATGTATACAGC-A
s panTro5.chrX                   155220107 26 - 155549662 CTCCCTAGACTGATATGTATACAGC-A
i panTro5.chrX                   C 0 T 119
s gorGor5.CYUI01015925v1            238389 26 +    417917 CTCCCTAGAGTGATATGTATACAGT-C
i gorGor5.CYUI01015925v1         C 0 I 1
s nomLeu3.chrX_GL398042_1_random     21233  9 +     35312 CTCTATAGA------------------
i nomLeu3.chrX_GL398042_1_random I 163 C 0
s rheMac8.chr6                   143299544 26 + 180051392 CTCCCTAGACTGGGATGTATACAGC-A
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49095 26 -     71016 CTCCCTAGACTGGAATGTATACAGC-A
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300468 26 +  25972781 CTCCGTAGAGTGTGATGTATACAGC-A
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206285 27 -   1025902 CTCTGTAGAGTGGGATGTATACAGCTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159602 26 -    811265 CTCCCTAGACTGGGATGTATACAGC-A
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144867 26 -    350446 CTCCCTAGACTGGCATGTATACAGC-A
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390  3 -    177848 T

a score=21733.000000
s hg38.chrX_KI270880v1_alt          167882 7 +    284869 GCCTGCA
s panTro5.chrX                   155220014 7 - 155549662 GCCTGTG
i panTro5.chrX                   T 119 C 0
s gorGor5.CYUI01015925v1            238416 7 +    417917 GCCTGTG
i gorGor5.CYUI01015925v1         I 1 T 119
s rheMac8.chr6                   143299570 7 + 180051392 GCCTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49121 7 -     71016 GCCTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300494 7 +  25972781 GCCTGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206312 7 -   1025902 GCCTGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159628 7 -    811265 GCCTGTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144893 7 -    350446 GCCTGTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21242 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390 3 -    177848 T

a score=19904.000000
s hg38.chrX_KI270880v1_alt          167889 6 +    284869 GTCTCC
s panTro5.chrX                   155220021 6 - 155549662 GTCTCC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238304 6 +    417917 GTCTCC
i gorGor5.CYUI01015925v1         T 119 C 0
s rheMac8.chr6                   143299577 6 + 180051392 GTCTCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49128 6 -     71016 GTCTCC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300501 6 +  25972781 GTCTCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206319 6 -   1025902 GTCTCC
i cerAty1.NW_012001098v1         C 0 T 198
s chlSab2.chrUn_KE147541v1          159635 6 -    811265 GTCTCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144900 6 -    350446 GTCTCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21242 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390 3 -    177848 T

a score=106233.000000
s hg38.chrX_KI270880v1_alt          167895 34 +    284869 CTCCCAGGAGTGGAATGTATACAGCCGGCCTGTG
s panTro5.chrX                   155220027 34 - 155549662 CTCCCAGGAGTGGGATGTATACAGCCGGCCTGTG
i panTro5.chrX                   C 0 T 120
s gorGor5.CYUI01015925v1            238310 34 +    417917 CTCCCTAGAGTGATATGTATACAGTCGGCCTGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21242 25 +     35312 ---------GTGGGATGTATACAGTTGGCCTGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299583 34 + 180051392 CTCCCAGGCATGGGATGTATACAGTTGGCCTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49134 34 -     71016 CTCCCAGGCATGGGATGTATACAGTTGGCCTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300507 34 +  25972781 CTCCCAGGCGTGGGCTGTATACAGCTGGCCTGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206127 33 -   1025902 CTCCCTAGAGTGGGATGTATACAGC-AGCCTGTG
i cerAty1.NW_012001098v1         T 198 C 0
s chlSab2.chrUn_KE147541v1          159641 34 -    811265 CTCCCAGGAGTGGGATGTATACAGCTGGCCTATG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144906 34 -    350446 CTCCCTAGAGTGGGATGTATACAGTCGGCCTGTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80390  3 -    177848 T

a score=45075.000000
s hg38.chrX_KI270880v1_alt          167929 20 +    284869 CTCTCCCTCCTAGGAGTGAT
s panTro5.chrX                   155219941 20 - 155549662 CTCTTCCTCCCTAGAGTGGG
i panTro5.chrX                   T 120 C 0
s panPan2.chrUn_NW_014024190v1       80387 20 -    177848 CTCTTCCTCCCTAGAGTGGG
i panPan2.chrUn_NW_014024190v1   T 3 C 0
s gorGor5.CYUI01015925v1            238344 19 +    417917 GTCTCCCTCC-TAGAGTGAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21267 20 +     35312 GTCTTTCTCTGTAGAGTGGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299617 20 + 180051392 ATCCTCCTCCCTAGACTGGG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49168 20 -     71016 ATCCTCCTCCCTAGACTGGG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300541 20 +  25972781 GTCTCCGTCTCTAGTGTGGG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206160 20 -   1025902 GCCTCCCTCCCAGGCGTGGG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159675 20 -    811265 GTCTCCGTCTCTAATGTGGA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144940 20 -    350446 GTTGTTCTCTGTAGAGTGGG
i manLeu1.NW_012108508v1         C 0 I 118
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=53015.000000
s hg38.chrX_KI270880v1_alt          167949 11 +    284869 ATGTATACAGC
s panTro5.chrX                   155219961 11 - 155549662 ATGTATACAGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80407 11 -    177848 ATGTATACAGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238363 11 +    417917 ATGTATACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21287 11 +     35312 ATGTATACAGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299637 11 + 180051392 ATGTATACAGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49188 11 -     71016 ATGTATACAGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300561 11 +  25972781 ATGTATACAGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206180 11 -   1025902 ATGTATACAGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159695 11 -    811265 ATGTATACAGT
i chlSab2.chrUn_KE147541v1       C 0 I 158
s manLeu1.NW_012108508v1            145078 11 -    350446 ATGTATACAGC
i manLeu1.NW_012108508v1         I 118 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=67379.000000
s hg38.chrX_KI270880v1_alt          167960 16 +    284869 CGGCCTGTGGTCTCCC
s panTro5.chrX                   155219972 16 - 155549662 CGGCCTGTGTTCTCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80418 16 -    177848 CGGCCTGTGGTCTCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238374 16 +    417917 CGGCCTGTGGTCTCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21298 16 +     35312 TGGCCTATGGTCTTTC
i nomLeu3.chrX_GL398042_1_random C 0 T 244
s rheMac8.chr6                   143299648 16 + 180051392 CGGCCTGTGGTCTCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49199 16 -     71016 CGGCCTGTGGTCTCCC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300572 16 +  25972781 CGGCCTGTGGTCTCCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206191 16 -   1025902 TGGCCTGTGGTCTCTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159864 16 -    811265 CGGCCTGTGGTCGTTC
i chlSab2.chrUn_KE147541v1       I 158 C 0
s manLeu1.NW_012108508v1            145089 16 -    350446 CGGCCTGTGGTCGTTC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=165726.000000
s hg38.chrX_KI270880v1_alt          167976 38 +    284869 TCCCTAGAGTGATATGTATACAGTTGGCCTGTGGTCTC
s panTro5.chrX                   155219988 38 - 155549662 TCCCTAGAGTGATATGTATACAGTCGGCCTGTGGTCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80434 38 -    177848 TCCCTAGAGTGATATGTATACAGTCGGCCTGTGGTCTC
i panPan2.chrUn_NW_014024190v1   C 0 T 80
s gorGor5.CYUI01015925v1            238390 38 +    417917 TCCCTAGAGTGATATGTATACAGTCGGCCTGTGGTCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21070 38 +     35312 TCCCTAAAGTGAGATGTATACAGCTGGCCTGTGGTCTT
i nomLeu3.chrX_GL398042_1_random T 244 C 0
s rheMac8.chr6                   143299664 38 + 180051392 TCCCTAGAGTGGAATGTATACAGCCGGCCTGTGGTCTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49215 38 -     71016 TCCCTAGAGTGGAATGTATACAGCCGGCCTGTGGTCTC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300588 38 +  25972781 TCCCTAGAGTGGGATGTATACAGTTGGCCTGTGGTGTC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206207 38 -   1025902 TCTCTAATGTGGAATGTATACAGTCGGCCTGTGATCCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159880 38 -    811265 TCCGTAGAGTGGGATGTATACAGTCGGCCTGTGATCTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145105 38 -    350446 TCCGTAGAGTGGGATGTATACAGTCGGCCTGTGGTCTC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=23173.000000
s hg38.chrX_KI270880v1_alt          168014 8 +    284869 CCTCCCAG
s panTro5.chrX                   155220026 8 - 155549662 CCTCCCAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80392 8 -    177848 CCTCCCTA
i panPan2.chrUn_NW_014024190v1   T 80 C 0
s gorGor5.CYUI01015925v1            238428 8 +    417917 CCTCCCAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21108 8 +     35312 TCTCTGTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299702 8 + 180051392 CTTCTCTA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49253 8 -     71016 CTTCTCTA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300626 6 +  25972781 --TCCCTA
i macNem1.NW_012017243v1         C 0 T 358
s cerAty1.NW_012001098v1            206245 8 -   1025902 CCTCCCTA
i cerAty1.NW_012001098v1         C 0 T 314
s chlSab2.chrUn_KE147541v1          159918 8 -    811265 CCTCCCTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145143 8 -    350446 CCTCCCTA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=9407.000000
s hg38.chrX_KI270880v1_alt          168022 5 +    284869 GAGTG
s panTro5.chrX                   155220034 5 - 155549662 GAGTG
i panTro5.chrX                   C 0 I 198
s panPan2.chrUn_NW_014024190v1       80400 5 -    177848 GAGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238436 4 +    417917 ATGG-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21116 5 +     35312 AAGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299710 5 + 180051392 GTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49261 5 -     71016 GTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300274 5 +  25972781 GAGTG
i macNem1.NW_012017243v1         T 358 C 0
s cerAty1.NW_012001098v1            205939 5 -   1025902 GAGTG
i cerAty1.NW_012001098v1         T 314 C 0
s chlSab2.chrUn_KE147541v1          159926 5 -    811265 GAGTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145151 5 -    350446 GACTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=130569.000000
s hg38.chrX_KI270880v1_alt          168027 40 +    284869 GGATGTATACAGCCGGCCTGTGGTC---TCTCTTTCTAGAGAA
s panTro5.chrX                   155220237 40 - 155549662 GGATGTATACAGTCGGCCTGTGTTC---TCTTTCCCTAGAGTG
i panTro5.chrX                   I 198 T 238
s panPan2.chrUn_NW_014024190v1       80405 40 -    177848 GGATGTATACAGCCGGCCTGTGGTC---TCCCTCCCTAGAGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238440 35 +    417917 ATATGTATACAGCCGGCCTCTGGTC---TCCCTCAGGA-----
i gorGor5.CYUI01015925v1         C 0 I 1
s nomLeu3.chrX_GL398042_1_random     21121 43 +     35312 GGATGTATACAGCTGGCCTGTGGTCTGGTCCCTGTCTAGAGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299715 40 + 180051392 GGATGTATACAGTTGGCCTGTGATC---TTTCTCTATAGAGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49266 40 -     71016 GGATGTATACAGTTGGCCTGTGATC---TTTCTCTATAGAGTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300279 40 +  25972781 GAATGTATACAGCCGGCCTGTGGTC---TCCGTCTCTAGTGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205944 40 -   1025902 GGATGTATACAGCTGGCCTGTGGTG---TCTGTCTCTAATGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159931 40 -    811265 GGATGTATACAGCCAGCCTGTGGTC---TCCGTCTCTAGTGTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145156 38 -    350446 GGATGTATACAGTCGGCCTGTGGTC---TC--TCTCTAGACTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=112350.000000
s hg38.chrX_KI270880v1_alt          168067 30 +    284869 GGATGTATACAGCCGGCCTGTGGTCTCCCT
s panTro5.chrX                   155220039 30 - 155549662 GGATGTATACAGCCGGCCTGTGGTCTCCCT
i panTro5.chrX                   T 238 C 0
s panPan2.chrUn_NW_014024190v1       80445 30 -    177848 ATATGTATACAGTCGGCCTGTGGTCTCCCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238476 30 +    417917 TGATGTATACAGCCGGCCTGTGATCTCCCT
i gorGor5.CYUI01015925v1         I 1 C 0
s nomLeu3.chrX_GL398042_1_random     21164 29 +     35312 GGATGTATACAGCTGGCCTTTGATC-ACTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299755 30 + 180051392 GGATGTATACAGCTGGCCTGTGGTCTCCGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49306 30 -     71016 GGATGTATACAGCTGGCCTGTGGTCTCCGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300319 30 +  25972781 GGATGTATACAGTCAGCCTGTGATCTTTCT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            205984 30 -   1025902 GAATGTATACAGTTGGCCTGTGATCCCCCT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159971 29 -    811265 GGATGTATACAGTTGGCCTGTGATCCCCT-
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145194 30 -    350446 GGATGTATACAGCCAGCCTGTGGTCTTCCT
i manLeu1.NW_012108508v1         C 0 T 395
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=100518.000000
s hg38.chrX_KI270880v1_alt          168097 30 +    284869 CCCAGGAGTGGGATGTATACAGT--CGGCCTG
s panTro5.chrX                   155220069 30 - 155549662 CCCTAGAGTGATATGTATACAGT--CGGCCTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80475 30 -    177848 CCCAGGAGTGGGATGTATACAGC--CGGCCTG
i panPan2.chrUn_NW_014024190v1   C 0 T 40
s gorGor5.CYUI01015925v1            238506 30 +    417917 CCCAGGAGTGATATGTATACAGT--CGGCCTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21193 30 +     35312 CCCTAGAGTGAGATGTATACAGC--TGGCCTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299785 30 + 180051392 CTCTAATGTGGAATGTATACAGT--TGGCCTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49336 30 -     71016 CTCTAATGTGGAATGTATACAGT--TGGCCTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300349 32 +  25972781 CTGTAGAGTGGGATGTATACAGCTGTGGCCTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206014 29 -   1025902 CCCTAGACTGGGATGTATACAGC---AGCCTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160000 29 -    811265 CCCTAGACTGGGATGTATACAG---CAGCCTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144829 30 -    350446 CCCTAGACTGGGATGTATACAGT--CGGCCTG
i manLeu1.NW_012108508v1         T 395 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=113472.000000
s hg38.chrX_KI270880v1_alt          168127 33 +    284869 CGGTCTCCCTCCC--AGGAGTGGAATGTATACAGC
s panTro5.chrX                   155220099 33 - 155549662 TGGTCTCCCTCCC--TAGACTGATATGTATACAGC
i panTro5.chrX                   C 0 I 238
s panPan2.chrUn_NW_014024190v1       80465 33 -    177848 TGGTCTCCCTCCC--AGGAGTGGGATGTATACAGC
i panPan2.chrUn_NW_014024190v1   T 40 C 0
s gorGor5.CYUI01015925v1            238536 33 +    417917 TGGTCTCCCTCCC--AGGAGTGGGATGTATACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21223 35 +     35312 TGGTTTCTTTCTCTATAGAGTGGGATGTATACAGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299815 32 + 180051392 TGATCCCCCTCCC--TAGACTGGGATGTATACAG-
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49366 32 -     71016 TGATCCCCCTCCC--TAGACTGGAATGTATACAG-
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300381 33 +  25972781 TGGTCTCCGTCTC--TAATGTGGAATGTATACAGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206043 33 -   1025902 TGGTCTCCCTCCC--TAGACTGGGATGTATACAGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160029 33 -    811265 TGATCTCCCTCCC--TAGACTGGGATGTATACAGT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144859 32 -    350446 TGGTCTCCCTCCC--TAGACTGGCATGTATACAG-
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=46611.000000
s hg38.chrX_KI270880v1_alt          168160 10 +    284869 CGGCCTGTGG
s panTro5.chrX                   155220370 10 - 155549662 CGGCCTGTGG
i panTro5.chrX                   I 238 C 0
s panPan2.chrUn_NW_014024190v1       80498 10 -    177848 CGGCCTGTGG
i panPan2.chrUn_NW_014024190v1   C 0 T 116
s gorGor5.CYUI01015925v1            238569 10 +    417917 CGGCCTGTGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21258 10 +     35312 TGGCCTGTGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299847 10 + 180051392 CAGCCTGTGG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49398 10 -     71016 CAGCCTGTGG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300414 10 +  25972781 TGGCCTGTGA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206076 10 -   1025902 CAGCCTGTGG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160062 10 -    811265 CGGCCTGTGG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144891 10 -    350446 CAGCCTGTGG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=83254.000000
s hg38.chrX_KI270880v1_alt          168170 31 +    284869 TCTCTCTTTCTAGAGAAGGATGTATACAGCC
s panTro5.chrX                   155220380 31 - 155549662 TCTCTCTTTCTAGAGAAGGATGTATACAGCC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238579 30 +    417917 TCTCTCTTTCTAGAGAAGGATGTATACAGC-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21268 31 +     35312 TCTTTCTCTGTAGAGTGGGATGTATACAGTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299857 31 + 180051392 TCATTCTCTGTAGAGTGGGATGTATACAGCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49408 31 -     71016 TCGTTCTCTGTAGAGTGGGATGTATACAGCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300424 30 +  25972781 TC-CCCTCCCTAGACTGGGATGTATACAGTC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206086 29 -   1025902 T--GTCTCCCTAGAGTGGGATGTATACAGCT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160072 31 -    811265 TCATTCTCCGTAGAGTGGGATGTATACAGCT
i chlSab2.chrUn_KE147541v1       C 0 T 515
s manLeu1.NW_012108508v1            144901 31 -    350446 TCTCTCTCCCTAGAGTGGGATGTATACAGTC
i manLeu1.NW_012108508v1         C 0 T 198
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=51705.000000
s hg38.chrX_KI270880v1_alt          168201 26 +    284869 GGCCTGTGGTCTCCCTCCCAGGAGTG
s panTro5.chrX                   155220411 26 - 155549662 GGCCTGTGGTCTCCCTCCCAGGAGTG
i panTro5.chrX                   C 0 T 120
s nomLeu3.chrX_GL398042_1_random     21299 26 +     35312 GGCCTATGGTCTTTCTCCGTAGAGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299888 24 + 180051392 GGCCTGTGGT--GTCTCCCTAGACTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49439 24 -     71016 GGCCTGTGGT--GTCTCCCTAGACTG
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300454 26 +  25972781 GGCCTGTGGTCGTTCTCCGTAGAGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206115 24 -   1025902 GGCCTGTGGT--GTCTCCCTAGAGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159588 26 -    811265 GGCCTGTGATCCCCCTCCCTAGACTG
i chlSab2.chrUn_KE147541v1       T 515 C 0
s manLeu1.NW_012108508v1            144734 26 -    350446 AGCCTGTAGTCTCCCTCCCAGGAGTG
i manLeu1.NW_012108508v1         T 198 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            238609  0 +    417917 C
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=235849.000000
s hg38.chrX_KI270880v1_alt          168227 74 +    284869 GGATGTATACAG-CAGCCTGTGGTCTCCCTCCCAGGAGTGGAATGTATACAGCCGGCCTGTGGTCTCTCTTTCTA
s panTro5.chrX                   155220317 75 - 155549662 ATATGTATACAGTTGGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCCGGCCTGTGGTCTCTCTTTCTA
i panTro5.chrX                   T 120 C 0
s gorGor5.CYUI01015925v1            238609 61 +    417917 --------------AGCCTGCGGTCTCCCTCCCAGCAGTGGGATGTATACAGCCGGCCTGTGGTCTCTCTTTCTA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21325 75 +     35312 GGATGTATACAGCCGGCCTGTGGTCTTTCTCCGTAGAGTGGGATGTATACAGCTGGCCTGTGGTCTCTCTCTCTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143299912 74 + 180051392 GGATGTATACAG-CAGCCTGTGGCCTCCCTCCCAGGCGTGGGATGTATACAGCTGGCCTGTGGTCTCTGTCTCTA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49463 74 -     71016 GGATGTATACAG-CAGCCTGTGGCCTCCCTCCCAGGTGTGGGATGTATACAGCTGGCCTGTGGTCTCTGTCTCTA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300480 74 +  25972781 TGATGTATACAG-CAGCCTGTGGTCTCCCTCCCAGGCGTGGGCTGTATACAGCTGGCCTGTGGTCTCCGTCTCTA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206139 74 -   1025902 GGATGTATACAG-CAGCCTGTGGCCTCCCTCCCAGGCGTGGGATGTATACAGCTGGCCTGTGGTCTCTGTCTCTA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159614 74 -    811265 GGATGTATACAG-CAGCCTGTAGTCTCCCTCCCAGGAGTGGGATGTATACAGCTGGCCTATGGTCTCCGTCTCTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144760 74 -    350446 GGATGTATACAG-CAGCCTGTGGTCTCTCTCCCTAGACTGGAATGTATACAGTCAGTCTGTGATCCGCCTCCCTA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=1517.000000
s hg38.chrX_KI270880v1_alt          168301 5 +    284869 GAGAA
s panTro5.chrX                   155220392 5 - 155549662 GAGAA
i panTro5.chrX                   C 0 I 40
s gorGor5.CYUI01015925v1            238670 5 +    417917 GAGAA
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143299986 5 + 180051392 GTGTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49537 5 -     71016 GTGTG
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206213 5 -   1025902 ATGTG
i cerAty1.NW_012001098v1         C 0 C 0
e manLeu1.NW_012108508v1            144834 0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21400 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159688 0 -    811265 C
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554 0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=13124.000000
s hg38.chrX_KI270880v1_alt          168306 13 +    284869 GGATGTATACAGC-
s panTro5.chrX                   155220437 13 - 155549662 GGATGTATACAGC-
i panTro5.chrX                   I 40 T 53
s gorGor5.CYUI01015925v1            238675 13 +    417917 GGATGTATACAGC-
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143299991 14 + 180051392 GGATGTATACAGTC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49542 14 -     71016 GGATGTATACAGTC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206218 14 -   1025902 GAATGTATACAGTC
i cerAty1.NW_012001098v1         C 0 C 0
e manLeu1.NW_012108508v1            144834  0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21400  0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e chlSab2.chrUn_KE147541v1          159688  0 -    811265 C
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554  0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=9333.000000
s hg38.chrX_KI270880v1_alt          168319 13 +    284869 AGCCTGCAGTCTC
s gorGor5.CYUI01015925v1            238688 13 +    417917 AGCCTGCGGTCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143300005 13 + 180051392 GGCCTGTGATCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49556 13 -     71016 AGCCTGTGATCCC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206232 13 -   1025902 GGCCTGTGATCCC
i cerAty1.NW_012001098v1         C 0 C 0
e manLeu1.NW_012108508v1            144834  0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21400  0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e panTro5.chrX                   155220450 53 - 155549662 T
e chlSab2.chrUn_KE147541v1          159688  0 -    811265 C
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554  0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80508 116 -    177848 T

a score=12428.000000
s hg38.chrX_KI270880v1_alt          168332 13 +    284869 CCTCCCAGGAGTG
s panPan2.chrUn_NW_014024190v1       80392 13 -    177848 CCTCCCTAGAGTG
i panPan2.chrUn_NW_014024190v1   T 116 C 0
s gorGor5.CYUI01015925v1            238701 13 +    417917 CCTCCCAGGAGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21400  5 +     35312 --------GTGTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300018 13 + 180051392 CCTCCCTAGACTG
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49569 13 -     71016 CCTCCCTAGACCG
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206245 13 -   1025902 CCTCCCTAGACTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159688  5 -    811265 --------ATGTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144834  5 -    350446 --------GACTG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e panTro5.chrX                   155220450 53 - 155549662 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554  0 +  25972781 C

a score=287754.000000
s hg38.chrX_KI270880v1_alt          168345 94 +    284869 GGATGTATACAGTCAGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCCGGCCTGTGGTCTCCCTCCCAGGAGTGGAATGTATACAGCC
s panTro5.chrX                   155220397 94 - 155549662 GGATGTATACAGCCGGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCCGGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGTC
i panTro5.chrX                   T 53 C 0
s panPan2.chrUn_NW_014024190v1       80405 94 -    177848 GGATGTATACAGCCGGCCTGTGGTCTCCCTCCCTAGAGTGATATGTATACAGTCGGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238714 94 +    417917 GGATGTATACAGCCGGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCCAGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21405 80 +     35312 GAATGTATACAGTCAGCCTGTGATCTCCCTCCCAGGAGTGGGATGTATACAGCTGGCCTGTGGTCT--CTCCCTAGAGTGGA------------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300031 93 + 180051392 GGATGTATACAGTCAGCCTGTGATCCCCCTCCCTAGACTGGGATGTATACAGC-AGCCTGTGGTCTCCCTCCCTAGACTGGGATGTATACAGCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49582 93 -     71016 GGATGTATACAGTCAGCCTGTGATCCCCCTCCCTAGACCGGGATGTATACAGC-AGCCTGTGGCCTCCCTCCCTACACTGGGATGTATACAGCT
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206258 93 -   1025902 GGATGTATACAG-CAGCCTGTGGTCATTCTCTGTAGAGTGGGATGTATACAGCTGGCCTGTGGTCTCCATCTGTAATGTGGAATGTATACAGCC
i cerAty1.NW_012001098v1         C 0 T 220
s chlSab2.chrUn_KE147541v1          159693 93 -    811265 GAATGTATACAGTCAGCCTGTGATCCCCCTCCCTAGACTGGGATGTATACAGC-AGCCTGTGGTCTCTCTCCTTAGAGTGGGATGTATACAGCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144839 93 -    350446 GGATGTATACAGTCGGCCTGTGGTCTCCCTCCCTAGACTGGCATGTATACAGC-AGCCTGTGGTCTCTCTCCCTAGAGTGGGATGTATACAGTC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554  0 +  25972781 C

a score=21861.000000
s hg38.chrX_KI270880v1_alt          168439 9 +    284869 GGCCTGTGG
s panTro5.chrX                   155220491 9 - 155549662 GGCCTGTGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80499 9 -    177848 GGCCTGTGG
i panPan2.chrUn_NW_014024190v1   C 0 T 122
s gorGor5.CYUI01015925v1            238808 9 +    417917 GGCCTGTGG
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143300124 9 + 180051392 GGCCTGTGA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49675 9 -     71016 GGCCTGTGA
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          159786 9 -    811265 GGCCTGTGG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144932 9 -    350446 GGCCTGTGG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            206351 220 -   1025902 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554 0 +  25972781 C

a score=7287.000000
s hg38.chrX_KI270880v1_alt          168448 5 +    284869 TCTCT
s panTro5.chrX                   155220500 5 - 155549662 TCTCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80386 5 -    177848 TCTCT
i panPan2.chrUn_NW_014024190v1   T 122 I 1
s gorGor5.CYUI01015925v1            238817 5 +    417917 TCTCT
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143300133 5 + 180051392 TCGTT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49684 5 -     71016 TCGTT
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          159795 5 -    811265 TCTCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144941 5 -    350446 TTGTT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            206351 220 -   1025902 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554 0 +  25972781 C

a score=4200.000000
s hg38.chrX_KI270880v1_alt          168453 4 +    284869 CTTT
s panTro5.chrX                   155220505 4 - 155549662 TTCC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238822 4 +    417917 CTTT
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143300138 4 + 180051392 CTCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49689 4 -     71016 CTCC
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          159800 4 -    811265 CTTT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144946 4 -    350446 CTCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e cerAty1.NW_012001098v1            206351 220 -   1025902 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554 0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80391 1 -    177848 I

a score=4314.000000
s hg38.chrX_KI270880v1_alt          168457 3 +    284869 CTA
s panTro5.chrX                   155220509 3 - 155549662 CTA
i panTro5.chrX                   C 0 T 221
s gorGor5.CYUI01015925v1            238826 3 +    417917 CTA
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143300142 3 + 180051392 ATA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49693 3 -     71016 GTA
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206131 3 -   1025902 CTA
i cerAty1.NW_012001098v1         T 220 C 0
s chlSab2.chrUn_KE147541v1          159804 3 -    811265 CTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144950 3 -    350446 GTA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300554 0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80391 1 -    177848 I

a score=12298.000000
s hg38.chrX_KI270880v1_alt          168460 18 +    284869 GAGAAGGATGTATACAGC
s gorGor5.CYUI01015925v1            238829 18 +    417917 GAGAAGGATGTATACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s macFas5.chrUn_KE146020             49696 18 -     71016 GAGTGGGATGTATACAGC
i macFas5.chrUn_KE146020         C 0 I 1
s cerAty1.NW_012001098v1            206134 18 -   1025902 GAGTGGGATGTATACAGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159807 18 -    811265 GAGAAGGATGTATACAGC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144953  3 -    350446 GAG---------------
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485  0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e panTro5.chrX                   155220512 221 - 155549662 T
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300145  0 + 180051392 C
e macNem1.NW_012017243v1            300554  0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80391  1 -    177848 I

a score=398.000000
s hg38.chrX_KI270880v1_alt          168478 1 +    284869 A
s panTro5.chrX                   155220291 1 - 155549662 G
i panTro5.chrX                   T 221 C 0
s gorGor5.CYUI01015925v1            238847 1 +    417917 A
i gorGor5.CYUI01015925v1         C 0 T 107
s macFas5.chrUn_KE146020             49715 1 -     71016 G
i macFas5.chrUn_KE146020         I 1 C 0
s cerAty1.NW_012001098v1            206152 1 -   1025902 A
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159825 1 -    811265 A
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144956 0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300145 0 + 180051392 C
e macNem1.NW_012017243v1            300554 0 +  25972781 C
e panPan2.chrUn_NW_014024190v1       80391 1 -    177848 I

a score=10140.000000
s hg38.chrX_KI270880v1_alt          168479 12 +    284869 GCCTGCAGTCTC
s panTro5.chrX                   155220292 12 - 155549662 GCCTGTGGTCTC
i panTro5.chrX                   C 0 C 0
s macFas5.chrUn_KE146020             49716 12 -     71016 GCCTGTGGTCTC
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206153 12 -   1025902 GCCTGTGGCCTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159826 12 -    811265 GCCTGTGGTCTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144956  0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485  0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300145  0 + 180051392 C
e macNem1.NW_012017243v1            300554  0 +  25972781 C
e gorGor5.CYUI01015925v1            238848 107 +    417917 T
e panPan2.chrUn_NW_014024190v1       80391  1 -    177848 I

a score=10119.000000
s hg38.chrX_KI270880v1_alt          168491 8 +    284869 CCTCCCAG
s panTro5.chrX                   155220304 8 - 155549662 CCTCCCAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80392 8 -    177848 CCTCCCTA
i panPan2.chrUn_NW_014024190v1   I 1 C 0
s gorGor5.CYUI01015925v1            238741 8 +    417917 CCTCCCAG
i gorGor5.CYUI01015925v1         T 107 C 0
s macFas5.chrUn_KE146020             49728 8 -     71016 CGTCTCTA
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206165 8 -   1025902 CCTCCCAG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159838 8 -    811265 CCTCCCTA
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            144956 0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21485 0 +     35312 C
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300145 0 + 180051392 C
e macNem1.NW_012017243v1            300554 0 +  25972781 C

a score=66769.000000
s hg38.chrX_KI270880v1_alt          168499 18 +    284869 GAGTGGGATGTATACAGT
s panTro5.chrX                   155220312 18 - 155549662 GAGTGATATGTATACAGT
i panTro5.chrX                   C 0 I 180
s panPan2.chrUn_NW_014024190v1       80400 18 -    177848 GAGTGGGATGTATACAGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238749 18 +    417917 GAGTGGGATGTATACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21485 11 +     35312 -------ATGTATACAGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300145 18 + 180051392 GAGTGGGATGTATACAGC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49736 18 -     71016 ATGTGGAATGTATACAGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300554 18 +  25972781 GTGTGGGATGTATACAGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206173 18 -   1025902 GCGTGGGATGTATACAGC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159846 18 -    811265 GACTGGGATGTATACAGT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144956 15 -    350446 ---TGGGATGTATACAGC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=53843.000000
s hg38.chrX_KI270880v1_alt          168517 13 +    284869 CGGCCTGTGGTCT
s panTro5.chrX                      335078 13 + 155549662 CGGCCTGTGGTCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80418 13 -    177848 CGGCCTGTGGTCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238767 13 +    417917 CAGCCTGTGGTCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21496 13 +     35312 AGGCCTGTGATCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300163 13 + 180051392 TGGCCTGTGGTCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49754 12 -     71016 CGGCCTGTGATC-
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300572 13 +  25972781 CGGCCTGTGGTCT
i macNem1.NW_012017243v1         C 0 T 159
s cerAty1.NW_012001098v1            206191 13 -   1025902 TGGCCTGTGGTCT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159864 13 -    811265 CGGCCTGTGGTCG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144971 13 -    350446 TGGCCTGTGGTCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=133484.000000
s hg38.chrX_KI270880v1_alt          168530 36 +    284869 CCCTCCCAGGAGTGGGATGTATACAGTCGGCCTGTG
s panTro5.chrX                      335091 36 + 155549662 CCCTCCCAGGAGTGGGATGTATACAGCTGGCCTGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80431 36 -    177848 CCCTCCCTAGAGTGATATGTATACAGTCGGCCTGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238780 36 +    417917 CCCTCCCAGGAGTGGGATGTATACAGCCGGCCTGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21509 36 +     35312 CCCTCCCTAGAGTGGGATGTATACAGATGGCTTTTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300176 36 + 180051392 CCGTCTCTAATGTGGAATGTATACAGTCGGCCTGTG
i rheMac8.chr6                   C 0 I 9
s macFas5.chrUn_KE146020             49766 35 -     71016 CCCTCCCTAGACTGGGATGTATACAG-CAGCCTGTG
i macFas5.chrUn_KE146020         C 0 I 2
s macNem1.NW_012017243v1            300426 36 +  25972781 CCCTCCCTAGACTGGGATGTATACAGTCGGCCTGTG
i macNem1.NW_012017243v1         T 159 I 4
s cerAty1.NW_012001098v1            206204 36 -   1025902 CTGTCTCTAATGTGGAATGTATACAGTCGGCCTGTG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159877 36 -    811265 TTCTCCGTAGAGTGGGATGTATACAGTCGGCCTGTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            144984 36 -    350446 CCGTCTCTAATGTGGAATGTATACAGTCGGCCTGTG
i manLeu1.NW_012108508v1         C 0 I 3
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=13065.000000
s hg38.chrX_KI270880v1_alt          168566 5 +    284869 GTCTC
s panTro5.chrX                      335127 5 + 155549662 GTCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80467 5 -    177848 GTCTC
i panPan2.chrUn_NW_014024190v1   C 0 T 53
s gorGor5.CYUI01015925v1            238816 5 +    417917 GTCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21545 5 +     35312 GTCTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             49803 5 -     71016 GTCTC
i macFas5.chrUn_KE146020         I 2 C 0
s macNem1.NW_012017243v1            300466 5 +  25972781 TTCTC
i macNem1.NW_012017243v1         I 4 C 0
s cerAty1.NW_012001098v1            206240 5 -   1025902 ATCCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159913 5 -    811265 ATCTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145020 3 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300212 9 + 180051392 I

a score=-4313.000000
s hg38.chrX_KI270880v1_alt          168571 5 +    284869 TCTTT-
s panTro5.chrX                      335132 5 + 155549662 TCTTT-
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238821 5 +    417917 TCTTT-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21550 5 +     35312 TCTTT-
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             49808 1 -     71016 -C----
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300471 1 +  25972781 -C----
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206245 5 -   1025902 -CCTCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159918 5 -    811265 -CCTCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145020 3 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300212 9 + 180051392 I
e panPan2.chrUn_NW_014024190v1       80472 53 -    177848 T

a score=46136.000000
s hg38.chrX_KI270880v1_alt          168576 21 +    284869 CTAGAGAAGGATGTATACAG-C
s panTro5.chrX                      335137 21 + 155549662 CTAGAGAAGGATGTATACAG-C
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            238826 21 +    417917 CTAGAGAAGGATGTATACAG-C
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21555 21 +     35312 CTGGAGAAGGATGTATACAG-C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300221 21 + 180051392 CTAGACTGGGATGTATACAG-C
i rheMac8.chr6                   I 9 C 0
s macFas5.chrUn_KE146020             49809 22 -     71016 CTAGACTGGGATGTATACAGTT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300472 20 +  25972781 GTAGAGTGTGATGTATACAG--
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206250 21 -   1025902 CTAGACTGGGATGTATACAG-C
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159923 22 -    811265 CTAGAGTGGGATGTATACAGCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145020  3 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       80472 53 -    177848 T

a score=1577.000000
s hg38.chrX_KI270880v1_alt          168597 1 +    284869 A
s panTro5.chrX                      335158 1 + 155549662 A
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80419 1 -    177848 G
i panPan2.chrUn_NW_014024190v1   T 53 C 0
s gorGor5.CYUI01015925v1            238847 1 +    417917 A
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21576 1 +     35312 A
i nomLeu3.chrX_GL398042_1_random C 0 T 79
s rheMac8.chr6                   143300242 1 + 180051392 A
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49831 1 -     71016 G
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206271 1 -   1025902 A
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159945 1 -    811265 A
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145020 3 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            300492 0 +  25972781 C

a score=67036.000000
s hg38.chrX_KI270880v1_alt          168598 39 +    284869 GCCTGCGGTC-TCCCTCCCAGGAGTGATATGTATACAGTT
s panTro5.chrX                      335159 39 + 155549662 GCCTGTGGTC-TCCCTCCCAGGAGTGATATGTATACAGTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80420 39 -    177848 GCCTGTGGTC-TCCCTCCCTAGAGTGATATGTATACAGTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238848 39 +    417917 GCCTGTGGTC-TCCCTCCCAGGAGTGGGATGTATACAGCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21498 39 +     35312 GCCTGTGATC-TCCCTCCCTAGAGTGGGATGTATACAGAT
i nomLeu3.chrX_GL398042_1_random T 79 C 0
s rheMac8.chr6                   143300243 37 + 180051392 GCCTGTG-TT-G-TCTCCCTAGACTGGGATGTATACAGTT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49832 38 -     71016 GCCTGTGATC-C-CCTCCCAGGAGTGGGATGTATACAGCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300492  1 +  25972781 ---------------------------------------C
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206272 39 -   1025902 GCCTGTGGTCAT-TCTCTGTAGAGTGGGATGTATACAGCT
i cerAty1.NW_012001098v1         C 0 I 40
s chlSab2.chrUn_KE147541v1          159946 39 -    811265 GCCTGTGGTC-TCCGTCTCTAGTGTGGGATGTATACAGTT
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145020  3 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=13316.000000
s hg38.chrX_KI270880v1_alt          168637 13 +    284869 GGCC--------------------------------------------------TGTGGTCTC
s panTro5.chrX                      335198 13 + 155549662 GGCC--------------------------------------------------TGTGGTCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80459 13 -    177848 GGCC--------------------------------------------------TGTGGTCTC
i panPan2.chrUn_NW_014024190v1   C 0 T 80
s gorGor5.CYUI01015925v1            238887 13 +    417917 GGCC--------------------------------------------------TGTGGCCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21537 13 +     35312 GGCT--------------------------------------------------TTTGGTCTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300280 12 + 180051392 GGCC--------------------------------------------------TGTGATC-C
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49870 13 -     71016 GGCC--------------------------------------------------TGTGGTCTC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300493 13 +  25972781 AGCC--------------------------------------------------TGTGGTCTC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206351 13 -   1025902 GGCC--------------------------------------------------TGTGGTCTC
i cerAty1.NW_012001098v1         I 40 C 0
s chlSab2.chrUn_KE147541v1          159985 12 -    811265 GGCC--------------------------------------------------TGTGATC-C
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145023 51 -    350446 ---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------
i manLeu1.NW_012108508v1         I 3 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=11916.000000
s hg38.chrX_KI270880v1_alt          168650 3 +    284869 CCT
s panTro5.chrX                      335211 3 + 155549662 CCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80392 3 -    177848 CCT
i panPan2.chrUn_NW_014024190v1   T 80 C 0
s gorGor5.CYUI01015925v1            238900 3 +    417917 CCT
i gorGor5.CYUI01015925v1         C 0 T 55
s nomLeu3.chrX_GL398042_1_random     21550 3 +     35312 TCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300292 3 + 180051392 CCT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49883 3 -     71016 CCT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300506 3 +  25972781 CCT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206364 3 -   1025902 CCT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          159997 3 -    811265 CCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            145074 0 -    350446 C
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=189079.000000
s hg38.chrX_KI270880v1_alt          168653 63 +    284869 CCCAGGAGTGGGATGTATACAGCCGGCCTGTGGTCTCCCTCCCTAGAGTGATATGTATACAGT
s panTro5.chrX                      335214 63 + 155549662 CCCAGGAGTGGGATGTATACAGCCGGCCTGTGGTCTCCCTCCCTAGAGTGATATGTATACAGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80395 63 -    177848 CCCTAGAGTGGGATGTATACAGCCGGCCTGTGGTCTCCCTCCCTAGAGTGATATGTATACAGT
i panPan2.chrUn_NW_014024190v1   C 0 T 40
s nomLeu3.chrX_GL398042_1_random     21553 62 +     35312 TTCTGGAGAAGGATGTATACAG-CAGCCTGTGGTCTCCCTCCCAGGAGTGGGATGTATACAGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300295 63 + 180051392 CCCAGGAGTGGGATGTATACAGCTGGCCTGTGGTCTCCCTCCCTAGACTGGGATGTATACAGT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49886 63 -     71016 CCCTAGACTGGGATGTATACAGTTGGCCTGTGGTCGTTCTCTGTAGAGTGTGATGTATACAGT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300509 63 +  25972781 CCCAGGCGTGGGCTGTATACAGCTGGCCTGTGGTCTCCGTCTCTAGTGTGGGATGTATACAGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206367 63 -   1025902 CCCTAGACTGGGATGTATACAGTCGGCTTGTGGTCGTTCTCCGTAGAGTGGGATGTATACAGT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160000 62 -    811265 CCCTAGACTGGGATGTATACAG-CAGCCTGTGATCTCCCTCCCTAGACTGGGATGTATACAGT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145074 55 -    350446 --------TGGGATGTATACAGCCGGCCTGTGGTCGTTCTCCGTAGAGTGGGATGTATACAGT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            238903 55 +    417917 T

a score=58252.000000
s hg38.chrX_KI270880v1_alt          168716 20 +    284869 CGGCCTGTGGTC----------------------------------------TCCCTCCC
s panTro5.chrX                      335277 20 + 155549662 CGGCCTGTGGTC----------------------------------------TCCCTCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80418 20 -    177848 CGGCCTGTGGTC----------------------------------------TCCCTCCC
i panPan2.chrUn_NW_014024190v1   T 40 C 0
s nomLeu3.chrX_GL398042_1_random     21615 20 +     35312 CGGCCTGTGGCC----------------------------------------TTCCTGCC
i nomLeu3.chrX_GL398042_1_random C 0 T 58
s rheMac8.chr6                   143300358 60 + 180051392 TGGCCTGTGGTCGTTCTCTGTAGAGTGTGATGTATACAGTCGGCCTGTGATCCCCCTCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49949 20 -     71016 CGGCCTGTGATC----------------------------------------CCCCTCCC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300572 20 +  25972781 CGGCCTGTGGTC----------------------------------------TCCCTCCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206430 20 -   1025902 TGGCCTGTGGTC----------------------------------------TCCCTCCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160062 20 -    811265 CGGCCTGTGGTC----------------------------------------ATTCTCCG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145129 20 -    350446 CGGCCTGTGGTC----------------------------------------TCCCTCCC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            238903 55 +    417917 T

a score=50610.000000
s hg38.chrX_KI270880v1_alt          168736 22 +    284869 TAGAGTGATATGTATACAGTTG
s panTro5.chrX                   155220510 22 - 155549662 TAGAGTGAGATGTATACAGCTG
i panTro5.chrX                   I 180 C 0
s panPan2.chrUn_NW_014024190v1       80438 22 -    177848 TAGAGTGATATGTATACAGTCG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s rheMac8.chr6                   143300418 21 + 180051392 TAGACTGGGATGTACACAG-CA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49969 21 -     71016 TAGACTGGGATGTACACAG-CA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300592 22 +  25972781 TAGAGTGGGATGTATACAGTTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206450 22 -   1025902 TAGACTGGGATGTATACAGTCG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160082 22 -    811265 TAGAGTGGGATGTATACAGCTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145149 22 -    350446 TAGACTGGGATGTATACAGTCG
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     21635 58 +     35312 T
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            238903 55 +    417917 T

a score=58885.000000
s hg38.chrX_KI270880v1_alt          168758 18 +    284869 GCCTGTGGTCT---------------------------------------CCCTCCC
s panTro5.chrX                   155220532 18 - 155549662 GCCTGTGGTCT---------------------------------------CCCTCCC
i panTro5.chrX                   C 0 T 24734
s panPan2.chrUn_NW_014024190v1       80460 18 -    177848 GCCTGTGGTCT---------------------------------------CCCTCCC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238848 18 +    417917 GCCTGTGGTCT---------------------------------------CCCTCCC
i gorGor5.CYUI01015925v1         T 55 C 0
s nomLeu3.chrX_GL398042_1_random     21577 18 +     35312 GCCTGTGGTCT---------------------------------------CCCTCCC
i nomLeu3.chrX_GL398042_1_random T 58 C 0
s rheMac8.chr6                   143300439 18 + 180051392 GCCTGTGGTTT---------------------------------------CCCTCCC
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             49990 18 -     71016 GCCTGTGGTTT---------------------------------------CCCTCCC
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300614 16 +  25972781 GCCTGTGGTGT-----------------------------------------CTCCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206472 16 -   1025902 GCCTGTGGTCT-----------------------------------------CTCTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160104 57 -    811265 GCCTGTGGTCTCTGTCTCTAATGTGGAATGTATACAGTCGGGCTGTGATCCCCTCCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145171 16 -    350446 GCCTGTGGTCT-----------------------------------------CTCTC
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=1459694.000000
s hg38.chrX_KI270880v1_alt          168776 343 +    284869 AGGAGTGGGATGTATACAG-------------------------------------TCGGCCTGTGGCCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAATGCTCACCTCAACAGGCAGTATTCCTTGGACTCCTGGTCTGCAGACATCCTGGTTCCTCATTCCCTGAAATTCTGCGTGGGA----CGTTTTTCCGCCTGGGCCTGAGTGACACTGGCTTTGACGTAGCTTCTAGGTGAAGATCAATGAAGGCCTCGGTGGGGCCCAATTTCTTGGTGGAAACTCATCCCGTTTCTGATAAAGGATGGCCCGGGAAGACCTAGAATACGGTGACACCGCGTCCCTCTCCCCCGTGGGTCCCCGAACCTGCAGATGACCAC----------------------------AT
s panTro5.chrX                      335297 343 + 155549662 AGGAGTGGGATGTATACAG-------------------------------------CCGGCCTGTGGCCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCTCACCCCAACAGGCAGTATTCCTTGGACTCCTGGTCTGCAGACATCCAGGGTCCTCATTCCCTGAAATTCTGCGTGGGA----CGTTTTTCCGCCTGGGCCTGAGTGACACTGGCTTTGACGTAGCTTCTAGGTGAAGATCAATGAAGGCCTCGGTGGGGCCCAATCTCTTGGTGGAAACTCATCCCGTTTCTGATAAAGGATGGCCCGGGAAGACCTAGAATACGGTGACACCGCGTCCCTCTCCCCCGTGGGTCCCCGAACCTGCAGAGGACCAC----------------------------AT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80478 343 -    177848 AGGAGTGGGATGTATACAG-------------------------------------CCGGCCTGTGGCCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCTCACCCCAACAGGCAGTATTCCTTGGACTCCTGGTCTGCAGACATCCAGGGTCCTCATTCCCTGAAATTCTGCGTGGGA----CGTTTTTCCGCCTGGGCCTGAGTGACACTGGCTTTGACGTAGCTTCTAAGTGAAGATCAATGAAGGCCTCGGTGGGGCCCAATCTCTTGGTGGAAACTCATCCCGTTTCTGATAAAGGATGGCCCGGGAAGACCTAGAATACGGTGACACCGCGTCCCTCTCCCCCGTGGGTCCCCGAACCTGCAGAGGACCAC----------------------------AT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            238866 342 +    417917 AGGAGTGGGATGTATACAG-------------------------------------CCGGCCTGTGGCCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCTCACCTCAACAGGCAGTATTCCTTGGCCTCCTGGTCTGCAGACATCCAGGGTCCTCATTCCTTGAAATTCTGCGTGGGA----CGTTTTTCCGCCTGGGCCTGAGTGACACTGGCTTTGACGTAGCTTCTAGGCGAAGATCAATGAAGGCCTCGGTGGGGCCCAATCTCTTGGTGGAAACTCATCCCGTTTCTGATAAAGGATGGCCCGGGAAGACCTAGAATACGGTGACATCGCGTCCCTCT-CCCCGTGGGTCCCCGAACCTGCAGATGACCAC----------------------------AT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21595 364 +     35312 AGGAGTGGGATGTATACAG-------------------------------------CCGGCCTGTGGCCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCTCACCTCGACAGGCAGTGTTTCTTGGACTCGTGGTCTGCAGACATCCTGGGTCCTCATTCCCTGAAATTCTGCTTGGGA----CATTCTTCCGCCTG-------GTGACATTGGCTTTGATGTAGCTTTTAGGCGAAGATCAACGAAGGCCTCGGTGGGGCCCAAACTCTCAGCGGAAACTCACCCCGTTTCTGATAAAGGATGTCCCGGGGAGGCCTAGAATATGGTGACACCGCGTCCCTGTCCCCTGTGGGTCCCCGAACCTGCAGATGAGCACCTTTGCCCTCTCTTTGCTCTGCCTGCATAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300457 374 + 180051392 AGGCGTGGGATGTATACAC-------------------------------------CCGGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CCTCCACAGGCCGTATCCCTTGGACTCCTGGTCTGCAGACAGCCCGGGTCCTCGTTCCCTGACACGCTGCGTGGGGCATTCAATTTTCCGTCTGGGCCCGGGTGACCCTGGCTTTGCCGCGGCTTCGAGGCGAAGATCCGTGAAGGCCTCGGTGGGGCTCAGTCTCGTGGTGGAAACTCACCCCGTTTCTGCTGCAGGATGTCCCAGGAAGGCCTAGAATACGGTGGCATCGCGTCCCTCTCCTCTGTGGCTCCCGGAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGTATAT
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             50008 374 -     71016 AGGCGTGGGATGTATACAC-------------------------------------CCGGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CCTCCACAGGCCGTATCCCTTGGACTCCTGGTCTGCAGACAGCCCGGGTCCTCGTTCCCTGACACGCTGCGTGGGGCATTCATTTTTCCGTCTGGGCCCGGGTGACCCTGGCTTTGCCGCGGCTTCGAGGCGAAGATCCGTGAAGGCCTCGGTGGGGCTCAGTCTCGTGGTGGAAACTCACCCCGTTTCTGCTGCAGGATGTCCCAGGAAGGCCTAGAATACGGTGGCATCGCGTCCCTCTCCTCTGTGGCTCCCCGAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGTATAT
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            300630 374 +  25972781 TAGACTGGGATGTATACAC-------------------------------------CCGGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CCTCCACAGGCCGTATCCCTTGGACTCCTGGTCTGCGGACAGCCCAGGTCCTCGTTCCCTGACACGCTGCGTGGGGCATTCATTTTTCTGTCTGGGCCCGGGTGACCCTGGCTTTGCCGCGGCTTCGAGGCGAAGATCCGTGAAGGCCTCGGTGGGGCTCAGTCTCGTGGTGGAAACTCACCCCGTTTCTGCTGCAGGATGTCCCAGGAAGGCCTAGAATACGGTGGCATCGCGTCCCTCTCCTCTGTGGCTCCCCGAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGTGTAT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            206488 374 -   1025902 TAGACTGGGATGTATACAG-------------------------------------CCGGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CGTCCACAGGCCGTATCCCTTGGACTCCTGGTCTGCAGACAGCCCGGGTCCTCGTTCCCTGACACGCTGCGTGGGGTATTCGTTTTTCCGTCTGGGCCCGGGTGACCCTGGCTTTGCCGCGGCTTCGAGGCGAAGATCCGTGAAGGCCTCGGTGGGGCTCAGTCTCGTGGTGGAAACTCACCCCGTTTCTGCTGCAGGACGTCCCAGGAAGGCCTAGAATACGGTGGCATCGCGTCCCTCTCCTCTGTGACTCTCCGAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGTGTAT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160161 401 -    811265 TAGACTGGGATGTATACAGCAGCCTGTGGCCTCTCCCTAGACTGGGATGTCTACACCCGGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CCTCCATGGGCCGTATCCCTTGGACTCCTGGTCTGCAGACAGCCTGGGTCCTCGTTCCCTGACACTCTGTGTGGGGCATTCATTTTTCCGTCTGGGTCCGGGTGACCCTGGCTTTGCCGTGGCTTCGAGGC----------GAAGGCCTCGGTGGGGCTCAGTCTCGTGGTGGAAACTCACCCCATTTCTGCTACAGGATGTCCCAGGAAGGCCTGGAATATGGTGGCATCGCGTCCCTCTCCTCTGTGACTCCCCAAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGCGTAT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145187 374 -    350446 TAGACTGGGATGTATACAG-------------------------------------CCAGCCTGTGGTCTTCCTGCCTGGTGTGTATACAGCAGGCCTGTAACGCCC-CGTCCACAGGCCGTATCCCTTGGACTCCTGGTCTGCAGACAGCCCGGGTCCTCGTTCCCTGACACGCTGCGTGGGGCATTCGTTTTTCCGTCTGGGCCCGGGTGACCCTGGCTTTGCCGCGGCTTCGAGGCGAAGATCCGTGAAGGCTTCGGTGGGGTTCAGTCTCGTGGTGGAAACTCACCCCGTTTCTGCTACAGGACGTCCCAGGAAGGCCTAGAATACGGTGGCATCGCGTCCCTCTCCTCTGTGGCTCCCCGAACCTGCAGGTGAATACATCTGCCCCGTCTTTTCTCTGCCTGCGTAT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  250903 1047 +  11138919 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=235600.000000
s hg38.chrX_KI270880v1_alt          169119  75 +    284869 T-------------------------------------------------TTAGGA---------------------------------------------------------------------------------ACCTTGTATCAGGAGC--ATGTCTTAATGTTATTACGTCTTTCTCAAAAACAAGATTTTGGATTCC-TACG
s panTro5.chrX                      335640  75 + 155549662 T-------------------------------------------------TTAGGA---------------------------------------------------------------------------------ACCTTGTATCATGAGC--ACGTCTTAATGTTATTACGTCTTTCTGAAACACAAGATTTTGGATTCC-TACG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80821  75 -    177848 T-------------------------------------------------TTAGGA---------------------------------------------------------------------------------ACCTTGTATAAGGAGC--ACGTCTTAATGTTATTACGTCTTTCTCAAAAACAAGATTTTGGATTCC-TACG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            239208  76 +    417917 T-------------------------------------------------TTAGGA---------------------------------------------------------------------------------ACCTTGTATCATGAGC--ATGTCTTAATGTTATTACGTCTTTCTCAAAAACAAGATTTTGGATTCCTTACG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     21959 132 +     35312 T-------------------------------------------------TTGGGACGGATCCGTGGGATACGGCT-------------------------TTGAAGTTAAAAATATAGTTTCTGATTCTTTTAAG-AACTTTTATAATGAGCATATGTCTTAATGTCATTACGTCTTTCTCAAAAACAAGATTTTGGATTCC-TGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300831 131 + 180051392 T-------------------------------------------------TGGGGACGGGTCCGTGGGATACGACT-------------------------TTGAAGCTAAAAAACTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGACGTCTTTCTCCGAACCAAGATTTTGGATTCC-TCCA
i rheMac8.chr6                   C 0 I 6
s macFas5.chrUn_KE146020             50382 131 -     71016 TTGGGGACGGGTCCGTGGGATACGACT--------------------------------------------------------------------------TTGAAGTTAAAAATCTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGACGTCTCTCTCCACAACAAGATTTTGGATTCC-TCCA
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            301004 131 +  25972781 T-------------------------TGGGGACGGGTCCGTGGGATACGAC------------------------T-------------------------TTGAAGTTAAAAATCTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGACGTCTTTCTCCGAACCAAGATTTTGGATTCC-TCCA
i macNem1.NW_012017243v1         C 0 I 6
s cerAty1.NW_012001098v1            206862 131 -   1025902 T--------------------------------------------------------------------------TGGGGACGGGTCCGTGGGATACGACTTTGAAGTTAAAAATGTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGACGTCTTTCTCCGAAACAAGATTTTGGATTCC-TCCA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160562 131 -    811265 T-------------------------------------------------TGGGGACGGGTCCGCGGGATACGACT-------------------------TGGAAGTTAAAAATCTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGACGTCTTTCTCTGAAACAACATTTTGGATTCC-TCCA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145561 131 -    350446 T-------------------------------------------------TGGGGACGGGTCCGTGGGATACGACT-------------------------TGGAAGCTAAAAATCTAGTTTCTGGTTCTTTCAAGAACCTTCTAGAATGAGC--ATGTCTGAATGTCATGATGTCTTTCTCCGAAACAAGATTTTGGATTCC-TCCA
i manLeu1.NW_012108508v1         C 0 C 0
s otoGar3.GL873584                  251950  71 +  11138919 -----------------------------------------------------------------------------------------------------------------------------------TTTAGGAC--TATGCAATGAGC--ATGTCTTAATGTCACCTGGCATTTTCTAAAAACAATGTTTT-GATCTC-TGTG
i otoGar3.GL873584               I 1047 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=-3586.000000
s hg38.chrX_KI270880v1_alt          169194 17 +    284869 TGACAC--GGATCCTTCTA
s panTro5.chrX                      335715 17 + 155549662 TGACAG--GGATCCTTCTA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80896 17 -    177848 TGACAG--GGATCCTTCTA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            239284 17 +    417917 TGGCAG--GGATCCTTCTA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     22091 17 +     35312 CGACAT--GCACCCTTTTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             50513  6 -     71016 GGACAT-------------
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            206993  8 -   1025902 GGACATGG-----------
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          160693  6 -    811265 GGACGT-------------
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            145692  6 -    350446 GGACGT-------------
i manLeu1.NW_012108508v1         C 0 C 0
s otoGar3.GL873584                  252021 17 +  11138919 TGACAT--CTCCATGTGTA
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143300962  6 + 180051392 I
e macNem1.NW_012017243v1            301135  6 +  25972781 I

a score=3838724.000000
s hg38.chrX_KI270880v1_alt          169211 894 +    284869 GGTCCGCCGGCAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCCTAAACCTTCTAGCTCATAAAACGTGGATTG--TTAAGATTGACTCCTTCAGGTAAAATTATTGGATTTCATATACCAACTGCTAAAAGGCACTATTCATAGTCT-CAAACGGCTTGCGGG-AAAAGCTGTTCTAATTTAC--GTTCCTGCCGGCAGAGCAAGAG--GTCGCCCGGGACTT-ACGCT--GTGAT-GAACATTGAGGTTCATTTTAAAAAGAAAATGAGGAAttctgcaaatttcatagtttc--aaa----acggcatccattgttttgac-ttg---gca-ttta---aagacgactttttagtgggggaca-attctttttcatgtttacaagccat-gtgtgtttctcttttgt-aaattacttgagatgtttgcttatttttcc--aGTGTTTACCAGTTCTT-AGGGCCCTgaacttcagagtcacaca-gaactgggtttgaatccaaacac-aacacgacaatttactagctccgtttctccggagaagttaatttatgcctttaattttcactttctccgtctgtagcaaat-tgc--ctagagtttttatgacattt-aaaccagataatatatgtacattgagtagcacagaattttaatgcaca-gaaagcattcaataaatagcaATCAttcttgttgattt-gtaagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCATA----TTTT-ATCAATATTTTTCAACTTCTTTTATG-CTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACCTAAAGAGTTTTAAAATTGAATGTAGTCAAATTGATCAGTCTTGTTCATATAATTTCTTCCATTGTTTTTATTCTTGGAAAGTACTTCTGAATGTAGAGATG-TAATATTCA
s panTro5.chrX                      335732 881 + 155549662 GGTCCGCCAGCAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCCTAAACCTTCTAGCTCATAAAACGTGGATTG--ttaagattgactccttcaggtaaaattattggatttaatataccaactgctacaaggcactattcatagtct-caaacggcttgcggg-aaaagctgttctaatttac--gttcctgccagcagagcaagag--gtcgcccgggacgt-acgct--gtgat-gaacatcgaggttcattttaaaaggaaaatgaggaactctgcaaatttaatagtttc--caa----acggcatccgttgttttgac-ttg---gca-ttta---aagaagactttttagtgggggaca-attctttttcatgtttacaagccat-gtgtgtgtctcttctgt-caattacttgagatgtttgcttatttttccagagtgtttgGCAGTTCTT-AGGGCCCTgaacttcagagtcacaca-gaactgggtttgaatccaaacac-aacacgacaatttactagctccgtttctccggagaagttaattcatgcctttaattttcactttctccgtctgtagcaaat-cgc--ctagagtttttatgacattt-aaaccagataatatatgtacattcagta---------------gcaca-gaaaccattcaataaatagcaATCAttcttgttgattt-gtaagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCATA----TTTT-ATCAATATTTTTCAACTTCTTTTAAG-CTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACCTAAAGAGTTTTAAAATTGAATGTAGTCAAATTGATCAGTCTTGTTCATATAATTTCTTCCATTGTTTTTATTCCTGGAAAGCGCTTCTGAATGTAGAGATG-TAATATTCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       80913 881 -    177848 GGTCCGCCAGCAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTTGA-TGATT-CCCTAAACCTTCTAGCTCATAAAACGTGGATTG--TTAAGATTGACTCCTTCAGGTAAAATTATTGGATTTAATATACCAACTGCTACAAGGCACTATTCATAGTCT-CAAACGGCTTGCGGG-AAAAGCTGTTCTAATTTAC--GTTCCTGCCAGCAGAGCAAGAG--GTCGCCCGGGACGT-ACGCT--GTGAT-GAACATCGAGGTTCATTTTAAAAGGAAAATGAGGAACTCTGCAAATTTAATAGTTTC--CAA----ACGGCATCCGTTGTTTTGAC-TTG---GCA-TTTA---AAGAAGACTTTTTAGTGGGGGACA-ATTCTTTTTCATGTTTACAAGCCAT-GTGTGTGTCTCTCCTGT-CAATTACTTGAGATGTTTGCTTATTTTTCCAGAGTGTTTAGCAGTTCTT-AGGGCCCTgaacttcagagtcacaca-gaactgggtttgaatccaaacac-aacacgacaatttactagctccgtttctccggagaagttaattcatgcctttaattttcactttctccgtctgtagcaaat-cgc--ctagagtttttatgacattt-aaaccagataatatatgtacattcagta---------------gcaca-gaaaccattcaataaatagcaATCAttcttgttgattt-gtaagagctc-tttatatattaaggacacaggctcttttatcattggcata----tttt-atcaatatttctcaacttcttttaag-ctacttgaaattgtttt--------------------------------------------------------------------------ttaaacctaaagagttttaaaattgaatgtagtcaaattgatcAGTCTTGTTCATATAATTTCTTCCATTGTTTTTATTCCTGGAAAGCGCTTCTGAATGTAGAGATG-TAATATTCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            239301 902 +    417917 GGTCCGCCGGCAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGATTGATTCCCCTTAAACTTCTAGCTCAT-AAACGTGGATTGGATTAAGATTGACTCCTTCAGGTAAAATTATTGGATTTAATATACCAACTGCTA-AAGGCACTATTCATAGTCTGCAAACGGCTTGCGGGAAAAAGCTGTTCTAATTTAC--GTTCCTACCGGCAGAGCAAAAGTAGGTGCCCGGGACTT-ACGCTCGGTGATGGAACATCGAGGTTCATTTTAAAAGGAAAATGAGGAATTCTGCAAATTTAATAGTTTCAAAAA----ACGGCATCCATTGTTTTGACTTTG---GCATTTTA---AAGAAAACTTTTTAGT-GGGGACA-ATTCTTTTTCATGTTTGCAAGCCATCGTGTGTTTCTCTTCTGTAAAATTACTTGA-ATTTTGTCTTATTTTTTCCATGTATTGACCAGTTCTTaagggccctgaacttcagagtcacacaggaactgggtttgaatccaaacacaaacatgacaatttactagctccattctcc--gagaagttaattcatgcctttaa-tttcactttctccgtctgtagcaaacgtgccgctagagtttttatgacatttaaaaccagataatatatgtacattcagta---------------gcacatgaaaccattcaataaatagcaATCATTCTTGTTGATTTGGTAAGAGCTCGTTTATATATTAAGGACACAGGCTC-TTTATCATTGGGCCAATATTTTT-ATCAATATTTTTCAACTTCTTTTATGCCTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACATAAAGAGTTT--AAAATGAATGTAGT-ACATTGATCAGTCTTG-TCATATAATTTCTTCCATTGTTTTTATTCCTGGAAAGTGCTTCTGAATGTAGAGATGTTAATATTCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     22108 870 +     35312 GGTCCACCGGCAGCTATTTGACCAGGCTGTT-------------------------CCCTAAACCTTCTAGCCCATAAAACGTGGATTG--ttaagatcaactctttcaggtaaaattattggatttaatataccaactgctaaaaggcactattcatagtct-caaacggcttgcggg-aaaagctgttctaatttac--gttcctaccggcagagcaagag--gtcgccggggactt-acact--gtgat-taacgtcgaggttcattttaaaaggaaaatgaggaactctgcaaatttaatagtttc--aaa----acggcatccgttgttttgac-ttg---gca-ttta---gagaacactttttagtaggggaca-attctttttcatgtttacaagccgt-gtgtgtttctcttctgt-aaattacctgAGATGTTTGCTTATTTTTCC--AGTGTT-AGCAGTTCTT-aggaccctgaacttcagagtcacaca-gaactgggtttgaatccaaacac-aacacgacaatttactagctccgtttctccggagaagttaattcattcctttaattttcactttctctgtctgtagtaaat-cgc--ctagagtttttatgacattt-aaaccagataatatatgtacatcgagtagcacagaattttgatgcaca-gaaaccattcaataaatACCAATCAttcttgttgattt-gtaagagctc-tttatatattaaggacacaggctcttttatcattggcata----tttt-atcaat-tttttaagcttcttttatg-ctacttgaaattgtttt--------------------------------------------------------------------------ttaaacataaagagttttaaaattcaacgtagtcaaattgatcAATGTTGTTCATATAATTTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTGAATTTAGAGATG-TAATATTCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143300968 894 + 180051392 GGTCCACCCACAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCATAAACCTTTTAGCCCGTAAAACGTGGATTG--TTAAGATCGACCCTTCCAGGAAAAATGATTGGATTTAAAATACCAACCTCTAAAAGGCGCGATTCATAATCT-CTAATGGCTTGTGGGAAAAAGCCGTTCTAATTTACGTGTTCCTCCTGGCGGAGCAAGAG--GTAGCCCGGGACTTAACGCC--GTCAT-TCACATCGAGGTTCATTTTAAAAGGAAAATGAGGAACTTTGCAGATTTAACGGTTTC--AAA----ACAGCATCCATGGTTTTGAC-GTG---GCC-TTT----AAACAAACTTCTC-GGGGGAAATC-CTTCTTTTTCATGTTTACGGGCCAT-GTGTGTTTCTCGTCTGT-AAATTAGTCGGGAGGTTTGCTTATTTTTCC--GGTGTT-AGCAGTTCTT-agagccctgagcttcagagtcacaca-gaactgggtttgaatccaaacac-agcaccacaatgtactagctctgtttctccggagaagttcgttcattcctttaattctcattatctgagtctgtagcaaat-cgc--atagaggtttgatgacattt-aaaccagataatagatgtacatcgagtggcacagaattttaatgcaca-gaaagcgttcaa-aaatagCCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCCTA----TGGT-ATCAAGATTTTTCAGCTTCTTTTATG-CTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACATAAAGAGTTTTAAAATTGAATGTAGTCAGATTGATCAGTCTCGTTCATATAATGTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTCAATGTAGAGATG-TAATATTCA
i rheMac8.chr6                   I 6 I 2
s macFas5.chrUn_KE146020             50519 898 -     71016 GGTCCACCCACAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCATAAACGTTTTAGCCTGTAAAACGGGGATTG--TTAAGATCGACCCCTCCAGGTAAAATGAGTGGATTTAAAATACCAACCTCTAAAAGGCGCGATTCATAATCT-CTAATGGCTTGTGGGAAAAAGCCGTTCTAATTTACGTGTTCCTCCTGGCGGAGCAAGAG--GTAGCCCGGGACTTAACGCC--GTGAT-TCACATCGAGGTTCATTTTAAAAGGAAAATGGGGAACTCTGCAGATTTAACGGTTTC--AAA----ACGGCATCCACGGTTTTGAC-GTG---GCC-TTTAAACAAACAAACTTCTC-GGGGGGAACC-CTTCTTCTTCATGTTTACGGGCCAT-GTGTGTTTCTCGTCTGT-AAATTAGTCGGGAGGTTTGCTTATTTTTCC--GGTGTT-AGCAGTTCTT-agagccctgagcttcagagtcacaca-gaactgggtttgaatccaaacac-agcaccacaatgtactagctctgtttctccggagaagttcgttcattcctttaattctcattttctgagtctgtagccaat-cgc--ctagaggtttgatgacattt-aaaccagataatagatgtacatcgagtggcacagaattttaatgcaca-gaaagcgttcaa-aaatagCCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCCTA----TGGT-ATCAAGATTTTTCAGCTTCTTTTATG-CTACTTGAAATTGTTTC--------------------------------------------------------------------------TTAAACATAAAGAGTTTTAAAATTGAATGTAGTCGAATTGATCAGTCTCGTTCATATAATGTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTCAatgtagagatg-taatattca
i macFas5.chrUn_KE146020         C 0 I 2
s macNem1.NW_012017243v1            301141 898 +  25972781 GGTCCACCCACAGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCATAAACCTTTTAGCCTGTAAAACGTGGATTG--TTAAGATCGACCCTTCCAGGAAAAATGATTGGATTTAAAATACCAACCTCTAAAAGGCGCGATTCATAATCT-CTAATGGCTTGTGGGAAAAAGCCGTTCTAATTTACGTGTTCCTCCTGGCGGAGCAAGAG--GTAGCCCGGGACTTAACGCC--GTGAT-TCACATCGAGGTTCATTTTAAAAGGAAAATGGGGAACTCTGCAGATTTAACGGTTTC--AAA----ACGGCATCCACGGTTTTGAC-GTG---GCC-TTTAAACAAACAAACTTCTC-GGGGGGAACC-CTTCTTCTTCATGTTTACGGGCCAT-GTGTGTTTCTCGTCTGT-AAATTAGTCGGGAGGTTTGCTTATTTTTCC--GGTGTT-AGCAGTTCTT-agagccctgagcttcagagtcacaca-gaactgggtttgaatctaaacac-agcaccacaatgtactagctctgtttctccggagaagttcgttcattcctttaattctcattttctgagtctgtagccaat-cgc--ctagaggtttgatgacattt-aaaccagataatagatgtacatcgagtggcacagaattttaatgcaca-gaaagcgttcaa-aaatagCCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCCTA----TGGT-ATCAAGATTTTTCAGCTTCTTTTATA-CTACTTGAAATTGTTTC--------------------------------------------------------------------------TTAAACATAAAGAGTTTTAAAATTGAATGTAGTCAAATTGATCAGTCTCGTTCGTATAATGTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTCAATGTAGAGATG-TAATATTCA
i macNem1.NW_012017243v1         I 6 I 2
s cerAty1.NW_012001098v1            207001 893 -   1025902 --TCCACCCACGGCTATTTGACCAGGCTGTTA-TTTAACAGAATGTAGA-TGATT-CCATAAACCTTTTAGCCCGTAAAACGTGGATTG--TTAAGATCGACCACTCCAGGTAAAATGAGTGGATTTAATACACCAACCTCTAAAAGGCACGATTCATAATCT-CAAACGGCTTGTGGGAAAAAGCTGTTCTAGTTTACGTGTTCCTCCTGGCGGAGCAAGAG--GTCGCCCGGGACTTAACGCC--GTGAT-TCACATCGCGGTTCATTTTAAAAGGAAAACGGGGAACTCTGCAGATTTAACGGTTTC--AAA----ACGGCATCCACGGTTTTGAC-GTG---GTC-TTT----AAATAGACTTTTCAGGGGGGAACT-CTTCTTCTTCATGTTTACGGGCCAT-GTGTGTTTCTCGTCTGT-AAATTAGTCGGGAGGTTTGCTTATTTTTCC--GGTGTT-AGCAGTTCTT-agagccctgagcttcagagtcacaca-gaactgggtttgaatccaaacac-agcaccacaatgtactagctctgtttctctggagaagttcgttcatttctttaattctcattatctgagtctgtagcaaat-cgc--atagaggtttgatgacattt-aaaccagataatagatgtacatcgagtggcacagaattttaatgcaca-gaaagcgttcaa-aaatagCCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCCTA----TGGT-ATCAAGATTTTTCAGCTTCTTTTATG-CTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACATAAAGAGTTTTAAAATTGAATGTAGTCAAATTGATCAGTCTCGTTCGTATAATGTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTCAATGTAGAGATG-TAATATTCA
i cerAty1.NW_012001098v1         C 0 I 6257
s chlSab2.chrUn_KE147541v1          160699 893 -    811265 GGTCCACCCACGGCTATTTGACGATGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCATAAACCTTCTAGCCCGTAAAACGTGGATTG--TTAAGATCGACACTTCCAGGAAAAATGATTGGATTTAAAATACCAACCTCTAAAAGGCACGATTCATAATCT-CAAATGGCTTGTGGGAAAAAGCCGTTCTAATTTAC--CTTCCTCTCGGCGGAGCAAGAG--GTCGCCGGGGACTTAACGCC--GTGAT-TCACATCGAGGTTCATTTTAAAAGGAAAATGAGGAACTTTGCAGATTTAACGGTTTC--AAA----ACGGCATCCACGGTTTTGAC-GTG---GCC-TTT----AAACAGACTTTTCGGGGGGGAACC-CTTCTTTTTCATGTTTACGGGCCAT-GCGTGTTTCTCGTCCGT-AAATTAGTTGGGAGGTTTCCTTATTTTTCG--GGTGTT-AGCAGTTCTT-Cgagccctgagcttcagagtcacacc-gaactgggtttgaatccaaacac-agcaccacaatgtactagctctgtttctccggagaagtgaattcattcctttaattctcattttctgagtctgtagcaaat-cgc--ctagaggtttgatgacattt-aaaccagataatagatgtttgttgagtagcacagaattttaatgcaca-gaaagccttcaataaatagCCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCGTTGGCCTA----TTGT-ATCAAGATTTTTCAGCTTCTTTTAT--CTACTTGAAATTGTTTT--------------------------------------------------------------------------TCAAACATAAAGAGTTTTAAAAATGAATGTAGTCAAATTGATCAGTCTCGTTCATATAATGTCTTCCATTGTTTTTATCCCTGCAAAGTCCTTCTCAATGTAGAGATG-TAATATTCA
i chlSab2.chrUn_KE147541v1       C 0 I 4
s manLeu1.NW_012108508v1            145698 896 -    350446 GGTCCACCCACGGCTATTTGACCAGGCTGTTA-TTTAAGAGAATGTAGA-TGATT-CCATAAACCTTTTAGCCCGTAAAACGTGGATTG--TTAAGATCGAACCCTCCAGGTAAAATGAGTGGATTTAATACACCAACCTCTAAAAGGCACGATTCATAATCT-CAAACGGCTTGTGGGAAAAAGCTGTTCTAATTTACGTGTTCCTCCTGGCGGAGCAAGAG--GTAGCCGGGTACTTAACGCC--GTGAT-TCACATCGAGGTTCATTTTAAAAGGAAAATGAGGAACTTTGCAGATTTAACGGTTTC--AAA----ACGGCATCCACGGTTTTGAC-GTG---GCC-TTT----AAACAGACTTTTCAGGGGGGAACT-CTTCTTTTTCAAGTTTACGGGCCAT-GTGTGTTTCTCGTCTGT-AAATTAGTCGGGAGGTTTGCTTATTTTTCC--GGTGTT-AGCAGTTCTT-agagccctgagcttcagagtcacaca-gaactgggtttgaatccaaacac-agcaccacaacgtactagctctgtttctctggagaatttcgttcattcctttaattctcattttctgagtctgtagccaat-cgc--ctagaggtctgatgacattt-aaaccagataatagatgtacatcaagtggcacagaattttaatgcaca-gaaagcattcaataaatagGCATCAttcttgttgattt-ctcagagctc-tttatatattaaggacaCAGGCTCTTTTATCATTGGCCTA----TGGT-ATCAAGATTTTTCAGCTTCTTTTATG-CTACTTGAAATTGTTTT--------------------------------------------------------------------------TTAAACATAAAGAGTTTTGAAATTGAATGTAGTCAAATTGATCAGTGTCGTTCGTATAATGTCTTCCATTGTTTTTATTCCTGGAAAGTCCTTCTCAATGTAGAGATG-TAATATTCA
i manLeu1.NW_012108508v1         C 0 I 2
s otoGar3.GL873584                  252038 931 +  11138919 AATGCATCAGCATCCATTTCACCATGCTGTTATTTTGGGGGAATTTAGA-TTATT-TCATGAACATTTGGGCACATAAAA--TGGATTG--TT---------------------TTTTATTGCATTCAATAAACGACTTTGTAAAAGGCCTGATTC--AGTGT-CAAAAAGCTTTCTGG-AATATTTGCAGTAATTTAT--ACTCTTA--AGCAGTGCACAGC--ATTACCTGGGACATCATCCT--ACGAT-TATCACTGCTTTTCATTTAAACAGGAAAAAAATCAACTCTCCCCATTCAACTGTTTT--TAAATGGACGGTAGCCACGGTTTCAAT-TTGGGAGTT-TTT----AAG-----TTTTTAGCAGGGAACATTTTCTTTTCCATGCTTACTGGCTAT-GC-TACTAGTCTTCTGT-GAATTAATGAGGTGGTTTATTTATTTTTTC--CATGTT-AGCAGTCTTG-aggaacatgaacctagaattcacata-gaacagcttttaaatcctaactc------tacaatttaccagctctaggattctaagcaagttaatcaactactttaattctctatttcctggtccatagcaaat-tga--gtagggcttttatgacaatc-agactagataatgtatgtaaagtgaaca---caaaatgttaatgccca-gatagcatttaataaatatcaattattCTTATTGATTT-GTAAAGACTC-TTTATATATGAAGAACATAAGCCCTTTTATCACTGGCATA----TTTTAATAAAGATTTTCTAGCTTCTTTCATA--AATTTGATATTATTTTTGAGACATGAAATATGAAAATAAATAATTTGTTGGTATTTTTTCGGACAACATATACAAATGAATATATTTATCTTAGACATAAAATGTTTTACATTTGAATATCATCAAATCCATCAGTCT---TCATAGAAT-TCTTCTATTCTTTTTATTTTTTAAAAGTCATTCTCAATGTAAAGATT-TAATATTTA
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=-17523.000000
s hg38.chrX_KI270880v1_alt          170105 23 +    284869 -----------CCTACAttttttt------------tg---------t--ttttttt
s panTro5.chrX                      336613 20 + 155549662 -----------TCTACAttttttt------------tg--------------ggggg
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       81794 19 -    177848 -----------TCTACAttttttt------------tg---------------gggg
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            240203 18 +    417917 -----------TCTATAttttttt------------tt----------------tgg
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     22978 22 +     35312 -----------TCTACAttttttc------------tt------------ttttttt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143301864 45 + 180051392 -----------TATATATATATAT-TTtttgtttgtttgtttgtttgtttgtttttt
i rheMac8.chr6                   I 2 C 0
s macFas5.chrUn_KE146020             51419 41 -     71016 -----------tatatatatatatatatatttttgttt-----tgttttgttttttt
i macFas5.chrUn_KE146020         I 2 C 0
s macNem1.NW_012017243v1            302041 39 +  25972781 -----------TATATAtttttttgtttttttttgttt-------tttttttttttt
i macNem1.NW_012017243v1         I 2 C 0
s chlSab2.chrUn_KE147541v1          161596 37 -    811265 -----------TATATATAttttttgttttttttgttt---------ttgttttttt
i chlSab2.chrUn_KE147541v1       I 4 C 0
s manLeu1.NW_012108508v1            146596 35 -    350446 -----------TATATAttttttttgttttttttgttt---------t--ttttttt
i manLeu1.NW_012108508v1         I 2 C 0
s otoGar3.GL873584                  252969 23 +  11138919 TCCACATTTCACCTGTATTTCTT----------------------------------
i otoGar3.GL873584               C 0 I 3531
e saiBol1.JH378345                  228266 10716 +    465904 M
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=610931.000000
s hg38.chrX_KI270880v1_alt          170128 187 +    284869 gggacagggtcttgctctgtcacccaggctggagtgcagtggcgtgatcttggc-tcactgcaacctctgcctcccgggttcaa------gc-cttgcctcagcctcccaagtagctggaatt-acaggc-atgcacca--tcatgcccagctaat-ttttgtatttttagtaaagatggggtttcaccatgttggtcag
s panTro5.chrX                      336633 193 + 155549662 gggacagggtcttgctctgtcacccaggctggagtgcagtggcgtgatcttggc-tcactgcaacctctgccccccgggttcaagcgattgc-cctgcctcagcctcccatgtagctggaatt-acaggc-atgcacca--ccatgcccagctaat-ttttgtatttttagtaaagatggggtttcacagtgttggtcag
i panTro5.chrX                   C 0 I 4
s panPan2.chrUn_NW_014024190v1       81813 193 -    177848 gggacagggtcttgctctgtcacccaggctggagtgcagtggcgtgatcttggc-tcactgcaacctctgccccccgggttcaagcgattgc-cctgcctcagcctcccatgtagctggaatt-acaggc-atgcacca--ccatgcccagctaat-ttttgtatttttagtaaagatggggtttcacagtgttggtcag
i panPan2.chrUn_NW_014024190v1   C 0 I 4
s gorGor5.CYUI01015925v1            240221 198 +    417917 ggatcagggtcttgctctgtcacccaggctggagtgcagtggcatgatcttggcttcactgcaacttctgcctcctgggttcaagcgattgc-cctgcctcagcctcccaagtagctggaattcacaggcaatgcaccaccccatgcccagctaatcttttgtatttttagtaaagatggggtttcaccatgttttctg-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23000 193 +     35312 gagacagagtcttgctctgtcacccaggctggagtgcagcggcatgatcttggc-tcactgcaacgtgtgtcacccgggttcaagcgattct-cctgcctcagcctcccaagtagctggaatt-acaggc-atgcccca--ccacgcccagctaat-ttttgtatttttagtagagatggggtttcaccacgttggccag
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143301909 192 + 180051392 gagatggtgtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagc-tcactgcaacctctgcctcccaggttcaagcgattct-cctgcctcagtctcccgagtagctgggact-acaggc-acctgcca--ccacgcccggctaa--ttttgtatttttagtagagatggggtttcaccacgttgcccag
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             51460 191 -     71016 gagatggtgtcttgctctgtcac-caggctggagtgcagtggtgcgatctcagc-tcactgcaacctctgcctcctgggttccagcgattct-cctgcctcagcctcccgagtagctgaaatt-acaggc-acctgcca--ccacgcccggctaa--ttttgtatttttagtagagacggggtttcaccatgttgcccag
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            302080 189 +  25972781 gagatggtgtcttgctctgtcacacaggctggagtgcagtggtgcgat-tcagc-tcactgcaacctctgcctcct-ggttccagcgattctccctgcctcagcctcccgagtagctgaaatt-acaggc-acctgcca--acacg--cgcttaa--ttttgtatttttagtggagacggggtttcaccatgttgcccag
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          161633 193 -    811265 gagatggagtcttgctctgtcacccagactagagtgcagtggtgtgatctcggt-tcactgcaacctccgcctcccgggttcaagcgattct-cctgcctgagcctcccgagtagctgggatc-acaggc-acctgcca--ccacgcccggctaat-ttttgtatttttagtagagacagggtttcaccacattgcccag
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            146631 193 -    350446 gagatgatgtcttgctctgtctcccaggctggagtgcagtgacgcgatctcagc-tcactgtaacctccgcctcccaggttccagcgattct-cctacctcagcctcccgagtagctgaaatt-acaggc-acctgcca--ccatgcccggctaat-ttttgtatttttagtagagacagggtttcaccacgttgcccag
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I

a score=128781.000000
s hg38.chrX_KI270880v1_alt          170315 64 +    284869 gctggt-ctcgaa-ctgctgacctca--ggtgatttgcctgcctcggcctcccaaagtgctgggatta
s gorGor5.CYUI01015925v1            240419 64 +    417917 gctggt-ctcgaa-ctgctgacctcagtgatgatctgcccgcctcggccctccaaag-gct-ggatta
i gorGor5.CYUI01015925v1         C 0 I 22
s nomLeu3.chrX_GL398042_1_random     23193 64 +     35312 gctggt-ctcaaa-ctcctgacctca--ggtgatctgcccgctttggcctcccaaagtgctgggatta
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143302101 64 + 180051392 gctggt-ctcaaa-ctccggacctca--ggtgatttccccacctcagcctcccaaagtgccgggatta
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             51651 64 -     71016 gctggt-ctcaaa-ctcccgacctca--ggtgatttccccacctcggcctcccaaagtgccgggatta
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            302269 66 +  25972781 gctggtcctcaaatctcccgacctca--ggtgattctcccaccttggcttcccaaagtgccgggatta
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          161826 64 -    811265 gctggt-ctcaaa-ctcccgacctca--ggtgatttccccacctcggcctcccaaagtgccaggatta
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            146824 64 -    350446 gctagt-ctcgaa-ctcctgacctca--ggtgatttccccacctcggcctcccaaagtgccgggatta
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt          170379 1 +    284869 c
s nomLeu3.chrX_GL398042_1_random     23257 1 +     35312 c
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143302165 1 + 180051392 c
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             51715 1 -     71016 c
i macFas5.chrUn_KE146020         C 0 C 0
s macNem1.NW_012017243v1            302335 1 +  25972781 c
i macNem1.NW_012017243v1         C 0 I 9199
s chlSab2.chrUn_KE147541v1          161890 1 -    811265 c
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            146888 1 -    350446 c
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826 4 + 155549662 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e gorGor5.CYUI01015925v1            240483 22 +    417917 I
e panPan2.chrUn_NW_014024190v1       82006 4 -    177848 I

a score=14406.000000
s hg38.chrX_KI270880v1_alt          170380 13 +    284869 aggcatgagccac
s nomLeu3.chrX_GL398042_1_random     23258 13 +     35312 aggcgtgagccac
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143302166 13 + 180051392 gggtgcgaaccac
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             51716 13 -     71016 gggcgtgaaccac
i macFas5.chrUn_KE146020         C 0 C 0
s chlSab2.chrUn_KE147541v1          161891 13 -    811265 aggcgcgaaccac
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            146889 13 -    350446 gggcgcgaaccac
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            302336 9199 +  25972781 I
e gorGor5.CYUI01015925v1            240483 22 +    417917 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=59998.000000
s hg38.chrX_KI270880v1_alt          170393 53 +    284869 cgcgcccggccCTTCATGT-------ACATTTG---AAGCTAC-ATTTC-ATGACTTAAtt--------ttta
s gorGor5.CYUI01015925v1            240505 72 +    417917 cgcgcccggccCTTTAATTATGCCTAACATTTGCAAAAGCTACAATTTCAATGA-TTAACTGtttttaattta
i gorGor5.CYUI01015925v1         I 22 C 0
s nomLeu3.chrX_GL398042_1_random     23271 57 +     35312 cacacccggccCTTCATGT-------ACATTTG---AAGCTAC-ATTTC-ACGACTTAATT----tttgttta
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143302179 53 + 180051392 ggcgcccggccCGTCTTCT-------GCATTTG---AAGCTAC-GTTTC-CTGACTTAATT--------TTTA
i rheMac8.chr6                   C 0 I 5289
s macFas5.chrUn_KE146020             51729 53 -     71016 ggcgcccggccCATCTTCT-------GCATTTG---AAGCTAC-GTTTC-CTGACTTAATT--------TTTA
i macFas5.chrUn_KE146020         C 0 I 13760
s chlSab2.chrUn_KE147541v1          161904 53 -    811265 ggcgcccgtccCTTCTTCT-------GCATTTG---AAGCTTC-ATTTC-CTGACTTAATT--------TTTA
i chlSab2.chrUn_KE147541v1       C 0 I 7216
s manLeu1.NW_012108508v1            146902 53 -    350446 ggcacccggccCGTCTTCT-------GCATTTG---AAGCTAC-GTTTC-CTGACTTAATT--------TTTA
i manLeu1.NW_012108508v1         C 0 I 6388
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e macNem1.NW_012017243v1            302336 9199 +  25972781 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=17384.000000
s hg38.chrX_KI270880v1_alt          170446 157 +    284869 tttatttattttgagatggagtc--tggctctgtt--gtccaggctgaagtgcagtggtacaatctcggctcactgcaa-cctctgcctccctg-gttcacgccattctcctgcctcagtctcc-tgagtagctgggact---acagg--cgcccaccaccacgtcc--ag
s gorGor5.CYUI01015925v1            240577 171 +    417917 ttcatttattttgagatggagtccttggctctggtccgcccaggctggagtgcagtggcacaatctctgctcactgcaaccctccgcctccccgcgttcacgccattctactgcctcagcctccgctagtagctgggactggggcagggccacctgccaccatgtcccggg
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23328 143 +     35312 tttatttattttgagatggagtc--tcgctctgtt--gcccaggctggagtg--------ttagccaggctgg-------tctcgatctcctga-cctcaggtgatctgcccgcctcggcctcc-caaagtgctgggatt---acagg--cgtgagccaccatgccc--gg
i nomLeu3.chrX_GL398042_1_random C 0 I 59
e manLeu1.NW_012108508v1            146955 6388 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143302232 5289 + 180051392 I
e macNem1.NW_012017243v1            302336 9199 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=34919.000000
s hg38.chrX_KI270880v1_alt          170603 603 +    284869 ataattttttgtattatttagtagagac---ggggtttcaccgca--ttagccaggatggtctcaatctcctgacctcgtgatccacctg-tctcagcttc-ccaaagcgctgggattacaggcatgagccactgtgtgctgggattacaggcatgagccactgtgtctggccAT-GTACTTTT-AAAACACAG-TAATTggccaggcatggtggctcatgcct-gtaatcccagcacttt-gggagg-ccaagg-caggaggattgccagaggccaggcattcaagaccagcctg-ggcaacttagggagaccctatctttacaaaaaat--aaaaataaaaaaagtagccaggt-gtggtgtcccttgtctgt-ggtct--cagctactcaggga-ggcagaggttgcagtgagctgtggtctcagcttgtctgtggtctcagctactcagggaggctgaagtgggag--gattgcttgagcccaggagttggaggctgcaatgagcc-aagattg-cacca-ccgccctccagcctgg-gcagcagacagagaccctgtaa-gaaacaca----------aagagaaagaGaagaaagagacaggatggaaggaaggaaggaaggaaggaaggaaggaa
s gorGor5.CYUI01015925v1            240748 608 +    417917 ctaatttttataattatttagtagagacacggggttttcaccatagtttactgaggaatgtctcaatctcctgaccttgtgatccgcctgttctcggcttcaccaaagtgctggga------------------------------tacaggcatgagccactgtgtctggccATGGTACTTTtaaaaacacagttaattggccaggcatggtggctcattcctggtaatcccagcactttggggaggcccaaggccaggaggattgccaga-gccaggcattcaagaccagcctgtggcaacttaggagacccctaac-ttacaaaaaataaaaaaaaaaaaaaagtagtcaggtagtggtgtcccttgtctgtgggtcctacagctactcagAGATGGCACAGGTTGCAGTGAGCTGTGGTCTCAGTTTgtctgtggtctcagctactcagggaggctgaagtgggaggagatcgcttgagccca-gagttggaggctgcagtgagccgaagattgccaccacccgccctccagcctggtgcagcagagag-gaccctgtaaggaaacacacgagagaaagaagagaaaGAgaagaaagagacaggatggaaggaaggaaggaaggaaaaaaggaaagaa
i gorGor5.CYUI01015925v1         C 0 I 1378
e manLeu1.NW_012108508v1            146955 6388 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471  59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143302232 5289 + 180051392 I
e macNem1.NW_012017243v1            302336 9199 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt          171206 370 +    284869 ggaaggaaggaaggaaaaagaagaaagaaagaaagaaagaagaaaaggaaggaaggaaaaagaaagagacagaggggaagaaaggaatgaaagaagaaaaaagaaagtaagagaaagaaaagaaagaaagaggaagaaaggaaggaaggaaaaaagaaagaaagagacaggaagaaaggaaggaaagaaggaaaaaagaaagacaagaaaaagaaacgaagggaaaggaagaaaggaaggaaggaagaaagaaaagaaagacaaagacagaaaggaagaaaggaaggaaggaaggaaaaagaaatgaaagaaaagaaagagaaaagagagacaaaaaggctgtaagaaaggaaAAGCAATGATGCCTCAT
e manLeu1.NW_012108508v1            146955 6388 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471  59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            207894 6257 -   1025902 I
e colAng1.NW_012115411v1            308141 1939 +   1230721 I
e rheMac8.chr6                   143302232 5289 + 180051392 I
e macNem1.NW_012017243v1            302336 9199 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            241356 1378 +    417917 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=3242.000000
s hg38.chrX_KI270880v1_alt          171576 4 +    284869 ACTG
s macNem1.NW_012017243v1            311535 4 +  25972781 ACTA
i macNem1.NW_012017243v1         I 9199 C 0
s cerAty1.NW_012001098v1            214151 4 -   1025902 ACTA
i cerAty1.NW_012001098v1         I 6257 C 0
s manLeu1.NW_012108508v1            153343 4 -    350446 ACTA
i manLeu1.NW_012108508v1         I 6388 C 0
s colAng1.NW_012115411v1            310080 4 +   1230721 ACTA
i colAng1.NW_012115411v1         I 1939 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471 59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826 4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e rheMac8.chr6                   143302232 5289 + 180051392 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            241356 1378 +    417917 I
e panPan2.chrUn_NW_014024190v1       82006 4 -    177848 I

a score=25341.000000
s hg38.chrX_KI270880v1_alt          171580 20 +    284869 GATTAAGTTACCCATGAAAT
s rheMac8.chr6                   143307521 20 + 180051392 GATTAAATTACCCATGAAAT
i rheMac8.chr6                   I 5289 C 0
s macNem1.NW_012017243v1            311539 20 +  25972781 GATTAAATTACCCATGAAAT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214155 20 -   1025902 GATTAAATTACCTGTGAAAT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            153347 20 -    350446 GATTAAATTACCTGTGAAAT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310084 20 +   1230721 GATTAAATTACCCATGAAAT
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471 59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            241356 1378 +    417917 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=346818.000000
s hg38.chrX_KI270880v1_alt          171600 225 +    284869 CTAAGCTTGGTTCCTTAAGCCTCGCCTCTTTGAAGAGGAATCCAATTCTGAAATGAATGACACTTTTGGGGGGCCTC-ATGCCGTGGGGAGCTTAGATTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATTCCAGGT-CCTACCCTTTCC-TGCTCAG-TCCTCAGACA--ATTTATAA--AACTTGCC-TAAACTCACATT-TTTATCTGGT--AATTTGTGACTTGCAGAATGAACG
s gorGor5.CYUI01015925v1            242734 239 +    417917 CTAAGCTTGGTTCCTTAAGCCTCGCCTCTTTGAAGAGGAATCCAATCCTGAAATGAATGGCATTTTTGGGGGGCCTCCATGCCGTGGG-AGCTTAGATTGTCTTTGAAACTGGGCCTCCTGAGTTTGAAATTCCAGGTTCCTACCCTTTCCCTGCCCGGGTCCTCAGACACCATTTATAATAAACTTGCCCTAAACTCACATTATTTATCTGGGTAAATTCGTGACTCGCAGAATGAACG
i gorGor5.CYUI01015925v1         I 1378 C 0
s rheMac8.chr6                   143307541 223 + 180051392 CTAAACTTGGTTCCTTAAGCCCCGACACTTTGAAGAGAGACCCAATCCAGAAGTGAGTGGCATTTT-GGGGGGCCTC-ATGCCGTGGGGAGCTGAGACTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATT-TGGGT-CCTACCCTCCCC-TGCCCAG-TCCTCAGACA--GTTTATAA--AAGTTGCC-TAGGCTCACATT-TTTATCTGGT--AATTCAAGACTCGCAGAATGAATG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            311559 224 +  25972781 CTAAACTTGGTTCCTTAAGCCCCGACACTTTGAAGAGAGACCCAATCCAGAAGTGAGTGGCATTTTGGGGGGGCCTC-ATGCTGTGGGGAGCTGAGACTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATT-TGGGT-CCTACCCTCCCC-TGCCCAG-TCCTCAGACA--GTTTATAA--AAGTTGCC-TAGACTCACATT-TTTATCTGGT--AATTCAAGACTCGCAGAATGAATG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214175 225 -   1025902 CTAAGCTTGGTTCCTTAAGCCCCGACACTTTGAAGAGATACCCAATCCAGAAGTGAGTGGCATTTTTGGGGGTCCTC-ATGCCGTGGGGAGCTGAGATTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATTCTGGGT-CCTACCCTCTCC-TGCCCAG-CCCTCAGACA--GTTTATAA--AAGTTGCC-TAGACTCACATT-TTTATCTGGT--AATTCAAGACTCGCAGAATGAATG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            153367 225 -    350446 CTAAGCTTGGTTCCTTAAGCCCCGACACTTTGAAGAGATACCCAATCCAGAAGTGAGGGGCATTTTTGGGGGTCCTC-ATGCCGTGGGGAGCTGAGATTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATTCTGGGT-CCTACCCTCTCT-TGCCCAG-TCCTCAGACA--GTTTATAA--AAGTTGCC-TAGACTCACATT-TTTATCTGGT--AATTCAAGACTCGCAGAATGAATG
i manLeu1.NW_012108508v1         C 0 I 459
s colAng1.NW_012115411v1            310104 225 +   1230721 CTAAGCTTGGTTCCTTAAGTCCCAACACTTTGAAGAGATATCCAATCCAGAAATGAGTGGCATTTTCGGGGGGCCTC-ATATCGTGGGGAGCTGCGATTGTCTTTGAAACTGG-CCTC-TGAGTT-GAAATTCTGGGT-CCTACCCTCTCC-TGCCCAG-TCCTCAGACA--ATTGATAA--AACTTGCG-TAGACTCACATT-TTTATCGGGT--AATTCGAGACTCGCAGAACGAATG
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471  59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=162140.000000
s hg38.chrX_KI270880v1_alt          171825  99 +    284869 CAAGAAAACAGAGACGACAT---TGTAAAGTAGCTGG-CCATCGTATTTTT-CTTGGAAGAGACAGTATCCTTAAATTAATGCTAA-TATTTTAAACAC--TGGCCC
s gorGor5.CYUI01015925v1            242973 107 +    417917 CAAGAAAACAGAGACGACATGTGTGTAAAGTAGCTGGGCCATCGTATTTTTTCTTGGAAGAGACAGTATCCTTAAATGAATGCTAAGTATTTTAAACACGCCGGCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143307764  99 + 180051392 CAAGAAAACAGAGACGACCT---TGTAGAGTAGCTGG-CCGTCGTATTTTT-CTTGGAAGACAGAGTATCCTTAAATTAATGCTAA-CATTTGAAATAC--CGGCCC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            311783  99 +  25972781 CAAGAAAACAGAGACGACCT---TGTAGAGTAGCTGG-CCGTCGTATTTTT-CTTGGAAGACAGAGTATCCTTAAATTAATGCTAA-CATTTGAAATAC--CGGCCC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214400  99 -   1025902 CAAGAAAACATAGACGACCT---TGTAGAGTAGCTGG-CCGTCGTATTTTT-CTTGGAAGACAGAGTATCCTTAAATTAATGCTAA-CATTTGAAATAC--TGGCCC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154051  99 -    350446 CAAGAAAACATAGACGACCT---TGTAGAGTAGCTGG-CCGTCGTATTTTT-CTTGGAAGACAGAGTATCCTTAAATTAATGCTAA-CATTTGAAATAC--CGACCC
i manLeu1.NW_012108508v1         I 459 C 0
s colAng1.NW_012115411v1            310329  99 +   1230721 CAAGAAAACAGAGACGACAT---TGTAGAGTAGCTGG-CCGTCGCATTTTT-CTTGGAAGACACAGTATCCTTAAATTAATGCTAA-CATTTGAAATAC--TGGCCC
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e nomLeu3.chrX_GL398042_1_random     23471  59 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=437160.000000
s hg38.chrX_KI270880v1_alt          171924 204 +    284869 ACTGATCATGAACACCC-AATTCCT-GGGTTCCTTGAAATATTTTTGGAAGGGGCGGCCAA-CCCGTGCCTT-CATTCTTGCCCAACACCAGTGGGCTGGATGGGATgttcgccgcagtctccactgctccccgatgtctctctcacatcaggcctgcctt----actgacctgacctgcc-tcctcctgcaagcatttgagtctgGAATTTT
s gorGor5.CYUI01015925v1            243080 206 +    417917 ACTGATCATGAACACCCCAATTCCT-GGGTTCCTTGAAATATTTTTGGAAGAGGTGGCCAAACCCGTGCCTTTCATTCTTGCCCAACACCAG-GGGCTGGATGGGATgttcgccgcagtctccactgctcccc-atgtctctctcacatcaggcctgcctt----actgacctgacctgccctcctcctgcaagcatttgagtctgGAATTTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23530 208 +     35312 attgatCGTGAACATCC-AATTCCTGGGGTTCCTTGAAATATTTTGGGAAGAGGCGGCCGA-CCTGTGGCTT-CATTCTTGCCCAACACCAGTGGGCTGGATGGGACgttcgccgcagtctccactgctccctgctgtctgtctcacgtcaggcctgccttactcactgacctgacctgcc--tcttctgcaagcatttgagtctgagatttt
i nomLeu3.chrX_GL398042_1_random I 59 C 0
s rheMac8.chr6                   143307863 208 + 180051392 ATTGATCATGGACACAC-GATTCCT-GGATTCCTTGAAATATTTTTGGAAGTGGCAGCCCA-CGCGTTCCTT-CGTTCTTGCCCAACACCAGTGGGCTGGATGGGATGTTCGCCGCAGTCTCCACCGCTCCCTGATGTCTCTCTCACGTCAGGTCCGCCTGACTCACTGACATGACCTGCC-TACTCCTGTAAGCGTTTGAGTCTGGGATGTT
i rheMac8.chr6                   C 0 I 7
s macNem1.NW_012017243v1            311882 208 +  25972781 ATTGATCATGGACACAC-GATTCCT-GGATTCCTTGAAATATTTTTGGAAGTGGCAGCCCA-CGCGTTCCTT-CGTTCTTGCCCAACACCAGTGGGCTGGATGGGACgttcgcagcagtctccaccgctccctgatgtctctctcacgtcaggtccgcctgactcactgacatgacctgcc-tactcctgtaagcgtttgagtctgggaTGTT
i macNem1.NW_012017243v1         C 0 I 7
s cerAty1.NW_012001098v1            214499 207 -   1025902 GTTGATCATGGACACAC-AATTCCT-GGATTCCTTGAAATA-TTTTGGAAGTGGCAGCCCA-CGTGCTCCTT-CGTTCTTGCCCAACACCAGTGGGCTGGATGGGACGTTCGCTGCAGTCTCCACCGCTCCCTGATGtctctctcacgtcaggtccgcctgactcactgacatgacctgcc-tactcctgtaagcgtttgagtctgggaTGTT
i cerAty1.NW_012001098v1         C 0 I 7
s manLeu1.NW_012108508v1            154150 208 -    350446 GTTGATCATGGACACAC-GATTCCT-GGATTCCTTGAAATATTTTTGGAAGTGGCGGCCCA-CGTGCTCCTT-CGTTCTTGCCCAACACCAGTGGGCTGGATGGGACgttcactgcagtctccaccgctccctgatgtctctctcacgtcaggtccgcctgactcactgacatgacctgcc-tactcctgtaagcgtttgagtctgggaTGTT
i manLeu1.NW_012108508v1         C 0 I 7
s colAng1.NW_012115411v1            310428 208 +   1230721 ATTGAGCATGGACACGC-GATTCCT-GGATTCCTTGAAATATTTTTGGAAGTGGCAGCCCA-CCCGTGCCTT-CCTTCTTGCCCAACACCAGTGGGCTGGATGGGACgttcaccgcagtctccaccgctccctgatgtctctctcacgtcaggtccgccttactcactgacatgacctgcc-tactcctgtaagcatttgagtctgggaTGTT
i colAng1.NW_012115411v1         C 0 I 1
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826   4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006   4 -    177848 I

a score=11776.000000
s hg38.chrX_KI270880v1_alt          172128 43 +    284869 T-TTGATGTGCAGAAACAATGCCTGT--AAAACACCCAGTACAGGG
s gorGor5.CYUI01015925v1            243286 45 +    417917 T-TTGATGTGCAGAAACAATGCCTGTTAAAAACACCCAGTGCAGGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23738 41 +     35312 tgCTGATATGCAGAAACAATGCCTGT--AAAACAT---GTAGGGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s colAng1.NW_012115411v1            310637 43 +   1230721 -GCTAACGTGCAGAAACGAGGCCTGT--AAGGTCCCCAGTGTGGGG
i colAng1.NW_012115411v1         I 1 C 0
e manLeu1.NW_012108508v1            154358  7 -    350446 I
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            214706  7 -   1025902 I
e rheMac8.chr6                   143308071  7 + 180051392 I
e macNem1.NW_012017243v1            312090  7 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=150441.000000
s hg38.chrX_KI270880v1_alt          172171 67 +    284869 GTGCTGAAGACATGTTCGTTCAACATGAGCTGAAG-CATTCTTAGAGGCAGGTGCTGGTACACCCACA
s gorGor5.CYUI01015925v1            243331 68 +    417917 GTGCTGAAGACATGTTCGTTCAACCAGAGCTACAGTCATTCTTAGAGGCAGGTGGTGTTACACCCACA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23779 67 +     35312 GTGCTGAAGACGTGTTCGTTCAACATGAGCTAAAG-CATTCTTAGAGGCAGGTGCTGGTACAGCCACA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308078 67 + 180051392 GTGCTGACGACGTGTTTGTTCAACATGAGCTAAAG-TATTCTGAGAGGCAGGTGCTGGCACACCCACA
i rheMac8.chr6                   I 7 C 0
s macNem1.NW_012017243v1            312097 67 +  25972781 GTGCTGACGACGTGTTTGTTCAACATGAGCTAAAG-TATTCTGAGAGGCAGGTGCTGGCACACCCACA
i macNem1.NW_012017243v1         I 7 C 0
s cerAty1.NW_012001098v1            214713 67 -   1025902 GTGCTGACGACGTGTTTGTTCAACATGAGCTAAAG-TATTCTGAGAGGCAGGTGCTGGCACACCCACA
i cerAty1.NW_012001098v1         I 7 C 0
s manLeu1.NW_012108508v1            154365 67 -    350446 GTGCTGACGACGTGTTTGTTCAACATGAGCTAAAG-TATTCTGAGAGGTAGGTGCTGGCACACCCACA
i manLeu1.NW_012108508v1         I 7 C 0
s colAng1.NW_012115411v1            310680 67 +   1230721 GTGCTGATGACGTGTTTGTTCAACATGAGCTGAAG-TATTCTTAGAGGCAGGTGCTGGCACACCCACA
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  228266 10716 +    465904 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826  4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006  4 -    177848 I

a score=15336.000000
s hg38.chrX_KI270880v1_alt          172238 5 +    284869 TGCAC
s gorGor5.CYUI01015925v1            243399 4 +    417917 -GCAC
i gorGor5.CYUI01015925v1         C 0 I 1
s nomLeu3.chrX_GL398042_1_random     23846 5 +     35312 TGCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308145 5 + 180051392 TGTAC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312164 5 +  25972781 TGCAC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214780 5 -   1025902 TGCAC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154432 5 -    350446 TGCAC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310747 5 +   1230721 TGCAC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  238986 5 +    465904 TGCAC
i saiBol1.JH378345               M 10716 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336826 4 + 155549662 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82006 4 -    177848 I

a score=135854.000000
s hg38.chrX_KI270880v1_alt          172243 32 +    284869 TGGAGACTCTGAGATGAGCATTGCAGACTCTG
s panTro5.chrX                      336830 32 + 155549662 TGGAGACTCTGAGATGTGCTTTGGAGGCTCTG
i panTro5.chrX                   I 4 C 0
s panPan2.chrUn_NW_014024190v1       82010 32 -    177848 TGGAGACTCTGAGATGTGCTTTGGAGGCTCTG
i panPan2.chrUn_NW_014024190v1   I 4 C 0
s gorGor5.CYUI01015925v1            243404 32 +    417917 TGGAGACTCTGAGATGTGCATTGCAGACTCTG
i gorGor5.CYUI01015925v1         I 1 C 0
s nomLeu3.chrX_GL398042_1_random     23851 32 +     35312 TGGAGACTCTGAGATGGGCATTGCAGACTCTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308150 32 + 180051392 TGGAGACTCTGAGGTGAGCATTGGAGATTCTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312169 32 +  25972781 TGGAGACTCTGAAGTGTGCATTGGAGATTCTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214785 32 -   1025902 TGGAGACTCTGAGGTGTGCATTGGAGAATCTG
i cerAty1.NW_012001098v1         C 0 I 2
s manLeu1.NW_012108508v1            154437 32 -    350446 TGGAGACTCTGAGGTGTGCACTGGAGACTCTG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310752 32 +   1230721 TGGAGACTCTGAGATGCATATTGGAGATTCTG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  238991 32 +    465904 TGGAGACTCTGAGGTGTGCACTGGAGACTCTG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=54523.000000
s hg38.chrX_KI270880v1_alt          172275 16 +    284869 AGATGTGCACTGGAGA
s panTro5.chrX                      336862 16 + 155549662 AGGTGTCCATTGGAGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82042 16 -    177848 AGGTGTCCATTGGAGA
i panPan2.chrUn_NW_014024190v1   C 0 T 49
s gorGor5.CYUI01015925v1            243436 16 +    417917 AGATGTGCATTGGAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23883 16 +     35312 AGATGCGCACTGGAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308182 16 + 180051392 AGGTGCGCACTGGAGA
i rheMac8.chr6                   C 0 I 27
s macNem1.NW_012017243v1            312201 16 +  25972781 AGGTGCGCACTGGAGA
i macNem1.NW_012017243v1         C 0 I 27
s manLeu1.NW_012108508v1            154469 16 -    350446 AGATGCGCACTGGAGA
i manLeu1.NW_012108508v1         C 0 I 9678
s colAng1.NW_012115411v1            310784 16 +   1230721 AGATGTGCACTGGAGA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239023 16 +    465904 ACGTGTGCACTGGAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            214817  2 -   1025902 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=6762.000000
s hg38.chrX_KI270880v1_alt          172291 6 +    284869 TTCTGA
s gorGor5.CYUI01015925v1            243452 6 +    417917 TTCTGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23899 6 +     35312 TTCTGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s manLeu1.NW_012108508v1            164163 6 -    350446 TTCTGA
i manLeu1.NW_012108508v1         I 9678 I 1
s colAng1.NW_012115411v1            310800 4 +   1230721 --CTGA
i colAng1.NW_012115411v1         C 0 I 1
s saiBol1.JH378345                  239039 6 +    465904 CTCTGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336878 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            214817 2 -   1025902 I
e rheMac8.chr6                   143308198 27 + 180051392 I
e macNem1.NW_012017243v1            312217 27 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82058 49 -    177848 T

a score=700.000000
s hg38.chrX_KI270880v1_alt          172297 1 +    284869 A
s gorGor5.CYUI01015925v1            243458 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23905 1 +     35312 A
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            214819 1 -   1025902 A
i cerAty1.NW_012001098v1         I 2 C 0
s manLeu1.NW_012108508v1            164170 1 -    350446 A
i manLeu1.NW_012108508v1         I 1 C 0
s colAng1.NW_012115411v1            310805 1 +   1230721 A
i colAng1.NW_012115411v1         I 1 C 0
s saiBol1.JH378345                  239045 1 +    465904 G
i saiBol1.JH378345               C 0 I 1
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336878 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e rheMac8.chr6                   143308198 27 + 180051392 I
e macNem1.NW_012017243v1            312217 27 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82058 49 -    177848 T

a score=10608.000000
s hg38.chrX_KI270880v1_alt          172298 6 +    284869 TGGGCA
s gorGor5.CYUI01015925v1            243459 4 +    417917 ATGG--
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23906 6 +     35312 TGGGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308225 6 + 180051392 TGGGCA
i rheMac8.chr6                   I 27 C 0
s macNem1.NW_012017243v1            312244 6 +  25972781 TGGGCA
i macNem1.NW_012017243v1         I 27 C 0
s cerAty1.NW_012001098v1            214820 6 -   1025902 TGGGCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164171 6 -    350446 TGGGCA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310806 6 +   1230721 TGGGCA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239047 6 +    465904 TGTGCA
i saiBol1.JH378345               I 1 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336878 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82058 49 -    177848 T

a score=153726.000000
s hg38.chrX_KI270880v1_alt          172304  84 +    284869 TTGGAGACTCTGAGATGGACACT-----------------------------------------------------------GGAGGCTCTGAGCTGTGCTTT------------------------------------------GGAGATTCTGAGATGCGCATTGGAGACTCTGAGGTGTGCA
s panTro5.chrX                      336878  56 + 155549662 ---------------------------------------------------------------------------------------CTCTCAGATGTGCATC------------------------------------------GGAGACTCTGAGATGGGCATTGGAGACTCTGAGATGTGCA
i panTro5.chrX                   C 0 T 105
s panPan2.chrUn_NW_014024190v1       82009  63 -    177848 ---------------------TT-----------------------------------------------------------GGAGACTCTGAGATGTGCTTT------------------------------------------GGAGGCTCTGAGGTGTCCATTGGAGACTCTCAGATGTGCA
i panPan2.chrUn_NW_014024190v1   T 49 T 63
s gorGor5.CYUI01015925v1            243463  65 +    417917 -------------------CACT-----------------------------------------------------------GGAGGCTTTGAGATGTGCTTT------------------------------------------GGAGATTCTGAGATGTGCATTGGAGACTCTGAGGTGTGCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23912  83 +     35312 TTGGAGACTCTGAGATGGGCATT-----------------------------------------------------------GCAGACTCTGAGATGCGCACT------------------------------------------GGAGATTCTGA-ATGGGCATTGGAGACTCTGAGATGGGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308231 181 + 180051392 TTGGAGAATCTGAGATGGGCATGGGAGACTGAGATGGGCCTTGGAGACTCAGGTGGGCATTGGAGACTCTGAGGTGTGCTTTGGAGACTCTGAGATGGGCATTGCAGACCCTGAGGTGGGCATTGGAGAATCTGAGATGGGCATGGGAGA--CTGAGATGGGCCTTGGAGACTC--AGGTGGGCA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312250  59 +  25972781 TTGGAGAATCTGAGATGGGCATG--------------------------------------------------------------------------------------------------------------------------GGAGA--CTGAGATGGGCCTTGGAGACTC--AGGTGGGCA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214826  84 -   1025902 TTGCAGACCCTGAGGTGGGCATT-----------------------------------------------------------GCAGACTCTGAAATGTGTGTT------------------------------------------GGAGACTCTGAGATGCGATTTGGAGACTCTGAGGTGGGCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164177  84 -    350446 TTGCAGACCCTGAGGTGGGCATT-----------------------------------------------------------GCAGACTCTGAAATGTGTGTT------------------------------------------GGAGACTCTGAGATGCGATATGGAGACTCCGAGGTGGGCA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310812  84 +   1230721 TTGGAGACTCTGAGGTGTACATT-----------------------------------------------------------GGAGACTCTGAGATGGGCATT------------------------------------------GGAGACTCTGAGATGGGCATTGCAGACCCTGAGGTGGGCA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239053  61 +    465904 ---------------------TT-----------------------------------------------------------GCAGACTTTGAGGTGTGCACT------------------------------------------GGAGA--CTGAGGTGTGCATTGGAAACTCTGAGGTGTGCA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=118703.000000
s hg38.chrX_KI270880v1_alt          172388 36 +    284869 TTGGAGACTCTGAGATGGAC-------------------ACTGGAGGC--------------------TCTGAGC
s panTro5.chrX                      336829 36 + 155549662 TTGGAGACTCTGAGATGTGC-------------------TTTGGAGGC--------------------TCTGAGG
i panTro5.chrX                   T 105 C 0
s panPan2.chrUn_NW_014024190v1       82009 36 -    177848 TTGGAGACTCTGAGATGTGC-------------------TTTGGAGGC--------------------TCTGAGG
i panPan2.chrUn_NW_014024190v1   T 63 C 0
s gorGor5.CYUI01015925v1            243528 56 +    417917 TTGGAGACTCTGAGATGGAC-------------------ACTGGAGGCCTCGACTGTGCTTTGGAGATTCTGAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     23995 36 +     35312 TTGCAGACTCTGAGATGGGC-------------------ACTGGAGGC--------------------TCTGAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308412 36 + 180051392 TTGGAGACTCTGAGGTGTGC-------------------TTTGGAGAC--------------------TCTGAGA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312309 36 +  25972781 TTGGAGACTCTGAGGTGTGC-------------------TTTGGAGAC--------------------TCTGAGA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214910 35 -   1025902 TTGGAGACTCTGAGATGGGA--------------------TTGGAGAC--------------------TCTGAGA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164261 35 -    350446 TTGGAGACTCTGAGATGGGA--------------------TTGGAGAC--------------------TCTGAGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            310896 55 +   1230721 TTGCAGACTCTGAAATGTGCACGGGAGACTCAGATGGGCATTGGAAAC--------------------CCTGAGA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239114 36 +    465904 CTGGAGACTCTGACATGTGC-------------------ACTGGAGAC--------------------TCTGAGG
i saiBol1.JH378345               C 0 T 166
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=25373.000000
s hg38.chrX_KI270880v1_alt          172424 15 +    284869 TG--------------------------------------------TGCTTTGGAGATT
s panTro5.chrX                      336865 15 + 155549662 TG--------------------------------------------TCCATTGGAGACT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82045 15 -    177848 TG--------------------------------------------TCCATTGGAGACT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            243584 59 +    417917 TGTGCATTGGAGACTCTGAAGATGGGCAACTGGGAGACTAAAATGTTGCATTGGAGACT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24031 13 +     35312 TG--------------------------------------------GGCACTGGAGA--
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308448 15 + 180051392 TG--------------------------------------------GGCATTGCAGACC
i rheMac8.chr6                   C 0 I 21
s macNem1.NW_012017243v1            312345 15 +  25972781 TG--------------------------------------------GGCATTGCAGACC
i macNem1.NW_012017243v1         C 0 I 21
s cerAty1.NW_012001098v1            214945 15 -   1025902 TG--------------------------------------------TGATTTGGAGACT
i cerAty1.NW_012001098v1         C 0 I 21
s manLeu1.NW_012108508v1            164296 15 -    350446 TG--------------------------------------------TGATTTGGAGACT
i manLeu1.NW_012108508v1         C 0 T 9826
s colAng1.NW_012115411v1            310951 15 +   1230721 TG--------------------------------------------TGATTTGGAGACT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  238984 15 +    465904 TG--------------------------------------------TGCACTGGAGACT
i saiBol1.JH378345               T 166 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=280656.000000
s hg38.chrX_KI270880v1_alt          172439 76 +    284869 CTGAGATGTGCATTGGAGACTCTGAGC-------------------TGTGCTTTGGAGATTCTGAGATGTGCATTGGAGACTCTGAGATGGGCAC
s panTro5.chrX                      336880 76 + 155549662 CTCAGATGTGCATCGGAGACTCTGAGA-------------------TGGGCATTGGAGACTCTGAGATGTGCATTGGAGACTCTGAGATGGGCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82060 76 -    177848 CTCAGATGTGCATCGGAGACTCTGAGA-------------------TGGGCATTGGAGACTCTGAGATGTGCATTGGAGACTCTGAGATGGGCAC
i panPan2.chrUn_NW_014024190v1   C 0 T 127
s gorGor5.CYUI01015925v1            243643 76 +    417917 CTGAGGTGTGCTTTGGAGACTCTGAGA-------------------TGTGCTTTGGAGACTCTGAGGTGTGCATTGGAGACTCTGAGATGGGCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24044 76 +     35312 CTGAGATGGGCATTGGAGACTCTGAGA-------------------TGGGCACTGGAGACTCTGAGATGGGCATTGGAGACTCTGAGATGGGCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308484 76 + 180051392 CTGAAATGTGCGTTGGAGACTCTGAGA-------------------TGCGATTTGGAGACTCTGAGGTGGGCATTGGAGACTCTGAGATGGGCAT
i rheMac8.chr6                   I 21 C 0
s macNem1.NW_012017243v1            312381 72 +  25972781 CTGAAATGTGCTTTGGAGACTCTGAGG-------------------TGTGCATTGgaga--ctgagatgggcattggaga--ctgagatgggcac
i macNem1.NW_012017243v1         I 21 C 0
s cerAty1.NW_012001098v1            214981 95 -   1025902 CTGAGATGGGCATTGCAGACCCTGAGGTTGGCATTGCAGACTGAAATGTGCTTTGGAGACTCCGAGGTGTGCTTTGGAGACTCTGAGGTGGGCAT
i cerAty1.NW_012001098v1         I 21 C 0
s manLeu1.NW_012108508v1            154485 74 -    350446 CTGAGATGGACATTGCAGACTCTGAGG-------------------TGGGCATTGGAGACTCTGAGATGGGCATGGGAGA--CTGAGATGGGCCT
i manLeu1.NW_012108508v1         T 9826 C 0
s colAng1.NW_012115411v1            310966 74 +   1230721 --CAGGTGGGCATTGGAGACTCTGAGA-------------------TGTGATTTGGAGACTCTGAAATGTGCATTGGAGACTCTGAGATGGGCAT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  238999 76 +    465904 CTGAGGTGTGCACTGGAGACTCTGACG-------------------TGTGCACTGGAGACTCTGAGGTGTGCATTGCAGACTTTGAGGTGTGCAC
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=13534.000000
s hg38.chrX_KI270880v1_alt          172515 9 +    284869 TGGAGACTA
s nomLeu3.chrX_GL398042_1_random     24120 9 +     35312 TGGAGACTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308560 9 + 180051392 TGCAGACCC
i rheMac8.chr6                   C 0 I 2
s macNem1.NW_012017243v1            312453 9 +  25972781 tgcagacCC
i macNem1.NW_012017243v1         C 0 I 2
s cerAty1.NW_012001098v1            215076 9 -   1025902 TGCAGACCC
i cerAty1.NW_012001098v1         C 0 T 268
s manLeu1.NW_012108508v1            154559 9 -    350446 TGGAGACTC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            311040 9 +   1230721 GGGAGACTA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239075 9 +    465904 TGGAGACTG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336956 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            243719 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       82136 127 -    177848 T

a score=17365.000000
s hg38.chrX_KI270880v1_alt          172524 9 +    284869 AGATGTGCA
s nomLeu3.chrX_GL398042_1_random     24129 9 +     35312 AGATGGGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308571 9 + 180051392 AGGTGGGCA
i rheMac8.chr6                   I 2 C 0
s macNem1.NW_012017243v1            312464 9 +  25972781 AGGTGGGTA
i macNem1.NW_012017243v1         I 2 C 0
s cerAty1.NW_012001098v1            214817 9 -   1025902 AGATGGGCA
i cerAty1.NW_012001098v1         T 268 C 0
s manLeu1.NW_012108508v1            154568 9 -    350446 AGGTGGGCA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            311049 9 +   1230721 AGATGGGCC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239084 9 +    465904 AGGTGTGCA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      336956 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            243719 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       82136 127 -    177848 T

a score=117637.000000
s hg38.chrX_KI270880v1_alt          172533 39 +    284869 TTGGAGACTCTGAGGTGTGCTTTGGAGACTCTGAGATGT
s panTro5.chrX                      336956 17 + 155549662 ----------------------TGGAGACTCTGACGTGT
i panTro5.chrX                   C 0 T 147
s panPan2.chrUn_NW_014024190v1       82009 39 -    177848 TTGGAGACTCTGAGATGTGCTTTGGAGGCTCTGAGGTGT
i panPan2.chrUn_NW_014024190v1   T 127 T 42
s gorGor5.CYUI01015925v1            243719 37 +    417917 -TGGAGATTCTGAGATGTGCTTTGGAGAC-CTGAGGTGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24138 39 +     35312 TTGGAGACTCTGAGATGGGCATTGGAGATTCTGAGATGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308580 39 + 180051392 TTGCACACTCTGAAATGTGCGTTGGAGACTCTGAGATGC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312473 39 +  25972781 TTGCAGACTCTGAAATGTGCTTTGGAGACTCTGAGGTGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214826 39 -   1025902 TTGCAGACCCTGAGGTGGGCATTGCAGACTCTGAAATGT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154577 39 -    350446 TTGGAGACTCTGAGGTGTGCTTTGGAGACTCTGAGATGG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            311058 37 +   1230721 TTGGAAACTC--AGGTGGGCATTGGAGACTCTGAGATGG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239093 39 +    465904 TTGGAAACTCTGAGGTGTGCACTGGAGACTCTGACATGT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=138841.000000
s hg38.chrX_KI270880v1_alt          172572 38 +    284869 GCTTTGGAGACTCTGAGATGTGCTTTGGAGACTCTGAG
s panTro5.chrX                      336826 38 + 155549662 gctTTGGAGACTCTGAGATGTGCTTTGGAGGCTCTGAG
i panTro5.chrX                   T 147 C 0
s panPan2.chrUn_NW_014024190v1       82006 38 -    177848 gctTTGGAGACTCTGAGATGTGCTTTGGAGGCTCTGAG
i panPan2.chrUn_NW_014024190v1   T 42 C 0
s gorGor5.CYUI01015925v1            243756 37 +    417917 GCTTTGGAGACTTTGAGATG-GCTTTGGAGACTCTGAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24177 36 +     35312 GCACTGGAGACTCTGAGATGGGCACTGGAGA--CTGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308619 38 + 180051392 GATTTGGAGACTCTGAGGTGGGCATTGGAGACTCTGAG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312512 38 +  25972781 GCATTGGAGACTCTGAGATGTGATTTGGAGACTCTGAG
i macNem1.NW_012017243v1         C 0 I 1
s cerAty1.NW_012001098v1            214865 38 -   1025902 GTGTTGGAGACTCTGAGATGCGATTTGGAGACTCTGAG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154616 38 -    350446 GCATTGCAGACCCTGAGGTGGGCATTGCAGACTCTGAA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            311095 38 +   1230721 GCATTGCAGACCCTGAGGTGGGCATTGCAGACTCTGAA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239132 38 +    465904 GCACTGGAGACTCTGAGGTGTGCATTGGAGACTCTGAG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=37726.000000
s hg38.chrX_KI270880v1_alt          172610 14 +    284869 GTGTCCATTGGAGA
s panTro5.chrX                      336864 14 + 155549662 GTGTCCATTGGAGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82044 14 -    177848 GTGTCCATTGGAGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            243793 14 +    417917 GTGTCCATTGGAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24213 14 +     35312 ATGGGCACTGGAGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308657 14 + 180051392 GTGCGCATTGCATA
i rheMac8.chr6                   C 0 C 0
s cerAty1.NW_012001098v1            214903 14 -   1025902 GTGGGCATTGGAGA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154654 14 -    350446 ATGTGTGTTGGAGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            311133 14 +   1230721 ATGTGCGTTGGAGA
i colAng1.NW_012115411v1         C 0 M 5649
s saiBol1.JH378345                  239170 14 +    465904 GTGTGCACTGGAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macNem1.NW_012017243v1            312550  1 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=5348.000000
s hg38.chrX_KI270880v1_alt          172624 2 +    284869 CT
s panTro5.chrX                      336878 2 + 155549662 CT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82058 2 -    177848 CT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            243807 2 +    417917 CT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24227 2 +     35312 CT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308671 2 + 180051392 CT
i rheMac8.chr6                   C 0 I 21
s cerAty1.NW_012001098v1            214917 2 -   1025902 CT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154668 2 -    350446 CT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  239184 0 +    465904 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            311147 5649 +   1230721 M
e macNem1.NW_012017243v1            312550 1 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=29887.000000
s hg38.chrX_KI270880v1_alt          172626 10 +    284869 CTCAGATGTG
s panTro5.chrX                      336880 10 + 155549662 CTCAGATGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82060 10 -    177848 CTCAGATGTG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            243809 10 +    417917 CTCAGATGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24229 10 +     35312 CTGAGATGGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308694 10 + 180051392 CTGAGGTGGG
i rheMac8.chr6                   I 21 C 0
s macNem1.NW_012017243v1            312551 10 +  25972781 CTGAGATGGG
i macNem1.NW_012017243v1         I 1 C 0
s cerAty1.NW_012001098v1            214919 10 -   1025902 CTGAGATGGG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154670 10 -    350446 CTGAGATGCG
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  239184 10 +    465904 CTCAGGTGTG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            311147 5649 +   1230721 M
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=61761.000000
s hg38.chrX_KI270880v1_alt          172636 20 +    284869 CATTGG---------------------AGACTCTGAGATGG
s panTro5.chrX                      336890 20 + 155549662 CATCGG---------------------AGACTCTGAGATGG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82070 20 -    177848 CATCGG---------------------AGACTCTGAGATGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            243819 20 +    417917 CATTGG---------------------AGACTCTGAGATGG
i gorGor5.CYUI01015925v1         C 0 I 150
s nomLeu3.chrX_GL398042_1_random     24239 20 +     35312 CATTGG---------------------AGGCTCTGAAATGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308704 41 + 180051392 CATTGGAGACTCTGAGATGGGCATTGCAGACCCTGAGGTGG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312561 20 +  25972781 CATTGG---------------------AGACCCTGAGGTGG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214929 15 -   1025902 -ATTGG---------------------AGACTCTGAG----
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            154680 20 -    350446 ATTTGG---------------------AGACTCTGAGGTGG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316796 20 +   1230721 CATTGG---------------------AGACTCTGAGATGG
i colAng1.NW_012115411v1         M 5649 C 0
s saiBol1.JH378345                  239194 20 +    465904 CACTGC---------------------AGACTGTGAGGTAT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=16092.000000
s hg38.chrX_KI270880v1_alt          172656 4 +    284869 GCAT
s panTro5.chrX                      336910 4 + 155549662 GCAT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82090 4 -    177848 GCAT
i panPan2.chrUn_NW_014024190v1   C 0 I 42
s gorGor5.CYUI01015925v1            243989 4 +    417917 GCAT
i gorGor5.CYUI01015925v1         I 150 C 0
s nomLeu3.chrX_GL398042_1_random     24259 4 +     35312 GCAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308745 4 + 180051392 GCAT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312581 4 +  25972781 GCAT
i macNem1.NW_012017243v1         C 0 C 0
s manLeu1.NW_012108508v1            154700 4 -    350446 GCAT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316816 4 +   1230721 GCAT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239214 4 +    465904 GCAC
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            214944 0 -   1025902 C
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=22785.000000
s hg38.chrX_KI270880v1_alt          172660 13 +    284869 TGGAGATTCTGAG
s panTro5.chrX                      336914 13 + 155549662 TGGAGACTCTGAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82136 13 -    177848 TGGAGACTCTGAC
i panPan2.chrUn_NW_014024190v1   I 42 C 0
s gorGor5.CYUI01015925v1            243993 13 +    417917 TGGAGACTCTGAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24263 11 +     35312 TGGGGACTC--AG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308749 11 + 180051392 TGCAGA--CTGAA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312585 11 +  25972781 TGCAGA--CTGAA
i macNem1.NW_012017243v1         C 0 C 0
s manLeu1.NW_012108508v1            154704 13 -    350446 TGGAGACTCTGAG
i manLeu1.NW_012108508v1         C 0 I 9374
s colAng1.NW_012115411v1            316820 13 +   1230721 TGGAGACTCTGAG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239218 10 +    465904 TGGAGACTCC---
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            214944  0 -   1025902 C
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=41902.000000
s hg38.chrX_KI270880v1_alt          172673 16 +    284869 CTGTGCTTTGGAGACT
s panTro5.chrX                      336927 16 + 155549662 ATGTGCATTGGAGACT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82149 16 -    177848 GTGTGCTTTGGAGATT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244006 16 +    417917 GTGTGCTTTGGAGACT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24274 16 +     35312 ATGGGCATTGGAGACT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308760 16 + 180051392 ATGTGCTTTGGAGACC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312596 16 +  25972781 ATGTGCTTTGGAGACT
i macNem1.NW_012017243v1         C 0 T 231
s cerAty1.NW_012001098v1            214944 16 -   1025902 ATGTGATTTGGAGACT
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            316833 16 +   1230721 ATGTGATTTGGAGACT
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            154717 9374 -    350446 I
e saiBol1.JH378345                  239228  0 +    465904 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=26148.000000
s hg38.chrX_KI270880v1_alt          172689 8 +    284869 CTGAGATG
s panTro5.chrX                      336943 8 + 155549662 CTGAGATG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82165 8 -    177848 CTGAGATG
i panPan2.chrUn_NW_014024190v1   C 0 T 167
s gorGor5.CYUI01015925v1            244022 8 +    417917 CTGAGATG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24290 8 +     35312 CTGAGATG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308776 8 + 180051392 CTGAGGTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312381 8 +  25972781 CTGAAATG
i macNem1.NW_012017243v1         T 231 C 0
s cerAty1.NW_012001098v1            214960 8 -   1025902 CTGAGGTG
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            316849 8 +   1230721 CTGAGATG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239228 4 +    465904 ----GGTG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            154717 9374 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=44489.000000
s hg38.chrX_KI270880v1_alt          172697 21 +    284869 GGCACTGGAGATTCTGAGATG
s panTro5.chrX                      336951 21 + 155549662 GGCACTGGAGACTCTGACGTG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            244030 21 +    417917 GGCATTGGAGATTCTGAGATG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24298 21 +     35312 GGCACTGGAGGCTCTGAGATG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308784 21 + 180051392 GGTATTGGAGACTTAGAAATG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312389 21 +  25972781 TGCTTTGGAGACTCTGAGGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214968 21 -   1025902 GGCATTGGAGACTCTGAGATG
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            316857 19 +   1230721 TGCATTGGAGACT--GAGATG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239232 21 +    465904 TGCATTGCAGACTTTGATGTG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            154717 9374 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=-183.000000
s hg38.chrX_KI270880v1_alt          172718 1 +    284869 T
s panTro5.chrX                      336972 1 + 155549662 T
i panTro5.chrX                   C 0 I 147
s gorGor5.CYUI01015925v1            244051 1 +    417917 T
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24319 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308805 1 + 180051392 T
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312410 1 +  25972781 T
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214989 1 -   1025902 G
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164091 1 -    350446 T
i manLeu1.NW_012108508v1         I 9374 C 0
s colAng1.NW_012115411v1            316876 1 +   1230721 G
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239253 1 +    465904 T
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=65820.000000
s hg38.chrX_KI270880v1_alt          172719 22 +    284869 GCATTGGAGACTCTGAGATGGG
s panTro5.chrX                      337120 22 + 155549662 GCATTGGAGAGTGTGACGTGGG
i panTro5.chrX                   I 147 C 0
s gorGor5.CYUI01015925v1            244052 22 +    417917 GCATTGGAGACTCTGAGGTGTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24320 22 +     35312 GCATTGGAGATTCTGAGATGGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308806 22 + 180051392 GCTTTGGAGACTCTGAGATGGG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312411 20 +  25972781 GCATTGgaga--ctgagatggg
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            214990 22 -   1025902 GCATTGCAGACCCTGAGGTTGG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164092 22 -    350446 GCACTGGAGACTCTGAGATGTG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316877 22 +   1230721 GCATTGGAGGCTCTGAGATGGG
i colAng1.NW_012115411v1         C 0 I 84
s saiBol1.JH378345                  239254 22 +    465904 GCTTTGGAGACTCTGAGATGGG
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=16134.000000
s hg38.chrX_KI270880v1_alt          172741 5 +    284869 CACTG
s panTro5.chrX                      337142 5 + 155549662 CATTG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            244074 5 +    417917 CATTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24342 5 +     35312 CACTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308828 5 + 180051392 CATTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312431 5 +  25972781 cattg
i macNem1.NW_012017243v1         C 0 I 906
s cerAty1.NW_012001098v1            215012 5 -   1025902 CATTG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164114 5 -    350446 CACTG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316983 5 +   1230721 CATTG
i colAng1.NW_012115411v1         I 84 I 19
s saiBol1.JH378345                  239276 5 +    465904 CACCA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=7142.000000
s hg38.chrX_KI270880v1_alt          172746 4 +    284869 GAGA
s panTro5.chrX                      337147 4 + 155549662 GAGA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            244079 4 +    417917 GAGG
i gorGor5.CYUI01015925v1         C 0 I 586
s nomLeu3.chrX_GL398042_1_random     24347 4 +     35312 GAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            215017 4 -   1025902 CAGA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164119 4 -    350446 GAGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317007 4 +   1230721 GAGA
i colAng1.NW_012115411v1         I 19 C 0
s saiBol1.JH378345                  239281 4 +    465904 CAGA
i saiBol1.JH378345               C 0 I 2
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e rheMac8.chr6                   143308833 0 + 180051392 C
e macNem1.NW_012017243v1            312436 906 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=60569.000000
s hg38.chrX_KI270880v1_alt          172750 30 +    284869 CTAAGATGTGCATTGGAGACTCTGAGGTGT
s panTro5.chrX                      337151 30 + 155549662 CTGAGATGGGCATTGGAGACTCTGACGTGT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            244669 30 +    417917 CTGAGATGTGTTTTGGAGACTCTGAGGTGT
i gorGor5.CYUI01015925v1         I 586 C 0
s nomLeu3.chrX_GL398042_1_random     24351 30 +     35312 CTGAGATGGGCATTGGAGACTCTGAGATGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308833 15 + 180051392 ---------------GAGACTCTGAGATGG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313342 13 +  25972781 ---------------GAGA--CTGAGATGG
i macNem1.NW_012017243v1         I 906 C 0
s cerAty1.NW_012001098v1            215021 30 -   1025902 CTGAAATGTGCTTTGGAGACTCCGAGGTGT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164123 30 -    350446 CTGAGATGGACATTGCAGACCCTGAGGTGT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317011 30 +   1230721 CTCAGGTGGGCATTGGAGACTCTGAGGTGT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239287 30 +    465904 CTGAGGTGCGTTTTTGAAGCTCTGAGGTGT
i saiBol1.JH378345               I 2 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82173 167 -    177848 T

a score=106350.000000
s hg38.chrX_KI270880v1_alt          172780 29 +    284869 GCTTTGGAGACTCTGAGATGTGCTTTGGA
s panTro5.chrX                      337181 29 + 155549662 GCTTTGGAGATTCTGAGATGTGCATTGGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82006 29 -    177848 gctTTGGAGACTCTGAGATGTGCTTTGGA
i panPan2.chrUn_NW_014024190v1   T 167 C 0
s gorGor5.CYUI01015925v1            244699 29 +    417917 GCTTTGGAGACTCTGAGATGTGCTTTGGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24381 29 +     35312 GCATTGGAGACTCTGAGATGGGCACTGGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308848 29 + 180051392 GCATTGCAGACCCTGAGGTGGGCATTGCA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313355 29 +  25972781 GCATTGGAGACCCTGAGGTGGGCATTGCA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215051 29 -   1025902 GCTTTGGAGACTCTGAGGTGGGCATTGCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164153 29 -    350446 GCTTTGGAGATTCTGAGATGGGCATTGCA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317041 29 +   1230721 TCTTTGGAGACTCTGAGATGGGCATTGCA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239317 29 +    465904 GCCCTGGAAACTCCGAGATGTGCTTGTGA
i saiBol1.JH378345               C 0 T 99
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=35944.000000
s hg38.chrX_KI270880v1_alt          172809 14 +    284869 GACTCTGAGGTGTC
s panTro5.chrX                      337210 14 + 155549662 GACCCTGAGGTGTG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82035 14 -    177848 GGCTCTGAGGTGTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244728 14 +    417917 GACTCTGAGGTGTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24410 14 +     35312 GGCTCTGAGATGGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308877 14 + 180051392 GACCCTGAAATGTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313384 12 +  25972781 GA--CTGAAATGTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215080 14 -   1025902 GACCCTGAGGTGGG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164182 14 -    350446 GACCCTGAGGTGGG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317070 14 +   1230721 GACCCTGAGGTGGG
i colAng1.NW_012115411v1         C 0 T 185
e saiBol1.JH378345                  239346 99 +    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=25387.000000
s hg38.chrX_KI270880v1_alt          172823 13 +    284869 CATTGGAGAC-------------------TCT
s panTro5.chrX                      337224 13 + 155549662 CACTGCAGAC-------------------CCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82049 13 -    177848 CATTGGAGAC-------------------TCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244742 13 +    417917 CATTGGAGAC-------------------TCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24424 32 +     35312 CACTGGAGACTGAGATGGGCATTGGAGATTCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308891 13 + 180051392 CTTTGGAGAC-------------------TCT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313396 11 +  25972781 CTTtggaga---------------------ct
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215094 13 -   1025902 CATTGCAGAC-------------------CCT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164196 13 -    350446 CATTGCAGAC-------------------TCT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316899 13 +   1230721 CATTGGAGGC-------------------TCT
i colAng1.NW_012115411v1         T 185 C 0
e saiBol1.JH378345                  239346 99 +    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=90928.000000
s hg38.chrX_KI270880v1_alt          172836 28 +    284869 CAGATGTGCATTGGAGACTCTGAGATGG
s panTro5.chrX                      337237 28 + 155549662 GAGGTGTGCATTGGACACTCTGACGTGG
i panTro5.chrX                   C 0 T 292
s panPan2.chrUn_NW_014024190v1       82062 28 -    177848 CAGATGTGCATCGGAGACTCTGAGATGG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244755 28 +    417917 CAGATGTGCATTGGAGACTCTGAGATGG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24456 28 +     35312 GAGATGGGCATTGGAGACTCTGAGATGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308904 26 + 180051392 GAGGTGTGCATTGgaga--ctgagatgg
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313407 26 +  25972781 gaggtgtgcattggaga--cagagatgg
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215107 28 -   1025902 GAGGTGGGCATTGCAGACCCTGAAATGT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164209 28 -    350446 GAAATGTGTGTTGGAGACTCTGAGATGC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316912 28 +   1230721 GAGATCTGCTTTGGAGACTCTGAAATGT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239247 28 +    465904 GATGTGTGCTTTGGAGACTCTGAGATGG
i saiBol1.JH378345               T 99 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=33874.000000
s hg38.chrX_KI270880v1_alt          172864 10 +    284869 GCATTGGAGA
s panTro5.chrX                      336973 10 + 155549662 GCTTTGGAGA
i panTro5.chrX                   T 292 C 0
s panPan2.chrUn_NW_014024190v1       82090 10 -    177848 GCATTGGAGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244783 10 +    417917 GCATTGGAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24484 10 +     35312 GCACTGGAGG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308930 10 + 180051392 gcattggaga
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313433 10 +  25972781 gcattggaga
i macNem1.NW_012017243v1         C 0 I 21
s cerAty1.NW_012001098v1            215135 10 -   1025902 ACTTTGGAGA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164237 10 -    350446 GATATGGAGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316940 10 +   1230721 GCATTGGAGA
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239275 10 +    465904 GCACCACAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=1215.000000
s hg38.chrX_KI270880v1_alt          172874 1 +    284869 T
s panTro5.chrX                      336983 1 + 155549662 T
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82100 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            244793 1 +    417917 T
i gorGor5.CYUI01015925v1         C 0 I 650
s nomLeu3.chrX_GL398042_1_random     24494 1 +     35312 C
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            215145 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164247 1 -    350446 C
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316950 1 +   1230721 C
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239285 1 +    465904 C
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e rheMac8.chr6                   143308940 0 + 180051392 C
e macNem1.NW_012017243v1            313443 21 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=64204.000000
s hg38.chrX_KI270880v1_alt          172875 24 +    284869 TCTGAGCTGTGCTTTGGAGACTCT
s panTro5.chrX                      336984 24 + 155549662 TCTGAGATGTGCATTGGAGACCCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82101 24 -    177848 TCTGAGATGTGCATTGGAGACTCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            245444 24 +    417917 TCTCAGATGTGCATTGGAGACTCT
i gorGor5.CYUI01015925v1         I 650 C 0
s nomLeu3.chrX_GL398042_1_random     24495 24 +     35312 TCTGAGATGGGCACTGGAGGCTCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308940 23 + 180051392 -ctgagatgggcactgcagacCCT
i rheMac8.chr6                   C 0 C 0
s cerAty1.NW_012001098v1            215146 22 -   1025902 TCTGAGGCGTGCATTGGAGACT--
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164248 24 -    350446 TCCGAGGTGGGCATTGGAGACTCT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316951 24 +   1230721 TCTGAGATGTGCTTTGGAGACTCT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239286 24 +    465904 GCTGAGGTGCGTTTTTGAAGCTCT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macNem1.NW_012017243v1            313443 21 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=36914.000000
s hg38.chrX_KI270880v1_alt          172899 11 +    284869 GAGATGGGCAC
s panTro5.chrX                      337008 11 + 155549662 GAGGTGTGCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82125 11 -    177848 GAGATGGGCAC
i panPan2.chrUn_NW_014024190v1   C 0 T 42
s gorGor5.CYUI01015925v1            245468 11 +    417917 CAGATGGGCAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24519 11 +     35312 GAGATGGGCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308963 11 + 180051392 GAGGTGGGTAT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313464 11 +  25972781 gagatgggcat
i macNem1.NW_012017243v1         I 21 C 0
s cerAty1.NW_012001098v1            215168 11 -   1025902 GAGATGGGCAT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164272 10 -    350446 GAGATGGG-AT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316975 11 +   1230721 GAGATGGGCAT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239310 11 +    465904 GAGGTGTGCCC
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=257515.000000
s hg38.chrX_KI270880v1_alt          172910 85 +    284869 TGGAGACTCTGAGATGTGCATTGGAGACTCTGAGATGGGCACTGGAGACTCTGACGTGTGCTTTGGAGACT------CTGAGATGGGCATT
s panTro5.chrX                      337019 85 + 155549662 TGCAGACCCTGAGGTGTGCATTGGACACTCTGACGTGGGCACTGGAGAGTCTGACGTGTGCTTTGGAGACT------CTGAGATGGGCATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       82094 85 -    177848 TGGAGACTCTGAGATGTGCATTGGAGACTCTGAGATGGGCACTGGAGACTCTGACGTGTGCTTTGGAGATT------CTGAGATGTGCATT
i panPan2.chrUn_NW_014024190v1   T 42 I 5405
s gorGor5.CYUI01015925v1            245479 85 +    417917 TGGAGATTCTGAGATGTGCTTTGGAGACTCTGAGATAGGCACTGGAGACTCTGAGATGTGCATTGGAGACT------CTGAGGTGGGCACT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24530 81 +     35312 TGGAGA--CTGAGATGGGCATTGGAGATTCTGAGATGGGCACTGGAGGCTCTGAGATGGGCATTGGAGA--------CTGCGATGGGCATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143308974 91 + 180051392 TGCAGACTCTGAAATGTGCTTTGGAGACTCTGAGGTGTGCATTGGAGACTCTGAGATGTGATTTGGAGACTCTGAGACTGAGATGGGCATT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313475 83 +  25972781 tggaga--cagagatgggcattggagGCCCTGAGGTGGACATTGCAGACTCTGAGATGTGCTTTGGAGACT------CTGAGGTGTGCATT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215179 77 -   1025902 TGGAGA--CTGAGATGGGCATTGGAGA--CTGAGATGGGCATTGGAGA--CTGAGGTGGGCATTGGAGA--------CTGAGATGGGCATT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164282 83 -    350446 TGGAGACTCTGAGATGTGATTTGGAGACTCTGACGTGGGCATTGGAGACTCTGAGGTGCGCATTGCACT--------CTGAAATGTGTGTT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316986 81 +   1230721 TGGAGA--CTGAGATGGGTCTTGGAGA--CTCAGGTGGGCATTGGAGACTCTGAGGTGTTCTTTGGAGACT------CTGAGATGGGCATT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239321 84 +    465904 TGGAAACTCCGAGATGTGC-TTGTGAACTGTGAGATGTGCATTGCAGACTCTGAGGTCGGCTTTGGCAGCT------GTGTGATGGGCACT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=76523.000000
s hg38.chrX_KI270880v1_alt          172995 28 +    284869 GGAGACCCTGAGGTGTGCATTGGAGACT
s panTro5.chrX                      337104 28 + 155549662 GGAGACCCTGAGGTGTGCATTGGAGAGT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            245564 28 +    417917 GGAGACTCTGACGTGTGCTTTGGAGACT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24611 28 +     35312 GGAGACTCTGAGATGGGCACTGGAGACT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309065 28 + 180051392 GGAGACCCTGAGGTGGGCATTGCAGACT
i rheMac8.chr6                   C 0 I 55
s macNem1.NW_012017243v1            313558 28 +  25972781 GGAGACTCTGAGGTGGGCATTGCAGACC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215256 28 -   1025902 GGAGACCCTGAGGTGGACATTGCAGACC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164365 28 -    350446 GGAGACTCTGAGGTGTGCATTGGAGACT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317067 28 +   1230721 GCAGACCCTGAGGTGGGCTTTAGAGACT
i colAng1.NW_012115411v1         C 0 I 60
s saiBol1.JH378345                  239405 28 +    465904 GCATGAGCTGAGGTTTTCATTGGACCCT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=6964.000000
s hg38.chrX_KI270880v1_alt          173023 3 +    284869 CTG
s panTro5.chrX                      337132 3 + 155549662 GTG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            245592 3 +    417917 CTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24639 3 +     35312 CTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309148 3 + 180051392 cag
i rheMac8.chr6                   I 55 C 0
s macNem1.NW_012017243v1            313586 3 +  25972781 CTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215284 3 -   1025902 CTG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164393 3 -    350446 CTG
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  239433 3 +    465904 CTG
i saiBol1.JH378345               C 0 T 371
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            317095 60 +   1230721 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=22092.000000
s hg38.chrX_KI270880v1_alt          173026 9 +    284869 ACGTGGGCA
s panTro5.chrX                      337135 9 + 155549662 ACGTGGGCA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            245595 9 +    417917 AGATGGGCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24642 9 +     35312 AGATGGGGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309151 9 + 180051392 agatgggca
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313589 9 +  25972781 AGGTGGGCA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215287 9 -   1025902 AGGTGGGCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164396 9 -    350446 AGATGGGCA
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  239065 9 +    465904 AGGTGTGCA
i saiBol1.JH378345               T 371 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            317095 60 +   1230721 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=23212.000000
s hg38.chrX_KI270880v1_alt          173035 7 +    284869 TTGGAGA
s panTro5.chrX                      337144 7 + 155549662 TTGGAGA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            245604 7 +    417917 TTGGAGA
i gorGor5.CYUI01015925v1         C 0 I 356
s nomLeu3.chrX_GL398042_1_random     24651 7 +     35312 CTGGAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309160 7 + 180051392 ttggaga
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313598 7 +  25972781 TTGCAGA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215296 7 -   1025902 TTGCAGA
i cerAty1.NW_012001098v1         C 0 I 2
s manLeu1.NW_012108508v1            164405 7 -    350446 TTGCAGA
i manLeu1.NW_012108508v1         C 0 I 2
s colAng1.NW_012115411v1            317155 7 +   1230721 TTGGAGA
i colAng1.NW_012115411v1         I 60 C 0
s saiBol1.JH378345                  239074 7 +    465904 CTGGAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=74019.000000
s hg38.chrX_KI270880v1_alt          173042 32 +    284869 CTGAGATGGGCATTGGAGACTCTGAGATGTGC
s panTro5.chrX                      337151 32 + 155549662 CTGAGATGGGCATTGGAGACTCTGACGTGTGC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24658 32 +     35312 CTGAGATGGGCATTGGAGACTCTGAGATGGGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309167 32 + 180051392 cagagatgggcattggagGCCCTGAGGTGGAC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            313605 32 +  25972781 CTGAAATGTGCTTTGGAGACTGTGAGATGTGC
i macNem1.NW_012017243v1         C 0 T 1165
s cerAty1.NW_012001098v1            215305 30 -   1025902 CTGAGGTGGGCATTGCAGAC--TGAAATGTGC
i cerAty1.NW_012001098v1         I 2 C 0
s manLeu1.NW_012108508v1            164414 32 -    350446 CTGAGGTTGGCATTGCATACTCTGAAATGTGC
i manLeu1.NW_012108508v1         I 2 C 0
s colAng1.NW_012115411v1            317162 32 +   1230721 CTGAGATGGGCATTGGAGACTGTGAGATGTGC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239081 32 +    465904 CTGAGGTGTGCATTGGAAACTCTGAGGTGTGC
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=4572.000000
s hg38.chrX_KI270880v1_alt          173074 3 +    284869 TTT
s panTro5.chrX                      337183 3 + 155549662 TTT
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24690 3 +     35312 ATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309199 3 + 180051392 ATT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312472 3 +  25972781 ATT
i macNem1.NW_012017243v1         T 1165 C 0
s cerAty1.NW_012001098v1            215335 3 -   1025902 TTT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164446 3 -    350446 TTT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317194 3 +   1230721 TTT
i colAng1.NW_012115411v1         C 0 T 267
s saiBol1.JH378345                  239113 3 +    465904 ACT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=40562.000000
s hg38.chrX_KI270880v1_alt          173077 21 +    284869 GGAGATTCCGATATGTGCATT
s panTro5.chrX                      337186 21 + 155549662 GGAGATTCTGAGATGTGCATT
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24693 21 +     35312 GGAGACTCTGAGATGGGCACT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309202 21 + 180051392 GCAGACTCTGAGATGTGCTTT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312475 21 +  25972781 GCAGACTCTGAAATGTGCTTT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215338 21 -   1025902 GGAGACTCTGAGGTGTGCATT
i cerAty1.NW_012001098v1         C 0 T 98
s manLeu1.NW_012108508v1            164449 21 -    350446 GGAGACTCTGAGGTGTGCATT
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  239116 21 +    465904 GGAGACTCTGACATGTGCACT
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            317197 267 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=10122.000000
s hg38.chrX_KI270880v1_alt          173098 5 +    284869 GGAGA
s panTro5.chrX                      337207 5 + 155549662 GGAGA
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24714 5 +     35312 GGAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309223 5 + 180051392 GGAGA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312496 5 +  25972781 GGAGA
i macNem1.NW_012017243v1         C 0 C 0
s manLeu1.NW_012108508v1            164470 5 -    350446 GGAGA
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  239137 5 +    465904 GGAGA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            215359 98 -   1025902 T
e colAng1.NW_012115411v1            317197 267 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=2100.000000
s hg38.chrX_KI270880v1_alt          173103 1 +    284869 C
s panTro5.chrX                      337212 1 + 155549662 C
i panTro5.chrX                   C 0 C 0
s rheMac8.chr6                   143309228 1 + 180051392 C
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312501 1 +  25972781 C
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215261 1 -   1025902 C
i cerAty1.NW_012001098v1         T 98 C 0
s manLeu1.NW_012108508v1            164475 1 -    350446 C
i manLeu1.NW_012108508v1         C 0 T 187
s saiBol1.JH378345                  239142 1 +    465904 C
i saiBol1.JH378345               C 0 C 0
e nomLeu3.chrX_GL398042_1_random     24719 0 +     35312 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            317197 267 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=745.000000
s hg38.chrX_KI270880v1_alt          173104 1 +    284869 C
s panTro5.chrX                      337213 1 + 155549662 C
i panTro5.chrX                   C 0 C 0
s rheMac8.chr6                   143309229 1 + 180051392 T
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312502 1 +  25972781 T
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215262 1 -   1025902 C
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164289 1 -    350446 T
i manLeu1.NW_012108508v1         T 187 C 0
s colAng1.NW_012115411v1            316930 1 +   1230721 T
i colAng1.NW_012115411v1         T 267 C 0
s saiBol1.JH378345                  239143 1 +    465904 T
i saiBol1.JH378345               C 0 I 202
e nomLeu3.chrX_GL398042_1_random     24719 0 +     35312 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=87894.000000
s hg38.chrX_KI270880v1_alt          173105 46 +    284869 CTGAGGTGTGCACTGCAGACACTGAGGTGTGCATTGGACACTCTGA
s panTro5.chrX                      337214 46 + 155549662 CTGAGGTGTGCACTGCAGACCCTGAGGTGTGCATTGGACACTCTGA
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24719 46 +     35312 CTGAGATGGGCATTGGAGACTCTGAGATGGGCACTGGAGACTCTGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309230 46 + 180051392 CTGAGGTGTGCATTGGAGACTCTGAGGTGGGCATTGCAGACCCTGA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            312503 46 +  25972781 CTGAGGTGTGCATTGGAGACTCTGAGATGTGATTTGGAGACTCTGA
i macNem1.NW_012017243v1         C 0 I 1945
s cerAty1.NW_012001098v1            215263 46 -   1025902 CTGAGGTGGACATTGCAGACCCTGAGGTGGGCATTGCAGACCCTGA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164290 46 -    350446 CTGAGATGTGATTTGGAGACTCTGACGTGGGCATTGGAGACTCTGA
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            316931 46 +   1230721 CTGAAATGTGCATTGGAGACTCTGAGATGTGCTTTGGAGACTCTGA
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  239144 202 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=33760.000000
s hg38.chrX_KI270880v1_alt          173151 29 +    284869 CGTGGGCACTGGAGACTGAGATGGGTACG
s panTro5.chrX                      337260 29 + 155549662 CGTGGGCACTGGAGACTGAGATGGGTACG
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24765 29 +     35312 GATGGGCACTGGAGACTGAGATGGGCATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309276 29 + 180051392 GGTGGGCATTGCAGATTGAAATGTGCTTT
i rheMac8.chr6                   C 0 C 0
s cerAty1.NW_012001098v1            215309 29 -   1025902 GGTGGGCATTGCAGACTGAAATGTGCTTT
i cerAty1.NW_012001098v1         C 0 I 21
s manLeu1.NW_012108508v1            164336 29 -    350446 GGTGCGCATTGCACTCTGAAATGTGTGTT
i manLeu1.NW_012108508v1         C 0 I 264
s colAng1.NW_012115411v1            316977 29 +   1230721 GATGGGCATTGGAGACTGAGATGGGTCTT
i colAng1.NW_012115411v1         C 0 I 191
e saiBol1.JH378345                  239144 202 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macNem1.NW_012017243v1            312549 1945 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=10948.000000
s hg38.chrX_KI270880v1_alt          173180 4 +    284869 GGAG
s panTro5.chrX                      337289 4 + 155549662 GGAG
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24794 4 +     35312 GGAG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309305 4 + 180051392 GGAG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314494 4 +  25972781 GGAG
i macNem1.NW_012017243v1         I 1945 C 0
s cerAty1.NW_012001098v1            215359 4 -   1025902 GGAG
i cerAty1.NW_012001098v1         I 21 C 0
s manLeu1.NW_012108508v1            164629 4 -    350446 GGAG
i manLeu1.NW_012108508v1         I 264 C 0
s colAng1.NW_012115411v1            317197 4 +   1230721 GGAG
i colAng1.NW_012115411v1         I 191 C 0
e saiBol1.JH378345                  239144 202 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=39008.000000
s hg38.chrX_KI270880v1_alt          173184 14 +    284869 ACTCTGAGGTGTGC
s panTro5.chrX                      337293 14 + 155549662 ACTCTGAGGTGTGC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     24798 14 +     35312 ATTCTGAGATGGGC
i nomLeu3.chrX_GL398042_1_random C 0 I 335
s rheMac8.chr6                   143309309 14 + 180051392 ACTGTGAGATGTGC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314498 14 +  25972781 ACTGTGAGATGTGC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215363 14 -   1025902 ACTCTGAGGTGTGC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164633 14 -    350446 ACTCTGAGGTGTGC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317201 14 +   1230721 ACTCTGAGATGTGC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239346 14 +    465904 ACTGTGAGATGTGC
i saiBol1.JH378345               I 202 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=48895.000000
s hg38.chrX_KI270880v1_alt          173198 17 +    284869 ATTGCAGACTCTGAGGT
s panTro5.chrX                      337307 17 + 155549662 ATTGCAGACTCTGAAGT
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25147 17 +     35312 ATTGCCGACTCTGAGGG
i nomLeu3.chrX_GL398042_1_random I 335 C 0
s rheMac8.chr6                   143309323 17 + 180051392 GTCGCAGACTCTGAGGT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314512 17 +  25972781 GTCGCAGACTCTGAGGT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215377 17 -   1025902 ATCGCAGACTCTGAGGT
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164647 17 -    350446 ATCGCAGACTCTGAGGT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317215 17 +   1230721 ATTGCAGACCCTGAGGT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239360 17 +    465904 ATTGCAGACTCTGAGGT
i saiBol1.JH378345               C 0 I 3
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=6713.000000
s hg38.chrX_KI270880v1_alt          173215 3 +    284869 GTG
s panTro5.chrX                      337324 3 + 155549662 GTG
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25164 3 +     35312 GTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309340 3 + 180051392 GTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314529 3 +  25972781 GTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215394 3 -   1025902 GTG
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            164664 3 -    350446 GTG
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            317232 3 +   1230721 GGG
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  239377 3 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=365724.000000
s hg38.chrX_KI270880v1_alt          173218 136 +    284869 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTTGGACACTCTGGTGTTCCAG--TATGATGTGATTGC-TTTTCAGAGCGGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
s panTro5.chrX                      337327 136 + 155549662 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTTGGACACTCTGGTGTTCCAG--TATGTTGTGATTGC-TTTTCAGAGCGGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25167 123 +     35312 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTTGGACACTCTGGTGTTCCAG--TATGATGGGATTTTGCTTTCAGAGAGGCAGACAGGGTGT--------------CCGGCAGCAGGACGCTGAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309343 138 + 180051392 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTGGGACACTCTGGAGTTCCAGTATATGATGTGACTGC-TTTTCAGAGCGGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
i rheMac8.chr6                   C 0 I 2
s macNem1.NW_012017243v1            314532 138 +  25972781 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTGGGACACTCTGGAGTTCCAGTATATGATGTGACTGC-TTTTCAGAGCGGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
i macNem1.NW_012017243v1         C 0 I 2
s cerAty1.NW_012001098v1            215397 137 -   1025902 CTTTGGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTGGGACACTCTGGAGTTCCAGTATATGATATGATTGC-TTTTCA-AGCTGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
i cerAty1.NW_012001098v1         C 0 I 2
s manLeu1.NW_012108508v1            164667 138 -    350446 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTGGGACACTCTGGAGTTCCAGTATACGATATGATTGC-TTTTCAGAGCTGCAGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGACGCTGAC
i manLeu1.NW_012108508v1         C 0 I 2
s colAng1.NW_012115411v1            317235 136 +   1230721 CTTTAGAGACTGTGAGATGGGCACTGCAGAGGCTGAGGTGTGCTTCGGACGCTCCGGTGTTCC--TGTATGATGTGACTGC-TTTTCAGAGCAGCCGACAGGATGTCCAGCTGGAGCCGGCCAGCAGCAGGGCGCTGAC
i colAng1.NW_012115411v1         C 0 I 2
s saiBol1.JH378345                  239380 136 +    465904 CTTTGGCAGCTGTGTGATGGGCACTGCATGAGCTGAGGTTTTCATTGGACCCTCTGGAGTTCCAC--TAGGCTGTGGCTGC-TCCTCAGAGCTGCAGGCGGGTTGTCCAGCTGGAGCCGGCCAGCAGCAGGATGCTGTC
i saiBol1.JH378345               I 3 I 2
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            245611 356 +    417917 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=367468.000000
s hg38.chrX_KI270880v1_alt          173354 100 +    284869 TG--CGTGAGTGATGCAGCCGCGATTGGTGTTGACGGCCGGCGCGGAACACTCCATCTACATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
s panTro5.chrX                      337463 102 + 155549662 TGTGCGTGAGTGACGCAGCCGCGATTGGTGTTGACGGCCGGCGCGGAACACTCCATCTACATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            245967 100 +    417917 --TGCGTGAGTGACGCAGCCGCGATCGGTGTTGACGGCCGGCGCGGAACACTCCATCTACATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i gorGor5.CYUI01015925v1         I 356 C 0
s nomLeu3.chrX_GL398042_1_random     25290 102 +     35312 TGTGCGTGAGTGACGCAGCCACGATTGGTGTTGACGGCCATCGCGGAACGGTCCATCTACATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309483  99 + 180051392 --TGCATGAGTGACGCGGCCGTGATTGGTGTAGACGGCCAGCGCGGA-CGCTCCATCTGCATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i rheMac8.chr6                   I 2 C 0
s macNem1.NW_012017243v1            314672  99 +  25972781 --TGCATGAGTGACGCGGCCGTGATTGGTGTAGACGGCCAGCGCGGA-CGCTCCATCTGCATTCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i macNem1.NW_012017243v1         I 2 C 0
s cerAty1.NW_012001098v1            215536  99 -   1025902 --TGCGTGACTGACGTGGCCGTGATTGGTGTAGACGGCCAGCGCGGA-CGCTCCATCTGCATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i cerAty1.NW_012001098v1         I 2 C 0
s manLeu1.NW_012108508v1            164807  99 -    350446 --TGCGTGAGTGACGCGGCCGTGATTGGTGTAGACGGCCAGCGCGGA-CGCTCCATCTGCATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i manLeu1.NW_012108508v1         I 2 M 1783
s colAng1.NW_012115411v1            317373 100 +   1230721 --TGCGTGAGTGACGCGGCCGTGATTGGTGTAGACGGCCAGCACGGAGCGCTCCGTCTGCATGCAGGTGCTAAGTGAGCCCTGGGGAGAAGATGACCTGAAT
i colAng1.NW_012115411v1         I 2 C 0
s saiBol1.JH378345                  239518  99 +    465904 --TGCGTGAGTGAAGCAGCCATGATTGGTGCTGACGGCCACCGCGGA-CGCTCCATCTGCATGCAGGTGGTAAGTGAGCCCTGGGGAGAAGGTGACCTGAAT
i saiBol1.JH378345               I 2 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=147628.000000
s hg38.chrX_KI270880v1_alt          173454 75 +    284869 ACTTGCCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCAATGTT-------AAAAAAAAAAA------AC-------------AAAA
s panTro5.chrX                      337565 69 + 155549662 ACTTGCCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCAATGTT-------AAAAAAAAAAA-------------------------
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246067 88 +    417917 ACTTGCCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATACGATTTAGGCAATGTT-------aaaaacaaaaa------acaaaaaacaaaaataaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25392 81 +     35312 GCTTCTCAACTGTTCTTTAGAAATGTCTTTAAATGGAAAATATGATTTAGGTAATGTT-------aaaaaaaaaaa------aacaaaca-------aaaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309582 64 + 180051392 GCTCGTCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCAATT------------AAAACAAA-------------------------
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314771 69 +  25972781 GCTCGTCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCAATTAA-------AAAAAAAAAAA-------------------------
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215635 75 -   1025902 GCTCGTCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCaataaa-------aaaaaaaaaaaaaaaaa-------------------
i cerAty1.NW_012001098v1         C 0 I 180
s colAng1.NW_012115411v1            317473 69 +   1230721 TCTCGTCAACTGTTCTTTAGAAATTTCTTTAAATGGAAAATATGATTTAGGCaaaaaa-------aaaaaaaaaaa-------------------------
i colAng1.NW_012115411v1         C 0 I 2
s saiBol1.JH378345                  239617 82 +    465904 GCTCGTCAAGTGCTCTTTAGAAACGTCTTTAAATGCAGAATATAATTCAAGCAATGTTTTTTTAAAAAAAGACAAA------ATCAAA-------------
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=142364.000000
s hg38.chrX_KI270880v1_alt          173529 84 +    284869 CCAGACAGAGTCCCAGGATATTAGCACATGGCTCAGAAGACCGGACGCAGAAGGAGGAAAAGTC--ATGCTCTTTGCCAAGCCCAG
s panTro5.chrX                      337634 84 + 155549662 CCAGACAGAGTCCCAGGATATTAGCGCATGGCTCAGAAGACTGGACGCAGAAGGAGGAAAAGAC--ATGCTCTTTGCCAAGCCCAA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246155 84 +    417917 CCAGACAGAGTCCCAGGATATTAGCACATGGCCCAGAAGACCGGACGCAGAAGGAGGAAAAGGC--ATGCTCTTTGCCAAGCCCAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25473 86 +     35312 GCAGACAGAGTCCCAGGGTATTAGCACACGGCTCAGAAGGCCGGATGCAGAAGGAGGAAAAGCCTTTTGCTCTTTGCCAAGCCAAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309646 84 + 180051392 --AAACAGAGTCCCAGGATATTAGCACACAGGTGAGAAGACGGGAGGCAGGAGGAGGAGAAAACCTCTGCTCTTTGGCAAACCGAA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314840 84 +  25972781 --AAACAGAGTCCCAGGATATTAGCACACAGGTGAGAAGACGGGAGGCAGGAGGAGGAGAAAACCTATGCTCTTTGGCAAACCGAA
i macNem1.NW_012017243v1         C 0 C 0
s colAng1.NW_012115411v1            317544 82 +   1230721 --aaaaaGAGTCCCAGGATATTAGCACACGGGTGAGAAGACGGGAGGAAGGAGGAGGAGAAAGCC--TGCTCTTTGCCAGACCGAA
i colAng1.NW_012115411v1         I 2 C 0
s saiBol1.JH378345                  239699 83 +    465904 -CAGACAGAATCCCAGGGCATTAGCACATGGCTCGGAAGAAGGGAAGCAGGTAGAGAAAATAGC--GTGGTCTTCGCCATGGCAGA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e cerAty1.NW_012001098v1            215710 180 -   1025902 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=64566.000000
s hg38.chrX_KI270880v1_alt          173613 22 +    284869 TGCTAACTAGACCTTAAACCTG
s panTro5.chrX                      337718 22 + 155549662 TGCTAACTAGACCTTAAACCTG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246239 22 +    417917 TGCTAACTAGACCTTAAACCTG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25559 22 +     35312 TGCTAACTAGACCTTAAACCTG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309730 22 + 180051392 TGCTGACTAGACCTTAAACCTG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314924 22 +  25972781 TGCTGACTAGACCTTAAACCTG
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            215890 22 -   1025902 TGCTGACTAGACCTTCAACCTG
i cerAty1.NW_012001098v1         I 180 C 0
s colAng1.NW_012115411v1            317626 22 +   1230721 TGCTAGCTACACCTTAAACCGG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  239782 22 +    465904 TGCTAACTAGGCCTTCAACCTG
i saiBol1.JH378345               C 0 I 3784
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=153183.000000
s hg38.chrX_KI270880v1_alt          173635 72 +    284869 GGCGAATGCACCCATAACGTGGGTGTCTCCACGCCTTCCGTGC---AAACTGTGTGTATTTGACAGATGAATGGT
s panTro5.chrX                      337740 72 + 155549662 GGCGAATGCACCCATAACGTGGGTGTCTCCACGCCTTCCGTGC---AAGCTGTGTGTATTTGACACATGAATGGT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246261 72 +    417917 GGCAAATGCACCCATAACGTGGGTGTCTCCATGCCTTCCGTGC---AAGCTGTGTGTGTTTGACACATGAACCGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25581 75 +     35312 GGCAAATGCACCCATAACGTGGGTGTCTCAACTCCTTCCGTGCAAAAAGGTGCGTGTATTTGACACTTCAACAGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309752 72 + 180051392 GGCGAATGCACCCATAACGTGGGCGTCTTCACTGCTTCCGTGC---AAGGTGTGTGCATTTGACACACGAATGGT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            314946 72 +  25972781 GGCGAATGCACCCATAACGTGGGCGTCTTCACTGCTTCCGTGC---AAGGTGTGTGCATTTGACACACGAATGGT
i macNem1.NW_012017243v1         C 0 I 349
s cerAty1.NW_012001098v1            215912 72 -   1025902 GGCGAATGCACCCACAACGTGGGCGTCTTCACTGCTTCCGTGC---AAGGTGCGTGCATTTGACACACGAATGGT
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            317648 72 +   1230721 GGCGAATGCACCCATAACGTGGGCGTCTTCACTGCTTCTGTGC---AAGGTGTGTGCATTTGACACACGAATGGC
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=163327.000000
s hg38.chrX_KI270880v1_alt          173707 119 +    284869 TTGTCTCTGGGATGATACTTTTCTGACAGTGCAGCCTGCAGATAACATCTAACGAGGGGAGAAGGATTATGTGAGCAGTGGTGGCTGAGGtctctctctctctctctctcttttttttt--------
s panTro5.chrX                      337812 108 + 155549662 TTGTCTTTGGGATGATATTTTTCTGACAGTGCAGCCTGCAGATAACATCTAACGAGGGGAGAAGGATTATGTGAGCAATGGCGGCTGAGGtctctctctctctct-----------ttt--------
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246333 115 +    417917 TTGTCTTTGGGATGATATTTTTCTGACAGTGCAGCCTGCAGGTAACATCTAACGACGGGAGAAGGATTATGTG-GTAGTGGCGGCTGAGGTCTCTCtttctctctctcttctt---ttt--------
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25656 101 +     35312 TTGTCTTCGGGACGATATTTTTCTGACAGTGCAGCCTACAGATAACATCTAACGAGGGGTGAAGGATTATGTG-------GTGGCTGAGGtttctctgtctctct-----------ttt--------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143309824 119 + 180051392 GTGTCTCTGGGATGGTATTTTTCTGACAATGCAACCTGCAGATAACATCTAACGAGGGGTGAAGGATTATGTGTGCAGTGGGGGCCGAGGtctccctctctctctctc--------tctTTTTTTTT
i rheMac8.chr6                   C 0 I 649
s cerAty1.NW_012001098v1            215984 111 -   1025902 TTGTCTTTGGGATGGTATTTTTCTGACAATGCAACCTGCAGATAACATCTAACGAGGGGTGAAGGAGTATGTGTGCAGTGGGGGCCGAGGTCTCTCTCTCtctctctc--------ttt--------
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            317720 115 +   1230721 TTGTCTTTGGGATGGTATTTTTCTGACAATGCAACCTGCAGATAACGTCTAACGAGGGGTGAAGGATTATGTGTGCACTGGTGGCCGAGGTCTCTCTCTCTCTCTCtt--------ttttatt----
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=145157.000000
s hg38.chrX_KI270880v1_alt          173826 121 +    284869 tt---ttttttgagatggagtttcactcttgttgtccaagctggag-ttcactggcgtgatctcggctcacagcaacctctgcctcccgggttcaagcgattctcttgcctcagcctcccaagta
s panTro5.chrX                      337920 121 + 155549662 tt---ttttttgagatggagtttcactcttgttgtccaagctggag-ttcactggcgcgatctcagctcacagcaacctctgcttcccgggttcaagagattctcttgcctcagcctcccaagta
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246448 121 +    417917 tt---ttttttgagatggagtttcactcttgttgcccaggctggag-tgcagtggcgcgatctcggctcacggcaacctctgcctcccgggttcaagcgattctcttgcctcagcctcccaagta
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25757 124 +     35312 ttatattttttgagatggagtttcactcttgttgtccaagctgcag-tgcaatggcgcgatctcagctcaccgcaacctctgcctcccgggttcaagcgattctcttgcctcagcctcccaagta
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            216095 122 -   1025902 tt---ttttttgagatggagtttcactctcgttgcccaggctggagttgcagtggcgcgatgtcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagta
i cerAty1.NW_012001098v1         C 0 C 0
s colAng1.NW_012115411v1            317835 121 +   1230721 tt---ttttttgagatggaatttcactcttgttgcccaggttggag-tgcaggggcgcgatctcggttccctgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcccgagta
i colAng1.NW_012115411v1         C 0 I 1066
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e rheMac8.chr6                   143309943 649 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=37525.000000
s hg38.chrX_KI270880v1_alt          173947 65 +    284869 gctgggattacaagcatgtgccaccatgcccaactaattt-tgtat-tttgtatttttctttctttc
s panTro5.chrX                      338041 64 + 155549662 gctgggattacaagcatgtgccaccatgcccaactaattt-tgtat-tttgtatttttctttctta-
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246569 64 +    417917 gctgggattacaagcatgtgccaccatgcccaactaattt-tgtat-tttgtattttttttttttt-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25881 60 +     35312 gctgggattacaggcatgcaccaccatgcctgactaattt-tgtat-tttgtattttttttt-----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            216217 61 -   1025902 gctgggatgacaggcgtgtgccaccattcctgactaatttgtgtgtgtgtgtgtgtgtgta------
i cerAty1.NW_012001098v1         C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          161957 7216 -    811265 I
e colAng1.NW_012115411v1            317956 1066 +   1230721 I
e rheMac8.chr6                   143309943 649 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=-3548.000000
s hg38.chrX_KI270880v1_alt          174012 8 +    284869 tttctttt----
s panTro5.chrX                      338105 3 + 155549662 -----ttt----
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246633 3 +    417917 -----ttt----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25941 3 +     35312 -----ttt----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            216278 7 -   1025902 -----tatatat
i cerAty1.NW_012001098v1         C 0 I 1
s chlSab2.chrUn_KE147541v1          169173 8 -    811265 ----tttttttt
i chlSab2.chrUn_KE147541v1       I 7216 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            317956 1066 +   1230721 I
e rheMac8.chr6                   143309943 649 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=502670.000000
s hg38.chrX_KI270880v1_alt          174020 308 +    284869 ttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctaactgcaacctctgcctcccgggttcacaccattctcctgcctcagcctcccgagtcgctgggactacaggtacccgccactgcacccggctaattttttgtatttttagaag-agacggggtttcaccgtgttagccaggatggtct--cgatctcctgacctcgtgatccgcccgcctcggcctctcagagtgctgggactacaggcgtgagccaccgtgcccgactttttttttttttttttttttt
s panTro5.chrX                      338108 308 + 155549662 ttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggtacccgccactgcacccggctaattttttgtatttttagaag-agacagggtttcaccgtgttagccaggatggtct--cgatctcctgacctcatgatccacccgcctcggcctctcagagtgctgggactacaggcgtgagccaccgtgcccgactttttttttttttttttttttt
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246636 310 +    417917 ttttttgagacggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaacctctgcctcccgggttcacaccattctcctacctcagcctcccgagtagctgggactacaggtgcccgccactgcgcccggctaattttttgtatttttagaagaagatggggtttcactgtgttagccaggatggtctcccgatctcctgacctcatgatccg-ccgcctcggcctctcagagtgctgggattacaagcgtgagccaccgtgcccgactttttttttttttttttttttt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     25944 308 +     35312 ttttttgagacggagtctcgctctgtcacccaggctggagtgcagtggcgtaatctcggctcactacaacgtccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactacagacacccgccaccacgcccggctaattttttgtatttttagtag-agacggggtttcaccgtgttagccaggatggtct--cgatctcctgacctcatgatccgcccacctcagcctctcagagtgctgggattacaggtgtgagccaccacgcctgactttttttttttttttttttttt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143310592 305 + 180051392 ttttttgagatagagcgtcactctgtcgcccaggctggagtgcagtggtgtgatatcagctcactgcaacctccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactactggcacctgccacctcgcctggctaattttttgtatttttagtag-agacggggtttcaccatgttggccaagatggtct--cgatctcctcacttcgtgatccacctgcctcagcctcccaaagtgctgggatgacaggcctgagccaccgagcctggcTTTTTTTGTTTGTTGTTTG---
i rheMac8.chr6                   I 649 C 0
s cerAty1.NW_012001098v1            216286 305 -   1025902 ttttttgagatagagtctcactctgtcgcccaggctggagtgcagtggtgtgatatcagctcactgcaagctctgcctcccgggttcatgccattctcgtgcctcagcctcccgagtagctgggactacaggcacccggcaccacgcccggctaattttttgtatttttagtag-aggcggggtttcaccgtgttggccaggctgctct--cgatctcctgacctcgtgatccacctgcttcagctgtccaaagtcctgggattacaggcgtgaaccaccacgcctggctttttttgtttgttgtttg---
i cerAty1.NW_012001098v1         I 1 C 0
s chlSab2.chrUn_KE147541v1          169181 308 -    811265 tttttttagacagagtctaactctgtcccccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgcccggctaattttttgtatttttagtag-agacggggtttcaccgtgttggccaggatggtct--cgatctcctgacctcgtgatccacctgcctcagtcgcccaaagtgctgggatgacaggcgtgagccaccacgcctggcTTTTTTTGTTTGTTGTTTGttt
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            164906 1783 -    350446 M
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            317956 1066 +   1230721 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=465018.000000
s hg38.chrX_KI270880v1_alt          174328 227 +    284869 tttt-------agtaaagacagggtttctccatattggccaggctggtcttgaactcttgacctcaggtgatgcacctgccttggcctcccaaagtgctgggattacaagcgt---gagtcactgcgcccggccCGAGGTGTCTTATGAGTGGGCAGTGGACTGTGGCTCAGCTCTGGCCCACCTG-AAGGTGAAGAGAGGTGGC-TTTCTGGCCCTGGGATTAGTCCTGCCTTGTACA
s panTro5.chrX                      338416 230 + 155549662 tttt----tttagtaaagacagggtttctccatattggccaggctggtcttgaactcttgacctcaggtgatgcacctgcctcggcctcccaaagtgctgggattacaagctt---gagtcaccgcgcctggccCGAGGTGTCTTATGAGCAGGCAGTGGCCTGTGGCTCGGCTCTGGCCCACCTG-AAGGTGAAGAGAGGCGGC-TTTACAGCCCTGGGATTAGTCCTGCCTTGTACA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            246946 229 +    417917 tttttttttttagtgaagacagggtttcttcatattggccaggctggtcttgaactcttgacctcaggtgatgcacctgcctcggcctcccaaagtgctgggattacaagtg----gagtcaccgcacct-gtccGAGGTGTCTTATGAGCGGGCAGTGGCCTGTGGCTCA-CTCTGGCCCACCCG-AAGGTGAAGA-AGGTGGC--TTCCAGCCCTGGGATTAGTCCTGCCTTGTACA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26252 225 +     35312 tt---------agtaaagacggggtttctccatattggtcaggctggtgttgaactcttgacctcaggtgatccacctgcctcggcctcccaaagtgccgggattacaagcgt---gagccaccgcacccggccCGAGGTCTCTTATGAGCGGGCAGTGGCCTGTGGCTCAGCCCTGGCCCTCCTG-AAGGTGAAGAGAGGTGGC-TTTCCAGCCCTGAGATCTGTCCTGCCTTGCACA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143310897 232 + 180051392 -------ttttagtaaagacagggtttgtccatattgcccaggctggtcttgaactctggacctcaggtgatccacctgcctcggccgcccaaagtgctgggattacaagcgtgaagagccaccgcacctggccCGAGGTCTCTTCTGAGCGGGCAGAGTCCTGTGGCTCGGCCCTGGCCCGCCTGAAAGGTGAAGATAGACGGCTTTTCCAGCCCTGGGATCGGTGCTGTCTTGCACA
i rheMac8.chr6                   C 0 I 35
s cerAty1.NW_012001098v1            216591 228 -   1025902 -------ttttagtaaagttggggtttgtccatattgcccgggctggtcttaaactctggacctcaggtgatccacctgcctcggccacccaaagtgctgggattacaagcgt---gagccaccgcacctggccCGAGGTCTCTTCTGAGCGGGCAGAGTCCTGTGGCTCGGCCCTGGCCCGCCTG-AAGGCGAAGATGGGTGGCTTTTCCAGCCCTGGGATCGGTGCTGTCTTGCACA
i cerAty1.NW_012001098v1         C 0 I 35
s chlSab2.chrUn_KE147541v1          169489 227 -    811265 ----------tagtaaagatggggtttgtccatattgcccgggctggtcttgaactctggacctcaggtgatccacctgcctcggccgcccaaagtgctgggattacaagcgtgaagagccactgcacctggccCGAGGTCTCTTCTGAGCAGGCAGAGTCCTGTGGCTCGGCCCTGGCCCGCCTG-AAGGTGAAGAGAGGCAGCTTTTCCAGCCCTGGGATCGGTGCTGTCTTGCAC-
i chlSab2.chrUn_KE147541v1       C 0 I 35
s manLeu1.NW_012108508v1            166710 231 -    350446 -------ttttagtaaagatggggtttgtccatattgcccgggctggtcttgaactctggacctcaggtgatccacctgcctcggccgcccaaagtgctgggattacaagcgtgaggagccaccgcacctggccCGAGGTCTCTTCTGAGCGGGCAGAGTCCTGTGGCTCGGCCCTGGCCCGCCTG-AAGGTGCAGACGGGTGGCTTTTCCAGCCCTGGGATCGGTGCTGTCTTGCACA
i manLeu1.NW_012108508v1         M 1783 I 20
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            317956 1066 +   1230721 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=781220.000000
s hg38.chrX_KI270880v1_alt          174555 318 +    284869 AATCTCCACCTCCGAAGGAAGGAAGAACAAGGGATTTATAGAGATGCCTTTGGGAGCTTCAGAAGAAAGAGGGTGTAATCTTGCTGGTTGATATAATTTTGG-ATGAAGGCACTGTCCTCCAAGCTCACAAACACACAGGACCAGAGAGAAGGACGGAGGAGATGGGGTTTCAGCGAGGGAGGTGGGAGAACAGGCCTGGCCTGTTGGGGGTAGAACGTAGAAGAAAAGGGCAATCTGAGAGATGAACAGGGGAC-GGTATTAAGTGCGTGCCCCCACACACATGCGCACATGTCCGGAAGGCAAGCACACACCCACCGT
s panTro5.chrX                      338646 318 + 155549662 AATCTCCACCCCCGAAGGAAGGAAGAACAAGGGATTTATAGAGATGCCTTTGGGAGCTTCAGAAGAAAGAGGGTGTAATCTTGCTGTTTGATATAATTTTGG-ATGGAGGCACTGTCCTCCAAGCTCACAAACACACAGGACCAGAGAGAAGGACGGAGGAGATGGGGTTTCAGCGAGGGAGGTGGGAGAACAGGCCTGGCCTGTTGGGGGTAGAACGTAGAAGAAAAGGGCAATCTGAGAGATGAACAGGGGAC-GGTATTAAGTGCGTGCCCCCACACACATGCGCACATGTCCGGAAGGCAAGCACACACCCACTGT
i panTro5.chrX                   C 0 I 748
s gorGor5.CYUI01015925v1            247175 315 +    417917 AATCTCCACCTCCGAAGG-AGGAAGAACAAGGGATTTATAGAGATGCCTTTGGGAGCTTCAGAAGAAAGAGGGTGTAAT-TTGCTGTTTGATATAATTTTGGTTTGGAGGCACTGTCCTCCAAGCTCACAAACACGCAGGACCAGAGAGAAGGAC-GAGGAGA-GGGGTTTCAGCGAGGGAGGTGGGAGAACAGGCCTGGCCTGTTGGCGGTAGAACGTAGAAGAAAAAGGCAATCTGAGAGATGAACAGGGGACGGGTATTAAGTACGTGCCCCCACACACATGTG-ACATGTCCGGAAGGCAAGCACACACCCACCGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26477 282 +     35312 AATCTCCACCTCTGAAGGAAGGAAGAACAAGGGATTTATAGAGATGCCTTTGGGAGCTTCAGAAGAAAGAGGGTGTAATCTTGCCATTTGATATAATTTTGG-ACGGAGGCACTGTCCTCCAAG--------------------GAGACAAGG----------------TTCAGCGAGGGAGGTGGGAGAACAGGCCTGGCCTGTTGGGGGTAGAACGTAGAAGAAAAGGGCAATCTGATCGATGAACAGGGGAC-GGTATGAAGTGCCTGACCCCACACACACGCGCACATGTCTGGAAGGCAAGCACACAGCCACCGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311164 286 + 180051392 AATCTCCACCTGCAAAGGAAGGAAGAACGAGGAATTTCTAGAGATGCCTTTGGGAGCTTCAGAAGGAAGAGGGTGTAATCTTGCTGTTTGATATAATGTTGG-ACGGAGGCGCCGTCCTCCAAGCTCACAAACACACGGGACCAGAGAGAAGGATGGAGGAGACGGGGTTCCAGGGAGGCAGGTGGGAGAACAGGTGT------------------------------GGGCGATCTCAGGGATGAACAGGGGAC-GGTATGAAGTGCTTGACCCCACACACA--CACACATAGCCAGAAGGTAAGCACACAGCCACTGT
i rheMac8.chr6                   I 35 C 0
s cerAty1.NW_012001098v1            216854 288 -   1025902 AATCTCCACCTGCAAAGGAAGGAAGAACGAGGAATTTCTGGAGATGCCTTTGGGAGCTTCAGAAGGAAGAGGGTGTAATGTTGCTGTTTGATATAATGTTGG-ACGGAGGCGCCGTCCTCCAAGCTCAGAAACACACGGGACCAGAGAGAAGGACGGAGGAGACGGGGTTTCAGGGAGGCAGGTGGGAGAACGGGCGT------------------------------GGGCGATCTCAGGGATGAACAGGGGAC-GGTACGAAATGTCTGACCCCACACACACTCACACATAGCCGGAAGGTAAGCACACAGCCACCGT
i cerAty1.NW_012001098v1         I 35 C 0
s chlSab2.chrUn_KE147541v1          169751 318 -    811265 AATCTCCACCTGCAAAGGAAGGAAGAAGGAGGAATTTCTAGAGATGCCTTTGGGAGCTTCAGAAGGAAGAGGGTGTAATCTTGCTGTTTGATATAGTGTTGG-ATGGAGGCGCCGTCCTCCAAGCTCACAAACACACGGGACCAGAAAAAAGGACAGAGGAGACGGGGTTTCAGCGAGGCAGGTGGGAGAACAGGCCTGGCCTGTCGGGGGTAGAACGTAGAAGAAAAGGGCGACCTCAGGGATGAACAGGGGAC-GGTATGAAATGCCTGAGCCCACACACACTCACACATATCCAGAAGGTAAGCACACAGCCACCGT
i chlSab2.chrUn_KE147541v1       I 35 C 0
s manLeu1.NW_012108508v1            166961 284 -    350446 ----TCCACCTGCAAAGGAAGGAAGAACGAGGAATTTCTAGAGATGCCTTTGGGAGCGCCAGAAGGAAGAGGGTGTAATCTTGCTGTTTGATATAATGTTGG-ACGGAGGCACCATCCTCCAAGCTCACAAACACACGGGACCAGAGAGAAGGATGGAGGAGACGGGGTTTCAGGGAGGCAGGTGGGAGAACAGGCGT------------------------------GGGCGATCTCAGGGATGAACAGGGGAC-GGTACGAAATGTCTGACCCCACACACACTCACACATAGCCGGAAGGTAAGCACACAGCCACCGT
i manLeu1.NW_012108508v1         I 20 C 0
s colAng1.NW_012115411v1            319022 318 +   1230721 AATCTCCACCTCCGAAGGAAGGAAGAACAAGGGATGTATAGAGATGCCTTTGGGAGCTTCAGAAGGAAGAGGGTGTAATCTCGCCATTTGATATAATGTTGG-ACGGAGGCACTGTCCTCCAAGCTCACAAACACACGGGGCCAGAGAGAAGGACGGAGGACAAGGGGTTTCAGCGAGGCAGGTGGGAAAACAGGCCTGGCCTGTCGGGGGTAGAATGTAGAAGAAAAGGGCGATCTCGGGGATGAACAGGGGAC-GGTATGAAATGCCTGACCCCACACACACTCACACGTATCCAGAAGGCAAGCGCACAGCCACCGT
i colAng1.NW_012115411v1         I 1066 C 0
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=37518.000000
s hg38.chrX_KI270880v1_alt          174873 13 +    284869 CATGAGCCCTCAC
s panTro5.chrX                      339712 13 + 155549662 CATGAGCACTCAC
i panTro5.chrX                   I 748 C 0
s gorGor5.CYUI01015925v1            247490 13 +    417917 CATGAGCCCTCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26759 13 +     35312 CATGAGCCCTCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311450 13 + 180051392 GGTGAGCCCTCAC
i rheMac8.chr6                   C 0 C 0
s cerAty1.NW_012001098v1            217142 13 -   1025902 CGTGAGCCCTCAC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170069 13 -    811265 CGTGAGCCCTCAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167245 13 -    350446 CGTGAGCCCTCAC
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            319340 13 +   1230721 CGTGAGCCCTCAG
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       82179 5405 -    177848 I

a score=112836.000000
s hg38.chrX_KI270880v1_alt          174886 33 +    284869 GTGCAGGTGCATGCACGCATTCTTGCAAACCCC
s panTro5.chrX                      339725 33 + 155549662 GTGCAGGTGCATGCACGCATTCTTGCAAACCCC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87584 31 -    177848 GTGCAGGTGCATGCACGCATTC-TGC-AACCCC
i panPan2.chrUn_NW_014024190v1   I 5405 C 0
s gorGor5.CYUI01015925v1            247503 32 +    417917 GTGCAGGTGCATGCACGCATTCTTGC-AAGCCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26772 33 +     35312 GTGCAGGTGCATGCATGCATTCTTGCAAACCCC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311463 33 + 180051392 GTGCAGGTGCAGGCACGCAGTCTTGCAAGTCCC
i rheMac8.chr6                   C 0 C 0
s cerAty1.NW_012001098v1            217155 33 -   1025902 GTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170082 33 -    811265 GTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167258 33 -    350446 GTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i manLeu1.NW_012108508v1         C 0 T 69
s colAng1.NW_012115411v1            319353 33 +   1230721 GTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i colAng1.NW_012115411v1         C 0 C 0
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=48545.000000
s hg38.chrX_KI270880v1_alt          174919 30 +    284869 ACACATGCACACAAGCCCATATGCATATAT
s panTro5.chrX                      339758 30 + 155549662 ACACATGCACACAAGCACATATGCATATAC
i panTro5.chrX                   C 0 T 635
s panPan2.chrUn_NW_014024190v1       87615 30 -    177848 ACACATGCACACAAGCACATATGCATATAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            247535 30 +    417917 ACGCATGCACACAAGCCCATATGCATATAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26805 30 +     35312 ACACATGCACAAAAGCCCATATGCATATAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311496 29 + 180051392 -CGCGGGCACACAAGCACATATGCATATAC
i rheMac8.chr6                   C 0 C 0
s chlSab2.chrUn_KE147541v1          170115 29 -    811265 -CACAGGCACACAAGCACACATGCATATAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=1314.000000
s hg38.chrX_KI270880v1_alt          174949 1 +    284869 G
s panTro5.chrX                      339153 1 + 155549662 G
i panTro5.chrX                   T 635 C 0
s panPan2.chrUn_NW_014024190v1       87645 1 -    177848 A
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            247565 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26835 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311525 1 + 180051392 G
i rheMac8.chr6                   C 0 C 0
s chlSab2.chrUn_KE147541v1          170144 1 -    811265 G
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=24728.000000
s hg38.chrX_KI270880v1_alt          174950 18 +    284869 TGTACAGAAGGCAAGCAC
s panTro5.chrX                      339154 18 + 155549662 TGTACAGAAGGCAAGCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87646 18 -    177848 TGTACAGAAGGCAAGCAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26836 18 +     35312 TGTACAGAAGGCAAGCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311526 18 + 180051392 TGTACAGAAGGCAAACAC
i rheMac8.chr6                   C 0 C 0
s chlSab2.chrUn_KE147541v1          170145 18 -    811265 TGTACAGAAGGCAAACAC
i chlSab2.chrUn_KE147541v1       C 0 T 119
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566  0 +    417917 C

a score=36390.000000
s hg38.chrX_KI270880v1_alt          174968 45 +    284869 ACATTCACAGTCATGAGCCCTCACGTGCAGGTGCATGCACGCATT
s panTro5.chrX                      339172 45 + 155549662 ACATTCACAGTCATGAGCCCTCACGTGCAGGTGCATGCACGCATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87664 45 -    177848 ACATTCACAGTCATGAGCCCTCACGTGCAGGTGCATGCACGCATT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26854 45 +     35312 ACATTCACAGTCATGAGCCCTCACGTGCAGGTGCGTGCACGCATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143311544 41 + 180051392 ----TCACAGCAACAAGCACTCACATGCAGGTGCATGCATGCATT
i rheMac8.chr6                   C 0 I 1
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566  0 +    417917 C

a score=6468.000000
s hg38.chrX_KI270880v1_alt          175013 13 +    284869 CTTGCAAGCCCCA
s panTro5.chrX                      339217 13 + 155549662 CTTGCAAACCCCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87709 13 -    177848 CTTGCAAACACCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26899 13 +     35312 CTTGCAAACCCCA
i nomLeu3.chrX_GL398042_1_random C 0 I 106
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566  0 +    417917 C

a score=20835.000000
s hg38.chrX_KI270880v1_alt          175026 41 +    284869 CACATGCACACAAGTGCATATGCATATACATGTACAGAAGG
s panTro5.chrX                      339230 41 + 155549662 CACATGCACACAAGCCCATATGCATATACATGTACAGAAGG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87722 41 -    177848 CACATGCACACAAGCACATATGCATATACGTGTACAGAAGG
i panPan2.chrUn_NW_014024190v1   C 0 T 90
s nomLeu3.chrX_GL398042_1_random     27018 41 +     35312 CACATGCACACAAGCCCATTTGCATATACGTGTACAGAAGG
i nomLeu3.chrX_GL398042_1_random I 106 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566  0 +    417917 C

a score=2019.000000
s hg38.chrX_KI270880v1_alt          175067 7 +    284869 CAAGCAC
s panTro5.chrX                      339271 7 + 155549662 CAAGCAC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27059 7 +     35312 CAAGCAC
i nomLeu3.chrX_GL398042_1_random C 0 T 101
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=91.000000
s hg38.chrX_KI270880v1_alt          175074 1 +    284869 A
s panTro5.chrX                      339278 1 + 155549662 A
i panTro5.chrX                   C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e nomLeu3.chrX_GL398042_1_random     27066 101 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=873.000000
s hg38.chrX_KI270880v1_alt          175075 3 +    284869 CAC
s panTro5.chrX                      339279 3 + 155549662 CAC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26965 3 +     35312 CAC
i nomLeu3.chrX_GL398042_1_random T 101 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  239804 3784 +    465904 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=1213.000000
s hg38.chrX_KI270880v1_alt          175078 3 +    284869 AGC
s panTro5.chrX                      339282 3 + 155549662 AGC
i panTro5.chrX                   C 0 T 321
s nomLeu3.chrX_GL398042_1_random     26968 3 +     35312 AGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225846 3 -    465904 AGT
i saiBol1.JH378345               T 20837 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=30127.000000
s hg38.chrX_KI270880v1_alt          175081 78 +    284869 CATGAGCCCTCACGTGCAGGTGCATGCATGCATTCTTGCAAACCCCACACATGCACACAAGCCCATATGCATATATGT
s panTro5.chrX                      338964 78 + 155549662 CATGAGCCCTCACGTGCAGGTGCATGCATGCATTCTTGCAAGCCCTACACATGCACACAAGCACATATGCATATATGT
i panTro5.chrX                   T 321 C 0
s nomLeu3.chrX_GL398042_1_random     26971 78 +     35312 CATGAGCCCTCACGCGCAGATGCATGCACGCATTCCTGCAAACCCCACACATGCACACAAGCCCATTTGCATATACGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225849 78 -    465904 CATGAGCACTCAGACACATGTCGGTGCTTGCACCCATGCAAGCTTCCCACATGCACAGAATCACACATCCATATACGT
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247566  0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=12448.000000
s hg38.chrX_KI270880v1_alt          175159 26 +    284869 GTACAGAAGTCAAGCACACACTGATA
s panTro5.chrX                      339042 26 + 155549662 GTACAGAAGTCAAGCACACACTGATA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247566 26 +    417917 GTACAGAAGTCAAGCACAGAGTGATA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27049 26 +     35312 GTACAGAAGGCAAGCACCCAGCCACC
i nomLeu3.chrX_GL398042_1_random C 0 T 212
s saiBol1.JH378345                  225927 26 -    465904 ATATGAAAAGCAAGCACCCAGCCCAA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=35181.000000
s hg38.chrX_KI270880v1_alt          175185 68 +    284869 GTCATGAGCGCTCACATACAACTGCATGCATGCATTCATTCAAGCTCC-CACATGCACAGATGCACACA
s panTro5.chrX                      339068 68 + 155549662 GTCATGAGCGCTCACATACAACTGCATGCACGCATTCATTCAAGCCCC-CACATGCACAGATGCACACA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247592 68 +    417917 GTCATGACCACTCACATACAACTGCATGCATGCATTCATTCAAGCCCA-CACATGCGCAGATGCACACA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26863 69 +     35312 GTCATGAGCCCTCACGTGCAGGTGCGTGCACGCATTCTTGCAAACCCCACACATGCGCAAAAGCCCATA
i nomLeu3.chrX_GL398042_1_random T 212 C 0
s saiBol1.JH378345                  225953 61 -    465904 GACGTGAGCATTCACACAGAACTGCAGGTGTGTGTGCATGGAAG--------ATGCACACGTGCACACA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=3630.000000
s hg38.chrX_KI270880v1_alt          175253 8 +    284869 GGTATCTC
s panTro5.chrX                      339136 8 + 155549662 GGCATCTC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247660 8 +    417917 GGCATCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s saiBol1.JH378345                  226014 8 -    465904 GGCCTCTC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e nomLeu3.chrX_GL398042_1_random     26932 0 +     35312 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=24081.000000
s hg38.chrX_KI270880v1_alt          175261 35 +    284869 TGCACAGAGGTGTACAGAAGGCAAGCACACATTCA
s panTro5.chrX                      339144 35 + 155549662 TGCACGGAGGTGTACAGAAGGCAAGCACACATTCA
i panTro5.chrX                   C 0 I 2
s gorGor5.CYUI01015925v1            247668 35 +    417917 TGCACAGAGGTGTACGGAAGGCAAGCACACATTCA
i gorGor5.CYUI01015925v1         C 0 I 2
s nomLeu3.chrX_GL398042_1_random     26932 35 +     35312 TGCATATACGTGTACAGAAGGCAAGCACACATTCA
i nomLeu3.chrX_GL398042_1_random C 0 I 2
s saiBol1.JH378345                  226022 35 -    465904 TGCACACACGCGTAGTGAAGGCAGCTACACACCCA
i saiBol1.JH378345               C 0 I 2
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87763 90 -    177848 T

a score=20010.000000
s hg38.chrX_KI270880v1_alt          175296 15 +    284869 GTCATGAGCCCTCAC
s panTro5.chrX                      339181 15 + 155549662 GTCATGAGCCCTCAC
i panTro5.chrX                   I 2 C 0
s panPan2.chrUn_NW_014024190v1       87673 15 -    177848 GTCATGAGCCCTCAC
i panPan2.chrUn_NW_014024190v1   T 90 C 0
s gorGor5.CYUI01015925v1            247705 15 +    417917 GTCATGAGCCCTCAC
i gorGor5.CYUI01015925v1         I 2 C 0
s nomLeu3.chrX_GL398042_1_random     26969 15 +     35312 GTCATGAGCCCTCAC
i nomLeu3.chrX_GL398042_1_random I 2 C 0
s saiBol1.JH378345                  226059 15 -    465904 GTCACGAGCACTCAC
i saiBol1.JH378345               I 2 T 228
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=57013.000000
s hg38.chrX_KI270880v1_alt          175311 68 +    284869 GTGCAGGTGCATGCACGCATTCTTGCAAACCCCACACATGCACACAAGCCCATATGCATATATGTGTA
s panTro5.chrX                      339196 68 + 155549662 GTGCAGGTGCATGCACGCATTCTTGCAAACCCCACACATGCACACAAGCCCATATGCATATACATGTA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87688 68 -    177848 GTGCAGGTGCATGCACGCATTCTTGCAAACACCACACATGCACACAAGCACATATGCATATACGTGTA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            247720 68 +    417917 GTGCAGGTGCATGCATCTATTCTTGCAAACCCCACACATGCACACAAGCGCATATGCATATACATGTA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26984 68 +     35312 GCGCAGATGCATGCACGCATTCCTGCAAACCCCACACATGCACACAAGCCCATTTGCATATACGTGTA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 119 -    811265 T
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=2865.000000
s hg38.chrX_KI270880v1_alt          175379 2 +    284869 CA
s panTro5.chrX                      339264 2 + 155549662 CA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87756 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            247788 2 +    417917 CA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27052 2 +     35312 CA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s chlSab2.chrUn_KE147541v1          170044 2 -    811265 CA
i chlSab2.chrUn_KE147541v1       T 119 C 0
e manLeu1.NW_012108508v1            167291 69 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=107245.000000
s hg38.chrX_KI270880v1_alt          175381 69 +    284869 GAAGGCAAGCACACACCCACAGCCATGAGCCCTCACGTGCAGGTGCATGCATGCATTCATTCAAGCCTC
s panTro5.chrX                      339266 65 + 155549662 GAAGGCAAGCACACAC----AGCCATGAGCCCTCATGTGCAGGTGCATGCACGCATTCTTGCAAGCCCC
i panTro5.chrX                   C 0 I 1
s panPan2.chrUn_NW_014024190v1       87758 69 -    177848 GAAGGCAAGCACACATTCACAGCCATGAGCCCTCACGTGCAGGTGCATGCACGCATTCTTGCAAACCCC
i panPan2.chrUn_NW_014024190v1   C 0 I 1
s gorGor5.CYUI01015925v1            247790 65 +    417917 GAAGGCAAGCACACAC----AGCCATGAGCCCTCACATGCAGGTGCATGCACGCATTCTTGCAAGCCCC
i gorGor5.CYUI01015925v1         C 0 I 1
s nomLeu3.chrX_GL398042_1_random     27054 69 +     35312 GAAGGCAAGCACCCAGCCACCGTCATGAGCCCTCACGTGCAGGTGCATTCACGCATTCTTGCAAACCCC
i nomLeu3.chrX_GL398042_1_random C 0 T 211
s chlSab2.chrUn_KE147541v1          170046 69 -    811265 GAAGGTAAGCACACAGCCACCGTCGTGAGCCCTCACGTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167222 69 -    350446 GAAGGTAAGCACACAGCCACCGTCGTGAGCCCTCACGTGCAGGTGCAGGCACGCATTCTTGCAAGTCCC
i manLeu1.NW_012108508v1         T 69 C 0
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=56297.000000
s hg38.chrX_KI270880v1_alt          175450 36 +    284869 CACATGCACACAAGCCCATAT-GCATATATGTGTACA
s panTro5.chrX                      339332 36 + 155549662 CACATGCACACAAGCGCATAT-GCATATACATGTACA
i panTro5.chrX                   I 1 C 0
s panPan2.chrUn_NW_014024190v1       87828 36 -    177848 CACATGCACACAAGCACATAA-GCATATATGTGTACA
i panPan2.chrUn_NW_014024190v1   I 1 T 218
s gorGor5.CYUI01015925v1            247856 37 +    417917 CACATGCGCACAAGCCCATATGGCATATACATGTACA
i gorGor5.CYUI01015925v1         I 1 C 0
s nomLeu3.chrX_GL398042_1_random     26912 36 +     35312 CACATGCGCAAAAGCCCATAT-GCATATACGTGTACA
i nomLeu3.chrX_GL398042_1_random T 211 C 0
s chlSab2.chrUn_KE147541v1          170115 36 -    811265 CACAGGCACACAAGCACACAT-GCATATACGTGTACA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167291 36 -    350446 CGCAGGCACACAAGCACATAT-GCATATACGTGTACA
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=14118.000000
s hg38.chrX_KI270880v1_alt          175486 12 +    284869 GAAGGCAAGCAC
s panTro5.chrX                      339368 12 + 155549662 GAAGGCAAGCAG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247893 12 +    417917 GAAGGCAAGCCC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26948 12 +     35312 GAAGGCAAGCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s chlSab2.chrUn_KE147541v1          170151 12 -    811265 GAAGGCAAACAC
i chlSab2.chrUn_KE147541v1       C 0 I 27
s manLeu1.NW_012108508v1            167327 12 -    350446 GAAGGCAAACAC
i manLeu1.NW_012108508v1         C 0 T 48
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=1851.000000
s hg38.chrX_KI270880v1_alt          175498 8 +    284869 ACATTCAC
s panTro5.chrX                      339380 4 + 155549662 ACA----C
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247905 8 +    417917 ACATTCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26960 8 +     35312 ACATTCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 27 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319386 0 +   1230721 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=33087.000000
s hg38.chrX_KI270880v1_alt          175506 50 +    284869 AGTCATGAGCCCTCACGTGCAGGTGCATGCACGCATTCTTGCAAGCCCCA
s panTro5.chrX                      339384 50 + 155549662 AGCCATGAGCCCTCACGTGCAGGTGCATGCATGCATTCTTGCAAACCCCA
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247913 50 +    417917 AGTCATGAGCACTCACGTGCAGGTACATGCACGCATTCTTGCAAACCCCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     26968 50 +     35312 AGTCATGAGCCCTCACGCGCAGATGCATGCACGCATTCCTGCAAACCCCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225846 50 -    465904 AGTCATGAGCACTCAGACACATGTCGGTGCTTGCACCCATGCAAGCTTCC
i saiBol1.JH378345               T 228 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 27 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319386  0 +   1230721 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=30274.000000
s hg38.chrX_KI270880v1_alt          175556 29 +    284869 CACATGCACACAAGCCCATATGCATATAT
s panTro5.chrX                      339434 29 + 155549662 CACATGCACACAAGCCCATATGCATATAT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247963 29 +    417917 CACATGCACACAAGCCCATATGCATATAT
i gorGor5.CYUI01015925v1         C 0 T 426
s nomLeu3.chrX_GL398042_1_random     27018 29 +     35312 CACATGCACACAAGCCCATTTGCATATAC
i nomLeu3.chrX_GL398042_1_random C 0 I 212
s colAng1.NW_012115411v1            319386 29 +   1230721 CACAGGCACACAAGCACATGTGCGTCTAC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  225896 29 -    465904 CACATGCACAGAATCACACATCCATATAC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 27 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=898.000000
s hg38.chrX_KI270880v1_alt          175585 2 +    284869 GT
s panTro5.chrX                      339463 2 + 155549662 GT
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27259 2 +     35312 AC
i nomLeu3.chrX_GL398042_1_random I 212 I 2
s colAng1.NW_012115411v1            319415 2 +   1230721 GT
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  225925 2 -    465904 GT
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 27 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e rheMac8.chr6                   143311585 1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            247992 426 +    417917 T
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=27292.000000
s hg38.chrX_KI270880v1_alt          175587 48 +    284869 GTACA-GAAGGCAAGCACACACTGATAGTCATGAGCGCTCACATACAAC
s panTro5.chrX                      339465 48 + 155549662 GTACA-GAAGGCAAGCACACAGTGATAGTCATGAGCACTCACATACAAC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247566 48 +    417917 GTACA-GAAGTCAAGCACAGAGTGATAGTCATGACCACTCACATACAAC
i gorGor5.CYUI01015925v1         T 426 C 0
s nomLeu3.chrX_GL398042_1_random     27263 41 +     35312 ACACACAAACACAGGCACACA--------CATGTGCACACACCCACAGG
i nomLeu3.chrX_GL398042_1_random I 2 C 0
s colAng1.NW_012115411v1            319417 48 +   1230721 GTACA-GGAGGCAAACACACACTCACAGCAACTAGCACTCACATGCAGG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  225927 48 -    465904 ATATG-AAAAGCAAGCACCCAGCCCAAGACGTGAGCATTCACACAGAAC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170163 27 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=17179.000000
s hg38.chrX_KI270880v1_alt          175635 15 +    284869 TGCATGCATGCATTC
s panTro5.chrX                      339513 15 + 155549662 TGCATGCATGCATTC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247614 15 +    417917 TGCATGCATGCATTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27304 15 +     35312 TAGAAACACGCACCC
i nomLeu3.chrX_GL398042_1_random C 0 I 248
s chlSab2.chrUn_KE147541v1          170190 15 -    811265 TGCATGCATGCATTT
i chlSab2.chrUn_KE147541v1       I 27 C 0
s colAng1.NW_012115411v1            319465 15 +   1230721 TGCATACATGCATTC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  225975 15 -    465904 TGCAGGTGTGTGTGC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e rheMac8.chr6                   143311585  1 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=49853.000000
s hg38.chrX_KI270880v1_alt          175650 32 +    284869 ATTCAAGCCCCCACATGCACAGATGCACACAG
s panTro5.chrX                      339528 32 + 155549662 ATTCAAGCCCCCACATGCACAGATGCACACAG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247629 32 +    417917 ATTCAAGCCCACACATGCGCAGATGCACACAG
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27567 28 +     35312 ACTCAAA----CACATGCATAGTGACACACGG
i nomLeu3.chrX_GL398042_1_random I 248 C 0
s rheMac8.chr6                   143311586 32 + 180051392 ATTCAAGCCCCCCCATGCACATATGCACACAG
i rheMac8.chr6                   I 1 I 489
s chlSab2.chrUn_KE147541v1          170205 32 -    811265 ATTCAAGCCCCCCCATGCACATATGCACACAG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            319480 32 +   1230721 ATTCAAGTCCCCCCAGGCACATATGCACACAG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  225990 25 -    465904 ATGGAAG-------ATGCACACGTGCACACAG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=1815.000000
s hg38.chrX_KI270880v1_alt          175682 2 +    284869 GT
s panTro5.chrX                      339560 2 + 155549662 GC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247661 2 +    417917 GC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27595 2 +     35312 AT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s chlSab2.chrUn_KE147541v1          170237 2 -    811265 GT
i chlSab2.chrUn_KE147541v1       C 0 I 103
s colAng1.NW_012115411v1            319512 2 +   1230721 GC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  226015 2 -    465904 GC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=-153.000000
s hg38.chrX_KI270880v1_alt          175684 5 +    284869 ATCTC
s panTro5.chrX                      339562 5 + 155549662 ATCTC
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247663 5 +    417917 ATCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27597 3 +     35312 TAG--
i nomLeu3.chrX_GL398042_1_random C 0 T 553
s colAng1.NW_012115411v1            319514 5 +   1230721 ATCTC
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  226017 5 -    465904 CTCTC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=5902.000000
s hg38.chrX_KI270880v1_alt          175689 9 +    284869 TGCACAGAG
s panTro5.chrX                      339567 9 + 155549662 TGCACGGAG
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247668 9 +    417917 TGCACAGAG
i gorGor5.CYUI01015925v1         C 0 I 315
s colAng1.NW_012115411v1            319519 9 +   1230721 TGCACACAG
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  226022 9 -    465904 TGCACACAC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e nomLeu3.chrX_GL398042_1_random     27600 553 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=1500.000000
s hg38.chrX_KI270880v1_alt          175698 1 +    284869 G
s panTro5.chrX                      339576 1 + 155549662 G
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            247992 1 +    417917 G
i gorGor5.CYUI01015925v1         I 315 C 0
s nomLeu3.chrX_GL398042_1_random     27047 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random T 553 C 0
s colAng1.NW_012115411v1            319528 1 +   1230721 G
i colAng1.NW_012115411v1         C 0 C 0
s saiBol1.JH378345                  226031 1 -    465904 G
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87864 218 -    177848 T

a score=64981.000000
s hg38.chrX_KI270880v1_alt          175699 42 +    284869 TGTACAGAAGGCAAGCACACATTCACAGTCATGAGCCCTCAC
s panTro5.chrX                      339577 42 + 155549662 TGTACAGAAGGCAAGCACACATTCACAGTCATGAGCCCTCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87646 42 -    177848 TGTACAGAAGGCAAGCACACATTCACAGTCATGAGCCCTCAC
i panPan2.chrUn_NW_014024190v1   T 218 C 0
s gorGor5.CYUI01015925v1            247993 42 +    417917 TGTACAGAAGGCAAGCACACATTCACCGTCATGAGCCCTCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27048 42 +     35312 TGTACAGAAGGCAAGCACCCAGCCACCGTCATGAGCCCTCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s colAng1.NW_012115411v1            319529 42 +   1230721 TGTACAGAAGGCAGGCACTCACCCAGAGTCATGAGCACTCAC
i colAng1.NW_012115411v1         C 0 T 1149
s saiBol1.JH378345                  226032 42 -    465904 CGTAGTGAAGGCAGCTACACACCCACCGTCACGAGCACTCAC
i saiBol1.JH378345               C 0 T 228
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=68924.000000
s hg38.chrX_KI270880v1_alt          175741 93 +    284869 GTGCAGGTGCATGCACGCATTCTTGCAAACCCCACACATGCACAC-AAGCTCATATGCATATAC--GTGTACAGAAGGCAAGCACACACCCACAGC
s panTro5.chrX                      339619 93 + 155549662 GTGCAGGTGCATGCATGCATTCTTGCAAGCCTCACACATGCACAC-AAGCACATATGCATATAC--GTGTACAGAAGGCAAGCACACATTCACAGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87688 93 -    177848 GTGCAGGTGCATGCACGCATTCTTGCAAACACCACACATGCACAC-AAGCACATATGCATATAC--GTGTACAGAAGGCAAGCACACATTCACAGC
i panPan2.chrUn_NW_014024190v1   C 0 T 106
s gorGor5.CYUI01015925v1            248035 92 +    417917 GTGCAGGtgcatgcatgcattcttgcaagcctcacacatgcaCCCAAAGCCCATACGCATATACCGTTGTACAGAAGGCAAGCACA----CACAGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27090 93 +     35312 GTGCAGGTGCATTCACGCATTCTTGCAAACCCCACACATGCACAA-AAGCCCATATGCATATAC--ATGTACAGAAGGCAAGCACCCAGCCACCGT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=32626.000000
s hg38.chrX_KI270880v1_alt          175834 37 +    284869 CATGAGCCCTCACGTGCAGGTGCATGCATGCATTCTT
s panTro5.chrX                      339712 37 + 155549662 CATGAGCACTCACGTGCAGGTGCATGCACGCATTCTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87675 37 -    177848 CATGAGCCCTCACGTGCAGGTGCATGCACGCATTCTT
i panPan2.chrUn_NW_014024190v1   T 106 T 105
s gorGor5.CYUI01015925v1            248127 37 +    417917 CATGAGCCCTCACATGCAGGTGCATGCACGCATTCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27183 37 +     35312 CATGAGCCCTCACATGCAGGTGCATGCATGCATTCCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=38339.000000
s hg38.chrX_KI270880v1_alt          175871 65 +    284869 GCAAACCTCACACATGCACCCAAGCCCATATGCATATATGTGTA-CA---GAAGGCAAGCACACATTCA
s panTro5.chrX                      339749 65 + 155549662 GCAAACCCCACACATGCACACAAGCACATATGCATATACACGTA-CA---GAAGGCAAGCACACATTCA
i panTro5.chrX                   C 0 I 106
s panPan2.chrUn_NW_014024190v1       87607 64 -    177848 GC-AACCCCACACATGCACACAAGCACATATGCATATACATGTA-CA---GAAGGCAAGCACACATTCA
i panPan2.chrUn_NW_014024190v1   T 105 C 0
s gorGor5.CYUI01015925v1            248164 65 +    417917 GCAACACCCACACATGCACGAAAGCCCATATGCATATATGTGTATCA---GAAGGCAA-CACACATTCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27220 64 +     35312 GCAAACCCCACACATGCACACAAGCCCATGTGCATATACACAGA-CACACAAACACAGGCACACA----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=600.000000
s hg38.chrX_KI270880v1_alt          175936 1 +    284869 C
s panTro5.chrX                      339920 1 + 155549662 C
i panTro5.chrX                   I 106 C 0
s panPan2.chrUn_NW_014024190v1       87671 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248229 1 +    417917 C
i gorGor5.CYUI01015925v1         C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  226074 228 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27284 0 +     35312 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=72673.000000
s hg38.chrX_KI270880v1_alt          175937 101 +    284869 AGTCATGAGCCCTCATGTGCAGGTGCATGCACGCATTCTTGCAAGCC---TCACACATGCACACAAGCACATATGCAT--ATACGTGT--------ACAGA---AGGCAAGCACACA
s panTro5.chrX                      339921  99 + 155549662 AGCCATGAGCCCTCACGTGCAGGTGCATGCACGCATTCTTGCAAACC---CCACACATGCACACAAGCACATATGCAT--ATATGTGT--------ACAGA---AGGCAAGCACA--
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87672 101 -    177848 AGTCATGAGCCCTCACGTGCAGGTGCATGCACGCATTCTTGCAAACA---CCACACATGCACACAAGCACATATGCAT--ATACGTGT--------ACAGA---AGGCAAGCACACA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248230 100 +    417917 AGCCATGAGCCCTCATGTGCATGTGCATGCACACATTCTTGCAAACC---CCACACATGCAC-CAAGCCCATATGCAC--ATACGTGT--------ACAGA---AGGCAAGCACACA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27284 114 +     35312 ---CATGTGCACACACCCACAGGTAGAAACACGCACCCACACACATCTATTTTCATGTCAACACAGTCACACATAGATCAATGCGTGTGAGTAGCCACAGACTCACACACGTACACA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225846 101 -    465904 AGTCATGAGCACTCAGACACATGTCGGTGCTTGCACCCATGCAAGCT---TCCCACATGCACAGAATCACACATCCAT--ATACGTAT--------ATGAA---AAGCAAGCACCCA
i saiBol1.JH378345               T 228 C 0
e manLeu1.NW_012108508v1            167339  48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188   0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=7791.000000
s hg38.chrX_KI270880v1_alt          176038 26 +    284869 TTCACAGTCATGAGCCCTCACA------TGCA
s panTro5.chrX                      340020 24 + 155549662 --CACAGCCATGAGCCCTCACA------TGCA
i panTro5.chrX                   C 0 T 738
s panPan2.chrUn_NW_014024190v1       87773 26 -    177848 TTCACAGCCATGAGCCCTCACG------TGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27398 26 +     35312 ATCACACGGATCAGTGCACGTG------AGCA
i nomLeu3.chrX_GL398042_1_random C 0 I 6
s saiBol1.JH378345                  225947 32 -    465904 GCCCAAGACGTGAGCATTCACACAGAACTGCA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=874.000000
s hg38.chrX_KI270880v1_alt          176064 3 +    284869 GGC
s panPan2.chrUn_NW_014024190v1       87799 3 -    177848 GGT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27430 3 +     35312 GAC
i nomLeu3.chrX_GL398042_1_random I 6 I 6
s saiBol1.JH378345                  225979 3 -    465904 GGT
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      340044 738 + 155549662 T
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330 0 +    417917 C

a score=2970.000000
s hg38.chrX_KI270880v1_alt          176067 9 +    284869 --GCATGCACG
s panTro5.chrX                      339306 9 + 155549662 --GCATGCACG
i panTro5.chrX                   T 738 C 0
s panPan2.chrUn_NW_014024190v1       87802 9 -    177848 --GCATGCACG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27439 9 +     35312 --ACAGACACG
i nomLeu3.chrX_GL398042_1_random I 6 C 0
s saiBol1.JH378345                  225982 9 -    465904 GTGTGTGCA--
i saiBol1.JH378345               C 0 T 145
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188 0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330 0 +    417917 C

a score=3279.000000
s hg38.chrX_KI270880v1_alt          176076 17 +    284869 CATTCTTGCA-------------AGCCCCA
s panTro5.chrX                      339315 17 + 155549662 CATTCTTGCA-------------AGCCCCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87811 17 -    177848 CATTCTTGCA-------------AACCCCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27448 30 +     35312 GATCAGTGCACGTGAGCACACACAGATTCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167339 48 -    350446 T
e saiBol1.JH378345                  225991 145 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217188  0 -   1025902 C
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=45869.000000
s hg38.chrX_KI270880v1_alt          176093 52 +    284869 CACATGCACACAAGCACATAT---GCA-TATACATGTACAGA---AGGCAAGCACACAC
s panTro5.chrX                      339332 52 + 155549662 CACATGCACACAAGCGCATAT---GCA-TATACATGTACAGA---AGGCAAGCAGACAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87828 52 -    177848 CACATGCACACAAGCACATAA---GCA-TATATGTGTACAGA---AGGCAAGCACGCAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27478 59 +     35312 CACACATACACAATCACACACAGGGCAGCGCACATGAGCAGATACAGACTCACAGTCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            217188 52 -   1025902 CGCAGGCACACAAGCACATAT---GCA-TATACATGTACAGA---AGGCAAACACTCAC
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            167291 52 -    350446 CGCAGGCACACAAGCACATAT---GCA-TATACGTGTACAGA---AGGCAAACACTCAC
i manLeu1.NW_012108508v1         T 48 C 0
e saiBol1.JH378345                  225991 145 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=19342.000000
s hg38.chrX_KI270880v1_alt          176145 21 +    284869 AGCCATGAGCCCTCACGTGCA
s panTro5.chrX                      339384 21 + 155549662 AGCCATGAGCCCTCACGTGCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87880 21 -    177848 AGCCATGAGCCCTCACATGCA
i panPan2.chrUn_NW_014024190v1   C 0 T 138
s nomLeu3.chrX_GL398042_1_random     27537 21 +     35312 ACACAGGGCACTGCACATGAG
i nomLeu3.chrX_GL398042_1_random C 0 I 2
s cerAty1.NW_012001098v1            217240 21 -   1025902 AGCAACAAGCACTCACATGCA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            167343 21 -    350446 AGCAACAAGCACTCACATGCA
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  225846 21 -    465904 AGTCATGAGCACTCAGACACA
i saiBol1.JH378345               T 145 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=8419.000000
s hg38.chrX_KI270880v1_alt          176166 16 +    284869 ----GGTGC--------ATGCATGCATT
s panTro5.chrX                      339405 16 + 155549662 ----GGTGC--------ATGCATGCATT
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27560 24 +     35312 ----GATACAGACTCAAACACATGCATA
i nomLeu3.chrX_GL398042_1_random I 2 C 0
s cerAty1.NW_012001098v1            217261 16 -   1025902 ----GGTGC--------ATGCATGCATT
i cerAty1.NW_012001098v1         C 0 I 336
s manLeu1.NW_012108508v1            167364 16 -    350446 ----GGTGC--------ATGCATGCATT
i manLeu1.NW_012108508v1         C 0 I 490
s saiBol1.JH378345                  225867 16 -    465904 TGTCGGTGC--------TTGCACC----
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87901 138 -    177848 T

a score=8030.000000
s hg38.chrX_KI270880v1_alt          176182 54 +    284869 CTTGCAAAC-------CCCACACATGCACACAAGCCCATATGCATATATTTGTACAGAAGT
s panTro5.chrX                      339421 54 + 155549662 CTTGCAAAC-------CCCACACATGCACACAAGCCCATATGCATATATGTGTACAGAAGG
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27584 48 +     35312 GTGACACACGGATTAGTGCGTGTGGGCACACAGGCTCACACACATACA-------------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225883 54 -    465904 CATGCAAGC-------TTCCCACATGCACAGAATCACACATCCATATACGTATATGAAAAG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87901 138 -    177848 T

a score=5840.000000
s hg38.chrX_KI270880v1_alt          176236 18 +    284869 CAAGCACACAC-TGATAGT
s panTro5.chrX                      339475 18 + 155549662 CAAGCACACAG-TGATAGT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87763 18 -    177848 CAAGCACACAT-TCACAGC
i panPan2.chrUn_NW_014024190v1   T 138 C 0
s nomLeu3.chrX_GL398042_1_random     27632 19 +     35312 CAATCACACACAGGGCAGT
i nomLeu3.chrX_GL398042_1_random C 0 T 574
s saiBol1.JH378345                  225937 18 -    465904 CAAGCACCCAG-CCCAAGA
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=20641.000000
s hg38.chrX_KI270880v1_alt          176254 35 +    284869 CATGAGCGCTCACATACAACTGCATGCATGCATTC
s panTro5.chrX                      339493 35 + 155549662 CATGAGCACTCACATACAACTGCATGCATGCATTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87781 35 -    177848 CATGAGCCCTCACGTGCAGGTGCATGCACGCATTC
i panPan2.chrUn_NW_014024190v1   C 0 T 35
s nomLeu3.chrX_GL398042_1_random     27077 35 +     35312 CATGAGCCCTCACGTGCAGGTGCATTCACGCATTC
i nomLeu3.chrX_GL398042_1_random T 574 C 0
s saiBol1.JH378345                  225955 35 -    465904 CGTGAGCATTCACACAGAACTGCAGGTGTGTGTGC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C

a score=1409.000000
s hg38.chrX_KI270880v1_alt          176289 7 +    284869 ATTCAAG
s panTro5.chrX                      339528 7 + 155549662 ATTCAAG
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27112 7 +     35312 TTGCAAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  225990 7 -    465904 ATGGAAG
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=938.000000
s hg38.chrX_KI270880v1_alt          176296 4 +    284869 CTCC
s panTro5.chrX                      339535 4 + 155549662 CCCC
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27119 4 +     35312 CCCC
i nomLeu3.chrX_GL398042_1_random C 0 T 48
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  225997 0 -    465904 C
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=291.000000
s hg38.chrX_KI270880v1_alt          176300 3 +    284869 CAC
s panTro5.chrX                      339539 3 + 155549662 CAC
i panTro5.chrX                   C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  225997 0 -    465904 C
e nomLeu3.chrX_GL398042_1_random     27123 48 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330 0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=11279.000000
s hg38.chrX_KI270880v1_alt          176303 58 +    284869 ATGCACAGATGCACACAAGTATCTCTGCACAGAGGTGTACAGAAGGCAAGCACACATT
s panTro5.chrX                      339542 58 + 155549662 ATGCACAGATGCACACAGGCATCTCTGCACGGAGGTGTACAGAAGGCAAGCACACATT
i panTro5.chrX                   C 0 I 214
s saiBol1.JH378345                  225997 58 -    465904 ATGCACACGTGCACACAGGCCTCTCTGCACACACGCGTAGTGAAGGCAGCTACACACC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e nomLeu3.chrX_GL398042_1_random     27123 48 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248330  0 +    417917 C
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=1146.000000
s hg38.chrX_KI270880v1_alt          176361 2 +    284869 CA
s panTro5.chrX                      339814 2 + 155549662 CA
i panTro5.chrX                   I 214 C 0
s gorGor5.CYUI01015925v1            248330 2 +    417917 CA
i gorGor5.CYUI01015925v1         C 0 C 0
s saiBol1.JH378345                  226055 2 -    465904 CA
i saiBol1.JH378345               C 0 I 2
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e nomLeu3.chrX_GL398042_1_random     27123 48 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=1422.000000
s hg38.chrX_KI270880v1_alt          176363 2 +    284869 GT
s panTro5.chrX                      339816 2 + 155549662 GT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            248332 2 +    417917 GC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27075 2 +     35312 GT
i nomLeu3.chrX_GL398042_1_random T 48 C 0
s saiBol1.JH378345                  226059 2 -    465904 GT
i saiBol1.JH378345               I 2 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87816 35 -    177848 T

a score=17145.000000
s hg38.chrX_KI270880v1_alt          176365 13 +    284869 CATGAGCCCTCAC
s panTro5.chrX                      339818 13 + 155549662 CATGAGCCCTCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87781 13 -    177848 CATGAGCCCTCAC
i panPan2.chrUn_NW_014024190v1   T 35 C 0
s gorGor5.CYUI01015925v1            248334 13 +    417917 CATGAGCCCTCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27077 13 +     35312 CATGAGCCCTCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s saiBol1.JH378345                  226061 13 -    465904 CACGAGCACTCAC
i saiBol1.JH378345               C 0 T 188
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=71461.000000
s hg38.chrX_KI270880v1_alt          176378 92 +    284869 GTGCAGGTGCATGCACGCATTCTTGCAAACCCCACACATGCACACAAGCCCATATGCATATATGTGTACAGAAGGCAAGCACACATTCACAG
s panTro5.chrX                      339831 92 + 155549662 GTGCAGGTGCATGCACGCATTCTTGCAAACACCACACATGCACACAAGCACATATGCATATACATGTACAGAAGGCAAGCACACATTCACAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87794 88 -    177848 GTGCAGGTGCATGCACGCATTCTTGCAAACCCCACACATGCACACAAGCACATAAGCATATATGTGTACAGAAGGCAAGCACG----CACAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248347 92 +    417917 GTGCAGCTGCATGCACGCAGTCTTGCAAGCCCCACACATGTGCACAAGCGCATATGCATATATGTGTACAGAAGGCAAGCACACATTCACAG
i gorGor5.CYUI01015925v1         C 0 T 105
s nomLeu3.chrX_GL398042_1_random     27090 92 +     35312 GTGCAGGTGCATTCACGCATTCTTGCAAACCCCACACATGCACAAAAGCCCATATGCATATACATGTACAGAAGGCAAGCACCCAGCCACCG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  226074 188 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=67.000000
s hg38.chrX_KI270880v1_alt          176470 1 +    284869 T
s panTro5.chrX                      339923 1 + 155549662 C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87882 1 -    177848 C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27182 1 +     35312 T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  226074 188 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248439 105 +    417917 T

a score=16575.000000
s hg38.chrX_KI270880v1_alt          176471 18 +    284869 CATGAGCCCTCACGTGCA
s panTro5.chrX                      339924 18 + 155549662 CATGAGCCCTCACGTGCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87883 18 -    177848 CATGAGCCCTCACATGCA
i panPan2.chrUn_NW_014024190v1   C 0 T 208
s gorGor5.CYUI01015925v1            248334 18 +    417917 CATGAGCCCTCACGTGCA
i gorGor5.CYUI01015925v1         T 105 C 0
s nomLeu3.chrX_GL398042_1_random     27183 18 +     35312 CATGAGCCCTCACATGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  226074 188 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=15458.000000
s hg38.chrX_KI270880v1_alt          176489 19 +    284869 GGTGCATGCACGCATTCTT
s panTro5.chrX                      339942 19 + 155549662 GGTGCATGCACGCATTCTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87693 19 -    177848 GGTGCATGCACGCATTCTT
i panPan2.chrUn_NW_014024190v1   T 208 C 0
s gorGor5.CYUI01015925v1            248352 19 +    417917 GCTGCATGCACGCAGTCTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27201 19 +     35312 GGTGCATGCATGCATTCCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  226074 188 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=38855.000000
s hg38.chrX_KI270880v1_alt          176508 36 +    284869 GCAAGCCTCACACATGCACACAAGCCCATATGCATA
s panTro5.chrX                      339961 36 + 155549662 GCAAACCCCACACATGCACACAAGCACATATGCATA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87712 36 -    177848 GCAAACACCACACATGCACACAAGCACATATGCATA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248371 36 +    417917 GCAAGCCCCACACATGTGCACAAGCGCATATGCATA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27220 36 +     35312 GCAAACCCCACACATGCACACAAGCCCATGTGCATA
i nomLeu3.chrX_GL398042_1_random C 0 T 185
s saiBol1.JH378345                  225886 36 -    465904 GCAAGCTTCCCACATGCACAGAATCACACATCCATA
i saiBol1.JH378345               T 188 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=17721.000000
s hg38.chrX_KI270880v1_alt          176544 23 +    284869 TACGTGTACAGAAGGCAAGCACA
s panTro5.chrX                      339997 23 + 155549662 TATGTGTACAGAAGGCAAGCACA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87748 23 -    177848 TACGTGTACAGAAGGCAAGCACA
i panPan2.chrUn_NW_014024190v1   C 0 I 4
s gorGor5.CYUI01015925v1            248407 23 +    417917 TATGTGTACAGAAGGCAAGCACA
i gorGor5.CYUI01015925v1         C 0 I 4
s saiBol1.JH378345                  225922 23 -    465904 TACGTATATGAAAAGCAAGCACC
i saiBol1.JH378345               C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e nomLeu3.chrX_GL398042_1_random     27256 185 +     35312 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=2865.000000
s hg38.chrX_KI270880v1_alt          176567 2 +    284869 CA
s panTro5.chrX                      340020 2 + 155549662 CA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87775 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1   I 4 C 0
s gorGor5.CYUI01015925v1            248434 2 +    417917 CA
i gorGor5.CYUI01015925v1         I 4 C 0
s nomLeu3.chrX_GL398042_1_random     27071 2 +     35312 CA
i nomLeu3.chrX_GL398042_1_random T 185 C 0
s saiBol1.JH378345                  225945 2 -    465904 CA
i saiBol1.JH378345               C 0 T 26281
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=2090.000000
s hg38.chrX_KI270880v1_alt          176569 3 +    284869 CAG
s panTro5.chrX                      340022 3 + 155549662 CAG
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87777 3 -    177848 CAG
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248436 3 +    417917 CAG
i gorGor5.CYUI01015925v1         C 0 I 1
s nomLeu3.chrX_GL398042_1_random     27073 3 +     35312 CCG
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=16762.000000
s hg38.chrX_KI270880v1_alt          176572 19 +    284869 CCATGAGCCCTcacatgca
s panTro5.chrX                      340025 19 + 155549662 CCATGAGCCCTCACATGCA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       87780 19 -    177848 CCATGAGCCCTCACGTGCA
i panPan2.chrUn_NW_014024190v1   C 0 I 147
s gorGor5.CYUI01015925v1            248440 19 +    417917 TCATGAGCCCTCACATGCA
i gorGor5.CYUI01015925v1         I 1 C 0
s nomLeu3.chrX_GL398042_1_random     27076 19 +     35312 TCATGAGCCCTCACGTGCA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=1506.000000
s hg38.chrX_KI270880v1_alt          176591 4 +    284869 aatg
s panTro5.chrX                      340044 4 + 155549662 AATG
i panTro5.chrX                   C 0 I 41
s gorGor5.CYUI01015925v1            248459 4 +    417917 AATG
i gorGor5.CYUI01015925v1         C 0 I 42
s nomLeu3.chrX_GL398042_1_random     27095 4 +     35312 GGTG
i nomLeu3.chrX_GL398042_1_random C 0 I 2
e manLeu1.NW_012108508v1            167380 490 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e chlSab2.chrUn_KE147541v1          170239 103 -    811265 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macNem1.NW_012017243v1            315018 349 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       87799 147 -    177848 I

a score=17522.000000
s hg38.chrX_KI270880v1_alt          176595 8 +    284869 cacatgca
s panTro5.chrX                      340089 8 + 155549662 CACATGCA
i panTro5.chrX                   I 41 C 0
s panPan2.chrUn_NW_014024190v1       87946 8 -    177848 CACATGCA
i panPan2.chrUn_NW_014024190v1   I 147 C 0
s gorGor5.CYUI01015925v1            248505 8 +    417917 CACATGCA
i gorGor5.CYUI01015925v1         I 42 C 0
s nomLeu3.chrX_GL398042_1_random     27101 8 +     35312 TTCACGCA
i nomLeu3.chrX_GL398042_1_random I 2 I 542
s macNem1.NW_012017243v1            315367 8 +  25972781 cacatgca
i macNem1.NW_012017243v1         I 349 C 0
s chlSab2.chrUn_KE147541v1          170342 8 -    811265 cacacgca
i chlSab2.chrUn_KE147541v1       I 103 C 0
s manLeu1.NW_012108508v1            167870 8 -    350446 cacatgca
i manLeu1.NW_012108508v1         I 490 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=95150.000000
s hg38.chrX_KI270880v1_alt          176603 52 +    284869 catacacgcacaa-tgcaaagcacaCACTCCTAGTTTtgtgcattcactgtgt
s panTro5.chrX                      340097 52 + 155549662 CATACAAGCACAA-TGCAAAGCACACACTCCTAGTTTTGTGCATTCACTGTGT
i panTro5.chrX                   C 0 I 2
s panPan2.chrUn_NW_014024190v1       87954 52 -    177848 CATACAAGCACAA-TGCAAAGCACACACTCCTAGTTTTGTGCATTCACTGTGT
i panPan2.chrUn_NW_014024190v1   C 0 I 2
s gorGor5.CYUI01015925v1            248513 53 +    417917 CATACACGCACAAGTGCAAAGCACACACTCCTAGTTTTGTGCATTCACTGTGT
i gorGor5.CYUI01015925v1         C 0 I 36
s macNem1.NW_012017243v1            315375 52 +  25972781 cacacatgcacaA-TGCAAAGCACACACTCCTAGTTTTGTGCATTCACtgtgt
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170350 52 -    811265 cacacatgcacaA-TGCAAAGCACACACTCCTAGTTTTGTGCATTCACtgtgt
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167878 52 -    350446 cacacacacacaa-tgcaAAGCACATACTCCTAGTTTTGTGCATTCACtgtgt
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27109 542 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=58155.000000
s hg38.chrX_KI270880v1_alt          176655 45 +    284869 --atgtgtgtctgcatgtgctcatgcgccctgatccatgtgtgactg
s panTro5.chrX                      340151 45 + 155549662 --GTGTGTGTCTGCATGTGCTCACGCGCCCTGATCTGTGTGTGACCG
i panTro5.chrX                   I 2 C 0
s panPan2.chrUn_NW_014024190v1       88008 45 -    177848 --GTGTGTGTCTGCATGTGCTCACGCGCCCTGATCCgtgtgtgaccg
i panPan2.chrUn_NW_014024190v1   I 2 C 0
s macNem1.NW_012017243v1            315427 47 +  25972781 atgtgtgtgtctgtgtgtgctcacgcgccctgatccgtgtgtgactg
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170402 47 -    811265 atgtgtgtgtctgtgtgtgctcacacgccctgatccgtgtgtgactg
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167930 47 -    350446 atgtgtgtgtctgtgtgtgctcatgcgccctgatccgtgtgtgactg
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27109 542 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e rheMac8.chr6                   143311618 489 + 180051392 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248566 36 +    417917 I

a score=1911.000000
s hg38.chrX_KI270880v1_alt          176700 1 +    284869 t
s panTro5.chrX                      340196 1 + 155549662 T
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88053 1 -    177848 t
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s rheMac8.chr6                   143312107 1 + 180051392 T
i rheMac8.chr6                   I 489 C 0
s macNem1.NW_012017243v1            315474 1 +  25972781 t
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170449 1 -    811265 t
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167977 1 -    350446 t
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27109 542 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            248566 36 +    417917 I

a score=72838.000000
s hg38.chrX_KI270880v1_alt          176701 40 +    284869 gtatgtgtgtgtctgtgtgtt-gtgcgcactgatctgtgtt
s panTro5.chrX                      340197 40 + 155549662 GTATGTGTGTGTCTGTGTGTT-GTGCACACTGATCTGTGTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88054 40 -    177848 gtatgtgtgtgtctgtgtgtt-gtgcacactgatctgtgtt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248602 38 +    417917 gtatgtgtgtgt-tgtgtgtt--tgcgcactgatctgtgtt
i gorGor5.CYUI01015925v1         I 36 C 0
s rheMac8.chr6                   143312108 41 + 180051392 GTACGTGTGTGTCTGTGTGCTTACACGCCCTGATCAGTGCT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315475 41 +  25972781 gtacgtgtgtgtctgtgtgCTTACACGCCCTGATCAGTGCT
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170450 41 -    811265 gtatatgtgtgtctgtgtgCTCACGCGCCCTGCTCAGTGCT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            167978 41 -    350446 gtatgtgtgtgtctgtgtgCTTACACGCCCTGATCAGTGCT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27109 542 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217277 336 -   1025902 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=28492.000000
s hg38.chrX_KI270880v1_alt          176741 9 +    284869 actgtttat
s panTro5.chrX                      340237 9 + 155549662 ACTGTTTAT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88094 9 -    177848 actgtttat
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248640 9 +    417917 actgtttat
i gorGor5.CYUI01015925v1         C 0 C 0
s rheMac8.chr6                   143312149 9 + 180051392 ACTGTTTAT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315516 9 +  25972781 ACTGTTTAT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            217613 9 -   1025902 ACTGTGTAT
i cerAty1.NW_012001098v1         I 336 C 0
s chlSab2.chrUn_KE147541v1          170491 9 -    811265 ACTGTTTAT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            168019 9 -    350446 ACTGTTTAT
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     27109 542 +     35312 I
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=383734.000000
s hg38.chrX_KI270880v1_alt          176750 124 +    284869 gtgtgtgagtctgCAGACACACACATACACAGTCGCACAGGGATCAGTGCGCATGAGTACAC----AGACACACACATACACAGTCACACACATGTGCA-CACACCCACAGGTAGAAACGTGCACCCAC
s panTro5.chrX                      340246 124 + 155549662 GTGTGTGAGTCTGCAGACACACACATACACGGTCACACACGGATCAGGGCGTGTGAGCACAC----AGACACACACATACACAGTCACACACATGTGCA-CACACCCACAGGTAGAAACGTGCACCCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88103 124 -    177848 gtgtgtgagtctgCAGACACACACATACACGGTCACACACGGATCAGGGCGTGTGAGCTCAC----AGACACACACATACACAGTCACACACATGTGCA-CACACCCACAGGTAGAAACGTGCACCCAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248649 119 +    417917 gtgtgtgagtctgCAGACACACACA------GTCACACACGGATCAGGGCGCGTGAGCACAC----AGACACACACATACACAGTCACACACATGTGCACCACACCCACAGGTAGAAACGTGCACCTAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27651 120 +     35312 GCACGTGAGCACACACAGACACACATACACAGACACACAAGGATCAGTGTGCATGAGCACACACAGACACACATACATACACAATCACACACA-GAGCA--GTGCACGTGAGCAGA------CACAGAC
i nomLeu3.chrX_GL398042_1_random I 542 C 0
s rheMac8.chr6                   143312158 122 + 180051392 ----GTGAGTCTGCAGACACACACATACACAGTCGCACAAGAATCGGGGCACGTGAGcacacac--agacacacacatacacagtcacacacatgtgca-cacgcccacaggtagaaacatacagccac
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315525 122 +  25972781 ----GTGAGTCTGCAGACACACACATACACAGTCGCACAAGAATCAGGGCGCGTGAGcacacac--agacacacacatacacagtcacacacatgtgca-cacgcccacaggtagaaacatacagccac
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            217622 126 -   1025902 GTGCGTGAGTCTGCAGACACACACATACACAGTCGCACAAGAATCAGGGCTTGTGAACACACAC--AGACACACACATACAGAGTCACACACATGTGCA-CATGCCCACAGGTAGAAACATACACCCAC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170500 122 -    811265 ----GTGAGTCTGCAGACACACACATACAGAGTCGCACATGAATCAGGGTGTGTGAGCGCACAC--AGACGCACACATACACAATCACACACATGTGCA-CACACCCACAGGTAGAAACATACACCCAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            168028 122 -    350446 ----GTGAGTCTGCAGACACACACATACACAGTCGCACAAGAATCAGGGCTTGTGAacacacac--agacacacacatacagagtcacacacatgtgca-catgcccacaggtagaaacatacacccac
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            319571 1149 +   1230721 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=133843.000000
s hg38.chrX_KI270880v1_alt          176874 35 +    284869 ACACATCTATTTTCATGGCA--ACAGTCACACACAGA
s panTro5.chrX                      340370 35 + 155549662 ACACATCTATTATCATGGTA--ACAGTCACACACAGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88227 35 -    177848 ACACATCTATTATCATGGTA--ACAGTCACACACAGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248768 35 +    417917 ACACATCTATTTTCATGGCA--ACAGTCACACACAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27771 19 +     35312 ACAC------------------ACAGACACACACGGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312280 35 + 180051392 acacGTCTATTTTCATGCCA--ACAGTCACACACAGA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315647 35 +  25972781 acacGTCTATTTTCATGCCA--ACAGTCACACACAGA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            217748 35 -   1025902 ACACGTCTATTTTCATGCCA--ACAGTCACACACAGA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170622 37 -    811265 ACACATCTATTTTCATGCCAACACAGTCACACACAGA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            168150 35 -    350446 acacGTCTATTTTCATGCCA--ACAGTCACACACAGA
i manLeu1.NW_012108508v1         C 0 M 4385
s colAng1.NW_012115411v1            318422 37 +   1230721 ACACATCTATTTTCATGCCAACACAGTCACACACAGA
i colAng1.NW_012115411v1         T 1149 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=30285.000000
s hg38.chrX_KI270880v1_alt          176909 7 +    284869 TCAGTGC
s panTro5.chrX                      340405 7 + 155549662 TCAGTGC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88262 7 -    177848 TCAGTGC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248803 7 +    417917 TCAGTGC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27790 7 +     35312 TCAGTGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312315 7 + 180051392 TCAGTGC
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315682 7 +  25972781 TCAGTGC
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            217783 7 -   1025902 TCAGTGC
i cerAty1.NW_012001098v1         C 0 I 264
s chlSab2.chrUn_KE147541v1          170659 7 -    811265 TCAGTGC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318459 7 +   1230721 TCAGTGC
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=16182.000000
s hg38.chrX_KI270880v1_alt          176916 8 +    284869 ATGTGAGT
s panTro5.chrX                      340412 8 + 155549662 ATGTGAGT
i panTro5.chrX                   C 0 I 362
s panPan2.chrUn_NW_014024190v1       88269 8 -    177848 ATGTGAGT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248810 8 +    417917 ATGTGAGT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27797 8 +     35312 ACGTGAGC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312322 6 + 180051392 --GTGAGG
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315689 6 +  25972781 --GTGAGG
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170666 6 -    811265 --GTGAGG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318466 6 +   1230721 --GTGAGG
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217790 264 -   1025902 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=1020.000000
s hg38.chrX_KI270880v1_alt          176924 2 +    284869 AT
s panPan2.chrUn_NW_014024190v1       88277 2 -    177848 AT
i panPan2.chrUn_NW_014024190v1   C 0 I 260
s gorGor5.CYUI01015925v1            248818 2 +    417917 AT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27805 2 +     35312 AC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312328 2 + 180051392 GT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315695 2 +  25972781 GT
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170672 2 -    811265 GT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318472 2 +   1230721 GG
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e panTro5.chrX                      340420 362 + 155549662 I
e cerAty1.NW_012001098v1            217790 264 -   1025902 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=15946.000000
s hg38.chrX_KI270880v1_alt          176926 6 +    284869 AGATAC
s panTro5.chrX                      340782 6 + 155549662 AGATAC
i panTro5.chrX                   I 362 C 0
s panPan2.chrUn_NW_014024190v1       88539 6 -    177848 AGATAC
i panPan2.chrUn_NW_014024190v1   I 260 C 0
s gorGor5.CYUI01015925v1            248820 6 +    417917 AGATAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27807 4 +     35312 --ACAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312330 6 + 180051392 agacac
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315697 6 +  25972781 agacac
i macNem1.NW_012017243v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170674 6 -    811265 AGACAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318474 6 +   1230721 AGACAC
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e cerAty1.NW_012001098v1            217790 264 -   1025902 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=115529.000000
s hg38.chrX_KI270880v1_alt          176932 32 +    284869 AGACTCACACACATACACAGACACACACGGAT
s panTro5.chrX                      340788 32 + 155549662 AGACTCACACACATACACAGACACACACGGAT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88545 32 -    177848 AGACTCACACACATACACAGACACACACGGAT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248826 32 +    417917 AGACTCACACACATACACAATCACACACGGAT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27811 28 +     35312 AG----ACACACATACACAGACACACAAGGAT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312336 32 + 180051392 agactcacacacatacacagtcacacacagat
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            315703 32 +  25972781 agactcacacacatacacagtcacacacagat
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            218054 32 -   1025902 AGACTCACACACATACACAGACACACACGGGT
i cerAty1.NW_012001098v1         I 264 I 198
s chlSab2.chrUn_KE147541v1          170680 32 -    811265 AGACTCACACACATACACAATCACACACGGAT
i chlSab2.chrUn_KE147541v1       C 0 I 152
s colAng1.NW_012115411v1            318480 32 +   1230721 AGACTCACACACACACACAGACACACACGGAT
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=8595.000000
s hg38.chrX_KI270880v1_alt          176964 2 +    284869 CA
s panTro5.chrX                      340820 2 + 155549662 CA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88577 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248858 2 +    417917 CA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     27839 2 +     35312 CA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312368 2 + 180051392 ca
i rheMac8.chr6                   C 0 I 105
s macNem1.NW_012017243v1            315735 2 +  25972781 ca
i macNem1.NW_012017243v1         C 0 I 105
s cerAty1.NW_012001098v1            218284 2 -   1025902 CA
i cerAty1.NW_012001098v1         I 198 C 0
s chlSab2.chrUn_KE147541v1          170864 2 -    811265 CA
i chlSab2.chrUn_KE147541v1       I 152 C 0
s colAng1.NW_012115411v1            318512 2 +   1230721 CA
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=51723.000000
s hg38.chrX_KI270880v1_alt          176966 24 +    284869 GTGCGCATGAGCACACACAGACTC
s panTro5.chrX                      340822 24 + 155549662 GTGCGCGTGAGCACACACAGACTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88579 24 -    177848 GTGCGCGTGAGCACACACAGACTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            248860 24 +    417917 GTGGCGTTGAGCAGATACAGACTC
i gorGor5.CYUI01015925v1         C 0 I 478
s nomLeu3.chrX_GL398042_1_random     27841 24 +     35312 GTGCACGTGAGCACACACAGACTC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            218286 24 -   1025902 GTGCACATGAGCACACACAGACTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170866 24 -    811265 GTGCACGTGAGCACACAGAGACTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318514 24 +   1230721 GTGCACGTGAGCACACACAGACTC
i colAng1.NW_012115411v1         C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e rheMac8.chr6                   143312370 105 + 180051392 I
e macNem1.NW_012017243v1            315737 105 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=299625.000000
s hg38.chrX_KI270880v1_alt          176990 138 +    284869 ACACACATTAACAGTCGCACAcagatcacct-gaggccaggagttggagaccagtctggccaacacggcaaaacctg---cctctacaaaaaatacaaaagttagccaggtgcgttggcgtgcacctgtcatcccagctact
s panTro5.chrX                      340846 138 + 155549662 ACACACATTAACAGTCGCACAcagatcacct-gaggccaggagttggagaccagtctggccaacacggcaaaacctg---cctctacaaaaaatacaaaagttagccgggcgcgttggcgtgcacctgtcatctcagctact
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88603 138 -    177848 ACACACATTAACAGTCGCACAcagatcacct-gaggccaggagttggagaccagtctggccaacacggcaaaacctg---cctctacaaaaaatacaaaagttagccgggcgcgttggcgtgcacctgtcatctcagctact
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249362 142 +    417917 ACACACATTAACAGTCGCACAcagatcacctcgaggtcgggagttggagacctgtctggccaacacggcaaaaacctcgccctctacaaaaaatacaaaagttagccgggcgcgttggcgtgcatctgtcatcccagctact
i gorGor5.CYUI01015925v1         I 478 C 0
s nomLeu3.chrX_GL398042_1_random     27865 138 +     35312 ACGCACATTAACAGTTGCACAcggatcacct-gaggccaggagttggatagcagtctggccaacacggcaaaacctg---cccctacaaaaaatataaaaattagctgggcacgttggcgtgcacctgtaaccccagctact
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            218310 138 -   1025902 ACACACATACACAGTCACACAcagatcagct-gaggcctggagttcgagaccagcctggccaacatggcaaaacctg---tctctactaaaaatacaaaaatgagccgggcgccttggcgtgtacctgtcaccccagctact
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          170890 138 -    811265 ACACACATACACAATCACACAcagatcacct-gaggcctggagttggagaccagcctggccaacatggcaaaacctg---tctctactaaaaatacaaaaatgagctgggcgccttggcgtgcacctgtcaccccagctact
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            318538 138 +   1230721 ACACACATACACAGTCAGACAcagatcacct-gaggcctggagttggagaccatcctggccaacatggcaaaacctg---tctctactaaaaatacaaaagtgagctgggcgccttggcgggcacccgtcatcccagctact
i colAng1.NW_012115411v1         C 0 I 5368
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e rheMac8.chr6                   143312370 105 + 180051392 I
e macNem1.NW_012017243v1            315737 105 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=84510.000000
s hg38.chrX_KI270880v1_alt          177128 52 +    284869 caggagg-ctgaa-acaggagaaacgcttgaacccaggaggtggaggttgcagt
s panTro5.chrX                      340984 52 + 155549662 caggagg-ctgaa-acaggagaaacgcttgaacccgggaggcggaggttgcagt
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88741 52 -    177848 caggagg-ctgaa-acaggagaaacgcttgaactcgggaggcggaggttgcagt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249504 54 +    417917 caggaggcctgaatacaggagaaacgcttgaacccaggaggcggaggttgcatt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28003 52 +     35312 caggagg-ctgaa-acaggagaatcgcttgaacccaggaggcagaggttgcaat
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            218448 52 -   1025902 cgggagg-ctgag-gcaggagaatcgcttgaacccgggaggcggaggttgtagt
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171028 52 -    811265 cgggagg-ctgag-gcaggagaatcgcttaaacccgggacgtggaggttgcagt
i chlSab2.chrUn_KE147541v1       C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e colAng1.NW_012115411v1            318676 5368 +   1230721 I
e rheMac8.chr6                   143312370 105 + 180051392 I
e macNem1.NW_012017243v1            315737 105 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=248256.000000
s hg38.chrX_KI270880v1_alt          177180 134 +    284869 gagctgagatcacaccactgcactcaagcctgggcgacaa-agcgagactccgtctcaaag-aaaaaaaaa------aagaaagaaaaagaaaaAAGGGACGCGCTGGGCAAGGG-GAAGTTGTTAGAAGCCCTGAGTCCCAC
s panTro5.chrX                      341036 132 + 155549662 gagctgagatcacaccactgcactccagcctgggtgacaa-agcgagactccgtctcaaag-aaaaaaaaa--------gaaagaaaaagaaaaaaGGGACGCGCTGGGCAAGGG-GAAGTTGTTAGAAGCCCTGAGTCCCAC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88793 132 -    177848 gagctgagatcacaccactgcactccagcctgggcgacaa-agcgagactccgtctcaaag-aaaaaaaaa--------gaaagaaaaagaaaaaaGGGACGCGCTGGGCAAGGG-GAAGTTGTTAGAAGCCCTGAGTCCCAC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249558 140 +    417917 gagctgagatcgcaccact-cactccagcctgggcgacaa-agcgagactccgtctcaaag-aagaaaaaaaaaagaaagaaaaaagaagaaaaaGACGGCGCTGCGGGCAAGGGAGGCTTTGTTAGAAGCCCTGAGTCCCAC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28055 130 +     35312 gggccgagatcacaccactgcactccagcctgggcgacaagagcgagactccgtctcaaag-gaaaaaaaa----------aagagaaaggaaaaaa-GACATGCTGGGCAAGGG-GAGGTTGTTAGAAGCCCTGAGTCCCAC
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            218500 122 -   1025902 gagccgagatcgcgccaccgcactccagcctgggcgacag-agcgagactctgtctcaaat-aaaaaaaaa------------------gaaaaaaaGGACGCGCCGGGCAGGGG-AAAGTCGTGAAAAGCCGTGAGTCCCAC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171080 123 -    811265 gagccgagatcacacctctgcactccagcctgggcgacag-agcgagactctgtctcaaataaaaaaaaaa------------------gaaaaaaaGGATGCGCCGGGCAGGGG-GAAGTCGTGAAAAGCCGTGAGTCCCAC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            324044 131 +   1230721 gagccgagatcgcgccaccgcactccagcctgggcgacag-agcgagactctgtctcaaataaaaaaagaa----------aaaaatacgaaaaaaGGGACACGCTGGGCAGGGG-GAAGTCGTGAAAAGCCGTGAGTCCCAC
i colAng1.NW_012115411v1         I 5368 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  252992 3531 +  11138919 I
e rheMac8.chr6                   143312370 105 + 180051392 I
e macNem1.NW_012017243v1            315737 105 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=52327.000000
s hg38.chrX_KI270880v1_alt          177314 23 +    284869 ACATGAGGGTCCTGACAACTTTT
s panTro5.chrX                      341168 23 + 155549662 ACATGAGGGTCCTGACAACTTTT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88925 23 -    177848 ACATGAGGGTCCTGACAACTTTT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249698 22 +    417917 ACATGA-GGTCCTGACAACTTTT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28185 23 +     35312 ACGTGAGGGTCCTGACAAATTTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s cerAty1.NW_012001098v1            218622 23 -   1025902 ACAGGAGGGTCCTGACACCTTAG
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171203 23 -    811265 ACAGGAGGGTCCTGACACCTTTG
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            324175 23 +   1230721 ACAGGAGGGTCCTGACACCTTTG
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  256523 23 +  11138919 ACACGTCGGCCCTGACAACTTGG
i otoGar3.GL873584               I 3531 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e rheMac8.chr6                   143312370 105 + 180051392 I
e macNem1.NW_012017243v1            315737 105 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=140024.000000
s hg38.chrX_KI270880v1_alt          177337 32 +    284869 CTTCGTGATTCCGTATTTTAAAAGTAAATCTC
s panTro5.chrX                      341191 32 + 155549662 CTTCGTGATTCTGTATTTTAAAAGTAAATCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88948 32 -    177848 CTTCGTGATTCCGTATTTTAAAAGTAAATCTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249720 32 +    417917 CTTCGTGATTCCGTATTTTAAAAGTAAATCTC
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28208 32 +     35312 CTTCATGATTCCATATTTTAAAAGCAAATCTT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312475 32 + 180051392 ctTCGTGATTCCATATTTTAAAAGCAAATCTC
i rheMac8.chr6                   I 105 C 0
s macNem1.NW_012017243v1            315842 32 +  25972781 ctTCGTGATTCCATATTTTAAAAGCAAATCTC
i macNem1.NW_012017243v1         I 105 C 0
s cerAty1.NW_012001098v1            218645 32 -   1025902 CTTCGTGATTCCATATTTTAAAAGCAAATCTC
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171226 32 -    811265 CTTGGTGATTCCATATTTTAAAAGCAAATCTC
i chlSab2.chrUn_KE147541v1       C 0 C 0
s colAng1.NW_012115411v1            324198 32 +   1230721 CTTCGTGATTCCATATTTTAAAAGCGAATCTC
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  256546 32 +  11138919 CTTAGTTCTTCCATCTTTTAAAGACAAATCTC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            168185 4385 -    350446 M
e saiBol1.JH378345                  225947 26281 -    465904 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=2133116.000000
s hg38.chrX_KI270880v1_alt          177369 481 +    284869 CTTTCTGGGAACTTTTAATACCATTTTGGTTACGCGTCTAATCCACCTGCTCCTTAACCAGAAATGGTAATCACGTGGAAATCACTG-CCAAACTA-TGATGTCCAATTAAAATTCAGGTTATTTTGTGGGA-GGCAAACGCACC------C----CCCAGCCTC----TCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTCGGGCTGTTTTGAGGGAGAGCTTGT-CATCAAGAGCCATCTGGC-TTCC-TCAGTCATGACAGATTAAAATAGGATACAGTATGAAAGCTTTG-------------------------CCA----CCCCTCC-AGGGGCGAAAGAAGTCACTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TTGCAGAGACGGGCTCTGAGAGGGACCCT-GGCACTCACCAACGGCAAAAAACTCATTTTCCAGAAGAGAGC--AGGCCCCGGCCGGCC----GGACATC-GATGGCCT--CGGAGCCACTCTGTCTCCTTTGGGGACGAAGGTGGGC-------
s panTro5.chrX                      341223 491 + 155549662 GTTTCTGGGAACTTTTAATACCGTTTTGGTTACGCGTCGAATCCACCTGCTCCTTAACCAGAAATGGTAATCACGTGGAAATCACTG-CCAAACTA-TGATGTCCAATTAAAATTCAGGTTATTTTGTGGGA-GGCAAACGCACC------C----CACAGCCTC----TCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTCGGGCTGTTTTGAGGGAGAGCTTGT-CATCAAGAGCCATCTGGC-TTCC-TCAGTCATGACAGATTAAAATAGGATACAGTATGAAAGGTTTGCCATTCAATTGCTAATGTCTCAAA-CCA----CCCCTCC-AGGGGTGTAAGAAGTCACTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TTGCAGAGACG-------------------GGCACTCACCAATGGCAAAAAACTCATTTTCCAGAAGAGAGC--AGGCCCCGGCCGGCCGGCAGGACGTC-GATGGCCT--CGGAGCCACTCTGTCTCCTTTGGGGACGAAGGTGGGC-------
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       88980 491 -    177848 GTTTCTGGGAACTTTTAATACTGTTTTGGTTACGCGTCGAATCCACCTGCTCCTTAACCAGAAATGGTAATCACGTGGAAATCACTG-CCAAACTA-TGATGTCCAATTAAAATTCAGGTTATTTTGTGGGA-GGCAAACGCACC------C----CACAGCCTC----TCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTCGGGCTGTTTTGAGGGAGAGCTTGT-CATCAAGAGCCATCTGGC-TTCC-TCAGTCATGACAGATTAAAATAGGATACAGTATGAAAGGTTTGCCATTCAATTGCTAATGTCTCAAA-CCA----CCCCTCC-AGGGGTGTAAGAAGTCACTGGGGGAAAGATGTAATT-AAAAGATCCCC-TTGCAGAGACG-------------------GGCACTCACCAACGGCAAAAAACTCATTTTCCAGAAGAGAGC--AGGCCCCGGCCGGCCGGCAGGACGTC-GATGGCCT--CGGAGCCACTCTGTCTCCTTTGGGGACGAAGGTGGGC-------
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            249752 512 +    417917 CTTTCTGGGAAC-TTTAATACCACTTTGGTTACGCGTCTAATCCACCTGCTCCTTTACCAGAAATGGTAATCACGTGGAAATCACTGCCCAAACTATTGATGTCCAATTAAAATTCAGGTTATTTTGTGGGA-GGCAAACGCGCC------C----CCCAGCCTC----TCTCTTTTTA----AACCGT-ATCTTACAAAT-CTC-TGATAGGAAAGTTTCGGGCTGTTTTCAGGGAGAGCTTGTCCATCAAAGACCATCTGGCTTTCC-TCAGTCATGACAGATT-AAATAGGATACAGTATGAAAGCTTTGCCATTCAATTGCTAATATCTCAAATCCA----CCCCTCCTAGGGGCGAAAGAAGTCACCTGGGGAAA-AGGTAATTAAAAAGATCCCCGTTGCAGAGATGGGCTCTGAGAGGACGCCTGGCCACTCACCAACGGCAAAAAACTCATTTTCCAGAAGAGAGC--AGGCCCCGGCCGGCT----GGACGTCGGATGGCCT--CGGAGCCACTCTGTCTCCTTTGGGGATGAAGGTGGGC-------
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28240 492 +     35312 GTTTCTGGGAACTTTTAATACCATTTTGGTTATGCGTCTAATCCACGTCCTCATTAACCAGAAATGGTAATCACGTCGAAATCACTG-CCAAAGTA-TGATGTCCAATTAAAATTCAGGTTATTTTGTGGGA-TGCAAATGCACC------C----CCCAGCCTC----TCTCTTTTTA----AACCGTCATCTTACAAATTCTCTTGATAGAAAG--TTTGGGCTGTTTTGAGGCAGAGCTTGT-CATCAGGAGCCATCTGGC-TTCC-TGAGTCATGACAGATTAAAATGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCAAA-CCT----CACCTCC-AGGGACGAAAGAAGTCACTGGGGGAAAGAGGTAATT-AAAACATCCCC-TCGCAGAGACCGGCTCCGAGTGGGACCCT-GGCACTCACCAACAGCAAAAAACTCATTTTCCAGAAGAGA---------------GGCT----GCATGTC-GACGGCAT--CAGAGCTGCCCTGTCTCCTTTGGGGACGAAGGTGGGC-------
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143312507 511 + 180051392 CTTTCTGAGAACTTTCCATGCCATTTTGCTTGTCTGTCTAATCCAC---CTCATTAAGCAGAAATGGTAATCGCGTCGAAATCACTG-ACAAACTA-TGATGTACGATTAAAATTCAGGCCATTTTCTGGGA-TGCAAACCCGCCCCCCCCC----CCCAGCCTCTGTGTCTCTTTTTA----AACCATCATCTTACAAATCCTC-TGATAGAAAG--TTTGCACCGTTTTGAGGCAGAGCTTGT-CATCGGGAACCATCTGGT-TTCC-AGAGACGTGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-AGCGGCAAAAGAAGTCATTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TCGCAGAGACGGGCCCTGAGCAGGACCCG-GGCACTCACCAACAGC--ACAACTCGTTTTCCAGAAGAGAGT--AGGCCGCGGCCGGCC----GGACGTC-CATGGCCTCGGAGAGCTGTTCTGTGTCCTTTGGGGACGACGGTGGGC-------
i rheMac8.chr6                   C 0 I 23
s macNem1.NW_012017243v1            315874 514 +  25972781 CTTTCTGAGAACTTTCCATGCCATTTTGCTTGTCTGTCTAATCCACCTTCTCATTAAGCAGAAATGGTAATCGCGTCGAAATCACTG-ACAAACTA-TGATGTACGATTAAAATTCAGGCCATTTTCTGGGA-TGCAAACCCGCCCCCCCTC----CCCAGCCTCTGTGTCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTTGCACCGTTTTGAGGCAGAGCTTGT-CATCGGGAACCATCTGGT-TTCC-GGAGACGTGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-AGCGGCGAAAGAAGTCATTGGGGGAAAGAAGTAATT-AAAAGTTCCCC-TCGCAGAGACGGGCCCTGAGCAGGACCCG-GGCACTCACCAACAGC--ACAACTCGTTTTCCAGAAGAGAGT--AGGCCGCGGCCGGCC----GGACGTC-CATGGCCTCGGAGAGCTGCTCTATGTTCTCTGGGGACGACGGTGGGC-------
i macNem1.NW_012017243v1         C 0 I 23
s cerAty1.NW_012001098v1            218677 515 -   1025902 CTTTCTGAGAACTTTCCATGTCATTTTGCTTGTCTGTCTAATCCACCTTCTCATTAAGCAGACATGGTAATCGCGTCGAAATCACTG-ACAAACTA-TGATGTACGATTAAAATTCAGGCCATTTTCTGGGA-TGCAAACCCGCCCCCCC-C----CCCAGCCTCTGTGTCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTTGCGCCGTTTTGAGGCAGAGCTTGT-CATCGGGAACCATCTGGT-TTCC-GGAGACGTGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-AGCGGCGAAAGAAGTCATTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TCGCAGAGACGAGCTCTGAGCAGGACCCG-GGCACTCACCAACAGC--ACAACTCCTTTTTCAGAAGAGAGTAGAGGCCGCGGCCGGCC----GGACGTC-CATGGCCTTGGAGAGCTGCTCTGTGTCCTTTGGGGACGACGGTGGGC-------
i cerAty1.NW_012001098v1         C 0 I 23
s chlSab2.chrUn_KE147541v1          171258 518 -    811265 CTTTCTGAGAACTTTCCATGCCATGTTGCTTGTCTGTCTAATCCACCTTCTCATTAAGCAGAAATGGTAATCGCGTCGAAATCACTG-ACAAACTA-TGATGTACGATTAAAATTCAGGCCATTTTCTGGGA-TGCAAACCCGCCCCCCC-CGCCGCCCCGCCTCTGTGTCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTTGCGCCGTTTTGAGGCAGAGCTTGT-CATCCGGAACCATCTGGC-TTCCGGGAGACGTGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-ATCGGCGAAAGAAGTCATTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TGGCAGAGACGGGCCCTGAGCGGGACCCG-GGTGCTCACCAACAGC--AAAACTCATTTTCCAGAAGAGAGT--AGGCCCCGGCCGGCC----GGACGTC-CATGGCCTGGGAGAGCTGCTCTGTCTCCTTTGGGGATGACAGTGGGC-------
i chlSab2.chrUn_KE147541v1       C 0 I 23
s manLeu1.NW_012108508v1            172570 511 -    350446 CTTTCTGAGAACTTTCCATGCCATTTTGCTTGTCTGTCTAATCCACCTTCTCATTAAGCAGAAATGGTAATCGCGTCGAAATCACTG-ACAAACTA-TGATGTACGATTAAAATTCAGGCCATTTTCTGGGA-TGCAAACCCGCCCACCC-C----CCCAGCCTCTGTGTCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTTGCGCCGTTTTGAGGCAGAGCTTGT-CATCGGGAACCATCTGGT-TTCC-GGAGACGTGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-AGCGGCAAAAGCAGTCATTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TTGCAGAGACGGGTCCTGAGCAGGACCCG-GGCACTCACCAACAGC--ACAACTCGTTTTCCAGAAGAGAGT--AGGCTGCGGCCGGCC----GGACGTC-CATGGCCT--CAGAGCCGCTCTGTGTCCTTTGGGGACAACGGTGGGC-------
i manLeu1.NW_012108508v1         M 4385 I 24
s colAng1.NW_012115411v1            324230 506 +   1230721 CTTTCTGAGAAGTTTCCATGCCATTTTGGTTATCTGTCTAATCCACCTTCTCATTAAGCAGAAATGGTAATCGCGTCGAAATCGCTG-AGAAACTA-TGATGTACAATTAAAATTCAGGCGATTTTCTGGGA-TGCCCACCCGCG------C----CCCAGCCTCTGTGTCTCTTTTTA----AACCGTCATCTTACAAATCCTC-TGATAGAAAG--TTTGCGCCGTTTTGAGGCAGAGCTTGT-CATCAGGAACCATCTGGC-TTCC-TGAGACGGGGAAGATTAAAACGGGATACAGTATGAAAGC-TTGCCATTCAATTGCTAATGTCTCCAA-CCA----CCACTCC-AGTGGCGAAAGAAGTCATTGGGGGAAAGAGGTAATT-AAAAGATCCCC-TCGCAGAGACGGGCCCTGGGCAGGACCCT-GGCACTCACCAACAGC--AAAACTCATTTTGCGGAAGAGAGC--AGGCCCCGGCCGGCC----GGACGTC-GATGGCCT--CAGAGCCGCTCTGTGTCCTTTGGGGACGACGTTGGGC-------
i colAng1.NW_012115411v1         C 0 I 23
s otoGar3.GL873584                  256578 512 +  11138919 GTTTCTGGGAACTTTCAATGCCATTTTAGTTATCTGTCTAATCCACCTGTCCATTTACCAGGAATGGCAATTAAGGGGAAATTACCG-CTCAACTG-TGACGTGCAATTAAAATTCAGGCTATTTTGGGGGATTGCAAACCTGCCCTGTC-C----tttaaatttttt-tttttttttattttaaCCATCCTCTTACAAATCCTC-TGATAGAAAG--TTTGCACTCTTTTGAGGCAGAGCTTGT-AATAATAAACCATCTGGC-CGAC-TTAAATGTGAAAGATTAAAGTGATATACAGTACGAAGGT-TCCCTATTCAATTGCTAATATCTGAAA-CCATGACTGACTTA-GGCGGTGACAGAAGTTATTGGCGGAAAGAGGTAATT-AAACCATCTCC-TCACAGAGACGGGCCCAGAGCAAGGGCT--GGCACTTGCCAAGAGC--AAAACTCATTTTACCAAAGAGAAC--GGGCT------GGCC------------GATGCCTC--TGGAGCTGATCTCTGCACTCCTGGGTTGGTTGCAGGGTGACAGG
i otoGar3.GL873584               C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=5355.000000
s hg38.chrX_KI270880v1_alt          177850 5 +    284869 TGGCT
s panTro5.chrX                      341714 5 + 155549662 TGGCT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89471 5 -    177848 TGGCT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250264 5 +    417917 TGGCT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28732 5 +     35312 CGGCT
i nomLeu3.chrX_GL398042_1_random C 0 I 9
s otoGar3.GL873584                  257090 5 +  11138919 TGACC
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            173081 24 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e chlSab2.chrUn_KE147541v1          171776 23 -    811265 I
e cerAty1.NW_012001098v1            219192 23 -   1025902 I
e colAng1.NW_012115411v1            324736 23 +   1230721 I
e rheMac8.chr6                   143313018 23 + 180051392 I
e macNem1.NW_012017243v1            316388 23 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=26401.000000
s hg38.chrX_KI270880v1_alt          177855 56 +    284869 CTCGTAA-CCCCTTAGCTTTGTC------TGGCCAG-CACCCTTGGCTTTGTCTGGCCAGCACC
s panTro5.chrX                      341719 56 + 155549662 CTCGTAG-CCCCTTAGCTTTGTC------TGGCCAG-CACCCTTGGCTTTGTCTGGCCAGCACC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89476 56 -    177848 CTCGTAG-CCCCTTAGCTTTGTC------TGGCCAG-CACCCTTGGCTTTGTCTGGCCAGCACC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250269 58 +    417917 CTCTTAGCCCCCTTAGCTTTGTC------TGGCCAGCCACCCTTGGCTTTGTCTGGCCAGCAAC
i gorGor5.CYUI01015925v1         C 0 C 0
s otoGar3.GL873584                  257095 57 +  11138919 CTTGTTGCACCCCTTGATTCATTGCAGGGTGACAGGTGACCACTGG-------GGACCAGCAGA
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            173081 24 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e nomLeu3.chrX_GL398042_1_random     28737  9 +     35312 I
e chlSab2.chrUn_KE147541v1          171776 23 -    811265 I
e cerAty1.NW_012001098v1            219192 23 -   1025902 I
e colAng1.NW_012115411v1            324736 23 +   1230721 I
e rheMac8.chr6                   143313018 23 + 180051392 I
e macNem1.NW_012017243v1            316388 23 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=-2089.000000
s hg38.chrX_KI270880v1_alt          177911 8 +    284869 -----CTTCTCTC
s panTro5.chrX                      341775 8 + 155549662 -----CTTCTCTC
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89532 8 -    177848 -----CTTCTCTC
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250327 4 +    417917 -----CTTC----
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28746 8 +     35312 -----CTGTCCTT
i nomLeu3.chrX_GL398042_1_random I 9 C 0
s otoGar3.GL873584                  257152 8 +  11138919 GGACACAA-----
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            173081 24 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e chlSab2.chrUn_KE147541v1          171776 23 -    811265 I
e cerAty1.NW_012001098v1            219192 23 -   1025902 I
e colAng1.NW_012115411v1            324736 23 +   1230721 I
e rheMac8.chr6                   143313018 23 + 180051392 I
e macNem1.NW_012017243v1            316388 23 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=-3033.000000
s hg38.chrX_KI270880v1_alt          177919 1 +    284869 -C
s panTro5.chrX                      341783 1 + 155549662 -C
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89540 1 -    177848 -C
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28754 1 +     35312 -T
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313041 1 + 180051392 -T
i rheMac8.chr6                   I 23 C 0
s macNem1.NW_012017243v1            316411 1 +  25972781 -T
i macNem1.NW_012017243v1         I 23 C 0
s cerAty1.NW_012001098v1            219215 1 -   1025902 -T
i cerAty1.NW_012001098v1         I 23 C 0
s chlSab2.chrUn_KE147541v1          171799 1 -    811265 -T
i chlSab2.chrUn_KE147541v1       I 23 C 0
s colAng1.NW_012115411v1            324759 1 +   1230721 -T
i colAng1.NW_012115411v1         I 23 C 0
s otoGar3.GL873584                  257160 1 +  11138919 A-
i otoGar3.GL873584               C 0 C 0
e manLeu1.NW_012108508v1            173081 24 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            250331 0 +    417917 C

a score=419829.000000
s hg38.chrX_KI270880v1_alt          177920 96 +    284869 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCATGGCCATCAAGCGGCCAGGACTTGATAGCCGT-GGAAATTGCACCTGA-TGAAATGGA----CGTAATGA
s panTro5.chrX                      341784 96 + 155549662 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCACGGCCCTCAAGCGGCCAGGACTTGATAGCCGT-GGAAATTGCACCTGA-TGAAATGGA----CGTAATGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89541 96 -    177848 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCACGGCCCTCAAGCGGCCAGGACTTGATAGCCGT-GGAAATTGCACCTGA-TGAAATGGA----CGTAATGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250331 82 +    417917 ----------------TCTCTCTT----CCTGTCCACGGCCATCAAGCGGCCAGGACTTGATAGCCGTGGGAAATTGCACCTGATTGAAACGGA----CGTAATGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28755 95 +     35312 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCACGGCCGTCAAGCCGCCAGGACTTGATCGCCGT--GAAATCGCGCCTGA-TGAAACGGA----CGTGATGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313042 96 + 180051392 GTCTGGCCAGCATCCTTCTCTCCT----CCTGTCCATGGCCATCGAGTGGCCAGGACTTGGTCGCCGT-GGAAATCACGCCCGA-TGAAACGGA----GGTAATGA
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            316412 96 +  25972781 GTCTGGCCAGCATCCTTCTCTCCT----CCTGTCCATGGCCATCGAGTGGCTGGGACTTGGTCGCCGT-GGAAATCACGCCCGA-TGAAACAGA----GGTAATGA
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            219216 96 -   1025902 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCATAGCCATCGAGTGGCCGGGACTTGGTCGCCGT-GGAAATCACGCCCGA-TGAAACGGA----GGTAATGA
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171800 96 -    811265 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCATGGCCATCGAGTGGCCGGGACTTGGTCGCCGT-GGAAATCAAGCCCGA-TGAAACGGA----GGTAATGA
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            173105 96 -    350446 GTCTGGCCAGCACCCTTCTCTCCT----CCTGTCCATGGCCATCGAGTGGCCAGGACTTGGTCGCCGT-GGAAATCACGCCCGA-TGAAACGGA----GGTAATGA
i manLeu1.NW_012108508v1         I 24 C 0
s colAng1.NW_012115411v1            324760 96 +   1230721 GTCTGGCCAGCACCCTTCTCTCCT----CCTATCCATGGCCATCGAGTGGCCGGAACTTGGTCGCCGT-GGAAATCACGCCCGA-TGATACGGA----GGTAATGA
i colAng1.NW_012115411v1         C 0 C 0
s otoGar3.GL873584                  257161 86 +  11138919 GCCTGGCG----------TCTCCTGTCGCATGTCCACATCCACCAAGTGGGCAGGCTT-------CTT-GGAGACCGCACC-AA-TGAAACAGACATTGGTAATGA
i otoGar3.GL873584               C 0 I 114
e saiBol1.JH378345                  225947 26281 -    465904 T
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=352774.000000
s hg38.chrX_KI270880v1_alt          178016  92 +    284869 GT-----------GTCATGAAGAAACAGGATTGTTTCT-CCCCAAAACAGGAGGTCGCAAGGATGTCTCG---ATTTTCAAAGCCTGCAAGG-AAAAAAGGTGACATT
s panTro5.chrX                      341880  92 + 155549662 GT-----------GTCATGAAGAAACAGGATTGTTTCT-CCCCAAAACAGGAGGTCGCAAGGATGTCTCA---ACTTTCAAAGCCTGCAAGG-CCAAAAGGTGACATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89637  92 -    177848 GT-----------GTCATGAAGAAACAGGATTGTTTCT-CCCCAAAACAGGAGGTCGCAAGGATGTCTCA---ACTTTCAAAGCCTGCAAGG-CCAAAAGGTGACATT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250413  93 +    417917 GT-----------GTCATGAAGAAAACAAATTGTTTCT-CCCCAAAACAGGAGGTCGCAAGGATGTCTCG---ATTTTCAAAGCCTGCAAGGAAAAAAAGGTGACATT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28850  91 +     35312 GT-----------GTCATGAAG-AACAGAATTGTTTCTCCCCCAAAATGGGAGGTCACAAGGATGTCTCG---ATTTTC-AAGCCTGCAAGG-AAAAAAGGTGACATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313138 106 + 180051392 GTGCAGACGACGTGTCACGAAGAAATAGCGCTGTTTCT-CCTCAAAACGGGAGGTCCCAAGGAAGTCTCGATAATTTTCAAAGCCTGCAAGG-AGAAAAGGCGATGTT
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            316508 105 +  25972781 GTGCAGACGACGTGTCACGAAGAAATAGCGCTGTTTCT-CCTCAAAAC-GGAGGTCCCAAGGAAGTCTCGATAATTTTCAAAGCCTGCAAGG-AGAAAAGGCGATGTT
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            219312 106 -   1025902 GTGCAGACGACATGTCACAAAGAAATAGCGCTGTTTCT-CCTCAAAACGGGAGGTCTCAAGGAAGTCTCGATAATTTTCAAAGCCTGCAAGG-AGAAAAGGTGATGTT
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          171896 106 -    811265 GTGCAGACGACGAGTCATGAAGAAACAGCACTGTTTCT-TCCCAAAACGGGAGGTCCCAAGGAAGTCTCGATAATTTTCAAAGCCTGCAATG-AAAAAACGTGATGTT
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            173201 106 -    350446 GTGCAGATGACGTGTCACGAAGAAATAGCGCTGTTTCT-CCTCAAAACGGGAGGTCCCGAGGAAGTCTCGATCATTTTCAAAGCCTGCAAGG-AGAAAAGGTGATGTT
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            324856 106 +   1230721 GTGCAGATGACGCGTCACGAAGAAATAGCACTGTTCCT-CCCCAAAACGGGAGGTCCCAAGGAAGTCTCGATAATTTTCAAAGCCTGCAAGG-AAAAAAGGTGACGTT
i colAng1.NW_012115411v1         C 0 I 29
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257247 114 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=85603.000000
s hg38.chrX_KI270880v1_alt          178108 43 +    284869 CCCCGTCGTGGG---ACATCCCCTCGCAAGGAGCCGACTCATGATT
s panTro5.chrX                      341972 43 + 155549662 CCCGGTCGTGGG---TCATCCCCTCGCAAGGAGCCGACTCATGATT
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89729 43 -    177848 CCCGGTCGTGGG---TCATCCCCTCGCAAGGAGCCGACTCATGATT
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250506 43 +    417917 CCCGGTCGTGGA---CATTCCCCTCGCAAGGAGCCGACTCATGATT
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28941 46 +     35312 CCCGGTCTTGGGTCATCATCCCCTCGCAAGGAGCCCACTCACGATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313244 29 + 180051392 -CCGGCCATGGG---TCATCCCCTCGCAATGAA-------------
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            316613 29 +  25972781 -CCGGCCATGGG---TCATCCCCTCGCAATGAA-------------
i macNem1.NW_012017243v1         C 0 C 0
s cerAty1.NW_012001098v1            219418 29 -   1025902 -CCGGTCGTGGG---TCATCCCCTCGCAATGAA-------------
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          172002 29 -    811265 -CCGGCCATGGG---TCATCCCTTCGCAATGAA-------------
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            173307 29 -    350446 -CCGGCCGTGGG---TCATCCCCTTGCAATGAA-------------
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257247 114 +  11138919 I
e colAng1.NW_012115411v1            324962 29 +   1230721 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=842899.000000
s hg38.chrX_KI270880v1_alt          178151 200 +    284869 CCCACCTAGATAGTAAATACCActcacgc--ctgtcatcccagagctttgggaggcggaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaatacggtgaaaccccgtctc-tactaaaaatac------a------------------------------------------------aaaattagctgggtgtggtggtgggtgcctgtaatcccagctactcgggaggccga--ggca--ggagaa
s panTro5.chrX                      342015 200 + 155549662 CCCACCTAGATAGTAAATACCActcacgc--ctgtcatcccagagctttgggaggccgaggcgggcggatcacgaggtcgggagatcgagaccatcctggctaacacggtgaaaccccgtctc-tactaaaaatac------a------------------------------------------------aaaattagctgggtgtgttggtgggtgcctgtaatcccagctactcgggaggccga--ggca--ggagaa
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89772 200 -    177848 CCCACCTAGATAGTAAATACCActcacgc--ctgtcatcccagagctttgggaggccgaggcgggcggatcacgaggtcgggagatcgagaccatcctggctaacacggtgaaaccccgtctc-tactaaaaatac------a------------------------------------------------aaaattagccgggcgtggtggtgggtgcctgtagtcccagctactcgggaggccga--ggca--ggagaa
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250549 201 +    417917 CCCACCTAGATAGTAAATACCActcacg---ctgtcatcccagagcttt-ggaggccgagg-aggcggatcacgaggtcaggacatcgagaccatcctggctaacacggtgaaaccccgtctcttactaacaatac------a------------------------------------------------aaaattagcgggacgtggtggtgggt-cctgtaatcccagctactcggagggccgatcggcatggagaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     28987 248 +     35312 CCCATCGAGATAGTAAATACCgctcacgc--ctgtcatcccagcactttgggaggccgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctc-tactaacaacac------aaaaaTCAGTGGgacccacagggtgaaaccccatctctactaaaagtacaaaattagctgggtgtggtggtgcacgcctgtaatctcagctactcgggaggccga--ggca--ggagaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313273 200 + 180051392 CCTACCAAGATAGTAAATACCActcacgc--ctgtcatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagattgagaccagcctgcctaacagggtgaaaccccgtgtc-tactaaaaatac------a------------------------------------------------aaaattagccggacgtggtagcgggcgcctgtcgtcccagctacttgggaggctga--ggca--ggggaa
i rheMac8.chr6                   C 0 C 0
s macNem1.NW_012017243v1            316642 200 +  25972781 CCTACCAAGATAGTAAATACCActcacgc--ctgtcatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccagcctggctaacagggtgaaaccccgtgtc-tactaaaaatac------a------------------------------------------------aaaattagccggacgtggtagcgggcgcctgtcgtcccagctacttgggaggctga--ggca--ggggaa
i macNem1.NW_012017243v1         C 0 I 5474
s cerAty1.NW_012001098v1            219447 206 -   1025902 CCTACCAAGATAGTAAATACCActcacgc--ctgtcatcccagcactttgggagtccgagacgggcaaatcacgaggtcaggagatcgagaccagcctggctaacacggtgaaaccccgtctc-tactaaaaatacaaaaaaa------------------------------------------------aaaattagccagacgtggtggcggccgcctgtcgtcccagctacttgggagactga--ggca--ggagac
i cerAty1.NW_012001098v1         C 0 C 0
s chlSab2.chrUn_KE147541v1          172031 200 -    811265 CCTACCAAGATAGTAAATACCgctcacgc--ctgtcatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccagcctggctaacacggtgaaaccccgtctc-tactaaaaatac------a------------------------------------------------aaaactagtcggaggtggtggcgggcgcctgtcgtcccagcttcttgggaggctga--ggca--ggagaa
i chlSab2.chrUn_KE147541v1       C 0 C 0
s manLeu1.NW_012108508v1            173336 206 -    350446 CCTACCAAGATAGTAAATACCActcacgc--ctgtcatcccagcactttgggaggccgagacgggcgaatcacgaggtcaggagatcgagactagcctggctaacacggtgaaaccccgtctc-tactaaaaatacaaaaaaa------------------------------------------------aaaattagccggacgtggtggcgggcgcctgtcgtcccagctacttgggaggctga--ggca--ggagaa
i manLeu1.NW_012108508v1         C 0 C 0
s colAng1.NW_012115411v1            324991 202 +   1230721 CCTACCAAGATAGTAAATACCActcatgcctctgtcatcccagtactttgggaggccgagacgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtaaaaccccgtccc-tactaaaaatac------a------------------------------------------------aaaattagccaggcatggtggcgggcgcctgtcgtcccagctactcgggaggctga--ggca--ggagaa
i colAng1.NW_012115411v1         I 29 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257247 114 +  11138919 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=306145.000000
s hg38.chrX_KI270880v1_alt          178351 90 +    284869 tcgcttgaacctgggaggtggacaatgcagtgagccgagatctcaccactgcactccagcctgggtgacagggcgagactccatctcaaa
s panTro5.chrX                      342215 84 + 155549662 tcgcttgaacctgggaggtggacgttgcagtgagctgatatcacaccactgcactccagcctgggtgacagggcgagactccgt------
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       89972 84 -    177848 tcgcttgaacctgggaggtggacgttgcagtgagctgatatcacaccactgcaattcagcctgggtgacagggcgagactccgt------
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250750 90 +    417917 tcgcttgaacctgggaggtggacgttgcagtgagccgagatcgcaccactgaactccagcctgggcgacagaacgagactccgtcccaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     29235 90 +     35312 tcgcttgaacctgggaggtggacgttgcagtgagccgagatcacgccactgcactccagcctgggcgacggggggagactccatctcaaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143313473 90 + 180051392 tcacttgaacccgggaggtgaaggctgcagtgagccgagattgcactactgcactccagcctgggcaacagagcgagactccgtctcaaa
i rheMac8.chr6                   C 0 I 3685
s cerAty1.NW_012001098v1            219653 90 -   1025902 tagcttgaacccaggaggcggaggctgcagtgagccgagatcgcactactgcactccagcctgggcgacagagcgagactccgtctcaaa
i cerAty1.NW_012001098v1         C 0 I 3711
s chlSab2.chrUn_KE147541v1          172231 90 -    811265 tcacttgaacccgggaggcggaggctgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaa
i chlSab2.chrUn_KE147541v1       C 0 I 3902
s manLeu1.NW_012108508v1            173542 90 -    350446 tcgcttgaacgcaggaggcggaggctgcagtgagccgagatcgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaa
i manLeu1.NW_012108508v1         C 0 I 3909
s colAng1.NW_012115411v1            325193 90 +   1230721 tcgcttgaacccaggaggcagaggctgcagtgagccgagatcgcaccacggcactccaacctgggcgacagagcgagactccatctcaaa
i colAng1.NW_012115411v1         C 0 I 13642
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257247 114 +  11138919 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=289.000000
s hg38.chrX_KI270880v1_alt          178441 7 +    284869 caaacaa
s gorGor5.CYUI01015925v1            250840 7 +    417917 aaccaaa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     29325 7 +     35312 caaacaa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257247 114 +  11138919 I
e panTro5.chrX                      342299 0 + 155549662 C
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e panPan2.chrUn_NW_014024190v1       90056 0 -    177848 C

a score=213516.000000
s hg38.chrX_KI270880v1_alt          178448 301 +    284869 aCCACTCTGGGGTCTGCGTG-TGCTGCCTGCGTAGGAAACACTTCCCCATTGTGAATGGGCACCTGTCACACCGTCCCGGTTACCGCTC-CGTAACT------GACAC---GAACGATGCCGGA-------GAGCTGGGAGCTGGGAGCTGGGTGCCCAGCC-TTGGAGGCGTGCTCCAAACCACACCTCCCTTTTGAGCTTGGCTGGT-ATGTAAACGATTGGAAGGATAGTTAATCAAGCAATTCCTCCATCTCACCTAAGTGAACCCAGAGATATTTATTTTCTCTCTCTA-TAAAGGTGTTCACTCCCCAACTG---------tttt
s panTro5.chrX                      342299 296 + 155549662 ----ctcTGGGGTCTGCGTG-TGCTGCCTGCGTAGGAAACACTTCCCCATTGTAAATGGGCACCTGTCACACCGTCCCGGTTACCGCTC-CGTAACT------GACAT---GAACGATgctggagagctgggagctgggagctgggagctgggTGCCCAGCC-TTGGAGACATACTCCAAACCACACCTCCCTTTTGAGCTTGGCTGG------------TTGGAAGGATAGTTAATCAAGCAATTCCTCCATCTCACCTAAGTGAACCCAGCGATATTTATTTTCTCTCTCTA-TAAAGGTGTTCAGTCCCCAACTG------ttttttt
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       90056 304 -    177848 ----ctcTGGGGTCTGCGTG-TGCTGCCTGCGTAGGAAACACTTCCCCATTGTAAATGGGCACCTGTCACACCGTCCCGGTTACCGCTC-CGTAACT------GACAC---GAACGATgctggagagctgggagctgggagctgggagctgggTGCCCAGCC-TTGGAGACATACTCCAAACCACACCTCCCTTTTGAGCTTGGCTGGT-ATGTAAACGATTGGAAGGATAGTTAATCAAGCAATTCCTCCATCTCACCTAAGTGAACCCAGCGATATTTATTTTCTCTCTCTA-TAAAGGTGTTCAGTCCCCAACTG---------tttt
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            250847 307 +    417917 aCCACTCT-GGGTCTGCGTG-TGCTGCCTGCATA-GAAACACTTCCCCATTGTAAATGGGCACCTGTCACACTGTCCTGGTTACCGCTCTCATAAAT------GACAC---GAACGATgctggagagctgggagctgggagctgggagctgggTGCCCAGCCTTTGGAGACATGCTCCAAACCACACCTCCCTTTTGAGCTTGGCTGGTAATGTAAACGA-TGGAAGAATAGTTAATCAAGCAATT-CTCCATCTCACCTAAGTGAACCCAGAGATATTTATTTTCTCTCTCTATTAAAGGTGTTCAGTCCCCAACTG----------ttt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     29332 255 +     35312 aTCACCCTGGGGTCTGCGTACTGCTGCCTGCGTAGGAAACACTTCCCCATTGCCCATGGGCACCTGTCACACTGTCCCGGTTACCGTTC-CGTCACT------GACACAGAGAAGGATGCT--------------TGGGAGCTGGGAGCT-----------------------------------------------------GCTGGT-ATGTCAACGATTGGAAGGATAGTTAATCAAGCAATTCCTCCATCTCGCCTAAGTGAACCCAGAGATATTTATTTTCTGTCTCTA-TAAAGGTGTTCAGTCCCCCACTGTTTTTtttttttt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s otoGar3.GL873584                  257361 268 +  11138919 ACCACGCCAGGGGCTGCATGGGGCTGTGTGCGGTGTGGATGCTTTCCA-----GAGTGGGTGTGTCACACATAATTCCAGTCACTGCAC-CATGACCCAGGTGCAGAC---AGACCATGCC--------------------CTGGG-GCTGGGTACCCAGAC-------ACGGCTTGGAAAACGTGGTTGGCTTTTGACCATGG-TGGT-GCAGAAACTACCTGAGTAACA--------------TCCTCCGTCCCACCTGTGTGAACCCAGATGCACTTATCGCTTCTCTCCA-CAGAGATGATCAGTTCCCTGCCA---------CTTT
i otoGar3.GL873584               I 114 I 3530
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=288441.000000
s hg38.chrX_KI270880v1_alt          178749 424 +    284869 tttttcttaaaatgcagatggga-tcttgctacgtggcacaggctggtc-tcaaactcctgggcttaagagatcatctcaccttggcct-cccaagtagctgg-aactgcag-gggcacg-ccaccacacctggcTAatatgtatatattttatatattacatacatat----tatatatgaca---catattatatatactac-agat-------------------atatatgt-t----------------atattacatacataatataccatatacattatattgcatatataatatacattata-ctacacataatatgtaatatattacatatataaaatataaaatatataatgtac---acatacataacttacatatcac----------------atatataacacat--atataatatgcaatataatat-acatgtaatatctaa-------tatatgtaatatatgcaatattt-atatacatgtaatata
s panTro5.chrX                      342595 452 + 155549662 tttttcttaaaatgcaggtggga-tcttgctatgtggcacaggctggtc-tcgaactcctgggcttaagagatcttctcaccttggcct-cccaagtagctgg-aactgcag-gggcacg-ccaccacacctggcTAatatatatatattttatatattacatacatat----tgtatatgaca---catattatatatactac-atatataatatat---------catatatgt-t----------------atattacatacataatataccatatacattatattac--atataatacacattata-ctacacataatatgtaatatattacatatataaaatataaaatatataatgtac---acatacataacttacatatcacatatataacacat--tatatataacacat--atataatatgcaatataatat-acatgtaatatctaatatatattatatgtaatatatgcaatatgt--tatatatgtaatata
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       90360 454 -    177848 tttttcttagaatgcaggtggga-tcttgctatgtggcacaggctggtc-tcgaactcctgggcttaagagatcttctcaccttggcct-cccaagtagctgg-aactgcag-gggcacg-ccaccacacctggcTAatatatatatattttatatattacatacatat----tatatatgaca---catattatatatactac-acatataatatat---------catatatgt-t----------------atattacatacataatataccatatacattatattac--atataatacacattata-ctacacataatatgtaatatattacatatataaaatataaaatatataatgtac---acatacataacttacatatcacatatataacacat--tatatataacacat--atataatatgcaatataatat-acatgtaatatctaatatatattatatgtaatatatgcaatatgttatatacatgtaatata
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            251154 453 +    417917 tttttcttaaaatgcagatgggattcttgctatgtggcacaggctggtcttcaaactcctgggcttaagagatcttctcaccttggcctccccaagtagctggaaactgcagcgggcacgcccaccacacctggcTAatatatatatattttatatattacatgcatat----tatatattaca---catattatatatactac-atat-------------------atatcagtat----------------atattacatacatatgataccatatatattacataat--ata-actatac-ttatacctacacataatatgtaatatattacatatataaaatataaaatatataatgtacacaacatacataacttacatatcacatatataacacattatatatataacacactaatataatatgcaatataatataacatgtaatatcta-----tattatatgtaatatatgcaatatgttatatacatgtaatata
i gorGor5.CYUI01015925v1         C 0 I 4078
s nomLeu3.chrX_GL398042_1_random     29587 451 +     35312 tttttcttaaaatgcaggtggga-tcttgctatgtggcacaggctagtc-tcaaactcctgggcttaagacatcctctcaccttggcct-cccaagtagctgg-aactgcag-gtgcacg-ccaccacacctggcTAatatatgtatattttatatattacatatatatgtaatatgtatgatatattatattacatatatagtaatatataatatattatattacacatatataa-tatatcacacatattatatattacatatataatatatcatatttattatactac--atataatatac---gta-ttacatataatatgtaatatatcacac-------atataaaatatgtaatgtacacaacatacataacatata-atcacatatataa-------catatataacacat---------atgtaacataatag-acatgtaata--taatatatattatatgtaata--------------tatacatgtaatata
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I

a score=30071.000000
s hg38.chrX_KI270880v1_alt          179173 101 +    284869 tgcaatata-tattttcatattatat---ttttatatataaacctatatttata-at-atatataaacctatat-ttatatataatatataa-acctatatttatat-ta
s panTro5.chrX                      343047 104 + 155549662 tgcaatata-tattttcatattatat---ttttatatataaacctatatttatatataatatataaacctatat-ttatatataatatataa-acctatatttatatata
i panTro5.chrX                   C 0 I 124
s panPan2.chrUn_NW_014024190v1       90814 101 -    177848 tgcaatata-tattttcatattatat---ttttatatataaacctatatttata-at-atatataaacctatat-ttatatataatatataa-atctatatttatat-ta
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     30038  95 +     35312 --taatatgttatacatatattacatgtatcttgtatat-------tatatata-at-atat---aacatgtatattatatatgatatataacatgtata-ctatatgta
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            251607 4078 +    417917 I

a score=10893.000000
s hg38.chrX_KI270880v1_alt          179274 43 +    284869 atatataaacatat---ttatatat-atttttatattatatataaac
s panTro5.chrX                      343275 45 + 155549662 atatataaacatatat-ttatatat-atttttatattatatataaac
i panTro5.chrX                   I 124 C 0
s panPan2.chrUn_NW_014024190v1       90915 41 -    177848 atatataaacatat---t--tatat-atttttatattatatataaac
i panPan2.chrUn_NW_014024190v1   C 0 M 3139
s nomLeu3.chrX_GL398042_1_random     30133 42 +     35312 atatac-aacatgtatattatatataacatgtatattgtatgt----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            251607 4078 +    417917 I

a score=4517.000000
s hg38.chrX_KI270880v1_alt          179317 29 +    284869 ctacaaatatatatt-tatat-atatatata
s panTro5.chrX                      343320 29 + 155549662 ctacaaatatatatt-tatat-atatatata
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     30175 26 +     35312 -----aatatatattatatataacatgtata
i nomLeu3.chrX_GL398042_1_random C 0 I 3969
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e macFas5.chrUn_KE146020             51782 13760 -     71016 I
e gorGor5.CYUI01015925v1            251607 4078 +    417917 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=28256.000000
s hg38.chrX_KI270880v1_alt          179346 126 +    284869 t------ttttttcaga----------tggagactccctc-tgtcacccaggctggagtgcaatggcgtggtcttggttcactgcaacctccacctcccaggttagagattttATATATAAAAAATATATAGCTGGAACTGca
s panTro5.chrX                      343349 132 + 155549662 tatatttttttttcaga----------tggagactccctc-tgtcacccaggctggagtgcaatggtgtggtcttgattcactgcaacctccacctcccaggttagagattttATATATAAAAAATATATAGCTGGAACTGca
i panTro5.chrX                   C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34170  88 +     35312 ------ttttcttttga----------tggagttttgctcttgtcgcccaggctggagtgcaggggcacaatctcggctcactgcaagctccacctcccgggtt---------------------------------------
i nomLeu3.chrX_GL398042_1_random I 3969 C 0
s macFas5.chrUn_KE146020             65542  97 -     71016 ------ttttttttggagaaggggtctcggagtctcgctc-tgtcgcccaggctggagtgcagtggtgcaatatccgcttactgcaacctctgcctcccgggtt---------------------------------------
i macFas5.chrUn_KE146020         I 13760 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e gorGor5.CYUI01015925v1            251607 4078 +    417917 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=123592.000000
s hg38.chrX_KI270880v1_alt          179472 201 +    284869 ggttcgagtgattctcttgcctcagcctccccagtagctgggattacaggcgcccg-ccaccacgcccaactcatttttgtatttttagtagaga-tggggtttcaccatgttggccaggctgg---------------tctcg----------------aactcctgacctcaggggatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcc
s panTro5.chrX                      343481 201 + 155549662 ggttcgagtgattctcttgcttcagcctacccagtagctgggattacaggcatgtg-ccaccacgcccaactcatttttgtatttttagtagaga-tggggtttcaccatgttggccaggctgg---------------tctcg----------------aactcctgacctcaggggatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagcctccgtgcc
i panTro5.chrX                   C 0 I 13
s gorGor5.CYUI01015925v1            255685 203 +    417917 ggttcaagcgattctcctacctcaccctcccgagtagctgggattacaggcacctgcccaccatgcccaactcattttttgtattttagtagagattggggttttgccatgttggccaggctgg---------------tctcg----------------aactcctgatctcaggggatccacccgcctcagcctcccaaagtgctgggatgacaggcgtgagcctccgtgcc
i gorGor5.CYUI01015925v1         I 4078 C 0
s nomLeu3.chrX_GL398042_1_random     34258 197 +     35312 ----cacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccg-ccaccacgcctggctcatttttgtatttttagtagaga-tggggttttaccatgttggccatgctgg---------------tcttg----------------aacccgtgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgtc
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             65639 226 -     71016 ----caagtgattctcctgcctcagcctcccgagtaactgggatgacagatgcctg-ccaccaaacccagctaatttttgcatcttt--ttgata-cagcgtcttgctgtgttgcccaggctggagtgcagtggcacgatcttggctcactgcaacttccacctcccgggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggcacctgccaccaggcc
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=3460.000000
s hg38.chrX_KI270880v1_alt          179673 15 +    284869 cagccCAAAGTGATT
s gorGor5.CYUI01015925v1            255888 15 +    417917 cagccCAAAGTGATT
i gorGor5.CYUI01015925v1         C 0 I 5
s nomLeu3.chrX_GL398042_1_random     34455 15 +     35312 tggccCGAAGTGATT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             65865  9 -     71016 tggc------TAAtt
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e panTro5.chrX                      343682 13 + 155549662 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=6712.000000
s hg38.chrX_KI270880v1_alt          179688 18 +    284869 TTTTTTTTAACTGTCTCT
s panTro5.chrX                      343695 18 + 155549662 CTTTTTAAAACCATCTCT
i panTro5.chrX                   I 13 C 0
s gorGor5.CYUI01015925v1            255908 18 +    417917 TTTTTTTAAACTGTCTCT
i gorGor5.CYUI01015925v1         I 5 C 0
s nomLeu3.chrX_GL398042_1_random     34470 18 +     35312 TTTTTTTTTAACATCTCT
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             65874 13 -     71016 ttcttttt-----tcttt
i macFas5.chrUn_KE146020         C 0 I 330
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=18262.000000
s hg38.chrX_KI270880v1_alt          179706 33 +    284869 GCCAGCAGACAACCGTTTTAGAGAAATTCGGtg
s panTro5.chrX                      343713 33 + 155549662 GCCAGCAGACAACCGTTTTAGAGAAATTCAGTT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            255926 32 +    417917 GCCAGCAGACAACTG-TTTAGACAAATTCGGtt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34488 29 +     35312 ACCAGCAGACAACCGTTTTAAAGAAAttc----
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             66217 33 -     71016 GCCTACAGACCACCGTTTTAGAGCAATTCCATT
i macFas5.chrUn_KE146020         I 330 T 363
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=1332.000000
s hg38.chrX_KI270880v1_alt          179739 2 +    284869 tt
s panTro5.chrX                      343746 2 + 155549662 TT
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            255958 2 +    417917 tt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34517 2 +     35312 tt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s macFas5.chrUn_KE146020             65887 2 -     71016 tc
i macFas5.chrUn_KE146020         T 363 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143313563 3685 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=6825.000000
s hg38.chrX_KI270880v1_alt          179741 5 +    284869 ttttt
s panTro5.chrX                      343748 5 + 155549662 TTTTT
i panTro5.chrX                   C 0 I 16378
s gorGor5.CYUI01015925v1            255960 5 +    417917 ttttt
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34519 5 +     35312 ttttt
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317248 5 + 180051392 ttttt
i rheMac8.chr6                   I 3685 C 0
s macFas5.chrUn_KE146020             65889 5 -     71016 ttttt
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=17425.000000
s hg38.chrX_KI270880v1_alt          179746 38 +    284869 gtttttttgttttttttgatggagtttcgctcttgttg
s gorGor5.CYUI01015925v1            255965 23 +    417917 ttt---------------atggagttttgctcttgtca
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34524 38 +     35312 ttttttttttttttttggatggagttttgctcttgttg
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317253 37 + 180051392 tttttttttttttttgagatggagtcttgctc-tgtca
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             65894 37 -     71016 tttttttttttttttgagatggagtcttgctc-tgtca
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            173632 3909 -    350446 I
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e panTro5.chrX                      343753 16378 + 155549662 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            219743 3711 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=187945.000000
s hg38.chrX_KI270880v1_alt          179784 108 +    284869 cccaggctggagtgcagtggtgagatctcggttcactgcaacctccgcctcccgggttcaggcgattctcctgcctcagcctcccgagtagctggaattacaggcgcc
s gorGor5.CYUI01015925v1            255988 107 +    417917 cccaggctggagtgcaatggcacaatctcg-ctcactgcaacctccgcctcccgggttcaagcgattctcctaccttagcctcccgagtagctgggattacaggcacc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34562 108 +     35312 cccaggctggagtgcaatggcgcaatctcagctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgcc
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317290 108 + 180051392 cccaggctggagtgcagtggtgcgatctcagctcactacaacctccacctcttgggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcacc
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             65931 108 -     71016 cccaggctggagtgcagtggtgcgatctcagctcactacaacctccacctcttgggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcacc
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223454 108 -   1025902 cccaggctggagtgcagtggtgcaatctcagctcactacaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggatcagaggtacc
i cerAty1.NW_012001098v1         I 3711 C 0
s manLeu1.NW_012108508v1            177541 108 -    350446 cccaggctggagtgcagtggtgcgatctcagctcagtacaacctccgcctcccgggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcacc
i manLeu1.NW_012108508v1         I 3909 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e panTro5.chrX                      343753 16378 + 155549662 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=148728.000000
s hg38.chrX_KI270880v1_alt          179892 73 +    284869 cgccaccacgcctggctca--tttttgt-atttttagtagagacggggtttcaccatgttggccaggatggtctgg-
s panTro5.chrX                      360131 75 + 155549662 cgccaccacgcccaactta--tttttgttatttttagtagagatggggtttcaccatgttggccaggctggtctcgc
i panTro5.chrX                   I 16378 C 0
s gorGor5.CYUI01015925v1            256095 73 +    417917 tgccaccacgcccaactca--tttttgt-atttttagtagagatggggttttgccatgttggtcaggctggtctcg-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34670 73 +     35312 cgccaccacgcctggctca--tttttgt-acttttagtagagacggggtttcaccatgttggtcaggctggtctcg-
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317398 75 + 180051392 cgccaccacgcccggctaatatttttgt-atttttagtagagacggggtttcaccacgttggccaggatggtctcg-
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66039 75 -     71016 cgccactatgcccggctaatatttttgt-atttttagtagagacggggtttcaccacgttggccaggatcgtctcg-
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223562 75 -   1025902 taccaccacagctggctaatttttttgt-atttttagtagagacggggtttcaccatgttggccaggctggtctcg-
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            177649 72 -    350446 tgccaccgcgcccagtta---tttttgt-atttttagtagagacggggtttcaccatgttggccaggctggtctcg-
i manLeu1.NW_012108508v1         C 0 C 0
e saiBol1.JH378345                  225947 26281 -    465904 T
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=1820.000000
s hg38.chrX_KI270880v1_alt          179965 2 +    284869 ag
s panTro5.chrX                      360206 2 + 155549662 aa
i panTro5.chrX                   C 0 C 0
s gorGor5.CYUI01015925v1            256168 2 +    417917 aa
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34743 2 +     35312 aa
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317473 2 + 180051392 at
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66114 2 -     71016 at
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223637 2 -   1025902 at
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            177721 2 -    350446 at
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  243588 2 +    465904 aa
i saiBol1.JH378345               I 3784 C 0
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I
e panPan2.chrUn_NW_014024190v1       90956 3139 -    177848 M

a score=184822.000000
s hg38.chrX_KI270880v1_alt          179967 72 +    284869 ctcctggc-ctca-ggggatccacccg-cctcggcctccc-aaagtgctgggat-gacaggc--atgagccaccatgcg
s panTro5.chrX                      360208 77 + 155549662 ctcctgacgctcatggggatccacgc--cctcagcctccccaaagtgctggaattaacaggtctgtgagcctccgtgcc
i panTro5.chrX                   C 0 T 16603
s panPan2.chrUn_NW_014024190v1       94124 73 -    177848 ctcctgac-ctca-ggggatccacccgccctcagcctccc-aaagtgctgggat-tacaggc--gtgagcctccgtgcc
i panPan2.chrUn_NW_014024190v1   M 3139 C 0
s gorGor5.CYUI01015925v1            256170 72 +    417917 cccctgac-ctca-ggggatccacccg-cctcagcctccc-aaagtgctgggat-gacaggc--gtgagcctccgtgcc
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34745 72 +     35312 cccctgac-ctcg-ggtgatccacccg-cctcagcctccc-aaagtgctgggat-tacaggt--gtgagccaccacacc
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317475 70 + 180051392 ctcctgac-ctca---taatccgcctg-ccccggcctccc-aaagtgctgggat-gacaggc--gtgagccaccgcgcc
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66116 70 -     71016 ctcctgac-ctca---taatccgcctg-ccccggcctccc-aaagtgctgggat-gacaggc--gtgagccaccgcgcc
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223639 70 -   1025902 ctcctgac-ctcg---tgatccgccca-cctcggcctccc-aaagtgcagggat-gacaggc--ttgagccaccgcgcc
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            177723 70 -    350446 ctcctgac-ctcg---tgatccgcccg-tctcggcctccc-aaagtgcagggat-gacaggc--gtgagccaccgcgcc
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  243590 58 +    465904 ctcctgac-ctca-gacgatccatgca-----------cc----gtgttgggat-gacagg---gtgagcccccgcgtc
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=84640.000000
s hg38.chrX_KI270880v1_alt          180039 38 +    284869 cagccCAAAGTGA-CTTTTTTTAACCGTCTCTGCCAGCA
s panTro5.chrX                      343682 38 + 155549662 cggccCAAAGTGA-CTTTTTAAAACCATCTCTGCCAGCA
i panTro5.chrX                   T 16603 C 0
s panPan2.chrUn_NW_014024190v1       94197 38 -    177848 cggccCAAAGTGA-CTTTTTAAAACCATCTCTGCCAGCA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            256242 38 +    417917 cagccCAAAGTGA-CTTTTTTTAACCGTCTCTGCCAGCA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34817 38 +     35312 cagccCCATTTGCTTTTTTTTAAACCGTCTCTGTGA-CA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317545 38 + 180051392 cggccCCATTTGC-TTTTTTTTAACCATCTCTGCCTACA
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66186 38 -     71016 cggccCCATTTGC-TTTTTTTTAACCATCTCTGCCTACA
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223709 38 -   1025902 cggccTCATTTGC-TTTTTTTTAACCATCTGTGCCGACA
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            177793 37 -    350446 cggccCCCTTTGC--TTTTTTTAACCATCTCTGCCGACA
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  243648 37 +    465904 cggccCCG-TTAC-CCCCTTTTAACCGTGTGTGCCGACA
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  257629 3530 +  11138919 I
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=1403119.000000
s hg38.chrX_KI270880v1_alt          180077 495 +    284869 GAC-AACCGTTTTAGAGAAATTCAG----TTTTTTTA--AATTTTTTTT-----------GAGCGCGTTACA-TTCCTGAGCTGCTGTCTGGGGCTGTCAAAGCCACGTTGCTCACCTGACCA-GGTAAGTC-TTGGCTTGGACT-------------GTTTCCCAGGACAAATAACAGGTG-----------TTTTCTCCCATTCCCTGCCCTGAGACATGGGAGTGTCTTTGCTGGAATTATAGCAACTGTGAGCCTCTTCCTGGCCGTCCTGTCGCCTTGGAGTCTTAAGGGAAGGCGCACACGTTATCACAAAGCATATGCATTTGCCCCTGGGCCCCAGAGG--TGCTGGATTATGGGGGTACAGGGAAAAGTCTGTC----CACACCCCAGTCTTCTGGGATCCATAGGCCAGGGAGAA-ATCCTCCTTCTGTCTCCGAGAGTCTGAC----AGAGACAGCATGTCATTATCTTAACAGCTGTAAATCCCAATTATTTC-TGAGGCAGAAAATGCACTCTAAAATATGCATGCTTATTTaaaaaaa
s panTro5.chrX                      343720 495 + 155549662 GAC-AACCGTTTTAGAGAAATTCAG----TTTTTTTTTTAATTTTTTTT-----------GAGTGCGTTACA-TTCCTGAGCTGCTGTCTGGGGCTGTCAAAGCCACGTTGCTCACCTGACCA-GGTAAGTC-TTGGCTTGGACT-------------GTTTCCCAGGACAAATAACAGGTG-----------TTTTCTCCCATTCCCTGCCCTGAGACATGGGCGTGTCTTTGCTGGAATTATAGCAACTGTGAGCCTCTTCCTGGCCGTCCTGTCGCCTTGGAGTCTTAAGGGAAGGCGGACACGTTATCACAAAGCAT--GCGTTTGCCCCTGGGCCCCAGACG--TGCTGGATTATGGGGATACAGGGAAAAGTCTGTC----CACACCCCGGTCTTCTGGGATCCACAGGCCGGGGAGAA-ATCCTCCTTCTGTCTCCAAGAGTCTGAG----AGAGACAGCATGTCATTATCTTAACAGCTGTAAATCCCAATTATTTC-TGAGGCAGACAATCCACTCTAAAATATGCATGCTTATTTAAAAAAA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       94235 495 -    177848 GAC-AACCGTTTTAGAGAAATTCAG----GGTTTTTTTAAATTTTTTTT-----------GAGTGCGTTACA-TTCCTGAGCTGCTGTCTGGGGCTGTCAAAGCCATGTTGCTCACCTGACCA-GGTAAGTC-TTGGCTTGGACT-------------GTTTCCCAGGACAAATAACAGGTG-----------TTTTCTCCCATTCCCTGCCGTGAGACATGGGAGTGTCTTTGCTGGAATTATAGCAACTGTGAGCCTCTTCCTGGCCGTCCTGTCGCCTTGGAGTCTTAAGGGAAGGCGGACACGTTATCACAAAGCAT--GCGTTTGCCCCTGGGCCCCAGACG--TGCTGGATTATGGGGATACAGGGAAAAGTCTGTC----CACACCCCGGTCTTCTGGGATCCACAGGCCGGGGAGAA-ATCCTCCTTCTGTCTCCAAGAGTCTGAG----AGAGACAGCATGTCATTATCTTAACAGCTGTAAATCCCAATTATTTC-TGAGGCAGACAATCCACTCTAAAATATGCATGCTTATTTAAAAAAA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            256280 491 +    417917 GACAAACTGTTTTAGAGAAA-TCAG----TTTTTTT---AATTTTTTTT-----------GAGCGTGTTACA-TTCCTGAGCTGCTGTCT-GGGCTGTCAAAGCCACGTTGCTCACCTGACCAGGGTAAGTC-TTGGCTCCGACT-------------GTTTCCCAGGACAAATAACAGGTG-----------TTTTCTCCCATTCCCTGCCCTGAGACATGGGAGTGTCTTTGCTGGAATTATAGCAACTGTGAGCCTCTTCCTGGCCGTCCTGTCGCCTTGGAGTCTTAAGGGAAGGCGCACACGTTATCACAAAGCAT--GCATTTGCCCCTGGGCCCCAGAGG--TGCCGGATTATGGGGATTCAGGGAAAAGTCTGTC----CACACCCCAGTCTTCTGGGATCCATAGGCCAGGGAGAA-ATCCTCCTTCTGTCTCCAAGAGTCTGAC----AGAGAGAGCATGTCATTATCTTAACAGCTGTAAATCCCAATTATTTC-TGAGGCAGACAATCCACTCTAAAATATGCATGCTTATTT-AAAAAA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     34855 436 +     35312 GAC-AACTGTTTTAGAGAAATTCAGttgttttttttttttttttttttt-----------GAGTGTGTTACA-GTCCTGAGCTGGTGTCTGGGGCTATCAAAGCCACGTTGCTCACCTGACCA-GGTAAGTC-TTGGTTTGGACT-------------GTTTTCCAGGAGAAATAACAGCTG-----------TTTTGTCCTATTCCCTGCCCTGAGAC--------------------ATTATAGCAACTGTGAGCCTCTTCCTGGCCCTCCT-------------------------------------------GCAT--GCATTTGCCCTTGGGCCCCAGAGG--TGCTGGATTATGGGGATACAGGGAAAAGTCTGTC----CACACGCCGGTCCTCTGGGATCCACAGGCCAGGGAGAA-ATTCTCCTTCTGTCTCCAAGAGTCTGAC----AGAGAGAACATCTCATTATCTTAACAGTTGTAAATCCCAATTATTTC-TGAGGCAGAAAATCCACTCTAAAATATGCATGGTTATTTAAAAAAA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143317583 493 + 180051392 GAC-CACCGTTTTAGAGCAATTCCA----TTTTTTT------TTTCCTT-----------GGGTGCGTTACA-GTCCTGAGCTGGTGTCTGGGACTCTGAAACCCACACGATTCACCTGACCA-GGCGAGTCTTTGGCTTGGACC-------------GTTTTCCGGGACAAATAACAGAGG-----------TTTTATCCCGTTCCCTGCCCTGAGACGTGGGAGCGTCTTTGTTGGAATCGGAGCAACTGTCAGCCTGTTCCTGGCCCTCCTGTGGCCTTGCGGTCTTTAGGGGAGGCACAGACATCATCACAAGGCGT--GCATTTGCCCCTGGGCCCCAGAGG--TGCTGGATTATGGGGATAAAGGGAAAAGTCTGTC----CACACCCTCGTCTTCTGGGATCCGCGGGCCGGAGAGAACGCCCTGCTACTGTCTCCCACAGTCTGAC--AGAGAGAGAGCATCTCATTACCTTAACAGCTGTAAACCCCAATTAGTTC-TGAGGCAGAAAATCCACTCTCAAATATGCATGCTTATTTaaaaaaa
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66224 495 -     71016 GAC-CACCGTTTTAGAGCAATTCCA----TTTTTTT------TTTCCTT-----------GGGTGCGTTACA-GTCCTGAGCTGGTGTCTGGGACTCTGAAACCCACATGATTCACCTGACCA-GGTGAATCTTTGGCTTGGACC-------------GTTTTCCGGGACAAATAACAGAGG-----------TTTTATCCCGTTCCCTGCCCTGAGACGTGGGAGCGTCTTTGTTGGAATCGGAGCAACTGTCAGCCTGTTCCTGGCCCTCCTGTGGCCTTGCGGTCTTTAGGGGAGGCACAGACATCATCACAAGGCAT--GCATTTGCCCCTGGGCCCCAGAGG--TGCTGGATTATGGGGATAAAGGGAAAAGTCTGTC----CACACCCTCGTCTTCTGGGATCCGCGGGCCGGGGAGAACGCCCTGCTTCTGTCTCCCACAGTCTGACAGAGAGAGAGAGCATCTCATTACCTTAACAGCTGTAAACCCCAATTAGTTC-TGAGGCAGAAAATCCACTCTCAAATATGCATGCTTATTTaaaaaaa
i macFas5.chrUn_KE146020         C 0 C 0
s cerAty1.NW_012001098v1            223747 459 -   1025902 GAC-AACCGTTTTAGAGCAATTCCA----TTTTTTT------TTTTCTT-----------GAGTGTGTTACA-GTCCTGAGCTGGTGTCT-------------------------------------GAGTCTTTGGCTTGGACC-------------GTTTTCCGGGACAAATAACAGAGG-----------TTTTTTCCCGTTCCCTGCCCTGAGACGTAGGAGCGTCTTTGTTGGAATCGGAGCAACTGTCAGCCTGTTCCTGGCCCTCCTGTGGCCTTGCGGTCTTTAGGGGAGGCACAGACCTCATCACAAGGCAT--GCATTTGCCCCTGGGCCCCAGAGG--TGCTGGATTATGGGGATAAAGGGAAAAGTCTGTC----CACACCCTCGTCGTCTGGGATCCGCGGGCCGGGGAGAACTCCCTCCTTCTGTCTCCCACAGTCTGACAGAGAGAGAGAGCATCTCATTACCTTAACAGCTGTAAACCCCAATTATTTC-TGAGGCAGAAAATCCACTCTCAAATATGCATGCTTATTTaaaaaaa
i cerAty1.NW_012001098v1         C 0 I 20
s manLeu1.NW_012108508v1            177830 461 -    350446 GAC-AACCGTTTTAGAGCAATTCCATT--TTTTTTT------TTTTCTT-----------GAGTGTGTTACA-GTCCTGAGCTGGTGTCT-------------------------------------GAGTCTTTGGCTTGGACC-------------GTTTTCCGGGACAAATAACAGAGG-----------TTTTATCCCGTTCCCTGTCCTGAGACGTGGGAGCGTCTTTGTTGGAATCGGAGCAACTGTCAGCCTGTTCCTGGCCCTCCTGTGGCCTTGCGGTCTTTAGGGGAGGCACAGACATCATCACAAGGCAT--ACATTTGCCCCTGGGCCCCAGAGG--TGCTGGATTATGGGGATAAAGGGAAAAGTCTGTC----CACACCCTCGTCGTCTGGGATCCGCGGGCCGGGGAGAACTCCCTCCTTCTGTCTCCCACAGTCTGACACAGAGAGGGAGCATCTCATTACCTTAACAGCTGTAAACCCCAATTATTTC-TGAGGCAGAAAATCCACTCTCAAATATGCATGCTTATTTaaaaaaa
i manLeu1.NW_012108508v1         C 0 I 19
s saiBol1.JH378345                  243685 483 +    465904 CAG-AAACGTTTTAGATATATTCATTTGCttttttttttttttttttttttttttttGCAGAGTGTGTCACAGGCCCCGGGCTGGGGTCTGGAGCTGTGCACCCCACGCCG-TCACCTGTCCT-GGTGACTCTGTGACTCGGA-----------------------GTCGGAGTAACAGGCC-----------TTTGCTTCCAGGCCCGGCCTCGGGACATGGAAATGTGTTTCCTGGAAATGAA---------------------TCCGTCCTGTGGCCTTTGACGCTTCAGGACAGACGCTGGGCTTACCACAAAGCGT--GGGGCTGGCCGTGGTCCCCAGAGA--TGCCGGATTATGCGGATACAGGCAAAAGCCTGTCCCCACCCACCCTGCTCTTCAGGGACCGTCGGGCCAGGGAGAA-ATCCTCCTTCGGTCTCCCGGAGCCTGGC----GGAGAAAGCATCTCATTATGTTAACAGCTGTAAATCCCAATTACTTT-GGCGGCAGAAAATCCGGTCTAAAATATGCATGCttattaaaaaaa-
i saiBol1.JH378345               C 0 C 0
s otoGar3.GL873584                  261159 471 +  11138919 GAC-AACCACGTTACAGAAACTCAA----TTTGTTT--------TCTAG-----------AGGAACTTCATG-GCACTGGGCTTGTGCCTGTGTCCATACAAATGCCACAG-TTGCCTGTCCA-GGTGACATGTGGGGTCGGATTCCACCTGTGTGGGCTGTTGCAGGGTGATGGGGGGGTGGGGTGTGTGACTCATCCCCTCTGCCTTTCCTTAAAGCATGAGGATGTCTTTGGTGGCATGTGGGTGAC----AGCCTG-----AGACTTGGTGAGGACTCAGAGTCACAGAGTAGGGCTCAGGAGGTGTCCCCAAACAC--GCGGGTGCACCTGCACCCAGGTGGTCTGCCAGATTCCGAGCAGGGAGGG-CAGGTGAGTT----CCCAGCCTGCCCTTCTGGGGTATCCAGGC----------GTCC-------------------CTGAC----ACAGACAG--TCTCATTATCTTAACAGCTATACATTCCAATTATTTCTTTAGGCAGAAAATCCGCTCTAAAATATGCATG---GTTTAAAAAAA
i otoGar3.GL873584               I 3530 C 0
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=781.000000
s hg38.chrX_KI270880v1_alt          180572 1 +    284869 g
s panTro5.chrX                      344215 1 + 155549662 G
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       94730 1 -    177848 G
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            256771 1 +    417917 G
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     35291 1 +     35312 G
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143318076 1 + 180051392 a
i rheMac8.chr6                   C 0 C 0
s macFas5.chrUn_KE146020             66719 1 -     71016 a
i macFas5.chrUn_KE146020         C 0 C 0
e manLeu1.NW_012108508v1            178291 19 -    350446 I
e saiBol1.JH378345                  244168 0 +    465904 C
e otoGar3.GL873584                  261630 0 +  11138919 C
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e cerAty1.NW_012001098v1            224206 20 -   1025902 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=21497.000000
s hg38.chrX_KI270880v1_alt          180573 7 +    284869 agaaaga
s panTro5.chrX                      344216 7 + 155549662 AGAAAGA
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       94731 7 -    177848 AGAAAGA
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            256772 7 +    417917 AGAAAGA
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     35292 7 +     35312 AGAGAGA
i nomLeu3.chrX_GL398042_1_random C 0 C 0
s rheMac8.chr6                   143318077 7 + 180051392 aaaaaga
i rheMac8.chr6                   C 0 I 63
s macFas5.chrUn_KE146020             66720 7 -     71016 aaaaaga
i macFas5.chrUn_KE146020         C 0 I 18
s cerAty1.NW_012001098v1            224226 7 -   1025902 agaaaaa
i cerAty1.NW_012001098v1         I 20 C 0
s manLeu1.NW_012108508v1            178310 7 -    350446 agaaaaa
i manLeu1.NW_012108508v1         I 19 C 0
s saiBol1.JH378345                  244168 5 +    465904 --aaaaa
i saiBol1.JH378345               C 0 C 0
e otoGar3.GL873584                  261630 0 +  11138919 C
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=21462.000000
s hg38.chrX_KI270880v1_alt          180580 9 +    284869 aaaaaaaaa-
s panTro5.chrX                      344223 9 + 155549662 AAAGAAAAA-
i panTro5.chrX                   C 0 C 0
s panPan2.chrUn_NW_014024190v1       94738 9 -    177848 AAAGAAAAA-
i panPan2.chrUn_NW_014024190v1   C 0 C 0
s gorGor5.CYUI01015925v1            256779 9 +    417917 AAAAAAAAA-
i gorGor5.CYUI01015925v1         C 0 C 0
s nomLeu3.chrX_GL398042_1_random     35299 9 +     35312 GAAAAAAAA-
i nomLeu3.chrX_GL398042_1_random C 0 N 0
s macFas5.chrUn_KE146020             66745 9 -     71016 aaaaaaaaa-
i macFas5.chrUn_KE146020         I 18 C 0
s cerAty1.NW_012001098v1            224233 9 -   1025902 aaaaaaaaa-
i cerAty1.NW_012001098v1         C 0 C 0
s manLeu1.NW_012108508v1            178317 9 -    350446 aaaaaaaaa-
i manLeu1.NW_012108508v1         C 0 C 0
s saiBol1.JH378345                  244173 8 +    465904 -aaaaaGAA-
i saiBol1.JH378345               C 0 I 1
s otoGar3.GL873584                  261630 4 +  11138919 ------AAAT
i otoGar3.GL873584               C 0 C 0
e chlSab2.chrUn_KE147541v1          172321 3902 -    811265 I
e colAng1.NW_012115411v1            325283 13642 +   1230721 I
e rheMac8.chr6                   143318084 63 + 180051392 I
e macNem1.NW_012017243v1            316842 5474 +  25972781 I

a score=53547.000000
s hg38.chrX_KI270880v1_alt        180589 37 +    284869 CCCTCAAAGATT----GCAGTCGTGTTGCTATAATTTAGAG
s panTro5.chrX                    344232 37 + 155549662 CCCTCAAAGATT----GCAGTCGTGTTGCTATAATTTAGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     94747 37 -    177848 CCCTCAAAGATT----GCAGTCGTGTTGCTATAATTTAGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          256788 36 +    417917 CCCTC-AAGATT----GCAGTCTTGTTGCTATAATTTAGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           66754 36 -     71016 aGCTCAAAGCTT----GCCATCCTGTGGGTATAATTTACA-
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          224242 36 -   1025902 aGCTCAAAGCTT----GCCATCCTGTGGGTATAATTTACA-
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          178326 36 -    350446 aGCTCAAAGCTT----GCCATCCTGTGGGTATAATTTACA-
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                244182 40 +    465904 ACCTCAAAGCGTCCCCTCCGTCACATCGGCATCATTTAGA-
i saiBol1.JH378345             I 1 C 0
s otoGar3.GL873584                261634 36 +  11138919 CTCTCAAAGCTT----CCCATAGTTTGGGTGTAATTTAGA-
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318084 63 + 180051392 I
e macNem1.NW_012017243v1          316842 5474 +  25972781 I

a score=144921.000000
s hg38.chrX_KI270880v1_alt        180626 62 +    284869 CCCTAAACCTCAGAACCTCCGGAT-GAGTCTTCGGCTTGATATTGTGAGAC--CGGCTCTTTCAA
s panTro5.chrX                    344269 62 + 155549662 CCCTAAACCTCAGATCCTCCGGAT-GGGTCTTCGGCTTGATATTGTGAGAC--CGGCTCTTTCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     94784 62 -    177848 CCCTAAACCTCAGATCCTCCGGAT-GGGTCTTCGGCTTGATATTGTGAGAC--CGGCTCTTTCAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          256824 62 +    417917 CCCTAAACCTCAGAACCTCCGGAT-AGGTCTTCGGCTTGATATTGTGAGAC--TGGCTCTTTCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318147 62 + 180051392 CCCCAAACCTCAGAACCTCAGGAC-GACTGTGAGGCTGGATATTGTGAGAC--CGGCTCTTTCAA
i rheMac8.chr6                 I 63 I 55
s macFas5.chrUn_KE146020           66790 62 -     71016 CCCCAAACCTCAGAACCTCAGGAC-GACTGTGAGGCTGGATATTGTGAGAC--CGGCTCTTTCAA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          224278 62 -   1025902 CCCCAAACCTCAGAACCTCAGGAC-GACTGTGAGGCTGGATATTGTGAGAC--CGGCTCTTTCAA
i cerAty1.NW_012001098v1       C 0 I 55
s manLeu1.NW_012108508v1          178362 62 -    350446 CCCCAAACCTCAGAACCTCCGGAC-GGCTGTGAGGCTGGATATTGTGAGAC--CGGCTCTTTCAA
i manLeu1.NW_012108508v1       C 0 I 55
s saiBol1.JH378345                244222 65 +    465904 CCCCGATCCTAAGAAGCTGGGGCCTGAGTCTCGTCTCTGGCACGGCGAGACTGTGTCTCTTTCAA
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                261670 54 +  11138919 CCCCAAACCTAAGCGTTGCTCAAT-CA--------CTGGCATTTCCGACAG--TGGCTCTCCTGA
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e macNem1.NW_012017243v1          316842 5474 +  25972781 I

a score=40210.000000
s hg38.chrX_KI270880v1_alt        180688 54 +    284869 TCTTGGAGGGATATCTCAGCAAATGCT--CCTCTTCCCG-----------------TTCTCTGCAAGT-GGGGG
s panTro5.chrX                    344331 54 + 155549662 TCTTGGAGGGACATTTCTGCAAAGGCT--CCTCTTCCCG-----------------TTCTCTGCAACT-GGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     94846 54 -    177848 TCTTGCAGGGACATTTCTGCAAAGGCT--CCTCTTCCCG-----------------TTCTCTGCAACT-GGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          256886 55 +    417917 TCTTGGAGGGATATTTCTGCAAAGGCT--CCTCTTCCCG-----------------TTCTCTGCAACTGGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           66852 53 -     71016 ---AGCCGGGTCATGGCAGCAAATGTTCACATCCTCCCG-----------------TTCCCGGCAAAC-GGAGA
i macFas5.chrUn_KE146020       C 0 I 2
s saiBol1.JH378345                244287 71 +    465904 GCTCCGAGGGTAATTTCTGCAAATGCC--CATATTCTGGTGTGTGTGTGTTTTTTTTTTTTTGCAACC-GGGGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                261724 51 +  11138919 GCTTGGAGGGTAATTTCAGGAA--TCT--CCGTCTCCCC-----------------TTCCTTGCGGGT-TGGG-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178424 55 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224340 55 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318209 55 + 180051392 I
e macNem1.NW_012017243v1          316842 5474 +  25972781 I

a score=352434.000000
s hg38.chrX_KI270880v1_alt        180742 113 +    284869 GAAACCGCCGCTGA-CCCACGGGGTGACACGCAGCTGAATCATTCCAAAGGGAACCGGGGG-CCGGATTGATCTGCGTTGGTCGCTAACGAAGGCTC--GTAGGCAAAGCTCAGCG-A
s panTro5.chrX                    344385 115 + 155549662 GAAACCGCCGCTGA-CCCACGGGGTGACACGCAGCTGAATCATTCCAGAGGGAACCGGGGG-CCGGATTGATCTGCGTTGATCGCTAACGAAGGCTCTCGTAGGCAAAGCTCCGCG-A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     94900 115 -    177848 GAAACCGCCGCTGA-CCCACGGGGTGACACACAGCTGAATCATTCCAGAGGGAACCGGGGG-CCGGATTGATCTGCGTTGATTGCTAACGAAGGCTCTGGTAGGCAAAGCTCAGCG-A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          256941 113 +    417917 GAAACCGCCCCTGA-CCCACGGGGTGACACACAGCTGAATCATTCCAAAGGGAACC-GGGG-CCGGATTGATCTGCGTTGGTCGCTAATGAAGGCTC--GTATGCAAAGCTGGGCGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318264 116 + 180051392 GAAACCGCCCGTGA-CCCACGGGGTGACACGCGGCTGAATCGTTCCAAAGGCAACCGGGGGCCCGGATGGTTCTGCGTCGGGCGCTAATGAAGGCTTGTATATGCAAAGCTCAGCG-A
i rheMac8.chr6                 I 55 I 2
s macFas5.chrUn_KE146020           66907 116 -     71016 GAAACCGCCCGTGA-CCCACGGGGTGACACGCGGCTGAATCGTTCCAAAGGCAACCGGGGGCCCGGATGGTTCTGCGTCGGGCGCTAATGAAGGCTTGTATATGCAAAGCTCAGCG-A
i macFas5.chrUn_KE146020       I 2 I 2
s macNem1.NW_012017243v1          322316 116 +  25972781 GAAACCGCCCGTGA-CCCACGGGGTGACACGCGGCTGAATCGTTCCAAAGGCAACCGGGGGCCCGGATGGTTCTGCGTCGGTCGCTAATGAAGGCTTGTATATGCAAAGCTCAGCG-A
i macNem1.NW_012017243v1       I 5474 I 2
s cerAty1.NW_012001098v1          224395 116 -   1025902 GAAACCGCCCGTGA-CCCACGGGGTGACACGCGGCTGAATCGTTCCAAAGGCAACCAGGGGCCCGGATGGTTGTGCGTCGCTCGCTAATGAAGGCTTGTATATGCAAAGCTCAGCG-A
i cerAty1.NW_012001098v1       I 55 I 304
s manLeu1.NW_012108508v1          178479 116 -    350446 GAAACCGCCCGTGA-CCCACGGGGTGACACGCGGCTGAATCGTTCCAAAGGCAACCGGGGGCCCGGATGGTTCTGCGTCGCTCGCTAATGAAGGCTTGTATATGCAAAGCTCAGCG-A
i manLeu1.NW_012108508v1       I 55 I 5836
s saiBol1.JH378345                244358  97 +    465904 --ACCCGCCCCTGACCCCGCGGGGTGACACACAGCTGAATCCTTGCAAA---------------GGATTGATGTA-GCCGATGGCTAATGAAGGGTT--CTATGCAAACGTCGCTG-A
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                261775  99 +  11138919 -AAGCCGCCTCTGA-CCCACCCCGACTC-CGGGGCTGAATT-CTCCAAAGGCAGCGGAGGG-CGGGACGGAT----------CGCTAATGAAGGCA---GCACGTAGAGCGCCCTG-C
i otoGar3.GL873584             C 0 C 0
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I

a score=103373.000000
s hg38.chrX_KI270880v1_alt        180855 58 +    284869 -AGTGGGCTC------GGCGGACACAGGGT--GGGCTCGGGGCCCCGGGGCCGGGCCTGCTGGTGGA
s panTro5.chrX                    344500 58 + 155549662 -AGTGGGCTT------GGCGGACACGGGGT--GGGCTCCGGGCCCCGGGGCCGGGCCTGCTGGTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95015 58 -    177848 -AGTGGGCTC------GGCGGACACGGGGT--GGGCTCCGGGCCCCGGGGCCGGGCCTGCTGGTGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257054 58 +    417917 -AGTGGGCTC------GGCGGACACAGGGT--GGGCTCCGGGCCCCGGGGCCGGGCCTGCTGGTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318382 59 + 180051392 -AGCGGGCTCGG----GGCGGATCCAGGGT--GGGCTCC-AGCCCCAGGGCCGGGCTGGCTGGTGGA
i rheMac8.chr6                 I 2 C 0
s macFas5.chrUn_KE146020           67025 59 -     71016 -AGCGGGCTCGG----GGCGGACCCAGGGT--GGGCTCC-AGCCCCAGGGCCGGGCTGGCTGGTGGA
i macFas5.chrUn_KE146020       I 2 C 0
s macNem1.NW_012017243v1          322434 59 +  25972781 -AGCAGGCTCGG----GGCGGACCCAGGGT--GGGCTCC-AGCCCCAGGGCCGGGCTGGCTGGTGGA
i macNem1.NW_012017243v1       I 2 I 937
s saiBol1.JH378345                244455 62 +    465904 -AAGGGACCCTGTCTCGGGGACGCCGGGGC--GGGGTCC-AGCTTC-GGGCCGGGCCTGTGAGCTGA
i saiBol1.JH378345             C 0 I 6
s otoGar3.GL873584                261874 58 +  11138919 AGACGGGC--------GGGGAAGCCGGGCCAAGGGCTTC-GGCTCTGGGGCCAGGCTCGCCAAGTTT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224511 304 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt        180913 1 +    284869 G
s panTro5.chrX                    344558 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95073 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257112 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318441 1 + 180051392 G
i rheMac8.chr6                 C 0 I 232
s macFas5.chrUn_KE146020           67084 1 -     71016 G
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                244523 1 +    465904 G
i saiBol1.JH378345             I 6 I 1
s otoGar3.GL873584                261932 1 +  11138919 G
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224511 304 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=23654.000000
s hg38.chrX_KI270880v1_alt        180914 22 +    284869 GCTGGGGATGTCTTTTTGATTT
s panTro5.chrX                    344559 22 + 155549662 GCTGGCGACGTCTTTTTGATTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95074 22 -    177848 GCTGGCGATGTCTTTTTGATTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257113 22 +    417917 GCTGGGGACGTCTTTTTGATTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67085 21 -     71016 -ATGGGAGCATCTGTTTGATTT
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                244525 22 +    465904 TGGGGGGGGGTCCCTTTGATTT
i saiBol1.JH378345             I 1 I 43
s otoGar3.GL873584                261933 22 +  11138919 GCTTTGGGCGTCCCTTTGATTG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224511 304 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318442 232 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=116326.000000
s hg38.chrX_KI270880v1_alt        180936 153 +    284869 TGTCGTT-AGGAAGCCGTACCGTAGTCTCTCCGAGGCGTTGGGTG-----AAA--TTCACAGATTTCATC-TTCCGTGAACTGTGGCTCACTTTTTGATATATATATATATATTTTTTCCCCC----GATTGCTTGATGTCACCCTGTGCTTTTTCCATAAGACAA
s panTro5.chrX                    344581 154 + 155549662 TGTCATTCAGGAAGCCGTACCGTAGTCTCTCCGAGGCGTTGGGTG-----AAA--TTCACAGATTTCATC-TTCCGTGAAGTGTGGCTCACTTTTTGatatatatatatatatatTTTCCCCC----GATTGCTTGATGTCACCCTGTGCTTTTTCCATAAGACAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95096 154 -    177848 TGTCGTTCAGGAAGCCGTACCGTAGTCTCTCCGAGGCGTTGGGTG-----AAA--TTCACAGATTTCATC-TTCCGTGAAGTGTGGCTCACTTTTTGatatatatatatatatatTTTCCCCC----GATTGCTTGATGTCACCCTGTGCTTTTTCCATAAGACAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257135 152 +    417917 TGTCGTTCAGGAAGCCGTACCGTAGTCTCTCCGAGGCGTTGGGTG-----AAA--TTCACAGATTTCATC-TTCCGTGAAGTGTGGCTCACTTTTTG--ATATATATATATATTTTTTCCCCC----GATTGCTTGATGTCACCCTGTGCTTTTTCCGTAAGACAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67106 160 -     71016 TCTCCAC-AGAGAGCTGTAGCGTCGTTCCTCTGGGGCCTCCGGTGTCTCCAAACTTTCACGAGTTTCATC-TTCCGTGAAACCTGGTTCACTTTTTGATATCTCTCTTTATTTTTTTCCCCTT----GTGTGCTGCATGTCACCCTCTGCTTTTTGCATGACATAA
i macFas5.chrUn_KE146020       C 0 C 0
s otoGar3.GL873584                261955 134 +  11138919 ------TGAGAATGACAGGGAACAGTGTCGCCAA-------AGTT-----GGA--TCGACTGATTTCATCTTTCCGTGAAGCGCGGTTAACTTTCTG------------ATTTTTTTTCCCCCTTCTTTTTTCTTTTTTCTGCCCTGTGCTCTTTCCGTAAGGAAA
i otoGar3.GL873584             C 0 I 1
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e saiBol1.JH378345                244547  43 +    465904 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224511 304 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318442 232 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=66413.000000
s hg38.chrX_KI270880v1_alt        181089 55 +    284869 ATGCAAATGAGCCAGGCATTCTAACGAGGCG--AG-CCCTCGGAGGTGACCTCTTTCT
s panTro5.chrX                    344735 55 + 155549662 ATGCAAATGAGCCAGGCATTCTAACGAGGCG--AG-CCCTCGGAGGTGACCTCTTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95250 55 -    177848 ATGCAAATGAGCCAGGCATTCTAACGAGGCG--AG-CCCTCGGAGGTGACCTCTTTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257287 56 +    417917 ATGTAAATGAGCCAGGAATTCTAACGAGGCG--AGCCCCTCGGAGGTGACCTCTTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67266 49 -     71016 ATGTAAATGAA-CAGGAATTCTAAGGAGGCC--TG------GGAGGTGACCCCCTTTC
i macFas5.chrUn_KE146020       C 0 I 2
s saiBol1.JH378345                244590 56 +    465904 ATGTAAATGAG-CGGGAATTCTAACGAGGTGACAG-TACGCAGAGGTGACCCCGTTTT
i saiBol1.JH378345             I 43 I 12
s otoGar3.GL873584                262090 54 +  11138919 ATGCAAATGAA-CACAGATTCTAACGAGGCA--GG-GCCGCGGCGGTGACCCCTTTCT
i otoGar3.GL873584             I 1 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224511 304 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318442 232 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=70075.000000
s hg38.chrX_KI270880v1_alt        181144 28 +    284869 GGGGAAGCTCCGGTCTGCAAAACCACGA
s panTro5.chrX                    344790 28 + 155549662 GGGGAAGCTCCGGTCTGCAAAACCACGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95305 28 -    177848 GGGGAAGCTCCGGTCTGCAAAGCCACGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257343 27 +    417917 -GGGAAGCTCCGGTCTGCAAAACCACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318674 28 + 180051392 GGGGAAGCTCTGGTCTGCAAAATCACGA
i rheMac8.chr6                 I 232 I 1461
s macFas5.chrUn_KE146020           67317 28 -     71016 GGGGAAGCTCTGGTCTGCAAAATCACGA
i macFas5.chrUn_KE146020       I 2 C 0
s cerAty1.NW_012001098v1          224815 28 -   1025902 GGGGAAGCTCTGGTCTGCAAAATCACGA
i cerAty1.NW_012001098v1       I 304 I 1489
s saiBol1.JH378345                244658 28 +    465904 GGGAAACCTCAGCTCTGCAAAGCCACGG
i saiBol1.JH378345             I 12 C 0
s otoGar3.GL873584                262144 27 +  11138919 GCGGAAGCTC-GGTCTGCGCCGCCACCG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=-9241.000000
s hg38.chrX_KI270880v1_alt        181172 18 +    284869 --------TGAGAGA------GG-AAAACG-----TTT
s panTro5.chrX                    344818 18 + 155549662 --------TGAGAGA------GG-AAAACG-----TTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95333 16 -    177848 --------TGAGAGA------GG-AAAACG-------T
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257370 24 +    417917 --------TGAGACA------GGAAAAACGtttttttt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67345  3 -     71016 -----------------------------------GGC
i macFas5.chrUn_KE146020       C 0 C 0
s saiBol1.JH378345                244686 17 +    465904 ---------ACGAGA------CG-GGAACG-----TTT
i saiBol1.JH378345             C 0 I 4590
s otoGar3.GL873584                262171 32 +  11138919 CGGCCCAGCCAGAAAGCGCACGG-GAGACG-----CGC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=114618.000000
s hg38.chrX_KI270880v1_alt        181190 154 +    284869 TTTTTTTTTTTTGCAGAGAAAACTCAGGCCTGCTGTTTAATCAGGGCCTTTGCTGCGGCCGCTGCTCCTGCAGACACAGAGGCGTTAATGAGGCAAGACTAGTCCCCATGTCCCCACGTTGGAGGCCTGGGATGAGGATCCCTTCTCTGTCCCC
s panTro5.chrX                    344836 154 + 155549662 TTTTTTTTTTTTGCAGAGAAAACTCGGGCCTGCTGTTTAATCAGGGCCTTTGCTGCGGCCGCTGCTCCTGCAGACACAGAGGCGTTAATGAGGCAAGACTAGTCCCCACGTCCCCACGTTGGAGGCCTGGGATGAGGATCCCTTGTCTGCCCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95349 154 -    177848 TTTTTTTTTTTTGCAGAGAAAACTCGGGCCTGCTGTTTAATCAGGGCCTTTGCTGCGGCCGCTGCTCCTGCAGACACAGAGGCGTTAATGAGGCAAGACTAGTCCCCACGTCCCCACGTTGGAGGCCTGGGATGAGGATCCCTTGTCTGCCCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257394 153 +    417917 ttttttttttttGCAGAG-AAACTCGGGCCTGCTGTTTAATCAGGGCCTTTGCTGCGGCCGCTGCTTCTGCAGACACAGGGGCGTTAATGAGGCAAGACTAGTCCCCACGTCCCCACGATGGAGGCCTGGGATGAGGATCCCTCGTCTGCCCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67348 117 -     71016 TTTTTTTTTTTTGCAGAG-------------------TAACACAGGCCTTTGCT----------CCTCTGCAGCAACAGACGCATTAATGAGGCAAGACGGGTCTCGATGT--------TGGAGGCCTGGGATGGGGGCCCCTCGTCTGCTCCC
i macFas5.chrUn_KE146020       C 0 I 1352
s otoGar3.GL873584                262203 122 +  11138919 ---------CTCGCCAGG-GAACTGCGGCCTG-TGTTTCATCAGCGCC-----------CGCAGCCACTCGGGAAACAGGGTCGTTAATGAGGTGACATCAATCCCCA-----CCGCGCTGGGAGCCGGGCACCTGCCTCC-----CCGCCCCC
i otoGar3.GL873584             C 0 I 2
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e saiBol1.JH378345                244703 4590 +    465904 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I

a score=5184.000000
s hg38.chrX_KI270880v1_alt        181344 9 +    284869 CATGTCTGC
s panTro5.chrX                    344990 9 + 155549662 CATGTCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95503 9 -    177848 CATGTCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257547 9 +    417917 CATGTCTGC
i gorGor5.CYUI01015925v1       C 0 I 7
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I
e macFas5.chrUn_KE146020           67465 1352 -     71016 I

a score=273.000000
s hg38.chrX_KI270880v1_alt        181353 1 +    284869 A
s panTro5.chrX                    344999 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95512 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e colAng1.NW_012115411v1          325283 13642 +   1230721 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macNem1.NW_012017243v1          322493 937 +  25972781 I
e macFas5.chrUn_KE146020           67465 1352 -     71016 I
e gorGor5.CYUI01015925v1          257556 7 +    417917 I

a score=19040.000000
s hg38.chrX_KI270880v1_alt        181354 17 +    284869 TCCCAGGACGCAGGTGG
s panTro5.chrX                    345000 17 + 155549662 TCCCAGGACGCAGGTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95513 17 -    177848 TCCCAGGACGCAGGTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257563 17 +    417917 TCCCAGGACGCAGGTGG
i gorGor5.CYUI01015925v1       I 7 C 0
s macNem1.NW_012017243v1          323430 17 +  25972781 TCCCGGGAGGCAGCTGG
i macNem1.NW_012017243v1       I 937 C 0
s colAng1.NW_012115411v1          338925 17 +   1230721 TCCCAGGACGGAGCTGC
i colAng1.NW_012115411v1       I 13642 C 0
e manLeu1.NW_012108508v1          178595 5836 -    350446 I
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macFas5.chrUn_KE146020           67465 1352 -     71016 I

a score=3822.000000
s hg38.chrX_KI270880v1_alt        181371 2 +    284869 AT
s panTro5.chrX                    345017 2 + 155549662 AT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95530 2 -    177848 AT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257580 2 +    417917 AT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          323447 2 +  25972781 AT
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1          184431 2 -    350446 AT
i manLeu1.NW_012108508v1       I 5836 C 0
s colAng1.NW_012115411v1          338942 2 +   1230721 AT
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        172321 3902 -    811265 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e rheMac8.chr6                 143318702 1461 + 180051392 I
e macFas5.chrUn_KE146020           67465 1352 -     71016 I

a score=12075.000000
s hg38.chrX_KI270880v1_alt        181373 6 +    284869 CCGAGT
s panTro5.chrX                    345019 6 + 155549662 CCGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95532 6 -    177848 CCGAGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257582 6 +    417917 CCGAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68817 6 -     71016 CCAACC
i macFas5.chrUn_KE146020       I 1352 C 0
s macNem1.NW_012017243v1          323449 6 +  25972781 GCGAGT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176223 6 -    811265 CCGAGC
i chlSab2.chrUn_KE147541v1     I 3902 C 0
s manLeu1.NW_012108508v1          184433 6 -    350446 CTGAGT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338944 6 +   1230721 CTGAGC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I
e cerAty1.NW_012001098v1          224843 1489 -   1025902 I
e rheMac8.chr6                 143318702 1461 + 180051392 I

a score=7497.000000
s hg38.chrX_KI270880v1_alt        181379 2 +    284869 CT
s panTro5.chrX                    345025 2 + 155549662 CT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95538 2 -    177848 CT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257588 2 +    417917 CT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68823 2 -     71016 CC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323455 2 +  25972781 CT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226332 2 -   1025902 CT
i cerAty1.NW_012001098v1       I 1489 C 0
s chlSab2.chrUn_KE147541v1        176229 2 -    811265 CT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184439 2 -    350446 CT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338950 2 +   1230721 CT
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I
e rheMac8.chr6                 143318702 1461 + 180051392 I

a score=11000.000000
s hg38.chrX_KI270880v1_alt        181381 2 +    284869 GC
s panTro5.chrX                    345027 2 + 155549662 GC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95540 2 -    177848 GC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257590 2 +    417917 GC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320163 2 + 180051392 GC
i rheMac8.chr6                 I 1461 C 0
s macFas5.chrUn_KE146020           68825 2 -     71016 GC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323457 2 +  25972781 GC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226334 2 -   1025902 GC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176231 2 -    811265 GC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184441 2 -    350446 GC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338952 2 +   1230721 GC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                244703 4590 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I

a score=226329.000000
s hg38.chrX_KI270880v1_alt        181383 50 +    284869 TGCATAGACGGCCATTAGGTCCCAGGATGGAGCTGGATTCGAGCCTGCTG
s panTro5.chrX                    345029 50 + 155549662 TGCATAGATGGCCATTAGGTCCCGGGATGTAGCTGCATCCGAGCCTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95542 50 -    177848 TGCATAGATGGCCATTAGGTCCCGGGATGTAGTTGCATCCGAGCCTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257592 50 +    417917 TGTGTAGACAGCCATTAGATCCCAGGATGGAGCTGGATTCGAGCCTGCTG
i gorGor5.CYUI01015925v1       C 0 I 96
s rheMac8.chr6                 143320165 50 + 180051392 TGCATAGACGTCCGTTAGGTCCCGGGAGGCAGCTGGATTCGAGTCTGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68827 50 -     71016 TGCATAGACGTCCGTTAGGTCCCGGGAGGCAGCTGGATTCGAGTCTGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323459 50 +  25972781 TGTGTAGACGGCCATTAGGTCCCAGGACGGAGCTGGATTCGAGTCTGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226336 50 -   1025902 TGCATAGACGGCCGTTAGGTCTCGGGAGGCAGCTGGATTCCAGTCTGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176233 50 -    811265 TGTGTAGACAGACATTAGGTCCCTGGACGGAGCTGGATCCGAGCCTGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184443 50 -    350446 TGTGTAGACGACCATTAGGTCCCAGGACAGAGCTGGATTCGAGTCAGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338954 50 +   1230721 TGTGTAGACAGCCATTAGGTCCCGGGATGGAGCTGGATTTCAGTCTGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249293 50 +    465904 TGCAGACACGGCCATTAGGTCCCGGGACGGAGCTGCCTCGGAGCCTCCAG
i saiBol1.JH378345             I 4590 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=35254.000000
s hg38.chrX_KI270880v1_alt        181433 7 +    284869 TGTAGAC
s panTro5.chrX                    345079 7 + 155549662 TGTAGAC
i panTro5.chrX                 C 0 I 48
s panPan2.chrUn_NW_014024190v1     95592 7 -    177848 TGTAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257738 7 +    417917 TGTAGAC
i gorGor5.CYUI01015925v1       I 96 C 0
s rheMac8.chr6                 143320215 7 + 180051392 TGTAGAT
i rheMac8.chr6                 C 0 I 240
s macFas5.chrUn_KE146020           68877 7 -     71016 TGTTGAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323509 7 +  25972781 TGTAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226386 7 -   1025902 TGTAGAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176283 7 -    811265 TGTAGAC
i chlSab2.chrUn_KE147541v1     C 0 I 96
s manLeu1.NW_012108508v1          184493 7 -    350446 TGTAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339004 7 +   1230721 TGTAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249343 7 +    465904 TATGGAC
i saiBol1.JH378345             C 0 I 8
e otoGar3.GL873584                262325 2 +  11138919 I

a score=12764.000000
s hg38.chrX_KI270880v1_alt        181440 4 +    284869 GGCC
s panTro5.chrX                    345134 4 + 155549662 GGCC
i panTro5.chrX                 I 48 C 0
s panPan2.chrUn_NW_014024190v1     95599 4 -    177848 GGCC
i panPan2.chrUn_NW_014024190v1 C 0 I 1490
s gorGor5.CYUI01015925v1          257745 4 +    417917 GGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320462 4 + 180051392 AGCC
i rheMac8.chr6                 I 240 C 0
s macFas5.chrUn_KE146020           68884 4 -     71016 GGCT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323516 4 +  25972781 AGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226393 4 -   1025902 AGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176386 4 -    811265 AGAC
i chlSab2.chrUn_KE147541v1     I 96 C 0
s manLeu1.NW_012108508v1          184500 4 -    350446 AGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339011 4 +   1230721 AGCC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                249350 8 +    465904 I
e otoGar3.GL873584                262325 2 +  11138919 I

a score=15328.000000
s hg38.chrX_KI270880v1_alt        181444 10 +    284869 ATTAGGTCCC
s panTro5.chrX                    345138 10 + 155549662 ATTAGGTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97093 10 -    177848 ATTAGGTCCC
i panPan2.chrUn_NW_014024190v1 I 1490 C 0
s gorGor5.CYUI01015925v1          257749 10 +    417917 ATTAGGTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320466 10 + 180051392 ATTAGGTTCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68888  5 -     71016 ATTAG-----
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323520  5 +  25972781 ATTAG-----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226397  5 -   1025902 ATTAG-----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176390  5 -    811265 ATTAG-----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184504  5 -    350446 ATTAG-----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339015 10 +   1230721 ATTAGGTTCC
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345                249350  8 +    465904 I
e otoGar3.GL873584                262325  2 +  11138919 I

a score=84846.000000
s hg38.chrX_KI270880v1_alt        181454 21 +    284869 AGTCCCAGGATGGAGCCGGAT
s panTro5.chrX                    345148 21 + 155549662 AGTCCCAGGATGGAGCTGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97103 21 -    177848 AGTCCTAGGACCCAGCTGGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257759 15 +    417917 ------AGGATGGAGCTGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320476 21 + 180051392 AGTCCCAGGACGGAACTGGAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68893 20 -     71016 -GTCCCAGGATGGAGCTGGAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323525 20 +  25972781 -GTCCCGGGACGGAGCTGCAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226402 20 -   1025902 -GTCCCAGGATGGAGCTGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176395 20 -    811265 -GTCCCAGGACGGAGCTGGAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184509 20 -    350446 -GTCCCAGGACGGAGTGGGAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339025 21 +   1230721 AGTCCCAGGATGGAGCTGGAT
i colAng1.NW_012115411v1       C 0 T 480
s saiBol1.JH378345                249358 21 +    465904 CGTCACAGGACAGACCTGTAT
i saiBol1.JH378345             I 8 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=1852.000000
s hg38.chrX_KI270880v1_alt        181475 3 +    284869 TCA-
s panTro5.chrX                    345169 3 + 155549662 TCG-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97124 3 -    177848 TCG-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257774 3 +    417917 TCA-
i gorGor5.CYUI01015925v1       C 0 I 197
s rheMac8.chr6                 143320497 3 + 180051392 TTC-
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68913 3 -     71016 TCG-
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323545 3 +  25972781 CTG-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226422 3 -   1025902 TCG-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176415 3 -    811265 CCG-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184529 3 -    350446 TCG-
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249379 3 +    465904 -CGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          339046 480 +   1230721 T

a score=12834.000000
s hg38.chrX_KI270880v1_alt        181478 3 +    284869 AGC
s panTro5.chrX                    345172 3 + 155549662 AGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97127 3 -    177848 AGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257974 3 +    417917 AGC
i gorGor5.CYUI01015925v1       I 197 C 0
s rheMac8.chr6                 143320500 3 + 180051392 AGC
i rheMac8.chr6                 C 0 I 246
s macFas5.chrUn_KE146020           68916 3 -     71016 AGT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323548 3 +  25972781 AGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226425 3 -   1025902 AGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176418 3 -    811265 AGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184532 3 -    350446 AGC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249382 3 +    465904 AGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          339046 480 +   1230721 T

a score=27529.000000
s hg38.chrX_KI270880v1_alt        181481 6 +    284869 CTGCTA
s panTro5.chrX                    345175 6 + 155549662 CTGCTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97130 6 -    177848 CTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257977 6 +    417917 CTGCTA
i gorGor5.CYUI01015925v1       C 0 T 341
s rheMac8.chr6                 143320749 6 + 180051392 CTGCTG
i rheMac8.chr6                 I 246 C 0
s macFas5.chrUn_KE146020           68919 6 -     71016 CTGTTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323551 6 +  25972781 CTGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226428 6 -   1025902 CTGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176421 6 -    811265 CTGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184535 6 -    350446 CTGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249385 6 +    465904 CTGCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          339046 480 +   1230721 T

a score=7975.000000
s hg38.chrX_KI270880v1_alt        181487 2 +    284869 TG
s panTro5.chrX                    345181 2 + 155549662 TG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97136 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1 C 0 T 1592
s gorGor5.CYUI01015925v1          257642 2 +    417917 TG
i gorGor5.CYUI01015925v1       T 341 C 0
s rheMac8.chr6                 143320755 2 + 180051392 TG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68925 2 -     71016 TG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323557 2 +  25972781 TG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226434 2 -   1025902 TG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176427 2 -    811265 TG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184541 2 -    350446 TG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249391 2 +    465904 TG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          339046 480 +   1230721 T

a score=141000.000000
s hg38.chrX_KI270880v1_alt        181489 40 +    284869 TAGATGGCTATTAGGTCCCAGGATGCAGGTGGATCTGAGT
s panTro5.chrX                    345183 40 + 155549662 TAGATGGCTATTGGGTCCCAGGACGCAGGTGGATCCGAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95546 40 -    177848 TAGATGGCCATTAGGTCCCGGGATGTAGTTGCATCCGAGC
i panPan2.chrUn_NW_014024190v1 T 1592 C 0
s gorGor5.CYUI01015925v1          257644 40 +    417917 TAGATGGCTATTAGGTCCCGGGATGCAGGTGGATCCGAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320757 40 + 180051392 TAGACGGCCATTAGGTCCCAGGACGGAGCTGGATTCGAGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68927 40 -     71016 TAGACAGACATTAGGTCCCGGGACGGAGCTGCATCTGAGT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323559 40 +  25972781 TACATGGCCATTAGGTCCCAAGACACAGCTGCATCCGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226436 40 -   1025902 TAGACAGCCATTAGGTCCCAAGACACAGCTGCATCTGAGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176429 40 -    811265 TAGACAGACATTAGATCCTGAGATGGAGCTGCATCCAAGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184543 40 -    350446 TAGACAGACATTAGGTCCCGGGACAGAGCTGGATTCGAGT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249393 40 +    465904 TAGACGGCCATTAGGTCTGGGGACGGAGCTGCATCAGAGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          339046 480 +   1230721 T

a score=57145.000000
s hg38.chrX_KI270880v1_alt        181529 13 +    284869 CTGCTGCATAGAA
s panTro5.chrX                    345223 13 + 155549662 CTGCTACATAGAT
i panTro5.chrX                 C 0 T 150
s panPan2.chrUn_NW_014024190v1     95586 13 -    177848 CTGCTGTGTAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257684 13 +    417917 CTGTTGCATAGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320797 13 + 180051392 CTGCTGTGTAGAC
i rheMac8.chr6                 C 0 T 588
s macFas5.chrUn_KE146020           68967 13 -     71016 CTGCTGTGTACAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323599 13 +  25972781 GTGCTGTGTAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226476 13 -   1025902 GTGCTGTGTAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176469 13 -    811265 TTGCTGTATAGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184583 13 -    350446 CTGCTGTGTAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338566 13 +   1230721 CTGCTGCATAGAC
i colAng1.NW_012115411v1       T 480 C 0
s saiBol1.JH378345                249433 13 +    465904 CTGCTGTGTAGAC
i saiBol1.JH378345             C 0 T 96
e otoGar3.GL873584                262325  2 +  11138919 I

a score=140828.000000
s hg38.chrX_KI270880v1_alt        181542 30 +    284869 GGCCATTAGGTCCCAGGATGGAGCTGGATT
s panTro5.chrX                    345086 30 + 155549662 GGCCATTAGGTCCCAGGATGGAACTGGATT
i panTro5.chrX                 T 150 C 0
s panPan2.chrUn_NW_014024190v1     95599 30 -    177848 GGCCATTAGGTCCTGGGACGGAGCTGCATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257697 30 +    417917 GGCCATTAGGTCCCAGGATGGAGCTGGATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320222 30 + 180051392 GGCTATTAGGTCCCAGGATGGAGCTGGATT
i rheMac8.chr6                 T 588 C 0
s macFas5.chrUn_KE146020           68980 30 -     71016 GGCCATTAGCTCCTGGGACAGAGCTGGGTT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323612 30 +  25972781 AGCCATTAGGTCCCAGGACGGAACTGGATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226489 30 -   1025902 AGCCATTAGGTCCCAGGACGGAGCTGGATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176482 30 -    811265 GGTCATTATGTCCCGGGACGGAGCTGGATT
i chlSab2.chrUn_KE147541v1     C 0 I 33
s manLeu1.NW_012108508v1          184596 30 -    350446 AGACATTAGGTCCCAGGACGGAGCTGGATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338579 30 +   1230721 GGCCATTAGGTCCCGGGAGGCAGCTGGATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249350 30 +    465904 GGCCATGACGTCACAGGACAGACCTGTATC
i saiBol1.JH378345             T 96 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=111417.000000
s hg38.chrX_KI270880v1_alt        181572 27 +    284869 CGAGCCTGCTGTGTAGACAGCCATTAG
s panTro5.chrX                    345116 27 + 155549662 CGAGCCTGCTGTGTAGACGGCCATTAG
i panTro5.chrX                 C 0 I 204
s panPan2.chrUn_NW_014024190v1     95629 27 -    177848 GGACCCTGCTGTGTAGACAGCCTTTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257727 27 +    417917 CGAGCCTGCTATGTAGACGGCCATTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320252 27 + 180051392 CGAGGCTGCTGTGTAGACAGACATTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69010 27 -     71016 TGAGCTTGCTGTGTAGACAGACATTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323642 27 +  25972781 CGAGCCTGCTGTGTAGACAGACATTAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226519 27 -   1025902 TGAGCCTGCTGTGTAGACAGACATTAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184626 27 -    350446 CGAGCCTACTGTGTAGACAGACATTAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338609 27 +   1230721 CGAGTCTGCTGTGTAGACAGACAGGAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249380 27 +    465904 GGAGCCTGCTGTGTAGACGGCCATTAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176512 33 -    811265 I

a score=22134.000000
s hg38.chrX_KI270880v1_alt        181599 6 +    284869 GTCCCG
s panTro5.chrX                    345347 6 + 155549662 GTCCCG
i panTro5.chrX                 I 204 C 0
s panPan2.chrUn_NW_014024190v1     95656 6 -    177848 GTCCCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257754 6 +    417917 GTCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320279 6 + 180051392 GTCCCG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69037 6 -     71016 ATCCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323669 6 +  25972781 GTCCCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226546 6 -   1025902 GTCCCC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184653 6 -    350446 GTCCCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338636 6 +   1230721 GTCCCG
i colAng1.NW_012115411v1       C 0 T 48
s saiBol1.JH378345                249407 6 +    465904 GTCTGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176512 33 -    811265 I

a score=52109.000000
s hg38.chrX_KI270880v1_alt        181605 13 +    284869 GGATGCAGCTACA
s panTro5.chrX                    345353 13 + 155549662 GGATGCAGCTACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95662 13 -    177848 GGATGTAGCTGCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257760 13 +    417917 GGATGGAGCTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320285 13 + 180051392 GGACAGAGCTGCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69043 13 -     71016 AGACGGAGCTGCA
i macFas5.chrUn_KE146020       C 0 M 405
s macNem1.NW_012017243v1          323675 13 +  25972781 GGACGGAGCTGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226552 13 -   1025902 AGACACAGCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176545 13 -    811265 AGACACAGCTGCA
i chlSab2.chrUn_KE147541v1     I 33 C 0
s manLeu1.NW_012108508v1          184659 13 -    350446 AGACACAGCTACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338594 13 +   1230721 GGAGGCAGCTGGA
i colAng1.NW_012115411v1       T 48 C 0
s saiBol1.JH378345                249413 13 +    465904 GGACGGAGCTGCA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=19852.000000
s hg38.chrX_KI270880v1_alt        181618 6 +    284869 TCTGAG
s panTro5.chrX                    345366 6 + 155549662 TCTGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95675 6 -    177848 TCCGAG
i panPan2.chrUn_NW_014024190v1 C 0 I 1346
s gorGor5.CYUI01015925v1          257773 6 +    417917 GTCAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320298 6 + 180051392 TCTGAG
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          323688 6 +  25972781 TCTGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226565 6 -   1025902 TCCGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176558 6 -    811265 TCCGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184672 6 -    350446 TCCAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338607 6 +   1230721 TTCGAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249426 6 +    465904 TCAGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e macFas5.chrUn_KE146020           69056 405 -     71016 M

a score=183890.000000
s hg38.chrX_KI270880v1_alt        181624 49 +    284869 CCTGCTGCATAGATGGCCATTAG------GTCCTGGGATGGAGCTGCATTGGACC
s panTro5.chrX                    345372 49 + 155549662 CCTGCTGCATAGATGGCCATTAG------GTCCTGGGACGGAGCTGCATTGGACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97027 49 -    177848 CCTGCTGCATAGACGGCCATCAG------GTCCCAGGATGGAGCTGGATTCGAGC
i panPan2.chrUn_NW_014024190v1 I 1346 T 1538
s gorGor5.CYUI01015925v1          257779 55 +    417917 CCTGCTGTGTAGACAGCCATTAGGTCCCAGTCCCAGGATGGAGCGGGAGTCGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320304 49 + 180051392 TCTGCTGTGTGGATGGCCATTAG------CTCCTGGGACAGAGCTGGGTTTGAGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69464 49 -     71016 CCCGCTGCATAGACGTCCGTTAG------GTCCCGGGAGGCAGCTGGATTCGAGT
i macFas5.chrUn_KE146020       M 405 C 0
s macNem1.NW_012017243v1          323694 49 +  25972781 TCTGCTGTGTGGATGGCCATTAG------CTCCTGGGACAGAGCTGGGTTTGAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226571 49 -   1025902 CCTGCTGTGTAGACAGACATTAG------ATCCTGAGACGGAGCTGCATCCAAGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176564 49 -    811265 TTTGCTGTGTAGACGGCCATTAG------GTCCTGGAATGCAGCTGGATTCGAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184678 55 -    350446 TCTGCTGTGTAGACGGCCATTAGGTCCCAGTCCCAGGATGGAAATGGATTCGAGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338613 49 +   1230721 TCTGCTGTGTAGACAGACAGGAG------GTCCCGGGACGGAGCTGGATTCGAGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249432 48 +    465904 CCTGCTGTGTAGACGGCCATTAG------GTCTC-GGATACAGCTGCATCAGGGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=67848.000000
s hg38.chrX_KI270880v1_alt        181673 12 +    284869 CTGCTGTGTAGA
s panTro5.chrX                    345421 12 + 155549662 CTGCTGTGTAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95538 12 -    177848 CTGCTGCATAGA
i panPan2.chrUn_NW_014024190v1 T 1538 C 0
s gorGor5.CYUI01015925v1          257834 12 +    417917 CTGCTATGTAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320353 12 + 180051392 TTGCTGTGTAGA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69513 12 -     71016 CTGCTGTGTAGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323743 12 +  25972781 TTGCTGTGTAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226620 12 -   1025902 TTGCTGTGTAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176613 12 -    811265 CTGCTGTGTAGA
i chlSab2.chrUn_KE147541v1     C 0 I 2034
s manLeu1.NW_012108508v1          184733 12 -    350446 CTGCTGTGTAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338662 12 +   1230721 CTGCTGTGTAGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249480 12 +    465904 CTGCTGTGTAGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=114096.000000
s hg38.chrX_KI270880v1_alt        181685 35 +    284869 CAGCCATTAGGTCCCAGGATGCAGCTACATCTGAG
s panTro5.chrX                    345433 35 + 155549662 CAGCCTTTAGGTCCCGGGATGTAGCTGCATCCGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95550 35 -    177848 TGGCCATTAGGTCCCGGGATGTAGTTGCATCCGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257846 34 +    417917 TGGCTATTAGGT-CCAGGATGCAGCTACATCTGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320365 35 + 180051392 CAGCCATTAGCTCCCGGGATGGAGCTGCATCCGAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69525 35 -     71016 TGGCTATTAGGTCCCAGGATGGAGCTGGATTCGAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323755 35 +  25972781 CAGACATTAGGTCCCCAGACACAGCTGCTTCCGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226632 35 -   1025902 CGGCCATTAGGTCGCAGGATGGAGCTGGATTCGAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184745 35 -    350446 CAGACATTAGCTCCCGGGACGGAGCTGCATCCGAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338674 35 +   1230721 CAGACATTACGTCCCGGGACGGAGCTGCATCTGAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249492 35 +    465904 CAGTCACTATGTCCCAGGAGGGAGCTGCCTCTGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176625 2034 -    811265 I

a score=203261.000000
s hg38.chrX_KI270880v1_alt        181720 40 +    284869 CCTGCTGCATAGATGGCCATTAGGTCCTGGGACGGAGCTG
s panTro5.chrX                    345468 40 + 155549662 CCTGCTGTGTAGATGGCCATTAGGTCCTGGGACGGAGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95585 40 -    177848 CCTGCTGTGTAGACGGCCATTAGGTCCTGGGACGGAGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257880 40 +    417917 CCTGCTGCATAGACGGCCATTAGGTCCTGGGATGCAGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320400 40 + 180051392 TCTGCTGTGTAGACGGCCATTAGGTCCCGGGATGGAGCTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69560 40 -     71016 TCTGCTGTGTAGACAGACATTAGGTCCCGGGACGGAGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323790 40 +  25972781 CCTGCTGTGTAGACAGACATTAGATCCTGAGACGGAGCTG
i macNem1.NW_012017243v1       C 0 T 405
s cerAty1.NW_012001098v1          226667 40 -   1025902 TCAGCTGTGTAGACAGACATTAGGTCCCGGGACGGAGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178659 40 -    811265 CCTGCTGCATAGACGGCCATTAGGTCCTGGGACGGAGCTG
i chlSab2.chrUn_KE147541v1     I 2034 C 0
s manLeu1.NW_012108508v1          184780 40 -    350446 TCTGCTGTGTAGACAGACATTAGCTCCCGGGACGGAGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338709 40 +   1230721 TCTGCTGCGTAGATGGCCATTAGCTCCTGGGACAGAGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249527 40 +    465904 CCTACTGTGTAGACGGCCATTAGGTCCCGGGATGGAGCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=19110.000000
s hg38.chrX_KI270880v1_alt        181760 8 +    284869 CATTGGAC
s panTro5.chrX                    345508 8 + 155549662 CATTGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95625 8 -    177848 CATTGGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257920 8 +    417917 CATTGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320440 8 + 180051392 GATTTGAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69600 8 -     71016 CATCTGAG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226707 8 -   1025902 CATCTGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178699 8 -    811265 GATTCGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184820 8 -    350446 CATCCGAG
i manLeu1.NW_012108508v1       C 0 T 438
s colAng1.NW_012115411v1          338749 8 +   1230721 GATTCGAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249567 8 +    465904 CATTAGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=60375.000000
s hg38.chrX_KI270880v1_alt        181768 14 +    284869 CCTGCTGTGTAGAG
s panTro5.chrX                    345516 14 + 155549662 CATGCTGTGTAGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95633 14 -    177848 CCTGCTGTGTAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257928 14 +    417917 TCTGCTGTGTAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320448 14 + 180051392 TCTGCTGTGTAGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69608 14 -     71016 TCTGCTGTGTAGAT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226715 14 -   1025902 TCTGCTGTGTAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178707 14 -    811265 CCTGCTGTGTGGAT
i chlSab2.chrUn_KE147541v1     C 0 T 2431
s manLeu1.NW_012108508v1          184390 14 -    350446 CCTGCTGTGTAGAC
i manLeu1.NW_012108508v1       T 438 C 0
s colAng1.NW_012115411v1          338757 14 +   1230721 TGTGCTGTGTAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249575 14 +    465904 CCTGCTGTGTAGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=24235.000000
s hg38.chrX_KI270880v1_alt        181782 7 +    284869 AGCCATT
s panTro5.chrX                    345530 7 + 155549662 AGCCTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95647 7 -    177848 AGCCTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257942 7 +    417917 AGCCATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320462 7 + 180051392 AGCCATT
i rheMac8.chr6                 C 0 I 102
s macFas5.chrUn_KE146020           69622 7 -     71016 GGCCATT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226729 7 -   1025902 AGCCATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176290 7 -    811265 AGACATT
i chlSab2.chrUn_KE147541v1     T 2431 C 0
s manLeu1.NW_012108508v1          184404 7 -    350446 AGACATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338771 7 +   1230721 AGACATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249589 7 +    465904 AGCCATG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=32014.000000
s hg38.chrX_KI270880v1_alt        181789 9 +    284869 AGGTCCTGG
s panTro5.chrX                    345537 9 + 155549662 AGGTCCCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95654 9 -    177848 AGGTCCCGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257949 9 +    417917 AGGTCCCAG
i gorGor5.CYUI01015925v1       C 0 I 449
s rheMac8.chr6                 143320571 9 + 180051392 AGGTCCCAG
i rheMac8.chr6                 I 102 I 150
s macFas5.chrUn_KE146020           69629 9 -     71016 AGGTCCCAA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226736 9 -   1025902 AGGTCCCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176297 9 -    811265 AGATCCTGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184411 9 -    350446 AGATCCTGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338778 9 +   1230721 AGATCCTGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249596 9 +    465904 AGATCTCAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=40608.000000
s hg38.chrX_KI270880v1_alt        181798 14 +    284869 GATGTAGCTGCATC
s panTro5.chrX                    345546 14 + 155549662 GATGCAGCTACATC
i panTro5.chrX                 C 0 I 1485
s panPan2.chrUn_NW_014024190v1     95663 14 -    177848 GATGTAGCTGCATC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258407 14 +    417917 GATGTAGCTGCATC
i gorGor5.CYUI01015925v1       I 449 C 0
s macFas5.chrUn_KE146020           69638 14 -     71016 GACACAGCTGCATC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226745 14 -   1025902 GATGGAGTTGGATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176306 14 -    811265 GACGGAGCTGCATC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184420 14 -    350446 GACGGAGCTGCATC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338787 14 +   1230721 GACGGAGCTGCATC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249605 14 +    465904 GACAGACCTGTATC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=33161.000000
s hg38.chrX_KI270880v1_alt        181812 13 +    284869 CGAGTCTGCTGTG
s panTro5.chrX                    347045 13 + 155549662 CGAGCCTGCTGTG
i panTro5.chrX                 I 1485 C 0
s panPan2.chrUn_NW_014024190v1     95677 13 -    177848 CGAGCCTGCTGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258421 12 +    417917 -CAGTCTGCTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           69652 13 -     71016 CGAGTGTGCTGTG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226759 13 -   1025902 CGAGTCTGCTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176320 13 -    811265 CAAGTTTGCTGTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338801 13 +   1230721 TGAGTCTGCTGTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249619 13 +    465904 GGAGCCTGCTGTG
i saiBol1.JH378345             C 0 I 72
e manLeu1.NW_012108508v1          184434  0 -    350446 C
e otoGar3.GL873584                262325  2 +  11138919 I
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=20337.000000
s hg38.chrX_KI270880v1_alt        181825 10 +    284869 TAGACGGCCA
s panTro5.chrX                    347058 10 + 155549662 TAGACAGCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95690 10 -    177848 TAGACGGCCA
i panPan2.chrUn_NW_014024190v1 C 0 I 1394
s gorGor5.CYUI01015925v1          258433  9 +    417917 TAGAC-GCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           69665 10 -     71016 TAGACAGCCA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226772 10 -   1025902 TAGACAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176333 10 -    811265 TAGACGGTCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338814 10 +   1230721 TAGACAGACA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249704  9 +    465904 TAGACGGCC-
i saiBol1.JH378345             I 72 C 0
e manLeu1.NW_012108508v1          184434  0 -    350446 C
e otoGar3.GL873584                262325  2 +  11138919 I
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=10444.000000
s hg38.chrX_KI270880v1_alt        181835 4 +    284869 TTAG
s panTro5.chrX                    347068 4 + 155549662 TTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97094 4 -    177848 TTAG
i panPan2.chrUn_NW_014024190v1 I 1394 C 0
s gorGor5.CYUI01015925v1          258442 4 +    417917 TTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           69675 4 -     71016 TTAG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226782 4 -   1025902 TTAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176343 4 -    811265 TTAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338824 4 +   1230721 TTAG
i colAng1.NW_012115411v1       C 0 I 54
e manLeu1.NW_012108508v1          184434 0 -    350446 C
e saiBol1.JH378345                249713 0 +    465904 C
e otoGar3.GL873584                262325 2 +  11138919 I
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=6652.000000
s hg38.chrX_KI270880v1_alt        181839 12 +    284869 GTCCCAGTCCCA
s panTro5.chrX                    347072 12 + 155549662 GTCCCAGTCCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97098 12 -    177848 GTCCCAGTCCTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258446 12 +    417917 GTCCCAGTCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           69679  7 -     71016 GTCCCAG-----
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226786  7 -   1025902 ATCCTGA-----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176347  7 -    811265 GTCCCGG-----
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1          184434  0 -    350446 C
e saiBol1.JH378345                249713  0 +    465904 C
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338828 54 +   1230721 I
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=1000.000000
s hg38.chrX_KI270880v1_alt        181851 1 +    284869 G
s panTro5.chrX                    347084 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97110 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258458 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 T 501
s colAng1.NW_012115411v1          338882 1 +   1230721 G
i colAng1.NW_012115411v1       I 54 C 0
e manLeu1.NW_012108508v1          184434 0 -    350446 C
e saiBol1.JH378345                249713 0 +    465904 C
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176354 0 -    811265 C
e cerAty1.NW_012001098v1          226793 0 -   1025902 C
e rheMac8.chr6                 143320580 150 + 180051392 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T
e macFas5.chrUn_KE146020           69686 0 -     71016 C

a score=87899.000000
s hg38.chrX_KI270880v1_alt        181852 37 +    284869 GATGGAGCTGGAGTTGAGCCTGCTATGTAGATGGCTA
s panTro5.chrX                    347085 37 + 155549662 GACCCAGCTGGATTCGAGCCTGCTGTGTAGACACCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97111 37 -    177848 GACCCAGCTGGATTCGAGCCTGCTGCATAGACAGCCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          257958 37 +    417917 GATGGAGCGGGAGTCGAGCCTGCTATGTAGATGGCTA
i gorGor5.CYUI01015925v1       T 501 C 0
s rheMac8.chr6                 143320730 37 + 180051392 GACGGAGCTGCATCTGAGTCTGCTGTGTAGACGGCCA
i rheMac8.chr6                 I 150 C 0
s macFas5.chrUn_KE146020           69686 37 -     71016 GACGGAACTGGATTCGAGCCTGCTGTGTAGACAGACA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226793 37 -   1025902 GACGGAGCTGCATCCAAGTTTGCTGTGTAGACAGCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176354 37 -    811265 GACGGAGCTGGATTCGAGCCTGCTGTGTAGACAGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184434 23 -    350446 --------------TGAGTCTGCTGTGTAGACGACCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338883 37 +   1230721 GACGGAGCTGGATTCGAGTCAGCTGTGTAGACAGCCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249713  1 +    465904 ------------------------------------A
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e macNem1.NW_012017243v1          323830 405 +  25972781 T

a score=124846.000000
s hg38.chrX_KI270880v1_alt        181889 30 +    284869 TTAGGTCCCAGGACGCAGGTGGATCCGAGT
s panTro5.chrX                    347122 30 + 155549662 TTAGGTCCTGCGACGGAGCTGGATTCGAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97148 30 -    177848 TCAGGTCCCGGGACGGAGCTGGATTCGAGC
i panPan2.chrUn_NW_014024190v1 C 0 I 61
s gorGor5.CYUI01015925v1          257995 30 +    417917 TTAGGTCCCGGGATGCAGCTACATCTGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320767 30 + 180051392 TTAGGTCCCAGGACGGAGCTGGATTCGAGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69723 30 -     71016 TTAGATCCCGAGACGGAGCTGCATCTCAGT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323425 30 +  25972781 TTAGGTCCCGGGAGGCAGCTGGATGCGAGT
i macNem1.NW_012017243v1       T 405 C 0
s cerAty1.NW_012001098v1          226830 30 -   1025902 TTTGGTCCCGGGACAGAGCTGGATTCGAGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176391 30 -    811265 TTAGGTCCCAGGACGGAGCTGGATCCGAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184457 30 -    350446 TTAGGTCCCAGGACAGAGCTGGATTCGAGT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338920 30 +   1230721 TTAGCTCCCAGGACGGAGCTGCATCTGAGC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249714 30 +    465904 TGAGATCCCGGGACAGACCTGTATCCCAGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=31281.000000
s hg38.chrX_KI270880v1_alt        181919 8 +    284869 CTGCTGCA
s panTro5.chrX                    347152 8 + 155549662 CTGCTGCA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258025 8 +    417917 CTGTTGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320797 8 + 180051392 CTGCTGTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69753 8 -     71016 CTGCTGTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323455 8 +  25972781 CTGCTGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226860 8 -   1025902 CAGCTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176421 8 -    811265 CTGCTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184487 8 -    350446 CAGCTGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338950 8 +   1230721 CTGCTGTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249744 8 +    465904 CTGCTGTG
i saiBol1.JH378345             C 0 T 120
e otoGar3.GL873584                262325 2 +  11138919 I
e panPan2.chrUn_NW_014024190v1     97178 61 -    177848 I

a score=21073.000000
s hg38.chrX_KI270880v1_alt        181927 5 +    284869 TAGAT
s panTro5.chrX                    347160 5 + 155549662 TAGAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258033 5 +    417917 TAGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320805 5 + 180051392 TAGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69761 5 -     71016 TGGAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323463 5 +  25972781 TAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226868 5 -   1025902 TAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176429 5 -    811265 TAGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184495 5 -    350446 TAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338958 5 +   1230721 TAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249632 5 +    465904 TAGAT
i saiBol1.JH378345             T 120 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e panPan2.chrUn_NW_014024190v1     97178 61 -    177848 I

a score=215217.000000
s hg38.chrX_KI270880v1_alt        181932 48 +    284869 GGCCATTAGGTCCCAG-----------------------------------------------GA-TGGAGCTGGATTCGAGCCTGCTGTGTAGAC
s panTro5.chrX                    347165 48 + 155549662 GGCCATTAGGTCCCAG-----------------------------------------------GA-TGGAGTTGGATCCGAGCCTGCTGTGTAGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97239 48 -    177848 AGCCATTAGGTCCTGG-----------------------------------------------GA-TGGAGTTGGATTCGAGCCTGCTGTGTAGAC
i panPan2.chrUn_NW_014024190v1 I 61 C 0
s gorGor5.CYUI01015925v1          258038 95 +    417917 GGCCATTAGGTCCCAGGATGGAGCTGGATTCGAGCCTGCTGTGTAGACGGCCATTAGGTCCCAGA-TGGAGCTGGATTCGAGCCTGCTGTGTAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320810 48 + 180051392 AGCCATTAGGTCCCAG-----------------------------------------------GA-CGGAGTGGGATTCGAACCTGCTGTGTAGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69766 48 -     71016 GGCCATTAGCTCCTGG-----------------------------------------------GA-CAGAGCTGGGTTTGAGCTTGCTGTGTAGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323468 48 +  25972781 GGCCATTAGGTCCCAG-----------------------------------------------GA-CGGAGCTGGATTCGAGTCTGCTGTGTAGAC
i macNem1.NW_012017243v1       C 0 I 41
s cerAty1.NW_012001098v1          226873 48 -   1025902 AGACATTAGGTCCCAG-----------------------------------------------GA-CGGAGCTGGATTCGATCCTGCTGTGTAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176434 48 -    811265 AGACATTAGATCCTGA-----------------------------------------------GA-TGGAGCTGCATCCAAGTTTGCTGTATAGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184500 48 -    350446 AGCCATTAGGTCCCAG-----------------------------------------------GA-CGGAGTGGGATTCGAGCCTGCTGTGTAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338963 48 +   1230721 AGCCATTAGGTCCCGG-----------------------------------------------GA-TGGAGCTGGATTTCAGTCTGCTGTGTAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249637 49 +    465904 GGCCATTAGGTCCCGG-----------------------------------------------GACCGGAGCTGCATCAGAGCCTGCTGTGTAGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I

a score=1092.000000
s hg38.chrX_KI270880v1_alt        181980 3 +    284869 GGC-
s panTro5.chrX                    347213 3 + 155549662 AGC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97287 3 -    177848 AGC-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258133 3 +    417917 GGC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320858 3 + 180051392 AGA-
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69814 3 -     71016 AGA-
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226921 3 -   1025902 AGA-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176482 3 -    811265 GGT-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184548 3 -    350446 AGA-
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339011 3 +   1230721 AGC-
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249686 3 +    465904 -GCC
i saiBol1.JH378345             C 0 I 554
e otoGar3.GL873584                262325 2 +  11138919 I
e macNem1.NW_012017243v1          323516 41 +  25972781 I

a score=5500.000000
s hg38.chrX_KI270880v1_alt        181983 1 +    284869 C
s panTro5.chrX                    347216 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97290 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 T 198
s gorGor5.CYUI01015925v1          258136 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320861 1 + 180051392 C
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69817 1 -     71016 C
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226924 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176485 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184551 1 -    350446 C
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339014 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250243 1 +    465904 C
i saiBol1.JH378345             I 554 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e macNem1.NW_012017243v1          323516 41 +  25972781 I

a score=73954.000000
s hg38.chrX_KI270880v1_alt        181984 30 +    284869 ATTAGGTCCCAGTCCCAGGATGGAGCTGGA
s panTro5.chrX                    347217 30 + 155549662 ATTAGGTCCCAGTCCCAGGACCCAGCTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97093 30 -    177848 ATTAGGTCCCAGTCCTAGGACCCAGCTGGA
i panPan2.chrUn_NW_014024190v1 T 198 C 0
s gorGor5.CYUI01015925v1          258137 30 +    417917 ATTAGGTCCCAGTCCCAGGATGGAGCTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320862 24 + 180051392 ATTAG------GTCCCGGGACGGAGCTGCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69818 24 -     71016 ATTAG------GTCCCCAGACACAGCTGCT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226925 24 -   1025902 ATTAG------GTCCCAGGACGGAGCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176486 24 -    811265 ATTAT------GTCCCGGGACGGAGCTGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184552 24 -    350446 ATTAG------GTCCCGGGACAGAGCTGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339015 30 +   1230721 ATTAGGTTCCAGTCCCAGGATGGAGCTGGA
i colAng1.NW_012115411v1       C 0 T 200
s saiBol1.JH378345                250244 24 +    465904 ACTGT------GTCCCAAGAGGGAGCTGCT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e macNem1.NW_012017243v1          323516 41 +  25972781 I

a score=22850.000000
s hg38.chrX_KI270880v1_alt        182014 13 +    284869 GTGGAGCCTGCTA
s panTro5.chrX                    347247 13 + 155549662 TTCGAGCCTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97123 13 -    177848 TTCGAGCCTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258167 13 +    417917 GTCAAGCCTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320886 13 + 180051392 TCTGAGTCTGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69842 13 -     71016 TCCGAGCCTGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226949 13 -   1025902 TCTGAGCCTGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176510 13 -    811265 TTCAAGTCAGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184576  2 -    350446 TT-----------
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250268 13 +    465904 TCTGAGCTTGCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          339045 200 +   1230721 T
e macNem1.NW_012017243v1          323516 41 +  25972781 I

a score=29872.000000
s hg38.chrX_KI270880v1_alt        182027 11 +    284869 TGTAGATGGCT
s panTro5.chrX                    347260 11 + 155549662 TGTAGACACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97136 11 -    177848 CATAGACAGCC
i panPan2.chrUn_NW_014024190v1 C 0 I 144
s gorGor5.CYUI01015925v1          258180 11 +    417917 TGTAGACGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320899 11 + 180051392 TGTAGATGGCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69855 11 -     71016 TGTAGACAGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323557 11 +  25972781 TGTACATGGCC
i macNem1.NW_012017243v1       I 41 C 0
s cerAty1.NW_012001098v1          226962 11 -   1025902 TGTAGACAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176523 11 -    811265 TGTAGACAGCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                250281 11 +    465904 TGTAGACGGCC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          184578  0 -    350446 C
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=62046.000000
s hg38.chrX_KI270880v1_alt        182038 24 +    284869 ATTAG------GTCCCAGGACGCAGGTGGA
s panTro5.chrX                    347271 24 + 155549662 ATTAG------GTCCCGTGACGGAGCTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97291 24 -    177848 ATTAG------GTCCTGGGAAGGAGCTGGA
i panPan2.chrUn_NW_014024190v1 I 144 C 0
s gorGor5.CYUI01015925v1          258191 30 +    417917 ATTAGGTCCCAGTCCCAGGATGGAGCTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320910 24 + 180051392 ATTAG------GTCCCAAGACACAGCTGCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69866 24 -     71016 ATTAG------ATCCTGAGACGGAGCTGCA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323568 24 +  25972781 ATTAG------GTCCCAAGACACAGCTGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226973 24 -   1025902 ATTAG------ATCCTGAGACGGAGCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176534 24 -    811265 ATTAG------GTCCCAAGACACAGCTGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                250292 24 +    465904 ATGAG------ATCCCGGGACAGACCTGTA
i saiBol1.JH378345             C 0 T 627
e manLeu1.NW_012108508v1          184578  0 -    350446 C
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=24345.000000
s hg38.chrX_KI270880v1_alt        182062 7 +    284869 TCCGAGT
s panTro5.chrX                    347295 7 + 155549662 TTCGAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97315 7 -    177848 TTCGAGC
i panPan2.chrUn_NW_014024190v1 C 0 T 294
s gorGor5.CYUI01015925v1          258221 7 +    417917 TTTGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320934 7 + 180051392 TCCGAGT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69890 7 -     71016 TCCAAGT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323592 7 +  25972781 TCCGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226997 7 -   1025902 TCTGAGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176558 7 -    811265 TCCGAGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184578 5 -    350446 --CGAGT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249689 7 +    465904 TCTGAGC
i saiBol1.JH378345             T 627 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=224668.000000
s hg38.chrX_KI270880v1_alt        182069 56 +    284869 CTGCTGCATAGATGGCCATTAG------GTCCCAGGATGGAGCTGGATTCGAGCCTGCTATG
s panTro5.chrX                    347302 56 + 155549662 CTGCTGCATAGACGGCCATTAG------GTCCCGGGACGGAGCTGGATTCGAGCCTGCTGTG
i panTro5.chrX                 C 0 T 2202
s panPan2.chrUn_NW_014024190v1     97028 56 -    177848 CTGCTGCATAGACGGCCATCAG------GTCCCAGGATGGAGCTGGATTCGAGCCTGCTGTG
i panPan2.chrUn_NW_014024190v1 T 294 C 0
s gorGor5.CYUI01015925v1          258228 62 +    417917 CTGCTGTGTAGACGGCCATTAGGTCCCAGTCCCAGGATGGAGCTGCATTGGACCCTGCTGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320941 56 + 180051392 GTGCTGTGTAGACAGCCATTAG------GTCCCAGGACGGAACTGGATTTGAGCCTGCTGTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69897 56 -     71016 TTGCTGTGTAGACAGCCATTAG------GTCCTGGGACAGAGCTGGATTCGAGTCAGCTGTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323599 56 +  25972781 GTGCTGTGTAGACAGCCATTAG------GTCCCAGGACGGAACTGGATTCGAGCCTGCTGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227004 56 -   1025902 CTGCTGTGTAGACGACCATTAG------GTCCCAGGACGGAGCTGGATTCGAGTCAGCTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176565 56 -    811265 TTGCTGTGTAGACGGCCATTAG------GTCCTGGAATGCAGCTGGATTCGAGCCTGCTGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184583 56 -    350446 CTGCTGTGTAGACAGACATTAG------GTCCCAGGACGGAGCTGGATTCGAGCCTACTGTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249696 56 +    465904 CTGCTGTGTAGACGGCCATGAG------ATCCCGGGACAGACCTGTATCCCAGCCTGCTGTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=18507.000000
s hg38.chrX_KI270880v1_alt        182125 5 +    284869 TAGAT
s panPan2.chrUn_NW_014024190v1     97084 5 -    177848 TAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258290 5 +    417917 TAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320997 5 + 180051392 TAGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69953 5 -     71016 TAGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323655 5 +  25972781 TAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227060 5 -   1025902 TAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176621 5 -    811265 TAGAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184639 5 -    350446 TAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249752 5 +    465904 TAGAT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e panTro5.chrX                    347358 2202 + 155549662 T
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=40651.000000
s hg38.chrX_KI270880v1_alt        182130 16 +    284869 GGCTATTAGGTCTCGG
s panPan2.chrUn_NW_014024190v1     97089 16 -    177848 AGTCATTAGGTCCCAG
i panPan2.chrUn_NW_014024190v1 C 0 I 6
s gorGor5.CYUI01015925v1          258295 16 +    417917 AGCCATTAGGTCCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321002 16 + 180051392 AGACATTAGATCCTGA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69958 16 -     71016 AGCCATTAGGTCCCAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323660 16 +  25972781 AGACATTAGGTCCCGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227065 16 -   1025902 AGCCATTAGGTCCCAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184644 16 -    350446 AGACATTAGGTCCCAA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249757 16 +    465904 GGCCATTAGGTCCCGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e panTro5.chrX                    347358 2202 + 155549662 T
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=29767.000000
s hg38.chrX_KI270880v1_alt        182146 10 +    284869 GATGCAGCTA
s panTro5.chrX                    345156 10 + 155549662 GATGGAGCTG
i panTro5.chrX                 T 2202 C 0
s panPan2.chrUn_NW_014024190v1     97111 10 -    177848 GACCCAGCTG
i panPan2.chrUn_NW_014024190v1 I 6 C 0
s gorGor5.CYUI01015925v1          258311 10 +    417917 GATGCAGCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321018 10 + 180051392 GACGGAGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69974 10 -     71016 GACGGAGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323676 10 +  25972781 GACGGAGCTG
i macNem1.NW_012017243v1       C 0 I 144
s cerAty1.NW_012001098v1          227081 10 -   1025902 GACGGAGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184660 10 -    350446 GACACAGCTA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                249773 10 +    465904 GACGGAGCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          339045 200 +   1230721 T

a score=9965.000000
s hg38.chrX_KI270880v1_alt        182156 4 +    284869 CATC
s panTro5.chrX                    345166 4 + 155549662 GAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97121 4 -    177848 GATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258321 4 +    417917 CATC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321028 4 + 180051392 CATC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69984 4 -     71016 CATT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323830 4 +  25972781 CATC
i macNem1.NW_012017243v1       I 144 C 0
s cerAty1.NW_012001098v1          227091 4 -   1025902 CATC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184670 4 -    350446 CATC
i manLeu1.NW_012108508v1       C 0 I 161
s colAng1.NW_012115411v1          338845 4 +   1230721 CATC
i colAng1.NW_012115411v1       T 200 C 0
s saiBol1.JH378345                249783 4 +    465904 CATA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626 0 -    811265 C

a score=14724.000000
s hg38.chrX_KI270880v1_alt        182160 6 +    284869 TGAGCC
s panTro5.chrX                    345170 6 + 155549662 CGAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97125 6 -    177848 CGAGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258325 6 +    417917 TGAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321032 6 + 180051392 TGAGTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69988 6 -     71016 CGAGCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323834 6 +  25972781 CAAGTT
i macNem1.NW_012017243v1       C 0 T 144
s cerAty1.NW_012001098v1          227095 6 -   1025902 TGAGTC
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          338849 6 +   1230721 CAGGTT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249787 6 +    465904 TGAGCC
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          184674 161 -    350446 I
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626 0 -    811265 C

a score=45400.000000
s hg38.chrX_KI270880v1_alt        182166 14 +    284869 TGCTGCATAGACGG
s panTro5.chrX                    345176 14 + 155549662 TGCTATGTAGATGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97131 14 -    177848 TGCTGCATAGACAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258331 14 +    417917 TGCTGCATAGACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321038 14 + 180051392 TGCTGTGTGGATGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69994 14 -     71016 TGCTGTGTAGACAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323696 14 +  25972781 TGCTGTGTGGATGG
i macNem1.NW_012017243v1       T 144 C 0
s cerAty1.NW_012001098v1          227101 14 -   1025902 TGCTGTGTGGATGG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          338855 14 +   1230721 TGCTGTGTAGATGG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                249793 14 +    465904 TGCTGTGTAGACAG
i saiBol1.JH378345             C 0 I 339
e manLeu1.NW_012108508v1          184674 161 -    350446 I
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C

a score=101652.000000
s hg38.chrX_KI270880v1_alt        182180 39 +    284869 CCATTAGGTCCTGGGACAGAGCTGCATTGGACCCTGCTG
s panTro5.chrX                    345190 39 + 155549662 CTATTGGGTCCCAGGACGCAGGTGGATCCGAGTCTGCTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97145 39 -    177848 CCATCAGGTCCCGGGACGGAGCTGGATTCGAGCCTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258345 39 +    417917 CCATTAGGTCCTGGGATGGAGCTGCATTGGACTCTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321052 39 + 180051392 CCATTAGCTCCTGGGACAGAGCTGGGTTTGAGCTTGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70008 39 -     71016 ACATTAGATCCTGAGACGGAGCTGCATCCAAGTTTGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323710 39 +  25972781 CCATTAGCTCCTGGGACAGAGCTGGGTTTGAGCTTGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227115 39 -   1025902 CCATTAGTTCCGGGGACGGAGTTGGATTTGAGCCTGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          338869 39 +   1230721 CCTTTAGGTCCTCGGACGGAGCTGGATTCGAGTCAGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250146 39 +    465904 CCATGAGATCCTGGGGTGAAACTGCATCAGATCCTGCTG
i saiBol1.JH378345             I 339 C 0
e manLeu1.NW_012108508v1          184674 161 -    350446 I
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C

a score=92778.000000
s hg38.chrX_KI270880v1_alt        182219 23 +    284869 TGTAGACAGCCATTAGGTCCCAG
s panTro5.chrX                    345229 23 + 155549662 CATAGATGGCCATTAGGTCCCAG
i panTro5.chrX                 C 0 I 2175
s panPan2.chrUn_NW_014024190v1     97184 23 -    177848 TGTAGACAGCCATTAGGTCCCGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258384 23 +    417917 TGTAGACAGCCATTAGGTCCCGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321091 23 + 180051392 TGTAGACAGACATTAGGTCTCCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70047 23 -     71016 TGTAGACAGCCATTAGCTCCCGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323749 23 +  25972781 TGTAGACAGACATTAGGTCCCCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227154 23 -   1025902 TATAGACGGCCATTAGGTCCCGG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184835 23 -    350446 TGTAGACAGCCATTAGGTCCCAA
i manLeu1.NW_012108508v1       I 161 C 0
s colAng1.NW_012115411v1          338908 23 +   1230721 TGTAGACAGCCATTAGCTCCCAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250185 23 +    465904 TGTAGACAGCCATTAGCTCCTGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C

a score=43983.000000
s hg38.chrX_KI270880v1_alt        182242 14 +    284869 GATGTAGCTGCATC
s panTro5.chrX                    347427 14 + 155549662 GAAGGAGCTGGATT
i panTro5.chrX                 I 2175 C 0
s panPan2.chrUn_NW_014024190v1     97207 14 -    177848 GACGGAGCTGGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258407 14 +    417917 GATGTAGCTGCATC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321114 14 + 180051392 GACACAGCTGCTTC
i rheMac8.chr6                 C 0 I 48
s macFas5.chrUn_KE146020           70070 14 -     71016 GACGGAGCTGCATC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323772 14 +  25972781 GACACAGCTGCTTC
i macNem1.NW_012017243v1       C 0 T 96
s cerAty1.NW_012001098v1          227177 14 -   1025902 GATGCAGCTGCATT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184858 14 -    350446 GACACAGCTGCATC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338931 14 +   1230721 GACGGAGCTGCATC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250208 14 +    465904 GAGGGTGCTGCATC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C

a score=78357.000000
s hg38.chrX_KI270880v1_alt        182256 34 +    284869 CGAGTCTGCTGCATAGATGGCCATTAG------G------TCCCAG
s panTro5.chrX                    347441 34 + 155549662 CGAGTCTGCTGCATAGACGGCCATTAG------G------TCCCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97221 34 -    177848 CGAGCCTGCTGTGTAGACAGCCATTAG------G------TCCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258421 32 +    417917 C-AGTCTGCTGTGTAGAC-GCCATTAG------G------TCCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321176 28 + 180051392 CAAGTTTGCTGTGTAGACAGCCATTAG------G------------
i rheMac8.chr6                 I 48 C 0
s macFas5.chrUn_KE146020           70084 28 -     71016 CGAGTCTGCTGTGTTGATGGCCATTAG------G------------
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323690 28 +  25972781 TGAGTCTGCTGTGTGGATGGCCATTAG------C------------
i macNem1.NW_012017243v1       T 96 C 0
s cerAty1.NW_012001098v1          227191 28 -   1025902 CGAGTCTGTTGTGTAGACAGCCATTAG------G------------
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184872 34 -    350446 CGAGCCTGCTGTGTAGACGGCCATTAGGTTCCAG------------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338945 34 +   1230721 TGAGCCTGCTGTGTAGACAGCCATTAG------GTCCCGG------
i colAng1.NW_012115411v1       C 0 T 472
s saiBol1.JH378345                250222 28 +    465904 AGAGCCTGCTGTGTAGACAGTCACTGT------G------------
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C

a score=53853.000000
s hg38.chrX_KI270880v1_alt        182290 20 +    284869 TCCCAGGATGGAGCTGGATT
s panTro5.chrX                    347475 14 + 155549662 ------GACGGAGCTGGATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97255 14 -    177848 ------GATGGAGTTGGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258453 20 +    417917 TCCCAGGATGGAGCTGGATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321204 20 + 180051392 TCCCGGGACAGAGCTGGATT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70112 20 -     71016 TCCTGGGATGGAACTGGATT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323718 20 +  25972781 TCCTGGGACAGAGCTGGGTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227219 20 -   1025902 TCCCAGGACAGAGCTGGATT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184906 20 -    350446 TCCCAGGATGGAGCTGGATT
i manLeu1.NW_012108508v1       C 0 T 252
s saiBol1.JH378345                250250 20 +    465904 TCCCAAGAGGGAGCTGCTTC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=56331.000000
s hg38.chrX_KI270880v1_alt        182310 40 +    284869 CGAGCCTGCTGTGTAGACG------------------------------------------------GCCATTAG------GTCC--------------------------------------CA----GTCCCAG
s panTro5.chrX                    347489 82 + 155549662 CGAGCCTGCTGTGTAGACA------------------------------------------------GCCATTAG------GTCCTGGGAAGGAGCTGGATTCGAGTCTGCTGCATAGACGGCCATTAGGTCCCGG
i panTro5.chrX                 C 0 T 2319
s panPan2.chrUn_NW_014024190v1     97269 34 -    177848 CGAGCCTGCTGTGTAGACA------------------------------------------------GCCATTAG------GTCCTGG------------------------------------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258473 82 +    417917 CGAGCCTGCTATGTAGATG------------------------------------------------GCTATTAG------GTCCCGGGACGCAGGTGGATCCGAGTCTGCTGCATAGACGGCCATTAGGTCCCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321224 34 + 180051392 CGAGTCAGCTGTGTAGACA------------------------------------------------GCCATTAG------GTCCCAG------------------------------------------------
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70132 34 -     71016 TGAGTCTGCTGTGTAGACA------------------------------------------------GCCATTAG------ATCCTGA------------------------------------------------
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323738 34 +  25972781 TGAGCTTGCTGTGTAGACA------------------------------------------------GACATTAG------GTCCCCA------------------------------------------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227239 82 -   1025902 TGAGCCTGCTGTGTAGACAGACATTAGATCCTGAGACGGAGCTGCATCCAACTTTGCTGTGTAGACGGCCATTAG------GTCCCAG------------------------------------------------
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184674 40 -    350446 CAAGTCTGCTGTGTAGACG------------------------------------------------GCCATTAGGTCCCAGTCCCAG------------------------------------------------
i manLeu1.NW_012108508v1       T 252 C 0
s saiBol1.JH378345                250270 34 +    465904 TGAGCTTGCTGTGTAGACG------------------------------------------------GCCATGAG------ATCCCGG------------------------------------------------
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=47415.000000
s hg38.chrX_KI270880v1_alt        182350 18 +    284869 GATGGAGCTGGAGTCGAG
s panTro5.chrX                    345252 18 + 155549662 GATGGAGCTGGATTTGAG
i panTro5.chrX                 T 2319 C 0
s panPan2.chrUn_NW_014024190v1     97303 18 -    177848 GAAGGAGCTGGATTCGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258555 18 +    417917 GATGGAGCTGCATCCGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321258 18 + 180051392 GACAGAGCTGGATTCGAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70166 18 -     71016 GACGGAGCTGCATCTGAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323772 18 +  25972781 GACACAGCTGCTTCCGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227321 18 -   1025902 GACGGAGCTGGATTCGAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184714 18 -    350446 GATGGAAATGGATTCGAG
i manLeu1.NW_012108508v1       C 0 I 48
s saiBol1.JH378345                250304 18 +    465904 GACAGACCTGTATGTGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=80325.000000
s hg38.chrX_KI270880v1_alt        182368 23 +    284869 CCTGCTGTGTAGACGGCCATTAG
s panTro5.chrX                    345270 23 + 155549662 CCTGCTGTGTAGACGGCCGTTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97321 23 -    177848 CCTGCTGTGTAGACAGCCATTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258573 23 +    417917 CCTGCTGTGTAGACAGCCATTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321276 23 + 180051392 CCTCCTGTGTAGACAGACATTAG
i rheMac8.chr6                 C 0 I 48
s macFas5.chrUn_KE146020           70184 23 -     71016 TCTGCTGTGTAGACAGCCATTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323790 23 +  25972781 CCTGCTGTGTAGACAGACATTAG
i macNem1.NW_012017243v1       C 0 T 372
s cerAty1.NW_012001098v1          227339 23 -   1025902 TCAGCTGTGTAGACAGCCATTAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184780 23 -    350446 TCTGCTGTGTAGACAGACATTAG
i manLeu1.NW_012108508v1       I 48 C 0
s saiBol1.JH378345                250322 23 +    465904 CCTGCTGTGTAGATGGTCATGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=30907.000000
s hg38.chrX_KI270880v1_alt        182391 18 +    284869 GTCCCAGTCCCAGGATGG
s panTro5.chrX                    345293 18 + 155549662 GTCCCAGTCCCAGGATGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97344 12 -    177848 ------GTCCTGGGATGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258596 18 +    417917 GTCCCAGTCCCGGGATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321347 18 + 180051392 GTCCCAGTCCCAGGATGG
i rheMac8.chr6                 I 48 C 0
s macFas5.chrUn_KE146020           70207 18 -     71016 GTCCCAGTCCCAGGACGG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227362 12 -   1025902 ------GTCCCAAGACAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184803 12 -    350446 ------CTCCCGGGACGG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250345 12 +    465904 ------ATCCCGGGACAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323813 372 +  25972781 T

a score=80625.000000
s hg38.chrX_KI270880v1_alt        182409 25 +    284869 AGCTGGATTCGAG-CCTGCTATGTAG
s panTro5.chrX                    345311 25 + 155549662 AGCTGGATTCGAG-CCTGCTATGTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97356 25 -    177848 AGTTGGATTCGAG-CCTGCTGTGTAG
i panPan2.chrUn_NW_014024190v1 C 0 T 192
s gorGor5.CYUI01015925v1          258614 26 +    417917 AGCTGGAGTCGAGCCCTGCTATGTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321365 25 + 180051392 AGCTGGATTCGAG-CCTGCTGTGTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70225 25 -     71016 AGCTGGATTTAAG-CCTGCTGTGTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323441 25 +  25972781 AGCTGGATGCGAG-TCTGCTGTGTAG
i macNem1.NW_012017243v1       T 372 C 0
s cerAty1.NW_012001098v1          227374 25 -   1025902 AGCTGCATCCGAG-TCTGCTGTGTAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184815 25 -    350446 AGCTGCATCCGAG-CCTGCTATGTAG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250357 25 +    465904 ACCTGTATCCCAG-CCTGCTGTGTAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=156265.000000
s hg38.chrX_KI270880v1_alt        182434 50 +    284869 ATGGCTATTAGGTCCCGGGATGCAGCTACATCTGAGCCTGCTGCATAGAC
s panTro5.chrX                    345336 50 + 155549662 ATGGCTATTAGGTCCCGGGATGCAGCTACATCTGAGCCTGCTGCATAGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97189 50 -    177848 ACAGCCATTAGGTCCCGGGACGGAGCTGGATTCGAGCCTGCTGTGTAGAC
i panPan2.chrUn_NW_014024190v1 T 192 C 0
s gorGor5.CYUI01015925v1          258640 50 +    417917 ATGGCCATTAGGTCCCAGGACGCAGGTGGATCTGAGCCTGCTGCATAGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321390 50 + 180051392 ACAGCCATTAGCTCCCGGGACGGAGCTGCATCCGAGTCTGCTGTGTTGAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70250 50 -     71016 ACAGACATTAGGTCCCAAGACACAGCTGCATCCGAGCCTGCTGTGTAGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323466 50 +  25972781 ACGGCCATTAGGTCCCAGGACGGAGCTGGATTCGAGTCTGCTGTGTAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227399 50 -   1025902 GCGGCCATTAGGTCCCAGGACGGAGCTGGATTTGAGCCTGCTGTGTAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184840 50 -    350446 ACAGCCATTAGGTCCCAAGACACAGCTGCATCCGAGCCTGCTGTGTAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250382 50 +    465904 ATGGCCATTAGGTCCCGGGATGGAGCTGCCTCTGAGCCTGCCATGTAGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176626  0 -    811265 C
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=28737.000000
s hg38.chrX_KI270880v1_alt        182484 8 +    284869 GGCCATTA
s panTro5.chrX                    345386 8 + 155549662 GGCCATTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97239 8 -    177848 AGCCATTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258690 8 +    417917 GGCCATTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321440 8 + 180051392 GGCCATTA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70300 8 -     71016 AGACATTA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323516 8 +  25972781 AGACATTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227449 8 -   1025902 AGACATTA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176626 8 -    811265 GGCCCTTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184890 8 -    350446 GGCCATTA
i manLeu1.NW_012108508v1       C 0 I 204
s saiBol1.JH378345                250432 8 +    465904 AGCCATGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=22018.000000
s hg38.chrX_KI270880v1_alt        182492 6 +    284869 AGTCCT
s panTro5.chrX                    345394 6 + 155549662 GGTCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97247 6 -    177848 GGTCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258698 6 +    417917 GGTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321448 6 + 180051392 GGTCCT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70308 6 -     71016 GATCCT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323524 6 +  25972781 GGTCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227457 6 -   1025902 GGTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176634 6 -    811265 TGTCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185102 6 -    350446 AGTCCC
i manLeu1.NW_012108508v1       I 204 C 0
s saiBol1.JH378345                250440 6 +    465904 GATCCT
i saiBol1.JH378345             C 0 T 336
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=50662.000000
s hg38.chrX_KI270880v1_alt        182498 12 +    284869 GGGACGGAGCTG
s panTro5.chrX                    345400 12 + 155549662 GGGACGGAGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97253 12 -    177848 GGGATGGAGTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258704 12 +    417917 AGGATGGAGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321454 12 + 180051392 GGGATGGAACTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70314 12 -     71016 GAGACGGAGCTG
i macFas5.chrUn_KE146020       C 0 T 198
s macNem1.NW_012017243v1          323530 12 +  25972781 GGGACGGAGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227463 12 -   1025902 GGGACAGAACTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176640 12 -    811265 GGGACTGAGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185108 12 -    350446 AGGACGGAGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250110 12 +    465904 GGGACGGAGCTG
i saiBol1.JH378345             T 336 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=8760.000000
s hg38.chrX_KI270880v1_alt        182510 3 +    284869 CAT
s panTro5.chrX                    345412 3 + 155549662 CAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97265 3 -    177848 GAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258716 3 +    417917 GAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321466 3 + 180051392 GAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70128 3 -     71016 GAT
i macFas5.chrUn_KE146020       T 198 C 0
s macNem1.NW_012017243v1          323542 3 +  25972781 CAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227475 3 -   1025902 GAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176652 3 -    811265 CAT
i chlSab2.chrUn_KE147541v1     C 0 T 430
s manLeu1.NW_012108508v1          185120 3 -    350446 GAT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250122 3 +    465904 CAT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=52003.000000
s hg38.chrX_KI270880v1_alt        182513 16 +    284869 TGGACCCTGCTGTGTA
s panTro5.chrX                    345415 16 + 155549662 TGGACCCTGCTGTGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97268 16 -    177848 TCGAGCCTGCTGTGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258719 16 +    417917 TCGAGCCTGCTGTGTA
i gorGor5.CYUI01015925v1       C 0 I 1655
s rheMac8.chr6                 143321469 16 + 180051392 TTGAGTCTGCTGTGTA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70131 16 -     71016 TTGAGTCTGCTGTGTA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323545 16 +  25972781 CTGAGTCTGCTGTGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227478 16 -   1025902 TTGAGCCTGCTGTGTA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185123 16 -    350446 TCGAGTCAGCTGTGTA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250125 16 +    465904 ATGAGCCTGCTGTGTA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176655 430 -    811265 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=14878.000000
s hg38.chrX_KI270880v1_alt        182529 7 +    284869 GACAGCT
s panTro5.chrX                    345431 7 + 155549662 GACAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97284 7 -    177848 GACAGCC
i panPan2.chrUn_NW_014024190v1 C 0 T 1688
s gorGor5.CYUI01015925v1          260390 7 +    417917 GACGGCC
i gorGor5.CYUI01015925v1       I 1655 C 0
s rheMac8.chr6                 143321485 4 + 180051392 GACA---
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70147 7 -     71016 GACAGCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323561 7 +  25972781 CATGGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227494 7 -   1025902 GACAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185139 7 -    350446 GACAGCT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250141 7 +    465904 GACAGCC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176655 430 -    811265 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=49668.000000
s hg38.chrX_KI270880v1_alt        182536 22 +    284869 ATTAGGTCCCGGGATGCAGCTA
s panTro5.chrX                    345438 22 + 155549662 TTTAGGTCCCGGGATGTAGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95603 22 -    177848 ATTAGGTCCTGGGACGGAGCTG
i panPan2.chrUn_NW_014024190v1 T 1688 C 0
s gorGor5.CYUI01015925v1          260397 22 +    417917 ATTAGGTCCCGGGAGGGAGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70154 22 -     71016 ATTAGATCCTGAGACGGAGCTG
i macFas5.chrUn_KE146020       C 0 I 150
s macNem1.NW_012017243v1          323568 22 +  25972781 ATTAGGTCCCAAGACACAGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227501 22 -   1025902 ATTAGATCCTGAGACGGAGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185146 22 -    350446 ATTAGGTCCCAAGACACAGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250148 22 +    465904 ATGAGATCCTGGGGTGAAACTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176655 430 -    811265 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321489  0 + 180051392 C

a score=8912.000000
s hg38.chrX_KI270880v1_alt        182558 5 +    284869 CATCT
s panTro5.chrX                    345460 5 + 155549662 CATCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95625 5 -    177848 CATTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260419 5 +    417917 GATTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70326 5 -     71016 CATCC
i macFas5.chrUn_KE146020       I 150 C 0
s macNem1.NW_012017243v1          323590 5 +  25972781 CATCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227523 5 -   1025902 CATCT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185168 5 -    350446 CATCC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250170 5 +    465904 CATCA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176655 430 -    811265 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321489 0 + 180051392 C

a score=42232.000000
s hg38.chrX_KI270880v1_alt        182563 14 +    284869 GAGCCTGCTGCATG
s panTro5.chrX                    345465 14 + 155549662 GAGCCTGCTGTGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95630 14 -    177848 GACCCTGCTGTGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260424 14 +    417917 GAGCCTGCTGCATA
i gorGor5.CYUI01015925v1       C 0 T 1703
s macFas5.chrUn_KE146020           70331 14 -     71016 AAGTTTGCTGTGTA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323595 14 +  25972781 GAGTGTGCTGTGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227528 14 -   1025902 GAGTCTGCTGTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176225 14 -    811265 GAGCCTGCTGTGTA
i chlSab2.chrUn_KE147541v1     T 430 C 0
s manLeu1.NW_012108508v1          185173 14 -    350446 GAGTCTGCTGCATA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250175 14 +    465904 GATCCTGCTGTGTA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321489  0 + 180051392 C

a score=124608.000000
s hg38.chrX_KI270880v1_alt        182577 37 +    284869 GACGGCCATTAG------GTCCTGGGATGGAGCTGCATTGGAC
s panTro5.chrX                    345479 37 + 155549662 GATGGCCATTAG------GTCCTGGGACGGAGCTGCATTGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95644 37 -    177848 GACAGCCTTTAG------GTCCCGGGATGTAGCTGCATCCGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258735 43 +    417917 GACGGCCATTAGGTCCCAGTCCCAGGATGGAGCTGGATTCGAG
i gorGor5.CYUI01015925v1       T 1703 C 0
s rheMac8.chr6                 143321489 33 + 180051392 ----GCCATTAG------ATCCTGAGACGGAGCTGCATCTGAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70345 37 -     71016 GACGGCCATTAG------GTCCCGGGAAGGAGCTGGATTCGAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323609 37 +  25972781 GACAGCCATTAG------GTCCCAGGACGGAACTGGATTCGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227542 37 -   1025902 GACGGCCATTAG------CTCCCGGAATGGAGCTGGATTCGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176239 37 -    811265 GACAGACATTAG------GTCCCTGGACGGAGCTGGATCCGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185187 37 -    350446 GACGGCCATTAG------GTCCTGAGATGCAGCTGGATTGGAG
i manLeu1.NW_012108508v1       C 0 T 492
s saiBol1.JH378345                250189 37 +    465904 GACAGCCATTAG------CTCCTGGGAGGGTGCTGCATCAGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=80078.000000
s hg38.chrX_KI270880v1_alt        182614 19 +    284869 CCTGCTGTGTAGACAGCCA
s panTro5.chrX                    345516 19 + 155549662 CATGCTGTGTAGACAGCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95681 19 -    177848 CCTGCTGTGTAGACGGCCA
i panPan2.chrUn_NW_014024190v1 C 0 I 1607
s gorGor5.CYUI01015925v1          258778 19 +    417917 CCTGCTGTGTAGATGGCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321522 19 + 180051392 TCTGCTGTGTAGACAGCCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70382 19 -     71016 TCAGCTGTGTAGACAGCCA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323646 19 +  25972781 CCTGCTGTGTAGACAGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227579 19 -   1025902 CCTGCTGTGTAGACAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176276 19 -    811265 CCTGCTGTGTAGACAGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184732 19 -    350446 CCTGCTGTGTAGACAGACA
i manLeu1.NW_012108508v1       T 492 C 0
s saiBol1.JH378345                250226 19 +    465904 CCTGCTGTGTAGACAGTCA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=30517.000000
s hg38.chrX_KI270880v1_alt        182633 9 +    284869 TTAGGTCCC
s panTro5.chrX                    345535 9 + 155549662 TTAGGTCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258797 9 +    417917 TTAGGTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321541 9 + 180051392 TTAGGTCCC
i rheMac8.chr6                 C 0 T 438
s macFas5.chrUn_KE146020           70401 9 -     71016 TTAGGTCCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323665 9 +  25972781 TTAGGTCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227598 9 -   1025902 TTAGGTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176295 9 -    811265 TTAGATCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184751 9 -    350446 TTAGCTCCC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250245 9 +    465904 CTGTGTCCC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e panPan2.chrUn_NW_014024190v1     95700 1607 -    177848 I

a score=11420.000000
s hg38.chrX_KI270880v1_alt        182642 6 +    284869 GGGATG
s panTro5.chrX                    345544 6 + 155549662 GGGATG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258806 6 +    417917 GGGATG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321112 6 + 180051392 CAGACA
i rheMac8.chr6                 T 438 C 0
s macFas5.chrUn_KE146020           70410 6 -     71016 AAGATA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323674 6 +  25972781 GGGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227607 6 -   1025902 AAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176304 6 -    811265 GAGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184760 6 -    350446 GGGACG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250254 6 +    465904 AAGAGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e panPan2.chrUn_NW_014024190v1     95700 1607 -    177848 I

a score=153350.000000
s hg38.chrX_KI270880v1_alt        182648 43 +    284869 CAGCTGCATCTGAGTCTGCTGCATAGATGGCCATTAG------ATCCTG
s panTro5.chrX                    345550 43 + 155549662 CAGCTACATCTGAGCCTGCTGCATAGACGGCCATTAA------GTCCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97307 43 -    177848 GAGCTGGATTCGAGCCTGCTGTGTAGACAGCCATTAG------GTCCTG
i panPan2.chrUn_NW_014024190v1 I 1607 C 0
s gorGor5.CYUI01015925v1          258812 43 +    417917 CAGGTGGATCCGAGTCTGTTGCATAGACGGCCATTAG------GTCCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321118 43 + 180051392 CAGCTGCTTCCGAGCCTGCTGTGTAGACAGACATTAG------ATCCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70416 43 -     71016 CAGCTGCATCCGAGTCTGCTGCATAGACGGCCATTAG------GTCCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323680 43 +  25972781 GAGCTGCATCTGAGTCTGCTGTGTGGATGGCCATTAG------CTCCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227613 49 -   1025902 CAGCTACATCCAAGTCTGCTGTGTAGACGGCCATTAGGTCCCAGTCCCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176310 43 -    811265 GAGCTGCATCCAAGTTTGCTGTATAGACGGTCATTAG------GTCCCG
i chlSab2.chrUn_KE147541v1     C 0 I 1136
s manLeu1.NW_012108508v1          184766 43 -    350446 GAGCTGCATCCGAGTCTGCTGTGTAGACAGACATTAG------CTCCCG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250260 43 +    465904 GAGCTGCTTCTGAGCTTGCTGTGTAGACGGCCATGAG------ATCCCG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=95106.000000
s hg38.chrX_KI270880v1_alt        182691 31 +    284869 GGACGGAGCTGCATTGGACCCTGCTGTGTAG
s panTro5.chrX                    345593 31 + 155549662 GGACGGAGCTGCATTGGACCCTGCTGTGTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97350 31 -    177848 GGATGGAGTTGGATTCGAGCCTGCTGTGTAG
i panPan2.chrUn_NW_014024190v1 C 0 T 1495
s gorGor5.CYUI01015925v1          258855 31 +    417917 GGACGGAGCTGGAGTGGAGCCTGCTGTGTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321161 31 + 180051392 AGATGGAGCTGCATCCAAGTTTGCTGTGTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70459 31 -     71016 GGATGCAGCTGGATTCGAGCCTGCTGTGTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323723 31 +  25972781 GGACAGAGCTGGGTTTGAGCTTGCTGTGTAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227662 31 -   1025902 GGATGGAGCTGGATTCGAGCCTGCTGTGTAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184809 31 -    350446 GGACGGAGCTGCATCCGAGCCTGCTATGTAG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250303 31 +    465904 GGACAGACCTGTATGTGAGCCTGCTGTGTAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=17766.000000
s hg38.chrX_KI270880v1_alt        182722 9 +    284869 ACAGCCATT
s panTro5.chrX                    345624 9 + 155549662 ACAGCCATT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258886 9 +    417917 ATGGCTGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321192 9 + 180051392 ACAGCCATT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70490 9 -     71016 ACGGCCCTT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323754 9 +  25972781 ACAGACATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227693 9 -   1025902 ACAGACATT
i cerAty1.NW_012001098v1       C 0 T 2659
s manLeu1.NW_012108508v1          184840 9 -    350446 ACAGCCATT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250334 9 +    465904 ATGGTCATG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=23176.000000
s hg38.chrX_KI270880v1_alt        182731 11 +    284869 AGGTCCCAGGA
s panTro5.chrX                    345633 11 + 155549662 AGGTCCCGGGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258895 11 +    417917 AGGTCCCGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321201 11 + 180051392 AGGTCCCGGGA
i rheMac8.chr6                 C 0 T 2314
s macFas5.chrUn_KE146020           70499 11 -     71016 ATGTCCCGGGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323763 11 +  25972781 AGGTCCCCAGA
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1          184849 11 -    350446 AGGTCCCAAGA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250343 11 +    465904 AGATCCCGGGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=26265.000000
s hg38.chrX_KI270880v1_alt        182742 21 +    284869 TGTGGCTGCATCTGAGCCTGC
s panTro5.chrX                    345644 21 + 155549662 TGTAGCTGCATCCGAGCCTGC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258906 21 +    417917 TGCAGCTGCATCCGAGCCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70510 19 -     71016 CGGAGCTGCATCT--GCCTGC
i macFas5.chrUn_KE146020       C 0 T 3057
s macNem1.NW_012017243v1          323774 21 +  25972781 CACAGCTGCTTCCGAGCCTGC
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1          184860 21 -    350446 CACAGCTGCATCCGAGCCTGC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250354 21 +    465904 CAGACCTGTATCCCAGCCTGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                262325  2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=5730.000000
s hg38.chrX_KI270880v1_alt        182763 4 +    284869 TGTG
s panTro5.chrX                    345665 4 + 155549662 TGTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258927 4 +    417917 TGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          323795 4 +  25972781 TGTG
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1          184881 4 -    350446 TGTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250375 4 +    465904 TGTG
i saiBol1.JH378345             C 0 T 1477
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macFas5.chrUn_KE146020           70529 3057 -     71016 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=4730.000000
s hg38.chrX_KI270880v1_alt        182767 5 +    284869 TAGAC
s panTro5.chrX                    345669 5 + 155549662 TAGAC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258931 5 +    417917 TAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1          323799 5 +  25972781 TAGAC
i macNem1.NW_012017243v1       C 0 T 628
s manLeu1.NW_012108508v1          184885 5 -    350446 TAGAC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macFas5.chrUn_KE146020           70529 3057 -     71016 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=1200.000000
s hg38.chrX_KI270880v1_alt        182772 2 +    284869 GG
s panTro5.chrX                    345674 2 + 155549662 GG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258936 2 +    417917 GG
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1          184890 2 -    350446 GG
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e macFas5.chrUn_KE146020           70529 3057 -     71016 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=2000.000000
s hg38.chrX_KI270880v1_alt        182774 2 +    284869 CC
s panTro5.chrX                    345676 2 + 155549662 CC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258938 2 +    417917 CC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67472 2 -     71016 CC
i macFas5.chrUn_KE146020       T 3057 C 0
s manLeu1.NW_012108508v1          184892 2 -    350446 CC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262325 2 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=1365.000000
s hg38.chrX_KI270880v1_alt        182776 1 +    284869 A
s panTro5.chrX                    345678 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258940 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67474 1 -     71016 A
i macFas5.chrUn_KE146020       C 0 C 0
s manLeu1.NW_012108508v1          184894 1 -    350446 A
i manLeu1.NW_012108508v1       C 0 T 5693
s otoGar3.GL873584                262327 1 +  11138919 A
i otoGar3.GL873584             I 2 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=25766.000000
s hg38.chrX_KI270880v1_alt        182777 59 +    284869 AAATAAATAACAAAACTGTGTTGGCAGGCGGTGACCGACAGACGAACCACTGGG-CTCTC
s panTro5.chrX                    345679 59 + 155549662 AAATAAGTAACAAAACCGTGTTGGCAGGCGGTGACCGACGGACGAACCACTGGG-CTCTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258941 60 +    417917 AAATAAATAACAAAACTGTGTTGGCAGGCGGTGACCGACAGACGAACCACTGGGCCTCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67475 59 -     71016 AAATAAATAACAGAAGTGCGTTGGCAGGTGGGGACCGACGTAGAAACCACTGGT-TTCTA
i macFas5.chrUn_KE146020       C 0 I 7
s otoGar3.GL873584                262328 51 +  11138919 AAATAAATAAATAAGC------GGCCGAAG--GACGGCCACGCGGGGCATTTAA-CCGTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          184895 5693 -    350446 T
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e cerAty1.NW_012001098v1          227702 2659 -   1025902 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143321212 2314 + 180051392 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=103962.000000
s hg38.chrX_KI270880v1_alt        182836 86 +    284869 ATCCCGGCCGGCCCTTTG-AGTTGTTTAAGTTCCTCTTGTACTTGAATTGTTT------CCCCAGAACGAGGTGGATCAAAGTGTCATAC-AGT
s panTro5.chrX                    345738 86 + 155549662 ATCCCAGCCGGCCCTTTG-AGTTGTTTAAGTTCCTCTTGTACTTGAATTGTTT------CCCCAGAACGAGGGGGATCAAAGTGTCATAC-AGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          259001 86 +    417917 ATCCCGGCCGGCCCTTTG-AGTTGTTTAAGTTCCTCTTGTACTTGAATTGTCT------CCCCAGAACGAGGTGGATCAAAGTGTCATAC-AGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318898 85 + 180051392 ATCCTGGCCGGCCCTTGG-AGCTGTTTACATTCCTTTTCTATGTGAATTGTTT-------TCCAGAACGAGGTAAATCACAGTGTCCTAC-GGT
i rheMac8.chr6                 T 2314 I 5
s macFas5.chrUn_KE146020           67541 85 -     71016 ATCCTGGCCGGCCCTTGG-AGCTGTTTACATTCCTTTTCCATGTGAATTGTTT-------TCCAGAACGAGGTAAATCACAGTGTCCTAC-GGT
i macFas5.chrUn_KE146020       I 7 I 5
s cerAty1.NW_012001098v1          225043 86 -   1025902 ATCCTGGCCGGCCCTTGG-AGTTGTTTACATTCCTTTTCTATGTGAATTGTTT-------CCCAGAACGAGGTAAATCACAGTGCCTTACGGGT
i cerAty1.NW_012001098v1       T 2659 I 5
s otoGar3.GL873584                262379 93 +  11138919 TGCGTGGCCGGGCCTTTGAAGCGGTTTAACTCCGTCTTGTACTTGGCTAGTGTCACGGTCCCCAGAACAAAGTAAATCAAAGTCTAATCG-AGT
i otoGar3.GL873584             C 0 I 4
e manLeu1.NW_012108508v1          184895 5693 -    350446 T
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=46172.000000
s hg38.chrX_KI270880v1_alt        182922 23 +    284869 AACAGCCCAGACAGACGATAGGT
s panTro5.chrX                    345824 23 + 155549662 AACAGCCCAGACAGAGGATAGGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          259087 23 +    417917 AACAGCCCAGACAGAGGATAGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143318988 23 + 180051392 AACAGCCCAGACAGAGGAGAGGT
i rheMac8.chr6                 I 5 C 0
s macFas5.chrUn_KE146020           67631 23 -     71016 AACAGCCCAGACAGAGGAGAGGT
i macFas5.chrUn_KE146020       I 5 C 0
s cerAty1.NW_012001098v1          225134 23 -   1025902 AACAGCCCAGACAGAGGGTAGGT
i cerAty1.NW_012001098v1       I 5 C 0
s manLeu1.NW_012108508v1          179202 23 -    350446 AACAGCCCAGACAGAGGGTAGGT
i manLeu1.NW_012108508v1       T 5693 C 0
s otoGar3.GL873584                262476 23 +  11138919 AATAGCGCGTGCCGCAGACAGGT
i otoGar3.GL873584             I 4 I 38
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=32808.000000
s hg38.chrX_KI270880v1_alt        182945 19 +    284869 ATGGCAGaaaagaaaaaaa
s panTro5.chrX                    345847 19 + 155549662 ATGGCAGaaaagaaaaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          259110 19 +    417917 ATGGCAGaaaagaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319011 19 + 180051392 GTGGCaaaaaagaaaaaag
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           67654 19 -     71016 GTGGCaaaaaagaaaaaag
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225157 19 -   1025902 GTGGCaaaaaagaaaaaag
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          179225 19 -    350446 GTGGCaaaaaagaaaaaag
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262499 38 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e panPan2.chrUn_NW_014024190v1     97381 1495 -    177848 T

a score=-6703.000000
s hg38.chrX_KI270880v1_alt        182964 2 +    284869 --ct
s panTro5.chrX                    345866 2 + 155549662 --ct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95886 2 -    177848 --ct
i panPan2.chrUn_NW_014024190v1 T 1495 C 0
s gorGor5.CYUI01015925v1          259129 2 +    417917 --gt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319030 2 + 180051392 ga--
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           67673 2 -     71016 ga--
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225176 2 -   1025902 ga--
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          179244 2 -    350446 ga--
i manLeu1.NW_012108508v1       C 0 I 2
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262499 38 +  11138919 I
e chlSab2.chrUn_KE147541v1        176353 1136 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=73607.000000
s hg38.chrX_KI270880v1_alt        182966 38 +    284869 aaaaaaaaa-----aaaaaaaaaaaaaaTCGCATGGGAAGTTT
s panTro5.chrX                    345868 31 + 155549662 aaaaaaaaa-----aaaaaaa-------TCGCATGGGAAGTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95888 35 -    177848 aaaaaaaaa-----aaaaaaa---aaaTACTTATGGGAAGTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259131 33 +    417917 aaaaaaaaa-----aaaaaaa-----aaTCGCAGGGGAAGTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319032 42 + 180051392 -aaaaaaaaaagaaaagaagaaaaagaaTGGCATGGGAAGTGT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           67675 42 -     71016 -aaaaaaaaaaaagaagaagaaaaagaaTGGCATGGGAAGTGT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225178 37 -   1025902 -aaaaaaaa-----aagaagaaaaagaaTGGCATGGGAAGTGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        177489 38 -    811265 aaaaaaaaa-----aagaagaaaaagaaTGGCATGGGAAGTGT
i chlSab2.chrUn_KE147541v1     I 1136 C 0
s manLeu1.NW_012108508v1          179248 38 -    350446 aaaaaaaaa-----aagaagaaaaagaaTGGCATGGGAAGTGT
i manLeu1.NW_012108508v1       I 2 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                262499 38 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=687556.000000
s hg38.chrX_KI270880v1_alt        183004 229 +    284869 CCCCGCC-----------TCCTCTTTGGCCATTCTGTGCCCGGAGATCAAAGTTCTCATTTCAGCTCTAATTAAGAAAAACTAACACAGAGCCAAGGCCTTCTGGCTCCGAAGAGGGCCTTTGGTGGA--TCACTGCTG--AAATCTTCCCGAGATTTAAATAATTAATATGACACCTTGAGCT-CTGCACGGAGAAATT----------aaaaa-aaaa--aaaaacaaaaa-------aGGGAAAGGGAAAGGGGAGGAAGGG
s panTro5.chrX                    345899 228 + 155549662 CCCCGCC-----------TCCTCTTTGGCCATTCTGTGCCCGGAGATCAAAGTTCTCATTTCAGCTCTAATTAAGAAAAACTAACACAGAGCCAAGGCCTTCTGGCTCCGAAGAGGGCCTTTGGTGGA--TCGCGGCTG--AAATCTTCCTGAGATTTAAATAATTAATATGACACCTTGAGCT-CTGCACGGAGAAATT----------AAAAA-AACA--AAAA-CAAAAA-------AGGGAAAGGGAAAGGGGAGGAAGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     95923 230 -    177848 CCCCGCC-----------TCCTCTTTGGCCATTCTGTGCCCGGAGATCAAAGTTCTCATTTCAGCTCTAATTAAGAAAAACTAACACAGAGCCAAGGCCTTCTGGCTCCGAAGAGGGCCTTTGGTGGA--TCGCGGCTG--AAATCTTCCTGAGATTTAAATAATTAATATGACACCTTGAGCT-CTGCACGGAGAAATT----------AAAAACAAAA--CAAAACAAAAA-------AGGGAAAGGGAAAGGGGAGGAAGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259164 229 +    417917 CCCCGCC-----------TCCTCTTTGGCCATTCTGTTCCTGGAGATCAAAGTTCTCATTTCAGCTCTAATTAAGAAAAACTAACACAGAGCCGAGGCCTTCTGGCTCCGAAGAGGGCCTTTGGTGGA--TCGCGGCTG--AAATCTTCCCGAGGTTTAAATAATTAATATGACACCTTGAGCT-CCGCACGGAGAAATT----------aaaaa-aaaaacaaaaacaaaaa-------aGGGAAAGGGAAAGGGGAG--AAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319074 226 + 180051392 CTCCGCC-----------TTCTCTCTGTCCATTCCGTGCCGGGAGATCAAAGTTCCTACTTCAGCTGTAATTAAGAAAAAGTAACAGAGATCCGAGGCCTTCTGGCTCCGAGCAGGGCC-TTGGTGGATCTCGCTGCTGAAAAATCTTCCCAAGATTTAAATAATTAATATGACACCTTGAGCTCCCGCACGGAGACATT----------aaaaa-------aaaaaaaaaaa----------aaaaGGGAACGGGGAGGAAGGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           67717 225 -     71016 CTCCGCC-----------TTCTCTCTGTCCATTCCGTGCCGGGAGATCAAAGTTCCTACTTCAGCTGTAATTAAGAAAAAGTAACAGAGATCCGAGGCCTTCTGGCTCCGAGCAGGGCC-TTGGTGGATCTCGCTGCTGAAAAATCTTCCCAAGATTTAAATAATTAATATGACACCTTGAGCTCCCGCACGGAGACATT-----------aaaa-------aaaaaaaaaaa----------aaaaGGGAACGGGGAGGAAGGG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225215 236 -   1025902 CTCCGCC-----------TTCTCTCTGTCCATTCCGTGCCGGGAGATCAAAGTTCCCACTTCAGCTGTAATTAAGAAAAAGTAACCGAGATCCGAGGCCTTCTGGCTCCGAACAGGGCC-TTGGTGGATCTCGCTGCTGAAAAATCTTCCCAAGATTTAAATAATTAATATGACACCTTGAGCTCCCGCACGGAGACATTaaaaaaaaccaaaaa-------aaaaacaaaaa----------aaaaGGGAATGGGGAGGAAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        177527 236 -    811265 CTCCGCC-----------TTCTCACTGTCCGTTCTGTGCCGGGAGATCAAAGTTCCCACTTCAGCTGTAATTAAGAAAAAATAACAGAGATCCCAGGCCTTCTGGCTCCGAACAGGGCC-TTGGTGGATCTCGCTGCTGAAAAATCTTCCCAAGATTTAAATAATTAATATGACACCTTGAGCTCCCGCACGGAGACATT----------aaaaa-------aaaaaaaaaaagaaaaagaagaaaagggaacggggaggaaggg
i chlSab2.chrUn_KE147541v1     C 0 I 148
s manLeu1.NW_012108508v1          179286 229 -    350446 CTCCGCC-----------TTCTCTCTGTCCATTCTGTGCCGGGAGATCAAAGTTCCCACTTCAGCTGTAATTAAGAAAAAGTAACCGAGATCCGAGGCCTTCTGGCTCCGAACAGGGCC-CTGGTGGATCTCGCAGCTGAAAAATCTTCCCAAGATTTAAATAATTAATATGACACCTTGAGCTCCCGCACGGAAACATT----------aaaaa-------aaaaacaaaaa-------aaaaaaaGGGAACGGGGAGGAAGGG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584                262537 231 +  11138919 CCTCGCCCCTTCTTGTTTTTCTCCCTGGCTATTCTATTCATGGAGATCAAAGTTCTTGTTTCAGCTCTAATTAAGAAAAACTAACAGGGACGCGGGGCCTTCTGGCACCGATCAGGGCC-TCGGAGGA--TAACTGCTG--AAATCTTCCAAAGATTTAAATAATTAATATGACACCTTGAGCT-CCGAATGGGGAAATT----------AAAAA-------GAGGGGGGAAA----------AAAAGGCGGAGGAGAGGGGGT-
i otoGar3.GL873584             I 38 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=35686.000000
s hg38.chrX_KI270880v1_alt        183233 12 +    284869 GGCCCCGTGTCG
s panTro5.chrX                    346127 12 + 155549662 GGCCCCGTGTCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96153 12 -    177848 GGCCCCGTGTCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259393 12 +    417917 GGCCCCGTGTCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319300 12 + 180051392 AGCCCCGTGTCG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           67942 12 -     71016 AGCCCCGTGTCA
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225451 12 -   1025902 AGCCCCATGTCG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          179515 12 -    350446 AGCCCCGTGTCG
i manLeu1.NW_012108508v1       C 0 M 4725
s otoGar3.GL873584                262768 12 +  11138919 GGCCCTGTGTTG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        177763 148 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=29694.000000
s hg38.chrX_KI270880v1_alt        183245 30 +    284869 GAGCGGGGAACAA---TGGGATTGAGG--ATATGG
s panTro5.chrX                    346139 28 + 155549662 GAGCGGGGAACAA---TGGGATTGAGG--AT--GG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96165 28 -    177848 GAGCGGGGAACAA---TGGGATTGAGC--AT--GG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259405 28 +    417917 GAGCTGGGAACAA---TGGGATTGAGG--AT--GG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319312 30 + 180051392 AAGGGGAAAACAA---TAGGGCAGAGATCAT--GG
i rheMac8.chr6                 C 0 I 103
s macFas5.chrUn_KE146020           67954 30 -     71016 AAGGGGAAAACAA---TAGGGCAGAGATCAT--GG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          225463 30 -   1025902 AAGGGGAAAACAA---TAGGGCAGAGATCAT--GG
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584                262780 31 +  11138919 GAGTTTTGAACAAAGCCGGGGCCAGAA--TT--GG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        177763 148 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=93067.000000
s hg38.chrX_KI270880v1_alt        183275 110 +    284869 CAGAGCATTTGTACCCCTGGATGCGTGCAGCCCTCCTTTGTCATGCTAAAGGGGAACCTTTATTTTCTGTG-GTCACCCCGGGTGCTCA-------------GAG-CCTCTAGGAGGATCCTT-TC
s panTro5.chrX                    346167 111 + 155549662 CAAAGCATTTGTACCCCTGGATGCGTGCAGCCCTCCTTTGTCATGCTAAAGGGGAACCTTTATTTTCCGTG-GTCACCCCGGGTGCTCA-------------GAG-CCTCTAGGAGGATCCTTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96193 111 -    177848 CAAAGCATTTGTACCCCTGGATGCGTGCAGCCCTCCTTTGTCATGCTAAAGGGGAACCTTTATTTTCCGTG-GTCACCCCGGGTGCTCA-------------GAG-CCTCTAGGAGGATCCTTGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259433 109 +    417917 CAGAGCATTTGTACCCCTGGATGCGTGCAGCCCTCC-TTGTCATGCTAAAGAGGAACTTTTA-TTTCTGTG-GTCACCCCGGGTGCTCA-------------GAG-CCTCTAGGAGGATCCTTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           67984 102 -     71016 ----------GCACCCCGGGGGGCGAACAGTTTGCCTTTCTCATGCTAACGGACACCCTTTGTTTGCTGTACGTCACTCCGGGTACCCG-------------GAGCCCTCTAGAAGGACACGTGC-
i macFas5.chrUn_KE146020       C 0 I 1
s cerAty1.NW_012001098v1          225493 102 -   1025902 ----------GCACCCCGGGGGGCGAACAGTTCCCCTTTCTCATGCTGACGGACACCCTTTATTTTCTGTATGTCACTCCGGGTACCCG-------------GAGCCCTCTAGAAGGATACGTGC-
i cerAty1.NW_012001098v1       C 0 I 1
s otoGar3.GL873584                262811 118 +  11138919 -AAGCCATTTGT-TCCGGGGACGCAGGCGGACT--CTTTGTCATGCTAA--GGAAGCTTTTGTTGGCGCCC-GCCACCCCCAGAGCCGACCCAGTGAGGAAGGAGGCTGCGAGGGAGGTGCGTTT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        177763 148 -    811265 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319342 103 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=297114.000000
s hg38.chrX_KI270880v1_alt        183385 113 +    284869 GGAAAGCAAGTCTGCTGTGGGGAGTTGGAGGACGCTCATTTAATGC-TTTTTAATCCTGTTAATCCCAGGCAGAATGGCCATCCCC-AGCGCAAATCCGGTCCCCAAAGCCCTCC
s panTro5.chrX                    346278 113 + 155549662 AGAAAGCAAGTCTGCTGTGGGGAGTTGGAGGACGCTCATTTAATGG-TTTTTAATCCGGTTAATCCCAGGCAGAATGGCCATCCCC-AGCGCAAATCCGGTCCCCAAAGCCCTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96304 113 -    177848 GGAAAGCAAGTCTGCTGTGGGGAGTTGGAGGACGCTCATTTAATGG-TTTTTAATCCGGTGAATGCCAGGCAGAATGGCCATCCCC-AGCGCAAATCCGGTCCCCAAAGCCCTCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259542 113 +    417917 GGAAAGCGAGTCTGCTGTGGGGAGTTGGAGGACGCTCATTTAATGG-TTTTTAATCCTGTTAATCCCAGGCAGAATGGCCATCCCC-AGCGCAAATCCGGTCCCCAAAGCCCTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319445 113 + 180051392 GGAAAGGAAGTCTGCTGTGGGGAGTGGCACGATGGTCATTTAATGG-TTTTTAATCCTCTTAATCCCGGCAAGAATGGCCATCCCC-AGTGCAAATCCGGTCCCCAAAGCCCTCC
i rheMac8.chr6                 I 103 I 374
s macFas5.chrUn_KE146020           68087 113 -     71016 GGAAAGGAAGTCTGCTGTGGGGAGTGGCACGATGGTCATTTAATGG-TTTTTAATCCTCTTAATCCCGGCAAGAATGGCCATCCCC-AGTGCAAATCCGGTCCCCAAAGCCCTCC
i macFas5.chrUn_KE146020       I 1 I 11
s cerAty1.NW_012001098v1          225596 113 -   1025902 GGAAAGGAAGTCTGCTGTGGGGAGTGGCACGATGGTCATTTAATGG-TTTTTAATCCTCTTAATCCCGGTAAGAAAGGCCATCCCC-AGTGCAAATCCGGTCCCCAAAGCCCTCC
i cerAty1.NW_012001098v1       I 1 I 391
s chlSab2.chrUn_KE147541v1        177911 114 -    811265 GGAAAGGAAGTCTGCTGTGGGGAGTGGCACGATGGTCATTTAATGGTTTTTTAATCCTCTTAATCCCGGCAAGAATGGCCATCCCC-AGCGCAAATCCGGTCCCCAGAGCCCTCC
i chlSab2.chrUn_KE147541v1     I 148 I 88
s otoGar3.GL873584                262929 104 +  11138919 ----------GCTGCTGCTGGGGCTCGGGAGGCGGCCGCTTAATGG-TTTTTAATCCTCCTAATCCGAGCAGGAACGGCCATCCCCGGGCGCAAATCCGGTCCCTGAAGCCCTCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=31274.000000
s hg38.chrX_KI270880v1_alt        183498 44 +    284869 CCGGCTTGCCAGAGCCAGGCTCCCTCCCAGAC---GCTCCCGGGAAG
s panTro5.chrX                    346391 44 + 155549662 CCGGCTCGCCAGAGCCAGGCTCCCTCCGAGAC---GCTCCCGGGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96417 44 -    177848 CCGGCTCGCCAGAGCCAGGCTCCCTCTGAGAC---GCTCCCGGGAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259655 43 +    417917 CCGGCTCGCCAGAGCCAGGCTCCCTC-GAGAC---GCTCCCGGGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68211 41 -     71016 CCGGCTCTCCAGACCCAGG---TCTCCGAGAG---ACACCCGGGAAA
i macFas5.chrUn_KE146020       I 11 C 0
s otoGar3.GL873584                263033 42 +  11138919 ----CGAGCCGGCGCCGGGC-CCCGCACAGCCGCGGCCTCTGAGAAA
i otoGar3.GL873584             C 0 I 28
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        178025 88 -    811265 I
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=45834.000000
s hg38.chrX_KI270880v1_alt        183542 82 +    284869 CATCTCTTCTGCGAGCCGGCCTGTCTCTGTGCTGGGTTCCCGGAGCCATCTGAGCCAGCACAGGCGACGAGAAATTAAAATC
s panTro5.chrX                    346435 82 + 155549662 CATCTCTTCTGCGAGCCGGCCTGTCTCTGTGCTGGGTTCCCGGAGCCATCTGAGCCAGCACAGGCGACGAGAAATTAAAATC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96461 82 -    177848 CATCTCTTCTGCGAGCCGGCCTGTCTCTGTGCTGGGTTCCCGGAGCCATCTGAGCCAGCACAGGCGACGAGGAATTAAAATC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259698 50 +    417917 CATCTCTTCTGCGAGCCGGCCTGTCTCTGTGCTGTGTTCCCGGAGCCATC--------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68252 77 -     71016 CATCTTATCTACCAGCCGGCCTGGCGTTGTGCTGTGTTCCCGGAGCCCTCTCACCCGGCAGAGGCAACACGAAATGT-----
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e otoGar3.GL873584                263075 28 +  11138919 I
e chlSab2.chrUn_KE147541v1        178025 88 -    811265 I
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=6956.000000
s hg38.chrX_KI270880v1_alt        183624 19 +    284869 AGGCCTGGCATTGTGCTAC
s panTro5.chrX                    346517 19 + 155549662 AGGCCTGGCATTGTGCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96543 19 -    177848 AGGCCTGGCATTGTGCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584                263103 16 +  11138919 AAGGCTGGCATTGTGT---
i otoGar3.GL873584             I 28 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e chlSab2.chrUn_KE147541v1        178025 88 -    811265 I
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e macFas5.chrUn_KE146020           68329  0 -     71016 C
e gorGor5.CYUI01015925v1          259748  0 +    417917 C

a score=23948.000000
s hg38.chrX_KI270880v1_alt        183643 55 +    284869 GTC----TCTGTGCTGGGTTCCCGGAGCCATCGTGAGCCAGCAGAGGC--GACAAGCAATT
s panTro5.chrX                    346536 55 + 155549662 GTC----TCTGTGCTGGGTTCCCGGGGCCATCGTGAGCCAGCAGAGGC--GACAAGCAATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96562 55 -    177848 GTC----TCTGTGCTGGGTTCCCGGGGCCATCGTGAGCCAGCAGAGGC--GACAAGCAATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259748 30 +    417917 ----------GTG---------------------GATCAAGCAGAGGCAAAACAAGCAATT
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178113 54 -    811265 GTC----TCTGTGCTGTGTTCCCGGAGCCCTC-TCACCCGGCAGAGGC--AACACGAAATT
i chlSab2.chrUn_KE147541v1     I 88 C 0
s otoGar3.GL873584                263119 52 +  11138919 GTCCCAGTCTCCGCCACGTTCCCGGGGCCATC-TGA-CAAGCAGGAGC--GAACGG-----
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e saiBol1.JH378345                250379 1477 +    465904 T
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T
e macFas5.chrUn_KE146020           68329  0 -     71016 C

a score=103574.000000
s hg38.chrX_KI270880v1_alt        183698 71 +    284869 AAAATCAGCTGCAAAT----CCTACGGCCGGAGCGTCCGGGGAGTGCAGGAC-GGGACCAGCCAGGCCTCGAACCC
s panTro5.chrX                    346591 71 + 155549662 AAGATCAGCTGCAAAT----CCTACGGCCGGAGCGTCTGGGGAGTGCAGGAC-GGGACCAGCCAGGCCTCGAACCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96617 71 -    177848 AAAATCAGTTGCAAAT----CCTACGGCCGGAGCGTCTGGTGAGTGCAGGAC-GGGACCAGCCAGGCCTCGAACCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259778 71 +    417917 AAAATCAGCTGCAAAT----CCTACGGCCGGAGCGTCCGGGGACTGCAGGAC-GGGACCAGCCAGGCCTCGAACCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68329 71 -     71016 -AAATCGGTTGCAAAT----CCTACGGCCAGAGTGTCCCGGGAGCGCGGGACGGGGACCGGCCAGGCCTCGAACCC
i macFas5.chrUn_KE146020       C 0 I 1
s chlSab2.chrUn_KE147541v1        178167 72 -    811265 TAAATCGGTTGCACAT----CCTACGGCCAGAGTGTCCAGGGAGCGCCGGACGGGGACCGGCCAGGCCTCGAACCC
i chlSab2.chrUn_KE147541v1     C 0 I 172
s saiBol1.JH378345                248902 75 +    465904 aaaatcaactgCAAATGGTACGTACGGCCACAGGGTCCACACAGCGCGGGCC-GGGAGCGGCCGGACGTGACACCT
i saiBol1.JH378345             T 1477 C 0
s otoGar3.GL873584                263171 55 +  11138919 ------AGCCTCAAAT----CCT---------GCGTCCGGGGAGCACCGACC-GGGCCTGAGC-GGCTCGGCGCCC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=30276.000000
s hg38.chrX_KI270880v1_alt        183769  58 +    284869 ---CCGTCCC-------------TCTGGAT-GGGGTCGAGTCTG------AAGATTCCTCCTCC------TGCCCAGGA-------------------------------------------CTGTTCAG-------
s panTro5.chrX                    346662  58 + 155549662 ---CCTTCCC-------------TCTCGAT-GGCGTCCAGTCTG------AAGATTCCTCCTCC------TGCCCAGGA-------------------------------------------CTGTTCAG-------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96688  58 -    177848 ---GCTTCCC-------------TCTCGAT-GGCGTCCAGTCTG------AAGATTCCTTCTCC------TGCCCAGGA-------------------------------------------CTGTTCAG-------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259849  58 +    417917 ---CCCTCCC-------------TCTCGAT-GGCGTCCAGTCTG------AGGATTCCTCCTCC------TGCCCAGGA-------------------------------------------CTGTTCAG-------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68401  59 -     71016 ---CCCTCCC-------------TCTTCATGGGGGTCCAGTCCG------AGGATTGCTCGGCC------TTCCCTGGA-------------------------------------------CTGTGCAC-------
i macFas5.chrUn_KE146020       I 1 I 110
s saiBol1.JH378345                248977 101 +    465904 ---GCGTCCC-------------CGGAGAC-GGGGTCCGGCCTG------AGGATTCCCCGTCC------TCCTGAGGACCCTAGAAATGACCCTCCGGCTGGCGCCAGCCTCCGCCAGCTGCTGCTGAG-------
i saiBol1.JH378345             C 0 I 21
s otoGar3.GL873584                263226  97 +  11138919 GCGTCCTCCCCATACTCTGCCAACCTCGCT-ggc-cccggcccgccgcgcgcgTCTGCCCGGCCAAGCTGTCTCCGGGA-----------------------GCGCG---------------TTGCGCAGCGCAGGG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e chlSab2.chrUn_KE147541v1        178239 172 -    811265 I
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=48757.000000
s hg38.chrX_KI270880v1_alt        183827 59 +    284869 ATCCTCGGTGGAGTGTGGACACGGATTAGTCGTCCACTGCTGCAGACGAGATCAGAGCC
s panTro5.chrX                    346720 59 + 155549662 ATCCTCGGTGGAGTGTGGACACGGATTAGTCGTCCACTGCTGCAGACGAGATCAGAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96746 59 -    177848 ATCCTCGGTGGAGTGTGGACACGGATTAGTCGTCCACTGCTGCAGACGAGATCACAGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259907 59 +    417917 ATCCTCGGTGGAGTGTGGACACGGATTAGTCGTCCACTGCTGCAGACGAGATCAGGGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           68570 25 -     71016 ATCCTCGGTGGAGTGTGGACACGGA----------------------------------
i macFas5.chrUn_KE146020       I 110 C 0
s chlSab2.chrUn_KE147541v1        178411 24 -    811265 ATCCTCGGTGGAGTGTGGACACGG-----------------------------------
i chlSab2.chrUn_KE147541v1     I 172 C 0
s saiBol1.JH378345                249099 56 +    465904 AGCCTCGGGGGGCTGTGGACTCAGATCCGCCGTGAACGGCAGCG---ATGGTGACGGCC
i saiBol1.JH378345             I 21 C 0
s otoGar3.GL873584                263323 51 +  11138919 ATCCTCCGCGG-----GGACCCGGATTAGCCGTGAGCGGCGGCCGCGATGGTCTCC---
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e cerAty1.NW_012001098v1          225709 391 -   1025902 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e rheMac8.chr6                 143319558 374 + 180051392 I
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=7998.000000
s hg38.chrX_KI270880v1_alt        183886 3 +    284869 AAG
s panTro5.chrX                    346779 3 + 155549662 AAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96805 3 -    177848 AAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259966 3 +    417917 AAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319932 3 + 180051392 AAG
i rheMac8.chr6                 I 374 C 0
s macFas5.chrUn_KE146020           68595 2 -     71016 -AG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226100 3 -   1025902 AAG
i cerAty1.NW_012001098v1       I 391 C 0
s chlSab2.chrUn_KE147541v1        178435 3 -    811265 AAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                249155 3 +    465904 GGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                263374 3 +  11138919 CAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e colAng1.NW_012115411v1          338979 472 +   1230721 T
e macNem1.NW_012017243v1          323804 628 +  25972781 T

a score=321005.000000
s hg38.chrX_KI270880v1_alt        183889 100 +    284869 -CCTCGGTATTCAGTTCGTTACAACTTCATAAAGCCAGGTCGCTCCCCCTCTG-CCTCTGTACGC---AGGAAGAAAATCGATCGGTCTAATTTCATAGCTCAGC
s panTro5.chrX                    346782 100 + 155549662 -CCTCGGTGTTCAGTTCCTTACAACTTCATGAAGCCAGGTCGCTCCCGCTCTG-CCTCTGTACAC---AGGAAGAAAATTGATCCGTCTAATTTGATAGCTCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96808 100 -    177848 -CCTCGGTGTTCAGTTCCTTACAACTTCATGAAGCCAGGTCGCTCCCGCTCTG-CCTCTGTACAC---AGGAAGAAAATTGATCCGTCTAATTTGATAGCTCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          259969 100 +    417917 -CCTCGGTGTCCGGTTCGTTACAACTTCATAAAGCCAGGTCGCTCCCCCTCTG-CCTCTGTACAC---AGGAAGAAAATCGATCGGTCTAATTTCATAGCTCAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143319935  99 + 180051392 -CCTCGGTGTTCAGTTCATTATAACTTCATAAAGCC-GGTCGCGCCCCGTCTG-CCTCTGCAAAC---AGGAAGAAAATCGATCGGTCTAATTTGATAGCTCAGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68597  99 -     71016 -CCTCGGTGTTCAGTTCATTATAACTTCATAAAGCC-GGTCGCGCCCCGTCTG-CCTCTGCACAC---AGGAAGAAAATCGATCGGTCTAATTTGATAGCTCAGC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323176  99 +  25972781 -CCTCGGTGTTCAGTTCATTATAACTTCATAAAGCC-GGTCGCGCCCCGTCTG-CCTCTGCACAG---AGGAAGAAAATCGATCGGTCTAATTTGATAGCTCAGC
i macNem1.NW_012017243v1       T 628 C 0
s cerAty1.NW_012001098v1          226103 100 -   1025902 -CCTCGGTGTTCAGTTCATTATAACTTCATAAAGCTGGGTCGCGCCCCGTCTG-CCTCTGCACAC---AGGAAGAAAATCGATTGGTCTAATTTGATAGCTCAGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178438  99 -    811265 -CCTCGGTGTTCAGTTCATTATAACTTCATAAAGCC-GGTCGCGCCCCGTCTG-CCTCTGCACAC---AGGAAGAAAATCGATCGGTGTAATTTGATAGCTCAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                249158  67 +    465904 -CTTCGGCGCTGAGTTCATTA-AACCCCATAAAACC--ATCGCCCCCCGTCTG-CCT-GGCACGC---CGCAAGGA-----------------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584                263377 101 +  11138919 CCTTTTGTGTTCACTTCATTATGACTCCGAGAAGCC----CTGGCCCCCTCCGCCCTCCGCGCGCTCAGAGAGGAAAACCGACGGGTCTGAACCGACCGCGCAGC
i otoGar3.GL873584             C 0 I 4259
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=141009.000000
s hg38.chrX_KI270880v1_alt        183989 60 +    284869 ATAAAA-CTCGACGGAACCTTTGCAAAGGCAATGAT--------------AAAAAAGATCCCGGAAAAAGCCGAC
s panTro5.chrX                    346882 61 + 155549662 ATAAAAGCTCGACGGCACCTTTGCAAAGGCAGTGAT--------------AAAAAAGATCCCGGAAAAAGCCGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96908 61 -    177848 ATAAAAGCTGGACGGAACCTTTGCAAAGGCAGTGAT--------------AAAAAAGATCCCGGAAAAAGCCGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260069 60 +    417917 ATAAAA-CTCGACGGAACCTTTGCAAAGGCAATGAT--------------AAAAAAGATCCCGGAAAAAGCCGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320034 68 + 180051392 ATAAAAGCTCGACGGAACCTTTGCAAGAGCAGTGAT-----AAAAAAAAAAAAAAAGAT--TGGAAAGAGCCGGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68696 68 -     71016 ATAAAAGCTCGACGGAACCTTTGCAAGAGCAGTGAT-----AAAAAAAAAAAAAAAGAT--TGGAAAGAGCCGGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323275 73 +  25972781 ATAAAAGCTCGACGGAACCTTTGCAAGAGCAGTGATaaaaaaaaaaaaaaaaaaaaaaT--TGGAAAGAGCCGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226203 70 -   1025902 ATAAAAGCTCGACGGAACCTTTGCAAGACCAGTGAT-----AAAAAAAAAAAAAAAGATTCTGGAAAGAGCCGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178537 64 -    811265 ATAAAAGCTGGACCGAACCTTTGCAAGAGCGGTGAT-----------AAAAATAAAGATTCCGGAAAGAGCCGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345                249225 32 +    465904 -------CTC-ACGG-----------------------------------GAAAAAGACCCCAGAGAAGACTGAG
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e otoGar3.GL873584                263478 4259 +  11138919 I
e colAng1.NW_012115411v1          338979 472 +   1230721 T

a score=274728.000000
s hg38.chrX_KI270880v1_alt        184049 67 +    284869 AGTCTCCACGGCATGACGGCGCGGCCGCAGCTGAATAAACTCGGGGTGGGCGGCCAACCCTGCTGCA
s panTro5.chrX                    346943 67 + 155549662 AGTCTCCACGGCATGACGGCACGGCCGCAGCTGAATAAACTCGGGGTGGGCGGCCAACCCTGCTGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     96969 67 -    177848 AGTCTCCACGGCATGACGGCACGGCCGCAGCTGAATAAACTCGGGGTGGGCGGCCAACCCTGCTGCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260129 67 +    417917 AGTCTCCACGGCATGACGGCACGGCCGCAGCTGAATAAACTCGGGGTGGGCGGCCGACCCTGCTGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320102 67 + 180051392 AGTCTCCACGGCATGAGGGCAAGGCCGCAGCTGAATAAACTCAGGGTGGGCGGCCAACCCCGCTGCA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68764 67 -     71016 AGTCTCCACGGCATGAGGGCAAGGCCGCAGCTGAATAAACTCAGGGTGGGCGGCCAACCCCGCTGCA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323348 67 +  25972781 AGTCTCCACGGCATGAGGGCAAGGCCGCAGCTGAATAAACTCAGGGTGGGCCGCCAACCCCGCTGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226273 67 -   1025902 AGTCTCCACGGCATGAGGGCAAGGCCGCAGCTGAATAAACTCAGGGTGGGCGGCCAGCCCTGCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178601 67 -    811265 AGTCTCCACGGCATGAGGGCACGGCCGCAGCTGAATAAACTCAGGGTGGGCAGCCAACCCTGCTGCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338507 67 +   1230721 AGTCTCCACCGCATGAGGGCACCGCCGCAGCTGAATAAACTCAGGGTGGGCGGCCAACCCTGCTGCA
i colAng1.NW_012115411v1       T 472 C 0
s saiBol1.JH378345                249257 40 +    465904 AGTCTGCACGGTGTGC---------------------------GGAAGGGCGGCCCACCCGGGTGCA
i saiBol1.JH378345             C 0 I 1082
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=96003.000000
s hg38.chrX_KI270880v1_alt        184116 36 +    284869 TAGACGGCCATCAGGTCCCAGGA-------------------------------------------------------------TGGAGCTGGATTC
s panTro5.chrX                    347010 36 + 155549662 TAGACGGCCATCAGGTCCCAGGA-------------------------------------------------------------TGGAGCTGGATTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97036 36 -    177848 TAGACGGCCATCAGGTCCCAGGA-------------------------------------------------------------TGGAGCTGGATTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260196 36 +    417917 TAGACGGCCATTAGGTCCCGGGA-------------------------------------------------------------TGGAGTTGGATTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320169 84 + 180051392 TAGACGTCCGTTAGGTCCCGGGAGGCAGCTGGATTCGAG-----TCTGCT--------GTGTAGATGGCTATTAGGTCCCAGGATGGAGCTGGATTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68831 36 -     71016 TAGACGTCCGTTAGGTCCCGGGAGGC-------------------------------------------------------------AGCTGGATTC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323415 84 +  25972781 TAGACGTCCGTTAGGTCCCGGGAGGCAGCTGGA-------------TGCGAGTCTGCTGTGTAGACGGCCATTAGGTCCCAGGACGGAGCTGGATTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226340 84 -   1025902 TAGACGGCCGTTAGGTCTCGGGAGGCAGCTGGATTCCAGTCTGCT-------------GTGTAGATAGCCATTAGGTCCCAGGATGGAGCTGGATTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178668 36 -    811265 TAGACGGCCATTAGGTCCTGGGA-------------------------------------------------------------CGGAGCTGGATTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338574 36 +   1230721 TAGACGGCCATTAGGTCCCGGGAGGC-------------------------------------------------------------AGCTGGATTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250379 36 +    465904 TAGATGGCCATTAGGTCCCGGGA-------------------------------------------------------------TGGAGCTGCCTCT
i saiBol1.JH378345             I 1082 C 0
e manLeu1.NW_012108508v1          179527 4725 -    350446 M
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=26253.000000
s hg38.chrX_KI270880v1_alt        184152 5 +    284869 GAGCC
s panTro5.chrX                    347046 5 + 155549662 GAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97072 5 -    177848 GAGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260232 5 +    417917 GAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320253 5 + 180051392 GAGGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68867 5 -     71016 GAGTC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323499 5 +  25972781 GAGTC
i macNem1.NW_012017243v1       C 0 I 336
s cerAty1.NW_012001098v1          226424 5 -   1025902 GAGTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178704 5 -    811265 GAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184387 5 -    350446 GAGCC
i manLeu1.NW_012108508v1       M 4725 C 0
s colAng1.NW_012115411v1          338610 5 +   1230721 GAGTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250415 5 +    465904 GAGCC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=327066.000000
s hg38.chrX_KI270880v1_alt        184157 86 +    284869 TGCTGTGTAGACACCCATTAG------GTCCTGGGACGGAGCTGGATTCGAGTCTGCTGCATAGACGGCCATTAGGTCCCGGGACGGAGCTG
s panTro5.chrX                    347051 92 + 155549662 TGCTGTGTAGACAGCCATTAGGTCCCAGTCCCAGGACCCAGCTGGATTCGAGCCTGCTGTGTAGACACCCATTAGGTCCTGCGACGGAGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97077 92 -    177848 TGCTGTGTAGACAGTCATTAGGTCCCAGTCCTAGGACCCAGCTGGATTCGAGCCTGCTGCATAGACAGCCATCAGGTCCCGGGACGGAGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260237 86 +    417917 TGCTGTGTAGACACCTATTAG------GTCCCGGGACGGAGCTGGATTCGAGCCTGCTCTGTAGACGGCCATTAGGTCCCGGGACGGAGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320258 86 + 180051392 TGCTGTGTAGACAGACATTAG------GTCCCGGGACAGAGCTGCATCTGAGTCTGCTGTGTGGATGGCCATTAGCTCCTGGGACAGAGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68872 86 -     71016 TGCTGTGTTGATGGCTATTAG------GTCCCAGGATGGAGCTGGATTCGAGTCTGTTGTGTAGACAGACATTAGGTCCCGGGACGGAGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323840 86 +  25972781 TGCTGTGTAGACAGCCATTAG------GTCCTGGGACAGAGCTGGATTCGAGTCAGCTGTGTAGACAGCCATTAGGTCCCAGGACGGAGCTG
i macNem1.NW_012017243v1       I 336 C 0
s cerAty1.NW_012001098v1          226429 86 -   1025902 TGCTGTGTAGACAGCCATTAG------GTCCCAAGACACAGCTGCATCTGAGTGTGCTGTGTAGACAGCCATTAGGTCCCAGGACGGAGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        178709 86 -    811265 TGCTGTGTGGATGGCCATTAG------CTCCCGGAACGGAGCTGGATTCGAGCCTGCTGTGTGGATGGCCATTAGCTCCCGGAACGGAGCTG
i chlSab2.chrUn_KE147541v1     C 0 T 2431
s manLeu1.NW_012108508v1          184392 86 -    350446 TGCTGTGTAGACAGACATTAG------ATCCTGAGACGGAGCTGCATCTGAGTCTGCTGTGTAGACGACCATTAGGTCCCAGGACAGAGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338615 38 +   1230721 ------------------------------------------------------TGCTGTGTAGACAGACAGGAGGTCCCGGGACGGAGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250420 86 +    465904 TGCCATGTAGACAGCCATGAG------ATCCTGGGACAGACATGTATCCGAGCCTGCTGTGTAGACAGTCACTATGTCCAAGGAGGGAGCTA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=150614.000000
s hg38.chrX_KI270880v1_alt        184243 31 +    284869 GATTCGAGCCTGCTGTGTAGACAGCCATTAG
s panTro5.chrX                    347143 31 + 155549662 GATTCGAGTCTGCTGCATAGACGGCCATTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97169 31 -    177848 GATTCGAGCCTGCTGTGTAGACAGCCATTAG
i panPan2.chrUn_NW_014024190v1 C 0 T 150
s gorGor5.CYUI01015925v1          260323 31 +    417917 GATTTGAGCCTGCTGCATAGACGGCCATTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320344 31 + 180051392 GGTTTGAGCTTGCTGTGTAGACAGCCATTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68958 31 -     71016 CATCTGAGTCTGCTGTGTACATGGCCATTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323926 31 +  25972781 GATTCGAGTCAGCTGTGTAGACAGCCATTAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226515 31 -   1025902 GATTTGAGCCTGCTGTGTAGACAGACATTAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176364 31 -    811265 GATTCGAGCCTGCTGTGTAGACAGACATTAG
i chlSab2.chrUn_KE147541v1     T 2431 C 0
s manLeu1.NW_012108508v1          184478 31 -    350446 GATTCGAGTCAGCTGTGTAGACAGCCATTAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338653 31 +   1230721 GATTCGAGCCTGCTGTGTAGACAGACATTAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250506 31 +    465904 CCTTTGAGCCTGCTGTGTAGACGGCCATTAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=107439.000000
s hg38.chrX_KI270880v1_alt        184274 27 +    284869 GTCCTGGGATGGAGTTGGATTCGAGCC
s panTro5.chrX                    347174 27 + 155549662 GTCCCAGGATGGAGTTGGATCCGAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97050 27 -    177848 GTCCCAGGATGGAGCTGGATTCGAGCC
i panPan2.chrUn_NW_014024190v1 T 150 C 0
s gorGor5.CYUI01015925v1          260354 27 +    417917 GTCCCGGGACGGAGCTGGATTCCAGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320375 27 + 180051392 CTCCCGGGATGGAGCTGCATCCGAGTC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           68989 27 -     71016 CTCCTGGGACAGAGCTGGGTTTGAGCT
i macFas5.chrUn_KE146020       C 0 I 642
s macNem1.NW_012017243v1          323957 27 +  25972781 GTCCCAAGACACAGCTGCATCCGAGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226546 27 -   1025902 GTCCCCAGACACAGCTGCATCCGAGCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176395 27 -    811265 GTCCCAGGACGGAGCTGGATCCGAGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184509 27 -    350446 GTCCCAGGACGGAGTGGGATTCGAGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338684 27 +   1230721 GTCCCGGGACGGAGCTGCATCTGAGTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250537 27 +    465904 GTCCTGGGAGGGAGCTTCCTCTGAGCC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=129877.000000
s hg38.chrX_KI270880v1_alt        184301 32 +    284869 TGCTGTGTAGACAGCCATTAGGTCCTGGGACA
s panTro5.chrX                    347201 27 + 155549662 TGCTGTGTAGACAGCCATTAGGTCC-----CA
i panTro5.chrX                 C 0 I 59
s panPan2.chrUn_NW_014024190v1     97077 27 -    177848 TGCTGTGTAGACAGTCATTAGGTCC-----CA
i panPan2.chrUn_NW_014024190v1 C 0 I 11
s gorGor5.CYUI01015925v1          260381 27 +    417917 TGCTGTGTAGACGGCCATTAGGTCC-----CG
i gorGor5.CYUI01015925v1       C 0 I 5
s rheMac8.chr6                 143320402 32 + 180051392 TGCTGTGTAGACGGCCATTAGGTCCCGGGATG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69658 32 -     71016 TGCTGTGTAGACAGCCATTAGGTCCCAGGACG
i macFas5.chrUn_KE146020       I 642 C 0
s macNem1.NW_012017243v1          323984 32 +  25972781 TGCTGTGTAGACAGACATTAGATCCTGAGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226573 32 -   1025902 TGCTGTGTAGACAGACATTAGATCCTGAGACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176422 32 -    811265 TGCTGTGTAGACAGACATTAGATCCTGAGATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184536 32 -    350446 TGCTGTGTAGACAGACATTAGGTCCCGGGACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338711 32 +   1230721 TGCTGCGTAGATGGCCATTAGCTCCTGGGACA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250564 31 +    465904 TGCTGTGCAGACTGCCATGAGATCCTGGGAC-
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=116004.000000
s hg38.chrX_KI270880v1_alt        184333 30 +    284869 GAGCTGGATTCGAGTCTGCTGCATAGACGG
s panTro5.chrX                    347287 30 + 155549662 GAGCTGGATTCGAGTCTGCTGCATAGACGG
i panTro5.chrX                 I 59 C 0
s panPan2.chrUn_NW_014024190v1     97115 30 -    177848 CAGCTGGATTCGAGCCTGCTGCATAGACAG
i panPan2.chrUn_NW_014024190v1 I 11 C 0
s gorGor5.CYUI01015925v1          260413 30 +    417917 GAGCTGGATTTGAGCCTGCTGCATAGACGG
i gorGor5.CYUI01015925v1       I 5 T 1951
s rheMac8.chr6                 143320434 30 + 180051392 GAGCTCGATTTGAGTCTGCTGTGTAGACAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69690 30 -     71016 GAACTGGATTCGAGCCTGCTGTGTAGACAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324016 30 +  25972781 GAGCTGCATCCAAGTTTGCTGTGTAGACGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226605 30 -   1025902 GAGCTGCATCCAAGTTTGCTGTGTAGACGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176454 30 -    811265 GAGCTGCATCCAAGTTTGCTGTATAGACGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184568 30 -    350446 GAGCTGGATTCGAGTCTGCTGTGTAGACAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338743 30 +   1230721 GAGCTGGATTCGAGTGTGCTGTGTAGACAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250595  6 +    465904 ------------------------AGACGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=17721.000000
s hg38.chrX_KI270880v1_alt        184363 5 +    284869 CCATT
s panTro5.chrX                    347317 5 + 155549662 CCATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97145 5 -    177848 CCATC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143320464 5 + 180051392 CCATT
i rheMac8.chr6                 C 0 I 102
s macFas5.chrUn_KE146020           69720 5 -     71016 ACATT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324046 5 +  25972781 CCATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226635 5 -   1025902 CCATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176484 5 -    811265 TCATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184598 5 -    350446 ACATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338773 5 +   1230721 ACATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250601 5 +    465904 CCATC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260443 1951 +    417917 T

a score=4504.000000
s hg38.chrX_KI270880v1_alt        184368 2 +    284869 AT
s panTro5.chrX                    347322 2 + 155549662 AG
i panTro5.chrX                 C 0 T 96
s panPan2.chrUn_NW_014024190v1     97150 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1 C 0 I 48
s rheMac8.chr6                 143320571 2 + 180051392 AG
i rheMac8.chr6                 I 102 C 0
s macFas5.chrUn_KE146020           69725 2 -     71016 AG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324051 2 +  25972781 AG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226640 2 -   1025902 AG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176489 2 -    811265 AT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184603 2 -    350446 AG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338778 2 +   1230721 AG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250606 2 +    465904 TG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260443 1951 +    417917 T

a score=24932.000000
s hg38.chrX_KI270880v1_alt        184370 7 +    284869 GTCCCGG
s panTro5.chrX                    347228 7 + 155549662 GTCCCAG
i panTro5.chrX                 T 96 C 0
s panPan2.chrUn_NW_014024190v1     97200 7 -    177848 GTCCCGG
i panPan2.chrUn_NW_014024190v1 I 48 C 0
s rheMac8.chr6                 143320573 7 + 180051392 GTCCCAG
i rheMac8.chr6                 C 0 I 1122
s macFas5.chrUn_KE146020           69727 7 -     71016 ATCCCGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324053 7 +  25972781 GTCCCGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226642 7 -   1025902 GTCGCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176491 7 -    811265 GTCCCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184605 7 -    350446 GTCCCAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338780 7 +   1230721 ATCCTGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250608 7 +    465904 GTCCTGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260443 1951 +    417917 T

a score=129084.000000
s hg38.chrX_KI270880v1_alt        184377 33 +    284869 GATGGAGCTGGATTCGAGCCTGCTGTGTAGACA
s panTro5.chrX                    347235 33 + 155549662 GACCCAGCTGGATTCGAGCCTGCTGTGTAGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97207 33 -    177848 GACGGAGCTGGATTCGAGCCTGCTGTGTAGACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143321702 33 + 180051392 GAAGGAGCTGGATTCGAGTCAGCTGTGTAGACA
i rheMac8.chr6                 I 1122 C 0
s macFas5.chrUn_KE146020           69734 33 -     71016 GACGGAGCTGCATCTCAGTCTGCTGTGTGGATG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324060 33 +  25972781 GAAGGAGTTGGATTCGAGTCAGCTGTGTAGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226649 33 -   1025902 GATGGAGCTGGATTCGAGTCAGCTGTGTAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176498 33 -    811265 GACGGAGCTGGATTCAAGTCAGCTGTGTAGACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184612 33 -    350446 GACGGAGCTGGATTCGAGCCTACTGTGTAGACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338787 33 +   1230721 GACGGAGCTGCATCTGAGTCTGCTGTGTAGACA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250615 33 +    465904 GATGGAGCTGCATCAGAACCTGCTGTGTAGACG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260443 1951 +    417917 T

a score=198461.000000
s hg38.chrX_KI270880v1_alt        184410 46 +    284869 GCCATTAGGTCCCGGGACAGAGCTGGATTCGAGTCTGCTGCATAGA
s panTro5.chrX                    347268 46 + 155549662 CCCATTAGGTCCCGTGACGGAGCTGGATTCGAGTCTGCTGCATAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97240 46 -    177848 GCCATTAGGTCCTGGGATGGAGTTGGATTCGAGCCTGCTGTGTAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258492 46 +    417917 GCTATTAGGTCCCGGGACGCAGGTGGATCCGAGTCTGCTGCATAGA
i gorGor5.CYUI01015925v1       T 1951 C 0
s rheMac8.chr6                 143321735 46 + 180051392 GCCATTAGGTCCCAAGATACAGCTGCATCCGAGTCTGCTGCATAGA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69767 46 -     71016 GCCATTAGCTCCTGGGACAGAGCTGGGTTTGAGCTTGCTGTGTAGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324093 46 +  25972781 GCCATTAGGTCCCAAGATACAGCTGCATCCGAGTCTGCTGCATAGA
i macNem1.NW_012017243v1       C 0 I 2959
s cerAty1.NW_012001098v1          226682 46 -   1025902 GACATTAGGTCCCGGGACGGAGCTGCATCTGAGTCTGCTGTGTAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176531 46 -    811265 GCTATTAGGTCCCAAGACACAGCTGCATCCGAGTTTGCTGTGTAGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184645 46 -    350446 GACATTAGGTCCCAAGACACAGCTACATCCAAGTCTGCTGTGTAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338820 46 +   1230721 GACATTAGATACTGAGACGGAGCTGCATCCAGGTTTGCTGTGTAGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250648 46 +    465904 GCCATTAAGTCCTGGGACAGAGCTGCATTAGAGCCTGCCGTGTAGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=103157.000000
s hg38.chrX_KI270880v1_alt        184456 31 +    284869 TGGCCATTAG------GTCCCGGGATGGAGCTGGATT
s panTro5.chrX                    347314 31 + 155549662 CGGCCATTAG------GTCCCGGGACGGAGCTGGATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97286 31 -    177848 CAGCCATTAG------GTCCTGGGAAGGAGCTGGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258538 31 +    417917 CGGCCATTAG------GTCCCAGGATGGAGCTGCATC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321781 31 + 180051392 CGGCCATTAG------GTCCTGGGATGCAGCTGGATT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69813 31 -     71016 CAGACATTAG------GTCCCCAGACACAGCTGCTTC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          226728 31 -   1025902 CAGCCATTAG------GTCCCAGGATGGAGTTGGATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176577 31 -    811265 CGGCCATTAG------GTCCTGGAATGCAGCTGGATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184691 37 -    350446 CGGCCATTAGGTCCCAGTCCCAGGATGGAAATGGATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338866 31 +   1230721 TGGCCTTTAG------GTCCTCGGACGGAGCTGGATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250694 30 +    465904 -GGCCATGAG------ATCCTGGGATGAAACTGCATC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e macNem1.NW_012017243v1          324139 2959 +  25972781 I

a score=176056.000000
s hg38.chrX_KI270880v1_alt        184487 36 +    284869 CGAGCCTGCTGTGTAGACAGCCATTAG------GTCCTGGGA
s panTro5.chrX                    347345 36 + 155549662 CGAGCCTGCTGTGTAGACAGCCATTAG------GTCCTGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97317 36 -    177848 CGAGCCTGCTGTGTAGACAGCCATTAG------GTCCTGGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258569 42 +    417917 CGAGCCTGCTGTGTAGACAGCCATTAGGTCCCAGTCCCGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321812 36 + 180051392 CGAGCCTGCTGTGTAGACGGCCCTTAT------GTCCCGGGA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69844 36 -     71016 CGAGCCTGCTGTGTAGACAGACATTAG------ATCCTGAGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327098 36 +  25972781 CGAGCCTGCTGTGTAGACAGACATTAG------ATCCTGAGA
i macNem1.NW_012017243v1       I 2959 C 0
s cerAty1.NW_012001098v1          226759 36 -   1025902 CGAGTCTGCTGTGTAGACAGACATTAG------ATCCTGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176608 36 -    811265 CGAGCCTGCTGTGTAGATGGCCCTTAT------GTCCTGGGA
i chlSab2.chrUn_KE147541v1     C 0 T 110
s manLeu1.NW_012108508v1          184728 36 -    350446 CGAGCCTGCTGTGTAGACAGACATTAG------CTCCCGGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338897 36 +   1230721 CGAGTCAGCTGTGTAGACAGCCATTAG------CTCCCAGGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250724 36 +    465904 AGAGCCTGCTGTGTAGACAGCCATCAG------GTCATGGGA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=21973.000000
s hg38.chrX_KI270880v1_alt        184523 5 +    284869 TGGAG
s panTro5.chrX                    347381 5 + 155549662 TGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97353 5 -    177848 TGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258611 5 +    417917 TGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321848 5 + 180051392 CGGAG
i rheMac8.chr6                 C 0 T 1362
s macFas5.chrUn_KE146020           69880 5 -     71016 CGGAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327134 5 +  25972781 CGGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226795 5 -   1025902 CGGAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184764 5 -    350446 CGGAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338933 5 +   1230721 CGGAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250760 5 +    465904 CAGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=67119.000000
s hg38.chrX_KI270880v1_alt        184528 20 +    284869 TTGGATTCGAG-CCTGCTGTG
s panTro5.chrX                    347386 20 + 155549662 CTGGATTCGAG-CCTGCTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97358 20 -    177848 TTGGATTCGAG-CCTGCTGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258616 21 +    417917 CTGGAGTCGAGCCCTGCTATG
i gorGor5.CYUI01015925v1       C 0 I 198
s rheMac8.chr6                 143320491 20 + 180051392 CTGGATTTCAG-CCTGCTGTG
i rheMac8.chr6                 T 1362 C 0
s macFas5.chrUn_KE146020           69885 20 -     71016 CTGCATCCAAG-TTTGCTGTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327139 20 +  25972781 CTGCATCCAAG-TTTGCTGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226800 20 -   1025902 CTGCATCCAAG-TTTGCTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184769 20 -    350446 CTGCATCCGAG-TCTGCTGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338938 20 +   1230721 CTGCATCTGAG-CCTGCTGTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250765 20 +    465904 CTACATCTGAC-CCTGCTGTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=14290.000000
s hg38.chrX_KI270880v1_alt        184548 3 +    284869 TAG
s panTro5.chrX                    347406 3 + 155549662 TAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97378 3 -    177848 TAG
i panPan2.chrUn_NW_014024190v1 C 0 T 48
s gorGor5.CYUI01015925v1          258835 3 +    417917 TAG
i gorGor5.CYUI01015925v1       I 198 C 0
s rheMac8.chr6                 143320511 3 + 180051392 TAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69905 3 -     71016 TAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327159 3 +  25972781 TAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226820 3 -   1025902 TAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184789 3 -    350446 TAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338958 3 +   1230721 TAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250785 3 +    465904 CAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=116974.000000
s hg38.chrX_KI270880v1_alt        184551 31 +    284869 ACAGCCATTAGGTCCCGGGACGGAGCTGGAT
s panTro5.chrX                    347409 31 + 155549662 ACAGCCATTAGGTCCTGGGAAGGAGCTGGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97333 31 -    177848 ACAGCCATTAGGTCCTGGGATGGAGTTGGAT
i panPan2.chrUn_NW_014024190v1 T 48 T 96
s gorGor5.CYUI01015925v1          258838 31 +    417917 ACGGCCATTAGGTCCCAGGACGGAGCTGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320514 31 + 180051392 ACAGACATTAGATCCTGAAAGAGAACTACAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69908 31 -     71016 ACAGCCATTAGGTCCTGGGACAGAGCTGGAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327162 31 +  25972781 ACGGCCATTAGGTCCTGGGACAGAGCTGGAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226823 31 -   1025902 ACAGCCATTTGGTCCCGGGACAGAGCTGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184792 31 -    350446 ACAGACATTAGCTCCCGGGACGGAGCTGCAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338961 31 +   1230721 ACAGCCATTAGGTCCCGGGATGGAGCTGGAT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250788 31 +    465904 ACGGCCATTAGTTTCTGGAATGGAGCTGCAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=16839.000000
s hg38.chrX_KI270880v1_alt        184582 6 +    284869 TTGAGT
s panTro5.chrX                    347440 6 + 155549662 TCGAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97268 6 -    177848 TCGAGC
i panPan2.chrUn_NW_014024190v1 T 96 C 0
s gorGor5.CYUI01015925v1          258869 6 +    417917 TGGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320545 6 + 180051392 CCAAGT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69939 6 -     71016 TCGAGT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327193 6 +  25972781 TCGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226854 6 -   1025902 TCGAGT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184823 6 -    350446 CCGAGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338992 6 +   1230721 TTCAGT
i colAng1.NW_012115411v1       C 0 T 288
s saiBol1.JH378345                250819 6 +    465904 CTGAGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=64895.000000
s hg38.chrX_KI270880v1_alt        184588 17 +    284869 CTGCTGCATAGATGGCC
s panTro5.chrX                    347446 17 + 155549662 CTGCTGCATAGACGGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97274 17 -    177848 CTGCTGTGTAGACAGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258875 17 +    417917 CTGCTGTGTAGATGGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143320551 17 + 180051392 CTGCTGTGTAGACGGCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69945 17 -     71016 CAGCTGTGTAGACAGCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327199 17 +  25972781 CAGCTGTGTAGACAGCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226860 17 -   1025902 CAGCTGTGTAGACAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          184829 17 -    350446 CTGCTATGTAGACAGCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338710 17 +   1230721 CTGCTGCGTAGATGGCC
i colAng1.NW_012115411v1       T 288 C 0
s saiBol1.JH378345                250825 17 +    465904 CCGCTGTGTAGGCAGTC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176644 110 -    811265 T

a score=213677.000000
s hg38.chrX_KI270880v1_alt        184605 44 +    284869 ATGAG------GTCCCAGGACGGAGCTGGATTCGAGCCTGCTGTGTAGAC
s panTro5.chrX                    347463 44 + 155549662 ATTAG------GTCCCGGGACGGAGCTGGATTCGAGCCTGCTGTGTAGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97291 44 -    177848 ATTAG------GTCCTGGGAAGGAGCTGGATTCGAGCCTGCTGTGTAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258892 44 +    417917 GTTAG------GTCCCGGGATGCAGCTGCATCCGAGCCTGCTGTGTAGAC
i gorGor5.CYUI01015925v1       C 0 I 1507
s rheMac8.chr6                 143320568 50 + 180051392 ATGAGGTCCCAGTCCCAGGATGGAGCTGGATTCGAGCCTACTGTGTAGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           69962 44 -     71016 ATTAG------GTCCCAGGACGGAGCTGCATTCGAGCCTGCTGTGTAGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327216 44 +  25972781 ATTAG------GTCCCAGGACGGAGCTGGATTCGAGCCTGCTGTGTAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226877 44 -   1025902 ATTAG------GTCCCAGGACGGAGCTGGATTCGATCCTGCTGTGTAGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176534 44 -    811265 ATTAG------GTCCCAAGACACAGCTGCATCCGAGTTTGCTGTGTAGAC
i chlSab2.chrUn_KE147541v1     T 110 C 0
s manLeu1.NW_012108508v1          184846 44 -    350446 ATTAG------GTCCCAAGACACAGCTGCATCCGAGCCTGCTGTGTAGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338727 44 +   1230721 ATTAG------CTCCTGGGACAGAGCTGGATTCGAGTGTGCTGTGTAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250842 44 +    465904 ATGAG------GTCCCAGGACGGAGTTGCATCTGAGCCTGCTGTATAGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=6178.000000
s hg38.chrX_KI270880v1_alt        184649 2 +    284869 AT
s panTro5.chrX                    347507 2 + 155549662 AG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97335 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143320618 2 + 180051392 AG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70006 2 -     71016 AG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327260 2 +  25972781 AG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226921 2 -   1025902 AG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176578 2 -    811265 GG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184890 2 -    350446 GG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338771 2 +   1230721 AG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250886 2 +    465904 AG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          258936 1507 +    417917 I

a score=31884.000000
s hg38.chrX_KI270880v1_alt        184651 7 +    284869 CCATTAG
s panTro5.chrX                    347509 7 + 155549662 CCATTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97337 7 -    177848 CCATTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260443 7 +    417917 CTATTAG
i gorGor5.CYUI01015925v1       I 1507 C 0
s rheMac8.chr6                 143320620 7 + 180051392 CCACTAG
i rheMac8.chr6                 C 0 I 726
s macFas5.chrUn_KE146020           70008 7 -     71016 ACATTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327262 7 +  25972781 ACATTAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226923 7 -   1025902 ACATTAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176580 7 -    811265 CCATTAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184892 7 -    350446 CCATTAG
i manLeu1.NW_012108508v1       C 0 I 6
s colAng1.NW_012115411v1          338773 7 +   1230721 ACATTAG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250888 7 +    465904 CCATGAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=24398.000000
s hg38.chrX_KI270880v1_alt        184658 5 +    284869 GTCCT
s panTro5.chrX                    347516 5 + 155549662 GTCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97344 5 -    177848 GTCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260450 5 +    417917 GTCCC
i gorGor5.CYUI01015925v1       C 0 T 1818
s rheMac8.chr6                 143321353 5 + 180051392 GTCCC
i rheMac8.chr6                 I 726 C 0
s macFas5.chrUn_KE146020           70015 5 -     71016 ATCCT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327269 5 +  25972781 ATCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          226930 5 -   1025902 GTCCC
i cerAty1.NW_012001098v1       C 0 I 192
s chlSab2.chrUn_KE147541v1        176587 5 -    811265 GTCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184905 5 -    350446 GTCCC
i manLeu1.NW_012108508v1       I 6 C 0
s colAng1.NW_012115411v1          338780 5 +   1230721 ATCCT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250895 5 +    465904 GTCCT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=104088.000000
s hg38.chrX_KI270880v1_alt        184663 27 +    284869 GAGACGGAGCTGGATTCAAGTCTGCTG
s panTro5.chrX                    347521 27 + 155549662 GGGAAGGAGCTGGATTCGAGTCTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97349 27 -    177848 GGGATGGAGTTGGATTCGAGCCTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 T 48
s rheMac8.chr6                 143321358 27 + 180051392 AGGATGGAGCTGGATTCGAGCCTGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70020 27 -     71016 GAGACGGAGCTGCATCCAAGTTTGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327274 27 +  25972781 GAGACGGAGCTGCATCCAAGTTTGCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227127 27 -   1025902 GGGACGGAGTTGGATTTGAGCCTGCTG
i cerAty1.NW_012001098v1       I 192 C 0
s chlSab2.chrUn_KE147541v1        176592 27 -    811265 GGAATGCAGCTGGATTCGAGCCTGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184910 27 -    350446 AGGATGGAGCTGGATTCGAGCCTGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338785 27 +   1230721 GAGACGGAGCTGCATCTGAGTCTGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250900 27 +    465904 GGGATGGAGCTGCATCTGAGCCTGCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260455 1818 +    417917 T

a score=5147.000000
s hg38.chrX_KI270880v1_alt        184690 2 +    284869 CA
s panTro5.chrX                    347548 2 + 155549662 CA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97328 2 -    177848 TG
i panPan2.chrUn_NW_014024190v1 T 48 C 0
s rheMac8.chr6                 143321385 2 + 180051392 TG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70047 2 -     71016 TG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327301 2 +  25972781 TG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227154 2 -   1025902 TA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176619 2 -    811265 TG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184937 2 -    350446 TG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338812 2 +   1230721 TG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250927 2 +    465904 TG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          260455 1818 +    417917 T

a score=112946.000000
s hg38.chrX_KI270880v1_alt        184692 24 +    284869 TAGACGGCCATTAGGTCCCGGGAC
s panTro5.chrX                    347550 24 + 155549662 TAGACGGCCATTAGGTCCCGGGAC
i panTro5.chrX                 C 0 I 102
s panPan2.chrUn_NW_014024190v1     97330 24 -    177848 TAGACAGCCATTAGGTCCTGGGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258637 24 +    417917 TAGATGGCCATTAGGTCCCAGGAC
i gorGor5.CYUI01015925v1       T 1818 C 0
s rheMac8.chr6                 143321387 24 + 180051392 TAGACAGCCATTAGCTCCCGGGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70049 24 -     71016 TAGACAGCCATTAGCTCCCGGGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327303 24 +  25972781 TAGACAGACATTAGGTCCCAAGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227156 24 -   1025902 TAGACGGCCATTAGGTCCCGGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176621 24 -    811265 TAGATGGCCCTTATGTCCTGGGAC
i chlSab2.chrUn_KE147541v1     C 0 T 192
s manLeu1.NW_012108508v1          184939 24 -    350446 TAGACAGACATTAGCTCCCGGGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338814 24 +   1230721 TAGACAGACATTAGATACTGAGAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250929 24 +    465904 TAGACGGCCATTAGGTTCCGGGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=43186.000000
s hg38.chrX_KI270880v1_alt        184716 12 +    284869 GCAGGTGGATCC
s panTro5.chrX                    347676 12 + 155549662 GCAGGTACATCC
i panTro5.chrX                 I 102 C 0
s panPan2.chrUn_NW_014024190v1     97354 12 -    177848 GGAGTTGGATTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258661 12 +    417917 GCAGGTGGATCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321411 12 + 180051392 GGAGCTGCATCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70073 12 -     71016 GGAGCTGCATCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327327 12 +  25972781 ACAGCTGCATCC
i macNem1.NW_012017243v1       C 0 T 3360
s cerAty1.NW_012001098v1          227180 12 -   1025902 GCAGCTGCATTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176453 12 -    811265 GGAGCTGCATCC
i chlSab2.chrUn_KE147541v1     T 192 C 0
s manLeu1.NW_012108508v1          184963 12 -    350446 GGAGCTGCATCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338838 12 +   1230721 GGAGCTGCATCC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250953 12 +    465904 AGAGCTGTCTCT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=44894.000000
s hg38.chrX_KI270880v1_alt        184728 10 +    284869 AAGTCTGCTG
s panTro5.chrX                    347688 10 + 155549662 TAGTCTGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97366 10 -    177848 GAGCCTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 T 96
s gorGor5.CYUI01015925v1          258673 10 +    417917 GAGCCTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321423 10 + 180051392 GAGTCTGCTG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70085 10 -     71016 GAGTCTGCTG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323979 10 +  25972781 GAGCCTGCTG
i macNem1.NW_012017243v1       T 3360 C 0
s cerAty1.NW_012001098v1          227192 10 -   1025902 GAGTCTGTTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176465 10 -    811265 AAGTTTGCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184975 10 -    350446 GAGTCTGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338850 10 +   1230721 AGGTTTGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250965 10 +    465904 GAACCTCCTG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=27103.000000
s hg38.chrX_KI270880v1_alt        184738 8 +    284869 CATAGATG
s panTro5.chrX                    347698 8 + 155549662 CATAGATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97280 8 -    177848 TGTAGACA
i panPan2.chrUn_NW_014024190v1 T 96 C 0
s gorGor5.CYUI01015925v1          258683 8 +    417917 CATAGATG
i gorGor5.CYUI01015925v1       C 0 I 1764
s rheMac8.chr6                 143321433 8 + 180051392 TGTTGATG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70095 8 -     71016 TGTTGATG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323989 8 +  25972781 TGTAGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227202 8 -   1025902 TGTAGACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176475 8 -    811265 TATAGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184985 8 -    350446 TGTAGGCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338860 8 +   1230721 TGTAGATG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250975 8 +    465904 TACAGACG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=59725.000000
s hg38.chrX_KI270880v1_alt        184746 15 +    284869 GCCATTAGGTCCCAG
s panTro5.chrX                    347706 15 + 155549662 GCCATTAGGTCCCAG
i panTro5.chrX                 C 0 T 147
s panPan2.chrUn_NW_014024190v1     97288 15 -    177848 GCCATTAGGTCCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143321441 15 + 180051392 GCCATTAGGTCCTGG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70103 15 -     71016 GCCATTAGGTCCTGG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          323997 15 +  25972781 GACATTAGATCCTGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227210 15 -   1025902 GCCATTAGGTCCCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176483 15 -    811265 GTCATTATGTCCCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          184993 15 -    350446 GCCATTAGGTCCTGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338868 15 +   1230721 GCCTTTAGGTCCTCG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250983 15 +    465904 GCCATCAGGTCCTGG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          258691 1764 +    417917 I

a score=7280.000000
s hg38.chrX_KI270880v1_alt        184761 3 +    284869 GAT
s panPan2.chrUn_NW_014024190v1     97303 3 -    177848 GAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143321456 3 + 180051392 GAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70118 3 -     71016 GAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324012 3 +  25972781 GAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227225 3 -   1025902 GAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176498 3 -    811265 GAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185008 3 -    350446 GAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338883 3 +   1230721 GAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250998 3 +    465904 AAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    347721 147 + 155549662 T
e gorGor5.CYUI01015925v1          258691 1764 +    417917 I

a score=165010.000000
s hg38.chrX_KI270880v1_alt        184764 43 +    284869 GGAGCTGGATTTGAGTCTGCTGCGTAGATGACCATTAGGTCCT
s panTro5.chrX                    347574 43 + 155549662 GGAGCTGGATTCGAGCCTGCTGTGTAGACAGCCATTAGGTCCC
i panTro5.chrX                 T 147 C 0
s panPan2.chrUn_NW_014024190v1     97306 43 -    177848 GGAGCTGGATTCGAGCCTGCTGTGTAGACAGCCATTAGGTCCT
i panPan2.chrUn_NW_014024190v1 C 0 T 299
s rheMac8.chr6                 143321459 43 + 180051392 GGAACTGGATTTGAGTCTGCTGTGTAGACAGCCATTAGATCCT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70121 43 -     71016 GGAACTGGATTTGAGTCTGCTGTGTAGACAGCCATTAGATCCT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324015 38 +  25972781 GGAGCTGCATCCAAGTTTGCTGTGTAGACGGCCATTAG-----
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227228 43 -   1025902 AGAGCTGGATTTGAGCCTGCTGTGTAGACAGACATTAGATCCT
i cerAty1.NW_012001098v1       C 0 I 91
s chlSab2.chrUn_KE147541v1        176501 43 -    811265 GGAGCTGGATTCAAGTCAGCTGTGTAGACAGCTATTAGGTCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185011 43 -    350446 GGAACTGGATTTGAGTCTGCTGTGTAGACAGCCATTAGATCCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338886 38 +   1230721 GGAGCTGGATTCGAGTCAGCTGTGTAGACAGCCATTAG-----
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                251001 43 +    465904 GGAGCTGCAGCTGAGCCCGCTGTGTAGACAGCCATTAGGTCCT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          258691 1764 +    417917 I

a score=91.000000
s hg38.chrX_KI270880v1_alt        184807 1 +    284869 A
s panTro5.chrX                    347617 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          185054 0 -    350446 C
e saiBol1.JH378345                251044 0 +    465904 C
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176544 0 -    811265 C
e cerAty1.NW_012001098v1          227271 91 -   1025902 I
e colAng1.NW_012115411v1          338924 0 +   1230721 C
e rheMac8.chr6                 143321502 0 + 180051392 C
e macNem1.NW_012017243v1          324053 0 +  25972781 C
e macFas5.chrUn_KE146020           70164 0 -     71016 C
e gorGor5.CYUI01015925v1          258691 1764 +    417917 I
e panPan2.chrUn_NW_014024190v1     97349 299 -    177848 T

a score=-1002.000000
s hg38.chrX_KI270880v1_alt        184808 6 +    284869 GTCCCA
s panTro5.chrX                    347618 6 + 155549662 GTCCCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97050 6 -    177848 GTCCCA
i panPan2.chrUn_NW_014024190v1 T 299 C 0
s rheMac8.chr6                 143321502 1 + 180051392 -----G
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70164 1 -     71016 -----G
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227362 6 -   1025902 GTCCCA
i cerAty1.NW_012001098v1       I 91 C 0
s chlSab2.chrUn_KE147541v1        176544 1 -    811265 -----A
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338924 6 +   1230721 CTCCCA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                251044 1 +    465904 G-----
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          185054 0 -    350446 C
e otoGar3.GL873584                263478 4259 +  11138919 I
e macNem1.NW_012017243v1          324053 0 +  25972781 C
e gorGor5.CYUI01015925v1          258691 1764 +    417917 I

a score=138229.000000
s hg38.chrX_KI270880v1_alt        184814 42 +    284869 GGATAGAGCTGCATAGGAGCCTGCTGTGTAGACAGCCATTAG
s panTro5.chrX                    347624 42 + 155549662 GGATGGAGCTGGAGTCGAGCCTGCTGTGTAGACGGCCATTAG
i panTro5.chrX                 C 0 I 102
s panPan2.chrUn_NW_014024190v1     97056 42 -    177848 GGATGGAGCTGGATTCGAGCCTGCTGTGTAGACAGTCATTAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260455 42 +    417917 GGATGGAGCTACATCCGAGCCTGCTGTGTAGACAGCCATTAG
i gorGor5.CYUI01015925v1       I 1764 C 0
s rheMac8.chr6                 143321503 42 + 180051392 AGACGGAGCTGCATCTGAGTCTGCTGTGTAGACAGCCATTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70165 42 -     71016 AGACGGAGCTGCATCTGAGTCTGCTGTGTAGACAGCCATTAG
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227368 42 -   1025902 AGACACAGCTGCATCCGAGTCTGCTGTGTAGGCGGCCATTAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176545 42 -    811265 AGACACAGCTGCATCCGAGTTTGCTGTGTAGACGGCCATTAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          338930 42 +   1230721 GGACGGAGCTGCATCTGAGCCTGCTGTGTAGACAGCCATTAG
i colAng1.NW_012115411v1       C 0 I 26
s saiBol1.JH378345                251045 42 +    465904 GGATGAGGCTACATCTGATCCTGCTGTGTAGACAGCCCTTAG
i saiBol1.JH378345             C 0 T 742
e manLeu1.NW_012108508v1          185054  0 -    350446 C
e otoGar3.GL873584                263478 4259 +  11138919 I
e macNem1.NW_012017243v1          324053  0 +  25972781 C

a score=7425.000000
s hg38.chrX_KI270880v1_alt        184856 4 +    284869 GTCC
s panTro5.chrX                    347768 4 + 155549662 GTCC
i panTro5.chrX                 I 102 C 0
s panPan2.chrUn_NW_014024190v1     97098 4 -    177848 GTCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260497 4 +    417917 ATCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321545 4 + 180051392 GTCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70207 4 -     71016 GTCC
i macFas5.chrUn_KE146020       C 0 C 0
s chlSab2.chrUn_KE147541v1        176587 4 -    811265 GTCC
i chlSab2.chrUn_KE147541v1     C 0 T 100
e manLeu1.NW_012108508v1          185054 0 -    350446 C
e saiBol1.JH378345                251087 742 +    465904 T
e otoGar3.GL873584                263478 4259 +  11138919 I
e cerAty1.NW_012001098v1          227410 0 -   1025902 C
e colAng1.NW_012115411v1          338972 26 +   1230721 I
e macNem1.NW_012017243v1          324053 0 +  25972781 C

a score=2865.000000
s hg38.chrX_KI270880v1_alt        184860 2 +    284869 CA
s panTro5.chrX                    347772 2 + 155549662 CA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97102 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260501 2 +    417917 CA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321549 2 + 180051392 CA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70211 2 -     71016 CA
i macFas5.chrUn_KE146020       C 0 C 0
e manLeu1.NW_012108508v1          185054 0 -    350446 C
e saiBol1.JH378345                251087 742 +    465904 T
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e cerAty1.NW_012001098v1          227410 0 -   1025902 C
e colAng1.NW_012115411v1          338972 26 +   1230721 I
e macNem1.NW_012017243v1          324053 0 +  25972781 C

a score=15580.000000
s hg38.chrX_KI270880v1_alt        184862 5 +    284869 GTCCC
s panTro5.chrX                    347774 5 + 155549662 GTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97104 5 -    177848 GTCCT
i panPan2.chrUn_NW_014024190v1 C 0 I 255
s gorGor5.CYUI01015925v1          260503 5 +    417917 GTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321551 5 + 180051392 GTCCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70213 5 -     71016 GTCCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324053 5 +  25972781 GTCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227410 5 -   1025902 GTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s saiBol1.JH378345                250345 5 +    465904 ATCCC
i saiBol1.JH378345             T 742 C 0
e manLeu1.NW_012108508v1          185054 0 -    350446 C
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e colAng1.NW_012115411v1          338972 26 +   1230721 I

a score=1107.000000
s hg38.chrX_KI270880v1_alt        184867 1 +    284869 A
s panTro5.chrX                    347779 1 + 155549662 A
i panTro5.chrX                 C 0 I 577
s gorGor5.CYUI01015925v1          260508 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321556 1 + 180051392 A
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70218 1 -     71016 A
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324058 1 +  25972781 G
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227415 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185054 1 -    350446 G
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250350 1 +    465904 G
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e colAng1.NW_012115411v1          338972 26 +   1230721 I
e panPan2.chrUn_NW_014024190v1     97109 255 -    177848 I

a score=8188.000000
s hg38.chrX_KI270880v1_alt        184868 5 +    284869 GGATG
s gorGor5.CYUI01015925v1          260509 5 +    417917 GGACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321557 5 + 180051392 GGACG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70219 5 -     71016 GGACG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324059 5 +  25972781 GGAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227416 5 -   1025902 GGACG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185055 5 -    350446 AGACG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250351 5 +    465904 GGACA
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    347780 577 + 155549662 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e colAng1.NW_012115411v1          338972 26 +   1230721 I
e panPan2.chrUn_NW_014024190v1     97109 255 -    177848 I

a score=21612.000000
s hg38.chrX_KI270880v1_alt        184873 9 +    284869 GAGCTGGAG
s panTro5.chrX                    348357 9 + 155549662 GAGCTGGAT
i panTro5.chrX                 I 577 C 0
s gorGor5.CYUI01015925v1          260514 9 +    417917 CAGCTGGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321562 9 + 180051392 GAGCTGGAT
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70224 9 -     71016 GAGCTGGAT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324064 9 +  25972781 GAGTTGGAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227421 9 -   1025902 GAGCTGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185060 9 -    350446 GAGCTGCAT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250356 9 +    465904 GACCTGTAT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e colAng1.NW_012115411v1          338972 26 +   1230721 I
e panPan2.chrUn_NW_014024190v1     97109 255 -    177848 I

a score=15098.000000
s hg38.chrX_KI270880v1_alt        184882 6 +    284869 TCGAGC
s panTro5.chrX                    348366 6 + 155549662 TCGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97364 6 -    177848 TCGAGC
i panPan2.chrUn_NW_014024190v1 I 255 C 0
s gorGor5.CYUI01015925v1          260523 6 +    417917 TCGAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321571 6 + 180051392 TTAAGC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70233 6 -     71016 TTAAGC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324073 6 +  25972781 TCGAGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227430 6 -   1025902 TTGAGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185069 6 -    350446 CTGAGT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250365 6 +    465904 CCCAGC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e colAng1.NW_012115411v1          338972 26 +   1230721 I

a score=50985.000000
s hg38.chrX_KI270880v1_alt        184888 11 +    284869 CTGC---TGTGTAG
s panTro5.chrX                    348372 14 + 155549662 CTGCGGCTGTGTAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97370 11 -    177848 CTGC---TGTGTAG
i panPan2.chrUn_NW_014024190v1 C 0 T 229
s gorGor5.CYUI01015925v1          260529 11 +    417917 CTGC---TGTGTAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321577 11 + 180051392 CTGC---TGTGTAG
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70239 11 -     71016 CTGC---TGTGTAG
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324079 11 +  25972781 CAGC---TGTGTAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227436 11 -   1025902 CTGC---TGTGTAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185075 11 -    350446 CTGC---TGTGTAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          338998 11 +   1230721 CTGC---TGTGTAG
i colAng1.NW_012115411v1       I 26 C 0
s saiBol1.JH378345                250371 11 +    465904 CTGC---TGTGTAG
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T

a score=16184.000000
s hg38.chrX_KI270880v1_alt        184899 17 +    284869 ACAGCCATTAGGTCC--------------------------------------CA
s panTro5.chrX                    348386 17 + 155549662 ACAGCCATTAGGTCC--------------------------------------CA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          260540 11 +    417917 ACACCCATTAG--------------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321588 17 + 180051392 ACAGACATTAGGTCC--------------------------------------CA
i rheMac8.chr6                 C 0 I 90
s macFas5.chrUn_KE146020           70250 55 -     71016 ACAGACATTAGGTCCCAAGACACAGCTGCATCCGAGCCTGCTGTGTAGACAGACA
i macFas5.chrUn_KE146020       C 0 I 52
s macNem1.NW_012017243v1          324090 17 +  25972781 ACAGCCATTAGGTCC--------------------------------------CA
i macNem1.NW_012017243v1       C 0 T 44
s cerAty1.NW_012001098v1          227447 11 -   1025902 ACAGACATTAG--------------------------------------------
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185086 17 -    350446 ATAGCCATTAGGTTC--------------------------------------CA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339009 17 +   1230721 ACAGCCATTAGGTTC--------------------------------------CA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250382 11 +    465904 ATGGCCATTAG--------------------------------------------
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 100 -    811265 T
e panPan2.chrUn_NW_014024190v1     97381 229 -    177848 T

a score=43681.000000
s hg38.chrX_KI270880v1_alt        184916 10 +    284869 GTCCCAGGAT
s panTro5.chrX                    348403 10 + 155549662 GTCCCAGGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97152 10 -    177848 GTCCCGGGAC
i panPan2.chrUn_NW_014024190v1 T 229 C 0
s gorGor5.CYUI01015925v1          260551 10 +    417917 GTCCCGGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321695 10 + 180051392 GTCCCGGGAA
i rheMac8.chr6                 I 90 C 0
s macFas5.chrUn_KE146020           70357 10 -     71016 GTCCCGGGAA
i macFas5.chrUn_KE146020       I 52 C 0
s cerAty1.NW_012001098v1          227458 10 -   1025902 GTCCCGGGAC
i cerAty1.NW_012001098v1       C 0 I 96
s chlSab2.chrUn_KE147541v1        176491 10 -    811265 GTCCCGGGAC
i chlSab2.chrUn_KE147541v1     T 100 C 0
s manLeu1.NW_012108508v1          185103 10 -    350446 GTCCCAGGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339026 10 +   1230721 GTCCCAGGAT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                250393 10 +    465904 GTCCCGGGAT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e macNem1.NW_012017243v1          324107 44 +  25972781 T

a score=51447.000000
s hg38.chrX_KI270880v1_alt        184926 9 +    284869 GGAGCTGGA
s panTro5.chrX                    348413 9 + 155549662 GGAGCTGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97162 9 -    177848 GGAGCTGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260561 9 +    417917 GGAGCTGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321705 9 + 180051392 GGAGCTGGA
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70367 9 -     71016 GGAGCTGGA
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324063 9 +  25972781 GGAGTTGGA
i macNem1.NW_012017243v1       T 44 C 0
s cerAty1.NW_012001098v1          227564 9 -   1025902 GGAGCTGGA
i cerAty1.NW_012001098v1       I 96 C 0
s chlSab2.chrUn_KE147541v1        176501 9 -    811265 GGAGCTGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185113 9 -    350446 GGAGCTGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          339036 9 +   1230721 GGAGCTGGA
i colAng1.NW_012115411v1       C 0 I 874
s saiBol1.JH378345                250403 9 +    465904 GGAGCTGCC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I

a score=136574.000000
s hg38.chrX_KI270880v1_alt        184935 34 +    284869 GTCAAGCCTGCTGTGTAGACGGCCATTAGGTCCC
s panTro5.chrX                    348422 33 + 155549662 GTCGAGCCTGCTGTGTAGACGGCCATTA-GTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97171 34 -    177848 TTCGAGCCTGCTGTGTAGACAGCCATTAGGTCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          260570 34 +    417917 TTCGAGCCTGCTGTGTAGACGGCCCTTACGTCCC
i gorGor5.CYUI01015925v1       C 0 T 2295
s rheMac8.chr6                 143321714 34 + 180051392 TTCGAGTCAGCTGTGTAGACAGCCATTAGGTCCC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70376 34 -     71016 TTCGAGTCAGCTGTGTAGACAGCCATTAGGTCCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324072 34 +  25972781 TTCGAGTCAGCTGTGTAGACAGCCATTAGGTCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          227573 34 -   1025902 TTCGAGCCTGCTGTGTAGACAGACATTAGGTCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176510 34 -    811265 TTCAAGTCAGCTGTGTAGACAGCTATTAGGTCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185122 34 -    350446 TTCGAGTCAGCTGTGTAGACAGCTATTAGGTCCC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250412 34 +    465904 TCTGAGCCTGCCATGTAGACAGCCATGAGATCCT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I

a score=107480.000000
s hg38.chrX_KI270880v1_alt        184969 34 +    284869 AGGATGCA-GGTAC-ATCCTAGTCTGCTG-CAT-AGAC
s panTro5.chrX                    348455 38 + 155549662 AGGATGCAGGGTACAATCCTCGTCTGCTGCCATAAGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97205 34 -    177848 GGGACGGA-GCTGG-ATTCGAGCCTGCTG-TGT-AGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258309 34 +    417917 AGGATGCA-GCTAC-ATCTGAGCCTGCTG-CAT-AGAC
i gorGor5.CYUI01015925v1       T 2295 C 0
s rheMac8.chr6                 143321748 34 + 180051392 AAGATACA-GCTGC-ATCCGAGTCTGCTG-CAT-AGAC
i rheMac8.chr6                 C 0 C 0
s macFas5.chrUn_KE146020           70410 34 -     71016 AAGATACA-GCTGC-ATCCGAGTCTGCTG-CAT-AGAC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          324106 34 +  25972781 AAGATACA-GCTGC-ATCCGAGTCTGCTG-CAT-AGAC
i macNem1.NW_012017243v1       C 0 I 3199
s cerAty1.NW_012001098v1          227607 34 -   1025902 AAGACACA-GCTAC-ATCCAAGTCTGCTG-TGT-AGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176544 34 -    811265 AAGACACA-GCTGC-ATCCGAGTTTGCTG-TGT-AGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          185156 34 -    350446 AAGACACA-GCTGC-ATCCGAGTCTGCTG-CAT-AGAC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                250446 34 +    465904 GGGACAGA-CATGT-ATCCGAGCCTGCTG-TGT-AGAC
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I

a score=22634.000000
s hg38.chrX_KI270880v1_alt        185003 13 +    284869 GGCCATTAGGTCC
s panTro5.chrX                    348493 12 + 155549662 GGCCATTATGT-C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97239 11 -    177848 AGCCATTAGGT--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258343 11 +    417917 GGCCATTAGGT--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143321782 13 + 180051392 GGCCATTAGGTCC
i rheMac8.chr6                 C 0 I 2274
s macFas5.chrUn_KE146020           70444  9 -     71016 GGCCATTAG----
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227641 13 -   1025902 GGCCATTAGGTCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        176578 13 -    811265 GGCCATTAGGTCC
i chlSab2.chrUn_KE147541v1     C 0 I 2656
s manLeu1.NW_012108508v1          185190 13 -    350446 GGCCATTAGGTCC
i manLeu1.NW_012108508v1       C 0 T 102
s saiBol1.JH378345                250480  8 +    465904 AGTCACTA-----
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e macNem1.NW_012017243v1          324140 3199 +  25972781 I

a score=-698.000000
s hg38.chrX_KI270880v1_alt        185016 2 +    284869 CA
s panTro5.chrX                    348505 2 + 155549662 CA
i panTro5.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          227654 2 -   1025902 CA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185101 2 -    350446 CA
i manLeu1.NW_012108508v1       T 102 C 0
s saiBol1.JH378345                250488 1 +    465904 T-
i saiBol1.JH378345             C 0 I 598
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          324140 3199 +  25972781 I
e macFas5.chrUn_KE146020           70453 0 -     71016 C
e gorGor5.CYUI01015925v1          258354 0 +    417917 C
e panPan2.chrUn_NW_014024190v1     97250 0 -    177848 C

a score=35416.000000
s hg38.chrX_KI270880v1_alt        185018 20 +    284869 GTCCCAGGATG-GAGCTGCAT
s panTro5.chrX                    348507 21 + 155549662 GTCCCAGGATGTGAGCTGCAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97250 18 -    177848 --CCTGGGATG-GAGTTGGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258354 18 +    417917 --CCTGGGATG-GAGCTGCAT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70453 20 -     71016 GTCCTGGGATG-CAGCTGGAT
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227656 20 -   1025902 GTCCCAGGATG-GAGCTGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185103 20 -    350446 GTCCCAGGACG-GAGCTGGAT
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345                251087 20 +    465904 GTCCCAGGACG-GAGTTGTAT
i saiBol1.JH378345             I 598 I 598
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          324140 3199 +  25972781 I

a score=-333.000000
s hg38.chrX_KI270880v1_alt        185038 2 +    284869 --AG
s panTro5.chrX                    348528 4 + 155549662 TATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97268 2 -    177848 --TC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258372 2 +    417917 --TG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70473 2 -     71016 --TC
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          227676 2 -   1025902 --TC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185123 2 -    350446 --TC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          324140 3199 +  25972781 I

a score=11642.000000
s hg38.chrX_KI270880v1_alt        185040 6 +    284869 GAGCCT
s panTro5.chrX                    348532 6 + 155549662 GAGCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97270 6 -    177848 GAGCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          258374 6 +    417917 GACTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70475 6 -     71016 GAGCCT
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327339 6 +  25972781 GAGCCT
i macNem1.NW_012017243v1       I 3199 C 0
s cerAty1.NW_012001098v1          227678 6 -   1025902 GAGCCT
i cerAty1.NW_012001098v1       C 0 I 1648
s manLeu1.NW_012108508v1          185125 6 -    350446 GAGTCA
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I

a score=53149.000000
s hg38.chrX_KI270880v1_alt        185046 24 +    284869 GCTGTGTAGACAGCCATTAGGTCC
s panTro5.chrX                    348538 23 + 155549662 GCTGTGTAGACAGCCATTA-GTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     97276 24 -    177848 GCTGTGTAGACAGCCATTAGGTCC
i panPan2.chrUn_NW_014024190v1 C 0 I 1327
s gorGor5.CYUI01015925v1          258380 24 +    417917 GCTGTGTAGACAGCCATTAGGTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146020           70481 24 -     71016 GCTGTGTAGACGGCCCTTATGTCC
i macFas5.chrUn_KE146020       C 0 C 0
s macNem1.NW_012017243v1          327345 24 +  25972781 GCTGTGTAGACAGACATTAGATCC
i macNem1.NW_012017243v1       C 0 M 2905
s cerAty1.NW_012001098v1          229332 24 -   1025902 GCTGTGTAGACAGCTATTAGGTCC
i cerAty1.NW_012001098v1       I 1648 C 0
s manLeu1.NW_012108508v1          185131 24 -    350446 GCTGTGTAGACAGCTATTAGGTCC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I

a score=1500.000000
s hg38.chrX_KI270880v1_alt        185070 1 +    284869 C
s panTro5.chrX                    348561 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          258404 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 I 3152
s macFas5.chrUn_KE146020           70505 1 -     71016 C
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          229356 1 -   1025902 C
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          185155 1 -    350446 C
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=422.000000
s hg38.chrX_KI270880v1_alt        185071 1 +    284869 A
s panTro5.chrX                    348562 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020           70506 1 -     71016 G
i macFas5.chrUn_KE146020       C 0 C 0
s cerAty1.NW_012001098v1          229357 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 I 789
s manLeu1.NW_012108508v1          185156 1 -    350446 A
i manLeu1.NW_012108508v1       C 0 I 7745
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          258405 3152 +    417917 I
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=300.000000
s hg38.chrX_KI270880v1_alt        185072 1 +    284869 G
s panTro5.chrX                    348563 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146020           70507 1 -     71016 G
i macFas5.chrUn_KE146020       C 0 N 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          258405 3152 +    417917 I
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=764.000000
s hg38.chrX_KI270880v1_alt        185073 8 +    284869 TCCCAaca
s panTro5.chrX                    348564 8 + 155549662 TCCCAACA
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          258405 3152 +    417917 I
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=13047.000000
s hg38.chrX_KI270880v1_alt        185081 61 +    284869 cacacaaaccacagtaaacacata-cactatgcacaacacagatgccacaccacacacacac
s panTro5.chrX                    348572 59 + 155549662 -ACACAAA-CACAGTAAACACATACCACTATGCACAACACA-ATGccacaccacacacacac
i panTro5.chrX                 C 0 T 785
s gorGor5.CYUI01015925v1          261557 61 +    417917 cacacaaaccacactaaacacata-cactatgcgcaacacagatgccacacaacacacacac
i gorGor5.CYUI01015925v1       I 3152 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=33079.000000
s hg38.chrX_KI270880v1_alt        185142 137 +    284869 aacacataa-------------------------------------------aatacacactacacacaaaacacctactgcacacaacacacagaatacacactacacacagcacacacaaaccacactaaacacatatgctatgcacaacaaagatgccacacaacacacacacatag
s panTro5.chrX                    347846 180 + 155549662 aacacataaaatacacactacacacaaaacacatactgcacacaacgcacagaatacacactacacacaaaacacatactgcacacaacacacagaatacacactacacacagcacacacaaaccacactaaacacatatgctatgcacaacaaagatgccacacaacacacacacatag
i panTro5.chrX                 T 785 I 796
s gorGor5.CYUI01015925v1          261618 158 +    417917 aacacacaacatacatactacacacaacacaa--------------------aatacacactacacac-aaacacatactgcacaaaacacacagaatacacactacacacagcacacacaaaccacactaaacacatatgctatgcacaacaaagatgccacacaacacacacac-tgg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=19897.000000
s hg38.chrX_KI270880v1_alt        185279 80 +    284869 aacacacaaaatatacacaaca-cacacaaaccacactaaacacatatg-cacaacacagatgccacagaacacacacacat
s panTro5.chrX                    348822 81 + 155549662 aacacacaaaatatacacaacagcacacaaaccacactaaacacatatgccacaacacagat-ccacagaacacacacacat
i panTro5.chrX                 I 796 I 269
s gorGor5.CYUI01015925v1          261776 80 +    417917 aacacacaaaatatacacaaca-cacacaaaccacactaaacacatatg-cacaacacagatgccacagaacacacacacat
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=46480.000000
s hg38.chrX_KI270880v1_alt        185359 342 +    284869 aaaacacgcaaatacatactatacacaacac-agcacaaaccacacactgcacacacaaa-tgcac-actacacacaaaccacacaaaccacactaaacacacacactctgc-acagtacaaa-caccacactaaatacacatatacacaaaatacatatgacacacaaaatac-atagaaaaacacagactgg-cctcacaaa-ccacacac-actatgcacaacacagatgccacaccac-acacacacata-taacacacaaaatacacactac-acacagcacacacaaaccacactaaacacatat-gcacaacacagatgccacacaacacgcacacacccaacacaca
s panTro5.chrX                    349172 338 + 155549662 aaaacacgcaaatacatactatacacaacacgagcacaaaccacacactgcacacacaaaatgcaccactacacacaa----------ccacactaaacacac----TCTGCCACAGTACAAAACACCACACTAAATATACATATACACAAAATACATATGGCAAGCAAAATACCATAGAAAAACACAGACTGGGCCTCACAAAACCACACACCACTATGCACAACA-AGATGCC-CACCACTACA-ACACATAATAACACACAAAATACACACTACCACACAGCACACACAAACCACAACTAACACATATTGCACAACACAGATGCCACACAACACGCACACAACCAACACACA
i panTro5.chrX                 I 269 C 0
s gorGor5.CYUI01015925v1          261856 230 +    417917 aaaacacgcaaatacatactatacacaacac-agcacaaaccacacactgcacacacaaaatgcac-actacacacaa----------ccacactaaacacacacacactgc-acagtacaaa-caccacactaaatacacatatacacaaaatacat---------agaatac------aaaacacagactgg-cctcacaaa-ccacacac-actatgcacaacacagatgccacaccgc-aca--------------------------------------------------------------------------------------------cacacatttaacacaca
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=9248.000000
s hg38.chrX_KI270880v1_alt        185701 35 +    284869 aaatacacactacacacaacacacacaaaccacag
s panTro5.chrX                 155195816 35 - 155549662 aaatacacactacacacagcacacacaaaccacac
i panTro5.chrX                 T 24734 I 8
s gorGor5.CYUI01015925v1          262086 35 +    417917 aaatacacactacacacagcacacacaaaccacac
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=1130.000000
s hg38.chrX_KI270880v1_alt        185736 5 +    284869 taaac
s panTro5.chrX                    349510 5 + 155549662 TAAAT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          262121 5 +    417917 taaac
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e panPan2.chrUn_NW_014024190v1     97300 1327 -    177848 I

a score=702.000000
s hg38.chrX_KI270880v1_alt        185741 4 +    284869 acac
s panTro5.chrX                    349515 4 + 155549662 ACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1     98627 4 -    177848 acac
i panPan2.chrUn_NW_014024190v1 I 1327 C 0
s gorGor5.CYUI01015925v1          262126 3 +    417917 aca-
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=191.000000
s hg38.chrX_KI270880v1_alt        185745 2 +    284869 ac
s panPan2.chrUn_NW_014024190v1     98631 2 -    177848 ac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    349519 0 + 155549662 C
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          262129 0 +    417917 C

a score=12312.000000
s hg38.chrX_KI270880v1_alt        185747 51 +    284869 tatgcacaatacagataccagacaacagacacttac--aacacacaaaataca
s panTro5.chrX                 155195859 53 - 155549662 tatgcacaacacagatgccacacaacacgcacacacccaacacacaaaataca
i panTro5.chrX                 I 8 I 721
s panPan2.chrUn_NW_014024190v1     98633 51 -    177848 tatgcacaatgcagataccagacaacagacacttac--aacacacaaaataca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          262129 27 +    417917 tatgcgcaacaaagatgccacacaaca--------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=285075.000000
s hg38.chrX_KI270880v1_alt        185798 730 +    284869 cactacacacaacacacacaaaccacagtaaacacatacactgtgcaca--acagatgccacacaacacacacacata-caacacacaaaatacacacaaaccacact-aaacacatattctgtgcgcaaaa-cagatgccacata-aaacac-acaca-tgcaac-acacaaaatacct-actacatatacacaacactaaa-cacagacgttatgcacaacacag-atgccacacaatacacacacaaaacacacaaatacatactacacacaaca-caaacca-cactaaacacacactgcacccacaaaatacacattgcacacaacacat--gcaaacc-acactaaacacacactatgca-caatacagatacc--agacacca-cacacttacaacacagaaaata-cacactacacacaacacacacaaaccacactaaa-cacatacactctgcacaggacagacgtcacactgaatacacacacataacacataatctacaattacacgcaacagacgcagacgtcgc-taaacacaca-cactctgcacaggacagacaccacactaaacacacacacacacaA---------ATGTGGTAGGTCACCCCCACATCATG-AGCCCCAAGAGCCAG--TTGATTTC-TGCCTCAACAACGGTTGATTTGAAGGAACTTACGATGAATTAAGATGTGG-ACATCTggccgggcgcggtg-gctcacgcctgtaatcccagcactttgggaggccgaggcgc
s panTro5.chrX                    349519 738 + 155549662 CACTACACACA-CACACACAAACCACAGTAAA---ACACACTGTGCAAA-CACAGATGC-ACA-AACACACACACATAACAACACCACAAATACA----AACCACACT-AAACACATATCCTGTGCACAAAAACAGATGCCGCACATAAACACCACACAATGCAACTACACAAA-TACCTCACTACATATACACAACACTAAAACACAGACGTTATGCACAACACAGTATGCCACACAATCACCACACAAAACACACA--TAATTACTACACACAACAACAAACCAACACTAAACAAACACTGCATGCACAAAATACACACTACACACAA-ACATTGCCAAACCCACACTAAACACACACTATGCAACAATACAGATACCTCAGACAACA-CACACTTACAACACAGAAAATAACACACTACACACAAC-CACACAAACCACACTAAAACAC-TACA-TCTGCACAGGACGGACGTCA-ACTGAATACACACACA--ACACATAA-ATACAATTACACGCAACAGACACAGACGTCGCGTAAACAGACA-CACTGCCAACAGgacagacaccacactaaacacacacacacaccacacacacCAATGTAGT----CACCCCCACATCATGCAGCCCAATGAGTCATGTTTGATTTCATGCCTCAACAACGTTTGATTTGAAGGAACT-ACGATGAATTAAGATGTGGGACATCATGGcgggtgcggtgtgctcacgcctgtaatcc-agcactgtgggaggc-gaggcgc
i panTro5.chrX                 C 0 I 33
s panPan2.chrUn_NW_014024190v1     98684 732 -    177848 cactacacacaacacacacaaaccacagtaaacacatacactgtgcacaacacagatgccacacaacacacacacata-caacacagaaaatacacacaaaccacact-aaacacttatcctgtgcacaaaa-cagatgccacata-aaacac-acaca-tgcaac-acacaaaatacct-actacatatacacaacactaaa-cacagacgttatgcacaacacag-atgccacacaatacacacacaaaacacaca----aatactacacacaaca-caaacca-cactaaacacacactgcatgcacaaaatacacactacacacaacacat--gcaaacc-acactaaacacacactatgca-caatacagatacc--agacaaca-cacacttacaacacagaaaata-cacactacacacaacacacacaaaccacactaaa-cacatacactctgcacaggacggacgtcacactgaatacacacacataacacataatatacaattacacgcgacagacgcagacatcgc-taaacacaca-cactctgcacaggacagacaccacactaaacacacacacacacac-----acaAGTGTGGTAGGTCACCCCCACATCATG-AGCCCCAAGAGCCAG--TTGATTTC-TGCCTCAACAACGGTTGATTTGAAGGAACTTACGATGAATTAAGATGTGG-ACATCTggccgggtgcggtg-gctcacgcctgtaatcccagcactgtgggaggccgagacgc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          262156 679 +    417917 caccacacccaacacacacaaaccacagtaaacacatacactgtgcacaacacagatgccacacaacacacacacata-caacacacaaaataca----aaccacactaaaacacatatcctgtgcacaaaa-cagatgccacata-gaacac-acaca-tgcaaacacaacaaatacct-actacatatacacaacactaaa-cacagacgttatgcacaacacag-atgccacacaatacacacacaaaacacacaaatacgtactacacacaaca------------------------------------------------------------caaacc-acactaaacacacactatgca-caatacagatacc--agacaacaccacacttaccacacagaaaata-tacactacacacaacacacacaaaccacactaaa-cacatacactctgcacaggacagacctcacactgaatacacacacataacacataatatacaattacacacaacagacacagacgtcgc-taaacacacaccactctgcacaggac-gacaccacactaaacacacacacacacac-----acaAATGTGGTAGGTCACCCCCACATCATG-AGCCCCAAGAGCCAG--TTGATTTC-TGCCTGAACAACGGTTGATTTGAAGGAAGTTACGATGAATTAAGATGTGG-ACATCTggccgggtgcggtg-gctcacgcctgtaatcccagtactttgggaggccgaggcac
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=13092.000000
s hg38.chrX_KI270880v1_alt        186528 27 +    284869 gtggtggtcaggagGGTTGGATcctca
s panTro5.chrX                 155196633 27 - 155549662 gtggtggtcatgaggGTTGGATcctca
i panTro5.chrX                 I 721 n 33
s panPan2.chrUn_NW_014024190v1     99416 27 -    177848 gtggtggtcatgaggGTTGGATcctca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          262835 26 +    417917 gt-gtggtcacgaggGTTGGATcctca
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=74266.000000
s hg38.chrX_KI270880v1_alt        186555 182 +    284869 tgaatgggattcatcccttat-aaaagag-acttc---agGCCG-GACGAAGGggcgcccaccacgaagcccggctaattttttgtatttttggtacag--acggggtttcaccgtgttggccaggatggtctcgatctcttgacctcg---tgatccgccctccttggcct---cccaaagcgctgggattacag
s panTro5.chrX                    350290 193 + 155549662 TGAATGGCGATCATCCCTTATGAAAAGAGCAcctccccaggctgcgacgaagggggccccaccaccaagcccggc-acttttttgtattatgggtacaagaacggggtttcaccgtgttggccagg-tggtctcaatctct-gacctccagctgatccgccctcctcggccctacccaaaattgctgggattacag
i panTro5.chrX                 I 33 I 4
s panPan2.chrUn_NW_014024190v1     99443 182 -    177848 tgaatgggattcatcccttat-aaaagag-acctc---agGCCG-GACGAAGGggcgcccaccaccaagcccggctaattttttgtattttgggtacag--acggggtttcaccgtgttggccaggatggtctcaatctcttgacctcg---tgatccgccctcctcggcct---cccaaattgctgggattacag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          262861 181 +    417917 tgaatgggattcat-ccttat-aaaagag-acctc---agGCCCGGACGAAGGggcgcccaccacc-agcccggctcattttttgtattttgggtacag--acggggtttcaccgtgttggccaggatggtcttgatctcttgacctcg---tgatccgccctccttggcct---cccaaagtgctgggattacag
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=803.000000
s hg38.chrX_KI270880v1_alt        186737 6 +    284869 gcgtga
s panPan2.chrUn_NW_014024190v1     99625 6 -    177848 gtatga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          263042 6 +    417917 gtggga
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    350483 4 + 155549662 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=177776.000000
s hg38.chrX_KI270880v1_alt        186743 373 +    284869 gctaccacaccc--agcTTCTCAATtttttaaaa--ctgagattaagtttgcatggcacgcaagcaatcctttcaaaagtgaacagttcagggacgtgtgtgtgcatttacaatgttgCTGTACATTTACAATGAGAGGGATTGGGGGTGTGTCTGTTTCATAGGGTTCCTTCTGGGGGAGCAAAATATTCTAGGAATAGAATTTTccagaaggaaacctatcaaacagtcacagccccaatccctctctctcagcccctggcagtcacaaagctcctttctgtctcaacgaatttgt-ctgttctgCGTTTATTTTTTAATAGACTTGCTTAT---ACATAGAAAAGAATTTCAAAGTTTGG-CCACTGCTGTGCTTGCTG
s panTro5.chrX                    350487 374 + 155549662 gctaccacacACCAAGCTTCTCAATtttttaaaaaactgagattaagtttgcatg-catgcaagcaatcatttcaaaagtgaacagttcagggacatgtgtg--catttacaatgttggtgtacatttacaatgagagggattgggggtgtgactgtttaatagggttccttctgggggagcaaaatattctaggaatagaattttccagaaggaaacctatgaaacagtcacacccccaatccctctctctcagcccctggcagtcacaaagctcctttctgtctctacgaatttgt-ctgttctgCGTTTATTTTTTAATAGACTTGCTTAT---ACATAGAAAAGAATTTCAAAGTTTGG-CCACTGCTGTGCTTGCTG
i panTro5.chrX                 I 4 C 0
s panPan2.chrUn_NW_014024190v1     99631 371 -    177848 gctaccacaccc--agcTTCTCAATtttttaaaa--ctgagattaagtttgcatggcatgcaagcaatcatttcaaaagtgaacagttcagggacatgtgtg--catttacaatgttggtgtacatttacaatgagagggattgggggtgtgactgtttaatagggttccttctgggggagcaaaatattctaggaatagaattttccagaaggaaacctatgaaacagtcacacccccaatccctctctctcagcccctggcagtcacaaagctcctttctgtctctacgaatttgt-ctgttctgCGTTTATTTTTTAATAGACTTGCTTAT---ACATAGAAAAGAATTTCAAAGTTTGG-CCACTGCTGTGCTTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          263048 368 +    417917 cctaccacactc--agcTTCTCAATtttttaaaa--ct-agattaagtttgcacg-catgcaagcaatcatttcaaaagtgaaca-ttcaggacagtgtgtg--catttacaatgttgGTGTACATTTACAATGagagggactgggggtgtgactgtttaataggtttccttctgggag---caaatattcta-gaatagaattttccagaaggaaacctattaaacagtcacacccccaatccctctctctcagcccctggcagtcacaacgctcc-ttctgtctctacgaatttgtcctgttctgCGTTTATTTTTTAATAGACTTGCATATCCAACATAGAAAAGAATTTCAAAGTTTGGCCCACTGCTGTTCTTCCTG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        176591 2656 -    811265 I
e cerAty1.NW_012001098v1          229358 789 -   1025902 I
e colAng1.NW_012115411v1          339045 874 +   1230721 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=80074.000000
s hg38.chrX_KI270880v1_alt        187116 47 +    284869 CTGGTGGCTATGGGGTCTTGATACTTCTTAGGATATCCCCCTAGGAT
s panTro5.chrX                    350861 47 + 155549662 CTGGTGGCTATGGGGTCTTGATACTTCTTAGGATATCCCCCTAGGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    100002 47 -    177848 CTGGTGGCTATGGGGTCTTGATACTTCTTAGGATATCCCCCTAGGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          263416 46 +    417917 CTGGTGGCTATGGGGTCTTGATACTTCTTA-GATACCCCCCTAGGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          230147 47 -   1025902 CTGGTGGCTTTGGGGTCTTGATACTTCTTAGGATGTCCCCTTAGGAT
i cerAty1.NW_012001098v1       I 789 I 55
s chlSab2.chrUn_KE147541v1        179247 47 -    811265 CTGGTGGCTTCGGGGTCTTGAGACTTCTTAGGACGTCCCCTTAGGAT
i chlSab2.chrUn_KE147541v1     I 2656 I 128
s colAng1.NW_012115411v1          339919 47 +   1230721 CTGGTGGCTACGCGGTCTTGATACTTCTTAGGATGCCCCCTTAGGAT
i colAng1.NW_012115411v1       I 874 I 55
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=195224.000000
s hg38.chrX_KI270880v1_alt        187163 169 +    284869 AACATCAGGGTTCCTGAGGACATCTGACttctgttc-----ttttttttttttttttgagatggagtctcgctcttgtcacccaggctggagtgcagtggctcgatctcagctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctg
s panTro5.chrX                    350908 167 + 155549662 AACATCAGGGTTCCTGAGGACATCTGACttctgttc-------ttttttttttttttgagatggagtctcgctcttgtcacccaggctggagtgcagtggcgcggtctcggctcactgcaacctttgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    100049 164 -    177848 AACATCAGGGTTCCTGAGGACATCTGACttctgttc----------tttttttttttgagacggagtctcgctcttgtcacccaggctggagtgcaatggcgcggtcttggctcattgcaacctttgcctcctgggttcaagcgattctcctgcttgagcctcccgagtagctg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          263462 163 +    417917 AACATCAGGGTTCCTGAGGACATCTGACTTCTGttc-----------ttttttttttgagacggagtctcgctcttgtcacccaggctggagtgcagtggtgcgatctcagctcattgcaacctttgcctcctgggttcaagcgattctcctgcctcggcctcccgagtaactg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1          230249 173 -   1025902 AACATCAGAATCCCTGAGGACATCTGACTTCCGttcttttattattattattattttgagatggagtctcgctc-tgttgcccaggctggagtgcagtggtgtgatctcggctcattgcaacctctgcctcccgggttcaagcgattcttctgcctcagcctgctgagtagctg
i cerAty1.NW_012001098v1       I 55 C 0
s colAng1.NW_012115411v1          340021 171 +   1230721 AACATCAGAATTCCTGAGGACATCTGACttctgttctct--ttttttttttttttttgagacggagtctcactc-tgtcgcccaggctggagtgcagtggtgtggtctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccatgtagctg
i colAng1.NW_012115411v1       I 55 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        179294 128 -    811265 I
e rheMac8.chr6                 143321795 2274 + 180051392 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=150519.000000
s hg38.chrX_KI270880v1_alt        187332 108 +    284869 ggatgacaggtgccctccgccacgcccggctaatttttgta-tttttagttgagatagggtttcaccatgttggccaggat-ggtctcgatctcctgacctcaggtgatc
s panTro5.chrX                    351075 108 + 155549662 ggattgcaggtgccctccaccgtgcccggctaatttttgta-tttttagttgagatagggtttcaccatcttggccaggat-ggtctcgaactcctgacctcaggcgatc
i panTro5.chrX                 C 0 I 301
s panPan2.chrUn_NW_014024190v1    100213 109 -    177848 ggattgcaggtgccctccaccgtgcccggctaatttttgtattttttagttgagatggggtttcaccatcttggccaggat-ggtctcgaactcctgacctcaggcgatc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          263625 108 +    417917 ggattaca-gtgccctccaccatgcccggctaatttctgta-tttttagttgagatagggtttcaccatcttggccaggatgggtctggaactcctgacctcaggcgatc
i gorGor5.CYUI01015925v1       C 0 I 8
s rheMac8.chr6                 143324069 107 + 180051392 ggatgacaggtgcccaccacc-cacccggctaatttttgta-tttttagtagagacggggtttcaccgtgttggccaggct-ggtctcgaacccctgacctcaggctgtc
i rheMac8.chr6                 I 2274 C 0
s cerAty1.NW_012001098v1          230422 108 -   1025902 ggactacaggtacccaccaccatgcccagctaatttttgta-ttcttactagagatgaggtttcactacattggccaggct-ggtcttgaacccctgacctcaggctgtc
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          340192 106 +   1230721 ggattacaggaatgcaccaccacacctggatca-ttttgta-ttttcagtagagatgggg-ttcaccatgttggccaggtt-ggttttgaacccctggcctcaggctgtc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        179294 128 -    811265 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M

a score=14777.000000
s hg38.chrX_KI270880v1_alt        187440 18 +    284869 cacctgccttggcctccc-
s panTro5.chrX                    351484 18 + 155549662 cacccgcctcggtctcct-
i panTro5.chrX                 I 301 C 0
s panPan2.chrUn_NW_014024190v1    100322 18 -    177848 cacccatcttggcctccc-
i panPan2.chrUn_NW_014024190v1 C 0 I 1432
s rheMac8.chr6                 143324176 19 + 180051392 cacccacctcggcttctcc
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          230530 19 -   1025902 cacccatctcagcttctcc
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          340298 19 +   1230721 cacccatctcggcttcccc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        179294 128 -    811265 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          263733  8 +    417917 I

a score=51842.000000
s hg38.chrX_KI270880v1_alt        187458 82 +    284869 aaagtgctgtaattacaggcatgaaacaccgtgcccggccGAAttctgttcttt---------ttgttgacatggagttgcgccctcgtc-a
s panTro5.chrX                    351502 82 + 155549662 aaagtgctggaattacaggcatgagccactgtgcccagccGACttctgttcttt---------ttgttgagatgcagtctcgctcttgtc-a
i panTro5.chrX                 C 0 C 0
s rheMac8.chr6                 143324195 81 + 180051392 aaagtgttggaataacagacatgagccaccgtgcccagccAAAttctgttcttt---------ttgttgagatggagtcttgctctgtct--
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          230549 81 -   1025902 aaagtgttggaatcacaggcatgagccaccatgcccagccAAAttctgttcttt---------ttgttgagatggagtcttgctctgtct--
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          340317 91 +   1230721 aaagtgttggaattacaggcgtgagccaccatgcccagccAAAttctgttttttatattgttgttgttgagatggagtctggctcttgctg-
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        179294 128 -    811265 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          263733  8 +    417917 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=68165.000000
s hg38.chrX_KI270880v1_alt        187540 64 +    284869 cccaggctggagtgcagtgctgtggtctcggctcactgcaacctccgcctcctgggttcacacc
s panTro5.chrX                    351584 64 + 155549662 cccaggctggagtgcagtggtgcgatctcagctcactgcaagctctgcctcccgggttcaagcg
i panTro5.chrX                 C 0 C 0
s rheMac8.chr6                 143324276 64 + 180051392 tgcaggctggagtgcagtggtgtgatctctgctcactgcaacctccgcctcccgggttcaagtg
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          230630 64 -   1025902 tgcaggctggtgtgcagtggcacgatctccactcactgcaacctccgcctcccgggttcaagtg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        179422 63 -    811265 cccaggctggagcgcagcggtgtggt-tcggctcattgcagcctccgcctcccgggttcaagcg
i chlSab2.chrUn_KE147541v1     I 128 C 0
s colAng1.NW_012115411v1          340408 64 +   1230721 cccaggctggagtgcagtggcacgatctccgctcaccgcaacctctgcctcccgggttcaagtg
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e macNem1.NW_012017243v1          327369 2905 +  25972781 M
e gorGor5.CYUI01015925v1          263733  8 +    417917 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=241150.000000
s hg38.chrX_KI270880v1_alt        187604 145 +    284869 attctcctgcctcagtctcccgagtacctgggactacaggtgcccaccaccacgcccggctaattttt--gtatttttactagagatggggtttctccatgttggccaggctggtctcgaactcctgacctcaggtgattcacctgc
s panTro5.chrX                    351648 146 + 155549662 attctcctgcctcagcttcccaagtagctgggattacaggcgcctgccaccacgcctggctaattttt-tgtgtttttagtagagatggggtttcaccaggttggccaggcttgtctcgaactcctgacctcaggtgattcacctgc
i panTro5.chrX                 C 0 C 0
s rheMac8.chr6                 143324340 147 + 180051392 attctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccaggcctggctcatttttctgtatttttagtagagacagggtttatccgtgttggccaggatggtctcgaattcctgacctcaggtgatccacctgc
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          330324 147 +  25972781 attctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccaggcctggctcatttttttgtatttttaggagagacggggtttcaccgtgttggccaggctgatctcgaattcctgacctcaggtgatccacctgc
i macNem1.NW_012017243v1       M 2905 C 0
s cerAty1.NW_012001098v1          230694 147 -   1025902 tttctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccaggcctggctcatttttttgtatttttagtagagacggggtttcaccatgttggccaggctgatctcgaactcctgacctcaggtgatccacctgc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        179485 147 -    811265 attctcctgcctcagcctcccgagtagctgggatgacaggtgcccgtcaccacgcccggctcgtttttttgtatttttagtagagacggggtttcaccatgttgaccaggttggtctcgaactcctgacctcaggtgatccacctgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          340472 147 +   1230721 attctcttgcctcagcctcccgagtagctgggattacaggtgtgcaccaccacgcccagctcatttttttggatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtagttcacctgc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e gorGor5.CYUI01015925v1          263733   8 +    417917 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=557608.000000
s hg38.chrX_KI270880v1_alt        187749 255 +    284869 ctcagcctccccaaagtgctgggatgacaggcgtgagccaccactcccagACTGA-TTTATTTTCTTTAAACAAAGCCCAGGGGCCACCGTGAGATTATGTCACCTCTCTGTGGTGTTTTTCCCCTTTTTATCCAATATATTGCATTCTGAGACACATTTCTAATGTACAGAAAGAGATGTTCATGCTTCTTGCACTTTTTTTT-----CAGAAGTTAACGCTAAATCTATGTGTCTTGGCCTCTTaaaaacaaaacaaaa
s panTro5.chrX                    351794 254 + 155549662 ctcagtctccc-aaagtgctgggattacaggagtgagccaccactcccagACTGA-TTTATTTTCTTTAAACAAAGCGCAGGGGCCACTGTGAGATTATGTCACCTCTCTGTGGTGTTTTTCCCCTTTTTATCCAATATACTGCATTTTGACACACATTTCTACCGTACAGAAAGACATGTTCATGCTTCTTGCACTTTTTTTTT----CAGAAGTTA-CCCTAAATCTATGTGTCTTGGCCTCTTaaaaacaaaacaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          263741 252 +    417917 cttggcctccc-caaatgct-ggatttcaggcgtgagccaccactcccagACTGATTTTATTTTCTTTAAACAAAGCCCAGGGGCCACCGTGAGATTATGTCACCTCTCTGTGGTGTTTTTCCCCTTTTTATCCAATATATTGCATTTTGAGACACATTTCTAATGTACAGAAAGAGATGTTCATGCTTCTTGCACTTTTTTTT-----CA-AAGTTA-CCCTAAATCTATGTGTCTTGGCCCTCTTAAAACAAAACAAAA
i gorGor5.CYUI01015925v1       I 8 C 0
s rheMac8.chr6                 143324487 258 + 180051392 ctcggcctccc-aaagtgctgggatgacaggcgtgagccaccatgcccggACTAA-TTTATTTTCTTTAAACAAAGCCCAGGGGCCACCGTGAGATTATGTTACCTCGCTATGGTGTTGTTCCTCTTTTTATCCAATATCCTGCATTTTGAGACACATTTCTAACATACAGAAAGAAATGTTCATACTTCTCGCATTTTTTTGTTTTTGCAGAAATTA-CCCTAAATCCATGTGTCTTGGCCTCTTAAAAACAAAACAAAA
i rheMac8.chr6                 C 0 I 754
s macNem1.NW_012017243v1          330471 258 +  25972781 ctcggcctccc-aaagtgctgggatgacaggcgtgagccaccacgcccggACTAA-TTTATTTTCTTTAAACAAAGCCCAGGGGCCACCGTGAGATTATGTTACCTCGCTATGGTGTTGTTCCTCTTTTTATCCAATATCTTGCATTTTGAGACACATTTCTAACATACAGAAAGAAATGTTCATACTTCTCGCATTTTTTTGTTTTTGCAGAAATTA-CCCCAAATCCATGTGTCTTGGCCTCTTAAAAACAAAACAAAA
i macNem1.NW_012017243v1       C 0 I 1309
s cerAty1.NW_012001098v1          230841 258 -   1025902 ctcggcctccc-aaagtgctgggattataggcgtgagccaccacgcctggACTGA-TTTATTTTCTTTAAACAAAGCTCAGGGGCCACCGTGACATTATGTCACCTTGCTATGGTGTTGTTCCTCTTTTTATCCAATATCCTACATTTTGAGACACATTTCTGACATACAGAAAGAAATGTTCATGCTTCTCGCATTTTTTTGTTTTTGCAGAAATTA-CCCTAAATCCATGTGTCTTGGCCTCTTAAAAACAAAACAAAA
i cerAty1.NW_012001098v1       C 0 I 1985
s chlSab2.chrUn_KE147541v1        179632 258 -    811265 ctcggcctccc-aaagtgctgggataacaggcgtgagccaccgcgcctggACTGA-TTTATTTTCTTTAAACAAAGCCCAGGGGCCACCGTGAGGTTATGTCACCTCGCTATGGTGTTGTTCCTCTTTTTATCCAATATCCTGCATTTTGAGACACATTTCTAACATACAGAAAGAAATGTTCATGCTTCTCACATTTTTTTGTTTTTGCAGAAATTA-CCCTAAATCCATGTGTCTTGGCCTCTTAAAAAGAAAACAAAA
i chlSab2.chrUn_KE147541v1     C 0 I 1324
s colAng1.NW_012115411v1          340619 258 +   1230721 ttcggcctccc-aaagtgctgggattacaggcatgagccatggcgcccggACTGA-TTTATTTTCTTTAAACAAAGCCCACGGGCTATCGTGAGATTATATCACCTCGCTATGGTGTTGTTCCTCTTTTTATCCAGTATCCTGCATTTTGAGACACATTTCTAATATACAGACAGAAATGTTCATGCTTCTTGCATTTTTTTGTTTTTGCAGAAATTA-CCCTAAATCCATGTGTCTTGGCCTCTTAAAACCAAAACAAAA
i colAng1.NW_012115411v1       C 0 I 31
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=56279.000000
s hg38.chrX_KI270880v1_alt        188004 301 +    284869 ccaaaaaaaacaaaCCTACACTTCCATAGTTGAAAAACTGGACTGGTTTTGGGTGCTACCACACACGTCTCACAACAAACACAGTTGAGAATCAAGCGACTGTTTCAATAGCTCATAAATGGTGGTGAGAAAAGCCTGTTTGTAACCACTTCAGCATTTGAAATTAAACTCATCATTTAAGGATTTCTAAAGGTAATCATTTGGTCAACAACAGCAAAAAGTATTCCCTTTCTTGCCTGCCTCCC------------tccttcctgtccttccctccttcccttcttccttccttccttcctgtccttccttc
s panTro5.chrX                    352048 312 + 155549662 c-aaaaaaaacaaaCCTACACTTCCATAGTTGAAAAACTGGACTGGTTTTGGGTGCTACCACACACGTCTCACCACAAACGCAGTTGAGAATCAAGCGACTGTTTCAATAGCTCATAAATGGTGGTGAGAAAAGCCTGTTTGTAACCACTTCAGCATTTGAAATTAAACTCATCATTTAAGGATTTCTAAAGGTAATCATTTGGTCAACAACAGCAAAAACTAttcctttccttccctgcctccctcttttcctccgtccttcctgtccttccctccttcccttcttccttcctttcttccctcccttccttc
i panTro5.chrX                 C 0 I 12997
s gorGor5.CYUI01015925v1          263993 237 +    417917 A----------AAACCTACACTTCCATAGTTGAAAAACTGGACTGGTTTTTGGTGGTACCACACACGTCTCACAACAAACACAG-TGAGAATCAAGCGGCTGTTTCAATAGCTCATAAATGGTGGTGAG-AAAGCCTG-TTGTAACCACTTCAGCATTTGAAATTAAACTCATCATTTAAATA-TTCTAAAGGTAATCA-TTGGTCAACAACAGCAAAAACCATTCcctttcttccctgcctccc------------tcttttc-------------------------------------------------
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877  31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=9784.000000
s hg38.chrX_KI270880v1_alt        188305 150 +    284869 cttccctccttccttccttcAtttctttcttttcttctttctctctttctttctttttctttcCCAC-AGGGAAAGGGGCGCCGTGAATGTAGCCCATATAGACCTAGAAGAGAGATGATCAGctatcatctctctctctttctctatcta
s gorGor5.CYUI01015925v1          264230 138 +    417917 ---ccctccttccttccttcctttctttcttttcttc-------ctttc-ttctttttctttccCACGGGGGAAAGGGGTGCCGTGAATGTAGCCCATATAGACCTAGAAGA-AGATGatcatccatcatctctctctctttc-ctatcta
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e saiBol1.JH378345                251107 598 +    465904 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877  31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=16555.000000
s hg38.chrX_KI270880v1_alt        188455 163 +    284869 ttaatctatctatatatct---tacctatcGatg-tatctattat-atctatgtat----cta--tatctatttatgtattctatgtatctat--tttatctatttatctatatctattgtatgtatctattatatctatgtatctatat---ctatttatgtattctatgtatctatt
s gorGor5.CYUI01015925v1          264368 158 +    417917 ttaatctatctatatatct---tacctatctatg-catctattat-atatatgtatctagcta--tatctatttatgtattctatgtatctat--tttatcta-ttatctttatctattctatg----tattatatctatgtatcta-------tatttatgtattctatgtatctatt
i gorGor5.CYUI01015925v1       C 0 I 7
s saiBol1.JH378345                251705 159 +    465904 TTATCctgtctatctacctatgtaactaccaccgttatctattatcacctgtgcatctgtctgtctgtctgtctatcta-tctatctatctatcatgtatcta-tcagcttcatc-------------tatcatctCTGTGTATCTATATATAATATCTA-----TCTGCACATGTATT
i saiBol1.JH378345             I 598 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877  31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=20254.000000
s hg38.chrX_KI270880v1_alt        188618 667 +    284869 ttatctatgtatcta--tatctatttattctatgtatctattatatctgtgtatctatatctatttatgtattctatgtatctatttatctatatctattc-tatgtatctattatatctatgtatccatatctatttatgtattctatgtatctattttatctatttatctat--atctat---tgtatgtatctattatatctatgtatcta--tatctatttatgtat-----tctatgtatctattt---tatctatttatctat--atctattgtatgtatctattatatctatgtatctat------atctatttatgtattctatgtatctat-------tttatctatgtatctatat-ttattctatgtatctat---tatatctgtgtatcta--tatctatttatgtattctatgtatctatttatctatatctattctatgtatctattatatctatgtatccatatctatttatgtattctatgtatctattt---tatctatttatcta--tatctattgtatgtatctattatatctatgtatctatatctatttatgtat---tctatgtatctattt---tatctatgtatctat------atctattg---tatgtatctattatatctatgtatctat--atctatttatgtattctatgtatctattttatgtatgtatctat--atctatttat---tctatgtatctat---ta
s saiBol1.JH378345                251864 687 +    465904 ATACCGATGCATCTAAGtatctatctat---------ctatca-atcaatctatctat--ctatctatgtat-ctatctatctgtctatctatgtatctacgtatgtgtctat-atatttctctatc--tatctatccatgtgt-ctgtttatct-ttctatctatgtgtctatttatctatctatgtgtgtatctatc-tatctatttatctaggtatctatttatgtctgtccatctgcgtatctatctacctgtctgtctatctatctatctatc-tatgtatccat-----ctatgtatctatctaactatctatctatgtat-ctatgtatccatatgtctatctatctatgtatctatgtattgatctatctatctatgtgtctatctatctatctaagtatctatctatctgt-ctatcaatctatctatctatgt---gtctatctatttatt-tatctaggtatc--tatctatttat-----ctgtctgtccatctgcctatctatctatctacctatctgtc-----tatctatca-atcaatgtgtctaa--ctatctatgtatctatctatgtatctatctaagtatctatatgtctatctatcaatcaatcaatctatctatctatc-tatctatgcatccatccatctatctgtctgt-ctatctatctatct-atctatctatctatctatctatctatgtatgtatgtatctatctgtc
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877  31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I
e gorGor5.CYUI01015925v1          264526   7 +    417917 I
e panPan2.chrUn_NW_014024190v1    100340 1432 -    177848 I

a score=6979.000000
s hg38.chrX_KI270880v1_alt        189285 45 +    284869 tatctatgta--tatctatttatgtat---tctatgtatctattt---------atcta
s panPan2.chrUn_NW_014024190v1    101772 54 -    177848 tatctatcta--tacctatttatgtat---tctatgtatctattttatctatttatcta
i panPan2.chrUn_NW_014024190v1 I 1432 C 0
s saiBol1.JH378345                252551 50 +    465904 tgtctatgtatgtatatatctatgtatctatctaagtatctatct---------atcta
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877 31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I
e gorGor5.CYUI01015925v1          264526  7 +    417917 I

a score=61529.000000
s hg38.chrX_KI270880v1_alt        189330 239 +    284869 --tatctat---tctatgtatctat-------tatatctatgtatcca--tatctatttat---gtattctatg----tatctattttatctat----ttatctatatctatttattctttgtatctattatatctatgtatctatat----tctatgtatctattatatttatctatgtatctatgtatgtatgtatc-atctatcttatcatgtatttattatatctat-tatctatcttatctatcatctatctattgcatctatta
s panPan2.chrUn_NW_014024190v1    101826 239 -    177848 --tatctat---tctatgtatctat-------tatatctatgtatcta--tatctatctat-------tctatg----tatctattttatctatgtatctatctatatctatttattctatgtatctattatatctatgtatctatatctattctatgtatctattatatttatctatgtatctatgtatgtatgtatc-atctatcttatcatgtatt----atatctat-tatctatcttatctatcatctatctattgtatctatta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          264533 219 +    417917 --tctatat---tctatg----tat-------tatatctatgtatcta--tctatatctattatgtattctatgtatctatctattttatctat----gtatctata-----ttattctatgtatctattatatctatgtatctatc-----tatatctatctattatatt----tatgtatctat-----tatgtatc-atctatcttatcatgtatt----atatctat-tatctatcttatctatc----atctattgtatctatta
i gorGor5.CYUI01015925v1       I 7 C 0
s saiBol1.JH378345                252601 232 +    465904 tctatctatctatctatgtatctatctatgcatccatctatgtatctatctatctatctat---ctg-tctatc----tatcta-tctatctat----ctatctatctatcatctatctatgtatc-----tatctatgcatcca-------tccatgtatctatc-tatctatctatctatctatctatgtatgtatctatctgtctgtctatgtatgtat-atatctatgtatctatctaagt--------atcta-tgtatctat--
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e colAng1.NW_012115411v1          340877  31 +   1230721 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I

a score=31271.000000
s hg38.chrX_KI270880v1_alt        189569  90 +    284869 tctatct-------------------attatatctatttatatcta----tcatctatg----tatctattatatctat---catctatc----------------------ttatctatcatctattatatctatc-------------atctc
s panPan2.chrUn_NW_014024190v1    102065 109 -    177848 tctatctgtctatcatctatgtatctattatatctatctatatcta----tcatctatg----tatctattatatctat---catctatc----------------------ttatctatcatctattatgtctatc-------------atctc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          264752 122 +    417917 tctgtca--------tctatgtatctattatatc----tatatcta----tcatctatg----tatctattatatctatatctatctatcatctatgtatctattatatctatcgtctatcatctattatatctatc-------------atctc
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1          340908 111 +   1230721 tctatct-------------------atcatatctatctatatctatatgtcatctatgtatctatctattatacctat---catctatc----------------------ttatcgatcatctattatgtctatctatctatttatctatctc
i colAng1.NW_012115411v1       I 31 I 2
s saiBol1.JH378345                252833  72 +    465904 -ctatct-------------------atc-tatctatctat---------gtatctaag----tatcta-tgtgtctgt------ctgtc-----------------------tgtctgtc------tgtgtctgta-------------atcta
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1          185157 7745 -    350446 I
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        179890 1324 -    811265 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I
e rheMac8.chr6                 143324745 754 + 180051392 I
e macNem1.NW_012017243v1          330729 1309 +  25972781 I

a score=171519.000000
s hg38.chrX_KI270880v1_alt        189659 76 +    284869 tc----atctatgtatctatgtattatatctatctatc-atctatctatccatctat-ctatgt----atgtatgtatctgtctat
s panPan2.chrUn_NW_014024190v1    102174 80 -    177848 tctatcatctatgtatctatgtattatatctatctatc-atctatctatccatctat-ctatgt----atgtatgtatctgtctat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          264874 81 +    417917 tctatcatctatgtatctatgtattatatctatctatc-atctatctatccatctatgttatgt----atgtatgtatctgtctat
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143325499 76 + 180051392 ----tcatgtatgtatctatgtgttatacctatctatc-atgtatctatcaatctat-ctatgt----atctatgtatctatctat
i rheMac8.chr6                 I 754 I 5
s macNem1.NW_012017243v1          332038 72 +  25972781 ----tcatctatgtatctatgtattatatctatctatc-atgtatctatctatctat-c----t----atctatgtatctatctat
i macNem1.NW_012017243v1       I 1309 I 5
s chlSab2.chrUn_KE147541v1        181214 76 -    811265 ----tcatctatgtatctatgtattatatctatctatc-atctatctatctatctat-ctatct----atctatctatctatctat
i chlSab2.chrUn_KE147541v1     I 1324 I 1
s manLeu1.NW_012108508v1          192902 77 -    350446 ----tcatctatgtatctatgtattatatctatctatctatctatctatctatctat-ctatct----atctatctatctatcttt
i manLeu1.NW_012108508v1       I 7745 I 1
s colAng1.NW_012115411v1          341021 76 +   1230721 ----tcatctatgtatctatgtattatatctatctatc-atgtatctatctatctat-ctatct----atctatctatctatctat
i colAng1.NW_012115411v1       I 2 I 13
s saiBol1.JH378345                252905 76 +    465904 ----tcccctgtgtatctaca----atatctacctccc-atctatgtatgtatATGT-GTGTGTTTGCACGGACGTATCTGCCTGT
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I
e cerAty1.NW_012001098v1          231099 1985 -   1025902 I

a score=238327.000000
s hg38.chrX_KI270880v1_alt        189735 75 +    284869 -tatctat----ctatccatctatctatcatcCAACTGGATTATCAATATCCGTGCTCCCACACATATTTCACTCTCTCT
s panPan2.chrUn_NW_014024190v1    102254 79 -    177848 -tatctatgtatctatccatctatctatcATTCAACTGGATTATCAATATCCGTGCTCCCACACATATTTCACTCTCTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          264955 74 +    417917 -tatctat----ctatccatctatctatcatcCAACTGGATTATCAATATCCATGCTCCCACACA-ATTTCACTCTCTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143325580 75 + 180051392 -tatctat----ccatccttctatctatcATCCAACTGGATTATCAATATCCATGCTTCCACACATATTtctctctctct
i rheMac8.chr6                 I 5 C 0
s macNem1.NW_012017243v1          332115 75 +  25972781 -tatctat----ccatccttctatctatcATCCAACTGGATTATCAATATCCATGCTTCCACACATATTtctctctctct
i macNem1.NW_012017243v1       I 5 C 0
s cerAty1.NW_012001098v1          233084 75 -   1025902 -tatctat----ccatccttctatctatcATCCAACTGGATTATCAATATCCATGCTTCCACACATATTtctctctctct
i cerAty1.NW_012001098v1       I 1985 C 0
s chlSab2.chrUn_KE147541v1        181291 75 -    811265 -catccat----ccatccacccatctatcatccaACTGGATTATCAATATCCATGCTTCCACACATGTTTCTCTCTCTGT
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1          192980 75 -    350446 -tatctat----ccatccttctatctatcATCCAACTGGATTATCAATATCCATGCTTCCACACATATTtctctctctct
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          341110 75 +   1230721 -tatctat----ccatccttctatctatcATCCAACTGGATTATCAATATCCATGCTTCCACACATGTTtctctctctct
i colAng1.NW_012115411v1       I 13 C 0
s saiBol1.JH378345                252981 75 +    465904 CTCTGTCC----CTACCCACCTGCCTGTCCCAC-ACAGGATTCTCAGCGTCCACACGTCCACGCCTCCctctgtctctgt
i saiBol1.JH378345             C 0 C 0
e otoGar3.GL873584                263478 4259 +  11138919 I
e panTro5.chrX                    352360 12997 + 155549662 I

a score=22950.000000
s hg38.chrX_KI270880v1_alt        189810 5 +    284869 CTCTC
s panPan2.chrUn_NW_014024190v1    102333 5 -    177848 CTCTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265029 5 +    417917 CTCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143325655 5 + 180051392 ctctc
i rheMac8.chr6                 C 0 I 4
s macNem1.NW_012017243v1          332190 5 +  25972781 ctctc
i macNem1.NW_012017243v1       C 0 I 963
s cerAty1.NW_012001098v1          233159 5 -   1025902 ctctc
i cerAty1.NW_012001098v1       C 0 I 2
s chlSab2.chrUn_KE147541v1        181366 5 -    811265 CTCTC
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1          193055 5 -    350446 ctctc
i manLeu1.NW_012108508v1       C 0 I 2
s colAng1.NW_012115411v1          341185 5 +   1230721 ctctc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                253056 5 +    465904 ctgtc
i saiBol1.JH378345             C 0 I 22
s otoGar3.GL873584                267737 5 +  11138919 CTCTT
i otoGar3.GL873584             I 4259 C 0
e panTro5.chrX                    352360 12997 + 155549662 I

a score=22305.000000
s hg38.chrX_KI270880v1_alt        189815  9 +    284869 TC--AACCTTG
s panPan2.chrUn_NW_014024190v1    102338 11 -    177848 TCTCAACCTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265034  9 +    417917 TC--AACCTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143325664  9 + 180051392 tc--aacctct
i rheMac8.chr6                 I 4 I 29
s cerAty1.NW_012001098v1          233166  9 -   1025902 tc--aacctct
i cerAty1.NW_012001098v1       I 2 I 29
s chlSab2.chrUn_KE147541v1        181373  9 -    811265 TC--AACCTCT
i chlSab2.chrUn_KE147541v1     I 2 I 29
s manLeu1.NW_012108508v1          193062  9 -    350446 tc--aacctct
i manLeu1.NW_012108508v1       I 2 I 29
s colAng1.NW_012115411v1          341190  9 +   1230721 tc--aacctct
i colAng1.NW_012115411v1       C 0 I 29
s saiBol1.JH378345                253083  9 +    465904 tc--AACCTCT
i saiBol1.JH378345             I 22 I 25
s otoGar3.GL873584                267742  9 +  11138919 CT--GACTTTT
i otoGar3.GL873584             C 0 C 0
e panTro5.chrX                    352360 12997 + 155549662 I
e macNem1.NW_012017243v1          332195 963 +  25972781 I

a score=1945060.000000
s hg38.chrX_KI270880v1_alt        189824 532 +    284869 CCAAAAGCAGGCAGAACGCAGCAGG-AAGTGACTCCCTCCCGATCCTTTG-CCCCAAGGGGCAGACACCCACCCGTAGGAAGCTGCATTCCTGGGGTCTGTGGTCATGTCACCG-TTAGCAATGTGGTACCTGGGCTGGACAAGAGAGTCAATTTACGGCTCTTTTGTGCTGAATATCAGAAAAGCCGATCATTCAATTATCTCAGCGTTACCTTTCACTGGCATTATTTCATT-CCTTGAAATGGC-TTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATTTGCCTCTTGCCGTCCTCTGAGGGCGATGATGAATGTTTAATAAGACACCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGGTA-G-AAAAAAAAATCAATTAC--TCTTCTTCTAGTGGCC----AGTG-ATCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAA-A-
s panPan2.chrUn_NW_014024190v1    102349 533 -    177848 CCAAAAGCAGGCAGAACGCAGCAGG-AAGTGACTCCCTCCTGATCCTTTG-CCCTGAGGGGCAGACACCCACCCGTAGGAAGCTGCATTCCTGGGGTCTGTGGTCATGTCACCG-TCAGCAACGTGGTACGCGGGCTGGACAAGAGAGGCAATTTACGGCTCTTTTGTGCTGAATATCGGAAAAGCCGATCATTCAATTATCTCAGCGTTACCTTTCACTGGCATTATTTCATT-CCTTGAAATGGC-TTTTCATTCCAATTATAGGTTTTCAT-GGACAAATTGTTGGATAATGTAATAATATTTGCCTCTTGCCGTCCTCTGAGGGCGATGATGAATGTTTAATAAGACACCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGGTA-G--AAAAAAAATCAATTGCTGTGTTCTTCTAGTGGCC----AGCG-ATCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAA-A-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265043 537 +    417917 CCAAAAGCAGGCAGAACGCAGCAGGAAAGTGACTCCCTCCCGATCCTTTGCCCCCGAGGGGCGGACACCACCCCG--AGAAGCTGCATTCCTGGGGTCTGTGGTCATGTCACTGTTCAGCAAC-TGGTACGCGGGCTGGACAAAAGAATCAATTTACGGCTCTTTTGTGCTGAATATCAGAAAAGCCGATCATTCAATTATCTCAGCGTTACCTTTCACTGCATTTATTTCATTGCCTTGAAATGGC--TTTCATTCCAATTATAGGTTTTCATGGGAGAAATTGTTGGATAATGTAATAATATTTGCCTCCTCCCGTCCTCTGAGGGCGATGATGAATG-TTAATAAGAC-CCAAAGTTGCAAAACCATTATGCACTTC-CAAAAGAGAGATGCCCATAT-AATGAATTAATAAAATAAATTATTGCAACCTGTATTGGGTA-GAAAAAAAAAATCAATTGCTGTGTTCTTCTAGTGGCC----AGCA-ACTTACTTTAATATGCTGGATTTTAGAGTTAATTAAATTAAGTTACGTCCTGTATTAAAAA-A-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143325702 531 + 180051392 CCAAAAGCAGGCAGAACGCGACAGG-AAGTGACTCCCTCCCGATTCCTCG-CCGGGAGAGGCAGACACCCACCTGTAGGGAGCTGCATTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAACGTGGTACCCGGGCTGGACA--AGAGTCAATTTACAACTCTTTTGTGCTGAGTATCAGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGCTTTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCTTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGACGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGATA-GGAAAAAAAAATCAATTAC--TGTTCTTCTCGTGGCC----AGCT-GTCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAA---
i rheMac8.chr6                 I 29 C 0
s macNem1.NW_012017243v1          333158 531 +  25972781 CCAAAAGCAGGCAGAACGCGACAGG-AAGTGACTCCCTCCCGATTCCTCG-CCGGGAGAGGCAGACACCCACCTGTAGGGAGCTGCATTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAACGTGGTACCCGGGCTGGACA--AGAGTCAATTTACAACTCTTTTGTGCTGAGTATCAGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGCTTTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCTTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGACGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGATA-GGAAAAAAAAATCAATTAC--TGTTCTTCTCGTGGCC----AGCT-GTCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAA---
i macNem1.NW_012017243v1       I 963 C 0
s cerAty1.NW_012001098v1          233204 531 -   1025902 CCAAAAGCAGGCAGAACACGACAGA-AAGTGACTCCCTCCCGATTCCCCG-CCGGGAGAGGCAGACACCCACCTGTAGGGAGCTGTATTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAACGTGGTACCCGGGCTGGACA--AGAGTCAATTTACAGCTCTTTTGTGCTGAGTATCAGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGCTTTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCTTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGACGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGATA-GGAAAAAAAAATC-ATTAC--TGTTCTTCTCGTGGCC----AGCTGGTCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAA---
i cerAty1.NW_012001098v1       I 29 C 0
s chlSab2.chrUn_KE147541v1        181411 531 -    811265 CCAAAAGCAGGCAGAATGCAAGAGG-AAGTGACTCCCTCCCGATTCCTCG-CCGGGAGAGGCAGACATCCACCTGTAGGGAGCTGTATTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAACGTGGTACCCGGGCTGGACA--AGAGTCAATTTACAGCTGTTTTGTGCTGAATATCAGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGCTTTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCTTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGATGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGATA-GAAAAAAAAAATCAATTAC--TGTTCTTCTCGTGGCC----AGCC-GTGTACTGT-ATATGCTGGATTTTAGATTTAATT-AATTAAGTTACGTCCTGTATTAAAAA---
i chlSab2.chrUn_KE147541v1     I 29 C 0
s manLeu1.NW_012108508v1          193100 533 -    350446 CCAAAAGCAGGCAGAACGCGACAGG-AAGTGACTCCCTCCCGATTCCTCG-CCGGGAGAGGCAGACACCCACCTGTAGGGAGCTGCACTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAACGTGGTACCCGGGCTGGACA--AGAGTCAATTTACAGCTCTTTTGTGCTGAGTATCAGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGCTTTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCTTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGACGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGATAGGAAAAAAAAAATCAATTAC--TGTTCTTCTCGTGGCC----AGCT-GTCTACTTT-ATATGCTGGATTTTAGAGTTAATT-AATTAAGTTACGTCCTGTATTAAAAAA--
i manLeu1.NW_012108508v1       I 29 I 3874
s colAng1.NW_012115411v1          341228 528 +   1230721 CCAAAAGCAGGCAGAACACAACAGG-AAGTGACTCCCTCCCGATTCCTCG-CCCGGAGAGGCAGACACCCACCTGTAGGGAGCTGCATTCCTGGGGTCTGTGGTCACGTCACAG-TTAGCAAGGTGGTACCC-GGCTGGACG--AGAGTCAATTTACAGCTCTTTTGTGCTGAATATCGGAACAACCGATCATTCAATTATCTCAGTGTTACCTTTCCCTGGCATTATTTCATT-CCTTGAAATTGC-TTTTCATTCCAATTATAGGTTTTCAT-GGAGAAATTGTTGGATAATGTAATAATATCGGCCTCTTTCTGTCCTCTGAGGGCGATTATGAATGTTTAATAAGACGCCAAAGTTGCAAAACCATTATGCACTTCTCAAAAGAGAGATG-CCATATAAATGAATAATAAGAATAAATTA-TGCAA-CTGTATTGGAT--GGAAAAAAAAATCAATTAC--TGTTCTTCTCGTGGCC----AGCC-GTCTACTTT-ATATGCTGGATTTTAGACTTAATT-AATTAAGTTACATCCTGTATTAAAAA---
i colAng1.NW_012115411v1       I 29 C 0
s saiBol1.JH378345                253117 487 +    465904 CCAAAATCAGGCCGAACACCACGGA-ACGTGATTCCCTCGGGATGCCTTG-TCCTGGGAGACAGACCGCCAC--------------GGTCCTGGGGTCTGTGGCCACGGCCCCG-TTAGCCACGTGGCACCCGGGCCGGACA--AGCGGCCACGTGAAGCTCGTTTGTGCTGAATATGAGAAAAGCCGCTCGTTCAATGATCCCCGTGTTCCC-----------------CGAG-CCTGGAAATCAC-TTTTCTTTCCAATTATGGGTCTTCAC-GGAGAAATCATTGGGTAATGTGATCACATTGGCGCGTCCCCTTCCTCCGAGGGCCGCTCGGGGCGTTTCATCGGACGCCAACGTCGCGAAG-CGTCGCGCGTTTCTCCAGCGAGACGGG-CCACATCAATGAATAATGGCAATAAATTA-TGCAG-GTGCATTGGGAA-G--AAGAGAAATCGATCCC--TGTGATTCCAGGGCTC----AGCC-AGGCAGTTC----------ATTGCGGAGTTAATT-GATTATGTTACAGCCCGTCCTGGAAA---
i saiBol1.JH378345             I 25 I 1
s otoGar3.GL873584                267751 519 +  11138919 -CCAAAGTGGGCAGGATGCAACAGG-AAGTGACTTCCTCC---------G-CCCCAGGAGGACAGCACTGGCCAGTAGGGATCTGTACTGCTGACGCCTATGGTCACTTAATAG-TTAGCGACGCCGTACCCAGGCTGGACA--AGAGTAATTATGCAGTGAGATTGTGCTGAATATCAGAAAAGCTGGTCATTAAATTACCGTGGTGTTACCTTTCCCCAGTGCTATGTTGCT-CTTCGAGATTGC-TTTTTATTCCAATTATAGATTTTTAT-GGAGAAATTGTTTGATAATATAATAATATTTGCCTCT-----TCCTCCAAGGGCGATTATGAATGTTTAATAAGGCACCAAAGTTGCAAAGGCATTATGAGCTTCTCAAAAGAGAGGTG-CGACATAAATGAATAATAAGAATAAATTA-TGCAA-CTGCATTGGGTT-A-AAAAAAAAATCAATCCT--TGTCCTTTCAAGGGCCACTGACCG-ATCTATTTG-ATATGCCGGGTTTTAAAGTTAATT-AGTTAAGTTACATCATGTATTAAAAA--A
i otoGar3.GL873584             C 0 C 0
e panTro5.chrX                    352360 12997 + 155549662 I

a score=56924.000000
s hg38.chrX_KI270880v1_alt        190356 20 +    284869 ACAAACGT-GTCAGC-----------------TTTTTT
s panPan2.chrUn_NW_014024190v1    102882 20 -    177848 ACAAACGT-GTCAGC-----------------TTTTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265580 21 +    417917 ACAAACGTGGTCAGC-----------------TTTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143326233 20 + 180051392 ACAAGCGC-GTCAGC-----------------tttttt
i rheMac8.chr6                 C 0 I 16
s macNem1.NW_012017243v1          333689 37 +  25972781 ACAAGCGT-GTCAGCttttttttttttttttttttttt
i macNem1.NW_012017243v1       C 0 I 16
s cerAty1.NW_012001098v1          233735 20 -   1025902 ACAAGCGC-GTCAGC-----------------TTTTTT
i cerAty1.NW_012001098v1       C 0 I 6
s chlSab2.chrUn_KE147541v1        181942 20 -    811265 ACAAGCGC-GTCAGC-----------------tttttt
i chlSab2.chrUn_KE147541v1     C 0 I 215
s colAng1.NW_012115411v1          341756 20 +   1230721 ACAAGCGT-GTCAGC-----------------TTTTTT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                253605 20 +    465904 ACAGACAC-CTCAGC-----------------TTTTTT
i saiBol1.JH378345             I 1 I 34
s otoGar3.GL873584                268270 19 +  11138919 ACAAACAT-GTCAGC-----------------TTTTT-
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e panTro5.chrX                    352360 12997 + 155549662 I

a score=312428.000000
s hg38.chrX_KI270880v1_alt        190376 171 +    284869 ACAG------------------------TTTTTTGCTTTTCCTGC-----CCTAATAGCGTGATGGTTCTATGGGGTGAGGTCCCCTACATCC------TGATTGAAATGAACGATTTCCCGGTGAAGCTCCGAGTTTCCACTGGAGGGAAAATGGTGACTGTCTCAAGAATTAG-CCTGGGAGACCCTGAAGAGCTTCAGAATATG
s panPan2.chrUn_NW_014024190v1    102902 171 -    177848 ACAG------------------------TTTTTTGCTTTTCCTGC-----CCTAATAGCGTGACGGTTCTATGGGGCGGGGTCCCCTACATCC------TGATTGAAATGAACCATTTCCCGGTGAAGCTCCGAGTTTCCACTGGAGGGAAAATGGTGACTGTCTCAAGAATTAG-CCTGGGAAACCCTGAAGAGCTTCAGAATATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265601 166 +    417917 ACA--------------------------TTTTTGC-TTTCCTGC-----CCTAATAGCGTGACGGTTCTATGGGGTGAGGTCCCCTACATCC------TGATTGAAATGAACCATTTCCCGGTGAAGCTCTGAGTTTCCACTGGAGGGAAAATGGTGACTGTCTCAAGAATTAG-CCT-GGAGACCCTGAAGAGCTTCAG-ATATG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143326269 164 + 180051392 aca-------------------------ttttttgcttttCCTGT-----CCAAATAGCATGGTGGTTCTA-----CGAGGTCCCCTACATCC------TGATGGAAAAGTACCATTTCCCGATGAAGCTGCAAGTTTCCACTGGAGGGAAAATGGTGACTCTCTCAAGAATTAG-CCT-GGAGACCCTGAACAGCTTCAGAATATG
i rheMac8.chr6                 I 16 C 0
s macNem1.NW_012017243v1          333742 164 +  25972781 ACA-------------------------TTTTTTGCTTTTCCTGT-----CCAAATAGCATGGTGGTTCTA-----CGAGGTCCCCTACATCC------TGATGGAAACGTACCATTTCCCGATGAAGCTGCAAGTTTCCACTGGAGGGAAAATGGTGACTCTCTCAAGAATTAG-CCT-GGAGACCCTGAACAGCTTCAGAATATG
i macNem1.NW_012017243v1       I 16 C 0
s cerAty1.NW_012001098v1          233761 162 -   1025902 ACA--------------------------TTTTTGCTTTTCCTGC-----CCAAATAGCATGGTGGTTCTA-----CGAGGTCCCCTACATCC------TGAT-GAAACGTACCATTTCCCGATGAAGCTGCAAGTTTCCACTGGAGGGAAAATGGTGACTCTCTCAAGAATTAGCCCT-GGAGACCCTGAATAGCTTCAGAATA-G
i cerAty1.NW_012001098v1       I 6 C 0
s colAng1.NW_012115411v1          341776 164 +   1230721 ACA-------------------------TTTTTTGCTTTTCCTGC-----CCAAATAGCATGGTGGTTCTA-----CGAGGCCCCATACATCC------TGACTGAAATGTACCATTTCCCAATGAAGCTCCAAGTTCTCGCTGGAGGGAAAATGGTGACTCTCTCAAGAATTAG-CCT-GGAGACCCTGAACAGCTTCAGAATATG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345                253659 178 +    465904 ACATATTAActttctttttctttctttctttgtttcttttcttgcttcctttcAATAGCATGACAGTTCCA-----TGGGGTGCGCTCCCCCC----------------------ATCCCCACTGACGCCCCAGGTTTT-ATTGGAGGGAAATTCCTGACTGTGCCAACCGCTGG-CATGGGACACcctgaatagcttcagactatg
i saiBol1.JH378345             I 34 C 0
s otoGar3.GL873584                268289 175 +  11138919 ACA--------------------------TTTTTATTTTTAATGC-----AGAAATAATAAAGGGATCCCATGGGGAGGGGTCCTCCCCCTCCATGTTCTGGGTGAAATGTGGCATTTCCCAAGAAAGCAAGACGTTTCTGTTTGAGGGAAGCTGGTATCTGACCCAAGAATCAT-CCCAGGAGACCCTGGAGAGATTCAGAAAATG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I

a score=7155.000000
s hg38.chrX_KI270880v1_alt        190547 17 +    284869 CCACC-AAAAAAAAA---AAA
s panPan2.chrUn_NW_014024190v1    103073 17 -    177848 CCACC-AAAAAAAAA---AAA
i panPan2.chrUn_NW_014024190v1 C 0 I 4
s gorGor5.CYUI01015925v1          265767 17 +    417917 CCACG-AAAAAAAAa---tat
i gorGor5.CYUI01015925v1       C 0 I 2
s rheMac8.chr6                 143326433 14 + 180051392 CCACC-AAAAAATAC------
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          333906 14 +  25972781 CCACC-aaaaaatac------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          233923 15 -   1025902 CCACCAAAAAAATAC------
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          341940 17 +   1230721 CCACC-aataaataaaca---
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                268464 10 +  11138919 ---CC-AAAAAGAA-------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e panTro5.chrX                    352360 12997 + 155549662 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I

a score=165640.000000
s hg38.chrX_KI270880v1_alt        190564 86 +    284869 ATACATATATATATATTGCAGGggccaggtggggtggctcatggctataatcccagcactttgggaggccgaggcaggtggatcag
s panTro5.chrX                    365357 86 + 155549662 atatatatatatatataGTAGGggccgggtggggtgggtcatggctgtaatcccagcactttgggaggccgaggctggtggatcag
i panTro5.chrX                 I 12997 C 0
s panPan2.chrUn_NW_014024190v1    103094 86 -    177848 atatatatatatatataGTAGGggccggatggggtggctcatggctgtaatcctagcactttgggaggccgaggctggtggatcag
i panPan2.chrUn_NW_014024190v1 I 4 C 0
s gorGor5.CYUI01015925v1          265786 84 +    417917 atatatatatatatatTGCAGGggccaggtggggtggctcatggctataatcccagcactt--gggagccgaggcaggtggatcac
i gorGor5.CYUI01015925v1       I 2 C 0
s rheMac8.chr6                 143326447 80 + 180051392 ------ATAAATAAATTGCAGGggccaggcgcggtggctcacgcttgtcatcccagcactttgggaggccgaggcaggtggatcac
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          333920 84 +  25972781 --ataaataaataaatTGCAGGggccaggcgcggtggctcacgcttgtcatcccagcactttgggaggccgaggcaggtggatcac
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          233938 83 -   1025902 --ATAAAT-AATAAATTGCAGGGCccgggcgcggtggcttgcgcctgtcatcccagcactttgggaggctgaggcaggtggatcac
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          341957 85 +   1230721 -aataaataaataaatTGCAGGggccaggcgcggtggctcacgcctgttatcccagcactttgggaggctgaggcaggtggatcac
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                268474 67 +  11138919 ------ATACCTCTGCTTCAGAGGCTGGAAAGGGT------------CCACCCCAG-ACTTGGGAAGGCAGAAGATGAGGGAGCAG
i otoGar3.GL873584             C 0 I 65
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I

a score=125388.000000
s hg38.chrX_KI270880v1_alt        190650 61 +    284869 gaggtcaggagttcaagaccagcctggcc---aagatggtg-aaaccctg-tctctact--aaaaata
s panTro5.chrX                    365443 61 + 155549662 gaggtcaggagttcaagaccagcctggcc---aagatggtg-aaaccctg-tctctact--aaaaata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103180 61 -    177848 gaggtcaggagttcaagaccagcctggcc---aagatggtg-aaaccctg-tctctact--aaaaata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265870 67 +    417917 gaggtcaggagttcaagaccagcctgaaccgaagaatggtgaaaaccctg-tctctactaaaaaaata
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143326527 61 + 180051392 aaagtcaggagttcaagaccagcctggcc---acgatggtg-aaatccca-tctctact--aaaaata
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          334004 61 +  25972781 aaagtcaggagttcaagaccagcctggcc---acgatggtg-aaatccca-tctctact--aaaaata
i macNem1.NW_012017243v1       C 0 I 4034
s cerAty1.NW_012001098v1          234021 62 -   1025902 aaagtcaggagttcaaggacagcctggcc---acgacggtg-aaatcccattctctact--aaaaata
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          342042 60 +   1230721 gaagtcaggagttcaagaccagcctggcc---acgatggtg-aaatccca-tctctatt---aaaata
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e otoGar3.GL873584                268541 65 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I

a score=125096.000000
s hg38.chrX_KI270880v1_alt        190711 93 +    284869 ccaaaaaatt-aaccaggcgtggtggcaggcatctgtaatcccagcta-ctcgggaggctgagg-gagaggattgtttgaacctgggaggtggagg
s panTro5.chrX                    365504 88 + 155549662 ccagaaaatt-aaccaggcg-----gcaggcatctgtaatcccagcta-ctcgggaggctgagg-gagaggattgcttgaacctgggaggtggagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103241 93 -    177848 ccaaaaaatt-aaccaggcgtggtggcaggcatctgtaatcccagcta-ctcgggaggctgagg-gagaggattgcttgaacctgggaggtggagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          265937 91 +    417917 ccaaaaaattgaaccaggcgt-gtggcaggcatctgtaatcccagcta-ctcgggaggctgaga-gagaggattgcttgaatctgg--ggcggagg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143326588 94 + 180051392 taaaaaaatg-agccgggcgtggtggcgggcacctgtcgtcccagcta-ctcgggaggctggggcaggagaacggcgtgaacccgggaggtggagg
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          234083 96 -   1025902 taaaaaaatgaagccgggcgtggtggcgagcacctgtcgtcccagctgcctcgggaggctgagcagagagaatggcgtgaacccgggaggcggagg
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1          342102 94 +   1230721 taaaaaaatg-agccgggcatggtggcgggcacctgtcgtgccagcta-ctcgggaggctgaggcaggagaatggcttgaacccgggaggcggagg
i colAng1.NW_012115411v1       C 0 I 1953
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e otoGar3.GL873584                268541 65 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=82678.000000
s hg38.chrX_KI270880v1_alt        190804 70 +    284869 ttgcagtgagccgagatcacgccattgcactccagcctgggtgacaga-gcga-gactctgtctcaaaaaaa
s panTro5.chrX                    365592 70 + 155549662 ttgcagtgagccgagatcgcgccattgcactccagcctgggtgacaga-gcga-gactctgtctcaaaaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103334 70 -    177848 ttgcagtgagccgagatcgcgccattgcactccagcctgggtgacaga-gcga-gactctgtctcaaaaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266028 70 +    417917 gtgcagtga-ccgagatcacgccactgcactccagcctgggtgacagaggcga-gactctgtctcaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chr6                 143326682 70 + 180051392 ttgcggcgagccgagatcgcgccactgcactccagcctgggcgacaga-gcga-gactccgtctccaaaaaa
i rheMac8.chr6                 C 0 I 2945
s cerAty1.NW_012001098v1          234179 70 -   1025902 ttgt-gtgagccgagatcgcgccactgcactccagcctgggagacaga-gcgaggactccgtctcaaaaaaa
i cerAty1.NW_012001098v1       C 0 I 3323
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e otoGar3.GL873584                268541 65 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=17551.000000
s hg38.chrX_KI270880v1_alt        190874 43 +    284869 g-------------aaaaaaaaaaaaGC-AACAG-CTACGGAGGCTAAAAGGTCCCCT
s panTro5.chrX                    365662 43 + 155549662 g-------------aaaaaaaaaaaaGC-AACAG-CTACGGAGGCTAAAAGGTCCCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103404 42 -    177848 g--------------aaaaaaaaaaaGC-AACAG-CTACGGAGGCTAAAAGGTCCCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266098 58 +    417917 aagaaaaaaaaaaaaaaaaaaaaaaaGCAAACAGACTACAGAGGCTAAAAGGTCCCCT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837  0 +    465904 C
e otoGar3.GL873584                268541 65 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=75827.000000
s hg38.chrX_KI270880v1_alt        190917 133 +    284869 CCTTCTGTGTTTAACTGGGAATGTCGGCAACCTTTACA-CATGATTTGTTTTCTCTGAGGTTGATTAGGAAATGGAAGCCACCTCATCCATGGAACTTACTCCAAAACTCT---AATACTCAACATA-GGAAGAGCTT
s panTro5.chrX                    365705 133 + 155549662 CCTTCTGTGTTTAACTGGGAATGTCAGCAACCTTTACA-CATGATTTGTTTTCTGTGAGGTTGATCAGGAAATGGAAGCCACCTCATCCATGGAACTTACTGCAAAACTCT---AATACTCAACATA-GGAAGAGCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103446 133 -    177848 CCTTCTGTGTTTAACTGGGAATGTCAGCAACCTTTACA-CATGATTTGTTTTCTGTGAGGTTGATCAGGAAATGGAAGCCACCTCATCCATGGAACTTACTGCAAAACTCT---AATACTCAACATA-GGAAGACCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266156 137 +    417917 CCTTCTGTGTTTGACTGGGAATGTCAGCAACCTTTACACCATGATTTGTTTTCT-TGAGGTTGATCAGGAAATGGAAGCCACCTCATCCATGGAACTTACTCCAAAACTCTAAAAATACTCAACACATGGAAGAGCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                268606 129 +  11138919 CCTGCCAGGTTGAAC-GGGAATATTAGGAGCTGTGTAG-CAAGATCCTTTTTGTTTAAAA--GCTCTGGAAATGAAAACAAATGTG-CCACAAAAGTTACCCCAAATCTAC---AATTTGTAACGTA-GGAAGAGCTT
i otoGar3.GL873584             I 65 I 26
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837   0 +    465904 C
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=146786.000000
s hg38.chrX_KI270880v1_alt        191050 309 +    284869 GGAGCCGATGGTCTGTT--GGGAACTAGGTCATTACTCCCCTTGTTTTCTCTAACCTTA--TCCAATTTTCCCGGTTATTCCAAGCTCAGAGAAGGAGGGACCTTCGGAAATGATGCTA-CAACTGAGTGACTTCCCTCTAGTCATAG-AAAACTGttgtttttgttttttggg--tttttttgcaagacacggt-ctcactc-cgctg-cccacgctggagcacagtggtgcaatcatggctcgttggaacttc-gaactcctgggctcaagtgatcctcccacctcagcctccagagtagctgggaccacaggtgtgca
s panTro5.chrX                    365838 309 + 155549662 GGAGCCGATGGTCTGTT--GGGAACTAGGTCATTACTCCCCTTGTTTCCTCTAACCTTA--TCCAATTTTCCCGGTTATTCCAAGCTCAGAGAAGGAGGGACCTTCGGAAATGATGCTA-CAACTTAGTGACTTCCCTCTAGTCATAG-AAAACTGttgtttttgttttttggg--tttttttgcaagacacggt-ctcactc-cgctg-cccaggctggagcacagtggtgcaatcatggctcatttgaacctc-gaactcctgggctcaagtgatcctcccacctcagcctccagagtagctgggactacaggtgcgca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103579 309 -    177848 GGAGCCGATGGTCTGTT--GGGAACTAGGTCATTACTCCCCTTGTTTCCTCTAACCTTA--TCCAATTTTCCCGGTTATTCCAAGCTCAGAGAAGGAGGGACCTTCGGAAATGATGCTA-CAACTTAGTGACTTCCCTCTAGTCATAG-AAAACTGttgtttttgttttttggg--tttttttgcaagacacggt-ctcactc-cgctg-cccaggctggagcacagtggtgcaatcatggctcattggaacctc-gaactcctgggctcaagtgatcctcccacctcagcctccagagtagctgggactacaggtgcgca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266293 317 +    417917 GGAGCCGATGGTCTGTTGGGGGAACTGGG-CATTACTCCCCTTG-TTCCTCGAACCTTATTTCCAATTTTCCTGGTTGTTCCAAGCTCAGCAAAGGAAGGACCTGCGGAAATGATGCTACCAACTTAGGGACTTCCCTCCAGTCCTAGAAAAACTGttgtttttgttttttgggtttttttttgcaagacacggtcctcactctcgctgccccaggctggagcacagtgttgcaatcatggctcataggaacttcaaaactcctgggctcgagagatcctcccacctcagcccc--aggtagctgggactacaggtgtgca
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253837   0 +    465904 C
e otoGar3.GL873584                268735  26 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=76375.000000
s hg38.chrX_KI270880v1_alt        191359 135 +    284869 ccacc--atgcctggcaatttttttgttttatt-tatttattttttttagagac--agtcttgccttgttgctgaagctggttttgaactcctgacctcaagtgatctgcctgcctcagcctccc------aaagtgttgggatga
s panTro5.chrX                    366147 136 + 155549662 ccacc--atgcctcgcaatttttttgttttaatattttttttttttttagagac--agtcttgccttgtcactgaagctggttttgaactcctgggctcaagtgatctgcctgcctcagcctccc------aaagtgttgggatta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    103888 134 -    177848 ccacc--atgcctcgcaatttttttgttttaa--tattttttttttttagagac--agtcttgccttgtcactgaagctggttttgaactcctgggctcaagtgatctgcctgcctcagcctccc------aaagtgttgggatta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266610 136 +    417917 ccaccatatgcctggcaa-ttttttgttttaat-ttttattttttttaagagac--agtcttgccttgttgctgaagctggttttgaactcctgggctcaagtgatctgcctgcctcagcctccc------aaagtgttaggatta
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                253837 130 +    465904 ccacc--acgcccggctaatttttggt------------atttttagtagagatggggtttcaccgtgttggccaggctggtcttgaacccctgacctc--gtgatctgcctgcctcactcttcTCTTTAGCttgtgttggctcga
i saiBol1.JH378345             C 0 I 97
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e otoGar3.GL873584                268735  26 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=50149.000000
s hg38.chrX_KI270880v1_alt        191494 97 +    284869 caggcatgagccaccacTCGGGCTATAAAACCAATTTTGAAAAGAGGTGTTGTGTGAACAACCAGCAGTTGAATTACC-TGCCAAAGACAACCTTTTG
s panTro5.chrX                    366283 97 + 155549662 caggcatgaaccaccacTCGGGCTATAAAACCAATTTTGAAAAGAGGAGTTGTGTGAACAACCAGCGGTTGAATTACC-TGCCAAAGACAACCTTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    104022 97 -    177848 caggcatgaaccaccacTCGGGCTATAAAACCAATTTTGAAAAGAGGAGTTGTGTGAACAACCAGCGGTTGAATTACC-TGCCAAAGACAACCTTTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266746 97 +    417917 caggcatgagccaccacTCGGACTATAAAACCAATTTTGAAAAGAGGGGTTGTGTGAACAACCAGCAGTTGAATTACCTTGCCAAAGACAACC-TTTG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253967 97 +    465904 I
e otoGar3.GL873584                268735 26 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=13803.000000
s hg38.chrX_KI270880v1_alt        191591 28 +    284869 CTTCTCTTT-ACCTAGGGGTGGCCCTGGG
s panTro5.chrX                    366380 28 + 155549662 CTTCTCTTT-ACCTGGGGGTGGCCCTGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    104119 28 -    177848 CTTCTCTTT-ACCTAGGGGTGGCCCTGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266843 28 +    417917 CTTCTCTTTAACCTAGGGGTGGCCCT-GG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                268761 22 +  11138919 CTCCCCTTT-AGCTGGGAGGGGG------
i otoGar3.GL873584             I 26 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                253967 97 +    465904 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=144554.000000
s hg38.chrX_KI270880v1_alt        191619 184 +    284869 GTCCAATCTCAGCCAATGGAACGGAAGGT--AAATATACAAGAGGAGGTGTGGCTAGCACGGCCCCTCCACCTCTACTCCGCTCCTGTCTCTGAGTGTGGC--TGTGATGCCCGGATCAGCAGCAGCCT-CCTTGCAACCTT----GAGGCCACGTGGTGG---TGAACAGAAAGG---ACCTCGGTTACTT----GTGGTGT
s panTro5.chrX                    366408 184 + 155549662 GTCCAATCTCAGCCAACGGAACGGAAGGT--AAATATACAAGAGGAGGTGTGGCTAGCACGGCCCCTCCACCTCTACTCCGCTCCTGTCTCtgagtgtggc--tgtgatgcccggatcagcagcagcct-ccttgcaacctt----gaggCCACGTGGTGG---TGAACAGAAAGG---ACCTCAGTTACTT----GTGGTGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    104147 184 -    177848 GTCCAATCTCAGCCAATGGAACGGAAGGT--AAATATACAAGAGGAGGTGTGGCTAGCACGGCCCCTCCACCTCTACTCCGCTCCTGTCTCTGAGTGTGGC--TGTGATGCCCGGATCAGCAGCAGCCT-CCTTGCAACCTT----GAGGCCACGTGGTGG---TGAACAGAAAGG---ACCTCAGTTACTT----GTGGTGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          266871 199 +    417917 GTCCAATCTCAG-CAATGGAACGGAAGGTAAAAATATACAAGAGGA-GTGTGGCTAGCACTGCCCCTCCACCTCTACGC--CTCCTGTCTCTGAGTGTGGCTGTGTGATTGCCCGATCAGCAGCAGCCTCCCTTGCAAACCTTGGAGGGGCCACGTGGTGGCGTTGAACAGAAAAGGACACCTCGGTTACCTTGTGGTGGTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345                254064 184 +    465904 atCCAGTTTCAGAAAGTGGGATAGAAGGA--AAATATACAAGAGGAGGCGTGGCCACGACTCTCCCTTCCCCTGGACTGTTTTCCTGTCTCTGAATGTGGT--CGCGATGTCCGGATCAGCAGCAGCCA-CCTGGCGAACTT----GAGGCAACATGGTGG---TGGACAGAAACG---ACGTGGCTTGCTT----CTGGGGT
i saiBol1.JH378345             I 97 I 489
s otoGar3.GL873584                268783 181 +  11138919 GTACAATTTCAGCAGATGGGGCAGAGGG---AAATGTGCAGGGGGACAGGTGGCTAGGACTG-CCCTGTGCACCTGCTCATGTCCTGTCTCTGAAGGTGGC--GGTGATG-CCGGGTCAACGGCAGCCA-CCCTGGCACCTT----GCAGCGACAGGGCA----TGAGCTCAAAGGG--GCCTGGGTTATGT----AAAGTGT
i otoGar3.GL873584             C 0 I 1
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=129243.000000
s hg38.chrX_KI270880v1_alt        191803 218 +    284869 AACTTGAGGCTGCCGTCT---------------------------------------------TGTGAGTCAGGTGC---CTCGTGTTTTATTTTTTACAAGAGTTGTGTTTCTTTCCAAAGATGATTTTGGATTagagagaaagagagagagagagaga------------cagTAGCGTGTCTGGGTCAGATTTTTACAAAATATCACTACTTAAGATACCAACGTAGAAATGAGCCAGCGTCCAAGTCCTGTTCATATATTTT-------GGCCAACTTTCT
s panTro5.chrX                    366592 274 + 155549662 AACTTGAGGCTGCCATCTG-CAGACTTGAATATGAGCACGGTACTTCCTTTCCCTGCAAGACCTGTGAGTCAGGTGC---CTCGTGTTTTATTTTTTACAAGAGTTGTGTTTCTTTCCAAAGATGATTTTGGATTagagagaaagagagagagagagagagagagagagagaCAGTAGCGTGTCTCGGTCAGATTTTTACAAAATATCACTACTGAAGATATCAACGTAGAGATGAGCAAGCGTCCAAGTCCTGTTCATATATTTT-------GGCCAACTTTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    104331 268 -    177848 AACTTGAGGCTGCCGTCTG-CAGACTTGAATATGAGCACGGTACTTCCTTTCCCTGCAAGACCTGTGAGTCAGGTGC---CTTGTGTTTTATTTTTTACAAGAGTTGTGTTTCTTTCCAAAGATGATTTTGGATTagagagaaagagagagagagagaga------gagagaCAGTAGCGTGTCTTGGTCAGATTTTTACAAAATATCACTACTGAAGATATCAACGTAGAGATGAGCAAGTGTCCAAGTCCTGTTCATATATTTT-------GGCCAACTTTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          267070 270 +    417917 AACTTGAGGCTGCCGTCTGCCAGACTTGAATATGAGCACATTACTTCCTTTCCCTACAAGACCTGTGAGTCAGGTGC---CTTGTGTTTTATTTTTTACAAGAGTTGTGTTTCTTTCCAAAGATGATTTTGGATTagagagaaagagagaaagagagaga----gagagagacagTAGCGTGTCTGGGTCAGATTTTTACAAAA-ATCACTACTTAAGATACCAACGTAGAGATGAGCAAGTGTCCAAGTCCTGTTCATATATTTT-------GGCCAACTTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584                268965 216 +  11138919 -------AACTCCTGTGTG-----------------------AGGCCCTGCTCCCATAAGACCTGTGGGTCCAATGTGTGCTGCTGTTTTA-TTTAAACAAAATTGTTGTGTCTTTCTAAAGACAGTTTCCAATTAAA--------------------------------------AGCGTGTATGAAGTCATGTTTTATAAAACCTTACATTTAAAATAACCAGCGTAGGGGTGGACAAGTGTCCAGACTATGTGAGTGTCTTTTTCTTTTAAGACAACTTTTT
i otoGar3.GL873584             I 1 I 2513
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=502139.000000
s hg38.chrX_KI270880v1_alt        192021 1034 +    284869 TTTTTTCAGTTTTTGTTTGTGTGtttgttttattttactttaagttctggggtatgtgtgcagaacgggcaggtttgttacatacgtatacacatgccatggtggttttctgcacccatcaacccatcatctacattaggtatttttcctaatgctctccctcccctatccccccaccccctgacaggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgacaacatgcggtg-tttggttttctgtttctgtgttagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcctcctttttgatggctgcatagtattccatggtgtctctgtgccacgttttctttctccagtctattattgatgggcatttgggttggttccaaatctttgctgttgtgaatagtgccgcaataaacatacgtgtgcatgtgtcttt-atagcaggatgatttataatcctttgggtatatacccagtgatgggatggctgggtcaaatggtatttctggttctagatccctgaggaatcgccacactgtcttccataat-ggttgaactagtttacagtcccacc---aacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgac-tttttaatgatcgccc-ttctaactggtgtgaggtggtatctcattgtggttttg-atttgcatttctctgatg-accagtgatgatgagcttttttttcacatgtttgtttggccAACTTTTTGATATGTTTAGATATTAGGACCAAGATATCttcttcttcttattattatttgagatggagtctcgctctgttgcccaggctggagttt-aatggcacaatctcagctcactgcaacctccgcctcctgggttgaagcaattctcctgcctcagcccaccgagtagctgggattacaggca-tgcaccaccacacccggctaattttgtatttttagtagagat
s panTro5.chrX                    366866 1025 + 155549662 TTTTTTCAGTTTTTGTTTGTGTGtttgttttattatactttaagttctggggtacgtgtgcagaacgtgcaggtttgttacgtaggtatacacgtgccatggtggtttgctgcacccatcaacccgtcatctacattaggtatttgtcctaatgctctccctcccctatccccccaccccccaacaggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgcggtg-tttggttttctgtttctgtgttagtttgctgagaatgatggtttccagcttcatccatgtccccatgaaggacatgaactcatcctttttcatggctgcatagtattccatggtgtctatgtgccacattttctttctccagtctattattgatggacatttgggttggttccaaatctttgctgttgtgaatagtgccgcaataaacatacgtgtgcatgtgtcttt-acagtagaatgatttatactcctttgggtatatacccagtgatgggattgctgggtcaaatggtatttctggttctagatccttgaggaattgccacactctcttccacaat-ggttgaactagtttgtactc--------aacagtgtaaaagcgttcctgtatctccagagcctcgccagcatctgttgtttcctgac-tttttaatgattgcca-ttctaactggtgtgagatggtatctcactgtggttttg-atttgcatttctctgatg-accagtgatgatgagcttttttttcacatgtttg----GCCAACTTTTTGATATGTTTAGATAGTAGGACCAAGGTAtcttctttttattattattatttgagatggagtctcgctctgttgcccaggctggagttt-aatggcacaatctcagctcactgcaacctccgcctcctgggttgaagcaattctcctgcctcagcccaccgagtagctgggattacaggca-tgcaccaccacacccggctaattttgtatttttagtagagat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    104599 1025 -    177848 TTTTTTCAGTTTTTGTTTGTGTGtttgttttattatactttaagttctggggtacgtgtgcagaacgtgcaggtttgttacataggtatacacgtgccatggtggtttgctgcacccatcgacccgtcatctacattaggtatttgtcctaatgctctccctcccctatccccccaccccccaacaggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgcagtg-tttggttttctgtttctgtgttagtttgctgagaatgatggtttccagcttcatccatgtccccatgaaggacatgaactcatcctttttcatggctgcatagtattccatggtgtctatgtgccacattttctttctccagtctattattgatggacatttgggttggttccaagtctttgctgttgtgaatagtgccgcaataaacatacgtgtgcatgtgtcttt-atagtagaatgatttatactcctttgggtatatacccagtgatgggatggctgggtgaaatggtatttctggttctagatccttgaggaattgccacactctcttccacaat-ggttgaactagtttgtactc--------aacagtgtaaaagcgttcctgtatctccagagcctcgccagcatctgttgtttcctgac-tttttaatgattgccc-ttctaactggcgtgagatggtatctcactgtggttttg-atttgcatttctctgatg-accagtgatgatgagcttttttttcacatgtttg----GCCAACTTTTTGATATGTTTAGATAGTAGGACCAAGGTATCttctttttattattattatttgagatggagtctcgctctgttgcccaggctggagttt-aatggcacaatctcagctcactgcaacctccgcctcctgggttgaagcaattctcctgcctcagcccaccgagtagttgggattacaggca-tgggccaccacacccggctaattttgtatttttagtagagat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          267340 1031 +    417917 TTTTTTCAGTTTTTGTTTGTGTGtttgttttattttactttaagtcctggggtacgtgtgcagaatgtgcaggtttgttacataggtatacacgtgccatagtggtttgctgcacccatcaacccatcatctacattaggtatttgtcctaatgctgtccctcc-----ctccccaacccccgacaggctccagtgtgtgatgttcccctccctgt-tccatgtgttctcattgttcgactcccacttatgagtgacaacatgcgatgttttggttttctgtttctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcctcc-ttttgacggctgcatagtattccatggtgtctatgtgccacattttctttctccagtctattattgatggacatttggg-tggttccaaatctttgctgttgtgaatagtgccacaataaacatacgtgtgcatgtgtctttaatagcaccatga-ttatagt-ctttgggtatatacccagtaa-aggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatgggttgaactagtttacagtcccaccacaaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcctgacttttttaatgatcgccctttctaactggcatgagatgtatcctcattgtggttttgaatttgcatttctctaatgcaccagtgatgatgagc--atttttcacatgtttgtttggccAACTTTTTGATATGTTTCAATATTAGGACCAAGATATCttcttcttattattattatttgagatggagtctcgctctgtcacccaggctggagtgcaaatggcacaatctcagcttactgcaacctctgcctcctgggttgaagcgattctcctgcctcagcccaccgagtagctgggattacaggcgttgcaccaccacacccggctaattt--gatttttagtagagat
i gorGor5.CYUI01015925v1       C 0 I 4923
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                254248  489 +    465904 I
e otoGar3.GL873584                269181 2513 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962  215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I

a score=3657.000000
s hg38.chrX_KI270880v1_alt        193055 13 +    284869 agtgttttaccat
s panTro5.chrX                    367891 13 + 155549662 agtgttttaccat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    105624 13 -    177848 agtgttttaccat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                269181 2513 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=48336.000000
s hg38.chrX_KI270880v1_alt        193068 142 +    284869 gACCCTTTTCTTTCCATCAACAGCATTCTCCCTTCTCAAAGTGTATTCTTTTCTAATTCTATAATTAACGTATTTTATTTATG------CAAAAAAAA-GAATAAAAAGGA----GACACTGGACATAATCAGACAGAATAACCTCAGCCTCC
s panTro5.chrX                    367904 147 + 155549662 gACCCTTTTCTTTCCATCAACAGCATTCTTCCTTCTCAAAGTGGATTCTTTTCTAATTCTATAATTAACACATTTTATTTATG------CAAAAAAAAAGAATAAAAAGGAAAGAGACACTGGACATAATCAGACAGAATAACCTCAGTCGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    105637 147 -    177848 gACCCTTTTCTTTCCATCAACAGCATTCTTCCTTCTCAAAGTGGATTCTTTTCTAATTCTATAATTAACACATTTTATTTATG------CAAAAAAAAAGAATAAAAAGGAAAGAGACACTGGACATAATCAGACAGAATAACCTCAGTCGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584                271694 142 +  11138919 GAACTTTTCCTCACCATCGGCAGCGTTATCTCTTCTCAAAAGGAATTATTTTCTTTTCCTGTAGTGCACGTATTTCACTTGTGTCCTCCCCAAAGAGCAAAATGAAA-----------ACTAGAGATAAACACACAACATACACCCCCCCCCC
i otoGar3.GL873584             I 2513 I 4890
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=117425.000000
s hg38.chrX_KI270880v1_alt        193210 448 +    284869 TCTTTCAAAGATAAACAGTGTCCCATGTATGTGCTTGCTCttttttttttttttttttttttttgagatggaatctcgctctgtcgcccaggctggagtgcagtggcgtgacaaggctcactgcaagctccacctcccgggttcacgcctttctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcccggctaattttttttgtatttttagtagagacggggtttcaccgtgttagccagtatagtctccatctcttgacctcgtgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggcaaaggggtataaatctttttcaagtctaaataatccacttgcctgtctcataacccaggaacgtttccccaaggacctgggagccacctcttttcaaatgaga
s panTro5.chrX                    368051 435 + 155549662 TCTTTCAAAGATAAACAGTGTCCCATGTATGTGCTTGCtcttttttttttg-------------gagatggaatctcgctctgtcacccaggctggagtgcagtggcgtgacgaggctcactgcaagctccacctcccgggttcacgcctttctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcccggctaagttttttgatttttttagtagagacggggtttcaccgtgttagccagtatagtctccatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggatgacagacgtgagccactgcgcccggcaaaggggtataaatctttttcaagtctaaataatctgcttgcctgtctcataacccaggaacgtttccccaaggacctgggagccacctcttttgaaatgaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    105784 434 -    177848 TCTTTCAAAGATAAACAGTGTCCCATGTATGTGCTTGCTCttttttttttg-------------gagatggaatctcgctctgtcacccaggctggagtgcagtggcgtgacgaggctcactgcaagctccacctcccgggttcacgcctttctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccggctaag-tttttggtttttttagtagagacggggtttcaccgtgttagccagtatagtctccatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggatgacagacgtgagccactgcgcccggcaaaggggtataaatctttttcaagtctaaataatctgcttgcctgtctcataacccaggaacgtttccccaaggacctgggagccacctcttttgaaatgaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          193633 3874 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e cerAty1.NW_012001098v1          234249 3323 -   1025902 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e rheMac8.chr6                 143326752 2945 + 180051392 I
e macNem1.NW_012017243v1          334065 4034 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=85491.000000
s hg38.chrX_KI270880v1_alt        193658 49 +    284869 tcatgaaggaggaaaacgcccctagctccagtgtctgcggacgagaagg
s panTro5.chrX                    368486 49 + 155549662 tcatgaaggaggaaaacgcccctagctccagtgtctggggacgagaagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    106218 49 -    177848 tcatgaaggaggaaaacgcccctagctccagtgtctggggacgagaagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143329697 49 + 180051392 TCATGAAGGAGGAAGATGCCCGTAGCCCCAGCGTCTGGGGACGAGGAGG
i rheMac8.chr6                 I 2945 C 0
s macNem1.NW_012017243v1          338099 49 +  25972781 tCATGAAGGAGGAAGATGCCCGTAGCCCCAGTGTCTGGGGACGAAGAGG
i macNem1.NW_012017243v1       I 4034 C 0
s cerAty1.NW_012001098v1          237572 49 -   1025902 TCATGAAGGAGGAAGATGCCCGTAGCCCCAGTGTCTGGGGACGAGGAGG
i cerAty1.NW_012001098v1       I 3323 C 0
s manLeu1.NW_012108508v1          197507 49 -    350446 TCATGAAGGAGGAAGATGCCCGTAGCCCCCGTGTCTGGGGATGAGGAGG
i manLeu1.NW_012108508v1       I 3874 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e colAng1.NW_012115411v1          342196 1953 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=1968875.000000
s hg38.chrX_KI270880v1_alt        193707 874 +    284869 gtctaagttgtcacctgactcgagattgcaaaaGCCAGCTAAGgcaatgggctgtacacacttacatctagcgaagggtgagattgcttcgtgtcattacaacctctttagtgaattgcttgtgataggcttggcattctggtttgatgctggttccacaataaaatcattttcttttctcttttaccttcgtggtgaggtccccggggttggcagattttgcttttaatgatatttcttcaacGCTGTCTCCACCAAGACCTTCAAATCCTTCCGGAGGCAGAGGGCCCTTGAGGATTCTCGGAGGCTTGAACGGAAATTCTCTACAAAGACCTTGCAAAGCCCTACCCAAGGCGGAGAAGATG--------AAATATCTGTTAATATGATTGTCATGACAATGTTTTCAGAGATTCCTTCCTTTTGGCAGGATATTTACAGTATCTCAGTGTTCAGATTCCAACGAACGCTGTTTCTATCTGTGTCTTAATAAGCCCAGTTGCGCAGAAGGACGTGGCACCCAGAGAGAGCTTGATAAACGTTGGGTTTTTTGACCGTCCTTGGCATTTGATCTTTGACAGGCAAGCGGGCGTGCAGGTAGGTGGTGTCCACGGGGCGGCCAGCTCAGCAGTGATGCTTGTCCCGTGCTCAgctgtggcctgaat-gtctgtgttacccaaattcctgtgttgaaattgtctccccatccttagttcaaccattgtggaagacagtgtggtgattcctcaaggatctacaaccagaaatatcatttgacccagcaatttcattactgggtatatacccaaaggattgtaaatcattctcctataaagacacatgtgcacgtatgttt-ttgcggcactgttcacaatagcaa
s panTro5.chrX                    368535 875 + 155549662 gtgtaagttgtcacctgactcgagattgcaaaaGCCAGCTAAGgcaatgggctgtacacacttacctctagcgaagggtgagattgcttcatgccattgcaacctgtttagtgaattgcttgtgatagccttggcattctggtttgatgttggttgcataataaaatcattctcttttctcttttacctccgtggcgaggtccccggggttggcagattttgcttttaatgatatttcttcaacGCCGTCTCCACCAAGACCTTCAAATGCTTCCAGAGGCAGAGGGCCCTTGAGGTTTCTCGGAGGCTTGAACGGAAATTCTCTACAAAGACCTTGCAAAGCCCTACCCAAGGCAGGGAAGATG--------AAATATCTGTTAATATGATTGTCATGACAATGTTTTCAGAGATTCCTTCCTTTTGGCAGGATATTTACAGTATCTCAGTGTTCAGATTCCAACGAACGCTGTTTCTATCTGTGTCTTAATAAGCCCAGTTGCGCAGAAGGACGTGGCACCCAGAGAGTGCTTGGTAAACGTTGGGTTTTTTGACCGTCCTTGGCATTTGATCTTTGACAGGCAAGCGGGTGTGCAGATAGGTGGTGTCCACGGGGCGGCCAGCTCAGCAGTGATGCTTGTCCAGTGCTCAgctgtggcctgaat-gtctgtgttacccaaattcctgtgttgaaattgtctccccatccttagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagaaccagaaatatcatttgacccagcaatttcattactgggtatatacccaaaggattataaatcattctactatgaagacacatgcgcacgtatgtttattgtgccactgttcacaatagcaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    106267 875 -    177848 gtgtaagttgtcacctgactcgagattgcaaaaGCCAGCTAAGgcaatgggctgtacacacttacctctagcgaagggggagattgcttcgtgccattgcaacctctttagtgaattgcttgtgatagccttggcattctggtttgatgttggttgcataataaaatcattctcttttctcttttacctccgtggcgaggtccccggggttggcagattttgcttttaatgatatttcttcaacGCCGTCTCCACCAAGACCTTCAAATGCTTCCAGAGGCAGAGGGCCCTTGAGGTTTCTCGGAGGCTTGAACGGGAATTCTCTACAAAGACCTTGCAAAGCCCTACCCAAGGCAGGGAAGATG--------AAATATCTGTTAATATGATTGTCATGACAATGTTTTCAGAGATTCCTTCCTTTTGGCAGGATATTTACAGTATCTCAGTGTTCAGATTCCAATGAACGCTGTTTCTATCTGTGTCTTAATAAGCCCAGTTGCGCAGAAGGACGTGGCACCCAGAGAGTGCTTGGTAAACGTTGGGTTTTTTGACCGTCCTTGGCATTTGATCTTTGACAGGCAAGCGGGTGTGCAGATAGGTGGTGTCCACGGGGCGGCCAGCTCAGCAGTCATGCTTGTCCAGTGCTCAgctgtggcctgaat-gtctgtgttacccaaattcctgtgttgaaattgtctccccatccttagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagaaccagaaatatcatttgacccagcaatttcattactgggtatatacccaaaggattataaatcattctactatgaagacacatgcgcacgtatgtttattgctgcactgttcacaatagcaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143329746 873 + 180051392 GTCTAACTTGTCACCCGACTTGAGATTGCAAAACCCAGCTAAGTCaatggattgtacacacttcgctctacggaaggctgagatttctttgtgtcgttgccacctctttagtgtcttgcctgtgacgggctttgcattctggtttgatgctggttcgataatgaaatcattttgttgtctcttttacctttgtggcgaggtcctcagggtcggcagattttgcttttaatgatatttcttcaacGCTGTCTCCACCAAGACCTTCGAATCCTTCCAGAGGCAGAGGA----------TTCTTGAAGGCTTCAACGGCAATTCTCTACGAAGACCTCGCAAAGCCCTACCCAAGGCAGGGAAGATGAAAAGATGAAACATCTGTTAATATAACCGTTGTGAGAATGTTTTCAGAGATTCCTTCCTTCTGGCAGGGTATTTACGGTATCTCCGTGTTCAGATTCCAACAAACGCGGTTTCTATCCGTGTCTTCATCAGGCCAGGTGTGCAGAAGGACGTGGTTCCCACAGAGAGCTTGATAAACGTTGGGTTTTTTGACC-TCCTTGGCATTTGATCTTTGACAGGTAAGCGGGTATGCAGATAGGTGGTGTCCACAGGGCAGCCCGCTCAGCAGTGATGCTTGTCCAATGCTCAGCTGTGGCCTAAGCAGTCTGTGTTCACCAAATTCCTGTGTTGAAATTGTCTCCCCGTCCttagttcaacccccatggaagacagtgtggcgattcctcaaggacctagaaccagaaataccatttgacccagcaatttcattactgagtatatacccaaaggattataaattgttctactgtaaagacacatgcacacgtatgtttattgtgggactggtcacaatagcaa
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          338148 873 +  25972781 GTCTAACTTGTCACCCGACTCGAGATTGCAAAACCCAGCTAAGTCaatggattgtacacacttcgctctacggaaggctgagatttctttgtgtcgttgccacctctttagtgtcttgcctgtgacgggctttgcattctggtttgatgctggttcgataatgaaatcattttcttgtttcttttacctttgtggcgaggtcctcagggtcggcagattttgcttttaatgatatttcttcaacGCTGTCTCCACCAAGACCTTCGAATCCTTCCAGAGGCAGAGGA----------TTCTTGAAGGCTTCAACGGGAATTCTCTACGAAGACCTCGCAAAGCCCTACCCAAGGCAGGGAAGATGAAAAGATGAAACATCTGTTAATATAACCGTTGTGAGAATGTTTTCAGAGATTCCTTCCTTCTGGCAGGGTATTTACGGTATCTCCGTGTTCAGATTCCAACAAACGCGGTTTCTATCCGTGTCTTCATCAGGCCAGGTGTGCAGAAGGACGTGGTTCCCACAGAGAGCTTGATAAACGTTGGGTTTTTTGACC-TCCTTGGCATTTGATCTTTGACAGGTAAGCGGGTATGCAGATAGGTGGTGTCCACAGGGCAGCCCGCTCAGCAGTGATGCTTGTCCAATGCTCAGCTGTGGCCTAAGCAGTCTGTGTTCACCAAATTCCTGTGTTGAAATTGTCTCCCCGTCCttagttcaacccccatggaagacagtgtggcgattcctcaaggacctagaaccagaaataccatttgacccagcaatttcattactgagtatatacccaaaggattataaattgttctactgtaaagacacatgcacacgtatgtttattgtgggactggtcacaatagcaa
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          237621 872 -   1025902 GTCTAATTTGTCACCCGACTCGAGATTGCAAAACCCGGCTAAGTCaatggattgtacacacttcgctctacggaaggctgagatttctttgtgtcgttgccacctctttagtgccttgcctgtgacgggctttgcattctggtttgatgctggttcgataatgaaatcattttcttgtctcttttacctttgtggcgaggtcctcagggtcggcagattttgcttttaatgatatttcttcaacGCTGTCTCCACCAAGACCTTCGAATCCTTCCAGAGGCAGAGGA----------TTCTTGAAGGCTTCAACGGGAATTCTCTACGAAGACCTTGCACAGCCCTACCCAAGGCAGGGAAGATGAAAAGATGAAACATCTGTTAATATAACCGTTGTGAGAATGTTTTCAGAGATTCCTTCCTTCTGGCAGGGTATTTACGGTATCTCCGTGTTCAGATTCCAACAAACACTTTTTCTATCCGTGTCTTCATCAGGCCAGGTGTGCAGAAGGACGTGGTTCCCAGAGAGAGCTTGACAAACATT-GGTTTTTTGACT-TCCTTGGCATTTGATCTTTGACAGGTAAGCGGGTATGCAGATAGGTGGTGTCCACAGGGCAGCCCGCTCAGCAGTGATGCTTGTCCAATGCTCAGCTGTGGCCTAAGCAGTCTGTGTTCACCAAATTCCTGTGTTGAAATTGTCTTCCCGTCCttagttcaacccccgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatttcattactgagtatatacccgaaggattataaattgttttactgtaaagacacacacacacgtatgtttattgtgggactattcacaatagcaa
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1          197556 873 -    350446 GTCTAACTTGTCACCTGACTCGAGATTGCAAAACCCAGCTAAGTCaatggattgtacacacttcgctctacggaaggctgagatttctttgtgtcgttgccacctctttagtgcattgcctgtgatgggctttgcattctggtttgatgctggttcgataatgaaatcattttcttgtctcttttacctttgtggcgaggtcctcagggtcggcagattttgcttttaatgatatttcttcaacGCTGTCTCCACCAAGACCTTCAAATCCTTCTAGAGGCAGAGGA----------TTCTTGAAGGCTTCAACGGGAATTCTCTACGAAGACCTTGCAAAGCCCTACCCAAGGCAGGGAAGATGAAAAGATGAAACATCTGTTAATATAACCGTTGTGAGAATGTTTTCAGAGTTTCCTTCCTTCTGGCAGGGTATTTACGGTATCTCCGTGTTCAGATTCCAACAAACACTTTTTCTGTCCGTGTCTTCATCAGGCCAGGTGTGCAGAAGGACGTGGTTCCCACAGAGAGCTTGATAAACGTTGGGTTTTTTGACC-TCCTTGGCATTTGATCTTTGACAGGTAAGCGGGTATGCAGATAGGTGGTGTCCACAGGGCAGCCCGCTCAGCAGTGATGCTTGTCCAATGCTCAGCTGTGGCCTAAGCAGTCTGTGTTCACCAAATTCCTGTGTTGAAATTGTCTCCCCGTCCCtagttcaaccactgtagaagacggtgtggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatttcattactcagtatatacccgaaggcttataaattgttctactgtaaagacacatgcacacgtatgtttattgtgggactattcacaatagcaa
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          344149 873 +   1230721 GTCTAACTTGTCACCTGACTCGAGATTGCAAAACCCAACTAAGTCaatggattgtacacacttagctctacggaaggctgagatttctttgtgtcgttgcaacctctttagtgccttgcctgagatgggctttgcatcctggtttgatgctggttcgataataaaatcattttcttgtctcttttccctttgtggcgaggtccccagggatggcagactttgcttgtaatgatatttcttcaacGCTATCTCCACCAAGACCTTCAAATCCTTCCAGAGGCAGAGGA----------TTCTTGAAGGTTTCAACGGGAATTCTCTACGAAGACCTTGCAAAGCCCTACCCAAGGCAGGGAAGATGAAAAGATAAAATATCTGTTAATATAACTGTTGTGAGAATGTTTTCAGAGATTCCTTCCGTCTGGCAGGGTGTTTATGGTATCTCCGTGTTCAGATTCCAACAAACACTGTTTCTATCTGTGTCTTCATCAGGCCAGGTGTGCAGAAGGAGGTGGTTCCCACAGAGAGCTTGATAAACGTTGGGTTTTTTGACC-TCCTTGGCATTTGATCTTTGACAGGTAAGCGGGTATGCAGATAGATGGTATCCACAGGGCAGCCAGCTCAGCAGTGATGCCTGTCCAGTGCTCAGCTGTGGCCTGAGCAGTCTGTGTTCCCCAAATTCCTGTGTTGAAATTGTCTCCCCGTCCttagttcaacccccgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatttcgttactgggtatatacccgaaggattataaattattctactataaagacacacgcacacgtatgtttattgtggcactgttcacaatagcaa
i colAng1.NW_012115411v1       I 1953 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        181962 215 -    811265 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=553521.000000
s hg38.chrX_KI270880v1_alt        194581 182 +    284869 agacttggaaccaatccaaatgcgcatcaatgacagactggatgaagaaaatgtggcacatacacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaattcacacaggaacagaaaaccaaacac
s panTro5.chrX                    369410 182 + 155549662 agacttggaaccaacccaaatgcgcatcaatgacagactggataaagaaaatgtggcacatagacaccatggaatactacgcagccatcaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaagtcacacaggaacagaaaaccaaacac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107142 182 -    177848 agacttggaaccaacccaaatgcgcatcaatgacagactggataaagaaaatgtggcacatagacaccatggaatactacgcagccatcaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaagtcacacaggaacagaaaaccaaacac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143330619 182 + 180051392 agacttggaaccaacacaaatgcccatcgatgatagactggataaagaaaatgtggtacatagacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttggagggacatgggtgaagctggaaaccatcattctcagcaaactcacacaaggacagaaaaccaaacac
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          339021 182 +  25972781 agacttggaaccaacacaaatgcccatcgatgacagactggataaagaaaatgtggtacatggataccatggaatactatgcggccatgaaaaaggatgagttcatgtcctttggagggacatgggtgaagctggaaaccatcattctcagcaaactcacacaaggacagaaaaccaaacac
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          238493 182 -   1025902 agacttggaaccaacccaaatgcccatcgatgatagactggatgaagaaaatgtggcacacagacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcggcaaactcacacaggaacaggaaaccaaacac
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        182177 182 -    811265 agacttggaaccaacctaaatgtccatcgatgatagactggataaagaaaatgtggcacatcgataccatggaatactacgcagccacgaaaaaggatgagttcatgtcctttgcagggacatgggtgaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacac
i chlSab2.chrUn_KE147541v1     I 215 C 0
s manLeu1.NW_012108508v1          198429 181 -    350446 agacttggaaccaacccaaatg-ccatcgatgatagactggattaagaaaatgtggtacatcgacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacgtggatgaagctggaaaccatcattctcggcaaactcacacaggaacagaaaaccaaacac
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          345022 180 +   1230721 agacttggaaccaacccaaatgcccttcaatg--agactggataaagaaaatgtggcatatcgataccatggaatactatgcagccatgaaaaaggatgagttcctgtcctttgcagggacatgggtgaagctggaaaccgtcattctcagcaaactcacacaggaacagaaaaccaaacac
i colAng1.NW_012115411v1       C 0 I 1382
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=264631.000000
s hg38.chrX_KI270880v1_alt        194763 118 +    284869 cgcatgttctcacccataagtgggagctgaacaatgagaacacatggacacaggaaggggaacatcacacaccagggcctgtcagggggttgggggaaggtgagggagagcattagga
s panTro5.chrX                    369592 118 + 155549662 cacatgttctcattcataagtggcagttgaatgatgagaacacacggacacagggaggggaacatcacacagcagggcctgtcagggggttgggggaaggggagggagagcattagga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107324 118 -    177848 cacatgttctcattcataagtggcagttgaatgatgagaacacacggacacagggaggggaacatcacacagcagggcctgtcagggggttgggggaaggggagggagagcattagga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143330801 118 + 180051392 cgcatgttctcactcatcagtgggagttgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctgttggggagtgggggctaggggagggagagcattagga
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          339203 118 +  25972781 cacatgttctcactcatcagtgggagttgaacaatgagaacacaaggacacagggaggggaacgtcacacactggggcctgttggggagtgggggctaggggagggagagcattagga
i macNem1.NW_012017243v1       C 0 I 557
s cerAty1.NW_012001098v1          238675 118 -   1025902 cgcatgttctcactcatcagtgggagttgaacaatgagatcactcggacacagggaggggaacgtcacacactggggcctgttggggggtgggggctaggggagggagagcattagga
i cerAty1.NW_012001098v1       C 0 I 490
s chlSab2.chrUn_KE147541v1        182359 117 -    811265 cgcatgttctcactcctaagtggcagttgaacaatgagaacacatggacacagggaggggaacatcacacaccggggcctgttgggggatggggg-taggggagggagagcattagga
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          198610 118 -    350446 cgcatgttctcactcataagtgggagttgaacaatgagaacacacggacacagggaggggaacgtcacacactggggcctgttggggggtgggggctaggggagggagagcattagga
i manLeu1.NW_012108508v1       C 0 I 517
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=3049.000000
s hg38.chrX_KI270880v1_alt        194881 8 +    284869 gaaacacc
s panTro5.chrX                    369710 8 + 155549662 gaaacacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107442 8 -    177848 gaaacacc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143330919 6 + 180051392 --cacata
i rheMac8.chr6                 C 0 I 2
s chlSab2.chrUn_KE147541v1        182476 8 -    811265 gaaatatg
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e macNem1.NW_012017243v1          339321 557 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=5460.000000
s hg38.chrX_KI270880v1_alt        194889 4 +    284869 taat
s panTro5.chrX                    369718 4 + 155549662 taat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107450 4 -    177848 taat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143330927 4 + 180051392 taat
i rheMac8.chr6                 I 2 I 215
s macNem1.NW_012017243v1          339878 4 +  25972781 taat
i macNem1.NW_012017243v1       I 557 C 0
s chlSab2.chrUn_KE147541v1        182484 4 -    811265 taat
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=292196.000000
s hg38.chrX_KI270880v1_alt        194893 299 +    284869 gtagacgacgggttgatgggtgcagaaaaccaccatggcacgtgtatacctatgtaaccaacctgcacgttctgcacatgtaccccagaacttaaagtataataaaaaaaaaaaaaaggaaagaaatcctctctccaaagttgatgatattgggaggtggggtctttgggaggtgaggaggtcatagggttggaggctcatggctgggatgactgcccttataaaagggtcgccgggga---------ggccccttccaccacgtgagggcacagagagaaggcgctgtctatgaagcaggaggcctt
s panTro5.chrX                    369722 297 + 155549662 gtagatgacgggttgaggggtgcagcaaaccaccatggcaggtgtacacctatgtaaccaacctggacgctctgcacatgtatcccagaacttaaagtataat--ggaaaaaaaaaaggaaagaaatcctctctccaaagttgatgatattgggaggtggggtcttcaggaggtgaggaggtaatagggttggagcctcctggctgggatgagtgcccttataaaagggtcgccgggga---------ggccccttccaccacgtgaggacgcagagagaaggtgctgtctatgaaccaggaggcctt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107454 297 -    177848 gtagatgacgggttgaggggtgcagcaaaccaccatggcaggtgtatacccatgtaaccaacctggacgctctgcacatgtatcccagaacttaaagtataat--ggaaaaaaaaaaggaaagaaatcctctctccaaagttgatgatattgggaggtggggtcttcgggaggtgaggaggtaatagggttggagcctcctggctgggatgactgcccttataaaagcgtcgccgggga---------ggccccttccaccacgtgagggcacagagagaaggtgctgtctatgaaccaggaggcctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143331146 271 + 180051392 gtagatgacaggttgatgggtgcagcaaaccaacatggtacgtgtctacctacgtaacgaacctgcacgttctgcacatgtaccgtggaacttaaagtataat-----------taagagaataaATCCTCtctccaaagttgatggtgttggtggatggactgtttgagaggt-aagaggtcatagggttggagcctcatggatgggatgagtgaccttataaaagggacaccggggcgagctccccggccccttcctccacgtgagggcacagagaaaagg-------------------------
i rheMac8.chr6                 I 215 C 0
s macNem1.NW_012017243v1          339882 271 +  25972781 gtagatgacaggttgatgggtgcagcaaaccaacatggtacgtgtctacctacgtaacgaacctgcacgttctgcacatgtaccgtggaacttaaagtataat-----------taagagaataaATCCTCtctccaaagttgatggtgttggtggatggactgtttgagaggt-aagaggtcataggcttggagcctcatggatgggatgagtgaccttataaaagggacaccggggcgagctccccggccccttcctccacgtgagggcacagagaaaagg-------------------------
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        182488 295 -    811265 gtagatgacaggttgatgggcgcagc-aaccaacatggtatgtgtctacctatgtaacgaacctgcacgttctgcacatgtaccacagaacttaaagtataat-----------taagaagagaaatcctctctccaaagctgatggtgtcggtggatggagtgttcgagaggt-aggaggtcatagggttggagtctcatggatgggatgagtgaccttataaaagggaccccggggagagctccccggccccttcctccacgtgagggcacagagaaaaggcgccgtctctgaaccaagaagtcct
i chlSab2.chrUn_KE147541v1     C 0 I 6
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=1542.000000
s hg38.chrX_KI270880v1_alt        195192 7 +    284869 tccatac
s panTro5.chrX                    370019 7 + 155549662 tccatag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107751 7 -    177848 tccatag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        182783 6 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e rheMac8.chr6                 143331417 0 + 180051392 C
e macNem1.NW_012017243v1          340153 0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=99058.000000
s hg38.chrX_KI270880v1_alt        195199 84 +    284869 acacagaacccaccacacctggatctttgtcttccagcctccagagctctgagcggtaaatgtctgcggtttctaagttagccc
s panTro5.chrX                    370026 84 + 155549662 acacacaacccaccacacctggatctttgtcttccagcctccagagctgtgagcagtaaatgtctgctgtttgtaagtcagccc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107758 84 -    177848 acacacaacccaccacacctggatctttgtcttccagcctccagagctgtgagccgtaaatgtctgctgtttgtaagtcagccc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143331417 83 + 180051392 -cacagaacccaccgcaccttgatctccgtcttccagcctccagagctgtgagcggtaaatgtctgctgttcgtaagtcaccca
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          340153 83 +  25972781 -cacagaacccaccgcaccttgatctccgacttccagcctccagagctgtgagcggtaaatgtctgctgttcgtaagtcgccca
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        182789 84 -    811265 acacggaacccaccgcaccttgatctccgtcctccagcctccagagctgtgagcggtaaatgtctgctgttcgtaagtcaccca
i chlSab2.chrUn_KE147541v1     I 6 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          345202 1382 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=140602.000000
s hg38.chrX_KI270880v1_alt        195283 84 +    284869 ctgtgttctgttctgggatagccgcagccccagcCGGCTGGGGTAAGAGAGATAAGAGACCACCTGTGGCCCCTCTCCCTGCAA
s panTro5.chrX                    370110 84 + 155549662 ctgtgttttgttctgtgatagcggcAGCCTCAGCCGGCAGGGGTAAGAGAGATAAGAGACCAGCTGTGGCCCCTCTCCCTGCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    107842 84 -    177848 ctgtgttctgttctgtgatagcggcAGCCTCAGCCGGCAGGGGTAAGAGAGATAAGAGACCAGCTGTGGCCCCTCTCCCTGCAG
i panPan2.chrUn_NW_014024190v1 C 0 T 14
s rheMac8.chr6                 143331500 84 + 180051392 ctgtattctgttctgtgacagcggcaGCCTCAGCCGGCTGGGATAAGAGAGATAAGAGGCCACCTATGGCCCCTCTGCCCCCAG
i rheMac8.chr6                 C 0 C 0
s macNem1.NW_012017243v1          340236 84 +  25972781 ctgtattctgttctgtgacagcggcagcctcagCCGGCTGGGATAAGAGAGATAAGAGGCCACCTATGGCCCCTCTGCCCCCAG
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        182873 84 -    811265 ctgtattctgttccgtgacagcgacagcctcagctgactgggataAGAGAGATAAGAGACCACCTGTGGCCGCTCTCCCCGCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          346584 84 +   1230721 ctgtattctgttctGTGAGAGCCGCAGCCTCAGCCGGCTGGGATAAGAGAGATGAGAGACCACCTGTGGCCCCTCTCCCCGCAG
i colAng1.NW_012115411v1       I 1382 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=12827.000000
s hg38.chrX_KI270880v1_alt        195367 28 +    284869 CCCCTTTCCCTGTGGGAGCAGGAGCTCC
s panTro5.chrX                    370194 28 + 155549662 CCGCTTTCCCTGTGGGAGCGAGAGCCCC
i panTro5.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1        182957 28 -    811265 CCCCTTTTCCTGCGGGAGCAGGAGCTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          346668 28 +   1230721 CCCGTTTTCCTGCGGGAGCAGGAGCTCC
i colAng1.NW_012115411v1       C 0 I 398
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    107926 14 -    177848 T

a score=546.000000
s hg38.chrX_KI270880v1_alt        195395 2 +    284869 TT
s panTro5.chrX                    370222 2 + 155549662 TT
i panTro5.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1        182985 2 -    811265 TT
i chlSab2.chrUn_KE147541v1     C 0 I 462
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584 0 + 180051392 C
e macNem1.NW_012017243v1          340320 0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    107926 14 -    177848 T

a score=4092.000000
s hg38.chrX_KI270880v1_alt        195397 14 +    284869 CCCTCTCCCTGCAG
s panTro5.chrX                    370224 14 + 155549662 CCCTCTCCCTGCAG
i panTro5.chrX                 C 0 I 13590
s panPan2.chrUn_NW_014024190v1    107912 14 -    177848 CCCTCTCCCTGCAG
i panPan2.chrUn_NW_014024190v1 T 14 I 3
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt        195411 4 +    284869 CCCC
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584 0 + 180051392 C
e macNem1.NW_012017243v1          340320 0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    107926 3 -    177848 I

a score=3415.000000
s hg38.chrX_KI270880v1_alt        195415 41 +    284869 TTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATC
s panPan2.chrUn_NW_014024190v1    107929 41 -    177848 TTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGC
i panPan2.chrUn_NW_014024190v1 I 3 T 44
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=32058.000000
s hg38.chrX_KI270880v1_alt        195456 383 +    284869 CCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    107926 383 -    177848 CCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG-AGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 44 T 263
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=6309.000000
s hg38.chrX_KI270880v1_alt        195839 77 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAG
s panPan2.chrUn_NW_014024190v1    108046 77 -    177848 CTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG
i panPan2.chrUn_NW_014024190v1 T 263 T 44
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=9352.000000
s hg38.chrX_KI270880v1_alt        195916 111 +    284869 GAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAT
s panPan2.chrUn_NW_014024190v1    108079 110 -    177848 GAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG-AGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAG
i panPan2.chrUn_NW_014024190v1 T 44 T 264
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=6951.000000
s hg38.chrX_KI270880v1_alt        196027 88 +    284869 CCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCAT
s panPan2.chrUn_NW_014024190v1    107925 89 -    177848 GCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAG
i panPan2.chrUn_NW_014024190v1 T 264 T 89
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=32153.000000
s hg38.chrX_KI270880v1_alt        196115 384 +    284869 CCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTGCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    107925 384 -    177848 GCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGA-TCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 89 T 88
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=7279.000000
s hg38.chrX_KI270880v1_alt        196499 88 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108221 88 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 88 T 132
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=11432.000000
s hg38.chrX_KI270880v1_alt        196587 132 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108177 132 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 132 T 44
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=3798.000000
s hg38.chrX_KI270880v1_alt        196719 44 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108265 44 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 44 T 384
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt        196763 12 +    284869 CTCTCCCTGCAT
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    108309 384 -    177848 T

a score=14436.000000
s hg38.chrX_KI270880v1_alt        196775 176 +    284869 CCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAT
s panPan2.chrUn_NW_014024190v1    107925 177 -    177848 GCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAG
i panPan2.chrUn_NW_014024190v1 T 384 T 177
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=14516.000000
s hg38.chrX_KI270880v1_alt        196951 177 +    284869 CCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATC
s panPan2.chrUn_NW_014024190v1    107925 178 -    177848 GCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGC
i panPan2.chrUn_NW_014024190v1 T 177 T 177
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=16523.000000
s hg38.chrX_KI270880v1_alt        197128 192 +    284869 CCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGA
s panPan2.chrUn_NW_014024190v1    107926 193 -    177848 CCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGA
i panPan2.chrUn_NW_014024190v1 T 177 I 146
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt        197320 15 +    284869 GTGAGAGCTCCTTCC
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    108119 146 -    177848 I

a score=3798.000000
s hg38.chrX_KI270880v1_alt        197335 44 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108265 44 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 I 146 T 176
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=15249.000000
s hg38.chrX_KI270880v1_alt        197379 176 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108133 176 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 176 T 88
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=7279.000000
s hg38.chrX_KI270880v1_alt        197555 88 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108221 88 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 88 T 132
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=11524.000000
s hg38.chrX_KI270880v1_alt        197643 132 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108177 132 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 132 T 88
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=6426.000000
s hg38.chrX_KI270880v1_alt        197775 78 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGG
s panPan2.chrUn_NW_014024190v1    108221 78 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAG
i panPan2.chrUn_NW_014024190v1 T 88 T 373
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt        197853 23 +    284869 AGCTCCTTCCCTCTCCCTGAATC
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    108299 373 -    177848 T

a score=7690.000000
s hg38.chrX_KI270880v1_alt        197876 91 +    284869 CCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCAGCCCC
s panPan2.chrUn_NW_014024190v1    107926 92 -    177848 CCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCC
i panPan2.chrUn_NW_014024190v1 T 373 T 89
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=32591.000000
s hg38.chrX_KI270880v1_alt        197967 380 +    284869 TTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC-TGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    107929 380 -    177848 TTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAATGAGAGCTCCTTCCCTCTCCCCTGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG-AGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 89 T 88
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=7493.000000
s hg38.chrX_KI270880v1_alt        198347 88 +    284869 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108221 88 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 88 T 44
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=3920.000000
s hg38.chrX_KI270880v1_alt        198435 44 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108265 44 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 44 T 88
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=7493.000000
s hg38.chrX_KI270880v1_alt        198479 88 +    284869 CTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108221 88 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 88 T 300
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt        198567 7 +    284869 CTCTCCC
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584 0 + 180051392 C
e macNem1.NW_012017243v1          340320 0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    108309 300 -    177848 T

a score=25514.000000
s hg38.chrX_KI270880v1_alt        198574 301 +    284869 TGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCC
s panPan2.chrUn_NW_014024190v1    108009 300 -    177848 TGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG-AGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCC
i panPan2.chrUn_NW_014024190v1 T 300 T 176
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=4499.000000
s hg38.chrX_KI270880v1_alt        198875 51 +    284869 CTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCC
s panPan2.chrUn_NW_014024190v1    108133 51 -    177848 CTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCC
i panPan2.chrUn_NW_014024190v1 T 176 T 175
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584  0 + 180051392 C
e macNem1.NW_012017243v1          340320  0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=24412.000000
s hg38.chrX_KI270880v1_alt        198926 287 +    284869 TGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAG
s panPan2.chrUn_NW_014024190v1    108009 286 -    177848 TGCAGCCCCTTTCCCTGTGGGAGCCAGAGCTCCTTCCCTCTTCCTGCAGCTCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGATCAG-AGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAG
i panPan2.chrUn_NW_014024190v1 T 175 T 176
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=13381.000000
s hg38.chrX_KI270880v1_alt        199213 158 +    284869 TGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGTGAGAGCTCCTTCCCTCTCCCTGCATCCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCCTCTCCCTGCAT
s panPan2.chrUn_NW_014024190v1    108119 158 -    177848 TCAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCCTCTCCCTGCAGCCCCTTTCCCTGTGGGACTCAGAGCTCCTTCCCTCTCCCTGCAG
i panPan2.chrUn_NW_014024190v1 T 176 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331584   0 + 180051392 C
e macNem1.NW_012017243v1          340320   0 +  25972781 C
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=58945.000000
s hg38.chrX_KI270880v1_alt        199371 133 +    284869 CCCCTTTCCCTGTGGGAGCAGGAGCTCCTTCCTCCACTGAAGAGATGAAGGGTCTCCACTCTGGCTTTTAGCAGGGGCAGAGGTTGCAGGTTCTGTGGGGGCTGCAGACTGGACTGTGCctctctctctctct
s panPan2.chrUn_NW_014024190v1    108277 133 -    177848 CCCCTTTCCCTGTGGGAGCGAGAGCTCCTTCCTCCACTGAAGAGATGAAGGGTCTCCACTCCCGCTTTTAGCAGGGGCAGAGGTTGCAGGTTCTGTGGGGGCTGCAGACTGGACTGTGCctctctctctctgt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chr6                 143331584 133 + 180051392 CCCCTTTTCCAGCGGGAGCAGGAGCTCCTTTCTCCGCTGAGAAGATGAAGGGTCTGCGCTGGGGCTTTTCGCACTGGCAGAGGCTGCAAGCTCTGTGTGGATTGCGGACTGGActctgcctcgccctctctct
i rheMac8.chr6                 C 0 I 315
s macNem1.NW_012017243v1          340320 133 +  25972781 CCCCTTTTCCTGCGGGAGCAGGAGCTCCTTTCTCCGCTGAGAAGATGAAGGGTCTGTGCTGGGGCTTTTCGCACTGGCAGAGGCTGCAAGCTCTGTGTGGATTGCGGACTGGActctgcctctccctctctct
i macNem1.NW_012017243v1       C 0 I 8611
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=18833.000000
s hg38.chrX_KI270880v1_alt        199504 250 +    284869 --ttttctcttctctgcattttccctcgcttctctctctttctttctcttctctctgtttttttcctctttttttctctccccgtc---tctcctcttcctctctctctctctctcacgtctccgtgtttctccccctctttctctctgtctctcttctgtct--gtttcattccttttttctctctgtgcctgtctctctcctcttcctctccctgtctctctccccctctctgtctgtgtttctgcccctctctt
s panPan2.chrUn_NW_014024190v1    108410 251 -    177848 gtttttctcttctctgcattttccctcgcttctctctccttct----cttctctctctttttgttctcttttttcttctccccctcctctctcctcttcctctctctctctctc--acgtctctgtgtttctccccctctttctctctgtctctcttctctctctgtttcattcctttgttctctctctgcctctctctctcctcttcctctccctgtctctctccccttctctgtctgtatttctgcccctctctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e panTro5.chrX                    370238 13590 + 155549662 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=115719.000000
s hg38.chrX_KI270880v1_alt        199754 449 +    284869 tctctcttctctctgtttttttcctctttttctctccccttctctcttctcttcctctccgtctgcctctgtccctcccctctctttcttcctctccctctctcttctctctctctcccctctcctctttcctttctctgtttcattcctctcttttctctctcttctctccctctcccttctcccccctcctctcactGCATCCCAATCCTTTCCTGGCCGTCCTCTCGCCCTCCTTCGCCTCCTCCTCTCCTGGAGGGTCCTACATTCTACTCCTGGCTCTTTCCTTCTCACTCTAGGTTCTCCCAGGGACTTCATCCACACCTATAATCTCATCCACCATCTCAATTCCTACGTCTGTGTTTTCACCCGGGAGCAGGGCTCAGCCAATCTTttattattatcattattattttaAATAAAGGACTAGATGGTAAGAAAAAATACTG
s panTro5.chrX                    383828 442 + 155549662 tctctcttccctccgtttttttcctctttttctctccccttctctcttctcttcctctccgtctccctctgtccctcccctctcttttttcctctccctctctcttctctctctctcccctctcctctttcctttctctgtttcattcctctcttttctctctcttctctccctctccctgctccccc-tcctctcactGCATCCCAATCCGTTCCTGGCCGTCCTCTCGCCCTCCTTCGCCACCTCCTCTCCTGGAGGGTCCTACATTCTACTCCTGGCTCTTTTCTTCTCACTCTAGATTCTGCCAGGGACTTCATCTGCACCTATAATCTCATCCACCATCTCAATTCCTACGTCTGTGTTTTCACCCGGGAGCAGGGCTCAGCCAATCTTTTATT------AGTATTATTTTAAATAAAGGGCTAGATGGTAAGAAAAAATACTG
i panTro5.chrX                 I 13590 C 0
s panPan2.chrUn_NW_014024190v1    108661 439 -    177848 tctctcttctctctgttttttctc---ttttctctccccttctctcttctcttcctctccgtctccctctgtccctcccttctgttt-ttcctctccctctctcttctctctctctcccctctcctctttcctttctctgtttcattcctctcttttctctctcttctctccctctccctgctcccccctcctctcactGCATCCCAATCCGTTCCTGGCCGTCCTCTCGCCCTCCTTCGCCGCCTCCTCTCCTGGAGGGTCCTACATTCTACTCCTGGCTCTTTTCTTCTCACTCTAGATTCTCCCAGGGACTTCATCCACACCTATAATCTCATCCACCATCTCAATTCCTACGTCTGTGTTTTCACCCGGGAGCAGGGCTCAGCCAATCTTTTATT------ATTATTATTTTAAATAAAGGGCTAGATTGTAAGAAAAAATACTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                271836 4890 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=22988.000000
s hg38.chrX_KI270880v1_alt        200203 63 +    284869 TGCATGTGGGTGCTGGATCTTTGCTGTCCTCATGGCCCCTGGTCCGTGAGG--TTGCCCCTAAAA
s panTro5.chrX                    384270 65 + 155549662 TGCATGTGGGTGCTGGATCTTTGCTGTCCACATGGCCCCTGGTCCGTGAGGTTTTGCCCCTAAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    109100 63 -    177848 TGCATGTGGGTGCTGGATCTTTGCTGTCCTCATGGCCCCTGGTCCGTGAGG--TTGCCCCTAAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584                276726 61 +  11138919 TGCCTGTGTGTG--AGTTCTTTGCTGTGGATATGGCTGCTCTTCTCAGAGG--TTGTACCTAAAA
i otoGar3.GL873584             I 4890 I 155
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=71376.000000
s hg38.chrX_KI270880v1_alt        200266 320 +    284869 CATATTTAAGAGAGTATCTCTGAAGTGTCTTCCTACCCTCATTAAATCTCTCATACACGGTCACCTCCCGGGATAAGACGCCtgtgaaccccaaatatctgagacagatctccagcaagtcaggaagtttcttctgccaaggttaagaagacagcgtccgtcacaccatcttaggaggctctgacgacgtgtcccaaggtggtcagggcacagcttgctc-----------------------------------------------tGTGttggtttggtttggaaaagcaggacaatatgaggcgggaagagggtttccagatcacaggtaggcaagagacaaacacttgtgttctgttgagttt
s panTro5.chrX                    384335 322 + 155549662 GATATTT---------------------------------------------ATACACGATCCCCTCCCGGGATAAGATGCCtgtgaaccccaaatatctgagacagatctgcagcaagtcaggaagtttcttttgccagggttaaggagacagcgtccgtcacaccatcttaggaggctctgacgacgtgtcccaagctggtcggggcacagcttgctttctacattttacggagacatgagacgctcatcagtatattcaagctgtgtgttggtttggtttggaaaagcaggacaacatgaggcgggaagagggtttccagatcacaggtaggcaagagacaaacacttgtgttctgttgagttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    109163 322 -    177848 GATATTT---------------------------------------------ATACACGATCACCTCCCGGGATAAGATGCCtgtgaaccccaaatatctgagacagatctccagcaagtcaggaagtttcttttgccaaggttaagaagacagcgtccgtcacaccgtcttaggaggctctgacgacgtgtcccaagctggtcggggcacagcttgctttgtacattttacgtagaaatgagacgctcatcagtatattcaagctgtgtgttggtttggtttggaaaagcaggacaacatgaggcgggaagagggtttccagatcacaggtaggcaagagacaaacacttgtgttctgttgagtTT
i panPan2.chrUn_NW_014024190v1 C 0 I 3046
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I

a score=4192.000000
s hg38.chrX_KI270880v1_alt        200586 53 +    284869 ctttctttttgttttt-tttttttttttGAGATGAGTCTCACTCTGTCACCTGA
s panTro5.chrX                    384657 54 + 155549662 ctttttttttttttttctttttttttttgagatgagtctcactctgtcacctga
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=13013.000000
s hg38.chrX_KI270880v1_alt        200639 66 +    284869 AAATGAGAa--tttttatttttatttttattttttttttgagatggagtcttgctctgttgcccaggc
s panTro5.chrX                    384711 67 + 155549662 aaatgagaatctttttatttttatttttatttttttttt-agatggagtctcgctctgttgcccaggc
i panTro5.chrX                 C 0 I 268
s nomLeu3.chrX                     46350 65 + 141252148 AAATGAGAA--tcttttttttttttcttttttttttttg-agacagagtcttgctctgtcgtccaggc
i nomLeu3.chrX                 N 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=61194.000000
s hg38.chrX_KI270880v1_alt        200705 248 +    284869 tggagtgcagtggtgggatctcggctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggatgacaggcacccgcccccacacctggctattctttgtatttttagtagagatcgggtttcaccatcttggtcaggctggtcttgaactcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagtcactgcgcccg
s panTro5.chrX                    385046 248 + 155549662 tggagtgcagtggtgggatctcggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacagacgcccgccaccacacctggctattcttggtatttttagtagagagggggtttcaccatcttggtcaggctggtcttgaactcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagtcactgcgcctg
i panTro5.chrX                 I 268 C 0
s nomLeu3.chrX                     46415 248 + 141252148 tggagtgcaatggtgtaatctcagctcactgcaaactccacctcttgggtccaagcgatcctcttgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatcttggtcaggctggtcttgaactcctgacctcgtgatctgcccgcctcggcctcccaaagtgccgggatgaccagcatgagccactgcgcccA
i nomLeu3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e chlSab2.chrUn_KE147541v1        182987 462 -    811265 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e rheMac8.chr6                 143331717 315 + 180051392 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=34341.000000
s hg38.chrX_KI270880v1_alt        200953 42 +    284869 tctcgctctgtcacccaggctggagtgcagtggtgggatctc
s panTro5.chrX                    385294 42 + 155549662 gGtcgctctgtcacccaggctggagtgcagtggtgggatctc
i panTro5.chrX                 C 0 C 0
s nomLeu3.chrX                     46663 42 + 141252148 tctcactctgtcacccaggctggagtgcagtggtgtgatctc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332032 42 + 180051392 tctcactctgtcacccaggctggagtgcaatggtgcaatctc
i rheMac8.chr6                 I 315 C 0
s chlSab2.chrUn_KE147541v1        183449 42 -    811265 tctcgctctgtcacctaggctggagtgcaatggtgcaatctc
i chlSab2.chrUn_KE147541v1     I 462 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e gorGor5.CYUI01015925v1          268371 4923 +    417917 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=25427.000000
s hg38.chrX_KI270880v1_alt        200995 19 +    284869 ggctcactgcaacctccac
s panTro5.chrX                    385336 19 + 155549662 ggctcactgcaacctccac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          273294 19 +    417917 ggctcactgcaacctccgc
i gorGor5.CYUI01015925v1       I 4923 C 0
s nomLeu3.chrX                     46705 19 + 141252148 agctcactgcaacctccgc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332074 19 + 180051392 agctcactgcaacctccgc
i rheMac8.chr6                 C 0 C 0
s chlSab2.chrUn_KE147541v1        183491 19 -    811265 agctcactgcaacctccgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e colAng1.NW_012115411v1          346696 398 +   1230721 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=559830.000000
s hg38.chrX_KI270880v1_alt        201014 408 +    284869 ctccc-aggttcaagtgattctcctg-cctcagcctccc-gagtagctgggactacaggtgcctg-ccaccatgcctggctagtttttgtatttttagtagagac-ggggtttcaccatcttcgtcaggctggtcttgaactcctgacct--c--atgatccgccc-acctcagcctcccaaagtgc-tggga-tg--acaggcgtgagccaccgcgcccggtcctgttgagtttctaatt--agcctttccaaaggagaccatgagatatgcatttatctcagtgagtagagggatgctttcagctctTGAGTTCTGTCTTGTCCCTTgtccacgaggaatttc--tgt-ggatagattgtgag---ggaagactgtggctcttttctcctggtagcta------tcttttttttttaggagtcaaataggagac
s panTro5.chrX                    385355 389 + 155549662 ctccc-aggttcaagtgatcctcctg-cctcagcctccc-gagtagctgggagtacaggtgcgtg-ccaccacgcctggctagtttttgtatttttagtagagag-ggggtttcaccatcttggtcaggctggtctcgaactcctgacct--c--gtgatccgccc-gcctcggcctcccaaagtgc-tggga-tg--acaggcgtgagccaccgcgcccggccctgttgagtttctaatt--agcctttccaaaggagaccatgagatacgcatttatctcagtgagtagaaggatg--------------------tcttGTCCCTTgtccaccaggaatttccttgt-gtatagattgtgag---ggaagcctgtggctcttttctcctggtagcta------tcttttgtttt-aggagtaaaataggaggc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1          273313 415 +    417917 ctctcggggttcaggcaattctcctgacatcagcctccctgagtagctgggattacaggcacctgcccacccctcctggctaatttttgtatttttagtagagat-gaagtttcaccatgttgg-caggctcgtcttgaactcctgacca--caagggatccgccctgcctcggcctcccaaagtgcgtgggattt--accggcgtgagccaccgctcccggccctgttgagtttctaatt--agcctttccaaaggagaccatgagatacgcatttatctcagtgagtaga-ggatgctttgaGCTCTTGAGTTCTGTCTTGTCCCTTgtccacgaggaatttc--tgtgggatagattgtgag---ggaagcctgtggctcttttctcctggtagcta------tcttttttttt-aggagtaaaataggaggc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     46724 393 + 141252148 ctccc-gggttcaagtgattctcctg-cctcagcctccc-aagtagctgggattacaggcacctg-ccaccacgcccggctaatttttgtatttttagtagagat-ggggtttcaccatcttggtcaggctggtcttgaactcctgacct--c--gtgatctgccc-gcctcggcctcccaaagtgc-tgcga-tg--acaggcgtgagccaccgcacccggccctgttgagtttctaatt--agcctttccacaggagaccatgagatacgcattcacctcagtgagcagacggatgctttgaGCTCTTGACTTCTGCCTTGTCCCTTgcccacgaggaatttccttgt-gggtagattgtgag---ggaagcctgtg-----------------gcta------tcttttttttttacgagtaaaataggaggc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332093 398 + 180051392 ctccc-gggttcacaccattctccca-cctcatcctccc-gagtagctgggactacaggcgcccg-ccaccatgcctgggtaatttttgtatttttagtagagac-ggggtttcaccatctaggccaggctggtctcgaactcgtgacct--t--gtgatccgccc-gcctcggcctcccaaagtgc-tggga-tg--acaggcgcgagccaccacacccggccctgttgagcttttgatt----------------aggccatgagacacgcatttatctcagggaacagagggatgCAATGAGTTCTTGAGTTCTCTCTTGTCTCTTgtccaagaggaatttccttgt-ggacagattgtggggttggaagcctgtagctcttttctcctagtagcta------tcttttttttt-aggagtaaaaaggggagc
i rheMac8.chr6                 C 0 C 0
s chlSab2.chrUn_KE147541v1        183510 405 -    811265 ctccc-gggttcaagagatcctccca-cctcatcctccc-gagtagctggggttacaggtgccca-ccaccacgcctgggtaatttttgtatttttagtaaagatgggggtttcaccatcttggccaggctggtcttgaactcatgacct--g--gtgatccgccc-gcctcggcctcccaaagtgc-tggga-tg--acaggcgtgagccaccacacccggccCTATTGAGCTTTTGATT----------------AGGCCATGAGACACGCATTTATCTCAGGGAACAGAGAGATATGATGAGTTCTTGAGTTCTGTCTTGTCCCTTGTTCAAGaggtatttccttgt-ggatagattgtggggttggaagtttgtagctcttttctcctagtagctatatcttttttttttttt-aggagtaaaaagcggggc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          347094 420 +   1230721 ctccc-aggttcaagcgattctcctg-cctcagcctccc-gagtagctgggactacaggcgcccg-ccaccatgcccgggtaatttttgtatttttagtagagat-ggggtttcaccgtctcggccaggctggtcttgaactcctgacctcag--gtgatccaccg-gcctcggcctcccaaagtgc-tggga-tgacacaggcatgagccactgtgcctggccctgttgagtttttgattttagcctttcccaaggaggccatgagacacgcatttatctcagtgaaca-AGGCATGCAATGAGTTCTTGAGTTCTGTCTGGTCCGTTgtccaagaggaatttccttgt-ggatagattgtggggttggaagcctgtagctcttttctcctagcagctatat---ctctttttttt-aggagtaaaaaggggggc
i colAng1.NW_012115411v1       I 398 C 0
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I
e panPan2.chrUn_NW_014024190v1    109485 3046 -    177848 I

a score=89531.000000
s hg38.chrX_KI270880v1_alt        201422 41 +    284869 agggttgtctgagacagttcccagcttgaa--tttttcccttT
s panTro5.chrX                    385744 41 + 155549662 agggttgcctgagacagttcccagcttgaa--tttttcccttg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112531 41 -    177848 agggttgcctgagacagttcccagcttgaa--tttttcccttT
i panPan2.chrUn_NW_014024190v1 I 3046 C 0
s gorGor5.CYUI01015925v1          273728 41 +    417917 agggttgtctgagacagttcccagcttgaa--tttttcccttT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47117 43 + 141252148 agggttgcctcagacagttcccagcttgaatttttttcccttt
i nomLeu3.chrX                 C 0 I 52
s rheMac8.chr6                 143332491 41 + 180051392 gggttggcctgagatagttcccagcttgaa--tttttcccttt
i rheMac8.chr6                 C 0 I 53
s chlSab2.chrUn_KE147541v1        183915 41 -    811265 gggttggcctgagatagttcccagcttgaa--tttttcctttt
i chlSab2.chrUn_KE147541v1     C 0 I 53
s colAng1.NW_012115411v1          347514 41 +   1230721 gagttggcctgagatagttcccagcttgaa--tttttcccttt
i colAng1.NW_012115411v1       C 0 I 53
e manLeu1.NW_012108508v1          198728 517 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I
e cerAty1.NW_012001098v1          238793 490 -   1025902 I
e macNem1.NW_012017243v1          340453 8611 +  25972781 I

a score=173164.000000
s hg38.chrX_KI270880v1_alt        201463 38 +    284869 AAGTCGTGTCCTGTATCAGCCAATGCTGGATTTCAGGT
s panTro5.chrX                    385785 38 + 155549662 AAGTCGTGTCCTGTATCAGCCAATGCTGGATTTCAGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112572 38 -    177848 AAGTCGTGTCCTGTATCAGCCAATGCTGGATTTCAGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273769 38 +    417917 AAGTCGTGTCCTGTATCAGCCAATGCTGGATTTCAGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47212 38 + 141252148 aAGTCGTGTCCTGTATGAGTCAATGCTGGAATTCAGGT
i nomLeu3.chrX                 I 52 C 0
s rheMac8.chr6                 143332585 38 + 180051392 AAGTTGTGCCCTGTATCGGTCAATGCTGGAATTCAGGT
i rheMac8.chr6                 I 53 C 0
s macNem1.NW_012017243v1          349064 38 +  25972781 AAGTTGTGCCCTGTATGGGTCAATGCTGGAATTCAGGT
i macNem1.NW_012017243v1       I 8611 C 0
s cerAty1.NW_012001098v1          239283 38 -   1025902 AAGTCGTGCCCTGTATCGGTCAATGTTGGAATTCAGGT
i cerAty1.NW_012001098v1       I 490 C 0
s chlSab2.chrUn_KE147541v1        184009 38 -    811265 AAGTCGTGCCCTGTATCGGTCAATGCTGGAATTCAGGT
i chlSab2.chrUn_KE147541v1     I 53 C 0
s manLeu1.NW_012108508v1          199245 38 -    350446 AAGTCGTGCCCTGTATCGGTCAATGCTGGAATTCAGGT
i manLeu1.NW_012108508v1       I 517 C 0
s colAng1.NW_012115411v1          347608 38 +   1230721 AAGTCGTGCCCTGTATCGGTCAATGCTAGAATTCAGGT
i colAng1.NW_012115411v1       I 53 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                276787 155 +  11138919 I

a score=102767.000000
s hg38.chrX_KI270880v1_alt        201501 29 +    284869 AGGCGGCTGGATTGAAAGATGGATAAATG
s panTro5.chrX                    385823 29 + 155549662 AGGCGGCTGGATTGAAAGACGGATAAATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112610 29 -    177848 AGGCGGCTGGATTGAAAGATGGATAAATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273807 28 +    417917 AGGCGGCTGGGTTGAAC-ATGGATAAATG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47250 29 + 141252148 AAGCGGCTTCACTGAAAGATGGATAAATG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332623 29 + 180051392 TCGCGGCTGGATTCGAAGACGGAGAAATG
i rheMac8.chr6                 C 0 I 27
s macNem1.NW_012017243v1          349102 29 +  25972781 TCGCGGCTGGATTCGAAGACGGAGAAAtg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1          239321 29 -   1025902 TCGCGGCTGGATTCAAGGACGGAGAAATG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184047 29 -    811265 TGGCGGCTGGATTCGAAGAAGGAGAAATG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199283 29 -    350446 TCGCGGCTGGATTCGAAGAAGGAGAAATG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          347646 29 +   1230721 TAGTGGCTGGATTCGAAGACGGAGAAATG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                276942 29 +  11138919 AGGGAGGTTGAATAAGGGATGCAGAAAGG
i otoGar3.GL873584             I 155 C 0
e saiBol1.JH378345                254248 489 +    465904 I

a score=216071.000000
s hg38.chrX_KI270880v1_alt        201530 55 +    284869 AATAAGTGGGTGAGTGAT----TGACATCAGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
s panTro5.chrX                    385852 55 + 155549662 AATAAGTGGGTGAGTGAT----TGACATCGGGGACCAGTT-GGGGTGGGAGGTAAAGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112639 55 -    177848 AATAAGTGGGTGAGTGAT----TGACATCGGGGACCAGTT-GGGGTGGGACGTAAAGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273835 55 +    417917 AATAAGTGGGTGAGTGAT----TGACATCGGGGACCAGTTGGGGGTGGCAGGTGAA-GGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47279 55 + 141252148 AATAAGTGGGTGAGTGAT----TGACATTGGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          349131 59 +  25972781 agtaagtgggggagtgattgagtgaCATCGGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
i macNem1.NW_012017243v1       C 0 I 52
s cerAty1.NW_012001098v1          239350 59 -   1025902 AGTAAGTGGGGGAGTGATTGAGTGACATCGGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184076 59 -    811265 AGTAAGTGGGGGAGTGATTGAGTGACATCGGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199312 59 -    350446 AGTAAGTGGGGGAGTGATTGAGTGACATCGGGGACCAGTT-GGGGTGGGAGGTGAAGGGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          347675 59 +   1230721 AGTAAGTGGGTGAGTGGCTGAATGACACTGGGGACCAGTT-GGGGTGCGAGGTGAAGGGG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                276971 47 +  11138919 AACAAGTGGG------------TAGCACTGAGGACTCGCT-GGGGTCAGAGGTGAGGGGG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332652 27 + 180051392 I

a score=-6570.000000
s hg38.chrX_KI270880v1_alt        201585  3 +    284869 -----------------------------------------------------CTT-----
s panTro5.chrX                    385907  3 + 155549662 -----------------------------------------------------CTT-----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112694  3 -    177848 -----------------------------------------------------CTT-----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273890  3 +    417917 -----------------------------------------------------CTT-----
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47334  3 + 141252148 -----------------------------------------------------CTT-----
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          239409  3 -   1025902 -----------------------------------------------------CTT-----
i cerAty1.NW_012001098v1       C 0 I 48
s chlSab2.chrUn_KE147541v1        184135  3 -    811265 -----------------------------------------------------CTT-----
i chlSab2.chrUn_KE147541v1     C 0 I 40
s manLeu1.NW_012108508v1          199371  3 -    350446 -----------------------------------------------------CTT-----
i manLeu1.NW_012108508v1       C 0 I 49
s colAng1.NW_012115411v1          347734  3 +   1230721 -----------------------------------------------------CTT-----
i colAng1.NW_012115411v1       C 0 I 46
s otoGar3.GL873584                277018 61 +  11138919 CTGTCAGGAGCCAGCAGCATCCACCAGCATTTTCGcccctcccctcccccacccttccccc
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332652 27 + 180051392 I
e macNem1.NW_012017243v1          349190 52 +  25972781 I

a score=6907.000000
s hg38.chrX_KI270880v1_alt        201588 9 +    284869 AACCCTCCA-
s panTro5.chrX                    385910 9 + 155549662 AACCCCCCC-
i panTro5.chrX                 C 0 I 1
s panPan2.chrUn_NW_014024190v1    112697 9 -    177848 AACCCCCCC-
i panPan2.chrUn_NW_014024190v1 C 0 I 1
s gorGor5.CYUI01015925v1          273893 9 +    417917 AACCTCCCC-
i gorGor5.CYUI01015925v1       C 0 I 1
s nomLeu3.chrX                     47337 8 + 141252148 AACCCCCC--
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1        184178 8 -    811265 AACCCCCC--
i chlSab2.chrUn_KE147541v1     I 40 C 0
s colAng1.NW_012115411v1          347783 6 +   1230721 AACCCC----
i colAng1.NW_012115411v1       I 46 C 0
s otoGar3.GL873584                277079 9 +  11138919 -accccttcc
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          199374 49 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e cerAty1.NW_012001098v1          239412 48 -   1025902 I
e rheMac8.chr6                 143332652 27 + 180051392 I
e macNem1.NW_012017243v1          349190 52 +  25972781 I

a score=771.000000
s hg38.chrX_KI270880v1_alt        201597 1 +    284869 T
s panTro5.chrX                    385920 1 + 155549662 T
i panTro5.chrX                 I 1 C 0
s panPan2.chrUn_NW_014024190v1    112707 1 -    177848 T
i panPan2.chrUn_NW_014024190v1 I 1 C 0
s gorGor5.CYUI01015925v1          273903 1 +    417917 G
i gorGor5.CYUI01015925v1       I 1 C 0
s nomLeu3.chrX                     47345 1 + 141252148 T
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          239460 1 -   1025902 T
i cerAty1.NW_012001098v1       I 48 C 0
s chlSab2.chrUn_KE147541v1        184186 1 -    811265 T
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1          347789 1 +   1230721 C
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                277088 1 +  11138919 t
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1          199374 49 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332652 27 + 180051392 I
e macNem1.NW_012017243v1          349190 52 +  25972781 I

a score=174074.000000
s hg38.chrX_KI270880v1_alt        201598 50 +    284869 -------CCTCCACCTCAGCCTGTATAATATTATTTTATTCTTCTAAGGTAACATGA
s panTro5.chrX                    385921 50 + 155549662 -------CCTCCACCTCAGCCTGTATAATATTATTTTCTTGTTCTAAGGTAACGTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112708 50 -    177848 -------CCTCCACCTCAGCCTGTATAATATTATTTTCTTCTTCTAAGGTAACGTGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273904 50 +    417917 -------CCCCCACCTCAGCCTGTATAATATTATTTTATTCTTCTAAGCTAACGTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47346 50 + 141252148 -------CCTCCACCTCAGCCTGTATTATATTATTTTCTTCTTCTAACATAACGTGA
i nomLeu3.chrX                 C 0 C 0
s macNem1.NW_012017243v1          349242 50 +  25972781 -------CCTCCACCCCAGCCTGCATAACGTTATTTTCTTCTTGTAACGTAAGGTCC
i macNem1.NW_012017243v1       I 52 C 0
s cerAty1.NW_012001098v1          239461 50 -   1025902 -------CCTCCACCCCAGCCTGCATAACATTATTTTCTTCTTCTAACGTAAGGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184187 50 -    811265 -------CCTCCACCCCCGCCTGCATAACGTTATTTTCTTCTTCTAACGTAAGGTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199423 50 -    350446 -------CCTTCACCACAGCCTGCATAACGTTATTTTCTTCTTCTAACGTAAGGTGC
i manLeu1.NW_012108508v1       I 49 C 0
s colAng1.NW_012115411v1          347790 50 +   1230721 -------CCTCCACCCCAGCCTGTATAACGTTCTTTTCTTCTTCTCACGTAAGGTGA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                277089 57 +  11138919 ctccccacccctccccCACCCTGCAAGCTGTTTTTTCCTCCTCCTGAAGCAAGATAA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332652 27 + 180051392 I

a score=324877.000000
s hg38.chrX_KI270880v1_alt        201648 76 +    284869 GTTTCTCTCT---------------TTGGGGTTTATCTCTTTTAAAGTTTTGATGT--ATGTACGCTTTCTCCATCTTGCTGTCTTTGTTCAC
s panTro5.chrX                    385971 78 + 155549662 GTTTCTCTCT---------------TTGGGGTTTATCTCTGTCAAAGTTTTGATGTGTATGTACGCTTTCTCCATCTTGCTGTCTTTGTTCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112758 78 -    177848 GTTTCTCTCT---------------TTGGGGTTTATCTCTGTCAAAGTTTTGATGTGTATGTACGCTTTCTCCATCTTGCTGTCTTTGTTCAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          273954 76 +    417917 GTTTCTCTCT---------------TTGGGGTTTATCTCTTTTAAAGTTTTGATGT--ATGTACGCTTTCTCCATCTTGCTGTCTTTGTTCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47396 76 + 141252148 GTTTCTCTCT---------------TTGGGGTTTATCTCTTTTAAAGTTTTGATGT--ATGCACGCTTTCTCTACATGGCTGGCTTTGTTCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332679 76 + 180051392 GTTTGTCTCT---------------TTGGAGTTCATGTCTTCTCAGGATTTGATGT--ATGTACGTTCTCTCCATATTGCCGCCTTTGTTCAC
i rheMac8.chr6                 I 27 I 10
s macNem1.NW_012017243v1          349292 76 +  25972781 GTTTCTCTCT---------------TTGGAGTTCATGTCTTCTCAGGATTTGATGT--ATGTACGTTCTCTCCATATTGCCGCCTTTGTTCAC
i macNem1.NW_012017243v1       C 0 I 10
s cerAty1.NW_012001098v1          239511 76 -   1025902 GTTTCTCTCT---------------TTGGAGTTCATGTCTCCTCAGGTTTTGATGT--ATGTACATTCTCTCCATATTGCCGCCTTTGTTCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184237 76 -    811265 GTTTCTCTCT---------------TTGGAGTTCATGGCTTCTCAGGTTTTGATGT--ATGTACGTTCTCTTCATATTGCCGCCTTTGTTGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199473 76 -    350446 GTTTCTCTCT---------------TTGGAGTTCATGTCTTCTCAGGTTTTGATGT--ATGTACGTTCTCTCCATATCGCCGCCTTTGTTCAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          347840 76 +   1230721 GTTTCTCTCT---------------TTGGGGTTCATCTCTTTTAAAGTTTTGATGC--ACGTATGCTCTCTCCATAGTGCTGCCTTTGTTCAC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584                277146 91 +  11138919 GTTCCTTTTTTCTTTTTCTTTTTTGTTAGGGTTAATCTCTCTTGAAGTTTTGATTT--ATATGCTCCCCTTAAATATTTATTGCTTTGTTTGC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I

a score=102535.000000
s hg38.chrX_KI270880v1_alt        201724 50 +    284869 CTCT-AAC-AATGTATTTTGTTCGATATAAGGTGCTTT-----------------------------------------------GGTGTTTCGTTGTA
s panTro5.chrX                    386049 50 + 155549662 CTGT-AAC-AATGTATTTTGTTCGATATAAGGTGCTTT-----------------------------------------------GGTGTTTCGTTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112836 50 -    177848 CTTT-AAC-AATGTATTTtgttcgatgtaaggtgcttt-----------------------------------------------ggtgtttcgttttg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274030 49 +    417917 CTGT-AACAAATGTA-TTTGTTCGATATAA-GTGCTTT-----------------------------------------------GGTGTTTCGTTTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47472 51 + 141252148 CTCTAAAC-AATGTATTTTGTTCGATATAAGGTGCTTT-----------------------------------------------GGTGTTTCATTTTA
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1          239587 51 -   1025902 CTCTAAAC-AGTTTATTTTGTTCGCTGTAAGGTGCTTT-----------------------------------------------GGCGTTTCGTTTTA
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1        184313 44 -    811265 CTCTAA--------TTTTtgttcgctgtaaggtgcttt-----------------------------------------------ggtgtttcgtttta
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1          199549 51 -    350446 CTCTAAAC-AGTTTATTTTGTTCGCTGTAAGGTGCTTT-----------------------------------------------GGCGTTTCGTTTTA
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          347916 98 +   1230721 CCCTAAAC-AATTTATTTTGTTCGCTCTAAGGTGCTTTGGTGCTTtgcacttgatcttagccaaaaggccgagaagcgatGCTTCGGTGCTTCATTTTA
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584                277237 44 +  11138919 TTCTAAAC-AATTTATTTTGTTCAATATAGGGTCGCTT-----------------------------------------------ATTTTTT-------
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332755 10 + 180051392 I
e macNem1.NW_012017243v1          349368 10 +  25972781 I

a score=166511.000000
s hg38.chrX_KI270880v1_alt        201774 39 +    284869 TTTTTTTAAGTTTGATTCTCCC--TTTTCCATTTTTCTGTC
s panTro5.chrX                    386099 33 + 155549662 TTTTTTTAA------TTCTCCC--TTTTCGATTTTTCTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112886 39 -    177848 tttttttaagtttgATTCTCCC--TTTTCCATTATTCTGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274079 37 +    417917 TTTTTTTAAG-TTGATTCTCCC--TTTTCCATT-TTCTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47523 39 + 141252148 TTTTTTTAAGTTTCATTCTCCC--TTTTCCATTTTTCTATC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332765 39 + 180051392 TTTTTTCAAGTTGGATTCTCCC--TTTCCCATTTTTCTGTC
i rheMac8.chr6                 I 10 I 57
s macNem1.NW_012017243v1          349378 41 +  25972781 TTTTTTCAAGTTGGATTCTCCCTTTTTCCCATTTTTCTGTC
i macNem1.NW_012017243v1       I 10 C 0
s cerAty1.NW_012001098v1          239639 39 -   1025902 TTTTTTCAAGTTGGATTCTCCC--TTTCCCATTTTTCTGTC
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1        184358 39 -    811265 tttttTCAAGTTGGATTCTCCC--TTTCCCATTTTTCTCTC
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1          199601 39 -    350446 TTTTTTCAAGTTGGATTCTCCC--TTTCCCATTTTTCTGTC
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          348015 39 +   1230721 TTTTTTCAAGTTTGAGTCTCCC--TTTCCCATTTTTCTGTC
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584                277281 38 +  11138919 TTTTCCTAAGTTGGATTC-CCA--GTTGCCATTTTTCCTTC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I

a score=212989.000000
s hg38.chrX_KI270880v1_alt        201813 63 +    284869 TCCATGGCGG-AGTCCCGGGAC----CTCCCCAGGGACGGGCGAGTCACAATATCTGTGGCCGACGGG
s panTro5.chrX                    386132 63 + 155549662 TCCGTGGCGG-AGTCCCGGGAC----CTCCCCAGGGACGGGCGAGTCACAATATCTGTGGCCGACCGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112925 63 -    177848 TCCGTGGCAG-AGTCCCAGGAC----CTCCCCAGGGACGGGCGAGTCACAATATCTGTGGCTGACGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274116 62 +    417917 TCCGTGGCGGAAGTCCCGGGAC----CTCCCCAGGAC--GGCGAGTCACAATATCTGTGGCCGACTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47562 61 + 141252148 T--GTGGCGC-AGTCCCGGGAG----CCCCTCGGGGATGGGCGAGTGACAATATCTGTAGCCGACGGG
i nomLeu3.chrX                 C 0 I 1
s macNem1.NW_012017243v1          349419 67 +  25972781 TCTGTGGCGG-AGTCCCAGGAGCCCTCCCCCCGGGGATGGGCGGTTCACCATATCTGTAGCGGACGGG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1          239678 67 -   1025902 TCCGTGGCGG-AGTCCCAGGAGCCCTCCCCCCGGGGATGGGCGGTTCACAGTATCTGTAGTCGACGGG
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1        184397 67 -    811265 TCCGTGGCGG-AGTCCCAGGAGCTCTCCCCCCGGGGATGGGCGGTTCACAATATCTGTAGCCGACGGG
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1          199640 67 -    350446 TCCGTGGCGG-AGTCCCAGGAGCCCTCCCCCCGGGGATGGGCGGTTCACAGTATCTGTAGCCGACGGG
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1          348054 63 +   1230721 TCCGTGGCGG-AGTCCCAGGAG----GCCCCCGGGGATGGGCAGTTCGCAATATCTGTAGCCAACGGG
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584                277319 53 +  11138919 TCGGAGGCGG-ATTCCCAGGGG--------------ACGGGTGGGTCACAATATCCGTAAGTGACGGG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e rheMac8.chr6                 143332804 57 + 180051392 I

a score=437766.000000
s hg38.chrX_KI270880v1_alt        201876 88 +    284869 CCCATCTGTCTTCCTCTCCTGCGTTTTTCAACGATGGTCCATTATGCAAA-CGATCCTGGCCAGAGACAAGGAATAATATCAGATAAGG
s panTro5.chrX                    386195 88 + 155549662 CCCATCTGTCTTCCTCTCCTGCGTTTTTCAACGATGGTCCATTATGCAAA-CGATCCTGGCCAGAGACAAGGAATAATATCAGATAAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    112988 88 -    177848 CCCATCTGTCTTCCTCTCCTGCGTTTTTCAACGATGGTCCATTATGCAAA-CGATCCTGGCCAGAGACAAGGAATAATATCAGATAAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274178 88 +    417917 CCCATCTGTCTTCCTCTCCTGCGTTTTTCAACGATGGTCCATTATGCAAA-CGATCCTGGTCAGAGACAAGGAATAATATCAGATAAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47624 81 + 141252148 CCCATCTGTCTTCCTCTCCTGCGTTTTTCAATGATGGTCCATTATGCAAA-TAATCCTGTTCAGAGACAAGGAATAATATCA-------
i nomLeu3.chrX                 I 1 C 0
s rheMac8.chr6                 143332861 88 + 180051392 CCCATCTGTCTTCCTCTCTTGTGTTTTTCAACGGTGGTCCATTATGCAAA-TGATCCTGGTCAAAGACAGGGAATAATATCAGATAAGG
i rheMac8.chr6                 I 57 C 0
s macNem1.NW_012017243v1          349487 88 +  25972781 CCCATCTGTCTTCCTCTCCTGTGTTTTTCAACGGTGGTCCATTATGCAAA-TGATCCTGGTCAGAGACAGGGAATAATATCAGATAAGG
i macNem1.NW_012017243v1       I 1 I 15427
s cerAty1.NW_012001098v1          239746 88 -   1025902 CCCATCTGTCTTCCTCTCCTGTGTTTTTCAACGGTGGTCCATTATGCAAA-TGATCCTGGTCAGAGACAGGGAATAATATCAGATAAGG
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1        184465 88 -    811265 CCCATCTGTCTTCCTCTCCTGTGCTTTTCAACGGTGGTCCATTATGCAAA-TGATCCTGCTCAGAGACGAGGAATAATATCAGATAAGG
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1          199708 86 -    350446 CCCATCTGTCTTCCTCTCCTGTGTTTTTCAACGGTGGTCCATTATGCAAA-TGATCCTGGTCAGAGAC--GGAATAATATCAGATAAGG
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1          348118 88 +   1230721 CCCATCTGTCTTCCTCTCCTGCGTTTCTCAACGGTGGTCCATTATGCAAA-TGATCCTGGTCAGAGAGGAGGAATAATATCAGATAAGG
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584                277372 75 +  11138919 CCCATCTGTC--------------TTGTCACCCGAGGTCCATTATGCAAAGCGGTTGCAGTCAGATAGCTGGGATAATATCAGATAAGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I

a score=49615.000000
s hg38.chrX_KI270880v1_alt        201964 12 +    284869 GAGAATTACAAT
s panTro5.chrX                    386283 12 + 155549662 GAGAATTACAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    113076 12 -    177848 GAGAATTACAAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274266 12 +    417917 GAGAATTATAAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47705 11 + 141252148 GAGAATTAC-AT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332949 12 + 180051392 AAGAATGACAAT
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          239834 12 -   1025902 GAGAATTACAAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184553 12 -    811265 GAGAATTACAAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199794 12 -    350446 GAGAATTACAAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1          348206 12 +   1230721 GAGAATTACAAT
i colAng1.NW_012115411v1       C 0 I 2070
s otoGar3.GL873584                277447 12 +  11138919 GAGAATTACAAG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345                254248 489 +    465904 I
e macNem1.NW_012017243v1          349575 15427 +  25972781 I

a score=86356.000000
s hg38.chrX_KI270880v1_alt        201976 26 +    284869 GCCATAAATA-GAAGAAGGCTTTTTTT
s panTro5.chrX                    386295 26 + 155549662 GCCATAAATA-GAAGAAGGCTTTTTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    113088 26 -    177848 GCCATAAATA-GAAGAAGGCTTTTTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274278 26 +    417917 GCCATAAATA-GAAGAAGGCTTTTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47716 27 + 141252148 GCTATAAATAGGAAGAAGGCttttttt
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332961 26 + 180051392 GCTATACATA-CAAGAAGGCTTTTTTT
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          239846 26 -   1025902 GCTATACATA-CGAGAAGGCTTTTTTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1        184565 26 -    811265 GCTATACATA-CGAGAAGGCTTTTTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199806 26 -    350446 GCTATACATA-CAAGAAGGCTTTTTTT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584                277459 26 +  11138919 GCTATAAATA-CAAGAAGGAGTTTTTT
i otoGar3.GL873584             C 0 I 4950
e saiBol1.JH378345                254248 489 +    465904 I
e colAng1.NW_012115411v1          348218 2070 +   1230721 I
e macNem1.NW_012017243v1          349575 15427 +  25972781 I

a score=12212.000000
s hg38.chrX_KI270880v1_alt        202002 5 +    284869 TTTTT
s panTro5.chrX                    386321 5 + 155549662 TTTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1    113114 4 -    177848 TTTT-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1          274304 5 +    417917 TTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47743 5 + 141252148 ttttt
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332987 5 + 180051392 TTTTT
i rheMac8.chr6                 C 0 C 0
s cerAty1.NW_012001098v1          239872 5 -   1025902 TTTTT
i cerAty1.NW_012001098v1       C 0 I 4938
s chlSab2.chrUn_KE147541v1        184591 5 -    811265 TTTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1          199832 5 -    350446 TTTTT
i manLeu1.NW_012108508v1       C 0 I 9079
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                277485 4950 +  11138919 I
e colAng1.NW_012115411v1          348218 2070 +   1230721 I
e macNem1.NW_012017243v1          349575 15427 +  25972781 I

a score=-2722.000000
s hg38.chrX_KI270880v1_alt        202007  3 +    284869 T---------TT
s gorGor5.CYUI01015925v1          274309  1 +    417917 T-----------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                     47748 12 + 141252148 tttttttttttt
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chr6                 143332992  3 + 180051392 ---------TTT
i rheMac8.chr6                 C 0 N 0
s chlSab2.chrUn_KE147541v1        184596  3 -    811265 ---------TTT
i chlSab2.chrUn_KE147541v1     C 0 I 5912
e manLeu1.NW_012108508v1          199837 9079 -    350446 I
e saiBol1.JH378345                254248 489 +    465904 I
e otoGar3.GL873584                277485 4950 +  11138919 I
e panTro5.chrX                    386326  0 + 155549662 C
e cerAty1.NW_012001098v1          239877 4938 -   1025902 I
e colAng1.NW_012115411v1          348218 2070 +   1230721 I
e macNem1.NW_012017243v1          349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1    113118  0 -    177848 C

a score=20584.000000
s hg38.chrX_KI270880v1_alt     202010 37 +    284869 GGAATATAAACTTGATCATtttttttaaattttatta
s panTro5.chrX                 386326 35 + 155549662 GGAATATAAACTTGATCTTttttttaaaaattt--ta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 113118 36 -    177848 GGAATATAAACTTGATC-TTTTTTAAAAAttttatta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       274310 35 +    417917 GGAATATAAACTGGATCTTtttttt--aattttatta
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  47760 35 + 141252148 GGAATATAAACTTGATCTTTTTTTA--ACTTTTATTA
i nomLeu3.chrX                 C 0 M 1054
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254248 489 +    465904 I
e otoGar3.GL873584             277485 4950 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=241283.000000
s hg38.chrX_KI270880v1_alt     202047 485 +    284869 ttattatattttaagttttagggtacatgtgcacaacgtgcaggtttcttacatatgtatacatgtgccatgtGTTTTTTGTAACatggtaatactctcttagagaaaggaccacactccctttattcgtttttccctggtatgttattagtttttgtttcttttttttttttttaattttactttaagttctgggatacatatgcagaacgtgcaggtttgttacataggtatatacacgtgccacggtggttggctgcacccatccacccgtcatctacattagtagctgagattacaggtgcccgccaccatgccc-ggcTAATTGTTGTATTTTCAGTGGAGACAGGGTTTCACTATGTTGGCCAGG--CTGCTCTTGAActcacgcctgttatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctcacacggtgaaaccccgtctctacta
s panTro5.chrX                 386361 480 + 155549662 ttattatcttttaagttttagggtacatgtgcacaacgtgcaggtttcttacatatgtatacatgtgccatgtGTTTTTTGTAACATGGTAATACTCTCTTAGAGACAGGACCACACTCCCTTTATTTGTTTTTCCCTGGTATGTTATGAGTTTT-GTTTCtttttttttttt--aattttactttaagttctggggtacatgtgcagaacatgcaggtttcttacacaggtata--cacgtgccacggtggttgggtgcacccatcaacctgtcatctacattagtagctgagattacaggtgcccgccaccatgcca-ggctaattgttgtattttcagtggagacagggtttcactatgttggccagg--ctgctcttgaactcacgcctgttatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctcacacggtgaaaccctgtctctacta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 113154 479 -    177848 ttattatcttttaagttttagggtacatgtgcacaacgtgcaggtttcttacatacgtatacatgtgccatgtgttttttgtaACATGGTAATACTCTCTTAGAGACAGGACCACACTCCCTTTATTTGTTTTTCCCTGGTATGTTATTAGTTTT-GTTTCtttttttttta---aattttactttaagttctggggtacatgtgcagaacatgcaggtttcttacacaggtata--cacgtgccacggtggttggctgcacccatcaacccgtcatctacattagtagctgagattacaggtgcccgccaccatgcca-ggctaattgttgtattttcagtggagacagggtttcactatgttggccagg--ctgctcttgaactcacgcctgttatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctcacacggtgaaaccctgtctctacta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       274345 467 +    417917 tta-----ttttaagttttagggtacat---------gtgcaggtttcttacatatgtatacatgtgccacgtGCTTTTTGTAACATGGTGATACTCTCTTAGAGACAGGACCACACTCCCTTTATTCGTTTTTCCCTGGTATGTTATTAGTTT--GTTTCtttttttttttc--aattttactttaagttctggggtacatatgcagaacgtgcaggtttgttacatacgtgta--cacgtgccacggtggtttgctgcacccaacaacccgtcatctacattagtagctgagattacaggtgcctgccaccatgcccgggctaattgttgtattttcagtggagacagggtttcactatgttggccagggcctgctcttgaactcatgcctgttatcccagcacttt-ggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctacta
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254248 489 +    465904 I
e nomLeu3.chrX                  47795 1054 + 141252148 M
e otoGar3.GL873584             277485 4950 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=139168.000000
s hg38.chrX_KI270880v1_alt     202532 186 +    284869 aaaatac-aaaaattagccgggcgtggtggtggcgggcgcctgtagtcccaggtattcgggaggctgaggcaggaggatcacttgaacccgggaggcggagcttgcggtgagccga-gatcgtgccactgcactccag-cctgggtgacagtgcgagactctgtctc----aaaaaaaaaaaaaaaaaaaaaa
s panTro5.chrX                 386841 183 + 155549662 aaaatac-aaaaattagccaggcgtggtgg---cgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccga-gatcgcgccactgcactccag-cctgggcgacagagtgagactccatctc----aaaaaaaaaaaaaaaaaaaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 113633 178 -    177848 aaaatac-aaaaattagccaggcgtggtgg---caggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccga-gatcgcgccactgccctccag-cctgggcgacagagtgagactccatct---------aacaaaaaaaaaaaaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       274812 188 +    417917 aaaatac-aaaaattagcc-ggcgtggtgg---cgggcacctgtagtcccagctactcgggaggctgaggcaggagactggcgtgaacccgggaggtggagcttgcagtgagccgaggatcgcaccactgcactccagacctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  48850 174 + 141252148 aaaatacaaaaaattagccaggcgtggtgg---cgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccga-gatcgcgccactgcactccag-cctgggcgacagagcgagactccgtctc--------------aaagaaaaaaaa
i nomLeu3.chrX                 M 1054 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254248 489 +    465904 I
e otoGar3.GL873584             277485 4950 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=81823.000000
s hg38.chrX_KI270880v1_alt     202718 103 +    284869 aaGATT-CTTATTTG-CAGGTGACAGAGGGATTCAGAAGGGTCACCTGGCCACTTTTGAACAAGAATCCT-GAGAAATCTACCCA-GTCTGGATGGCCGGCAGCTCA
s panTro5.chrX                 387024 103 + 155549662 aagatt-cttatttg-cgggtgaCAGAGGGATTCAGAAGGGTCACCTGGCCACTTCTGAACAACAATCCT-GAGAAATCTACCCA-GTCTGGATGGCTGGCAGCTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 113811 104 -    177848 aCGATTACTTATTTGTCGGGTGACAGAGGGATTCAGAAGGGTCACCTGGCCACTT-TGAACAACAATCCTAGAGAAATCTA-CCA-GTCNGCATGGCTGGCAGCTCA
i panPan2.chrUn_NW_014024190v1 C 0 T 2643
s gorGor5.CYUI01015925v1       275000 101 +    417917 aaaaTT-CTTATTTG-TGG--GACAGAGGGATTCAGAAGGGTCACCTGGCCACTT-TGAACAACAATCCT-GAGAACTCTACCCAGGTCTGGATGGCTGGCAGCTCA
i gorGor5.CYUI01015925v1       C 0 I 1
s nomLeu3.chrX                  49024 103 + 141252148 aaTATT-CCTATTTG-CGGGTGACAGAGGGATTCAGAAGGGGCACCTGGCCACTTTTGAACAACAATCCT-GAGAAATCTACCCA-GTCCAGACGGCCAGCAGCTCA
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             282435  94 +  11138919 AAGTTT-CTCACTTG-CAGGTGGCAGGGGGCATTGGCCGGGGTGTCTGGC--------AGCAACAG-CCT-GAAAACCCCACACC-GTCCTGACAGTCGGGGACTCT
i otoGar3.GL873584             I 4950 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254248 489 +    465904 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=25853.000000
s hg38.chrX_KI270880v1_alt     202821 40 +    284869 GGAGGGTGAAACTCCAATGGTGTTGGAAAAGCTGAATAAT
s panTro5.chrX                 387127 40 + 155549662 GGAGGGTGAAACTCCAATGGTGTTGGAAAAGCTGAAGAAT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       275102 40 +    417917 GGAGGGTGAAACTCCAATGGTGTTGGAAAAGCTGAAGAAT
i gorGor5.CYUI01015925v1       I 1 C 0
s nomLeu3.chrX                  49127 40 + 141252148 GGACGGTGAAACTCCAATGGCGTTGGAAGAGCTGAAGAAT
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             282529 40 +  11138919 GGGGTACGAAATATCAGTGCTCTTGGCAGAGTGGAAGGAT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254248 489 +    465904 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 113915 2643 -    177848 T

a score=101973.000000
s hg38.chrX_KI270880v1_alt     202861 147 +    284869 TTTTTTTTTTTAGGCACAAAGACTG-AACTATCTCATG-CATTCTTGTAACACCTTGGAAGATGACTTTCCAGCCACGTTCTG--TTATTAGAAAATAAATTAGAAAAATTCTTGGTGAGTGTTTCTATGTATTCCAGGCTACACCTCCCT
s panTro5.chrX                 387167 147 + 155549662 TTTGTTTTTTTAGGCACAAAGACTG-AACTATCTCATG-CATTCTTGTAACACCTTGGAAGATGACTTTCCAGCCATGTTCTG--TTATTAGAAAATAAATTAGAAAAATTCTTGGTGAGTGTTTCTGCATATTCCAGGCTACACCTCCCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       275142 150 +    417917 TTTTTTTTTTTAGGCACAAAGTCTGAAACTATCTCATGACATTCTTGTAACACCTTGGAAGATGACTTTCCAGCCATGTGCTGCTTTATTAGAAAATAAATTAG-AAAATTCTTGGTGAGTGTTTCTGCATATTCCAGGCTACACCTCCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  49167 135 + 141252148 TTT-TTTTTTTAAGCACACAGGCTG-AACTATCTCAT--TAATCT-----CACCC---AAAAT--TTTTCCAGCCATGTTCTG--TTATTAGAAAATAAATTAGAAAAATTCTTGGTGAGTGTTTCTACATATTCCAGGCTACATCTCCCT
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345             254737 147 +    465904 TTTCTCTTTCAAAGCAGAAAGCCTC-AAGCATCTGATG-TATTCGCCCAGCGCGTTCAGAGATGACTTTCCGGGCAAGTTGTG--TTACGAGGAAATAAATCAGAATAATTGTTGGTGAGTGTTTCTCCATATCGCAGGGTATAGGTCCGT
i saiBol1.JH378345             I 489 I 43
s otoGar3.GL873584             282569 131 +  11138919 --------TTTGAGTAGAAAGCCTG-GACTATCTCCTG-AATTTTCCCAACAACTTAGAA-ATGACTTTCTAGCCATGTCCTG--TTATTAGAAAAGACACTAG-AAGCTTCTCCGTGAGTGATTCAACATATTTCGGGCGCCAT------
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 113915 2643 -    177848 T

a score=-3577.000000
s hg38.chrX_KI270880v1_alt     203008 5 +    284869 AC--CCG-
s panTro5.chrX                 387314 6 + 155549662 AC-ACCC-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       275292 7 +    417917 ACCGCCC-
i gorGor5.CYUI01015925v1       C 0 I 1
s nomLeu3.chrX                  49302 4 + 141252148 AC--CC--
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             282700 5 +  11138919 ---TCCCA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254884 43 +    465904 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 113915 2643 -    177848 T

a score=31075.000000
s hg38.chrX_KI270880v1_alt     203013 35 +    284869 CCCCC---CCTTTTTTTTTTTAAAGCCAGCGTGACTCT
s panTro5.chrX                 387320 35 + 155549662 CCCCG---CCCTTTTTTTTTTAAAGCCAGCCTGACTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 111272 35 -    177848 CCCCC---CCCTTTTTTTTTTAAAGCCAGCCTGACTCT
i panPan2.chrUn_NW_014024190v1 T 2643 C 0
s gorGor5.CYUI01015925v1       275300 35 +    417917 CCCCC---CCTTTTTTTTTTTAAAGCCAGCCTGACTCT
i gorGor5.CYUI01015925v1       I 1 C 0
s nomLeu3.chrX                  49306 29 + 141252148 ---------CCATTTTTTTTTAAAGCCAGCCTGACTGT
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             282705 38 +  11138919 CCCCCAAGTTTTCTTTTCTTAAGAGCTGGCCTGACTGT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             254884 43 +    465904 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=275693.000000
s hg38.chrX_KI270880v1_alt     203048 225 +    284869 GACCTTTGGTAACCTCACATTCTTTGCTCAAAAACATGTGATATGAACACAGATGGCTTTCATGCCAACCTAAGTGGTATCATATGCCTCCCTGAAGCCCCCGGCTCCGGCCAG-CCAATTTGC-ACTTTTTTGCC-GCTGAGGAATTGGTACGACGTGCAAA-CAATTCTGCCTTATCAAAAGCAGGACACCTTTTAAACTCTGTGCAAAGTCCTCAAATTGGCTTGA
s panTro5.chrX                 387355 225 + 155549662 GACCTTTGGTAACCTCACATTCTTTGCTCAAAAACATGTGATATGAACACAGATGGCTTTCATGCCAACCTAAGTGGTATCATATGCCTCCCCGAAGCCCCCGGCTCCGGCCAG-CCAATTTGC-ACTTTTTTGCC-GCTGAGGAATTGGTACGACCTGCAAA-CAATTCTGCCTCATCGAAAACAGGACACCTTTTAAACTCTGTGCAAAGTCCTCATATTGGCTTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 111307 225 -    177848 GACCTTTGGTAACCTCACATTCTTTGCTCAAAAACATGTGATATGAACACAGATGGCTTTCATGCCAACCTAAGTGGTATCATATGCCTCCCCGAAGCCCCCGGCTCCGGCCAG-CCAATTTGC-ACTTTTTTGCC-GCTGAGGAATTGGTACGACCTGCAAA-CAATTCTGCCTCATCGAAAACAGGACACCTTTTAAACTCTGTGCAAAGTCCTCATATTGGCTTGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       275335 225 +    417917 GACC-TTGGTAACCTCACATTCTTTGCTCAAAAACATGTGATATGAACACAGATGGCTTTC-TGCCAACCTAAGTGGTATCATATGCCTCCCTGAAGCCCCCGGCTCCGGCCAGCCCAATTTGCAACTTTTTTGCC-GCTGAGGAATTGGTACGACGTGCAAA-CAATTCTGCCTTATCAAAAGCAGGACACCTTTTAAACTCTGTGCAAAGTCCTCATATTGGCTTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  49335 226 + 141252148 GACCTTTGGTGACCTGACATTCTTTGCTCAAAAACATGTGATGTGAATGCAGATGGCTTTCATGCCGACGTAAGTGGTATCATATGCCTTCCTGAGGTCCCCGGCTCTAGCCAG-CCAATTTGC-ACTTTTTCGCC-GCTGAGGAATTGGTACGACGTGCAAACCAATTCTGCCTTATCAAAAGCAGGACACCTTTTAAACTCTGTGCAAAGCCCTCATATTGGCTTGA
i nomLeu3.chrX                 C 0 C 0
s saiBol1.JH378345             254927 227 +    465904 GACCTTCGCTGACCTCACTTTCTCGGCTGGAAAACCCGTCCCAGGATCCCTGATGGCGTTCATGGTGACCTCAGCGGTGACACGTGTTTCGACGAAGCCCCCGGCTGGGTCCCA-GACGTGTGC-AGGTTTTTCCCAGCCGAGGAATCGCTGGGATGTGGAAGCCCCTTGTGGCTCATCAAAAGCAGAAGACCTTTGAGACTCTGTGCAAAGTGCTCACGTTGGCttga
i saiBol1.JH378345             I 43 I 2642
s otoGar3.GL873584             282743 194 +  11138919 GACCTCTGGTAACCTGACATTCTTTGCTCAGAAACATGTGATATTAAAGCTGATTGTTTTCATGCCCACCTAAGTGGTATCATATGCTTCCCCATGG------------------CCAGTTCAC-TCTCTGTCACC-ACTGGGGAAATGG--------------AGATCACAGCGTATCCAAGCCAGGATG-TTTTTGTGCTCTGTGAAAAGTTCTCTGACTGGCTTGA
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=268754.000000
s hg38.chrX_KI270880v1_alt     203273 328 +    284869 TGAA-TAGCTTGGACACGCACCCACACACA-GGATGTTTTGACTTGTGGGTTTAGCCTTGGGATCTGGAGGTTTTGATTTCACCTCAGCTGACATGAACCAGAGACGGTGGGCTGAGAAAGGAAT-CGCTCTTCTGAAAATGAGGCATTTCCAGAGCTCAAAGGGAAGGGAAAA-GGAAGTCAGTGTCTTCCCTGGTTGACGAAGTATGGGAGGTTTCTTTTTCTTTAGGAGTACCTTTCCTCAGGCCTCCCCCGATATTATG----------------GGACATTTGcggacctggatttttctggaca---gaatttatctcagtgtggctgtgattgacaatgagagt
s panTro5.chrX                 387580 291 + 155549662 TGAA-TAGCTTGGACACGCACCCACACACA-GGATGTTTTGACTTGTGGGTTTAGCCTTGGGATCTGCAGGTTTTGATTTCACCTCAGCTGACATGAACCAGAGACGGTGGGCTGAGAAAGGAAT-CGCTCTTCTGAAAATGAGGCATTTCCAGAGCTCAAAGGGAAGGGAAAA-GGAAGTCAGTGTCTTCCCTGGC-------------------------------------CCTTTCCTCAGGCCTCCTCCGATATTATG----------------GGACATTTGCGGACCTGGATTTTTCTGGGCA---GAATTTATCTCAGTGTGGCTGTGATTGACAATGAGAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 111532 291 -    177848 TGAA-TAGCTTGGACACGCACCCACACACA-GGATGTTTTGACTTGTGGGTTTAGCCTTGGGATCTGCAGGTTTTGATTTCACCTCAGCTGACATGAACCAGAGACGGTGGGCTGAGAAAGGAAT-CGCTCTTCTGAAAATGAGGCATTTCCAGAGCTCAAAGGGAAGGGAAAA-GGAAGTCAGTGTCTTCCCTGGC-------------------------------------CCTTTCCTCAGGCCTCCTCCGATATTATG----------------GGACATTTGCGGACCTGGATTTTTCTGGGCA---GAATTTATCTCAGTGTGGCTGTGATTGACAATGAGAGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       275560 327 +    417917 TGAATTAGCTTGGACATGCACCCACACACAGGGATGTTTTGACTTGTGGGTTTAGCCTT-GGATCTGGAGGTTTTGGTTTCACCTCAGCTGACATCAACCAGAGATGGT-GGCTGAGAAA-GAAT-CGCTCTTCTGAAAATGAGGCATTTCCAGAGCTCAAAGGGAAAGGAAAAGGGAAGTCAGTGTCTTCCCTGGTTGACGAAGTACGGGAGGTTTCTTTTTCTTTAGGAGTACCTGTCCTCAGGCCTCC-CCGATCTTACG----------------GGACATTTGCAGACCTGGATTTTTCTGGGCA---GAATTTATCTCAGTGTGGCTGTGATTGACAATGAGAGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  49561 295 + 141252148 TGAA-TACCTTGGACACGCACCCACACACA-AGATGTTTTGACTTGTGGGTTTAGCCTTGGGATTTGGAGGTTTTGATTTCACCTCAGCTGACATGAACCAGAGACGGCGGGCTGAGAAAGGAAT-TGCTCTTCTGAAAACGAGGCATTTGCAGAGCTCAAAGGGAAGGGGAAA-GGAAGTCAGTGTTTTCCCTGGTTGATGAAGTACGGCAGGTTT-----------------CTTTATCT----------------TTAGG----------------AGACATTTGCGGACCTGTATTTTTCTGGGCA---GAATTTATCTCAGTGTGGCTGTGAATGACAATGAGAGT
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             282937 340 +  11138919 CTGA-CAAGTTGGACATG------CAGAAA-AAGAGTCTTAACTTGGGGATTTAGGCTTGGGTGGTGGGAGGTTTG-CCTGATGGTGGCCCACACAAACCTGAAGTGGTCAGCTGGGGAAGGAAGATGGAATTCTCAAAACAAGGCATGTCCAGAGTTGAAAGGGAAGAGAAGT-GGATGTAAGTGTCTGCCCATGTGGACAGAGACTCTGGAGTTTGTTTTATCTTAGGGACACCCAG-CTCAGACCTCTTGAGACCTTATGCTGGTGTTACAGGTAAAGGCATTGGCAGATCTGGAATGTTCTTGGCAACTAAACTTATCTCAGTGTGGCTGTGATTTATAACCAGCGT
i otoGar3.GL873584             C 0 I 302
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=220186.000000
s hg38.chrX_KI270880v1_alt     203601 277 +    284869 ctaaacacaaataagtagaaatatcttaaacttaaagaacttaaacaaattgacaagaaaa-----aaaacaacccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacaaacctataaaaaaaa-tgctcaccatcactggccatcagagaaatgcaaatcaaaaccacgatgagataccatctcacgccagttagaatacgatcagtaaaaagtggggaaacaacaggtgctggagaggatgtggagaaat
s panTro5.chrX                 387871 280 + 155549662 CCAAACACAAATAAGTAGAaatatcttaaacttaaagaacttaaacaaattgacaagaaaaa-aagaaaacaacccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacaaacttataaaaaaag--gctcaccatcactggccgtcatagacatgcaaatcaaaaccacaatgagacaccacctcacgccacttagaatacgatcagtaaaaagtcgggaaacaacagatgctggagaggatgtggagaaat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 111823 282 -    177848 CCAAACACAAATAAGTAGAaatatcttaaacttaaagaatttaaacaaattgacaagcaaaa-aagaaaacaacccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacaaacttataaaaaaaaaagctcaccatcacgggccgtcatagacgtgcaaatcaaaaccacaatgagacaccacctcacgccacttagaatacgatcagtaaaaagtcgggaaacagcagatgctggagaggatgtggagaaat
i panPan2.chrUn_NW_014024190v1 C 0 I 5179
s gorGor5.CYUI01015925v1       275887 270 +    417917 CCAAACACAAATAAGTAGAAATat------cttaaagaacttaaacaaattgacaagaaaaa----aaaacaa-ccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacaaacctataaaaaaaa-ggctcatcatcactggccatcagagacatgc-aatcaaaaccaccatgagataccatctcatgccagttagaacacgatcagtaaaaagtcgggaaacagcagatgctggagaggatgtggagaaat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  49856 283 + 141252148 GCAAAGACAAATAAGTAGAaatattttaaacttaaagaacttaaacaaattgacaagaaaaaaaaaaaaacaacccatcaaaaagtgagcaaaggatacgaacagacacttctcaaaagaagacatttatgcagccaacaaacctataaaaaaaaaggctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcaggccagttacaatatgattattgaaaagtcaggaaacaacagatgctggagaggatgtggagaaat
i nomLeu3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e otoGar3.GL873584             283277 302 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=517279.000000
s hg38.chrX_KI270880v1_alt     203878 643 +    284869 aggaacgcttttacaccgttggtgggactgtaaactagttc-aaccattgtggaagacagtgtggcgattcctcagggatctagaaccagaaataccatttgacccagccatcccattactgggtatatacccaaaggagtataaatcatgctgctataaagacacatgcacacgtatgtttattgc--agcactattcacaatagcaaagacttggaaccaacccaaatgtccatcagcgatagactggatgaagaaaatgtggcacatacacaccatggaatactatgcagccatcaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccaccattgtcagcaaactgtcgcaaggacagaaaaccaaacactgcatgttctccttcataagtgggagttgaacaatgag-aacacatggacacagggaggggaacatcacacaccagggcctgtcgggggctgggggagcta-ggggagggagagcattaggacaaatacctaatgtagatgacgggttgatgggtgcagcaaaccaccaTGGCACGTGTACACCTACGTAACAAACCTGCCCGTTCTCCACA-TGTA-CCCAGAACGTAAAGTATAATTTAAAAAATAAATAAAA-ATAA
s panTro5.chrX                 388151 641 + 155549662 aggaacgcttttacaccgttggtgggagtgtaaattagttc-aaccattgtggaagacagtgtggtgattcctcaaggatctagaactagaaataccatttgacccagcaatcacattactgggtatataccc-aaggagtataaatcatgctgctataaagacacatgcacacgtatgtttattgc--ggcactattcacaatagcaaagacttgaaaccaacccaaatgtccatcaacgatagactggatgaagaaaatgtggcacatagacaccatggaatactatgcagccatcaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattgtcagcaaactgtcgcaaggacagaaaaccaaacactgcatgttctccttcatcagtgggagttgaacaatgag-aacacatggacacagggaggggaacatcacacaccagggcctgttggggggtggggg-gata-ggggagggagagcattaggacaaatacctaatgtagatgacgggttgatgggtgcagcaaaccaccatggcacgtgtatacccatgtaacaaacctgcccgttctccaca-tgta-cccagaatgtaaagtataatttaaaaaataaaTAAAA-ATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 117284 642 -    177848 aggaaagcttttacaccgttggtgggagtgtaaattagttc-aaccattgtggaagacagtgtggtgattcctcaaggatctagaactagaaataccatttgacccagcaatcacattactgggtatataccc-aaggagtataaatcatgctgctataaagacacacgcacacctatgtttattga--ggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaacgatagactggatgaagaaaatgtggcacatacacaccatggaatactatgcagccatcaaaaaggatgagttcatttcctttgcagggacatggatgaagctggaaaccatcattgtcagcaaactgttgcaaggacggaaaaccaaacactgcatgttctcactcatcagtgggagttgaacaatgag-aacacatggacacagggaggggaacatcacacaccagggcctgttggggggtggggg-gatagggggagggagagcattaggacaaatacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacgtgtatacccatgtaacaaacctgcccgttctccaca-tgta-cccagaatgtaaagtataatttaaaaaataaataaaa-aTAA
i panPan2.chrUn_NW_014024190v1 I 5179 C 0
s gorGor5.CYUI01015925v1       276157 640 +    417917 aggaacgcttttacactgttggtgggaatgtaaattagttcaaaccattgtggaagacagtgt-gtgattcctcaaggatctagaactagaaataccatttgacccagccatcccatcactgggtatatacccaaaggactataaatcatgctactatacagacacatgcacacgtatgtttattgccaggcactattcacaacagcaaaaacttggaaccaacccaaatgtccatcaacgatagactggataaagaaaatgtggcacatagacaccatggaatactatgcagccat-aaaaaggatgagttcatgtcctttgcagggacgtcggtgaa----gaaaccatcattctcagcaaactatcacaagt-cagaaaaccaaacactgcatgttctccttcataagtgggagttgaacaatgagaaacacatggacacaggga-gggaacatcacacaccagggcctgtcgggggctgggggagcta-ggggagggagagcataaggacaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacgtgtatatctgcgtagcaaacctgcccgttctccaca-tgta-cccagaacataaagtataatttaaaaaataaaTAAAAGATAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  50139 643 + 141252148 aggaacgcttttacactgttggtgggactgtaaactagttc-aaccattgtggaagacagtgtggagattcctcaaggatctagaaccagaaataccatttgacccagccatcccattactacatatatacccaaaggattataaatcattctactatcaagacacatgcacacatatgtttattgc--ggcactattcacaatagcaaaaacttggaaccaacccaaatgaccatcagtgatagactggataaagagaatgtggtacatagacaccatggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaacatcattctcagcaaactaacagaggaacagaaaaccaaacactgcctgttctcactcataagtgggagttgtacaatgag-aacacagggacacagggaggggaacatcacacaccggggcctgttggggggtggggg-gata-ggggaaggagagcattaggacaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacgtgtatacctgtgtaacaaacgtgcatgttctgcacagtgtaccccagagtttaaagtataa-ttaaaaaataaaTAAAA-ATAA
i nomLeu3.chrX                 C 0 I 4731
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e otoGar3.GL873584             283277 302 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=285569.000000
s hg38.chrX_KI270880v1_alt     204521 546 +    284869 ATTTATCAACTGTCCTTTCTTCTCCAACTGGCAGA-GCACCTTCCCTTTCTGTTGCATTTTTTTCCTCATCTTTCTG-CAAGAATTCTCTCTTCCAGGAACAAGCCCTCTTTGGCAGTGGAGCTCTGGGGCCATTCTTATCCAGAACAGACATGCCTGGGCAACTA-GACATAGAGAAATTATGAGttttttattttatttcatggactatttatttattttttagagacaaagtcttgctctgtttctcaggctggagtgcagtggtacaatcaaagctcatggcagcctcaaccccctgggctcaagggaatcctcctgcctcagcctcccaagtagctgggaccacaggcacccaccaccacgcctgactaa-ttttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccgcctgcctcggcctcctaaagtgctgggatgacaggcatcagccatcacacccagcTCAATTTTTTATTTTGAATGAGAGAGCAAAGTAGGATTGTGAG
s panTro5.chrX                 388792 547 + 155549662 ATTTATCAAGGGTCCTTTCTTCTCCAACTGGCAGA-GCACCTTCCCTTTCTATTGCATTTTTTTCCTCATCTTTCTG-CAAGAATTCTCTCTTCCAGGAACAAGCCCTCTTTGGCAGTGGAGCTCTGGGGCCATTCTTATCCAGAACAGACATGCCTGGGCAACTA-GACATAGAGAAATTATGAGTTTTTTATTTTATTTCATGGACTAtttatttattttttagagacaaagtcttgctctgtttctcaggctggagtgcagtggtacaatcaaagctcatggcagccttaaccccctgggctcaagggaatcctcctgcctcagcctcccaagtagctgggaccacaggcacccaccaccacgcccggctaatttttttgtatttttagtagagacagggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcctaaagtgctgggatgacaggcatcagccatcacacccagcTCAATTTTTTATTTTGAATGAGAGAGCAAAGTAGGATTGTGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 117926 546 -    177848 ATTTACCAAGGGTCCTTTCTTCTCCAACTGGCAGA-GCACCTTCCCTTTCTATTGCATTTTTTCCCTCATCTTTCTG-CAAGAATTCTCTCTTCCAGGAACAAGCCCTCTTTGGCAGTGGAGCTCTGGGGCCATTCTTATCCAGAACAGACATGCCTGGGCAACTA-GACATAGAGAAATTATGAG-TTTTTATTTTATTTCATGGACTAtttatttattttttagagacaaagtcttgctctgtttctcaggctggagtgcagtggtacaatcaaagctcatggcagccttaaccccctgggctcaagggaatcctcctgcctcagcctcccaagtagctgggaccacaggcacccaccaccacgcccggctaatttttttgtatttttagtagagacagggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcctaaagtgctgggatgacaggcatcagccatcacacccagcTCAATTTTTTATTTTGAATGAGAGAGCAAAGTAGGATTGTGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       276797 539 +    417917 ATTTGTCAAGTGTCCTTTCTTCTCCAACTGGCAGAGGCACCTTCCCTTTCTATTGCATTTTTTTCCTCATCTTTCTGCCAAGGATTCTCTCTTCCAGGAACAAGCCCTCTTTGGCAGTGGAGCTCTGGGGCCATTCTTATCCAGAACAGACATGCCTGGGCAACTAGGACATAGAGAAATTATGAGTTTTTTATTTTATTTCACGGACTATT------Atttttagagacaaagtcttgctctgtttctcaggctggagtgcagtggtacaatcaaagctcatggcagcctcaa-cccctgggctcaagggaatcctcctgcctcagcctcccaagtagct-ggaccacaggcacccacca-cacgcccggctaa-ttttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctccggacctcatgatctgcctgcctcggcctcctaaaatgctgggatgacaggcatcagccgtcacacccAACTCAATTTTTTA-TTTGAATGAGAGAGCAAAGTAGGATTGTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283277 302 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=62045.000000
s hg38.chrX_KI270880v1_alt     205067 83 +    284869 TGAGGTTCTATTTTGCCATAAGAGGAAAAGAAAACAT-ACCTCCAGGGATAATCACCCTCATTCCATAGGAGAAAGTCA-TTTTA
s panTro5.chrX                 389339 83 + 155549662 TGAGGTTCTATTTTGCCGTAAGAGGAAAAGAAAACAT-ACCTCCAGGGATAACCACCCTCATTCCATAGGAGAAAGTCA-TTTTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 118472 83 -    177848 TGAGGTTCTATTTTGCCGTAAGAGGAAAAGAAAACAT-ACCTCCAGGGATAACCACCCTCATTCCATAGGAGAAAGTCA-TTTTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       277336 84 +    417917 TGAGGTTCTATTTTGCCGTAAGAGGAAAAGAAAACAT-ACCTGCAGGGATAACCACCCTCATTCCATAGGAGAAAGTCATTTTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             283579 84 +  11138919 TGAGGTTTTATTTTGCCATCAGAAGAAATGAAAACACAACCTCCACTTGTACCCACCCTCCTTCCACGAGGTAAAGTCA-TTTTA
i otoGar3.GL873584             I 302 I 4291
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=131330.000000
s hg38.chrX_KI270880v1_alt     205150 244 +    284869 ggtcgagcttgatggctcatgcctgtcatcccagcactttgggaggctgagatgagtgttcaggggttgtagaccagtctgggcaacatggtgaaaccccatctctactaaaatacaaaacatcagccaggtgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggcatgtgaattgcttgagcccaggaggtggaggttgcagttagcagagatcgcaccactgcacagcctg
s panTro5.chrX                 389422 244 + 155549662 ggtcgagcttgatggctcatacctgtaatcccagcactttgggaggctgagatgagtgttcaggggttggagaccagtctgggcaacatggtgaaaccccatctctactaaaacacaaaacatcagccaggtgtggtggtgcacgcctgtaatcccagctactcaggaggctgaggcctgtgaattgcttgagcccaggaggtggaggttgcagtgagcagagatcgcaccactgcacagcctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 118555 244 -    177848 ggtcgagcttgatggctcatgcctgtaatcccagcactttgggaggccgagatgagtgttcaggggttggagaccagtctgggcaacatggtgaaaccccatctctactaaaacacaaaacatcagccaggtgtggtggtgcacgcctgtaatcccagctactcaggaggctgaggcctgtgaattgcttgagcccaggaggtggaggttgcagtgagcagagatcgcaccactgcacagcctg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       277420 243 +    417917 ggtcgagcttgatggctcatgcctgtaatcccagcactttgggaggccaagatgggtgttcgggggttggagaccagcctgggcaacatggtgaaaccacatctctactaaaatacaaaacattagccaggtgtggtggtgcatgcctgtaatcccagctactcggga-gctgaggcctgtgaattgcttgagcccaggaggtggaggttgcagttagcagagatcgcaccactgcacagcctg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       348218 2070 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=66604.000000
s hg38.chrX_KI270880v1_alt     205394 75 +    284869 CTTGGCTGTTTTATTCTCTGCAGCTCCTCTGGTCCTGGTGGGTTCAtttctttgctcccatctcagtgagatctg
s panTro5.chrX                 389666 75 + 155549662 CTTGGCTGTTTTATTCTCTGCAGCTCCTCTGGTCCTGGTGGGTTCATTTCTTTGCTCCCATCTCAGTGAGATCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 118799 75 -    177848 CTTGGCTGTTTTATTCTCTGCAGCTCCTCTGGTCCTGGTGGGTTCATTTCTTTGCTCCCATCTCAGTGAGATCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       277663 75 +    417917 CTTGGCTGTTTTATTCTCTGCAGCTCCTCTGGTCCTGGTGGGTTCATTTCTTTGCTCCCATCTCAGTGAGATCTG
i gorGor5.CYUI01015925v1       C 0 I 238
s colAng1.NW_012115411v1       350288 75 +   1230721 CTTGGCTGTTTTATTCTCTGCAGCTCCCCTGGTCCTGGTGGGTTCCTTTACTTCCTCCCATGTCAATGAGATCTG
i colAng1.NW_012115411v1       I 2070 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=27933.000000
s hg38.chrX_KI270880v1_alt     205469 54 +    284869 gggaaggagcaggttgaacacctggatccaaacagccaggcttagcaaaagtct
s panTro5.chrX                 389741 54 + 155549662 GGGAAGGAGCAGGTTGAACACCCGGATCCAAACAGCCAGGCTTAGCAAAAGtct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 118874 54 -    177848 CGGAAGGAGCAGGTTGAACACCTGGATCCAAACAGCCAGGCTTAGGAAAAGtct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s colAng1.NW_012115411v1       350363 54 +   1230721 GGGAAGGAGCAGGGTGAACACCTGGATCCAAACAGCCAGGCTTGGCGAAAGTCT
i colAng1.NW_012115411v1       C 0 I 66
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e gorGor5.CYUI01015925v1       277738 238 +    417917 I

a score=15071.000000
s hg38.chrX_KI270880v1_alt     205523 63 +    284869 gtctttc-tttcttttcttttccttctttcctttctttctttctttctttctttctttctttct
s panTro5.chrX                 389795 64 + 155549662 gtctttcttttcttttcttttccttcttttctttctttctttctctctctctctctctctttct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 118928 63 -    177848 gtctttc-tttcttttcttttccttctttcctttctttctttctctctctctgtctctctctct
i panPan2.chrUn_NW_014024190v1 C 0 I 205
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       350417 66 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e gorGor5.CYUI01015925v1       277738 238 +    417917 I

a score=715.000000
s hg38.chrX_KI270880v1_alt     205586 9 +    284869 ttctttctt
s panTro5.chrX                 389859 9 + 155549662 ttccttctt
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       350417 66 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e gorGor5.CYUI01015925v1       277738 238 +    417917 I
e panPan2.chrUn_NW_014024190v1 118991 205 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     205595 588 +    284869 tctttctttctttctctttctttcttttctttctttctctttctttcttttctttctttctctttctttctttctttctttctttctttcctttctttctcttttttctttctttctttctttcttgctttctctttctttctttttctttcttttctttctctttctttcttttctttctttctctttctttcttttctttctttctttctttctcttttttctttctttcttgcttgctttctctttctttctctttctttctttcctttctttctttctttctttctttcctttctttctcttttttctttctttctttcttgcttgctttctctttcttttctttctttctctttctttctttttcctttcttccttccttttttccttccttcctttcttcccttctttctttctttctcttttttctttctttctttcttgcttgcttgctttctctttctttctttcttttctttctttttcctttcttccttcctttcttttttccttccttcctttcttcccttctttcttcccttctttctttcttctttctttctttctttctttctttcagaaaaa
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e panTro5.chrX                 389868   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       350417  66 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e gorGor5.CYUI01015925v1       277738 238 +    417917 I
e panPan2.chrUn_NW_014024190v1 118991 205 -    177848 I

a score=1370.000000
s hg38.chrX_KI270880v1_alt     206183 16 +    284869 ctttctttctttcttt
s gorGor5.CYUI01015925v1       277976 16 +    417917 cttcctttctttcttt
i gorGor5.CYUI01015925v1       I 238 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e panTro5.chrX                 389868  0 + 155549662 C
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       350417 66 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 118991 205 -    177848 I

a score=37034.000000
s hg38.chrX_KI270880v1_alt     206199 141 +    284869 ccttccttccttcctttctgttttctttCTCTTCTTTTTGGCACAAACACATTTATTTATTTACTTTTAATAATAAATAAACACATTTATTTATTATTTACTTATTTTTGTAAATAAGTAAATAAttatttttgagatgaa
s panTro5.chrX                 389868 140 + 155549662 ccttccttccttcctttctgttttctttctctt-tttTTGGCACAAACACatttatttatttacttttaataataaataaacacatttatttattatttacttatttTTGTAAATAAGTAAATAATTAtttttgagatgaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       277992 140 +    417917 ctttccttccttcctttctgttttctttctctt-tttTTGGCACAAACACatgtatttatttacttttaataataaataaacacatttatttattatgtacttatttTTGTAAATAAGTAAATAATTAtttttgagatgaa
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       350417  66 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 118991 205 -    177848 I

a score=228612.000000
s hg38.chrX_KI270880v1_alt     206340 490 +    284869 tctcgctctgtc-cccaggctggagtgcagtggcacgatctcagctcactgcaacctctgtgtcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtatgcaccaccacacctggctaacttttgtatttttagtagagacggggtctcaccatcttggtcaggctggtctcgaactcctgatctcgtgattctccagccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggccACACATTTATTTATTAACCAAAGGGATGATCCTAATTAATCCAACACTTTGAAATAGCTGCATGGAAAATGGTTGTGATAAAGATAATTGAACACAGTAATGAAAAAA------GAAGCACTATGCAGATTTGCTTCATTGGACTGAGCATGTTTATTCTCGTAGTTAATTCCTGTCCAAAGTAATGATGCGATttttatttattttattttattttatttattta
s panTro5.chrX                 390008 495 + 155549662 tctcgctctgtc-cccaggctggagtgcagtggcacgatctcagctcacggcaacccctgtgtcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccacgcctggctaacttctgtatttttagtagagacggggtctcaccatcttggtcaggctggtctcgaactcctgatctcgtgattctcccgccttggcctcccaaagtgctgggattacaggcgtgagtcaccatgcctggccACACATTTATTTATTAACCAAAGGGATGATCCTAATTAATCCAACACTTTGAAATAGCTGCATGGAAAATGGTTGTGATAAAGATAATTGAACACAGTAATGAAAAAA-AAAAAGAAGCACTATGCAGATTTGCTTCATTGGACTGAGCATGTTTATTCTCGTAGTTAATGCCTGTCCAAAGTGATGATGGGATttttatttattttattttattttatttattta
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       278132 488 +    417917 tctcactctgtc-cccaggctggagtgcagtggcacgatctcagctcactgcaacctctgtgtcccgggttcaagcgattctcctgcctcagcctcccgagtagct-ggattacaggcatgcaccaccactcctggctaacttttgtatttttagtagagatggggtttcaccatcttggtcaggctggtctcaaactcctgatctcgtgattctcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggccACACATTTATTTATTAACCAAAGGGATGATCCTAATTAATCCAACACTTTGAAATAGCTGCATGGAAAATGGTTGTGATAAAGATAATTGAACACAGTAATGAAAAAA--TAAAGAAGCAGTATGCAGATTTGCTTCATTGGACTGAGCATGTTTATTCTCGTAGTTAATGGCTGTCCAAAGTGATGATGGGATTTTTA-----tttattttattttatttattta
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       350483 476 +   1230721 tctcgctctgtcgcccaggctgcagtgcggtggcacgatctcggctcactgcaacctctgcttcccgggttcacgccattctcctgcctcagcctcccgagtagctgggacgacag----gcgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccctgttgctcaggctgg--------------tgtcgtgattctcctacctcggcctccctaagtgctgggatgacaggcgccagccaccgtgcgtggccACACATTTAGTTATTAAGAAAAGGGATGATCCTAATGAATCCAACACTTTGAAATAGCTGCCTGGAAAATGTTTGTGATAAAGAGAATTGAACACAGTAATTAAAAAAAAAAAAGAAGCAATATGCAGATTTGCTTTACTGCACTGAGTGTGTTTATTCTCATAGTTACTTCCTGTCCAACGTGATGATGGGATTTTTA-TTAttttattttattt--tttattta
i colAng1.NW_012115411v1       I 66 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 118991 205 -    177848 I

a score=53559.000000
s hg38.chrX_KI270880v1_alt     206830 73 +    284869 -tttttttgagatggagtctcactc-tgttgcccaggctggagtgcaatggcaggatctcggctcactgcaacct
s panTro5.chrX                 390503 73 + 155549662 -tttttttgagacagagtctcactc-tgttgcccaggctagagtgcaatggcaggatctcggctcactgcaacct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 119196 74 -    177848 -ttttttggagatggagtcttgctcttgtcgcccaggctgtagtgcaatagcacgatctcggcttactgcaacct
i panPan2.chrUn_NW_014024190v1 I 205 C 0
s gorGor5.CYUI01015925v1       278620 72 +    417917 -tttttttgagacggagtctcactc-tgtcacccaggctggagtgcaat-gcaggatcttggctcactgcaacct
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       350959 74 +   1230721 ctgatttagagatggagtcttaccc-tgtcgcccaggctggagtgcagtggcaggatctcggctcactgccacct
i colAng1.NW_012115411v1       C 0 I 70
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=125626.000000
s hg38.chrX_KI270880v1_alt     206903 235 +    284869 ccacctc-----------------tcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacacccggctcatttttgtattcttagcagagacggggtttcaccatgttggtcaggctgctctcaaactcctgatctcatgatttgcccacctcagcctcccaaagtgctgggatgacaggcctgagccaccgcacctgaccATGATGCTGGGATTTTGATTCTACTTGTTCATAGATGT
s panTro5.chrX                 390576 252 + 155549662 ccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgcaccaacacgcccggctcatttttgtatttttagcagagacggggtttcaccatgtcggtcacgctgctctcaagctcctgatctcatgatttgcccacctcagcctcccaaagtgctgggatgacaggcctgagccaccgcacctgaccATGATGCTGGGATTTTGATTCTACTTGTTCATAGATGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 119270 252 -    177848 ccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcgcgcaccaccacgcccggctaatttttgtatttttagcagagacggggtttcaccatgttggtcacgctgctctcaagctcctgatctcatgatttgcccacctcagcctcccaaagtgctgggatgacaggcctgagccaccgcacctggccATGATGCTGGGATTTTGATTCTACTTGTTCATAGATGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       278692 249 +    417917 ccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcctagctaatttttgtatttttagcagagacggggtttcaccatgttggtcaggctgctctcaaactcctattctcatgatttgc---cctcagcctcccaaagtgctggaatgacaggcctgagccaccgcacctgtccATGATGCTGGAATTTTGATTCTACTTGTTCATAGATGT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       351033  70 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=100348.000000
s hg38.chrX_KI270880v1_alt     207138 117 +    284869 GAGTAGAGGTGACTTTGCTCATCACACAGTCCGACACTAATTTCCCATCTTTTGGTTTTCTTGTTAGTCTGAGTTTTTCTGTCCTCACTTGTGGTTTCTTCAAACTTCTCTCCCAGG
s panTro5.chrX                 390828 117 + 155549662 GAGTAGAGGTGACTTTGCTCATCACACAGTCCGACACTAATTTCCCATCTTTTGGTTTTCTTGTTAGTCTGAGTTTTTCTGTCCTCACTTGTGGTTTCTTCAAACTTCTCTCCCAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 119522 117 -    177848 GAGTAGAGGTGACTTTGCTCATCACACAGTCCGACACTAATTTCCCATCTTTTGGTTTTCTTGTTAGTCTGAGTTTTTCTGCCCTCACTTGTGGTTTCTTCAAACTTCTCTCCCAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       278941 117 +    417917 GAGTAGAGGTGACTTTGCTCATCACACAGTCCGACACTAATTTCCCATCTTTTGGTTTTCTTGTTAGTCTGAGTTTTTCTGTCCTCACCTGCGGTTTCTTCAAACTTCTCTCCCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       351103 117 +   1230721 GAGTACAGGTGACTCTGTTCACGACACAGTCCGACACTAATTTCCCATCTTTCCCTTTTCTTATTCGTCTGTGTTTTTCTGCCCTCAGCTGTGGTTTCTTCAAACTTCTCTCCCAGG
i colAng1.NW_012115411v1       I 70 I 988
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=650058.000000
s hg38.chrX_KI270880v1_alt     207255 1305 +    284869 GTACAGGAACACTGTCTTCTCAAAGTGCCCTCAGTTTTTCTGGTGAGACTTTTGCCATCACAAGTCACGATACAATCTGGTTCGGCCATTGAGTCCGTTTTTCCCAAAGCGATTCAGACTCCTAGTTCCTTCACGTATTCATCAAAGCGTTTGCTGTCCACCAGGTGCCATCTTCCTTCCGGCTGTTGGATGGGGGCCAATTCCTTAGAAGGGCGGGGGTCTCGGAGAGATGGATGAGGCTTCCTGGAGAAAGGTGGGTTGGCCCTGACCTGAAGGGAGGGTGCAGCCTGGGGCAGGGGAAGGGGTCCATGCTGGGTGCATCCA-TGCAGAGATAATATGGGGTGATCATGATTCTTTCCATGAGGGTCACAATGAAGATCATCtttg--tttgttttt-tttttc--tttttttttcgagacagagtttcgctcttgtcacccaggctggagtgcaatggcacaatctcggctcactgccacctccgcctctcgggttcaagcgattctcctgcttcagcctcccgagtagctgggattgcaggtgtgcaccaccacgcccagctaattttgtatttttttttttagtagagacgaggtttctccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggtgtgagccaccgtgcccggccGATCATCTTTGTTTTATGCATTTCTGCATTTTCCAGTTTGCGTCCATGATCGTACCTccatttagaattggaacgtgtctgtggaaaccaatccacaaacacagacaaaaatgaggaagaacttacgggatttgctaaagttttaacgtacgggtgccgtatcaccagaatgccactcttacatgtgtacccaaaagaatttttaaaagggactcaaggccgggcgcggtgtttcacgcctgtgatcccagcactttgggaggccgagac-gggtggatcacgaggtcaggagatcgagaccatcctggctaacatggagaaaccctgtctctactaaaaatacaaaaaattagccgggcacggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggag-aatagcatgaacccgggaggcggaggttgcagtgagctgagggtgtgccactgccctccagcct-gggcgacag-agcgagactccatctc--aaaaaaaaaaaccaaaggagagtcaaacaaggactgtaggacagtgttcacagcagcaagtttgacggtagccaaaagatgg-aaaaaaaccaagggtctgttgatgg
s panTro5.chrX                 390945 1276 + 155549662 GTACAGGAACACTGTCTTCTCAAAGTGCCCTCAGCTTTTCTGGTGAGACTTTTGCCATCACAAGTCACGATACAATCTGGTTCGGCCATTGAGTCCGTTTTTCCCAAAGCGATTCAGACTCCTAGTTCCTTCACGTATTCATCAAAGCGTTTGCTGCCCACCAGGTGCCATCTTCCTTCCAGCTGTTGGATGGGGGCCAATTCCTTAGAAGGGC-------------------------------------AGGT--GTTGGCCCTGACCTGAAGGGAGGGTGCAGCCTGGGGCAGGGGAAGGGGTCCATGCTGGGTGCATCCATTGCAGAGATAATATGGGGTGATCATGATTCTTTCCATGAGGGTCACGATGAAGATCATCTTTGtttttgtttttgtttttcttttttttttttgagacagagtttcgctcttgtcgcccaggctggagtgcaatggcacaatctcagctcactgcaacctccgcctcccgggttcaagcgattctcctgcttcagcctcccgagtagctgggattgcaggcgtgcaccaccacgcccggctaattttgtatttttttttttagtacagacggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgagccaccgtgcccggccGATCATCTTTGTTTTATGCATTTCTGCATTTTCCAGTTTGCGTCCATGATCGTACCTCCATTTAGAATTGGAACATGTCTGTGGAAACCAACCCACAAACACAGACAAAAATGAGGAAGAACTTACGGGATTTGGTAAAGTTTTAACGTACGGGtgccgtatcaccagaatgccactcttacatgtgtacccaaaagaatttttaaaagggactcaaggccgggcgcggtggctcacgcctgtcatcccagcactttgggaggccgagacgggggggatcacgaggtcaggagatcgagaccagcctgaccaacacagtgaaacctcgtctctactaaaaatacaaaaaattagccgggcgcggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggag-aatagcatgaacccgggaggcaagggttgcagtgagctgagagtgtgccactgccctccagcct-gggcgacag-agcaagactctgtgtcgaaaaaaaaaaaaccaaaggagactcaaacaaggactgtaggacagtgttcgcagcagcaagtttgacggtagccaaaagatggaaaaaaaaccaagggtctgttgatgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 119639 1262 -    177848 GTACAGGAACACTGTCTTCTCAAAGTGCCCTCAGTTTTTCTGGTGAGACTTTTGCCATCACAAGTCACGATACAATCTGGTTCGGCCATTGAGTCCGTTTTTCCCAAAGGGATTCAGACTCCTAGTTCCTTCACATATTCATCAAAGCGTTTGCTGTCCACCAGGTGCCATCTTCCTTCCAGCTGTTGGATGGGGGCCAATTCCTTAGAAGGGC-------------------------------------GGGT--GTTGGCCCTGACCTGAAGGGAGGGTGCAGCCTGGGGCAGGGGAAGGGGTCCATGCTGGGTGCATCCATTGCAGAGATAATATGGGGTGATCATGATTCTTTCCATGAGGGTCACGATGAAGATCATCtttgtttttgttt---tttttc--ttttttttttgagacagagttttgctcttgtcgcccaggctggagtgcaatggcacaatctcagctcactgcaacctccgcctcctgggttcaagcgattctcctgcttcagcctcccgagtagctgggattgcaggcgtgcaccaccatgcccggctaattttgta-ttttttttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgtgcccggccGATCATCTTTGTTTTATGGATTTCTGCATTTTCCAGTTTGCGTCCATGATCGTACCTCCATTTAGAATTGGAACGTGTCTGTGGAAACCAATCCACAAACACAGACAAAAATGAGGAAGAACTTACGGGATTTGGTaaagttttaacgtacgggtgccgtatcaccagaatgccactcttacatctgtacccaaaagaatttttaaaagggactcaaggccgggcgcggtggctcacgcctgtcatcccagcactttgggaggcggagac-ggggggatcacgaggtcaggagatcgagaccagcctgaccaacacagtgaaacctcgtctctactaaaaatacaaaaaattagccgggcgtggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggag-aatggtgtgaacccgggaggcagaggttgcagtgagccgagagtgtgccactgccctccagcct-gggtgacag-agcaagactccatctc--gaaaaaaaa----aaaggagactcaaacaaggactgta-gacagtgttcgcagcagcaagtttgacggtagccaaaagatggaaaaaaaaccaagggtctgttgatgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       279058 1270 +    417917 GTACAGGAACACTGTCTTCTCAAAGTGCCCTCAGTTTTTCTGGTGAGACTTTTGCCATCACAAGTCACGATACAATCTGGTTCGGCCATTGAGTCCGTTTTTCCCAAAGCGATTCAGACTCCTACTTCCTTCACGTATTCATCAAAGCGTTTGCTGTCCACCAGGTGCCATCTTCCTTCCAGCTGTTGGATGGGGGCCAATTCCTTAGAAGGGCGGA----------------------------------AGGTGGGTTGGCCCTGACCTGAAGGGAGGGTGCAGCCTGGGGCA-GGGAAGGGGTTCATGCTGGGTGCATCCA-TGCAGAGATAATATGGGGTGATCATGATTCTTTCCATGAGGGTCACGATGAAGATCATCTTGGtttttt------tttttc--ttttttttttgagacacagtttcgctcttgttgcccaggctggagtgcaatggcacaatctcggctcactgcaacctccacctcccgggttcaagcgattctcctgcttgagcctcccgagtagctgggattgcaggcgtgcaccaccacgcctggctaattttgta-ttttttttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaaatgctgggatgacaggccttagccaccgtgcccggccGATcatctttgttttatgcatttctgcattttccagtttgcaCCCATGATCGTACCTCCATTTAGAATTGGAACGTGTCTGTGGAAACCAATCCACAAACACAGACAAAAATGAGGAAGAACTTACGGGATTTGTTAAAGTTTTAATGTACGGGtgccgtatcaccagaatgccactcttacatgtgtacccaaaagaatttttaaaaggtactcaaggccgggcgcggtggctcacgcctgtaatcccagcaccttgggaggccgagac-gggcggatcacgaggtcaggagatcgagaccatcctgggtaacacggtgaaacctcgtctgtactaaaaatacaaaaaattagccaggcgcggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaaatagcatgaacccgggaggcggaggttgcagtgagctgagatcgtgccgctgcactccagcctggggtgacagaagcaagatggcatctcgaaaaaaaaaaaaccaaaggagactcaaacaaggactgtaggacagtgttcacagcagcaagtttgacggtagccaaaagatgg-aaaaaaaccaagggtctg-tgatgg
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       351220  988 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=38274.000000
s hg38.chrX_KI270880v1_alt     208560 161 +    284869 ataaacgcaatgtggtccatccatgcagtggaatattatacacccacgaaaagg-aaagaagctagctctgacacaggctgcagtgtggatggacctggaagacatcacgctcagtgacagaagccagacacaaaaggccacgttgtgtaggattccgttat
s panPan2.chrUn_NW_014024190v1 120901 160 -    177848 ataaatgcaatgtggtccatccatgcagtggaatattatacacccatg-aaagg-aaggaagctagctctgacacaggctgcagtgtggatggacgtcaaggacatcaagctcagtgagagaagccagacacaaaaggccacgtcgtgtaggattccattat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       280328 161 +    417917 ataaatgcaatgtggtccatccatgcagtggaacattatacacccatgaaaaggcggggaagctagctctgacacaggctgcagtgtggatggacctggaagacatcacactcagtgacagaagcc-gacacaaaaggccacgttgtgtaggactccattat
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e panTro5.chrX                 392221   0 + 155549662 C
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=85525.000000
s hg38.chrX_KI270880v1_alt     208721 159 +    284869 ataaatgcaatgtggtccatccatgcagtggaatattatacacccatgaaaaggaaggaagctaactctgagacaggctgcagtgtgggtggacctcaaggacatcacgctcagtgagagaagccagacacaaaaggccatatcacgcaggattccatt
s panTro5.chrX                 392221 159 + 155549662 ataaatgcaatgtggtccatccatgcagtggagtattatacacccatgaaaaggaaggaagctaactgtgagacaggctgcagtgtggatggacgtcaaggacatcacgctcagtgagagaagccagacacaaaaggccatatcgtgcaggattccatt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 121061 159 -    177848 ataaatgcaatgtggtccatccatgcagtggaatattatacacccatgaaaaggaaggaagctaactctgagacaggctacagtgtggatggacctcaaggacatcacgctcagtgagagaagccagacacaaaaggccacgtcgtgtaggattccatt
i panPan2.chrUn_NW_014024190v1 C 0 M 1951
s gorGor5.CYUI01015925v1       280489 159 +    417917 ataaatgcaatgtggtccatccatgcagtggaatattatacacccatgaaaaggaaggaagctaactctgacacaggctgcagtgtggatggacttcaaggacatcacgctcagtgagagaagccagacacaaaaggccatatcgtgcaggattccatt
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I

a score=138343.000000
s hg38.chrX_KI270880v1_alt     208880 548 +    284869 tatataaaatgcccagaacaggcaaacccacagagacagaaagtggatttgtggttaccaggggccggggaggggctggggactcactgctgcctgcatacagggtctctttttggagtgataaaaatgttctggaactaaatagaggcgGTGATTGcagagcattaaaaatcattcaaatggggttattatttttttttttttttgagacggagtttcactcttgttgcccaggctggagtgcaggggagcgatctgagctcactgcaacctccacctcccgagttgaagtgattttcctgcctcagcctccctagtagctgggattagaggcgcccaccaccacacccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccgggctggtctcgaactcctgacctcagatgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccactcctggcctcagatggggaattttatgctatgtcaattatatctaaATAAAAAAC-TTAAAGAAAGAA
s panTro5.chrX                 392380 544 + 155549662 tatataaaatgtccagaacaggcaaacccacatagacagaaagtggatttgtggttgccaggggccggggaggggctggggattcactgctgcctgcatacagggtctctttttggagtgataaaaatgttctgcaactaaatagacgcggtgatggcagagcattaaaaatcattcaaatgggatt----ttttttttcttttttgagacggagtttcactcttgttgcccaggctggagtgcaggggagcgctctgagctcactgcaacctccacttcccgagttgaagtgattttcctgcctcagcctccctagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactgctgacctcaggggatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccactcctggcctcagatggggaattgtatgctatgtgaattatatctaaataaaaaaC-TTAaagaaagaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       280648 547 +    417917 tatataaaatgtccagaacaggcaaacccacagagacagaaagtggatttgtggttgccaggggccggggaggggct-gggactcactgctgcctgcatacagggtctctttttggagtgataaaaatgttctggaagtaaatagaggtggtgattgcagagcattaaacatcattcaaatgggattatt-attatgtttttttttgagatggagtttcactcttgttgcccaggctggagtgcaggggagcgatctgagctcactgcaacctccacctcccgagttgaagtgattttcctgcctcagcctccctagtagctgggattacaggcgcccgccaccacacccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtattgaactcctgacctcaggtgatctgcctgcctcggcctcccaaagtgctgggattataggcatgagccgccactcctggcttcagatggggaattttatgctatgtgaattatatctaaataaaaaaAGTTAaagaaagaa
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e cerAty1.NW_012001098v1       239877 4938 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 121220 1951 -    177848 M

a score=3058.000000
s hg38.chrX_KI270880v1_alt     209428 7 +    284869 aaggaac
s panTro5.chrX                 392924 7 + 155549662 aaggaac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       281195 7 +    417917 aaggaat
i gorGor5.CYUI01015925v1       C 0 I 501
s cerAty1.NW_012001098v1       244815 7 -   1025902 aaggaag
i cerAty1.NW_012001098v1       I 4938 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       349575 15427 +  25972781 I
e panPan2.chrUn_NW_014024190v1 121220 1951 -    177848 M

a score=14146.000000
s hg38.chrX_KI270880v1_alt     209435 31 +    284869 gaaggaaggaaggaaagaaggaaggaaggaa
s panTro5.chrX                 392931 20 + 155549662 gaaggaaggaatg-----------gagggac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       281703 31 +    417917 gaaggaaggaaggaaggagagagggagggag
i gorGor5.CYUI01015925v1       I 501 C 0
s macNem1.NW_012017243v1       365002 23 +  25972781 --------gaaggaaggaaggaaggaaggaa
i macNem1.NW_012017243v1       I 15427 C 0
s cerAty1.NW_012001098v1       244822 31 -   1025902 gaaggaaggaaggaaggaaggaaggaaggaa
i cerAty1.NW_012001098v1       C 0 C 0
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e panPan2.chrUn_NW_014024190v1 121220 1951 -    177848 M

a score=1139.000000
s hg38.chrX_KI270880v1_alt     209466 2 +    284869 ag
s panTro5.chrX                 392951 2 + 155549662 ag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123224 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1 M 1951 C 0
s gorGor5.CYUI01015925v1       281734 2 +    417917 ga
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365025 2 +  25972781 gg
i macNem1.NW_012017243v1       C 0 I 5
s cerAty1.NW_012001098v1       244853 2 -   1025902 gg
i cerAty1.NW_012001098v1       C 0 I 5
e manLeu1.NW_012108508v1       199837 9079 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     184599 5912 -    811265 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I

a score=235378.000000
s hg38.chrX_KI270880v1_alt     209468 115 +    284869 aggaaggaaggaaggaagAGAC-AAAAATAAACCAAAATAGGGAATGTCCACCTTGGAGGCTGAT---------GTTCACGTCCACAGGTGCTGCCTCCCCAGACACTTACTCAACTCTGAAGCC
s panTro5.chrX                 392953 111 + 155549662 aggaaggaaggaag----AGAC-AAAAATAAACCAAAATAGGGAATGTCCACCTTGGAGGTTGAT---------GTTCACGTCCACAGGTCGTGCCTCTCCAGACACTTACTCAACTCTGAAGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123226 116 -    177848 AGGAAGGAAGGAAGGAAGAGACAAAAAATAAACCAAAATAGGGAATGTCCACCTTGGAGGTTGAT---------GTTCACGTCCACAGGTCGTGCCTCTCCAGACACTTACTCAACTCTGAAGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281736 114 +    417917 aggaaggaaggaaggaagAGAC--AAAGTAAACCCAAATAGGGAATGTCCACCTTGGAGGCTGAT---------GTTCACGTCCACAGGTCCTGCCTCCCCAGACACTTACTCAACTCTGAAGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365032 122 +  25972781 aggaaggaaggaag-gCGGAGC--AAAATAAACCGAAATAGGGGCCGTCCACCTTGGAGGCTGATCTGACAGAGGTTCCCGTCCACAGCTCCTGCCTATCCAGAGACTTCCTCAACTCTGAAGCC
i macNem1.NW_012017243v1       I 5 I 331
s cerAty1.NW_012001098v1       244860 123 -   1025902 aggaaggaaggaag-gGGAGAC-AAAAATAAACCGAAATAGGGGCCGTCCACCTTGGAGGCTGATCTGGCAGAGGTTCCCGTCCACAGGTCCTGCCTACCCAGAGACTTCCTCAACTCTGAAGCC
i cerAty1.NW_012001098v1       I 5 I 350
s chlSab2.chrUn_KE147541v1     190511 123 -    811265 aggaaggaaggaag-gaGAGAC-AAAAATAAACCACAATAGGGGCCGTCCACCTTGGAGGCTGATCTGGCAGAGGTTCCCGTCCACAGCTCCTGCCTACCCAGAGACTTCCTCAACTCTGAAGCC
i chlSab2.chrUn_KE147541v1     I 5912 I 326
s manLeu1.NW_012108508v1       208916 123 -    350446 aggaaggaaggaag-gaGAGAC-AAAAATAAACCGAAATAGGGGCCGTCTACCTTGGAGGCTGATCTGGCAGAGGTTCCCGTCCACAAGTCCTGCCTATCCAGAGACTTCCTCAACTCTGAAGCC
i manLeu1.NW_012108508v1       I 9079 I 343
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I

a score=5072.000000
s hg38.chrX_KI270880v1_alt     209583 11 +    284869 TTCACCGGTAA
s panTro5.chrX                 393064 11 + 155549662 TTCACCGGGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123342 11 -    177848 TTCACCGGGAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281850 11 +    417917 TTCACTGGTAA
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       209039 343 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     190634 326 -    811265 I
e cerAty1.NW_012001098v1       244983 350 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       365154 331 +  25972781 I

a score=4332.000000
s hg38.chrX_KI270880v1_alt     209594 5 +    284869 GACAG
s panTro5.chrX                 393075 5 + 155549662 GACAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123353 5 -    177848 GACAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281861 5 +    417917 GACAG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     190960 5 -    811265 GACGG
i chlSab2.chrUn_KE147541v1     I 326 C 0
e manLeu1.NW_012108508v1       209039 343 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       244983 350 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I
e macNem1.NW_012017243v1       365154 331 +  25972781 I

a score=16481.000000
s hg38.chrX_KI270880v1_alt     209599 12 +    284869 CAGGGG--TGGGGG
s panTro5.chrX                 393080 12 + 155549662 CAGGGG--TGGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123358 14 -    177848 CAGGGGGTGGGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281866 12 +    417917 CAGGGG--TGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365485 12 +  25972781 CAGGAG--TGGGGC
i macNem1.NW_012017243v1       I 331 C 0
s chlSab2.chrUn_KE147541v1     190965 12 -    811265 CAGGAG--TGGGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       209382 12 -    350446 CAGGAG--TGGGGC
i manLeu1.NW_012108508v1       I 343 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       244983 350 -   1025902 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I

a score=28214.000000
s hg38.chrX_KI270880v1_alt     209611 12 +    284869 GACGGCGGAGTC
s panTro5.chrX                 393092 12 + 155549662 GACGGCAGAGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123372 12 -    177848 GACGGCAGAGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281878 12 +    417917 GACGGCGGAGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365497 12 +  25972781 GACAGCGGAGTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       245333 12 -   1025902 GACGGCCGAGTC
i cerAty1.NW_012001098v1       I 350 C 0
s chlSab2.chrUn_KE147541v1     190977 12 -    811265 GACGGCGGAGTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       209394 12 -    350446 GACGGCCGAGTC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e colAng1.NW_012115411v1       351220 988 +   1230721 I

a score=118844.000000
s hg38.chrX_KI270880v1_alt     209623 42 +    284869 TTTGATCAGAAGAGGGCTCAACAGGCAAGGGGACCTGGTCCT
s panTro5.chrX                 393104 42 + 155549662 TTTGATCAGAAGAGGGCTCAACAGGCAAGGAGACCTGTTCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123384 42 -    177848 TTTGATCAGAAGAGGGCTCAACAGGCAAGGAGACCTGTTCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281890 41 +    417917 TTT-ATCAGAAGAGGGCTCAACAGGCAAGGGGACCTGGTCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365509 42 +  25972781 TTTGATCAGAAGAAGGCTGAACGGGCCGGGGGACCTGGTCCT
i macNem1.NW_012017243v1       C 0 I 30
s cerAty1.NW_012001098v1       245345 42 -   1025902 TTTGATCAGAAGAAGGCTGAACAGGCCAGGGGACCTGGTCCT
i cerAty1.NW_012001098v1       C 0 I 161
s chlSab2.chrUn_KE147541v1     190989 42 -    811265 TTCGATCAGAAGAAGGTTGAACGGGCCAGGGGACCTGGTCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       209406 42 -    350446 TTTGATCAGAAGAAGGCTGAACGGGCCAGGGGACCTGGTCCT
i manLeu1.NW_012108508v1       C 0 I 211
s colAng1.NW_012115411v1       352208 42 +   1230721 TTTGATCAGAAGAGGGCTGAACGGGCCAGGAGACCTGGTCCT
i colAng1.NW_012115411v1       I 988 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I

a score=2260.000000
s hg38.chrX_KI270880v1_alt     209665 2 +    284869 TG
s panTro5.chrX                 393146 2 + 155549662 TG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123426 2 -    177848 TG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281931 2 +    417917 TG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     191031 1 -    811265 -G
i chlSab2.chrUn_KE147541v1     C 0 I 1
s colAng1.NW_012115411v1       352250 2 +   1230721 TG
i colAng1.NW_012115411v1       C 0 I 159
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e macNem1.NW_012017243v1       365551 30 +  25972781 I

a score=15746.000000
s hg38.chrX_KI270880v1_alt     209667 28 +    284869 CAAAAAACTCGGACTGCAGTACGGG-CCG
s panTro5.chrX                 393148 29 + 155549662 CAAGAAACTGGGACTGCAGTACGGGGCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123428 29 -    177848 CAAGAAACTGGGACTGCAGTACGGGGCCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281933 28 +    417917 CAAAAACCTTGGACTGCAGTACAGG-CCG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     191033 28 -    811265 -CCAAAGCTGTGACTGTGGTACGGGCCCA
i chlSab2.chrUn_KE147541v1     I 1 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e colAng1.NW_012115411v1       352252 159 +   1230721 I
e macNem1.NW_012017243v1       365551 30 +  25972781 I

a score=34673.000000
s hg38.chrX_KI270880v1_alt     209695 28 +    284869 TGGGATCGGCCTCGTGTGTGGCCTGCAC
s panTro5.chrX                 393177 28 + 155549662 TGGGATCGGCCTCGTGTGTGGCCCGCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123457 28 -    177848 TGGGATCGGCCTCGTGTGTGGCCCGCAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281961 28 +    417917 TGGGATGGGCCTCGTGTGTGGCCCGCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365581 28 +  25972781 TGGGATCGGCCTCTTGTGTGGCCTGCAC
i macNem1.NW_012017243v1       I 30 I 117
s chlSab2.chrUn_KE147541v1     191061 28 -    811265 TGGGATCGGCCTCTTGTGTGGCCTTCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e colAng1.NW_012115411v1       352252 159 +   1230721 I

a score=11126.000000
s hg38.chrX_KI270880v1_alt     209723 13 +    284869 CCTTTTCCCCGTC
s panTro5.chrX                 393205 13 + 155549662 CCTTTTCCCCGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123485 13 -    177848 CCTTTTCCCCGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       281989 13 +    417917 CCTTTTCCCCGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     191089 13 -    811265 GCTTTTCCCTGTC
i chlSab2.chrUn_KE147541v1     C 0 I 102
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e colAng1.NW_012115411v1       352252 159 +   1230721 I
e macNem1.NW_012017243v1       365609 117 +  25972781 I

a score=3840.000000
s hg38.chrX_KI270880v1_alt     209736 16 +    284869 AGGGAAGGACTGTTTG
s panTro5.chrX                 393218 16 + 155549662 AGGGAAGGACTGTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123498 16 -    177848 AGGGAAGGACTGTTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282002  5 +    417917 AGGGA-----------
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             283663 4291 +  11138919 I
e chlSab2.chrUn_KE147541v1     191102 102 -    811265 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e colAng1.NW_012115411v1       352252 159 +   1230721 I
e macNem1.NW_012017243v1       365609 117 +  25972781 I

a score=14370.000000
s hg38.chrX_KI270880v1_alt     209752 39 +    284869 TTTGTTTTCTGCATCATCATCCATCACGCGGCATTGTCA
s panTro5.chrX                 393234 36 + 155549662 TTTGTTTTCTGCATCATC---CATCACGCGGCATTGTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123514 36 -    177848 TTTGTTTTCTGCATCATC---CATCACGCGGCATTGTCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             287954 35 +  11138919 TTTGTTTTCTCCGTCATC---CATCACGC-GTGGTGTGA
i otoGar3.GL873584             I 4291 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191102 102 -    811265 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e colAng1.NW_012115411v1       352252 159 +   1230721 I
e macNem1.NW_012017243v1       365609 117 +  25972781 I
e gorGor5.CYUI01015925v1       282007  0 +    417917 C

a score=16072.000000
s hg38.chrX_KI270880v1_alt     209791 24 +    284869 GCCCTGACAGCTCAGGAGGGCCTT-
s panTro5.chrX                 393270 24 + 155549662 GCCCTGACAGCTCGGGACGGCCTT-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123550 24 -    177848 GCCCTGACAGCTCAGGACGGCCTT-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282007 16 +    417917 --------AGCTCAGGAGGGCCTT-
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       352411 24 +   1230721 GCCCTGACAAGTCAGGCGGGACCT-
i colAng1.NW_012115411v1       I 159 I 1
s otoGar3.GL873584             287989 24 +  11138919 GCCCTGACAGC-CGGGAGGGGCGTC
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191102 102 -    811265 I
e cerAty1.NW_012001098v1       245387 161 -   1025902 I
e macNem1.NW_012017243v1       365609 117 +  25972781 I

a score=85941.000000
s hg38.chrX_KI270880v1_alt     209815 40 +    284869 TTTCAACATCTCTTTATCTGACAGCGTTCATGCATCATAA
s panTro5.chrX                 393294 40 + 155549662 TTTCAACATCTCTTTATGTGACAGCGTTCATGCATCATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123574 40 -    177848 TTTCAACATCTCTTTATGTGACAGCGTTCATGCATCATAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282023 40 +    417917 TTTCAACGTCTCTTTATCTGACAGCTTTCATGCATCCTAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365726 39 +  25972781 TTTCAACAGTTCTTTGTCTGACAGC-TTCACGCATCCGAC
i macNem1.NW_012017243v1       I 117 C 0
s cerAty1.NW_012001098v1       245548 39 -   1025902 TTTCAACAGTTCTTTGTCTGACAGC-TTCACGCATCCGAC
i cerAty1.NW_012001098v1       I 161 C 0
s chlSab2.chrUn_KE147541v1     191204 39 -    811265 TTTCAACACTTCTTTGTCTGACAGC-TTCACGCATCCGAC
i chlSab2.chrUn_KE147541v1     I 102 C 0
s colAng1.NW_012115411v1       352436 39 +   1230721 TTCCAACACTTCTTTATCTGAGAGC-TTCATGCATCCGAC
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584             288013 39 +  11138919 TTCCAACTGGTCTTTGTCTGACAGC-TCCACGCACCTTAG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       209448 211 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=710047.000000
s hg38.chrX_KI270880v1_alt     209855 257 +    284869 GACAGCAAACAGAATTAGATCAAAGTCTACGAGGCCGTGTCGGC-TCGGTGAGGA--AGGCGAGCCAGCTTGTATCTTCATAAGAGA-GGTGACAGTTGGTTTGAACTGGCGTTGGGCCGCAGAG--GGCTGGGGAGTGCAGAGAGGACTGGGGACGAGGGCTGGGATTCTTGGCTTTCCAGGAGGAACAGCCCTGCTCCC--TTCTGTCCACTTGCCACCTTCCTGGGTCTCTTTCCCCAGTAGGTGTGGTTCCTTCTGTCCTG
s panTro5.chrX                 393334 257 + 155549662 GACAGCAAACAGAATTAGATCAAAGTCTACGAGGCCCTGTCGGC-TCGGTGGGGA--AGGCGAGCCAGCTTGTATCTTCATAAGAGA-GGTGACAGTTGGTTTCAACTGGCGTTGGGCCGCGGAG--GGCTGGGGAGTGCAGAGAGGACTGGGGACGAGGGCTGGGGTTCCTGGCTTTCCAGGAGGAACAGCCCTGCTCCC--TTCTGTCCACGTGTCTCCTTCCTGGGTCTCTTTCCCCAGTAGCTGTGGTTGCTTGTGTCCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123614 257 -    177848 GACAGCAAACAGAATTAGATCAAAGTCTACGAGGCCCTGTCGGC-TCGGTGGGGA--AGGCGAGCCAGCTTGTATCTTCATAAGAGA-GGTGACAGTTGGTTTGAACTGGCGTTGGGCCGCGGAG--GGCTGGGGAGTGCAGAGAGGACTGGGGACGAGGGCTGGGGTTCTTGGCTTTCCAGGAGGAACAGCCCTGCTCCC--TTCTGTCCACGTGTCTCCTTCCTGGGTCTCTTTCCCCAGTAGGTGTGGTTGCTTGTGTCCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282063 257 +    417917 GACAGCAAGCAGAATTAGATCAAAGTCTACGAGGCCCTGTCGGCTTCGGTGAGGA--AGGCGAGCCAGCTTGTATCTTCATAAGAGAGGGTGACAGTTGGTTTGAACTGGCGTTGGGCCACGGAG--GGCTGGGGAGTGCAGAGAGGACT-GGGACGAGGGCTGGGATTCTTGGCTTTCCAGGA-GAACAGCCCTGCTCCC--TTCTGTCCACTTGCCTCCTTCCTGGGTCTCTTTCCCCAGTAGGTGTGGTTCCTTGTGTCCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       365765 259 +  25972781 GACAGCAAACAGAATGAGATCAAAGTCGACCAGGCCCTGTCGGC-CGGGCGAGGT--AGGCGAGCCGGCTCGTGTCTTCATCCGGGA-GGTGACAGCTGGTGTTCACTGGCGTGGGGCGGCAGAGAgggttggggagtgcgcaggggactggggatgagggctgggATTCTTGTCTTTCCAGGAGGCACAGCCCTGCTTCC--TTCTGTGCACCTGCCTCCTTCCTGGGTCTCTTTCTCCAGTAGCTGTGGTTCCTTCTGTCCTG
i macNem1.NW_012017243v1       C 0 I 99
s cerAty1.NW_012001098v1       245587 259 -   1025902 GACAGCAAACAGAATGAGATCAAAGTCGACCAGGCCCTGTCGGC-CGGGCGAGGT--AGGCGAGCCGGCTCGTGTCTTCATCGGGGA-GGTGACAGTTGGTGTTCACCGGCGTGGGGCGGCAGAGAGGGCTGGGGAGTGTGCAGGGGACTCGGGACGAGGGCTGGGATTCTTGTCTTTGCAGGAGGCACAGCCCTGCTTCC--TTCTGCGCACCTGCCTCCTTCCTGGGTCTCTTTCTCCAGTAGCTGTGGTTCCTTCTGTCCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     191243 256 -    811265 GACAGCAAACAGGAGGAGATCAAAGTCGACCAGGCCCTGTCGGC-TGGGCGAGGTAGAGGCGAGCTGGCTTGTGTCTTCATCGGGGA-GGTGACAGTTGGTGTTCACTGGCGTGGGGCGGCAGAGAGGGCTGGGGAATGCGGAGAGGACC-----CGAGGGCTGGGATTCTTCTCTTTCCAGGAGGCACGGCCCTGCTTCC--TTCTGCGCACCTGCCTCCTTCCTGGGTCCCTTTCTCCAGTAGCTGTGGTTCCTTCCGTCCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       209659 259 -    350446 GACAGCAAACAGAATGAGATCAAAGTCGACCAGGCCCTGTCGGC-CGGGCGAGGT--AGGCGAGCCGGCTCGTGTGTTCATCGGGGA-GGTGACAGTTGCTGTTGACTGGCGTGGGGCGGCAGAGACGGctggggagtgcacaggggactggggatgagggctgggATTCTTGTCTTTGCAGGAGGCACAGCCCTGCTTCC--TTCTGCGCACCTGCCTCCTTCCTGGGTCTGTTTCCCCAGTAGCTGTGGTTCCTTCTGTCCTG
i manLeu1.NW_012108508v1       I 211 C 0
s colAng1.NW_012115411v1       352475 240 +   1230721 GACAGCAAACAGAATGAGATCAACGTCGACGAGGCCCTGTGGGC-TGGGCGAGGT--AGGCGAGCCAGCTTGTGTCTTCATCGGGGA-GGTGACAGTCGGTGTGCAGTGGCGCGGGGCGGCAGAGGGGGCTGGGGA-------------------CCAGGGCTGGGGTTCTGGTCCTTCCAGGAGGCACAGCCCTGCTTCC--TTCTGGGCACCTGCCTCCTTCCTGGGTCCGTTTCCCCAGGAGCTGCGGTTCCTTCTGTCCTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             288052 216 +  11138919 AGTAGCAGATAGAATTAGATCAAAGGGAGGCAGGTGCAGTCGGC-CTGGTGAGGT--GGCCCAGCCCGCTGGTGTCTTC---TAGGA-GGTGACAGTTGGCTTTGGCTGGCGCTGGGTTG-GAAG--AGCTGGGGTGTGCTCAG----------------------------CCCCTTGCTGGGGG---------GCTCTCAGTTCTCCACATCTGTGTCCTCCCTGGGTCGTCCCCCTCATCTG-TGCGGTT-CTTATACCTTG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=206800.000000
s hg38.chrX_KI270880v1_alt     210112 88 +    284869 CAGGCCACAGTGCAACCCAGGGCTTCGGAGCACGCGTTGATAGTCCTGATTTTTGTCTGACATCTTTGCAGAAAACGGAGAGCATCCC
s panTro5.chrX                 393591 88 + 155549662 CACGCCACAGTGCAACCCAGGGCTTCGGAGCACGCGTTGATAGTCCTGACTTTTGTCTGACATCTATGCAGAAAACGGAGAGCATCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123871 88 -    177848 CACGCCACAGTGCAGCCCAGGGCTTCGGAGCACGCGTTGATAGTCCTGACTTTTGTCTGACATCTATGCAGAAAACGGAGAGCATCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282320 88 +    417917 CAGGCCACAGTGCGACCCAGGGCTTCGGAGCACGCGTTGATAGTCCTGACTTTTGTCTGACATCTATGCAGAAAACGGAGAGCATCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       245846 88 -   1025902 CAGGCCACAGCGCGACCCAGGGCCTCAGGGTACCTGTTACTCATCCTGACTTTTGTCTAACGTCCGTGCAGAACACGGAGACCATCCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     191499 88 -    811265 CAGGCCACAGTGCGACCCAGGGCCTCAGGGTACCTGTTACTAATCCTGACTTTTGTCTAACGTCTGTGCAGAACACGGAGACCATCCC
i chlSab2.chrUn_KE147541v1     C 0 I 425
s manLeu1.NW_012108508v1       209918 88 -    350446 CAGGCCACAGTGCGACCCAGGGCCTCAGGGTACCTGTTACTAATCCTGACTTTTGTCTAACGTCCGTGCAGAACACGGAGACCATCCC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       352715 88 +   1230721 GAGGCCACAGTGCGACCCGGGGCCTCAGGGCACCTGTCGATAATCCTGACTTTTGTCTGACGTCTGTGCAGAACGCGGAGACCATCCC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             288268 80 +  11138919 -------AAGTGCAGGCTGGGTCCTGGGAGTGCAAGCTCATAATCCTGACGTGTGTCTAACACCTACGAAG-ACACGGAGAAAGCTCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e macNem1.NW_012017243v1       366024 99 +  25972781 I

a score=-1120.000000
s hg38.chrX_KI270880v1_alt     210200 1 +    284869 -C
s panTro5.chrX                 393679 1 + 155549662 -C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123959 1 -    177848 -C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282408 1 +    417917 -C
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       245934 1 -   1025902 -C
i cerAty1.NW_012001098v1       C 0 I 1025
s manLeu1.NW_012108508v1       210006 1 -    350446 -C
i manLeu1.NW_012108508v1       C 0 I 30
s colAng1.NW_012115411v1       352803 1 +   1230721 -C
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             288348 1 +  11138919 G-
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e macNem1.NW_012017243v1       366024 99 +  25972781 I

a score=15026.000000
s hg38.chrX_KI270880v1_alt     210201 17 +    284869 TCAGGCAATGGGATACT
s panTro5.chrX                 393680 17 + 155549662 TCAGACAATGGGATACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123960 17 -    177848 TCAGACAATGGGATACT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282409 17 +    417917 TCAGACAATGGGATACT
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       352804 17 +   1230721 TGGGACAATGGGCCGTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             288349 17 +  11138919 GGAAACAATGGGGTACT
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       210007 30 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e macNem1.NW_012017243v1       366024 99 +  25972781 I

a score=29929.000000
s hg38.chrX_KI270880v1_alt     210218 15 +    284869 GTCCCTCTGGCGCCG
s panTro5.chrX                 393697 15 + 155549662 GTCCCTCTGGCGCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123977 15 -    177848 GTCCCTCTGGTGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282426 15 +    417917 GTCCCTCAGGTGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       366123 15 +  25972781 GTCCCTCTGGCGCTG
i macNem1.NW_012017243v1       I 99 C 0
s manLeu1.NW_012108508v1       210037 15 -    350446 GTCCCTCTGGCACTG
i manLeu1.NW_012108508v1       I 30 C 0
s colAng1.NW_012115411v1       352821 15 +   1230721 GTCCCTCTGGCGCTG
i colAng1.NW_012115411v1       C 0 I 174
s otoGar3.GL873584             288366 14 +  11138919 -GTCGTCTGGCTCTG
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I

a score=22479.000000
s hg38.chrX_KI270880v1_alt     210233 20 +    284869 ACCACACTCTGCGACTTGTC-
s panTro5.chrX                 393712 20 + 155549662 ACCACACTCTGTGACTTGTC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 123992 20 -    177848 ACCACGCTCTGCGACTTTTC-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282441 20 +    417917 ACCACACTCTGCGACTTGTC-
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       366138 20 +  25972781 ACCACACTCTGCGACGTGTC-
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       210052 20 -    350446 ACCACACTCTGCGACGTGTC-
i manLeu1.NW_012108508v1       C 0 I 4108
s otoGar3.GL873584             288380 20 +  11138919 GCTGGATTCTG-GCCATCTCC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       352836 174 +   1230721 I

a score=48151.000000
s hg38.chrX_KI270880v1_alt     210253 69 +    284869 ATGATGGGTAACAGGTGTGTCTGCAGCTTGACCTTGCAGCTGGGGCAGCC-------------------GC--AGAGAG----GTGCAGGAAGG-----
s panTro5.chrX                 393732 71 + 155549662 TCGATGGATGACAGGTGTCTCTGCAGCTTGACCTTGCACCGGGGGCAGCC-------------------GCAGAGAGAG----GTGGAGGAAGG-----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 124012 69 -    177848 GTGATGGATGACAGGTGTGTCTGCAGCTTGACCTTGCACTGGGGGCAGCC-------------------GC--AGAGAG----GTGGAGGAAGG-----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282461 69 +    417917 GTGATGGATAACAGGTGTGTCTGCAGCTTGACCTTGCACCTGAGGCAGCC-------------------GC--AGAGAG----GTGGAGGAAGG-----
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       366158 69 +  25972781 CGGATGGATAACGGGTCTCTCCTCAGCCTGACCTTGCCCCCGGGGCAGCC-------------------AC--AGACAG----CTGGAGGAAGG-----
i macNem1.NW_012017243v1       C 0 I 11142
s otoGar3.GL873584             288400 97 +  11138919 GTGATGGACAGCAGGCTCTCCAGCCACTCAGCCTTCTCCCAGGCAGAGCTTGCTCTTGTTAAGGACAGAAC--AGAGAGAACAGCCAAGAAAGGTGATG
i otoGar3.GL873584             C 0 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       352836 174 +   1230721 I

a score=27225.000000
s hg38.chrX_KI270880v1_alt     210322 72 +    284869 AGAGCGATGGGAGAGAAAACGAAGGTGTGCTCAGTGGCGG--AGAGAAATTCCAAAATTtcactggagcaagtt
s panTro5.chrX                 393803 72 + 155549662 AGAGTGATGGGAGAGAACACGAAGGTGTGCTGAGTGGCGG--AGAGAGATTCCAAAATTTCACTGGAGCAAGTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 124081 72 -    177848 AGAGTGATGGGAGAGAACACGAAGGTGTGCTGAGTGGCGG--AGAGAGATTCCAAAATTTCACTGGAGCAACTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282530 35 +    417917 A-------------------------------------GG--AGAGGAATTCCAAAATTTCACTGGAGCAAGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             288497 73 +  11138919 TGTGTGGGGGTGGAGAAAGCCCAAGTATGGGGAGTAGAGGGCAGAGAAATTCC-AAGTTCCGCTTTACCCAGTT
i otoGar3.GL873584             C 0 I 2179
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       352836 174 +   1230721 I
e macNem1.NW_012017243v1       366227 11142 +  25972781 I

a score=5784.000000
s hg38.chrX_KI270880v1_alt     210394 10 +    284869 tagcccagct
s panTro5.chrX                 393875 10 + 155549662 TAGCCCAGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 124153 10 -    177848 TAGCCCAGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282565 10 +    417917 TAGCCCAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             288570 2179 +  11138919 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       352836 174 +   1230721 I
e macNem1.NW_012017243v1       366227 11142 +  25972781 I

a score=57165.000000
s hg38.chrX_KI270880v1_alt     210404 75 +    284869 ggctgctggagaaac--gcttctcctggatactgtggagactatatGGAGAAtgaattccttccttcctccctccct
s panTro5.chrX                 393885 75 + 155549662 GGCTGCTGGAGAAAC--AGTTCTCCTGGATATTGTGGAGACTATATGGAGAATGAAttccttccttcctccctccct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 124163 75 -    177848 GGCTGCTGGAGAAAC--GGTTCTCCTGGATATTGTGGAGACTATATGGAGAATGAAttccttccttcctgcctccct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       282575 76 +    417917 GGCTGCTGGAGAAAACGGTTTCTCCTGGATATT-TGGAGACTATATGGAGAATGAAttccttccttccttccttcct
i gorGor5.CYUI01015925v1       C 0 I 3360
s colAng1.NW_012115411v1       353010 75 +   1230721 GGCTGCTGGAGAAAT--GGTTCTCCTGGGTATTCTGGAGGCTGCATGGAGAATTAAttccttccttccttccttttt
i colAng1.NW_012115411v1       I 174 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             288570 2179 +  11138919 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e macNem1.NW_012017243v1       366227 11142 +  25972781 I

a score=600.000000
s hg38.chrX_KI270880v1_alt     210479 1 +    284869 c
s panTro5.chrX                 393960 1 + 155549662 c
i panTro5.chrX                 C 0 I 5553
s panPan2.chrUn_NW_014024190v1 124238 1 -    177848 c
i panPan2.chrUn_NW_014024190v1 C 0 I 2948
s colAng1.NW_012115411v1       353085 1 +   1230721 c
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             288570 2179 +  11138919 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I

a score=1492.000000
s hg38.chrX_KI270880v1_alt     210480 16 +    284869 tttctttctttctttc
s colAng1.NW_012115411v1       353086 16 +   1230721 tttctttctttctttc
i colAng1.NW_012115411v1       C 0 M 4194
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             288570 2179 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     210496 980 +    284869 cttctttcttcctttctttctttccttcttctttttctttcttctttctttctttcttatctctctccttccttattccttttcttccttcccttccctcccttccctttccttctttccttccttcccttccttccttcctctttccttcctttctctttttctttcttctctctctctttccttccttattcctcatcttccttcctctttcctttctttctctttttctttcttctctctctttccttccttattcctcatcttccttcctctttcctttctttctctttttctttcttctctctctttccttccttattcctcatcttcctttctctttcctttctttctctttttctttcttctctctctttccttccttattcctcatcttccttcctctttcctttctttctctttttctttcttctctctctttcCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCC
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             288570 2179 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=2506.000000
s hg38.chrX_KI270880v1_alt     211476 77 +    284869 TTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCCTTCCTCTTTCCTTCCTTTCTCTTTT
s otoGar3.GL873584             290749 77 +  11138919 TTCTGCAGTCTTTGCCTTTTCCTGTCATTCTCTCTTCTCCCTTCATTCTCTCTTCTCCCTTCATTCTCTGCTCTTTT
i otoGar3.GL873584             I 2179 I 3809
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     211553 651 +    284869 TCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTCCTTTCTCTTTTTCTTTCTTCTCTCTCTttccttccttattccttttcttccttccctccctccctccatccttccttcctttttctcttctttccttctcttctttcttctttctttctttctttctttctttctttctttctttctttcctttctctcttcctccctccctccctcccttccttcccttccttccttccctcttccttcccttccctcccttccctttccttctttccttctttctcttccttcccttccctttccttccccttccttccttctttcgttccttcatttcttccttccttctttccctccctcccttccttccttctttccttccttccCTCTGTCTCTGTCCTTTCTTCTCTCTCtttctctgttttttttt
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     191587 425 -    811265 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=10863.000000
s hg38.chrX_KI270880v1_alt     212204 139 +    284869 tttttttttttggagacagggtctcactctgtcacccagactggagtgcagtggtgcaatcacagctcactgcagcctcaacctcctgggctctagcaatcctcccacctcagcctcctgagtagctgggactacagga
s chlSab2.chrUn_KE147541v1     192012 139 -    811265 ttttttgttttagagacagggtctcactgtatcgcccagactggagtgcactggtacaaccgcagctcactgcagcctccacctcctggactccagcaatcctcccgcctcagcctcccgagtagctgggactataggt
i chlSab2.chrUn_KE147541v1     I 425 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e cerAty1.NW_012001098v1       245935 1025 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=29618.000000
s hg38.chrX_KI270880v1_alt     212343 125 +    284869 gtgcaccaccatgcccggctaatttttttttttctttgtttttgtagagacaagctttcaccgtgtgacccactctggtctcaaagtcctgggctcaagcgattctcctgccttggcctcctgaa
s cerAty1.NW_012001098v1       246960 123 -   1025902 gtgcaccgccgtgcccggctaa--tttttttttcttcgtttttgtagagacacggtttcaccacgtggcccactccagtctcaaagtcctgagctcaagcgatcctcctgcctcggcctcccaac
i cerAty1.NW_012001098v1       I 1025 C 0
s chlSab2.chrUn_KE147541v1     192151 125 -    811265 gagcaccaccgtgcccggctaatttttttttttcttcgtttttgtagagacacggtttcaccacgtggcccactccggtctcaaagtcctgagctcaagcgatcctcctgcctcggcctcccgac
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1       210072 4108 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=71314.000000
s hg38.chrX_KI270880v1_alt     212468 143 +    284869 gtgctgggatttcaggtgtgagtcactgcacccaaccTGGATGGAGATGTTTTTGTTTGCGCCTGGACGTGTCTTGCAAACTTGCCAAGGCTTCTGTCTTCATCGAGCTGAACCAGGGTTCTCAGCAGCTCAcaatgattatt
s cerAty1.NW_012001098v1       247083 143 -   1025902 gtgctgggatttcgggcgtgagccactgcgcccAAGCTGGATGGAGACGTTGCTGTTCGCAGCTGGACGTGTCTTGCAAACTTTGCAAGGCTTCTCTCTTCATCAAGCCGAACCAGTGTCCTCAGGAGCTCACAATGATTATT
i cerAty1.NW_012001098v1       C 0 I 2451
s chlSab2.chrUn_KE147541v1     192276 143 -    811265 gtgctgggatttcgggcgtgagccaccgcgcccaaccTGGATGGAGATGTTGCTGTTCGCAGCTGGACGTGTCTTGCAAACTTTGCAAGGCTTCTGTCTTCATCAAGCCGAACCAGTGTCCTCAGGAGGTCACAATGATTATT
i chlSab2.chrUn_KE147541v1     C 0 I 2332
s manLeu1.NW_012108508v1       214180 143 -    350446 gtgctgggatttcgggcgtgagccaccgcgcccaaccTGGATGGAGATGTTGCTGTTCGCAGCTGGACGTGTCTTGCAAACTTTGCAAGGCTTCTCTCTTCATCAAGCCGAACCAGTGTCCTCAGGAGCTCACAATGATTATT
i manLeu1.NW_012108508v1       I 4108 I 4379
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     212611 748 +    284869 cttaattttttttttttttttttgagacggagtctcgctctgttgcccaggctggagtgcagttggtgccatctcggctcactgcaagctctgtctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaattttttggtatttttagtagagacggggtttcaccgtgttagccaggctggtctcgatctcctgacctcgtgatccacccacctcgccctcccaaggtgctgagattacaggtgttcctaaatatttgtaagtgccaggtgtttaatgaaagcgtaatgggtagagaagccatctcatgtgtatattgtcacacgtgtccgtgtgaagagaccacgaaacagacttcatgtgagcaataaaactttttaatcacctgggtgcaggcgggctgagtccgaaaagagagtcactgcagggagatacgggcggggccgttttataggatttgggtacatagtggaaaattacaatcaaagggggttgttctctggctggcagggggcaggtgacacaaggtgctcattgagccaggatgagccaggagagggaatttcacaaggtaaagtcatcgcttaaggcaggaacaagccattttcacttctttcgtgatttttcggttacttcaggccatctggatgtatatgtgcaggtcacagggcatatgatggcttcgcttgggctcagaggcctgaca
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=21816.000000
s hg38.chrX_KI270880v1_alt     213359 597 +    284869 tatatgtgtgtgaatgtacatgtatgt----gtgcaggcatgcgcctatatgtgtctgtag-gtgtacgtatgtatg------tgtatatatgtgtgaatatgcatgtatgtgtat-----------aggcctatgcgcgtatatatgtgtgcacatgtatgtatttgtgtgtgcatgtgtatatgtctgtatg-----tatgtgtatatgtgtgcatgtatgtgtatatgtgtgtatgtatgtgtatgcatttataacgtgtgtatgtatatgtgtttctgcatatatttgt---------tatgcatgcatatctgtgtat--gtatatgtgtgcatgt----------gtgtataatgtgtgtatatgtgtgtatgtgtgtatatat----gtatgtatgtgttataacgtatgtatatgcatatgtt----------------atgtgtgcatatctgtgtgtatgtatatatgtgtgtgcat-tgtgtaaatatgtgtgtgtgcat-------gtgtgtatagtgtgtgtgtt-------------tgcatgtataccaagataactttcagcagtccttatgcatgt----------------tatgtgtgcatatgtgtgtatgtgt-------------atgtgtgtgcatatctgtgtgtatgtatatgtgtatgcatgtgtgtatgtgtgtgcatgtgtgtatag
s macFas5.chrUn_KE146137         1246 694 -     20017 tatatgtgtatgagtgtatatttgtgtctatgtgtatataggtgc--atatgtgtttataatgtgtgtatgtgtatgggtctatgtacacatttgtgtatgtgcatgtgtgtgtgtgtttataaaacaggtgtttgtgtatatgtttttatgtatttttgtgtatgtgtgtatatatgtgtgtatgtgcttatgacacgtgtgtgtatgtgtgtgtatatttgtgtgtatttttatatgtgtgtgtatatgtttataatacgtgtgtgtatatgtgt----gaatgtgtccgtgtgtgttaatatgtgtgcatgtgtgtatataagtgtatgtgtgtatatttcagtgtttgtgtata-tgtgtgtatgtgtttgtatgtgtgtatatgtttgtgtatgtgtgtatttgagcatgtgtatatgtgtgtgtttataatacgtgtgtgtatgtgtgtatatttgtgtgtttgtgtatatatgtgtgtaggtgtgtatatgtgtatatgtgcatttataagatgtgtat-gtacatgtgttcctgcatatattatgtatgcatgc----atatctgtacgta-----tatgtgtgtatgtgtttataatgtgtatgtgtgtacatgtgtgtatgtgtctataacgtgcgtgtgtatatgcatatctgtgtatgtatatatgtgtctgcatgtgcatatatgcgta----tgtttataa
i macFas5.chrUn_KE146137       N 0 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 393961 5553 + 155549662 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=61888.000000
s hg38.chrX_KI270880v1_alt     213956 542 +    284869 tgtgtgtgcacgtatgtgtatgtgtgtgtgtgcat--gtgtgtatagtgtgtgtgt------ataccgagatagctttcagcagtccttatgcatatgtcatgtgtgcatatccgtgtgtatgtat----gtgtgtgcacgtatgtgtatatgtgtg-----------------tgtgtgcatgtgtgtata-----gtgtgtgtgtataccgagataactttcagcagtccttatgc--atgttatgtgtgcatatctgtgtgtatgtatgtgtgtgtgcatgtgtgtata-----------tatgtgtgtgtacgtgtgtatatgtgt-------gtgtgcatgtgtgtatgtgtatgtgtgtgca-----------------cgtgtgtatatgtgtgtgcatgtgt-----gtatgtgtatgtgtgtgcacgtgtgt---atatgtgtgtgcatgtgtgtata-tatgtgtgtgtgt-----gcgtgtatactgagataactttcagcagtccttatgcatatgtcatgtgtgcatatgtatgtat------atgtgtgtgcatatttg-----------------tgtgtatgtatataagtgtgtgcat-tgtgtgcaatgtgtgtgtgcacgtgtgtatatgtg--
s panTro5.chrX                 399514 520 + 155549662 tgtgtgtgcatgtgtgtaaatatgtgtgtgtgcatatgtgtgtatagtgtgtgtgtgcatgtataccgagataactttcagcagtccttatgcatatgttatgtgtgcatatctgtgtgtatgtat--atgtgtgtgcatgtgtgtatatatgtgtgcacgtgtgtat---atgtgtgtgcatgtgtgtatatatgtgtgtgcgtgtatactgagataactttcagcagtccttatgcgtatgtcatgtgtgcatat--gtgtgtatgtgtatgtgtgtgcat---------------------atctgtgtgta----tgtatatgtgt-------gtgcatatctgtgtgtgtgtatgtgtgtgca-------------------------tatctgtgtg-------------tatgtatatgtgtgtgcacgtgtgtgcaatgtgtgtgtgcatgtgtgtatagtgtgtgtgCGCAC-----GCGTGTATACTGAGATAACTTTCAGCAGTCCTTATGCATATGTCAtgtgtgcatatgtgtgtatg--tgtatgtgtgCGCatatctg-----------------tatgtat---------------------------atgtgtgtgtgcatgtgtgca---atg--
i panTro5.chrX                 I 5553 C 0
s macFas5.chrUn_KE146137         1940 608 -     20017 tgtgtgtatatgtatgtgtgtgtgtatatgtgtgt--gtttataacgtgtgtatgtgtatgtgta-------------------tatgcatatatatgttatgtatgcatatctgtgtgtatgtatatatgtgcgtgcatgtgtatatataagtgtgtatgtgtttataaaatgtgtgtatatgtgtatgtgtgtatatttgagtgtatgcatatata-------------tgtatgtgtttataatgtgtgtatatgtgtttatgtgtgtatacgtgtgtatgtgtctataacgtgtgtaggtatatgtgtgtatacgtgtgtatgtgtctataacgtgtgtatgtatatgtgtgtatgcatgtatatgttctttatgcatatctgtgtatgtatatgtgtgtatgtgtttataatatgtgtgtatttgtgtatgtgtgt---atatctgagtgtatgtgcatata-tgtgtgtatgtgtttagaacgtgtgtatgtaaatgtgtttctgc-------ctgtatatgttacgtatgcatatccgtgcatgtatatatgtgtgtgcatgtgtgtatagtatgtgtgtgcatgtgtgtatatatgtgtgtgtgcatgtgtgtatagtgtgtgtgtgcatgtgtgtgtgtatgtg
i macFas5.chrUn_KE146137       C 0 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I
e panPan2.chrUn_NW_014024190v1 124239 2948 -    177848 I

a score=19935.000000
s hg38.chrX_KI270880v1_alt     214498 80 +    284869 tgtgtgcatgtgtgtatatatatgtgtgtgtgtttgcatgtataccgagataattttcagcagtccttatgcatatgtta
s panTro5.chrX                 400034 75 + 155549662 tgtgtgcatgtgtgtatA---GCGTGTGTGTGCACGCGTGTATACTGAGATAACT--CAGCAGTCCTTATGCATATGTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 127187 72 -    177848 tgtgtgcatgtgtgtatatatatgtgtgtg--------tgtacactgagataactttcagcagtccttatgcatatgtca
i panPan2.chrUn_NW_014024190v1 I 2948 C 0
s macFas5.chrUn_KE146137         2548 64 -     20017 tgtgtgcatgtgtgtata---gtgtgtgtgtgcatgtgtgtatagtgtg------------tgtgcatgtgtgtatata-
i macFas5.chrUn_KE146137       C 0 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I
e gorGor5.CYUI01015925v1       282651 3360 +    417917 I

a score=13093.000000
s hg38.chrX_KI270880v1_alt     214578 26 +    284869 tgTGTGCATAT--------------------------CTGTGGGTAT-GTATA
s panTro5.chrX                 400109 52 + 155549662 tgtgtgcatatgtgtgtatgtgtatgtgtgcgcatatctgtgtgtat-gtata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 127259 52 -    177848 tgtgtgcatatgtgtgtatgtgtatgtgtgcgcatatctgtgtgtat-gtata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286011 26 +    417917 tgtgtgcatat--------------------------ttgtgtgtat-gtata
i gorGor5.CYUI01015925v1       I 3360 C 0
s macFas5.chrUn_KE146137         2612 27 -     20017 tgtgtgtgtgc--------------------------atgtgtgtatagtgtg
i macFas5.chrUn_KE146137       C 0 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e macNem1.NW_012017243v1       366227 11142 +  25972781 I

a score=20526.000000
s hg38.chrX_KI270880v1_alt     214604 20 +    284869 TGTGTGTG--CACGTGTGTGCA
s panTro5.chrX                 400161 22 + 155549662 tgtgtgtgtgcatgtgtctgca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 127311  8 -    177848 tgtgtgtg--------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286037 20 +    417917 tgagtgtg--cacgtgtgtgca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135014 20 + 149150640 tgtgtgtg--catgtgtgtata
i rheMac8.chrX                 N 0 I 1
s macFas5.chrUn_KE146137         2639 20 -     20017 tgtgtgtg--catgtgtgtata
i macFas5.chrUn_KE146137       C 0 I 1
s macNem1.NW_012017243v1       377369 20 +  25972781 tgtgtgtg--catgtgtgtata
i macNem1.NW_012017243v1       I 11142 I 1
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     192419 2332 -    811265 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M

a score=3822.000000
s hg38.chrX_KI270880v1_alt     214624 2 +    284869 AT
s panTro5.chrX                 400183 2 + 155549662 at
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       286057 2 +    417917 at
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135035 2 + 149150640 at
i rheMac8.chrX                 I 1 C 0
s macFas5.chrUn_KE146137         2660 2 -     20017 at
i macFas5.chrUn_KE146137       I 1 C 0
s macNem1.NW_012017243v1       377390 2 +  25972781 at
i macNem1.NW_012017243v1       I 1 C 0
s chlSab2.chrUn_KE147541v1     194751 2 -    811265 at
i chlSab2.chrUn_KE147541v1     I 2332 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e colAng1.NW_012115411v1       353102 4194 +   1230721 M
e panPan2.chrUn_NW_014024190v1 127319 0 -    177848 C

a score=1883.000000
s hg38.chrX_KI270880v1_alt     214626 1 +    284869 G
s panTro5.chrX                 400185 1 + 155549662 g
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       286059 1 +    417917 a
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135037 1 + 149150640 g
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         2662 1 -     20017 g
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       377392 1 +  25972781 g
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     194753 1 -    811265 g
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       357297 1 +   1230721 g
i colAng1.NW_012115411v1       M 4194 C 0
e manLeu1.NW_012108508v1       214323 4379 -    350446 I
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       247226 2451 -   1025902 I
e panPan2.chrUn_NW_014024190v1 127319 0 -    177848 C

a score=2017588.000000
s hg38.chrX_KI270880v1_alt     214627 482 +    284869 TGTGTGTGCATGTGTGT--TAGTGGGTGTGTGTGCGCAT-GTA-TACGGAGATAACTTTCAGCAGTCCTTTGCCTTCTAGTGGCATTCTCACGTTTAATTTTATTCCCTCCTTTTTTAAGCTGTCTGA--CTCCTCTTACTTTTG---CCCGCGCCTTCGGTTTTGCTGGCGTGAGCCTCCCCCGGGTGTGAGTATTGCCTCTCCGTCAGGACCTGGCTGAGGCTCTCCCATGGATCTTGTAGCAGCAAAGT-------GTCGTCACTGTGAGAGGCAGGACTTTTAAAAGCCCTCCAAGATGACCATCCTCCAGTGGCCACTT-TTTGA-TTTCTTTAAGAGGCATTTTGATTCCACAGTCTCTCG-TGATGCTGCATTCCTTTTCCACTGGCATTTACAGCTGGAATCACGGGCAGTTTCCCTCCCGGGGTGAAAAGGCGGCCGTGAGTGTG--------GCTCTGCAGGGAGCCCTGGAGACTGGGTTTctgcccccaggcctctg
s panTro5.chrX                 400186 482 + 155549662 tgtgtgtgcatgtgtgta-tagtgtgtgtgtgcgcgcgt-gtA-TACTGAGATAACTTTCAGCAGTCCTTTGCCTTCTAGTGGCATTCTCACGTTTAACTTTATTCCCTCCTTTTTTAAGCTGTCTGA--CTCCTCTTACTTTTG---CCCGCGCCTTCGGTTTTGCTGGCGTGAGCCTCCCCCGGGTGTGAGTATTGCCTCTCCGTCAGGACCTGGCTGAGGCTCTCCCATGGATCTTGTAGCAGCAAAGT-------GTCGTCACCGTGAGAGGCAGGACTATT-AAAGCCCTCCAAGATGACCATCCTCCAGTGGCCACTT-TTTGA-TTTCTTTAAGAGGCATTTTGATTCCACAGCCTCTCG-TGATGCTGCATTCCTTTTCCACTGGCATTTACCGCTGGAATCACGGGCAGTTTCCTTCCCAGGGTGAGAAGGCGGCCGTGAGTGTG--------GCTCTGCAGGGAGCCCTGGAGACTGGGTTTCTGCCCCCAGGCCTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 127319 476 -    177848 ------tgcatgtgtgta-tagtgtgtgtgtgCACGCGT-GTA-TACTGAGATAACTTTCAGCGGTCCTTTGCCTTCTAGTGGCATTCTCACGTTTAACTTTATTCCCTCCTTTTTTAAGCTGTCTGA--CTCCTCTTACTTTTG---CCCGCGCCTTCGGTTTTGCTGGCGTGAGCCTCCCCCGGGTGTGAGTATTGCCTCTCCGTCAGGACCTGGCTGAGGCTCTCCCATGGATCTTGTAGCAGCAAAGT-------GTCGTCACCGTGAGAGGCAGGACTATT-AAAGCCCTCCAAGATGACCATCCTCCAGTGGCCACTT-TTTGA-TTTCTTTAAGAGGCATTTTGATTCCACAGCCTCTCG-TGATGCTGCATTCCTTTTCCACTGGCATTTACAGCTGGAATCACGGGCAGTTTCCTTCCCGGGGTGAGAAGGCGGCCGTGAGTGTG--------GCTCTGCAGGGAGCCCTGGAGACTGGGTTTCTGCCCCCAGGCCTCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286060 486 +    417917 tgtgtgtgcatgtgtgtattagtgtgtgtgtgtgCACGTGGTATTACTGACATAACTTTCAGCAGTCC-TTGCCTTCTAGTGGCATTCTCACGTTTAACTTTACTCCCTCCTTTTTTAAGCTGTCTGA--CTCCTCTTACTTTTG----CCGCGCCTTCGGTGTTGCTGGCGTGAGCCTTCCCCGGGTGTGAGTATTGCCTCTCCGTCACGACCTGGCTGAGGCTCTCCCATGGATCTTGTAGCAGCAAAGT-------GTCGTCACTGTGAGAGGCAGGACTATTAAAAGCCCTCCAAGATGACCATCCTCCAGTGGCCACTT-TTTGATTTTCTTTAAGAGGCATTTTGATTCCACAGTCTCTCGTTGATGCTGCATTCCTTTTCCACTGGCATTTACAGCTGGAATCACGGGCAGTTTCCTTCCCGGGGTGAAAAGGCGGCCGTGAATGTG--------GCTCTGCAGGGAGCCCTGGAGACTGGGTGTCTGCCCCCAGGCCTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135038 498 + 149150640 tgtgtgtgcatgtgtgta-tagtgtgtgtgtgtgtgcgt-gtA-TACCGAGATAACTTTCAGCAGTCCTTTGCCTCTTAGTGGCATTCTCCCGTTTAACTGTATTCCCTCCTTTTTGAAGCTGCCTGG----CTGTTTACTTTTGCTCCCCCCGCATTGGGTTTTGCCAGCGTGAGCCTCTCCCGGGTGTGAGTG-TACCTGTCTCTCAGGACCTGGCTAAGGCTCTCCCATGGAGCTCGTAGCAGCAAAGTGACAAGGGCCGTCACTGCGAGGGGCAGGACGATTCAAAGCCCT-CACGATGACCATCGTCCCGTGGCCACTTTTTTCA-TTTCTTTAAGAGGCATTTTTATTCCGCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCAGGGGCCCTTTCCTTCCCACGGTGAAAAGGCGGCCTTGAATTGGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         2663 498 -     20017 tgtgtgtgcatgtgtgta-tagtgtgtgtgtgtgtgcgt-gtA-TACCGAGGTAACTTTCAGCAGTCCTTTGCCTCTTAGTGGCATTCTCCCGTTTAACTGTATTCCCTCCTTTTTGAAGCTGCCTGG----CTGTTTACTTTTGCTCCCCCCGCATTGGGTTTTGCCAGCGTGAGCCTCTCCCGGGTGTGAGTG-TACCTGTCTCTCAGGACCTGGCTAAGGCTCTCCCATGGAGCTCGTAGCAGCAAAGTGACAAGGGCCGTCACTGCGAGGGGCAGGACGATTCAAAGCCCT-CACGATGACCATCGTCCCGTGGCCACTTTTTTCA-TTTCTTTAAGAGGCATTTTTATTCCGCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCAGGGGCCCTTTCCTTCCCACGGTGAAAAGGCGGCCTTGAGTTGGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       377393 498 +  25972781 tgtgtgtgcatgtgtgta-tagtgtgtgtgtgtgtgcgt-gtA-TACCGAGATAACTTTCAGCAGTCCTTTGCCTCTTAGTGGCATTCTCCCGTTTAACTGTATTCCCTCCTTTTTGAAGCTGCCTGG----CTGTTTACTTTTGCTCCCCCCGCATTGGGTTTTGCCAGCGTGAGCCTCTCCCGGGTGTGAGTG-TACCTGTCTCTCAGGACCTGGCTAAGGCTCTCCCGTGGAGCTTGTAGCAGCAAAGTGACAAGGGCCGTCACTGCGAGGGGCAGGACGATTCAAAGCCCT-CACGATGACCATCGTCCCGTGGCCACTTTTTTCA-TTTCTTTAAGAGGCATTTTTATTCCGCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCAGGGGCCCTTTCCTTCCCACGGTGAAAAGGCGGCCTTGAGTTGGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       249677 498 -   1025902 tgtgtgtgcatgtgtgta-ta--gtgtgtgtgtgtgcgt-gtA-TACCGAGATAACTTTCAGCAGTCCTTTGCCTCTTAGTAGCATTCTCCCGTTTAACTGCATTCCCTCCTTTTTGAAGCTGCCTGG--CTCTGTTTACTTTTGCTCCCCCCGCATTGGGTTTTGCAGGCTTGAGCCTCTCCCAGGTGTGAGTG-TACCTGTCTCTCAGGACCTGGCTAAAGCTCCCCCATGGAGCTTGTAGCAACAAAGTGACAAGGGCCGTCGCTGCGAGGGGCAGGACGATTCAAAGCCCT-CACGATGACCATCATCCCGTGGGCACTTCTTTCA-TTTCTTCAAGAGGCATTTTTATTCCGCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCACGGGCCCTTTCCTTCCCAGGGTGAAAAGGCGGCCTTGAGTTGGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i cerAty1.NW_012001098v1       I 2451 C 0
s chlSab2.chrUn_KE147541v1     194754 498 -    811265 tgtgtgtgcatgtgtgta-ta--gtgtgtgtgtgcgcgt-gtA-TATCGAGATAACTTCCAGCAGTCCTTTGCCTTTTAGTGGCATTCTCCCGTTTAACTGTATTCCCTCCTTTCTGAAGCTGCCTGG--CTCTGCTTACTTTTACTCCCCCCGCATTGCGTTTTGCCGGCGTGAGCCTCTGCCGGGTGTGAGTG-TGCCTGTCCCTGAGGACCTGGCTAAGGCTCTCCCAGGGAGCTTGTAGCAGCAAAGTGACAAGGGCTGTCACTGTGAGGGGCAGGACAATTCAAAGCCCT-CACAATGACCGTCATCCCGTAGCCACTTTTTTCA-TTTCTTTAAGAGGCATTTTAATTTCTCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCACGGGCCCTTTCCTTCCCAGGGTGAAAAGGCGGCCTTGAGTTCGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       218702 496 -    350446 tgtgtgtgcatgtgtgta-ta--gtgtgtgtgtgtgcgt-gtA-TACCGAGATAACTTTCAGCAGTCCTTTGCCTTTTAGTGGCATTCTCCCGTTTAACTGTATTCCCTCCTTTCTGAAGCTGCCTGG----CTGTTTACTTTTGCTCCCCCCGCATTGGGTTTTGCTGGCTTGAGCCTCTCCCAGGTGTGAGTG-TGCCTGTCCCTGAGGACCTGGCTAAGGCTCTCCCATGGAGCTCGTAGCAGCAAAGTGACAAGGGCCGTCACTGCGAGGGGCAGGACGATTCAAAGCCCT-CACGATGACCATCATTCCGTGGCCACTTCTTTCA-TTTCTTTAAGAGGCATTTTTATTCCGCAGCCTCTCG-TAATGTTGGATTCCTTTTCCACTGGCATTTAGAGCTGGAATCACGGGCCCTTTCCTTCCCAGGGTGAAAAGGCGGCCTTGAGTTGGGCTGGAGAGCTCCGCAGGGAGCCCTGGAGACCGGGTTTCTGCCCCCAGGCCTCTG
i manLeu1.NW_012108508v1       I 4379 C 0
s colAng1.NW_012115411v1       357298 500 +   1230721 tgtgtgtgcctgtgtgta-tagtgcgtgtgtgtgcgtgt-gGA-TACCGAGATGACTTTCAGCAGTCCTTTGCCTTTTAGTGGCATCCTCCCGTTTAACTGCATTCCCTCCTTTTTGAAGCTGCCTGGCTCTCTGCTTACTTTTG--CCCCCTGCATTGGGTTTTGCCGGCGTGAGCATCTCCCGGGTGTGAGCG-TGCCTCTCCCTCAGGACCTGGCTGAGGCTGTCCCACGGAGCTTGTAGCAGCAAAGAGACAAGGGCTGTCACCGCCAGGGGCAGGACGATTAAAAGCCCT-CACGATGACCATGATCCCGTGGCCACTTTTTTCA-TTGCTGTAAGAGGCATTTGTATTCCGCAGCCTCTGG-TAACGTCGGATTCCTTTTCCGCTGGCGTTTAGAGCTGGAATCACGGGTCCTTTCCTTCCCAGGGTGAAAAGGCGGCCTTGACTTTGGCTGGAGAGCTCTGCAGGGAGCCCTGGAGACCCGGTTTCTGCCCCCAGGCCTCTG
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             255154 2642 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I

a score=1508935.000000
s hg38.chrX_KI270880v1_alt     215109 280 +    284869 cccaggtgtgtaacacagcgaggg--gcacccaggctgtttgcatagcaattggggtgtgatttgc------------------------------------------------aatttaataacagtcctgaGGGCTTCAGGACC-AACAGCTCAATGGGACCAGCTGCTCTCAGCTCCTCTGAGGGCAAGAAATGAAAATTAAATTAAATTTAGAACAGAGTCATGACATAAATGACAGTGGGGAAGATGGGGGTTGTGTACCAGGCAAGCGTTCTTGGACGAGACA----CCGGGGTAGGGCTGACGCAGGTGAGACCCCCTCTG--------------------------GCCCCCC-
s panTro5.chrX                 400668 325 + 155549662 CCCAGGTGTGTAACACAGCGAGGG--GCACCCAGGCTGTTTGCATACCAATTGGGGTGTGATTTGCATGT-GGGCAGCG-GGCCTGGAAATCCCTGAGCACCAgctga-ggggaaatttaataacagtcctgagggcttgaggacc-agcagctcaatgggaccagctgctctcagctcttctgagggcaaaaaatgaaaattaaattaaattTAGAACAGAGTCATGACATAAATGACAGTGAGGAAGATGGGGGTTGTGTACCAGGCAAGGGTTCTTGGACGAGACA----CCGGGGTAGGGCTGACGCAGGTGAGACCCCCTCTG--------------------------GCCCCCC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 127795 325 -    177848 CCCAGGTGTGTAACACAGCGAGGG--GCACCCAGGCTGTTTGCATACCAATTGGGGTGTGATTTGCATGT-GGGCAGCG-GGCCTGGAAATCCCTGAGCACCAgctga-ggggaaatttaataacagtcctgagggcttgaggacc-agcaactcaatgggaccagctgctctcagctcttctgagggcaaaaaatgaaaattaaattaaattTAGAACAGAGTCATGACATAAATGACAGTGAGGAAGATGGGGGTTGTGTACCAGGCAAGGGTTCTTGGACGAGACA----CCGGGCTAGGGCTGGCGCAGGTGAGACCCCCTCTG--------------------------GCCCCCC-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286546 353 +    417917 CCCAGGTGTGTAACACAGCGAGGG--GCACCCAGGCTGTTTGCATACCAATTGGGGTGTGATTTGCATGCGGGGCAGTG-GGCCTGGAAATCCCTGAGCACCAgctgagggggaaatttaataacagtcctgagggcttgaggact-aacagctcaatgggaccagctgctctcagctcctctgagggcaaaaaatgaaaattaaattaaattTAGAACAGAGTCATGACATAAATGACAGTGGGGAAGGTGGGGGTTGTGTACCAGGCAAGGGTTCTTGGAGGAGACA----CCGGGGTAGGGCTGACGCAGGTGAGACCCCCTCTGGCCCCCCACCCCCACTGTCCCCTCCCGCCCCCC-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135536 324 + 149150640 CCCAGGTGTGTAACACAGCGAGGGGTGCACCCAGGCTGTTTGCATACCAATTGGGATGTGATTTGCATGC--GGCCGC--GGCCTGGAAATCCCTGAGCACCAgctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaatgaaaattaaattaaattTAGAACATACTCATGACATAGATGGCAGTGGGGAAGATGGGGGTTGTGTACCAGGGAA-CGTTGTTGGACGAGACA----CCAGGATAGGGCTGATAAGGGTGAGACCCCCTCTG--------------------------GTCCCCC-
i rheMac8.chrX                 C 0 I 3
s macFas5.chrUn_KE146137         3161 324 -     20017 CCCAGGTGTGTAACACAGCGAGGGGTGCACCCAGGCTGTTTGCATACCAATTGGGATGTGATTTGCATGC--GGCCGC--GGCCTGGAAATCCCTGAGCACCAgctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaATGAAAATTAAATTAAATTTAGAACATACTCATGACATAGATGGCAGTGGGGAAGATGGGGGTTGTGTACCAGGGAA-CGTTGTTGGACGAGACA----CCAGGATAGGGCTGATGAGGGTGAGACCCCCTCTG--------------------------GTCCCCC-
i macFas5.chrUn_KE146137       C 0 I 3
s macNem1.NW_012017243v1       377891 324 +  25972781 CCCAGGTGTGTAACACAGCGAGGGGTGCACCCAGGCTGTTTGCATACCAATTGGGATGTGATTTGCATGC--GGCCGc--ggcctggaaatccctgagcaccagctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaaggaaaattaaattaaattTAGAACATACTCATGACATAGATGGCAGTGGGGAAGATGGGGGTTGTGTACCAGGGAA-CGTTGTTGGACGAGACA----CCAGGATAGGGCTGATGAGGGTGAGACCCCCTCTG--------------------------GTCCCCC-
i macNem1.NW_012017243v1       C 0 I 3
s cerAty1.NW_012001098v1       250175 324 -   1025902 CCCAGGTGTGTAACACAGCGAGGGGCGCACCCAGGCTGTTTGCATACCAATTGGGGTGTGATTTGCATGC--GGCCGC--GGCCTGGAAATCCCTGAGCACCAgctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaatgaaaattaaattaaattTAGAACATACTCATGACATAAATGGCAGTGGGGAAGATGGGGATTGTGTACCAGGGAA-CGTTGTTGGACGAGACA----CCAGGATAGGGCTGATGAGGGTGAGACCCCCTGTG--------------------------GTCCCCC-
i cerAty1.NW_012001098v1       C 0 I 250
s chlSab2.chrUn_KE147541v1     195252 324 -    811265 CCCAGGTGTGTAACACAGCGAGGGGCGCACCCAGGCTGTTTGCATACCAATTGGGATGTGATTTGCATGC--GGCCGc--ggcctggaaatccctgagcaccagctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaatgaaaattaaattaaattTAGAACATACTCATGACATAAATGGCAGTGGGGAAGAAGGGGATTGTGTACCAGGGAA-CGTTCTTGGACCAGACC----CCAGGATAGGGCCGATGCGGGTGAGACCCCCTCTG--------------------------GTCCCCC-
i chlSab2.chrUn_KE147541v1     C 0 I 3
s manLeu1.NW_012108508v1       219198 324 -    350446 CCCAGGTGTGTAACACAGTGAGGGGCGCACCCAGGCTGTTTGCATACCAATTGGGATGTGATTTGCATGC--GGCCGT--GGCCTGGAAATCCCTGAGCACCAgctga-ggggatatttaataacagtcctcagggcttgaggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaatgaaaattaaattaaattTAGAACATACTCATGACATAAATGGCAGTGGGGAAGAAGGGGGTTGTGTACCAGGGAA-CGTTGTTGGACGAGACA----CCAGGATAGGGCTGATGAGGGTGAGACCCCCTCTG--------------------------GTCCCCC-
i manLeu1.NW_012108508v1       C 0 I 48
s colAng1.NW_012115411v1       357798 323 +   1230721 CCCAGGTGTGTAACACGG-GCGAGGGGCACCCAGGCTGTTTGCATACCAATTGGGGTGTGATTTGCATGC--GGCCGC--GGCCTGGAAATCCCCGAGCACCAgctga-ggggaaatttaataacagtcctcagggcttgcggaccaagaagctcaatgggaccagctgcactcagttcctctgagggcaa-aaatgaaaattaaattaaatttagcaCATACTCATGACATAAGTGGCAGTGGGGAAGGTGGGGGTTGTGTACCAGGGAC-CGTTCTTGGATGAGACA----CCAGGATAGCCCTGATGAGGGTGAGACTCCCTGTG--------------------------GTCCCCC-
i colAng1.NW_012115411v1       C 0 I 5
s saiBol1.JH378345             257796 329 +    465904 CCCAGGTGAGAAACGGGGCCGAGGGGGGGCCCGGGCGCTTTGCAGACCCATTGTGGGGTGATTTGCATGT--GGCCGGGAGACCTGGAAATCCCTGGGCAGCAGGTGA-GGGCAGATTTAATCACAGGCCTCGGGGCGTGAGGACC-AGGGTCTCCACGGGACCAGCTGCTGCCACGTCCCCCGACGGCAG-AAGATAAAATTAAATTAAGTTGAGGACCGGGTCACGGCGC-GATGGCAGAGGGGACGGCCGGGTTCGCATACGAGGCGT-GGTTCTCAGGCAAGACGGCACCCAGGGTGGGGCTGAGGCAGGTGAGGACCCCCCTG--------------------------TGCCCCCC
i saiBol1.JH378345             I 2642 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I

a score=1365.000000
s hg38.chrX_KI270880v1_alt     215389 1 +    284869 A
s panTro5.chrX                 400993 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128120 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286899 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       358126 1 +   1230721 A
i colAng1.NW_012115411v1       I 5 C 0
s saiBol1.JH378345             258125 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
e manLeu1.NW_012108508v1       219522 48 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     195576 3 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e rheMac8.chrX                 135860 3 + 149150640 I
e macNem1.NW_012017243v1       378215 3 +  25972781 I
e macFas5.chrUn_KE146137         3485 3 -     20017 I

a score=84295.000000
s hg38.chrX_KI270880v1_alt     215390 25 +    284869 ---CCCCACTGTCCCCC----AC--------TTGTACAAG
s panTro5.chrX                 400994 33 + 155549662 ---CCCCACTGTCCCCT----CCCAGGACTTTTGTACAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128121 33 -    177848 ---CCCCACTGTCCCCT----CCCAGGACTTTTGTACAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286900 32 +    417917 ---CCCCACTGTCCCCT----CCCAGGATT-TTGTACAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135863 33 + 149150640 ---CTCCACTATCCTCC----CCCAGGATTTTTGCACAAA
i rheMac8.chrX                 I 3 I 12
s macFas5.chrUn_KE146137         3488 33 -     20017 ---CTCCACTATCCTCC----CCCAGGATTTTTGCACAAA
i macFas5.chrUn_KE146137       I 3 I 12
s macNem1.NW_012017243v1       378218 33 +  25972781 ---CTCCACTATCCTCC----CCCAGGATTTTTGCACAAA
i macNem1.NW_012017243v1       I 3 I 12
s chlSab2.chrUn_KE147541v1     195579 33 -    811265 ---CTCCACTATCCTCC----CCCAGGATTTTTGCACAGA
i chlSab2.chrUn_KE147541v1     I 3 I 12
s colAng1.NW_012115411v1       358127 34 +   1230721 ---CCCCACTATCCCCC---TCCCAGGATTTTTGCACAGA
i colAng1.NW_012115411v1       C 0 I 12
s saiBol1.JH378345             258126 40 +    465904 CAAAGCCACCGTCCCCTCCCTCCCAGAATGTTTGTGCAAA
i saiBol1.JH378345             C 0 I 12
e manLeu1.NW_012108508v1       219522 48 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I

a score=122357.000000
s hg38.chrX_KI270880v1_alt     215415 32 +    284869 TGCCTGGT-GGACCTGGGACTAGCAGGAA--TGTG
s panTro5.chrX                 401027 32 + 155549662 TGCCTGGT-GGACCTGGGACTAGCAGGAA--TGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128154 32 -    177848 TGCCTGGT-GGACCTGGGACTAGCAGGAA--TGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286932 31 +    417917 TGCCTGGT-GGACCT-GGACTAGCAGGAA--TGTG
i gorGor5.CYUI01015925v1       C 0 I 2
s rheMac8.chrX                 135908 33 + 149150640 TGCCTGGCAGGGCCTCGGACTAGCAGGAA--TGTG
i rheMac8.chrX                 I 12 I 4
s macFas5.chrUn_KE146137         3533 33 -     20017 TGCCTGGCAGGGCCTCGGACTAGCAGGAA--TGTG
i macFas5.chrUn_KE146137       I 12 I 4
s macNem1.NW_012017243v1       378263 35 +  25972781 TGCCTGGCAGGGCCTCGGACTAGCAGGAATGTGTG
i macNem1.NW_012017243v1       I 12 I 4
s chlSab2.chrUn_KE147541v1     195624 33 -    811265 TGCCTGGCAGGGCCTCGGACTAGCAGGAA--TGTG
i chlSab2.chrUn_KE147541v1     I 12 I 4
s manLeu1.NW_012108508v1       219570 33 -    350446 TGCCTGGCAGGGCCTCGGACTAGCAGGAA--CGTG
i manLeu1.NW_012108508v1       I 48 I 4
s colAng1.NW_012115411v1       358173 33 +   1230721 TGCCTGGCAGGGCCTCGGACTAGCAGGAA--TGTG
i colAng1.NW_012115411v1       I 12 I 15
s saiBol1.JH378345             258178 32 +    465904 TGCTCGGC-TGTCCTGGGACAAGCAGGGA--CGGG
i saiBol1.JH378345             I 12 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I

a score=26905.000000
s hg38.chrX_KI270880v1_alt     215447 9 +    284869 TCCCCAGCa
s panTro5.chrX                 401059 9 + 155549662 TCCCCAGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128186 9 -    177848 TCCCCAGCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286965 9 +    417917 CCCCCAGCA
i gorGor5.CYUI01015925v1       I 2 C 0
s rheMac8.chrX                 135945 9 + 149150640 TCCCTGACA
i rheMac8.chrX                 I 4 C 0
s macFas5.chrUn_KE146137         3570 9 -     20017 TCCCTGACA
i macFas5.chrUn_KE146137       I 4 C 0
s macNem1.NW_012017243v1       378302 9 +  25972781 TCCCTGACA
i macNem1.NW_012017243v1       I 4 C 0
s chlSab2.chrUn_KE147541v1     195661 9 -    811265 TCCCTGACA
i chlSab2.chrUn_KE147541v1     I 4 C 0
s manLeu1.NW_012108508v1       219607 9 -    350446 TCCCTGACA
i manLeu1.NW_012108508v1       I 4 C 0
s saiBol1.JH378345             258210 9 +    465904 TCCCTGGCC
i saiBol1.JH378345             C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358206 15 +   1230721 I

a score=23965.000000
s hg38.chrX_KI270880v1_alt     215456 5 +    284869 tgctt
s panTro5.chrX                 401068 5 + 155549662 TGCTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128195 5 -    177848 TGCTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286974 5 +    417917 TGCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135954 5 + 149150640 TGCTT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         3579 5 -     20017 TGCTT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       378311 5 +  25972781 TGCTT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195670 5 -    811265 TGCTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219616 5 -    350446 TGCTT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       358221 5 +   1230721 TGCTT
i colAng1.NW_012115411v1       I 15 C 0
s saiBol1.JH378345             258219 5 +    465904 GGCTT
i saiBol1.JH378345             C 0 I 207
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I

a score=211832.000000
s hg38.chrX_KI270880v1_alt     215461 66 +    284869 ttgctgtcagtgtttgcccttaacttgtctgagtatcagaattagctctgattcttttaactttaa
s panTro5.chrX                 401073 66 + 155549662 TTGCTGTCAGTGTTTGCCCTTAACTTCTCTGACTATCAGAATTATCTCTGATTCTTTTAACTTTAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128200 66 -    177848 TTGGTGTCAGTGTTTGCCCTTAACTTGTCTGAGTATCAGAATTATCTCTGATTCTTTTAACTTTAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       286979 65 +    417917 TTGGTGTCAGTGTTTGCCCTTAACTTGTC-GAGTATCAGAATTATCTCTGATTCTTTTAACTTTAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 135959 66 + 149150640 TTCATGTCAATGTTTGTCTCTAACTTGTCTGACTATCAGAATTATCGGTGATTCTTTTAACTTTAA
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         3584 66 -     20017 TTCATGTCAATGTTTGTCTCTAACTTGTCTGACTATCAGAATTATCGGTGATTCTTTTAACTTTAA
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       378316 66 +  25972781 TTCATGTCAATGTTTGTCTCTAACTTGTCTGACTATCAGAATTATCGGTGATTCTTTTAACTTTAA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195675 66 -    811265 TTCATGTCACTGTTTGTCTCTAACTTGTCTGACTACCAGAATTATCGGTGACTCTTTTAACTTTAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219621 62 -    350446 TTCATGTCAATGTTTGTCTCTAACTTGT----CTATCAGAATTGTCGGTGATTCTTTTAACTTTAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       358226 66 +   1230721 TTGATGGCAATGTTTGTCTTTAACTTGTCTGACTGTCAGAGTTCTCGGGGATTCTTTTAACTTTAA
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I

a score=226672.000000
s hg38.chrX_KI270880v1_alt     215527 89 +    284869 att-ggtattcttattatt-tgagacggagtttccctcttgtcacccaggctGGAGTGCAATGGCACAATGTTggctcgctg-caacctctg
s panTro5.chrX                 401139 89 + 155549662 ATT-GGTAttcttattatt-tgagacggagtttcactcttgtcactcaggctggagtgcaatggcacaatgttgactcactg-caacctctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 128266 89 -    177848 ATT-GGTAttcttattatt-tgagacggagtttcactcttgtcactcaggctggagtgcaatggcacgatctcagctcactg-caacctcca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       287044 91 +    417917 ATTGGGTATTATTATTATTAttgaacggagtttcactcttgtcgcccaggctggagtgcaat-gcacaatgttggctcgctgccaacctctg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 136025 89 + 149150640 ATT-ACTATTGTAAttttt-tgagacggagtttcattcttgtcacccaggctggagtgcgacggcacaatctcggctcactg-caacctctg
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       378382 89 +  25972781 ATT-ACTATTGTAAttttt-tgagacggagtttcattcttgtcacccaggctggagtgcgacggcacaatctcggctcactg-caacctctg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195741 89 -    811265 ATT-ACTATTGTAAttatt-tgagacggagtttcattcttgtcactcaggctggagtgcgacggcacaattttggctcacgg-caacctctg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219683 89 -    350446 ATT-ACTATTGTAAttttt-tgagacggagtttcattcttatcacccaggctggagtgcaatggcacaattttggctcactg-caacctctg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       358292 89 +   1230721 ATT-ATCAGTATAGttctt-tgagacggagcttcactcttgtcacccaggctgcagtgcaccggcacaattttggctcacgg-caacctctg
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e macFas5.chrUn_KE146137         3650  0 -     20017 C

a score=79422.000000
s hg38.chrX_KI270880v1_alt     215616 37 +    284869 cctccctcattcaagcgattctcctgcctcagcctcc
s panPan2.chrUn_NW_014024190v1 128355 37 -    177848 cctcccgggttcaagcgattctcctgcctcagcctcc
i panPan2.chrUn_NW_014024190v1 C 0 I 1958
s gorGor5.CYUI01015925v1       287135 37 +    417917 cctcccaggatcaagagattctcctgtctcagcctcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 136114 37 + 149150640 cctcccgggttcaagagattgtcctgcttcagcctcc
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       378471 37 +  25972781 cctcccgggttcaagagattctcctgcttcagcctcc
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195830 37 -    811265 ccccccaggttcaagagattctcctgcttcatcctcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219772 37 -    350446 ccttccgggttcaaaagattctcctgcttccgcctcc
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       358381 37 +   1230721 cctcccaggttcaagagattctcctacttcagcctcc
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 401228  0 + 155549662 C
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e macFas5.chrUn_KE146137         3650  0 -     20017 C

a score=70453.000000
s hg38.chrX_KI270880v1_alt     215653 64 +    284869 agaaacttttaactttcaattgatattattattattatta------ttattattattattatttgagaca
s gorGor5.CYUI01015925v1       287172 57 +    417917 agaAACTTTTAACTTTTAA-----atta-tattattatta------ttattattattattattT-agacg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 136151 58 + 149150640 cgagACTTTTAC-TTTTAA-----ATAATAAttattatta------ttgttgttgttattatttcagaca
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       378508 55 +  25972781 cgagACTTTTAC-TTTTA--------AATAATTATTATTA------ttattgttgttattatttcagaca
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195867 64 -    811265 cgagACTTTTAA-TTTTAA-----ATTATTATTATTAttattattgttgttgttgttgttatttcagaca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219809 58 -    350446 cgagACTTTTAA-TTTTAA-----ATTAttattattatta------ttgttgttgttattatttcagaca
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       358418 58 +   1230721 cgagACTTTTAA-TTTTAA-----ATTAttgttattattg------ttgttgttgttattatttcagaca
i colAng1.NW_012115411v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 401228  0 + 155549662 C
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e macFas5.chrUn_KE146137         3650  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=34832.000000
s hg38.chrX_KI270880v1_alt     215717 27 +    284869 gagtttcactcttgtcacccaggctgg
s gorGor5.CYUI01015925v1       287229 27 +    417917 gagtttcacccttgtcactcaggctgg
i gorGor5.CYUI01015925v1       C 0 I 1
s macNem1.NW_012017243v1       378563 27 +  25972781 gagtttcactcttgttgcccaggctgg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195931 27 -    811265 gagtttcactcttgttgcccaggctgg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       219867 27 -    350446 gagtttcactcttgttgcccaggctgg
i manLeu1.NW_012108508v1       C 0 I 494
s colAng1.NW_012115411v1       358476 27 +   1230721 gagtttcactcttgtcgcccagactgg
i colAng1.NW_012115411v1       C 0 I 5029
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 401228  0 + 155549662 C
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e rheMac8.chrX                 136209  0 + 149150640 C
e macFas5.chrUn_KE146137         3650  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=6205.000000
s hg38.chrX_KI270880v1_alt     215744 60 +    284869 -ttgcaatggcacaattttgacTCATTGCAATGGCGTGATCTCGgctcactgcaacctcca
s gorGor5.CYUI01015925v1       287257 33 +    417917 -gtgcaatggc-caa-tttgactca-------------------------tgcaacctctg
i gorGor5.CYUI01015925v1       I 1 C 0
s macNem1.NW_012017243v1       378590 37 +  25972781 agtgcagtggcgcgatctcggctca------------------------ctgaaacctccg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195958 37 -    811265 agtgcagtggccagatctcagctca------------------------ctgcaagctccg
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 401228  0 + 155549662 C
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209  0 + 149150640 C
e macFas5.chrUn_KE146137         3650  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=26098.000000
s hg38.chrX_KI270880v1_alt     215804 36 +    284869 cctcccaggttcaagagattctcctgcctcagcctc
s panTro5.chrX                 401228 36 + 155549662 cctcccgggttcaagcgattctgctgcctcagcctc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       287290 35 +    417917 cctcccgggttcaagagattctcctgcttcag-ctc
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       378627 36 +  25972781 cctcccgggttcaagcgattctcctgcctcagcctc
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     195995 36 -    811265 cctcccgggtttacgccattctcctgcttcatcctc
i chlSab2.chrUn_KE147541v1     C 0 C 0
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209  0 + 149150640 C
e macFas5.chrUn_KE146137         3650  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=67018.000000
s hg38.chrX_KI270880v1_alt     215840 154 +    284869 cagaaacttttaactttcaattgatattattattattattattatt---------------tgagatggagtttcaatcttgttgcccaggctgGAGTGCAATGGCACAATGTTggctcgctgcaacctctgcctcccgggatcaagagattctcctgcctcagcctcc
s panTro5.chrX                 401264 160 + 155549662 cagagACTTTTAACTTTCAATTGGtattattattattattattattG---------TCAtttgagatggagtttcactcttgtcgcccaggctggagtgcaatggcacaatgttggctcgctgcaacctctgcctcccgggatcaagagattctcctgcctcagcctcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       287325 167 +    417917 cagagACTTTTAACTTTAAATTGGtattattattattattattattgctgctattattatttgagatggagtttcactcctgtcactcaggctggagtgcaatgg--ctattttgactcactgcaacctctgcctcccaggttcaagagattctcctgcttcagcctcc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     196031 166 -    811265 ccgagACTTTTAATTTTAAATTATTATTAttattattattgttgttgttgttg---ttatttcagacagagtttcactcttgttgcccaggctggagtgcagtggtgcgatctcggctcactgaaacctccgccttccgggttcaagcgattctcctgcctcagcctcc
i chlSab2.chrUn_KE147541v1     C 0 I 7357
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209   0 + 149150640 C
e macNem1.NW_012017243v1       378663   0 +  25972781 C
e macFas5.chrUn_KE146137         3650   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=29869.000000
s hg38.chrX_KI270880v1_alt     215994 168 +    284869 agagccttttaactttcaattgg-----tattattattattattattattattattattgttatttgagacggagtttcactcttgtcactcaggctGGAGTGCAATGGCACAATGTTagctcgctgcaacctctgcctccctcattcaagcgattctcctgcctcagcctcc
s panTro5.chrX                 401424 150 + 155549662 agagACTTTTAACTTTAAATTGG-----tattattattattattatt------------------tgagacggagtttcacccttgtcgcccaggctggagtgcaatggcacaatgttgactcactgcaacctctgcctcccgggttcaagcgattctgctgcctcagcctcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       287492 168 +    417917 agagAC--TTAACATTAAATTGAtattttattattattattattattattattattattattatttgagacagagtttcactcttgtcgcccaggctgga-tgcaatggtgcgatctcggctcactgcaa-ctccacctccc-agttcaagcgattctcctgcctcagcttcc
i gorGor5.CYUI01015925v1       C 0 I 753
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209   0 + 149150640 C
e macNem1.NW_012017243v1       378663   0 +  25972781 C
e macFas5.chrUn_KE146137         3650   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=4178.000000
s hg38.chrX_KI270880v1_alt     216162 48 +    284869 agaaacttttaactttcaattggtattattattattattattattatt
s panTro5.chrX                 401574 48 + 155549662 agagACTTTTAACTTTCAATTGGtattattattatcattattattatt
i panTro5.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209  0 + 149150640 C
e macNem1.NW_012017243v1       378663  0 +  25972781 C
e macFas5.chrUn_KE146137         3650  0 -     20017 C
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=33064.000000
s hg38.chrX_KI270880v1_alt     216210 178 +    284869 attattattattattatttgagatggagtttcactcttgtcacccaggctgGAGTGCAATGGCACAATGTTGGCTCACTGCAACCTCTGCCTCCCAGGATCAAGAGATtctcctgcctcagcctccagagccttttaactttcaattggcattattattattattattatt---------------------tgagatg
s panTro5.chrX                 401622 184 + 155549662 att---------------tgagacggagtttcacccttgtcactcaggctggagtgcaatggcacaatgttgactcactgcaacctctgcctcccgggttcaagcgattctgctgcctcagcctccagagACTTTTAACTTTAAATTGGtattattattattattattattattattattattattattatttgagacg
i panTro5.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         3650 184 -     20017 ATTACTATTGTAAttttttgagacggagtttcattcttgtcgcccaggctggagtgcgacggcacaatctcggctcactgcaacctctgcctcccgggttcaagagattctcctccttcagcctcccgagACTTTTACTTTTAAataataataattattattattgttgtt---------------attatttcagaca
i macFas5.chrUn_KE146137       C 0 C 0
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 136209   0 + 149150640 C
e macNem1.NW_012017243v1       378663   0 +  25972781 C
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=52787.000000
s hg38.chrX_KI270880v1_alt     216388 100 +    284869 gagtttcactcttgtcacccaggctggagtgcaacggtgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcttc
s panTro5.chrX                 401806 100 + 155549662 gagtttcactcttgtcgcccaggctggagtgcaacggtgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcttc
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 136209 100 + 149150640 gagtttcactcttgttgcccaggctggagtgcagtggtgcgatctcggctcactgaaacctccgcctcccgggttcaagcgattctcctgcctcagcctc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137         3834 100 -     20017 gagtttcactcttgttgcccaggctggagtgcagtggcgcgatcttggctcactgaaacctccgcctcccgggttcaagcgattctcctgcctcagcctc
i macFas5.chrUn_KE146137       C 0 C 0
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e macNem1.NW_012017243v1       378663   0 +  25972781 C
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=378599.000000
s hg38.chrX_KI270880v1_alt     216488 493 +    284869 ccgagtagctgagactacagacgcccgccaccatgcccggctaatttttattatttagtatttttattttttagtattcttagtatttttattattcagtatttt-----tagtagagccgggg-tttcaccacattggcaaggctggtctcgaactcctgacctccggtgatccacccacctcggcctcccaaaatgctgggattacaggcgtgagccgccatgccc-ggccgaaattggtattatttttaaaaaccacccggccatATATA-AaagccaaaagaatgctaacaagaactcccataaacccaccacttggcatcaataatcagcattttgccagtttattctgtttttttattgtcattttaagacaggtttccaccatgttgcccaggctggtctcGA-ACCCCTGGGCTCAAGGGATCCTCCTGCCTCAGCCTCCCAACATGCT-GGGATTACAGACATGAGCCACTGTGCCTGGCTAGCATTGTGCCtt
s panTro5.chrX                 401906 450 + 155549662 ccgagtagctgagattacagacgcccgccaccatgcctggctaatttttattatttagtatttttattttttactattcttagtatttttattattcagtatttt-----tagtagagccgggg-tttcaccacattggcaaggctggtctcgaactcctgacctccggtgatccacccacctcggcctcccaaaatgctgggattacaggcgtgagccgccatgcct-ggccGAAATTGGTATTATTTTTAAAAACCACCCGGCcatatata-aaagccaaaagaacgctaacaagaactcccataaacccaccacctggcatcaataatcagcattttgccagtttATTct-------------------------------------------caggctggtctcga-actcctgggctcaagggatcctcctgcctcagcctcccaacatgct-gggattacagacatgagccactgtgcctggcTAGCATTGTGCCtt
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 136309 483 + 149150640 ccgagtagctgggataacagatgcctgccaccacgccaggctaatttttattatttagtatttttatttt---------ttagtattttcattatttagtatttt-----tagtagagacgggg-tttcaccacattggccaggctggtctcgaactcctgacctccggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccacgccc-ggcTGAAATTGGTATTGTTTTTAAAAACCACCCAGCcatatata-aaagccaaaagaacgctaacaagaactcccgtaaacccaccacctggcttcagtaattagcattgtgccagtttATTCT-Gtttttgattttcatgttaagacaggttttcacctcgttgcccaggctggtctcga-gctcctgggctcaagggatcctcctgcctcagcctcctaacgtgct-gggattacagacatgagccactgtgcctggcTAACATTGAGCCTT
i rheMac8.chrX                 C 0 I 19
s macFas5.chrUn_KE146137         3934 483 -     20017 ccgagtagctgggataacagatgcctgccaccacgccaggctaatttttattatttagtatttttatttt---------ttagtattttcattatttagtatttt-----tagtagagacgggg-tttcaccacattggccaggctggtctcgaactcctgacctccggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccacgccc-ggctgaaattggtattgtttttaAAAACCACCCAGCCATATATA-AAAGCCAAAAGAACGCTAACAAGAACTCCCGTAAACCCACCACCTGGCTTCAGTAATTAGCATTGTGCCAGTTTATTCT-Gtttttgattttcatgttaagacaggttttcacctcgttgcccaggctggtctcga-gctcctgggctcaagggatcctcctgcctcagcctcctaacgtgct-gggattacagacatgagccactgtgcctggcTAACATTGAGCCTT
i macFas5.chrUn_KE146137       C 0 I 19
s macNem1.NW_012017243v1       378663 487 +  25972781 ccgagtagctgggataacagattcctgccaccacgccaggctaatttttattatttagtatttttatttt---------ttagtattttcattatttagtattttatagatag--gagacgaggttttcaccacattggccaggctggtctcgaactcctgacctccggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccaagcccggGCTGAAATTGGTATTGTTTTTAAAAACCACCCAGCC-TATATATAAAGCCAAAAGAACGCTAACAAGAACTCCCGT-AACCCACCACCTGGCTTCAGTAATTAGCATTGTGCCAGTTTATTCT-Gtttttga-tttcatgttaagacaggttttcacctcgttg-ccaggctggtctcgaggctcctgggctcaagggatcctcctgcctcagcctcctaacgtgctggggattacagacatgagccactgtgcctggcTAACATTGAGCCtt
i macNem1.NW_012017243v1       C 0 I 17
e manLeu1.NW_012108508v1       219894 494 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=202501.000000
s hg38.chrX_KI270880v1_alt     216981 207 +    284869 ttttttttttt----------gaggtggagtcttgctttgttgcccagactggagttcagtggcacgatcccggctcactgcaacctccacctccagggttcaactgattctcctgcctccacctcccaggttcaagtgattctcctgcctcagcctccctactagctgggattacaggcacctggcaccgtgcctggctaatttttgtatttttag
s panTro5.chrX                 402356 217 + 155549662 tttttttttttttttttttttgaggtggagtcttgctttgttgcccagactggagttcagtggcacgatcccgactcactgcaacctccacctccagggttcaactgattctcctgcctccacctcccaggttcaagtgattctcctgcctcagcctccctactagctgggattacaggcacctagcaccatgcctggctaatttttgtatttttag
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 136811 175 + 149150640 ttttttttttt----------gaggcggagtctcgctttgtcgcccagactggagttcagtggcacgatcccggctcactgcaacctccgcct--------------------------------cccaggttcaagtgattctccttcctcagcctcctgagtagctgggataacaggcacctggcaccactcctggctaatttttgtatttttag
i rheMac8.chrX                 I 19 C 0
s macFas5.chrUn_KE146137         4436 175 -     20017 ttttttttttt----------gaggcggagtctcgctttgttgcccagactggagttcagtggcatgatcccggctcactgcaacctccgcct--------------------------------cccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacctggcaccactcctggctaatttttgtatttttag
i macFas5.chrUn_KE146137       I 19 C 0
s macNem1.NW_012017243v1       379167 171 +  25972781 ttttttttttt----------GA-Gcggagtctcgctttgtcgcccagactggagttcagt-gcacgatcccggctcactgcaacctccgcctc-------------------------------cccaggttcaagttattctcctgcctcagcct-ctgagtagctggg-ttacaggcacctggcaccactcctggctaa-ttttgtatttttag
i macNem1.NW_012017243v1       I 17 C 0
s manLeu1.NW_012108508v1       220388 175 -    350446 ttttttttttt----------gaggcggagtcttgctttgtcacccagactggagttcagtggcacgatctcggctcactgcaacctccgcct--------------------------------tccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacacccggctaatttgtgtatttttag
i manLeu1.NW_012108508v1       I 494 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       250499 250 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=234493.000000
s hg38.chrX_KI270880v1_alt     217188 145 +    284869 tagagacggggtttctccatgttggccaggct-ggtctcgaactcctgacctcagttgatcctaccgcctcggcctccc-aatgtgctgggattacagatgtgagccactgtccctggccAGCATTGTGCCATTTATATATATATAT
s panTro5.chrX                 402573 143 + 155549662 tagagacggggtttcaccatgttggccaggct-ggtctcgaactcctgacctcagttgatcctcccgcctcggcctccc-aatgtgctgggattacagatgtgagccaccgtccctggccAGCATTGTGCCATTTATATATATAT--
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 136986 145 + 149150640 tagagacggggtttcaccatattggccaggct-ggtctcgaactcctgacctcaggtgatcctcccacctcagcctccc-aatgtgctgggattacaggtgtgagccaccgcgcctggccAGCATTGTGCCATTTATATGTGTGTAT
i rheMac8.chrX                 C 0 I 14
s macFas5.chrUn_KE146137         4611 145 -     20017 tagagacggggtttcaccatattggccaggct-ggtctcgaactcctgacctcaggtgatcctcccacctcagcctccc-aatgtgctgggattacaggtgtgagccaccgcgcctggccAGCATTGTGCCATTtatatatatatat
i macFas5.chrUn_KE146137       C 0 I 38
s macNem1.NW_012017243v1       379338 143 +  25972781 ta-agac-gggtttcaccatattggccaggctcggtctcgaactcctgacctcaggtgatcctcccacctcagcctcccaaatgtgctgggatgacaggtgtg-gccaccgcg-cTGGCCAGCATTGTGCCAGTTATATATATATAC
i macNem1.NW_012017243v1       C 0 I 40
s cerAty1.NW_012001098v1       250749 145 -   1025902 tagagacggggtttcaccacgttggccaggct-ggtctcgaactcctgacctcaggtgatccacctgcctcagcctccc-aatgtgctaggattacagatgtgagccacggcacccggccAGCATTTTGCCATTTATATATATACAC
i cerAty1.NW_012001098v1       I 250 C 0
s manLeu1.NW_012108508v1       220563 145 -    350446 tagagacggggtttcaccgtgttggccaggct-ggtctcgaactcctgacctcaggtgatccacctgcctcagcttccc-aatgtgctaggattacaggtgtgagccacggcacccggccAGCATTTTGCCATTTATATATACACAC
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=26915.000000
s hg38.chrX_KI270880v1_alt     217333 25 +    284869 ATGTTGTGTGTGTATCCACCTATAT
s panTro5.chrX                 402716 23 + 155549662 --GTTGTGTGTGTATCCACCTATAT
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 137145 25 + 149150640 ACGTTGTGTGTGTATTCACCGATAT
i rheMac8.chrX                 I 14 C 0
s macFas5.chrUn_KE146137         4794 25 -     20017 ACGTTGTGTGTGTATTCACCGATAT
i macFas5.chrUn_KE146137       I 38 C 0
s cerAty1.NW_012001098v1       250894 23 -   1025902 --TTTGTGTGTGTATCCATCTATAT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       220708 23 -    350446 --TTTGTGTGTGTATCCATCTATAT
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e macNem1.NW_012017243v1       379481 40 +  25972781 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=225315.000000
s hg38.chrX_KI270880v1_alt     217358 157 +    284869 GCCCATATAAATAAATGAGCTAAATATATAAACAACTAATTTATTTACCCATTGAAATG-ATATTAAA-TAT-ACCTATCTATATACATGAA-TAAGAGA--CATATATTAAACAAATATTTTTTAAAAAAACATAtttcttttctttctctttctttctttt
s panTro5.chrX                 402739 153 + 155549662 ACCCATATAAATAAATGAGCTGAATATATAAACAACTAATTTATTTACCCATTGAAATG-ATATTAAA-TAT-ACCTATCTATATACATGAA-TAAGATA--CATATATTAAACAAATATTTTTTTAAAAAACATAtttcttttctt--tctttctttctt--
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 137170 156 + 149150640 GCCCATATAAATAAATGAGCTAAATATATAAACAAGTAATTTATTTACCCATTGAAATG-ATATTAAA-TAT-ACCTATCTATACACATGAA-TAAGAGA--CATATATTAAGCAAGTATTTTTT-AAAAAACAGATTTCTTTtccctccctccctccatctc
i rheMac8.chrX                 C 0 I 35
s macFas5.chrUn_KE146137         4819 156 -     20017 GCCCATataaataaatgagctaaatatataaacaagtaaTTTATTTACCCATTGAAATG-ATATTAAA-TAT-ACCTATCTATACACATGAA-TAAGAGA--CATATATTAAGCAAGTATTTTTT-AAAAAACAGATTTCTTTtccctccctccctccctctc
i macFas5.chrUn_KE146137       C 0 I 31
s macNem1.NW_012017243v1       379521 154 +  25972781 GCCCATATAAATAAATGAGCTAAATATATAAACAAGTAATTTATTTA--CATTGAAATGAATATTAAACTATGACCTATCTATACACATGAATTAAGATGATCATATATTAAGCAATTATTTTT-----AAACAGATTtcttttcc--tcctcccctcctctc
i macNem1.NW_012017243v1       I 40 I 32
s cerAty1.NW_012001098v1       250917 157 -   1025902 GCTCATATAAATAAATGAGTTAAATATATAAACAACTAGTTTCTTTGCCCATTGAAATG-ATATTAAAATAT-ACCTATCTATACACATGAA-TAAGAGA--CATATATTAAGCAAGTATTTTTT-AAAAAACAGAtttcttttctttttctttctttctttt
i cerAty1.NW_012001098v1       C 0 I 8171
s manLeu1.NW_012108508v1       220731 157 -    350446 GCTCATATAAATAAATGAGTTAAATATATAAACAACTAGTTTATTTGCCCATTAAAATG-ATATTAAAATAT-ACCTATCTATACACATGAA-TAAGAGA--CATATATTAAGCAAGTATTTTTT-TAAAAACAGAtttcttttctttttctttctttctttt
i manLeu1.NW_012108508v1       C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=17982.000000
s hg38.chrX_KI270880v1_alt     217515  94 +    284869 ttctctttctctccttctctctctttcctttctttct--------------------------------------------------------------ctttctttctttctttctttctttctttctttctttctttct-----------ttctttctttctttc
s panTro5.chrX                 402892   2 + 155549662 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------tc
i panTro5.chrX                 C 0 C 0
s rheMac8.chrX                 137361 163 + 149150640 ccttccttccttccttcttctttctttctttctttctttctttctttctttcttt----ctttctttctttctgtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctttcCtcttttc
i rheMac8.chrX                 I 35 I 10
s macFas5.chrUn_KE146137         5006 167 -     20017 ccttccttccttccttctttcttctttctttctttctttctttctttctttctttctttctttctttctttctgtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctttcCTCttttc
i macFas5.chrUn_KE146137       I 31 I 9
s macNem1.NW_012017243v1       379707 103 +  25972781 ccttccttccttccttctctcctcctccttccttccttctctcctt------------------------------------------------------cttctttctttctttctctc-ttctctcttctcttcttctt---------tcttctttcctcttttc
i macNem1.NW_012017243v1       I 32 I 5
s manLeu1.NW_012108508v1       220888  59 -    350446 ---------------------------------------------------------------------------------------------------cttttccccttccttccttccttccttccttccttccttctt---------tcttctttcctcttttc
i manLeu1.NW_012108508v1       C 0 I 6
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e gorGor5.CYUI01015925v1       287660 753 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=453150.000000
s hg38.chrX_KI270880v1_alt     217609 282 +    284869 tttctttctttTatggagtctcactc-tgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgcacgcgaccaa-gcccagccaatttttgtatttttagtagagactgggtttcaccgtgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccg
s panTro5.chrX                 402894 281 + 155549662 tttctttTTTTTatggagtctcactcttgtcacccacgctggagtgcaatggtgtgatctcagctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgcacaccatcac-gcctagctaatttttgtatttttagtagaggtggggtttcatcatgttggccaggctggtctcaaactcccgacctc--gtgatctgcccgcttcagcctctgaaagtgctgggatcacaggcatgagccaccg
i panTro5.chrX                 C 0 I 2420
s gorGor5.CYUI01015925v1       288413 282 +    417917 tttctttcttttatggagtctcactc-tgtcacccaggctggagtgcagtggcatgatctcagctcagtgcaacctccacctcccgggttcaagcgattctcctgcgtcagcctcctgagttgctgggattacaggtgctcaccatcacggcctagctaatttttgtatttttactagagactgggtttcaccgtgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggtgtgag-caccg
i gorGor5.CYUI01015925v1       I 753 C 0
s rheMac8.chrX                 137534 282 + 149150640 tttttttttttgatggagtcttgctg-tattgcccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcgcccatcaccac-gcccggctaatttttgtatttttagtagaggcggggtttcaccgtgttggccaggctggtctcgaactcccaacctgaagtgatccgcctgcttcggccgcccaaagtgctggaatgacaggcgggagccaccg
i rheMac8.chrX                 I 10 C 0
s macFas5.chrUn_KE146137         5182 282 -     20017 tttttttttttgatggagtcttgctg-tattgcccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcgcccatcaccac-gcccggctaatttttgtatttttagtagaggcggggtttcaccgtgttggccaggctggtctcgaactcccaacctgaagtgatccgcctgcttcggccgcccaaagtgctggaatgacaggcgggagccaccg
i macFas5.chrUn_KE146137       I 9 C 0
s macNem1.NW_012017243v1       379815 278 +  25972781 ttttttttattgatggaat-ttgctg-tattgcccaggctggagtgcagtgggatgatctcggctcactgcaacctccgcctcctgggttcaagtg-ttctcctg--tcagcctcctgagtagctgggattacaggcgcccatcaccac-gcccggctaatttttgtatttttagtagaggcggggtttcaccgtgttggccaggctggtctcgaactcccaacctgaagtgatccgcctgcttcggccgcccaaagtgctggaatgacaggcgggagccactg
i macNem1.NW_012017243v1       I 5 C 0
s manLeu1.NW_012108508v1       220953 281 -    350446 -ttttgtttttgatggagtcttgctg-tattgcccaggctggagtgcagtgatgagatctcagctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccaccac-gcctggctaatttttgtatttttattagagacggggtttcaccgtgttggccaggctggtctcgaactcccaacctgaagtgatccgcctgcttcggcctcccaacgtgctggaatgacaggcgggagccaccg
i manLeu1.NW_012108508v1       I 6 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=149836.000000
s hg38.chrX_KI270880v1_alt     217891 129 +    284869 tgcccggccAAAAACAGGTTTTCTAAGTAAGTTGTATATACAACATTTTACCCACCCTACAGTAGCACTCATATTCTGAaaataagtcttctttcataatacagtattattttcacacatcagaagatt
s gorGor5.CYUI01015925v1       288695 129 +    417917 tgcccggccAAAAACAGGTTTTCTAAGTATGTTGTATATACAACATTTTACCCACCCTACAGTAGCACCCATATTCTGAAAATAAGTCTTCTTTCATAATACAATATTATTTTCACACATCAGAAGATT
i gorGor5.CYUI01015925v1       C 0 I 3093
s rheMac8.chrX                 137816 127 + 149150640 tgcccggccAAAAACAAGTTTGTCAA-TACGTTGCATATACAACTTTTTACCCACCGTATAGTGGCACCCACCTTCTGAAAATAAGTCTTTTTTCATAATA-AATATGATTTTCACACATCAGAAGATT
i rheMac8.chrX                 C 0 I 4854
s macFas5.chrUn_KE146137         5464 127 -     20017 tgcccggccAAAAACAAGTTTGTCAA-TACGTTGCATATACAACTTTTTACCCACCGTATAGTGGCACCCACCTTCTGAAAATAAGTCTTTTTTCATAATA-AATATGATTTTCACACATCAGAAGATT
i macFas5.chrUn_KE146137       C 0 I 5366
s macNem1.NW_012017243v1       380093 127 +  25972781 tgcccggccAAAAACAAGTTTGTCAA-TACGTTGCATATACAACTTTTTACCCACCGTATAGTGGCACCCACCTTCTGAAAATAAGTCTTTTTTCATAATA-AATATGATTTTCACACATCAGAAGATT
i macNem1.NW_012017243v1       C 0 I 9906
s manLeu1.NW_012108508v1       221234 127 -    350446 cgcccggccAGAAACAAGTTTGTCAG-TACGTTGCATATACGACTTTTTACCCGCCCTATAGTGGCACCCACCTTCTGAAAATAAGTCTTTTTTCATAATA-AATATGATTTTCACACATCAGAAGATT
i manLeu1.NW_012108508v1       C 0 I 4275
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     218020 486 +    284869 ttttttcctctaagagacagagtcttgctctgcagcctcaacttcccgggttcaagcgatccacctcaacctcccgagtagctgggactacacgcatgcaccagcatgcccaggtaatttttaaactttttgtagagatagggtcttgctatgctgTccaggttggtcttgaagaaagaaagaaggaaggaaagaaagaaagagagagaaaggaaagaaagagaaagagagagaggaaagagaaagaaagaaagaaagaaaagagagagaggaaagaaagaaacagaaaggggaaagagaaagaaagaagaaagaaagaaaggaaggaagaagaaaaaagaaagaaaagagagaggaaagaaagaaacaaaaagagagaggaaagagaaagaaagaaagaaagagaaagaaagaaacaaaaagaaagaaagaaaagaaagaaagaaagaaaagaaagaaagaaagagaaaggaaggaagaagaaaa
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 137943 4854 + 149150640 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I
e macFas5.chrUn_KE146137         5591 5366 -     20017 I
e gorGor5.CYUI01015925v1       288824 3093 +    417917 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=5357.000000
s hg38.chrX_KI270880v1_alt     218506 79 +    284869 aagaaagaaaagagagagaggaaagaaagaaacaaaaagagagaggaaagagaaagaaagaaagaaagaaagagaaaga
s gorGor5.CYUI01015925v1       291917 73 +    417917 aagaaagaaaag-gagagaggaaagaaagaaa----gagagagaggaaagagaaagaaagaa-gaaagaaagagaaaga
i gorGor5.CYUI01015925v1       I 3093 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 137943 4854 + 149150640 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I
e macFas5.chrUn_KE146137         5591 5366 -     20017 I
e panPan2.chrUn_NW_014024190v1 128392 1958 -    177848 I

a score=227625.000000
s hg38.chrX_KI270880v1_alt     218585 1030 +    284869 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaagaTCCCAAGCTGGCAAGCGGCAAGACACT-CCCAGACTGTGCCAGGATAAGAGAGAAAGAGTC----TTTGTGTTTTATTTTTGGAGACAAAGtggagtgcagtggtgcgatctcagctcacctccgcctcccgggttcacgtcattctcctgcctcggcctcccgagtagctgggataacaggtgcccaccaccacgcctggctctttttgtatttttagtaga------------------------------------------------------------caaggggtttcaccatgttggccaggctggtctcgaactcctgacctgaagagatctgcttgctttggcctcccgaagtgttgggattacaagtgtgagccacggcacctggctttttttttttttttttttttttcaatagatacagggtcttgctctgttgcccaggctggagt-gccgtagtccagtcataggtcactg-cagcctc-aaactcttgggcttaagctatcctttcagctcagcctcctgagtagctggaaatacaggtgcgtgtgccaccacgcttgaataattttcattttaatttttgtagacaca-gggtcatggtatgttgcccaggctggtcttg--aactcctagcctcaagcaatcctcccacggcggcctcccagagtgatgggattacaggtgtgagccaacgtgcctggtcTTGTCCTAGAATTCGGAGGCATCC-TGCAGCCCGTAGCAAGTCTAAATGA-CTTTTACCATGTTCTCCCTCTTCCCGGCTCCCCTCATCCCAGGTTACAGGCTTATATCAAAGCGTCCAACTGTTGGCAAAACATCAATTTGCATTTTTCA-GACATCCAGGGCCAACGTGCTGCACCTGCCTTCTATTCCCAGACAGGAACTCGGAACGTAGGTGGCTGTTTACATATTTGA-CCGTGCGAGAGGCAGGTACCTGGAAACGTCCGTAGGTGGAGGATAAGGGGAGACATTCTGCTTCCTGAATGTCATGGATGGG
s panPan2.chrUn_NW_014024190v1 130350 1022 -    177848 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaTTCCAAGCTGGCAAGCGGCAAGACACT-CCCAGACTGTGCCAGGATAAGAGAGAAAGAGTC----TTTGTGTTTTATTTTTGGAGACAAAGtggagtgcagtggtgcgatctcggctcacctctgcctcctgggttcacgtcattctcctgcctcggcctcccgagtagctgcgataacaggtgcccaccaccacacccggctgtttttgtatttttagtagattacagg-----------cacctgccaccacgccctgctaatttttgtatttttagtagacaaggggtttcaccatgttggccaggctggtctcgaactcctgacctgaagagatctgcttgctttggcctcccgaagtgttgggattacgggtgtgagccacggcacctgg------tcttttttttttttttttaaacagatacagggtcttgctctgttgcccatgctggagt------------------------------------------------------atcctttcagctcagcctcctgagtcgctggaaatacaggtgcgtgtgccaccacgcttgaataattttcattttaatttttgtagacaca-gggtcatggtatgttgcccaggctggtcttg--aagtccgagcctcaagcaatcctcccacggcggcctcccagagtgatgggattacaggtgtgagccaccgtgcctggtcTTGTCCTAGAATTTGGAGGCATCC-TGCAGCCCGTAGCAAGTCTAAATGG-CTTTTACCATGTTCTCCCTCTTCCCGGCTCCCCTCATCCCAGGTTACAAGCTTATATCAAAGCGTCCAACTGTTGGCAAAACATCAATTTGCATTTTTCA-GACATCCAGGGCCAACGTGCTGTACCTGCCTTCTATTCCCAGACAGGAACTCGGAACGTAGGTGGCTGTTTACATATTTGA-CCGTGCGAGAGGCAGGTACCTGGAAACGTCCGTAGGTGGAGGATAAGGAGAGACATTCTGCTTCCTGAATGTCATGGATGGG
i panPan2.chrUn_NW_014024190v1 I 1958 C 0
s gorGor5.CYUI01015925v1       291990 1055 +    417917 -----aaaaagaaagagaga---aaagacaagaagacag--agaaagaaaga-------aaagaaagaaagaTCCCAAGCTGGCAAGCGGCAAGAGACTCCCCAGACTGTGCCAGTATAAGAGAGAAAGAGTCTTGttttgtgttttatttttggagacaaagtggagtggagt-gtgcgatctcggctcacctctgcctcctgggttcacgtcattctcctgccttagcctcccgagtagctgggattacaggtgcccgccaccacgcccgctcttttttgtatttttagta-attacaggtgttgccacca------------tgccctgctaatttttgtatttttagtagacaaggggtttcaccat-ttggccaggctggtctcgaactcctgacctgaagagatctgcttgctttggcctcccgaagtg-tgggattac-ggtgtgagccaccgtacctgg---------ctttcttttttttttaaacagataca-ggtcttgctctgttgcccaggctggagttgccgtcgtccagtcataggtcactgccagcctcaaaactctcaggcttaagctatcctttcagctcagcctcctgagtcgctggaaatacaggtgcctgtgccaccacgcttgaataattttcattttaatttttgtagacacaggggtcatgctatgttgcccaggctggtcttgaaaactcctagcctcaagcaatcctcccacagcggcctcccacagt-atgggattacaggtgtgagccaccgtgcctggtc-TGTCCTAGGACTCTGAGGCATCCTTGCAGCCCGTAGCAAGTCTAAACGGACTTTTAGCTTGTTCTCCCTCTTCCCGGCTCCCCTCATCCCAGGTTACAGGCTTATATCAAGGCGTCCAACTGTTGGCAAAACATCAATTTGCATTTTTCAGGACATCCAGGGCC-ACGTGCTGTACCTGCCTTCTATTCCCAGACAGGAACTCGGAACGTAGG-GGCTG-TTACATATTTGATCCGTGCGAGATGCAGGTACCTGGAAACGTCCGTAGGTGGAGGATAAGGGGAGACATTCTGCTTCCTGAATGTCATGGAT-GG
i gorGor5.CYUI01015925v1       C 0 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224  207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e cerAty1.NW_012001098v1       251074 8171 -   1025902 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 137943 4854 + 149150640 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I
e macFas5.chrUn_KE146137         5591 5366 -     20017 I

a score=36369.000000
s hg38.chrX_KI270880v1_alt     219615 98 +    284869 AAGACACACATCCCAGCCCCTGTGGGGGAGGC-TCAGAGTGTCCCTCAACAAACAGGGTCAATTTGTGAGGAAAGAGGG-CCGTTGAAAGCTCTGTGATT
s panPan2.chrUn_NW_014024190v1 131372 99 -    177848 AAGACACACATCCCAGCCCCTGTGGGGGGGGCCTCAGAGTGTCCCTCAACAAACAGGGTCAATTTGCGAGGAAAGAGGG-CCGTTGAAAGCTCTGTGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293045 99 +    417917 AAGACACACATCCCAGCCCCTGTGCGGGGCCT-CCAGAGTGTCCCTTACAAAACAGGATCAACTTGTAAGGAAAGAGGGCCCGTTGAAAACTCTGTGATT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       259245 97 -   1025902 aaGAGACACATCTCAGCCCCTGTCGGGGGACC-TCAGAGTGTCCCTCGGCAAACAGG-TGATTTTTTGAGGCAAGAGAA-ACATTGAAAGCCCGTTGACT
i cerAty1.NW_012001098v1       I 8171 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e colAng1.NW_012115411v1       358503 5029 +   1230721 I
e rheMac8.chrX                 137943 4854 + 149150640 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I
e macFas5.chrUn_KE146137         5591 5366 -     20017 I

a score=4236.000000
s hg38.chrX_KI270880v1_alt     219713 3 +    284869 ggc
s panPan2.chrUn_NW_014024190v1 131471 3 -    177848 ggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293144 2 +    417917 -gc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 142797 3 + 149150640 ggc
i rheMac8.chrX                 I 4854 C 0
s macFas5.chrUn_KE146137        10957 3 -     20017 ggc
i macFas5.chrUn_KE146137       I 5366 C 0
s cerAty1.NW_012001098v1       259342 3 -   1025902 gga
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1       363532 3 +   1230721 ggc
i colAng1.NW_012115411v1       I 5029 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     196197 7357 -    811265 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I

a score=185678.000000
s hg38.chrX_KI270880v1_alt     219716 91 +    284869 cgggcacggtgg-ctcaggcccgtcatca-cagcactttgggaggccgagacgggtggattgcctgagg-tcaggagttc-gagaccagcctggc
s panPan2.chrUn_NW_014024190v1 131474 91 -    177848 cgggcgcggtgg-ctcaggcccgtcatcc-cagcactttgggaggccgagacgggtggattgcctgagg-tcaggagttc-gagaccagcctggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293146 91 +    417917 tgggcgcggtgg-ctca-gcctgtcatccgcagca-tttggagagccgagacgggtggattgcctgaggttcaggagttc-gagaccagcctggc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 142800 91 + 149150640 cgggcgcggtgg-ctcacgcctgtcatcc-cagcactttgggaggccgagacgggtggatcacctgagg-tcaggagttc-aagaccagcctggc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        10960 91 -     20017 cgggcgcggtgg-ctcacgcctgtcatcc-cagcactttgggaggccgagacgggtggatcacctgagg-tcaggagttc-aagaccagcctggc
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       259345 91 -   1025902 cgggcacggtggtctcacgcctgtcat-c-cagc-ctttgggaggccgagacgggtggatcacctgagg-tcaggagttcaaagaccagcctggc
i cerAty1.NW_012001098v1       C 0 I 262
s chlSab2.chrUn_KE147541v1     203554 89 -    811265 cgggcgcggtgg-ctcacatctgtcatcc-cagtactttgggaggccgaggcgggtggatcac--gagg-tcaggagttc-aagaccagcctggc
i chlSab2.chrUn_KE147541v1     I 7357 C 0
s colAng1.NW_012115411v1       363535 89 +   1230721 cgggcgcggcgg-ctcacgcctgtcatcc-cagcactttgggaggccgagacgggcggatctg--gagg-tcaagagatc-gagaccagcctggc
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I

a score=247012.000000
s hg38.chrX_KI270880v1_alt     219807 168 +    284869 cagcat--agtgaaaccccgtctctactaaaaatgcaaaaaaaattagctgggcttggtggctggtg---------ccag-ctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatc-catccattgcactccagcctgggtgacaggg
s panPan2.chrUn_NW_014024190v1 131565 168 -    177848 cagcat--agtgaaaccccgtctctactaaaaatgcaaaaaaaattagctgggcgtggtggctggtg---------ccag-ctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagcagagatc-catccattgcactccagcctgggcgacaggg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293237 168 +    417917 cagcattatgtgaaaccctgtctctactaaaaacacacaaaaaattagct-ggcgtgct-gctggtg---------ccagcctactcaggaggctgaggcaggagaatcgcttgaacc-gcgaggcggaggttgcagtgagccgagatc-catccattgcactccagcctgggcgacaggg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 142891 173 + 149150640 caacat--gttgaaaccccgtctctact-aaaatac---aaaaattagccaggcgtggtggcgggtgcctgtcatcccag-cgactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatc-gatccattgcactccagcctgggagacagag
i rheMac8.chrX                 C 0 I 1
s macFas5.chrUn_KE146137        11051 173 -     20017 caacat--gttgaaaccccgtctctact-aaaatac---aaaaattagccgggcgtggtggcgggtgcctgtcatcccag-cgactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatc-gatccattgcactccagcctgggagacagag
i macFas5.chrUn_KE146137       C 0 I 1
s chlSab2.chrUn_KE147541v1     203643 176 -    811265 caacat--ggcaaaaccccgtctctagtaaaaatac--aaaaaattagccgggcgtggtgtgaggcacctgtaatcccag-ctactcaggaggctgaggcaggggaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcggatccattgcactccagcctgggcgacagag
i chlSab2.chrUn_KE147541v1     C 0 I 1
s colAng1.NW_012115411v1       363624 174 +   1230721 caacat--ggtgaaaccccgtctgtactaaaaatac---aaaaaatagccgggcgtcgtggcgggcgcctgtagtcccag-ctactcgggaggctgaggcaggagaatggcttgaacccgggagacggagcttgcagtgagctgagatc-cggccactgcactccagcctgggcggcagag
i colAng1.NW_012115411v1       C 0 I 14
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e cerAty1.NW_012001098v1       259436 262 -   1025902 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I

a score=5248.000000
s hg38.chrX_KI270880v1_alt     219975 13 +    284869 acgacattccaga
s panPan2.chrUn_NW_014024190v1 131733 11 -    177848 acgacattcca--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293405 12 +    417917 gcgacattccg-c
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143065 13 + 149150640 gagactctccatc
i rheMac8.chrX                 I 1 I 2
s macFas5.chrUn_KE146137        11225 13 -     20017 gagactttccatc
i macFas5.chrUn_KE146137       I 1 I 2
s chlSab2.chrUn_KE147541v1     203820 13 -    811265 aagactctccatc
i chlSab2.chrUn_KE147541v1     I 1 I 2
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e cerAty1.NW_012001098v1       259436 262 -   1025902 I
e colAng1.NW_012115411v1       363798 14 +   1230721 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I

a score=-387.000000
s hg38.chrX_KI270880v1_alt     219988 9 +    284869 aaaaaaaaa-
s gorGor5.CYUI01015925v1       293417 9 +    417917 ctcacaaaa-
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143080 7 + 149150640 --aaaaaaa-
i rheMac8.chrX                 I 2 C 0
s macFas5.chrUn_KE146137        11240 1 -     20017 --a-------
i macFas5.chrUn_KE146137       I 2 C 0
s chlSab2.chrUn_KE147541v1     203835 7 -    811265 --aaaaaaa-
i chlSab2.chrUn_KE147541v1     I 2 C 0
s colAng1.NW_012115411v1       363812 8 +   1230721 --aaaaaaaa
i colAng1.NW_012115411v1       I 14 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e cerAty1.NW_012001098v1       259436 262 -   1025902 I
e macNem1.NW_012017243v1       380220 9906 +  25972781 I
e panPan2.chrUn_NW_014024190v1 131744 0 -    177848 C

a score=33178.000000
s hg38.chrX_KI270880v1_alt     219997 19 +    284869 aaaaaaaaaaaaaaaaaaa
s panPan2.chrUn_NW_014024190v1 131744 13 -    177848 ------aaaaaaaaaaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293426 19 +    417917 aaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143087 13 + 149150640 ------aaaaaaaaaaaaa
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        11241 19 -     20017 aaaaaaaaaaaaaaaaaaa
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       390126 19 +  25972781 aaaaaaaaaaaaaaaaaaa
i macNem1.NW_012017243v1       I 9906 C 0
s chlSab2.chrUn_KE147541v1     203842 15 -    811265 ----aaaaaaaataaataa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       363820 19 +   1230721 aaaaaaaaaaaaaaaaaaa
i colAng1.NW_012115411v1       C 0 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             290826 3809 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e cerAty1.NW_012001098v1       259436 262 -   1025902 I

a score=98491.000000
s hg38.chrX_KI270880v1_alt     220016 49 +    284869 aaaGCTCTGCGATTTTTGCAAAACCGGGAAGGC-GGGGAACCCAGGCCTG
s panPan2.chrUn_NW_014024190v1 131757 49 -    177848 aaaGCTCTGCGATTTTTGCAAAACCGGGAAGGC-GGGGAACCCGGGCTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293445 48 +    417917 aaTGCTCTGCGATTTTTGCAAAAACCGGGAAGC-GGGGAACCCA-GCTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143100 48 + 149150640 aaaGGCCTGCAA-TTTTGCAAAACCCAGAAGGC-GTGCAACCCCGGCTTG
i rheMac8.chrX                 C 0 I 5
s macFas5.chrUn_KE146137        11260 48 -     20017 aaaGGCCTGCGA-TTTTGCAAAACCCAGGAGGC-GTGCAACCCCGGCTTG
i macFas5.chrUn_KE146137       C 0 I 5
s macNem1.NW_012017243v1       390145 48 +  25972781 aaaGGCCTGCGA-TTTTGCAAAACCCAGGAGGC-GTGTAACCCCGGCTTG
i macNem1.NW_012017243v1       C 0 I 5
s chlSab2.chrUn_KE147541v1     203857 48 -    811265 aaaGGTCTGTGA-TTTTTCAAAACCCAGAAGGC-GTGCAACCCCGGCTTG
i chlSab2.chrUn_KE147541v1     C 0 I 5
s colAng1.NW_012115411v1       363839 48 +   1230721 aaaGCCCTGCGA-TTTTGCAAAACCCGGAAGGC-GTGCAACCCGGGCTTG
i colAng1.NW_012115411v1       C 0 I 5
s otoGar3.GL873584             294635 49 +  11138919 AAAGCCCCGAGA-TTTAGGAAAACCTGGGCAGCAAAGAAACACGGGCTCG
i otoGar3.GL873584             I 3809 C 0
e manLeu1.NW_012108508v1       221361 4275 -    350446 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e cerAty1.NW_012001098v1       259436 262 -   1025902 I

a score=958089.000000
s hg38.chrX_KI270880v1_alt     220065 267 +    284869 ---TTTTAAAATAGT-CCACCTAAATTATAAGTATGGCTCGTGGTGTGTTTTCC-AAAGAAG-AACC-CTCCTTTAACGAGACCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTCCTGGTGGT-GTGGACATAGCCAG--GGGCTGGA-----GGTGGACCCCTCTGGATTTGTAGGTA--GGAAGCAAAGAAGGGGCAGGTCCACTGCTCACCGC--AGTTCCATATTTATGACGCGAGGACGCT-GGGGAAAGCAA---CGAGTGTGTCACA-AATGCGGTGAGGCCACC
s panPan2.chrUn_NW_014024190v1 131806 264 -    177848 ---TTTTAAAATAGT-CCACCTAAATTATAACTATGGCTCCTGGTGTGTTTTCC-AAAGAA----CC-CTCCTTTAACGAGACCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTCCTGGTGGT-GTGGACATAGCCAG--GGGCTGGA-----GGTGGACCCCTCTTGATTTGTAGGTA--GGAAGCAAAGAAGGGGCAGGTCCACTGCTGACCGC--AGTTCCATATTTATGACGCGTGCACGGT-GGGGAAAGCAA---CGAGTGTGTCGCA-AATGCGGTGAGGCCACC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293493 272 +    417917 ---TTTTAAAATAGT-CCCCCTAAATTATAACTATGGCTCGTGGTGTGTTTTCCAAAAGAAG-AACC-CTCCTTTAACGAGACCCCGCCTAGGGCCGGCTCGCTGTTGTAAATCTCCTGGTGGTCGTGGACATA-CAAGCAGGGCTGGA-----GGTGGAACCCTCTGGATTTGTAGGTA--GGAAGCAAAGAAGGGGCAGGTCCATTGCTCACCGC--AGTTCCATA-TTATGACGCGTGGACGCT-GGGAAAGGCAA---CGAGTGTGTCGCATAATGCGTTGAGGCCACC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143153 275 + 149150640 ---TTTTAAAATAGT-CCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAG-TACC-TTCCTGTAACGAGAGCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGAGCAAACACGGGGCAGGCCCGCCGTTCACCGCACAGTTCCATATTTATGACGCGTGGACGCT-GGGAACAGCAAGGACGACAGTGTCCCA-AATGCGGCGAGGCCACC
i rheMac8.chrX                 I 5 C 0
s macFas5.chrUn_KE146137        11313 276 -     20017 ---TTTTAAAATAGTCCCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAG-AACC-TTCCTGTAACGAGAGCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGAGCAAACACGGGGCAGGCCCGCCGTTCACCGCACAGTTCCATATTTATGACGCGTGGACGCT-GGGAACAGCAAGGACGACAGTGTCCCA-AATGCGGCGAGGCCACC
i macFas5.chrUn_KE146137       I 5 C 0
s macNem1.NW_012017243v1       390198 275 +  25972781 ---TTTTAAAATAGT-CCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAG-TACC-TTCCTGTAACGAGAGCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGAGCAAACACGGGGCAGGCCCGCCGTTCACCGCACAGTTCCATATTTATGACGGGTGGACGCT-GGGAACAGCAAGGACGACAGTGTCCCA-AATGCGGCGAGGCCACC
i macNem1.NW_012017243v1       I 5 C 0
s cerAty1.NW_012001098v1       259698 276 -   1025902 ---TTTTAAAATAGT-CCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAGAAACC-TTCCTGTAACGAGAGCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGAGCAAACACGGGGCAGGCCCGCCGTTCACCGCAGAGTTCCATATTTATGACGCGTGGACGCT-GGGAACAGCAAACAGGACAGTGTCCCA-AATGCGGCGAGGCCACC
i cerAty1.NW_012001098v1       I 262 C 0
s chlSab2.chrUn_KE147541v1     203910 276 -    811265 ---TTTTAAAATAGTCCCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAG-AACC-TTCCTGTAACGAGAGCCCGCCGA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGGGCAAACACGGGGCAGGCCCGCCGTTCACCGCAGAGTTCCATATTTATGACGCGTGGACGCT-GGGAAAAGCAAGGAGGACAGTGTCCCA-AATGCGGCGAGGCCGCC
i chlSab2.chrUn_KE147541v1     I 5 C 0
s manLeu1.NW_012108508v1       225636 275 -    350446 ---TTTTAAAATAGT-CCACGTAAATTATAATTATCGTTCTTCGTGTGTTTCCC-AAAGAAG-AACC-TTCCTGTAACGAGAGCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGCGGG--GGGCTGGA----GGGGGGAACCCTCTGGATTTGTGGGTAACGAGAGCAAACACGGGGCAGGCCCGCCGTTCACCGCAGAGTTCCATATTTATGACGCGTGGACGCT-GGGAACAGCAAGGAGGACAGTGTCCCA-AATGCGGCGAGGCCACC
i manLeu1.NW_012108508v1       I 4275 C 0
s colAng1.NW_012115411v1       363892 277 +   1230721 ---TTTTAAAATAGT-CCACCTCAATTATAATTATCGTTCCTTGTGTGTTTCCC-AGAGAAG-AACCTTTCCTGTAACGAGACCCCGCCTA-GGCCGGC-CGCTGTTGTAAATCTTCTCGTGGT-GTGGACATAGTGGG--GGGCTGGAGGAGGGGGGGACCCCTCCGGATTTGTGGGTAGCCA--GCAAACAGGGGGTGGGCCCGCCGTTCACCGC--AGTTCCATATTTACGACACGTGGACGCTGGGGAAAAGCAAGGGGGAGAGTGTCCCG-AATCCGGGGAGGCCACC
i colAng1.NW_012115411v1       I 5 I 125
s otoGar3.GL873584             294684 259 +  11138919 TTTTTGTTGCATGGA-ACGGCTAAATTATAAATCTATTTCATCATGCGTTTCCC-AAAGAAG-AAAG-TTTTTGTAAGGAGACCAGGCCTT-GGCTTGC-TGCTATTATAAATCTTCTCATGAT-GTGGACTTAGGAGA--AGGCGTTA------GGGGACCCTTCTGGATTTGCGGGTA--GGAAGCAAGCATTGGA-GGGTCCCCCGAACGCTGC--TGACCTGTATTTATGACGCGTGGAT--T-GCAAAGGGCC----------TGTGTCA-AATCCGGTGCCTCCACC
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=173603.000000
s hg38.chrX_KI270880v1_alt     220332 69 +    284869 ----GTT-C--ACCGTAT---------TTTACGCTCACGACTTGTTTTCTTTTCATTTATGTCCCGGTCGATGAAAACGAAACGT
s panPan2.chrUn_NW_014024190v1 132070 69 -    177848 ----GTT-C--ACTGTAT---------TTTACGCTCATGACCTGTTTTCTTTTCATTTATGTCCCGGTCGATGAAAACGAAACAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293765 58 +    417917 ----GTTCC--ACCATAT---------TTTATGCTCATGACTTGTTTTCTTTTCATTTATCTCCCGGTCAATG------------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143428 69 + 149150640 ----GTT-C--GCCGCAT---------TTTACGTTCCTGTGTTGTTTTCTTTTCATTTATCTCCTGGTGAAGGAAAACTAAACGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        11589 69 -     20017 ----GTT-C--GCCGGAT---------TTTACGTTCCTGTGTTGTTTTCTTTTCATTTATCTCCTGGTGAAGGAAAACTAAACGT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       390473 69 +  25972781 ----GTT-C--GCCGGAT---------TTTACGTTCCTGTGTTGTTTTCTTTTCATTTATCTCCTGGTGAAGGAAAACTAAACGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       259974 69 -   1025902 ----GTT-C--GCCGGAT---------TTTACGTTCCTCTGTTGTTTTCTTTTCATTTATCTCCTGGTGAAGGAAAACAAAACGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204186 69 -    811265 ----GTT-C--GCCGGAT---------TTTACGTTCCTCTGTTGTGTTCTTTTCATTGATCTCCTGGTGAAGGAAAACAAAACGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       225911 70 -    350446 ----GTT-C-GGGCGGAT---------TTTACGTTCCTCTGTGGTTTTCTTTTCATTTGTCTCCTGGTGAAGGAAAACAAAACGT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             294943 84 +  11138919 GCCCGTT-CCGGGCGGCTTGAGGTGGCTTGAGGCTCCTTCTTTGCTCTCTTTTAATTTATCTCCTGGTAAATGAAAACTAAACGA
i otoGar3.GL873584             C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       364169 125 +   1230721 I

a score=106522.000000
s hg38.chrX_KI270880v1_alt     220401 39 +    284869 ATTCCTTAAAAA----GAACACGCCTGATGCCAAAGAAAGG--CA
s panPan2.chrUn_NW_014024190v1 132139 39 -    177848 ATTCCTTAAAAC----GAACACGCCTGATGCCAAAGAAAGG--CA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293823 33 +    417917 --------AAAC----GAACACGCCTGATGCCAAAGAAAGGGCCA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143497 39 + 149150640 CTTCCTTACAAC----GAGCACGCTGGATGCCAAAGAAAGG--CA
i rheMac8.chrX                 C 0 I 1
s macFas5.chrUn_KE146137        11658 39 -     20017 CTTCCTTACAAC----GAGCACGCTGGATGCCAAAGAAAGG--CA
i macFas5.chrUn_KE146137       C 0 I 1
s macNem1.NW_012017243v1       390542 39 +  25972781 CTTCCTTACAAC----GAACACGCTGGATGCCAAAGAAAGG--CA
i macNem1.NW_012017243v1       C 0 I 10
s cerAty1.NW_012001098v1       260043 39 -   1025902 CTTCCTTACAAC----GAACGCGCTGGATGCCAAAGAAAGG--CA
i cerAty1.NW_012001098v1       C 0 I 4
s chlSab2.chrUn_KE147541v1     204255 39 -    811265 CTTCCTTACAAC----GAACACGCCGGATGCCAAAGAAAGG--CA
i chlSab2.chrUn_KE147541v1     C 0 I 4
s manLeu1.NW_012108508v1       225981 39 -    350446 TTTCCTTACAAC----GAACATGCTGGATACCAAAGAAAGG--CA
i manLeu1.NW_012108508v1       C 0 I 4
s otoGar3.GL873584             295027 30 +  11138919 ATTCCTTAAAAC----TAATACACTCGGTGCCAA-----------
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 349967 37 + 123869142 ATTCCTTGAAACCTAATAATACACTTTGTGCCAAGAA--------
i canFam3.chrX                 N 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       364169 125 +   1230721 I

a score=365.000000
s hg38.chrX_KI270880v1_alt     220440 6 +    284869 CACGAG
s panPan2.chrUn_NW_014024190v1 132178 6 -    177848 CACGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293856 6 +    417917 CACGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143537 4 + 149150640 --CTAG
i rheMac8.chrX                 I 1 I 5
s macFas5.chrUn_KE146137        11698 4 -     20017 --CTAG
i macFas5.chrUn_KE146137       I 1 I 5
s cerAty1.NW_012001098v1       260086 3 -   1025902 ---TAG
i cerAty1.NW_012001098v1       I 4 I 3
s chlSab2.chrUn_KE147541v1     204298 3 -    811265 ---TAG
i chlSab2.chrUn_KE147541v1     I 4 I 3
s manLeu1.NW_012108508v1       226024 3 -    350446 ---TAG
i manLeu1.NW_012108508v1       I 4 I 3
s otoGar3.GL873584             295057 1 +  11138919 -----G
i otoGar3.GL873584             C 0 I 4
s canFam3.chrX                 350004 6 + 123869142 TCCGAA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       364169 125 +   1230721 I
e macNem1.NW_012017243v1       390581 10 +  25972781 I

a score=74724.000000
s hg38.chrX_KI270880v1_alt     220446 37 +    284869 TGT-GGGCGTCCCAGGGTGCAGAGGGCT-GGCACTAGTT
s panPan2.chrUn_NW_014024190v1 132184 37 -    177848 TGT-GGGCGTCCCAGGGTGCAGAGGGCT-GGCACTAGTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293862 39 +    417917 TGTGGGGCGTCCCAGGGTGCAGAGGGCTGGGCACTAGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143546 28 + 149150640 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i rheMac8.chrX                 I 5 C 0
s macFas5.chrUn_KE146137        11707 28 -     20017 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i macFas5.chrUn_KE146137       I 5 C 0
s macNem1.NW_012017243v1       390591 28 +  25972781 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i macNem1.NW_012017243v1       I 10 C 0
s cerAty1.NW_012001098v1       260092 28 -   1025902 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i cerAty1.NW_012001098v1       I 3 C 0
s chlSab2.chrUn_KE147541v1     204304 28 -    811265 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i chlSab2.chrUn_KE147541v1     I 3 C 0
s manLeu1.NW_012108508v1       226030 28 -    350446 TGT-GGGCATCCC---------AGGGCT-GGCACTGATG
i manLeu1.NW_012108508v1       I 3 C 0
s otoGar3.GL873584             295062 25 +  11138919 TGT-GAG---GCC---------AAGGGT-GTGACCAATT
i otoGar3.GL873584             I 4 C 0
s canFam3.chrX                 350010 31 + 123869142 TGG-GGGGCGGCCAGG------AGAGGC-GGCACTAATT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       364169 125 +   1230721 I

a score=199482.000000
s hg38.chrX_KI270880v1_alt     220483 56 +    284869 ACCCTGGTGACTTTGCCGTGTCCCCTCTCATCCC---CA---GGATTGGACGTGCAAAGCGT
s panPan2.chrUn_NW_014024190v1 132221 56 -    177848 ACCCTGGTGACTTTGCCGTGTCCCCTCTCATCCC---CA---GGATTGGACGTGCAAAGCGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293901 56 +    417917 ACCCTGGTGACTTTGCCGTGTCCCCTCTCATCCC---CA---GGATTGCACGTGCAAAGCGT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143574 56 + 149150640 ACTCTGCTGACTTTGCCATCTCCCCTCTCACCCA---CA---GGGTCGGACGTGCACAACGT
i rheMac8.chrX                 C 0 I 1
s macFas5.chrUn_KE146137        11735 56 -     20017 ACTCTGCTGACTTTGCCATCTCCCCTCTCACCCA---CA---GGGTCGGACGTGCACAACGT
i macFas5.chrUn_KE146137       C 0 I 1
s macNem1.NW_012017243v1       390619 56 +  25972781 ACTCTGCTGACTTTGCCATCTCCCCTCTCACCCA---CA---GGGTCGGACGTGTACAGCGT
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       260120 56 -   1025902 ACCCTGGTGACTTTGCCATCTCCCCTCTCATCCA---CA---GGGTCGGACGTGCAAAGCGT
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1     204332 56 -    811265 ACTCCGGTGACTTTGGCGTCTCCCCTCTCACCCA---CA---GGGTCAGACGTGCAAAGCGT
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1       226058 56 -    350446 ACTCTGGTGACTTTGCCATCTCCCCTCTCATCCA---CA---GGGTCGGACGTGCAAAGCGT
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1       364294 56 +   1230721 ACTCTGGGGACTCTGCCATCTCCCCTCTCGTCCA---CA---GGGTCAGACGGGCAAAGCGT
i colAng1.NW_012115411v1       I 125 I 29
s otoGar3.GL873584             295087 55 +  11138919 ACTCCGGTGATTT----GTGGCGTCCCTGAGTCAGGGTG---GGATTGTGCCTAAGAAGTGT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 350041 55 + 123869142 ACTCGGCTGATTT----GTGGCATCCCTCACCCT---GAAACGCTTTGTGCGAAAAGAACAT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=56151.000000
s hg38.chrX_KI270880v1_alt     220539 24 +    284869 CAGTAGTTAAAAAACACGACCAGA
s panPan2.chrUn_NW_014024190v1 132277 24 -    177848 CAGTAGTTAAAAAACACGACCAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293957 24 +    417917 CAGTAGTTAAAAAACACGACCAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143631 24 + 149150640 CAGGACTTCAGAAACGCGACCAGA
i rheMac8.chrX                 I 1 C 0
s macFas5.chrUn_KE146137        11792 24 -     20017 CAGGACTTCAGAAACGCGACCAGA
i macFas5.chrUn_KE146137       I 1 C 0
s macNem1.NW_012017243v1       390676 24 +  25972781 CAGGACTTCAGAAACGCGACCAGA
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1       260177 23 -   1025902 CAGGACTT-AGAAACGCCACCAGA
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1     204389 24 -    811265 CAGGACTCCAGAAACGCGACCAGA
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1       226115 23 -    350446 CAGGACT-TAGAAACGCGACCAGA
i manLeu1.NW_012108508v1       I 1 C 0
s otoGar3.GL873584             295142 24 +  11138919 TAAAAATTTAGAAGGGGGAGAGAA
i otoGar3.GL873584             C 0 I 4
s canFam3.chrX                 350096 24 + 123869142 TAAAAAAAAACAAACACGCACACA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       364350 29 +   1230721 I

a score=1297200.000000
s hg38.chrX_KI270880v1_alt     220563 355 +    284869 CCGAAGAGA---------------AATGGGAACCACCCACCATTCTGGTGGGGCAGGGC--CTGCAGAAAATAAAGGAGAT--GTTCCACCCCGTGAGTCAACGTGG-CAGG--------G-TCCACGT--------TCCCAGGC--AGGG-TGGTGTCCA-----------GCCTCAGGGCCC--------------------AAGCCAGCGGAAGCGCTGCGCTCACTAAAGACG-CTCCGTTATGTCCTGTGGGTTTTGC-AGCCAGC---TTTATG--GAGGGCGGTTCTCCTCCTG--AACATCCGTGATGCTTTTTTT--CGGG-AAACCGCGGGGAACATTCCTCAGCAAAATTTGTGGCGTTGC--AAACTTTCCAGCCAAAGCCA------------TCAGTGG--TTTTCAG-CCCCATGC-ACTGTCCTCCCAGAGACGGG--TCTG
s panPan2.chrUn_NW_014024190v1 132301 367 -    177848 CCGAAGAGA---------------AATGGGAACCACCCACCATTCTGGTGGGGCAGGGC--CTGCAGAAAATAATGGTGAT--GTTCCACCCCGTGAGTCAACGTGG-CAGG--------G-TCCACGT--------TCCCAGGC--AGGG-TGGTGTCCA-----------GCCTCAGGGCCC--------------------AAGCCAGCGGAAGGGCTGGGCCCAGTAAAGACG-CTCCGTTATGTCCTGTGGGTTTTGC-AGCCAGC---TTTGCG--GAGGGCGGTTCTCCTACTG--AGCATCCGTGATGCTTTTTTT--CGGG-AAACCGCGGGGAACATTCCTCAGCAAAATTTGTGGCGTTGC--AAACTTTCCAGCCAAAGCCATCTGGGTGCAGTTCAGTGG--TTTTCAG-CCCCATGC-ACTGTCCTCCCAGAGACGGG--TCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       293981 367 +    417917 CCGAAGAGA---------------AAT-GGAACCACCCACCATTCTGGTGGG---GGGC--CTGCAGAAAATAAAGGAGAT--GTTCCACCCCGTGAGTCAACGTGG-CAGG--------GATCCACGT--------TCCCAGGC--AGGATTGGTGTCCA-----------GTCTCAGGGCCC--------------------AAGCCAGCGGAAGGGCTGGGCCCACTAAAGGCG-CTCCGTTACGTCCTGTGGGTTTTGC-AGCCAGC---TTTGCGT-GAGGGCGGTCCTCCTCCTGA-AACATCCGTGATGCTTTTTTT--CGGGAAAACCGCGGGGAACATTCCTCAGTGAAATTTGTGGGTTTGC--AAACTTTCCAGCCGAA-CCATCTGGGTGCAGTTCAGTGG--TTTTCAG--CCCATGCAACTGTCCTCCCAGATACAGG--TCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 143655 373 + 149150640 CCGAAAAGA---------------CGTGGGAACCAGCCACCGTTCTGGTGGGGCAGGGC--CTGTAGAAAATCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCGGGCAGAGGA-TGGATCCTA-----------GTCCCAGGGCCC--------------------AAGCCGGAGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCGGC---TTTGCG--GAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTGGGCTAAATTGGTAGCGTTGC--ATACTTTCCAGCCAAAGGCTTCTCGGTCCGGTTCAGCGG--TTTTTAGCCCCTGGGC-ACTGTCCTCCCGGAGACGAGACACTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        11816 373 -     20017 CCGAAAAGA---------------CGTGGGCACCAGCCACCGTTCTGGTGGGGCAGGGC--CTGTAGAAAATCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCCGGCAGAGGA-TGGAGCCCA-----------GTCCCAGGTCCC--------------------AAGCCGGAGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCGGC---TTTGCC--GAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTGGGCTAAATTGGTAGCGTTGC--ATACTTTCCAGCCAAAGGCTTCTCGGTCCGGTTCAGCGG--TTTTTAGCCCCTGGGC-ACTGTCCTCCCGGAGACGAGACACTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       390700 374 +  25972781 CCGAAAAGA---------------CGTGGGCACCAGCCACCGTTCTGGTGGGGCAGGGC--CTGTAGAAAATCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCCGGCAGAGGA-TGGAGCCCA-----------GTCCCAGGGCCC-------------------AAAGCCGGAGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCGGC---TCTGCG--GAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTGGGCTAAATTGGTAGCGTTGC--ATACTTTCCAGCCAAAGGCTTCTCGGTCCGGTTCAGCGG--TTTTTAGCCCCTGGGC-ACTGTCCTCCCGGAGACGAGACACTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260200 374 -   1025902 CCGAAAAGA---------------GATGGGAACCAGCCACCGTTCTGGTGGGGCAGGGC--CTGTAGAAAATCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCGGGCAGAGGA-TGGAGCCCA-----------GTCCCAGGGCCC-------------------AAAGCCGGCGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCAGC---TTTGCG--GAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTGGGCTAAATGTGTAGCGTTGC--ATACTTTCCAGCCAAAGGCTTCTCAGTCCGGTTCAGCGG--TTTTCAGTCCCTGTGC-ACTGTCCTCCCAGAGACGAGACACTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204413 373 -    811265 CCGAACAGA---------------CATGGGAACCAGACACCGTTCTGGTGGGGCAGGGC--CTGCAGAAAACCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCGGGCAGAGGA-TGGAGCCCA-----------GTGCCAGGGCCC--------------------AAGCCGGCGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCAGC---TTTGTGGAGAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTCAGCTAAATTGGTAGCGTTGC--ATACTTTCCAGCGAAAGGCTTCTCGGTCCGGTTCAGCGG--TTTTCAGCCCCTGTGC-TCTGTCCTCCCGGACACGGG--ACCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       226138 374 -    350446 CAGAAAAGA---------------GATGCGAACCAGCCACCGTTCTGGTGGGGCAGGGC--CTGTAGAAAATCATGCACAA--ATGCCACTCTGTGAATCCACGTGG-CAGG--------G-TCCACGT--------CCCCGGGCAGAGGA-TGGAGCCCA-----------GTCCCAGGGCCC-------------------AAAGCCGGCGGAAGGGCTGGGCTGTCTAGAGACG-CCACGTTCTGTCCTGTGGGTTTTGC-TACCAGC---TTTGCG--GAGGGCGGTTCTTCCACTGAGAAAATCCGTGATGCTTTTTT---CGGG-AAACCGCGGGGTGCATTCCTGGGCTAAATGTGTAGCGTTGC--ATACTTTCCAGCCAAAGGCTTCTCGGTCCGGTTCTGCGG--TTTTCAGTCCCTCTGC-TCTGTCCTCCCAGAGACGAGACACTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       364379 379 +   1230721 CCGAAAAGA---------------AATGGCAACCAGCCACCGTTCCGGTGGGGCAGGGC--CTGCAGAAAATACTGCACACATATGCCACCCTGGGAGTCCACGTGACCAGG--------G-TCCACGT--------CCCCGGGC--AGGA-TGGAGCCCA-----------GTCCCAGGGCCC--------------------AAGGCGACGGAAGGGCTGGGCTGTCTAGAGACGCCCCCGTTCTGCCCTGTGGGTTTTGC-GACCCGC---TTTGCG--GAGGGCGGTTCTCCCACTGAG-AAATCCGTGATGCTTTTTTTTCCGGG-AAACCGCGGAATGCATTCCTTAGCTAAATTTGTAGCGTGGCATATACTTTCCAGCCAAAGGCTTCTGGGTCCGGTTCGGTGGTTTTTTCAGCCCCTGTGC-GCTGCCCTCCCAGAGACGGG--ACTG
i colAng1.NW_012115411v1       I 29 C 0
s otoGar3.GL873584             295170 412 +  11138919 CAGAGGAGAGACAGAAATCGAGAGAATGGGAACCACCCACCGTTCTGTCTGGACACAAC--CCGCAGGAAAGAATGGCGTC--CTCCCACCC-ATGGGCCAGCCCTG-CCGG--------A-TCCACGT--------CCCTAAAACGGGAG-AGAGGCCCGTCCCCGCGGCCACCCCAGCGCCCCGCAGTCTG---GGGCCAGGAACCCTCCGGAAGGGCTGGGCTGCCCGCGGGC--CACAGCTGGGGCCTGTGTGTTCTGC-ACACGGCGGTTTTACG--GAGGGCGGGTCTCTCGCCA--ACCGTCCACCAGGCTTTTTT---CGGG-CGACCGCTAGA-ACATTCCTGTTCTAATTTTGTGGTGGTGC--AGACTTTCCAGCCCAGGACCTTTGAGTTCAGCGAAACAG--TTTTCATGCCACACGG-CCCGTCCAAGCGGAGGTGGG--CCTG
i otoGar3.GL873584             I 4 C 0
s canFam3.chrX                 350120 400 + 123869142 ---------------------CCCAAGGGGAACCTCCCGCCGCTGTGGTCGGGCGCAGCTGTCACAGAAAAGAATGGAGAG--CTCCC---------GGCCGCGTGG-CAGACGTGGGGCG-TCCACGTCTCCCCCACCCCGGGGGTGGGA-GGGAGTCCGGCCCGTCTCTGGCCTCAGCGCCC----TCCTGTCTGGGTTGGGAACCATCCGGAAGGGCCGGGCTTCCTGAGGACA-CACAGCTCTGCCCTGTGTGTTTTGCAAACCAGC---CTTGCG--GAGGGCGGATCTCGCGTCC--AGCGTCCATGATGCTTTTCT---CGGG-CAACCGCTAGGAACATTCCTGCCCTAATTCTGTGGCGGCGC--ATACTTTCCGGCCAAAACCCTTTGAACTCAGCTCAACGG--ATTGCATTCCGATACC-CGTTTTCTCCCAGAGGCGAG--CTCG
i canFam3.chrX                 C 0 I 13
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=26545.000000
s hg38.chrX_KI270880v1_alt     220918 6 +    284869 AAACGC
s panPan2.chrUn_NW_014024190v1 132668 6 -    177848 AAACGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294348 6 +    417917 AAACGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144028 6 + 149150640 AAACGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12189 6 -     20017 AAACGC
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       391074 6 +  25972781 AAACGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260574 6 -   1025902 AAACGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204786 6 -    811265 AAACGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       226512 6 -    350446 AAACGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       364758 6 +   1230721 AAACGC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             295582 6 +  11138919 GGGTGC
i otoGar3.GL873584             C 0 I 3
e canFam3.chrX                 350520 13 + 123869142 I
e saiBol1.JH378345             258224 207 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=123167.000000
s hg38.chrX_KI270880v1_alt     220924 36 +    284869 A----TCttcttttttgagacggagtctcgctctgtgg-cc
s panPan2.chrUn_NW_014024190v1 132674 39 -    177848 ATC-ttcttcttttttgagacggagtctcgctctgtgg-cc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294354 39 +    417917 ATC-tttttcttttttgagacggagtctcgctctgtgg-cc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144034 40 + 149150640 Atcttttttcttgttggagacagagtctcgctctgtgg-cc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12195 40 -     20017 ATCttttttcttgttggagacagagtctcgctctgtgg-cc
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       391080 40 +  25972781 ATCttttttcttgttggagacagagtctcgctctgtgg-cc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260580 32 -   1025902 ATCttttttcttgtttgagatggagtctcgct---------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204792 40 -    811265 ATCttttttctggtttgagacggagtctcgctctgcgg-cc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       226518 40 -    350446 Atcttttttcttgttggagacggagtctcgctctgtgg-cc
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       364764 40 +   1230721 A-CCtttttcttgttggagacggagtctggctctgtggccc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258431 34 +    465904 ----atattattattggagac--agcctggctctgtcg-cc
i saiBol1.JH378345             I 207 C 0
s otoGar3.GL873584             295591 36 +  11138919 ----GTCCACCCTATGGAAGAGACGTCTGGCTCTGCGT-CC
i otoGar3.GL873584             I 3 I 53
e canFam3.chrX                 350520 13 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=231928.000000
s hg38.chrX_KI270880v1_alt     220960 61 +    284869 caggct-gcaatgcagtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagc
s panPan2.chrUn_NW_014024190v1 132713 61 -    177848 caggct-ggactgcggttatgccatctcggctcactgcaacctccgcctcccgggttgaatc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294393 62 +    417917 cggcctgggactgcgttattgccgtctcggctcactgcaacctccgcctcctgggttcaagc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144074 61 + 149150640 caggct-ggactgtggctgtgtgatctcggctcatggcaacctccgcctcccgggttcgagc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12235 61 -     20017 caggct-ggactgtggctgtgtgatctcggctcacggcaacctccgcctcccgggttcgagc
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       391120 61 +  25972781 caggct-ggactgtggctgtgtgatctcggctcacggcaacctccgcctcccgggttcgagc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260612 52 -   1025902 ----------ctgtgactgtgtgatctcggctcactgcaacctccgcctcccgggttcgagc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204832 61 -    811265 caggct-ggactgtggctgtgtgatctcggctcactgcaacctccgcctcccgggttcgagc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       226558 61 -    350446 caggct-ggactgtggctgtgtgatctcggctcactgcaacctccgcctcccgggttcaagc
i manLeu1.NW_012108508v1       C 0 I 3559
s colAng1.NW_012115411v1       364804 61 +   1230721 caggct-ggagtgtggctgtgcgatctctgctcactgcaacctccgcctcccgggttcaagc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258465 61 +    465904 cagggt-gcagggcagtggcgtgatcccagctcaccgcagcctccacctcccgggttcaagg
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350520 13 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627 53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=134494.000000
s hg38.chrX_KI270880v1_alt     221021 61 +    284869 gattctcctgcct-cagcctcctgagtagctgggat-gacagacgcccg-ccaccatgcctggg
s panPan2.chrUn_NW_014024190v1 132774 61 -    177848 gattctcctgcct-tagcctcctgagtagctgggat-gacagacgcccg-ccaccgtgcctggg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294455 63 +    417917 gattctcctgcctccagcctcctgagtagctgggatggacagacgcccg-ccaccacgcctggg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144135 61 + 149150640 cattctcctgcct-cagcctcccgagtagctgggat-gacaggtgcacg-ccacctcgcccggc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12296 61 -     20017 cattctcctgcct-cagcctcccgagtagctgggat-gacaggtgcaca-ccacctcgcccggc
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       391181 63 +  25972781 cattctcctgcct-cagcctcccgaggagctgggatggacaggtgcacgcccaccgtcgccggc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260664 61 -   1025902 cattctcctgcct-cagcctcccgagtagctgggat-gacaggtgcccg-ccaccatgcctggc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204893 61 -    811265 cattctcctgcct-cagcctcccgagtcgctgggat-gacaggtgccca-ccaccaggcccggc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       364865 61 +   1230721 cattctcctgact-cagcctccccagtagctgggat-gacaggttcccc-ccaccatatctggc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258526 17 +    465904 gattctcccgca--cggcg---------------------------------------------
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350520 13 + 123869142 I
e manLeu1.NW_012108508v1       226619 3559 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627 53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=491308.000000
s hg38.chrX_KI270880v1_alt     221082 123 +    284869 taatttttgtatttttactagagaccgag-tttcaccatgttggccaggctggt-ctcgaactcctgacctcaggcgatccacctgcctcggcctcccaa-agtgctgggatgacaggcgtgagcc
s panPan2.chrUn_NW_014024190v1 132835 123 -    177848 taatttttgtatttttactagagaccgag-tttcaccatgttggccaggctggt-cttgaactcctgacctcaagcgatccacctgcctcagcctcccaa-agtgctgggatgacaggcgtgagcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294518 124 +    417917 gtaattttgtatttttactagagaccgagttttcaccatgttggccaggctggt-ctcgaactcctgacctcaagcgatccacct-cctcggcctcccaatagtgctgggatgacaggcgtgagcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144196 123 + 149150640 taatttttgtatttttagtagagacgggg-ttttttcatgttggccaggctggt-ctcgaactcctgacctcaagtgatccacctgcctcggcctcccaa-cgtgctggggtgacaggtgtgagcc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12357 123 -     20017 taatttttgtatttttagtagagacgggg-ttttttcatgttggccaggctggt-ctcgaactcctgacctcaagtgatccacctgcctcggcctcccaa-cgtgctggggtgacaggtgtgagcc
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       391244 123 +  25972781 taatttttgtatttttagtagagacgggg-ttttttcatgttggccaggctggtcctcgaact-ctgacctcaagtgatccacctgcctcggcctcccaa-cgtgctggggtgacaggtgtgagcc
i macNem1.NW_012017243v1       C 0 I 2433
s cerAty1.NW_012001098v1       260725 123 -   1025902 taatttttgtatttttagtagagacgggg-tttcaccacgttggccgggatggt-ctcgaactcctgacctcaagtgatccacctgcctcggcctcccaa-cgtgctagaatgagaggtgtgagcc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     204954 123 -    811265 taatttttgtatttttagtagagatggga-tttcaccgtgttggccaggctggt-ctcgacctcctgacctcaggtgatccgcccgcctcggcctcccaa-agtgctgggatggcaggtgtgagcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230178 123 -    350446 taatatttgtatttttagtagagacgggg-tttcaccatgttgaccaggctggt-ctcgatctcctgatctcaggtgatccgcccgcctcatcctcccaa-cgtgctggggtgacaggagtgagcc
i manLeu1.NW_012108508v1       I 3559 C 0
s colAng1.NW_012115411v1       364926 123 +   1230721 taatttttgtctttttagtagagacgggg-tttcaccatgttggccaggctggt-ctcgaactcctgacctcagtggatccgcacgccttggcctcccag-agtgctggggtgacaggcgtgagcc
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258543 123 +    465904 -aacttgtgtgtgtttagcagagacgggggtggcagtgtgtgggccaggctggt-ctcgaactcccgacctcaagtgatctgcccacctcgccctcccta-agtgctgggatgacagacgggagcc
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350520  13 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627  53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=36415.000000
s hg38.chrX_KI270880v1_alt     221205 30 +    284869 actgcgcccagtcAGA-AGTGCACAACCTAC
s panPan2.chrUn_NW_014024190v1 132958 30 -    177848 actgcgcccagtcAGA-AGTGCACAACCTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294642 29 +    417917 accgcgcct-gTCAGA-AGTGCACAACCTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144319 30 + 149150640 gccgtacccggccAAA-CGTGCAGCACGTCC
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12480 30 -     20017 gccgtacccggccAAA-CGTGCAGCACGTCC
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       260848 30 -   1025902 gccgtacccggccAAA-CGTGCAGCACGTCC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205077 30 -    811265 gccgtacccggccAAA-CGTGCAGCACGTCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230301 30 -    350446 gccgtacccagccAAA-CGTGCAGCACGTGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365049  2 +   1230721 -----------------------GC------
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258666 31 +    465904 tccgtacctggccCGAGCGTGGATGATCTTC
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350520 13 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627 53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e macNem1.NW_012017243v1       391367 2433 +  25972781 I

a score=11926.000000
s hg38.chrX_KI270880v1_alt     221235 5 +    284869 TGCCC
s panPan2.chrUn_NW_014024190v1 132988 5 -    177848 TGCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294671 5 +    417917 TGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144349 5 + 149150640 TGCTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12510 5 -     20017 TGCTG
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       260878 5 -   1025902 TGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205107 5 -    811265 TGTTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230331 5 -    350446 TGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             258697 5 +    465904 TGCCC
i saiBol1.JH378345             C 0 C 0
s canFam3.chrX                 350533 5 + 123869142 TGCCC
i canFam3.chrX                 I 13 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627 53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e colAng1.NW_012115411v1       365051 0 +   1230721 C
e macNem1.NW_012017243v1       391367 2433 +  25972781 I

a score=501798.000000
s hg38.chrX_KI270880v1_alt     221240 134 +    284869 CGT-GGGTCTAGGGAAATTGTGGAAGATTCCTCTGGGCCTGTGTCTGTTTGGAAGTGTCTGTAATTCGGGACAAAGCTGGCGGGATA-TTGGAGGGAAAAATGGAGCCAGGAATGGGCTCAGAAAAATGGAGGCA-G
s panPan2.chrUn_NW_014024190v1 132993 134 -    177848 CGT-GGCTCTAGGGAAATTGTGGAAGATTCCTCTGGGCCTGTGTCTGTTTGGAAGTGTCTGTAATTCGGGACAAAGCTGGCGGGATA-TTGGAGGGAAAAATGGAGCCAGGAATGGGCTCAGAAAAATGGAGGCA-G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294676 135 +    417917 CGTAGGGTCTAGGGAAATGGTGG-AGATTCCTCTGGGCCTGTGTCTGTTTGGAAGTGTCTGTAATTCAGGACAAAGCTGGCGGGATA-TTGGAGGGAAACACGGAGCCAGGAATGGGCTCAGAAAAATGGAAGCAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144354 134 + 149150640 CGT-AGGTCTAGGGAGATCCTGGAAGATTCCTGTGGGCCTGGGTCTATATGGAAACGTCCGTAATTCAGGACAAAGCTGGCGGGATA-TTGGAGAGAAACATGGAGCTAGGAAGGGGCTTGGAAACATGGAACCA-G
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12515 134 -     20017 CGT-AGGTCTAGGGAGATCCTGGAAGATTCCTGTGGGCCTGGGTCTATATGGAAACGTCCGTAATTCAGGACAAAGCTGGCGGGATA-TTGGAGAGAAACATGGAGCTAGGAAGGGGCTTGGAAACATGGAACCA-G
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       393800 134 +  25972781 CGT-AGGTCTAGGGAGATCCTGGAAGATTCCTGTGGGCCTGGGTCTATATGGAAACGTCCGTAATTCAGGACAAAGCTGGTGGGATA-TTGGAGAGAAACATGGAGCTAGGAAGGGGCTTGGAAACATGGAACCA-G
i macNem1.NW_012017243v1       I 2433 C 0
s cerAty1.NW_012001098v1       260883 111 -   1025902 CGT-GGGTCTAGGGAGATCCTGGAAGATTCCTGTGGGCCTGGGTCTATATGGAAACGTCCGTAATTCAGGACAAAGCTGGAGGGATA-TTGGAGAGAAACATGGAACTAGGAA------------------------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205112 134 -    811265 CGT-GTGTCTAGGGAGATCCCGGAAGATTCCTCCGGGCCTGTGTCTATATGGAAACGTCCGTAATTGAGGACAAAGCTGGTGGGATA-TTGGAGAGAAACATGGAGCTAGGAAGGGGCTTGGAAACGTGGAACCA-G
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230336 134 -    350446 CGT-GGGTCTAGGGAAATCGTGGAAGATTTCTCCGGGCCTGGGTCTATATGGAAACGTCCGTAATTCAGGACAAAGCTGGAGGGATA-TTGGAGAGAAACATGGAGCTAGGAAGGGGCTTGGAAACATGGAACCA-G
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365051 133 +   1230721 -GT-GGGTCTAGGGAAATCCTGGAAGATTCCTCCGGGCCTGTGTCTATATGGAAACGTCCGTAATTCAGGACAAGGCTGGAGGGATA-TTGGAGGGAAAAATGGAGCCAGGAAGGGACTTGGAAACATGGAGCCA-G
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258702 116 +    465904 CAT-GGCCCGAGGGAAGTCGTGGCCGATTCCTCT-GGCCTGTGTCTATACGGAACTGTCTGTAATTCAGGACAAGGCTCAGTGGATA-TTGAAGGCAAAGATGCAGACAGGGAGGAGC------------------T
i saiBol1.JH378345             C 0 C 0
s canFam3.chrX                 350538 118 + 123869142 ACT-GGTTTCGGGGAGATCACGGAGGATTCTTCTAGCTCTGGCTCTGCATCTAAATAGTTGTAATTCAGGACCTGCTTGACGGGAGGCTCAGAGGGGCAGACGGGGCGGAGGACGGGCA------------------
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295627  53 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=178268.000000
s hg38.chrX_KI270880v1_alt     221374 54 +    284869 CAACGCCTGTAACAGGTT-----ATTTAAAGAA-----TTTTTTA-----AAAATCC----------TTGGCTTGGATT
s panPan2.chrUn_NW_014024190v1 133127 54 -    177848 CAATGCCTGTAACAGGTT-----ATTTAAGGAA-----TTTTTTT-----AAAATCC----------TTGGCTTGGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294811 54 +    417917 CAATGCCTGTAACAGGAT-----CTTTAAAGAA-----TTTTTTA-----AAAATCC----------TTGGCTTGGATT
i gorGor5.CYUI01015925v1       C 0 I 1
s rheMac8.chrX                 144488 55 + 149150640 GAGTGCCTCTGACAGGTT-----ATTTAAAAAA---ATTTTTTTT-----TAAATCC----------TTC-CTTGGATT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12649 55 -     20017 GAGTGCCTCTGACAGGTT-----ATTTAAAAAA---ATTTTTTTT-----TAAATCC----------TTC-CTTGGATT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       393934 55 +  25972781 GAGTGCCTCTGACAGGTT-----ATTTAAAAAA---ATTTTTTTT-----AAAATCC----------TTC-CTTGGATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       260994 53 -   1025902 ---TGCCTCTAACAGGTT-----ATTTAAAAAA---AATTTTTTT-----TAAATCC----------TTCGCTTGGATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205246 57 -    811265 GAATGCCTCTGACAGGTT-----ATTTAAAAAA---ATTTTTTTT----AAAAATCC----------TTGGCTTGGATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230470 55 -    350446 GAATGCCTCTAACAGTTT-----ATTTAAAAAA---ATTTTTTTT------AAATCC----------TTGGCTTGGATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365184 57 +   1230721 GAATGCATCTAACAGGTT-----GTTTAAACA------TTTTTTTAA-AAAAAATCC----------TTGGCTTGGATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             258818 54 +    465904 CAATGCTTCTAAGGGGTT-----ATTTAAAGAA-----TTGTTAA-----GAAATCC----------TTGACTTGGATT
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             295680 64 +  11138919 CAATGCTCCCAAGGAGTT-----ATTTAGAGAATAAAAATATAAAAAGATAAAATCC----------CTGGCTGGGATT
i otoGar3.GL873584             I 53 C 0
s canFam3.chrX                 350656 62 + 123869142 CGATGCCTGTAAGGAGTTAAAGAATTTAAAAAC-----------------AAAACACAACAAGCCAGTTGGCCCGGATT
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=129703.000000
s hg38.chrX_KI270880v1_alt     221428 41 +    284869 AACAAGCAGAGGGTTTCCATTAGAACACAAATCAAGGTGTT
s panPan2.chrUn_NW_014024190v1 133181 41 -    177848 AAGAAGCAGAGGGTTTCCATTGGAACACAAATCAAGGTGTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294866 40 +    417917 AACAAGCAGAGGGTTTCCGTTAGAACACAAATCAAGGTG-T
i gorGor5.CYUI01015925v1       I 1 C 0
s rheMac8.chrX                 144543 41 + 149150640 GACAAGTAGAGGGTTTCTATGAGAACATAAATCGAGATGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12704 41 -     20017 GACAAGTAGAGGGTTTCTATGAGAACACAAATCGAGATGTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       393989 41 +  25972781 GACAAGTACAGGGTTTCTATGAGAACACAAATCGAGATGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261047 41 -   1025902 AACAAGTAGAGGATTTGTATTAGAACACAAATCGAGATGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205303 41 -    811265 AATAAGTAGAGGGTTTCTGTGAGAACACAAATCGAGATGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230525 28 -    350446 AACAAGTAGAGGATTTGTAT-------------GAGATGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365241 41 +   1230721 AACACGTGGAGGGTTTGTATTAGAACACAAATCAAGATGTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             295744 27 +  11138919 AACAAGCCCAAGG--------------CAAATCAAGATGCT
i otoGar3.GL873584             C 0 I 46
s canFam3.chrX                 350718 41 + 123869142 AACAACTAGAGGGCAGCCGTTGAGACACAAATCAGGTTGTT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=139587.000000
s hg38.chrX_KI270880v1_alt     221469 35 +    284869 AACACCTACAGATGTAGCCTACTTTTGTTCTCATT
s panPan2.chrUn_NW_014024190v1 133222 35 -    177848 AACACCTACAGATGCAGACTGCTTTTGTTCTCATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294906 35 +    417917 AACACCTACAGATGCAGACTGCTTTTCTTCTCATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144584 35 + 149150640 AGCACCTACAGATGCAGTCTGCTTTTGTTCTCATC
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12745 35 -     20017 AGCACCTACAGATGCAGTCTGCTTTTGTTCTCATC
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394030 35 +  25972781 AGCACCTACAGATGCAGTCTGCTTTTGTTCTCATC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261088 35 -   1025902 AGGACCTACAGATGCAGTCTGCTTTTGTTCTCATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205344 35 -    811265 AACACCTACAGATGCAGTCTGCTTTTGTTCTCATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230553 35 -    350446 AACACCTACAGATGCAGTCTGCTTTTGTTCTCATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365282 35 +   1230721 GACACCTACCGATGTAGTCTGCTTTTGTTCTCATT
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 350759 35 + 123869142 CGCGCCCAGAAACGGAGCCTGCTTTGGCCGCCATT
i canFam3.chrX                 C 0 I 3337
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295771 46 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=1043568.000000
s hg38.chrX_KI270880v1_alt     221504 306 +    284869 TAAAACA-------t-------------------ttttttttttgagacagggtctcaccctgtcgctcagactggggtgcagtggtgtgatctcggctcactacatcttccagctcccaggctcaagtga-gcctcctacctcagcctcctgagtagctgggattacacaacacgcatgtgccaccatgcccagctaatttttatttttgtaaagacagggtctcactatgttgcccaggccggtctcgaactcttggccccaagcg---atcctcctgtcttggtctcccaaagtgctcgaatcacaggtgtgagccaccaagcctgg-ccTTCT
s panPan2.chrUn_NW_014024190v1 133257 306 -    177848 TAAATGA-------t-------------------ttttttttttgagacagggtctcactctgtcgctcagactggggtgcagtggtgtgatctcggctcactacatcttccagctcccaggcttaagtga-gcctcctacctcagcctcctgagtagctgggattacacagcacgcatgtgccaccacgcccggctaatttttatttttgtaaagacagggtctcactatgttgcccaggccagtctcgaactcttggccccaagcg---atcctcctgtcttggtctcccaaagtgctcgaatcacaggtgggagccaccaagcctgg-ccTTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       294941 298 +    417917 TAAAAACA-----tt-------------------ttttttttttgagacagggtctcactctgtcgctcagactggggtgcagtggtgtgatctc-gctcactacatcttccagctcccaggctcaagtgaggcctcctacctcagcctcctgagtagct--gattacacagca-gcatgtgcca-cacgcccgg-taatttttatttttgtaaagacatggtctcactatgttgccca-gccggtctcgaactcttgg-cccaagcg---atcctcct-tcttggtctcccaaagtgctcgaatcacaggtgtgagcca-cAAGCCTGG--CTTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144619 325 + 149150640 TAAAACGTAttttttgtttgtttg----------ttttttctttgagacagggtctcactctgccgcccaggctggagtgcagtggtgcgatctcggctcactgcagcttccagctcccaggctcacgcta-tcctcctacctcagcctcctgagtagctgggattacaggacgggcatgcaccgccacgcccggctaacttttatttttctaaagacggggtctcactacgttgcccacgccggtcttgaactcctgaccccaggcaatcatcctcctgtctcggcctcccaaaatgctggaatcacaggtgtgagccaccaagcctgg-ccTTCT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        12780 321 -     20017 TAAAATGTAtttttt-t---tttg----------ttttttctttgagacagggtctcactctgccgcccaggctggagtgcagtggtgcgatctcggctcactgcagcttccagctcccaggctcacgcta-tcctcctacctcagcctcctgagtagctgggattacaggacgggcatgcaccgccacgcccggctaacttttatttttctaaagacggggtctcactacgttgcccacgccggtcttgaactcctgaccccaggcaatcatcctcctgtctcggcctcccaaaatgctggaatcacaggtgtgagccaccaagcctgg-ccTTCT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394065 324 +  25972781 TAAAACGTAtttttt-tttgtttg----------ttttttatttgagacagggtctcactctgccgcccaggctggagtgcagtggtgcgatctcggctcactgcagcttccagctcccaggctcacgcta-tcctcctacctcagcctcctgagtagctgggattacaggacgggcatgcaccgccacgcccggctaacttttatttttctaaagacggggtctcactacgttgcccacgccggtcttgaactcctgacaccaggcaatcatcctcctgtctcggcctcccaaaatgctggaatcacaggtgtgagccaccaagcctgg-ccTTCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261123 320 -   1025902 TAAAACGTAtttttt-----tttg----------ggttttttttgagacagggtttcactctgtcacccaggctggagtgcagtggtgcgatctcggctcactacagcttccagctcccaggctcatgctg-tcctcctacctcagcctcctgagtagctgggattacaggacgggcatgcaccgccacgcccggctaacttttatttttctaaagatggggactcgctatgttgcccacgccggtcttgaactcctggccccaagcgatcatcctcctgtctcggcctcccaaaatgctggaatcacaggtgtgagccaccaagcctgg-ccTTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205379 331 -    811265 TAAAACatatatata-----tatatatatatattttttttttttgagacacggtctcactctgccgcccaggctggagtgcagtggcgcgatctcggctcactacagcttccagctcccaggctcacgcga-tcctcctgcctcagcctcctgagtagctgggattacaggacggacctgcacctccacgcccggctaatttttatttttctaaagacggggtctcacgacgttgcccacgccggtcttgaactcttggccccaagcgatcatcctcctgtctcggcctcccaaaatgttggaatcacaggtgtgagccaccaagcctggccCTTCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       230588 320 -    350446 TAAAACGTAtttttt-----ttgg----------ttttttttttgagacacggtttcactctgtcacccaggctggagtgcagtggtgcgatctcggctcactacagcttccagctcccaggctcacgctg-tcctcctacctcagcctcctgagtagctgggattacaggacgggcatgcaccgccacacccggctgacttttatttttctaaagacggggtctcactacgttgcccacgctggtcttgaactcctggccccaagcgatcatcctcctgtctcggcctcccaaaatgctggaatcacaggtgtgagccaccaagcctgg-ccTTCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365317 309 +   1230721 TAAAACAt-----tt-----tttg-------------ctttttggagacagggtctcactctgtcgcccaggctggagtgcagtggcgcgatctcggctcactacagcttccagctcccaggctcatgctc-tcctcctacctcagcctcctgagtagctgggattatggcacgggcatgcaccgccacgcccggctgatttttatttttctaaagacggggtctcactatgttgcccacgccggtcttgaactcctggccccaagcg---atcctcctgtctcggcctcccaaaatgctggaatcacaggtgcgagataccaagcctgg-ccTTCT
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             258872   0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             295771  46 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=290041.000000
s hg38.chrX_KI270880v1_alt     221810 85 +    284869 AGATGCTGGATGCC-AGGGCCATCGGAAACCGG-AAATCTAGAACAAAAGTGC--AGTCATGAGTCAAAGGGAAGCA----AATGTGTCCGTG
s panPan2.chrUn_NW_014024190v1 133563 85 -    177848 AGATGCTGGATCCC-AGGGCCGTCGGAAACTGG-AAATCTAGAACAAAGGTGC--AGTCATGAGTCAAAGGGAAGCA----AATGTGTCCGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295239 85 +    417917 AGATGCTGGATCCC-AGGGCCGTCGGCCGTTGG-AAATTCAGAACAAAAGTGC--AGTCATGAGTCAAAGGGAAGCA----AATGTGTCCGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 144944 85 + 149150640 AGATGCTGCATCCC-GGGGCCACCAGAAAGTGG-AAATGTAGAACAGAAGGGC--AGTCACGAGTCGAAGGTAAGCA----AACGGGACCGTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13101 85 -     20017 AGATGCTGCATCCC-GGGGCCACCGGAAAGTGG-AAATGTAGAACAGAAGGGC--AGTCACGAGTCGAAGGTAAGCA----AACGGGACCGTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394389 85 +  25972781 AGATGCTGCATCCC-GGGGCCACCGGAAAGTGG-AAATGTAGGACAGAAGGGC--AGTCACGAGTCGAAGGTAAGCA----AACGGGACCGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261443 85 -   1025902 AGACGCTGGATCCC-GGGGCCACCGGAAAGTGG-AAATGTAGAACAGAAGGCC--AGTCACGAGTCGAAGGTAAGCA----AACGGATCCGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     205710 85 -    811265 AGATGCTGGATCCC-GGGGCCACCGGAAAGTGG-AAATGTAGAACAGAAGGAC--AGTCGTGAGTCAAAGGTAAGCA----AATGTGTCCGtg
i chlSab2.chrUn_KE147541v1     C 0 I 29
s manLeu1.NW_012108508v1       230908 86 -    350446 AGATGCTGGATCCC-GGGGCCACCAGAAAGTGGTGAATCTAGAACAGAAGGCC--AGTCACGAGTCGAAGGTAAGCA----AACGGATCCGTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365626 86 +   1230721 AGATGCTGGATCCCAGGGGCCACCGGAAAGTTG-AAATGTAGAACAAAAGGAC--AGTCATGAGTCAAAGGCAAGCA----AATGTATCCGTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             295817 91 +  11138919 AGACGGTGGGTCCC-AGGGAAATCAGAAAGCTG-GAAATCGTACCCAAAGTCCAGAGACACAGGTCTCAGAAGAGCAGCTTGGCTGGTCCCTG
i otoGar3.GL873584             I 46 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I

a score=69218.000000
s hg38.chrX_KI270880v1_alt     221895 37 +    284869 GAAAACTGCCC-GGGCTGGTCTGGTCGGTGGAGGTT-----GT
s panPan2.chrUn_NW_014024190v1 133648 37 -    177848 GAAAACTGCCC-GGGCTGGTCTGGTTGGTGGAGGTT-----GT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295324 37 +    417917 GAAAACTGCCC-GGGCTGGTCTGGTCGGTGAAGGTT-----GT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145029 35 + 149150640 GAAAACGGCTT-GGGCTGATCTGGTTGCTGGAGGTT-------
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13186 35 -     20017 GAAAACGGCTT-GGGCTGATCTGGTTGCTGGAGGTT-------
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394474 35 +  25972781 GAAAACGGCTT-GGGCTGATCTGGTTGCTGGAGGTT-------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261528 38 -   1025902 GAAAACGGCCCGGGGCTGGTCTGGTTGCTGGAGGTTGT-----
i cerAty1.NW_012001098v1       C 0 I 113
s manLeu1.NW_012108508v1       230994 37 -    350446 GAAAACGGCCCGGGGCTGGTCTGGTTGCTGGAGGTT--G----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365712 38 +   1230721 GAAAACGGCCCGGGGCTGGTCTGGTTGCTGGAGGTT---GT--
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             295908 30 +  11138919 GGGTGCAGCTC-----CGTCCTGCCCGCCGATTAT--------
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I

a score=207717.000000
s hg38.chrX_KI270880v1_alt     221932 160 +    284869 GACATCAGATCTTCCAACCTCTTCGTGGGAGAAATCAGTCCTATTGAAACTACAACCA-GG--CACTTAAACTGTTTGGAAAGACGAGCTGGTTTTATGAAAGACAATGGTCCTTTCTGTCCATAAGGATGAGATTATTGTGCATTTTTGCTTCTGGCTGAGA
s panPan2.chrUn_NW_014024190v1 133685 160 -    177848 GACATCAGATCTTCCAACCTCTTCGTGGAAGAAATCAGTCCTATTGAAACTACAACCA-AG--CACTTAAACTGTTTGGAAAGACGAGCTGGTTTTATGAAAGACGATGGTCCTTTCTGTCCATAAGGATGAGATTATTGTGCATTTTTGCTTCTGGCTGAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295361 158 +    417917 GACATCAGATCTTCCAACCTCTTCGTGGCAGAAATCAGTCGTATTGAAACTACAACCA--G--CACTTAAACTGTTTGGAAAGACAAGCTGGTTTTATGAAAGACAATGGTCCTTTCTGTCCATAAGGAT-AGATTATTGTTCATTTTTGCTTCTGGCTGAGA
i gorGor5.CYUI01015925v1       C 0 I 1
s rheMac8.chrX                 145064 109 + 149150640 -------------------------------------GTCCTGTGGAAACTGCAACCC-AG--CACTCAAACTGCTTGGAAAGAGGAACTGGTTTTGTGAAAGAGAATGGTCCTTTCTGTCCATATGGATGCGACTACTATCC--------------ATGAGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13221 109 -     20017 -------------------------------------GTCCTGTGGAAACTGCAACCC-AG--CACTCAAACTGCTTGGAAAGAGGAACTGGTTTTGTGAAAGAGAATGGTCCTTTCTGTCCATATGGATGCGACTACTATCC--------------ATGAGA
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394509 109 +  25972781 -------------------------------------GTCCTGTGGAAACTGCAACCC-AG--CACTCAAACTGCTTGGAAAGAGGAACTGGTTTTGTGAAAGAGAATGGTCCTTTCTGTCCATATGGATGCGACTACTATCC--------------ATGAGA
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       231031  87 -    350446 --------------------------------------TCCTATGGAAACTGCAACCC-AG--CACTTAAACTACTTGGAAAGAGGAACTGGTTTTGTGAAAGAGAATGGTCCTTTCTG---------------------TCC--------------ATGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       365750 125 +   1230721 -------------------------------------GTCTTATGGAAACTGCAACCC-AGCACACTTAAACTGCTTGGAAAGAGGAGCTGGTTTTCTGAAAGACAATGGTCCTTTCTGTCCATATGGATGTAACTACTGTTCTTGTTGGCTTCTGGCTGAGA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             295938 161 +  11138919 GACTTCAGAATCTGGGAGCCCTTGGTGGGCAAAAGTCATCACATTGAAACTACAATCAGAG--AAGCTTAACTGTGTGGAATTATTACCCGATTTCATAAGAGAGAAAAGTTCCCTCTGTACATAGTTATGGGACCATGGTGCATTTTTGGTTGAGGGTAATG
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             258872   0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795  29 -    811265 I
e cerAty1.NW_012001098v1       261566 113 -   1025902 I

a score=87644.000000
s hg38.chrX_KI270880v1_alt     222092 29 +    284869 TAAATGTAGCAAGACA-TATAG--------GAAAAAAA-
s panPan2.chrUn_NW_014024190v1 133845 29 -    177848 TAAATGTAGCAACACA-TATAG--------GAAAAAAA-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295520 29 +    417917 TAAATGTAGCAAGACA-TACAG--------GAAAAAAA-
i gorGor5.CYUI01015925v1       I 1 C 0
s rheMac8.chrX                 145173 29 + 149150640 TAAATGTAGCAAGACA-TATAG--------AAAAAAAA-
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13330 29 -     20017 TAAATGTAGCAAGACA-TATAG--------AAAAAAAA-
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394618 30 +  25972781 TAAATGTAGCAAGACA-TATAG-------AAAAAAAAA-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261679 31 -   1025902 TAAATGTAGCAAGACA-TATAG------AAAAAAAAAA-
i cerAty1.NW_012001098v1       I 113 C 0
s manLeu1.NW_012108508v1       231118 29 -    350446 TAAATGTAGCAAGACA-TATAG--------AAAAAAAA-
i manLeu1.NW_012108508v1       C 0 T 2769
s colAng1.NW_012115411v1       365875 37 +   1230721 TTAATGTAGCAAGACA-TATGGGGGGGGGAAAAAAAAA-
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584             296099 31 +  11138919 AAAATGTAGCAAGACAGTTTAA--------AAAAAAAAG
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I

a score=33832.000000
s hg38.chrX_KI270880v1_alt     222121 14 +    284869 CTGGTTACT-GGGgg
s panPan2.chrUn_NW_014024190v1 133874 14 -    177848 CTGGTTACT-GGGgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295549 15 +    417917 CTGGTTACTGGGGgg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145202 14 + 149150640 ATGGTTACT-GGGGA
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13359 14 -     20017 ATGGTTACT-GGGGA
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394648 14 +  25972781 ATGGTTACT-GGGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261710 14 -   1025902 ATAGTTACT-GGGga
i cerAty1.NW_012001098v1       C 0 C 0
s colAng1.NW_012115411v1       365913 14 +   1230721 CTGATTACT-GGGga
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584             296130 14 +  11138919 GTGGTTAGT-GGGGG
i otoGar3.GL873584             C 0 I 406
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I

a score=76751.000000
s hg38.chrX_KI270880v1_alt     222135 40 +    284869 ccgagcgtggtggctcacccctgtaattccagcactttgg
s panPan2.chrUn_NW_014024190v1 133888 40 -    177848 ccgagcgtggtggctcacccctgtcattccagcactttgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295564 39 +    417917 ccgagcgtggtggctcacccctgtaattccagcacttt-g
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145216 40 + 149150640 CAgggtgcggtggctcacacgtgtcatcccagtactttga
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13373 40 -     20017 CAgggtgcggtggctcacacgtgtcatcccattactttga
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394662 40 +  25972781 CAgggtgcggtggctcacacgtgtcatcccagtactttga
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       261724 40 -   1025902 ccaggtgcggtggctcacgcctgtcatcccagcactttgg
i cerAty1.NW_012001098v1       C 0 I 606
s colAng1.NW_012115411v1       365927 40 +   1230721 ccgggtgcagtggctcacacctgtcatcccagcactttga
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I

a score=263298.000000
s hg38.chrX_KI270880v1_alt     222175 180 +    284869 gaggctgaggtgggaggatcacttgaggtcggcagttcgagaccagcctgaccaacatggagaaa-ccctgtctttactaaaaatacaaaaattagccggacatggtggtg--taca-cttgtaatcccagctactggggaggctgaggcaacagaatcccttgaacccgggaggcagaggttg
s panPan2.chrUn_NW_014024190v1 133928 177 -    177848 gaggctgaggtgggaggatcacttgaggttgggggttcgagaccagcctggtcaacatggagaaa-ccctgtctctactaaaaatacaaaaattagccaggcatgttggtg--caca-cttgtaatcccaactactcaggaggccgaggcaa---aaatgcttgaacctgggaggcggaggttg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295603 173 +    417917 gaggccgaggcaggcggatcacttgaggtcgggagttcgagaccagcctgaccaacat-gagaaa-ccccgtct-tactaaaaatacaaaaattagcc-ggcgtg-tggcg--ggtg-cttgtaatcccagctact-gggaggctga-gcaggagaatcgcttgaacccgggaggtggagg-tg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145256 181 + 149150640 gaggctgaggcaggtggatcccctgaggtcaggagttcaagaccagcctggccaacatggagaaacccccgtcgctactaaaaatacaaaaattagccagatatggtggtg--cacg-cctggaatcccagctactcgggaggctgaggcaggagaatggctcgaacccgggaggcggaggttg
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13413 181 -     20017 gaggctgaggcaggtggatcccctgaggtcaggagttcaagaccagcctggccaacatggagaaacccccgtcgctactaaaaatacaaaaattagccagatatggtggtg--cacg-cctggaatcccagctactcgggaggctgaggcaggagaatggcttgaacccgggaggaggaggttg
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394702 184 +  25972781 gaggctgaggcaggtggatcccctgaggtcaggagttcaagaccagcctggccaacatggagaaacccccgtcgctactataaatacaaaaattagccagatatggtggtggcaacgccctggaatcccagctactcgggaggctgaggcaggagaatggcttgaacccgggaggcggaggttg
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1       365967 180 +   1230721 gaggctgaggcaggtggatcacctgaggtcaggagttcaagaccagcttgacccacatggagaaa-ccccgtctctactaaaaatacaaaaattcaccagatatggtggtg--cctg-cctgtcatcccagctactcaggaggctgaggcaggagaatggcttgaacccgggaggcggaggttg
i colAng1.NW_012115411v1       C 0 I 977
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872   0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795  29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I

a score=20038.000000
s hg38.chrX_KI270880v1_alt     222355 17 +    284869 tagtgagct-gagatcac
s panPan2.chrUn_NW_014024190v1 134105 17 -    177848 cagtgagcc-gagatcac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295776 17 +    417917 cagtgagcc-gagatcac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145437 17 + 149150640 cagtgagcc-aagatcac
i rheMac8.chrX                 C 0 I 138
s macFas5.chrUn_KE146137        13594 18 -     20017 cagtgagccaaagatcac
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       394886 17 +  25972781 cagtgagcc-gagatcac
i macNem1.NW_012017243v1       C 0 I 138
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=10109.000000
s hg38.chrX_KI270880v1_alt     222372 25 +    284869 gccactgcactccagcctggtcaac
s panPan2.chrUn_NW_014024190v1 134122 25 -    177848 gccactgcactccagtctgggcaac
i panPan2.chrUn_NW_014024190v1 C 0 M 1208
s gorGor5.CYUI01015925v1       295793 25 +    417917 gccactgcactccagcctggtcaac
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13612 25 -     20017 acagccacagtccagcctgggcgac
i macFas5.chrUn_KE146137       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I

a score=2954.000000
s hg38.chrX_KI270880v1_alt     222397 13 +    284869 aagagcgaaattc
s gorGor5.CYUI01015925v1       295818 13 +    417917 aagagcgaaattc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13637 12 -     20017 -agagcgagactc
i macFas5.chrUn_KE146137       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e panTro5.chrX                 403175 2420 + 155549662 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e panPan2.chrUn_NW_014024190v1 134147 1208 -    177848 M

a score=9036.000000
s hg38.chrX_KI270880v1_alt     222410 27 +    284869 tgtctcaaaaaaagaaaaaaaaaaaaT
s panTro5.chrX                 405595 25 + 155549662 TGTCTCAAAAAAAGAAAAAAAAAA--T
i panTro5.chrX                 I 2420 C 0
s gorGor5.CYUI01015925v1       295831 24 +    417917 tgtctcaaaaaaagaaaaaaaaa---T
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13649 27 -     20017 cgcctcaaaaaaaataaaaaataaaat
i macFas5.chrUn_KE146137       C 0 I 16
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872  0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e panPan2.chrUn_NW_014024190v1 134147 1208 -    177848 M

a score=2330.000000
s hg38.chrX_KI270880v1_alt     222437 9 +    284869 CACACCACA
s panTro5.chrX                 405620 9 + 155549662 CACACCACA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       295855 9 +    417917 CACACCATA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             258872 0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I
e panPan2.chrUn_NW_014024190v1 134147 1208 -    177848 M

a score=1560.000000
s hg38.chrX_KI270880v1_alt     222446 4 +    284869 gact
s panTro5.chrX                 405629 4 + 155549662 gact
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       295864 4 +    417917 gact
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             258872 4 +    465904 ggcc
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I
e panPan2.chrUn_NW_014024190v1 134147 1208 -    177848 M

a score=16053.000000
s hg38.chrX_KI270880v1_alt     222450 25 +    284869 gggcgcagtggctcacacctgtaat
s panTro5.chrX                 405633 25 + 155549662 gggcacagtggctcacacctgtcat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135392 25 -    177848 gggcgcggtggctcacgcctgtaac
i panPan2.chrUn_NW_014024190v1 M 1208 C 0
s gorGor5.CYUI01015925v1       295868 25 +    417917 gggtgcagtggctcacacctgtaat
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             258876 25 +    465904 gcgtgtggtggctgatgcctgtcaa
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296144 406 +  11138919 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I

a score=26007.000000
s hg38.chrX_KI270880v1_alt     222475 25 +    284869 cccatcactttgggaaggcaaggtg
s panTro5.chrX                 405658 25 + 155549662 cccatcactttgggaaggcaaggtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135417 25 -    177848 cccagcactttgggaggccgaggtg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295893 25 +    417917 cccatcactttgggaaggcaaggtg
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             258901 25 +    465904 cccagcactttgggaggccaaggtg
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             296550 25 +  11138919 CCTTGTGctttgggaggtcaaggca
i otoGar3.GL873584             I 406 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     205795 29 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I

a score=73698.000000
s hg38.chrX_KI270880v1_alt     222500 48 +    284869 ggtggatcacctgaggtcaggagttcgagaccagc-ctggccaacatgg
s panTro5.chrX                 405683 48 + 155549662 ggtggatcacctgaggtcaggagttcgagaccagc-ctggccaacatgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135442 48 -    177848 ggtggatcacctgaggtcaggagtttgagaccagc-ctggccaacatgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       295918 49 +    417917 ggtggatcacctgaggtcaggagtttgagaccagcgctgaccaacatgg
i gorGor5.CYUI01015925v1       C 0 I 471
s chlSab2.chrUn_KE147541v1     205824 48 -    811265 ggtggatcccctgaggtcaggagttcgagagcagc-cggaccaacacgg
i chlSab2.chrUn_KE147541v1     I 29 C 0
s saiBol1.JH378345             258926 48 +    465904 gctggatcccctgaggtcaggagttcgagaccagc-ctggccaacatgg
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             296575 48 +  11138919 ggaagcttgcttgaggccagaagtttgagatcagg-ctgagcaacatag
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I

a score=211787.000000
s hg38.chrX_KI270880v1_alt     222548 164 +    284869 tgaaaccccgtctctactaaaaatac----------aaaaattacctgggtgtgatggcgggcgcctgtaatcccagctactcgggaggctgaggccggagaatctcttgaacccgggaggcagaggttgccgtgagccga-gaccatgccgttgcactccagcctgggcaa--cag
s panTro5.chrX                 405731 164 + 155549662 tgaaaccccgtctctactaaaaatac----------aaaaattacctgggcgtgatggcgggtgcctgtaatccccgctactcgggaggctgaggccggagaatctcttgaacccgggaggcagaggttgccgtgagccga-gaccatgcgattgcactccagcctgggcaa--cag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135490 164 -    177848 tgaaaccccgtctctactaaaaatac----------aaaaattacctgggcgtgatggcgggcgcctgtaatccccgctactcgggaggctgaggccggagaatctcttgaacctgggaggcagaggttgccgtgagccgt-gaccatgccattgcactccagcctgggcaa--cag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296438 166 +    417917 tgaaaccccgtctctactaaaaatac---------aaaaaattacctgggcgtgatggcgggtgcctgtaatcccagctactcgggaggctgaggccagagaatctcttgaacctgggaggcggaggttgtagtgagccgaggaccatgccattgcactccagcctgggcaa--cag
i gorGor5.CYUI01015925v1       I 471 C 0
s chlSab2.chrUn_KE147541v1     205872 164 -    811265 agaaaccccgtctctactaaaaatac----------aaaaattagccagatacggtggcacacgcctggaatcccagctactcaggaggctgaagcaggagaatcgcttgaatccaggaggcggaggttgcagtgagccga-gatcgcacagccacagaccagcctgggcga--cag
i chlSab2.chrUn_KE147541v1     C 0 I 62
s saiBol1.JH378345             258974 176 +    465904 tgaaaccccgtctctactaaaaaaacaaaaaaaaaaaaaaaatacccatatgtggcagcaggcacctgtcatcccaggtactccggaggctgaggcaagagaatcacttgaacctgggaggtggaggtgtcagtgagctga-gatcacaccactgcactccagcctgggtgacccag
i saiBol1.JH378345             C 0 I 3
s otoGar3.GL873584             296623 159 +  11138919 caagaccccatctgtacaaaaaatta---------aaaaaactaactgggcatggtggtgtatgcccataat------ttcttgggaagctaaagcaggaggattacttcagtccaggagtttgaggctgcagtgagctgt-gatgatgcctctgctctccagcttgggtag--cag
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676  16 -     20017 I

a score=18953.000000
s hg38.chrX_KI270880v1_alt     222712 24 +    284869 gagtgtaactctgtctcaaaaaaa
s panTro5.chrX                 405895 24 + 155549662 gagtgtaactctgtctcaagaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135654 24 -    177848 gagtgtaactctgtctcaagaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296604 24 +    417917 gagtgtaactctgtctcaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             259153 18 +    465904 ----aaaactccatctcaaaaa--
i saiBol1.JH378345             I 3 C 0
s otoGar3.GL873584             296782 23 +  11138919 -gctgagaccctgtctctaaaaaa
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     206036 62 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I
e macFas5.chrUn_KE146137        13676 16 -     20017 I

a score=4407.000000
s hg38.chrX_KI270880v1_alt     222736 8 +    284869 -taaatgag
s panTro5.chrX                 405919 8 + 155549662 -taaaTGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135678 8 -    177848 -taaaTGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296628 8 +    417917 -taaaTGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13692 8 -     20017 -taagtaaa
i macFas5.chrUn_KE146137       I 16 C 0
s otoGar3.GL873584             296805 6 +  11138919 taaaat---
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             259171 0 +    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     206036 62 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I

a score=59121.000000
s hg38.chrX_KI270880v1_alt     222744 34 +    284869 taaataaataaat--aagaaaaTTCAAAAGAGAAAA
s panTro5.chrX                 405927 34 + 155549662 TAAATAAATAAAT--AAGAAATTTCAAAAGAGAAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135686 34 -    177848 TAAATAAATAAAT--AAGAAATTTCAAAAGAGAAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296636 34 +    417917 TAAATAAATAAAT--AAGAAATTTCAAAAGAGAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13700 34 -     20017 taaataaataaat--aagaaatttcaaaagagaaaa
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     206098 34 -    811265 taagtaaataaat--aagaaattTCAAAAGAGAAAA
i chlSab2.chrUn_KE147541v1     I 62 C 0
s saiBol1.JH378345             259171 31 +    465904 taaataaataaaT-----GCATTTCAAAAGAGAAAC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             296811 34 +  11138919 aaaataaataaaacaaaataaTCTTCAAAGACAA--
i otoGar3.GL873584             C 0 I 3882
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I

a score=32297.000000
s hg38.chrX_KI270880v1_alt     222778 37 +    284869 GTTTT---------GG-AAAACTGGTTACTG-----GGGGCGGACACCGAAC
s panTro5.chrX                 405961 37 + 155549662 GTTTT---------GG-AAAACTGGTTACTG-----GGGGCGGACACCGAAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135720 37 -    177848 GTTTT---------GG-AAAACTGGTTACTG-----GGGGCGGACACCGAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296670 38 +    417917 GTTTT---------GGAAAAACTGGTTACTG-----GGGGCGGACACCGAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13734 17 -     20017 GTGTT---------AA-AATACTGGTT-------------------------
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     206132 46 -    811265 GTGTTTTTTTTAAAAA-AAAACTGGTTACTG-----GGGGCAGGCACTGACC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s saiBol1.JH378345             259202 42 +    465904 GTTTT---------AA-AGAACCGGTTACCGGTGGCGTGGCGGACACTGAAC
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145454 138 + 149150640 I
e macNem1.NW_012017243v1       394903 138 +  25972781 I

a score=257566.000000
s hg38.chrX_KI270880v1_alt     222815 105 +    284869 GTTTTATTTATATTCGTCTGTGTTCTTTTCCTGGATAAAATATAAATTAAAACTAAAACCAAGTAACTGCGGAGAACATTGGCAAAGTTCTGTTATTACAGGAGG
s panTro5.chrX                 405998 105 + 155549662 GTTTTATTTATATTCGTCTGTGTTCTTTTCCTGGATAGAATATAAATTAAAACTACAACCAAGTAACTGCGGAGAACACTGGCAAAGTTCTGTTATTACAGGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135757 105 -    177848 GTTTTATTTATATTCGTCTGTGTTCTTTTCCTGGATAGAATATAAATTAAAACTACAACCAAGTAACTGCGGAGAACATTGGCAAAGTTGTGTTATTACAGGAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296708 105 +    417917 GTTTTATTTATATTTGTCTGTGTTCTTTTCCTGGATAGAATATAAATTAAAACTACAACCAAGTAACTGGGGAGAACATTGGCAAAGCTCTGTTATTACAGGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145592 105 + 149150640 GTTTTATTTATAGTCGTCTGCGTTCTTTGCCTGGATAGAGTATCATTTAAAAATACAACCAGCTAAGTGGGAGGAACGCTGGCAAAGTTCTGTTATTCCAGGAGG
i rheMac8.chrX                 I 138 C 0
s macFas5.chrUn_KE146137        13751 102 -     20017 ---TTATTTATAGTCGTCTGCGTTCTTTGCCTGGATAGAATGTCATTTAAAAATACAACCAGCTAAGTGGGAGGAACGCTGGCAAAGTTCTGTTATTCCAGGAGG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       395041 105 +  25972781 GTTTTATTTATAGTCGTCTGCGTTCTTTGCCTGGATAGAATATCATTTAAAAATACAACCAGCTAAGTGGGAGGAACGCTGGCAAAGTTCTGTTATTCCAGGAGG
i macNem1.NW_012017243v1       I 138 C 0
s chlSab2.chrUn_KE147541v1     206178 105 -    811265 GTTTTATTTGTAGTCTTTTGCATTCTTTGCCTGGATAGAATATCATTTAAAAATACAACCAGCTAAGTGGGAGGAACGCTGGCAAAGTTCTGTTATTCCAGGAGG
i chlSab2.chrUn_KE147541v1     C 0 I 150
s saiBol1.JH378345             259244 104 +    465904 ATTGTATTTATATTGCTCTGTGTTCTTTGCCCAGAAAGATGATAATTTAAAAACACAACCAAGTCAA-AAGTGGAATGTTGGCAAATTTCTGTTACTGCGGAAGG
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=51903.000000
s hg38.chrX_KI270880v1_alt     222920 25 +    284869 GGTATTTCTGAGCAAATAGGATCCC
s panTro5.chrX                 406103 25 + 155549662 GGTATTTCTGAGTAAATAGGATCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135862 25 -    177848 GGTATTTCTGAGTAAATAGGATCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296813 25 +    417917 GGTATTTCTGAGCAAATAGGATCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145697 25 + 149150640 AATATTTCTGAGCAAATAGGATCCC
i rheMac8.chrX                 C 0 I 114
s macFas5.chrUn_KE146137        13853 25 -     20017 AATATTTCTGAGCAAATAGGATCCC
i macFas5.chrUn_KE146137       C 0 I 4
s macNem1.NW_012017243v1       395146 25 +  25972781 AATATTTCTGAGCAAATAGGATCCC
i macNem1.NW_012017243v1       C 0 I 115
s saiBol1.JH378345             259348 25 +    465904 ATGATTTCTGAGCAATGAGAACGCC
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206283 150 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=28754.000000
s hg38.chrX_KI270880v1_alt     222945 28 +    284869 TCCGACCTCATTTTTTTCTGAGATACGA
s panTro5.chrX                 406128 28 + 155549662 TCCGACCTCATTTTTTTCTGAAATACGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 135887 28 -    177848 TCCGACCTCATTTTTTTCTGAAATACGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296838 28 +    417917 CCCGACCTCATTTTTTCCTGAGATACGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        13882 27 -     20017 TTCCACCTCATTTTTT-CTGAAATATGA
i macFas5.chrUn_KE146137       I 4 C 0
s saiBol1.JH378345             259373 28 +    465904 CTTCACCTCGTTTTCTTCTGAAATATGA
i saiBol1.JH378345             C 0 I 225
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206283 150 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145722 114 + 149150640 I
e macNem1.NW_012017243v1       395171 115 +  25972781 I

a score=1010.000000
s hg38.chrX_KI270880v1_alt     222973 2 +    284869 CA
s panTro5.chrX                 406156 2 + 155549662 CA
i panTro5.chrX                 C 0 I 82
s panPan2.chrUn_NW_014024190v1 135915 2 -    177848 CA
i panPan2.chrUn_NW_014024190v1 C 0 I 78
s gorGor5.CYUI01015925v1       296866 2 +    417917 CA
i gorGor5.CYUI01015925v1       C 0 I 81
s macFas5.chrUn_KE146137        13909 2 -     20017 GA
i macFas5.chrUn_KE146137       C 0 I 79
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       231147 2769 -    350446 T
e saiBol1.JH378345             259401 225 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206283 150 -    811265 I
e cerAty1.NW_012001098v1       261764 606 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 145722 114 + 149150640 I
e macNem1.NW_012017243v1       395171 115 +  25972781 I

a score=25320.000000
s hg38.chrX_KI270880v1_alt     222975 7 +    284869 GTAAGTG
s panTro5.chrX                 406240 7 + 155549662 GCAACTG
i panTro5.chrX                 I 82 C 0
s panPan2.chrUn_NW_014024190v1 135995 7 -    177848 GCAACTG
i panPan2.chrUn_NW_014024190v1 I 78 C 0
s gorGor5.CYUI01015925v1       296949 7 +    417917 GCAACTG
i gorGor5.CYUI01015925v1       I 81 C 0
s rheMac8.chrX                 145836 7 + 149150640 GTAACTG
i rheMac8.chrX                 I 114 C 0
s macFas5.chrUn_KE146137        13990 7 -     20017 GTAACTG
i macFas5.chrUn_KE146137       I 79 C 0
s macNem1.NW_012017243v1       395286 7 +  25972781 GTAACTG
i macNem1.NW_012017243v1       I 115 C 0
s cerAty1.NW_012001098v1       262370 7 -   1025902 GTAACTG
i cerAty1.NW_012001098v1       I 606 C 0
s chlSab2.chrUn_KE147541v1     206433 7 -    811265 GTAACTG
i chlSab2.chrUn_KE147541v1     I 150 C 0
s manLeu1.NW_012108508v1       228378 7 -    350446 GTAACTG
i manLeu1.NW_012108508v1       T 2769 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e saiBol1.JH378345             259401 225 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=788037.000000
s hg38.chrX_KI270880v1_alt     222982 202 +    284869 TTAAAA-ATGAGATGATTGCCAACCAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGAGCAAAAAATTAAAGGAGAACAGGAACTCAGgct-aaaggagcaatttagaatttcttttcgatactagaatcattggatatccacg----gattgttagtattttgagatggagtct-tgctctgttgcccacgctgga-gtgcag
s panTro5.chrX                 406247 206 + 155549662 TTAAAA-ATGAGATGATTGCCAACCAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGAGCGAAAAATTAAAGGAGAACAGGAACTCAGGCT-AAAGGAGCAATTTAGAATTTCTTTTCGATACTGGAATCATTGGATATCCACGGATTGATTGATAGTAttttgagatggagtcc-tgctctgtcgcccaggctgga-gtgcag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 136002 206 -    177848 TTAAAA-ATGAGATGATTGCCAACCAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGAGCGAAAAATTAAAGGAGAACAGGAACTCAGGCT-AAAGGAGCAATTTAGAATTTCTTTTCGATACTGGAATCATTGGATATCCACGGATTGATTGATAGTAttttgagacggagtcc-tgctctgtcgcccaggctgga-gtgcag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       296956 206 +    417917 TTAAAA-ATGAGATGATTGGTAACCAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGACCGAAAAATTAAAGGAGAACAGGAACTCAGGCTAAAAGGAGCAATTTAGAATTTCTTTTCGATCCTGGAATCATTGCATAT-CATGGATTAATT-ATAGTAtttcgagacggagtct-tgctctgtcgcccaggctggaggtgcag
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 145843 207 + 149150640 TTAAAA-ATGAGATCATTGCCAACAAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGAGCCAGAAATGAAAGGAGAACATGAACTCACCGT-AAAGGAGCGATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCTACGGATTAATTGTGAGttttttgagacggagtctccgctctgtcgcccaggctgga-gtgcaa
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        13997 206 -     20017 TTAAAA-ATGAGATCATTGCCAACAAAAAGATAATTCTTTTAAATAATTACCCTTCAAGG-GAGAGCCAGAAATGAAAGGAGAACATGAACTCACCGT-AAAGGAACGATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCTACGGATTAATTGTGAGttttttgagacggagtct-cactctgtcgcccaggctgga-gtgcaa
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       395293 206 +  25972781 TTAAAA-ATGAGATCATTGCCAACAAAAAGATAATTCTTTTAAATAATTACCCTTAAAGGAGAGAGCC-GAAATGAAAGGAGAACATGAACTCACCGT-AAAGGAGCGATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCTACGGATTAATTGTGAGttttttgagacggagtct-cgctctgtcgcccaggctgga-gtgcag
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       262377 206 -   1025902 TTAAAA-ATGAGATGATTGCCAACAAAAAGATAATTCTTTTAAATAATTACCCTTCGAGG-GAGAGCCAGAAATGAAAGGAGAACATGAACTCACCGT-AAAGGGGCAATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCCACGGATTAATTGTGAGttttttgagatggagtct-cgctgtgtcacccaggctgga-gtgcag
i cerAty1.NW_012001098v1       C 0 I 4214
s chlSab2.chrUn_KE147541v1     206440 206 -    811265 TTAAAA-ATGAGATGATTGCCAACAAAAAGATAATTCTTTTAAACAATTACCCTTCAAGG-GAGAGCCAGAAATGAAAGGAGAACATGAACTCGCCGT-AAAGGAGCGATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCCTCGGATTAATTGTGAGttttttgagacggagtct-cgctgtgtcacccaggctgga-gcgcaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       228385 206 -    350446 TTAAAA-ATGAGATGATTGCCAACAAAAAGATAATTCTTTGAAATAATTACCCTTCGAGG-GAGAGCCAGAAATGAAAGGAGAACATGAACTCACCGT-AAAGGAACAATTTGGAATTTCTTTTGGCTACTGGTATCACCAGGTGTCCATGGATTAATTGTGAGttttttgagacggaatct-cgctgtgtcgcccaggctgga-gtgcag
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             259626 199 +    465904 TTAAAATATAAGATGATTGCCAACAAAAAGACAATTCTTTTAAATAATTATCCTTCACAG-GAGAGCCAAAAATCA------CACATGAACACAGGGT-AAAAGAGCAATTTGAAATTTCTTTTGGATACTGATATCGCTGGGTATCCAGACAGTCAttctt-gctttttgggacagagtct-tgctctgtta-tcaggctgga-ctgcag
i saiBol1.JH378345             I 225 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=454732.000000
s hg38.chrX_KI270880v1_alt     223184 142 +    284869 tggcgtgatctcggctcactacaacctctgcct-cccaggttcaagcgattctctt-gcctcagcctcccaagtagctgggactacaggcacccgccaccacgcccagctaatttttgtattttt--agtagagac-ggggtttcac
s panTro5.chrX                 406453 142 + 155549662 tggcgtgatctcggctcactacaaccttcgcct-cccgggttcaagccattctcct-gcctcagcctcccaaggagctgggattacaggcacctgccaccacacccagctaatttttgtattttt--agtagagac-ggggtttcac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 136208 144 -    177848 tggcatgatctcggctcactacaaccttcgcct-cccgggttcaagccattctcct-gcctcagcctcctgagtagctgggactacaggctcataccaccacggccggctaatttttgtatttttaaaatggagac-agggtttcac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       297162 142 +    417917 tggcacgatctcggctcactgcaacctccgcct-cccgggttcaagcgattctctcggcctcagcctcctgagtagctggaatgacagacgcccgccaccacg-ctgggtaatttttgtattttt--agtagagac-ggagttttat
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146050 141 + 149150640 -ggtgcgatctcggctcagtgcaacctccacct-cccgggttcaagcgattctcct-gcctcagcctcccaagtagctgggattacaggcacctgccaacacgcacaactaa-ttttgtattttt--agtagagacgggggtttcac
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        14203 140 -     20017 -ggtgcgatctcggctcagtgcaacctccacct-cccgggttcaagcgattctcct-gcctcagcctcccaagtagctgggattacaggcacctgccaacacgcacaactaa-ttttgtattttt--agtagagac-ggggtttcac
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       395499 140 +  25972781 -ggtgcgatctcggctcagtgcaacctccacctccccgggttcaagcgattctcct-gcctcagcctcccaagtagctgggattacaggcacctgccaacacgcacaactaa-ttttgtattttt--agtagagac--gggtttcac
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     206646 139 -    811265 -ggtgcgatctcagctcaccgcaacctccgcct-cccgggttcaagtgattctcct-gcctcagcctcccgagtagctggggtgacaggcacctgccaccatgcacaactaa-ttttgtattttt--agtagagac-ggggttt-tc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       228591 141 -    350446 tggtgcgatctcggctcagtgcagcctccacct-cccgggttcaagcgattctcct-gcctcagcctcccaagtagctgggatcacaggcacctgccaccatgcacaactaa-ttttgtattttt--agtagagac-ggggtttctc
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             259825 142 +    465904 gggtgcgatctcggttcactgcaacctccgcct-cacggggtcaagcgattctcat-gcctcagcctcttcagtagctgtgatgacaggcgcctgacaccacgcctggctaatttttgtattttt--agtagagac-ggggtttctc
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I

a score=90429.000000
s hg38.chrX_KI270880v1_alt     223326 32 +    284869 cgtgttggtcaggctggtcttgaactcctgac
s panTro5.chrX                 406595 32 + 155549662 catgttggtcaggctggtcttgaactcctgac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 136352 32 -    177848 catattggccaggctggtcttgatctcttgac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       297304 31 +    417917 catgttggtcaggctggtc-tgaactcctgac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146191 32 + 149150640 catgttggccaggctggtctcgaactcctgac
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       395639 32 +  25972781 catgttggccaggctggtctcgaactcctgac
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     206785 32 -    811265 catgttggtcaggctggtctcaaactcccgac
i chlSab2.chrUn_KE147541v1     C 0 I 623
s manLeu1.NW_012108508v1       228732 32 -    350446 catgttggccaggctggtctcaaactcctgac
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             259967 32 +    465904 catggtgcccaggctggtctcgaactcctgac
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=98287.000000
s hg38.chrX_KI270880v1_alt     223358 48 +    284869 atcaagtagtccacctgcctgggcct-cccaaagtgctgggattacagg
s panTro5.chrX                 406627 48 + 155549662 ctcaagtaatccacctgcctgggcct-cccaaagtgctgggattacagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 136384 46 -    177848 ctc--gtgatccacccacttcagcct-cccaaagtgctgagattacagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       297335 49 +    417917 ctcaagtaatccacctgcctgggcctccccaaagtgctgggattacagg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146223 48 + 149150640 ctcaggtgattcacccgcctcagcct-cccaaagtgctgggatgacagg
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       395671 48 +  25972781 ctcaggtgatcccaccgcctcagcct-cccgaagtgctgggatgacagg
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       228764 48 -    350446 ctcaggtgatccacccgcctcggcct-cccaaagtgctgggatgacagg
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             259999 48 +    465904 ctcaagtgatccacccgcctcggcct-cccaaagtgctgggatgacagg
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=7425.000000
s hg38.chrX_KI270880v1_alt     223406 4 +    284869 cgtg
s panTro5.chrX                 406675 4 + 155549662 cgtg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       297384 4 +    417917 catg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146271 4 + 149150640 cgtg
i rheMac8.chrX                 C 0 I 9
s macNem1.NW_012017243v1       395719 4 +  25972781 cgtg
i macNem1.NW_012017243v1       C 0 I 2206
s manLeu1.NW_012108508v1       228812 4 -    350446 cgtg
i manLeu1.NW_012108508v1       C 0 I 2402
s saiBol1.JH378345             260047 4 +    465904 cgtg
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430 0 -    177848 C

a score=9885.000000
s hg38.chrX_KI270880v1_alt     223410 29 +    284869 caccagtgcatctggctaa------tttttttttt
s panTro5.chrX                 406679 29 + 155549662 caccagtgcatctggcTAA------tttttttttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       297388 29 +    417917 caccagtgcctctggcTAA------TTTTTTTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             260051 35 +    465904 agccaccgcgcccggccAGGACAGCTTTTTTTCTT
i saiBol1.JH378345             C 0 T 609
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430  0 -    177848 C

a score=52.000000
s hg38.chrX_KI270880v1_alt     223439 4 +    284869 tttt----
s panTro5.chrX                 406708 4 + 155549662 tttt----
i panTro5.chrX                 C 0 I 34
s gorGor5.CYUI01015925v1       297417 8 +    417917 TTTttttt
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 146275 9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430 0 -    177848 C

a score=10352.000000
s hg38.chrX_KI270880v1_alt     223443 141 +    284869 gtatttttagtagagacggg-gtttcaccatgttggccaggctggtctcGAACTCCTGACCTCCAGTGATCCGCCTGCCTCGGCCTCCCGAAGTGCTAACATTACAGGCATGAGCCACCACACCTGGCTGGACATCTTTCAA
s gorGor5.CYUI01015925v1       297425 134 +    417917 gtatttttagtagagatgggtgtttcaccatgttggccaggctggtctcgaactcctgacc--------ttcttctgccttggcctcccaaagtgctaacattacaggggtgagccaccacgcctggcTGGACATCTTTCAA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e panTro5.chrX                 406712  34 + 155549662 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       366147 977 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430   0 -    177848 C

a score=7523.000000
s hg38.chrX_KI270880v1_alt     223584 33 +    284869 AGACAACATTCAGGTCTTTTAATACATGCAGGT
s gorGor5.CYUI01015925v1       297559 32 +    417917 AGGCAACATTCA-GTCTTTTAATACATGCAGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       367124 33 +   1230721 AGACAACATTTGGGTCTTTTAATACATGCAGGT
i colAng1.NW_012115411v1       I 977 I 7576
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e panTro5.chrX                 406712 34 + 155549662 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430  0 -    177848 C

a score=368.000000
s hg38.chrX_KI270880v1_alt     223617  9 +    284869 Cttttt--ttt
s gorGor5.CYUI01015925v1       297591 11 +    417917 Cttttttcttt
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e panTro5.chrX                 406712 34 + 155549662 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430  0 -    177848 C

a score=68053.000000
s hg38.chrX_KI270880v1_alt     223626 278 +    284869 ttttttttttttttttctgagacggaatctcactctgtcagcaggctggagtgcaatggcgcaatctcggctccctgcaacctccgccccctggtttcaagcgattctcctgcctcagcctcctgagtaggtgggactacaggagcataccaccacgcctggctaatttttgtatttttaaaatagagacagggtttcaccacgttggccaggctggtcttgatctcttgacctcgtgatccacccacctcagcctcccaaagtgctgggattacagg
s panTro5.chrX                 406746 278 + 155549662 ttttttttttttttttctgagatggaatctcactctgtcaccaagctggagtgcaatagtgcaatctcggctccctgcaacctccgccccctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggctcataccaccacggccggctaatttttgtatttttaaaatggagacagggtttcaccatattggccaggctggtcttgatctcttgacctcgtgatccacccacttcagcctcccaaagtgctgagattacagg
i panTro5.chrX                 I 34 C 0
s gorGor5.CYUI01015925v1       297602 273 +    417917 ctttttttttttttttctgagacggaatctcactctgtcaccaagctggagtgcaatggcgcaatctcggctccctgcaacct-cgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggctcataccaccacgcctggctaatttttgtattttttaaatacagacagggttc--acacgttggcc-ggctggtcttgatctcttgacctcgtgatcca-ccacctcagcctcccaaagtgctgggattacagg
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 136430   0 -    177848 C

a score=328054.000000
s hg38.chrX_KI270880v1_alt     223904 686 +    284869 catcagccactgtgcctggccCATGCAGGTC-TTTTAATACGTGCTGAGAACCTGTTTTCTTGTCgtctggggcctcctgcattcgttgacctgtgaccatacatcccatcaccttctatctcctctacctctctatggaaactccctctgcctccctggctcgtggtctcttgtgt-ttacctttaaggcccagccagataacccagcataatcccccatttcaagacCCCTTATCTGAATGGGATCAGCAAAGTTCCTTTTGCCAGACAGCCTACTGCATCCACAAGTTCCCGAGATTTGGATGTGTATGTGTATCAGTTCGTAC-TCACACTGCTATaaagat-cctacctggccagctgcagtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagttccagaccagcctggcaacagggtgaaaccccatctctactaaaaatac--aaaattagctgggcgtggtggcacatacctgtcatcccagctacttaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgtggt-gagccgagattgcgccattgcactccagcctgggaaacaagagtgaaattccggctcaaaaaaacaaatcaaaacaaaacaaattcc-tacctaagatttgcagccgggcgtg
s panTro5.chrX                 407024 656 + 155549662 catcagccactgctcctggccCATGCAGGTC-TTTTAATACATGCCGAGAACCTGTTTTCTTGTCGTCTGGGG-------------------------CATACATCCCATCACCTTCTCTCTCCTCTACCTCTCTATGGAAACTccctctgcctccctggctcgtggactctagtga-ttacctttaaggcccacccagataacccagcataatcccccatttcaagaccccttatctgagtgggatcagcaaagttccttttgccagacagcctactgcatccacaagctcccgagatctggatgtgTATGTGTATCAGTTCGTAC-TCACACTGCTATAAAGAT-CCTACCTggccagctgcagtggctcacccctgtaataccagcactttgggaggctgaggcaggcagatcacctgagatcaggagtttgagaccagcctcacaacatggtgaaaccccatctctactaaaaatac--aaaattagctgggcgtggtggcacatacctgtcatgccagctacttaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgccgt-gagccgagattgcgccactgcactccagcctgggaaacaagagtgaaattctggctcaaaaaaa-----caaaacaaaacaaaTTCC-TACCTAAGATTTGCAgccgggcgtg
i panTro5.chrX                 C 0 I 429
s panPan2.chrUn_NW_014024190v1 136430 654 -    177848 catcagccactgcgcctggccCATGCAGGTC-TTTTAATACATGCCGAGAACCTGTTTTCTTGTCGTCTGGGG-------------------------CATACATCCCATCACCTTCTCTCTCCTCTACCTCTCTATGGAAACTccctctgcctccctggctcgtggactctagtga-ttacctttaaggcccacccagataacccagcataatcccccatttcaagaccccttatctgagtgggatcagcaaagttccttttgccagacagcctactgcatccacaagctcccgagatctggatgtgTATGTGTATCAGTTCGTAC-TCACACTGCTATAAAGAT-CCTACCTggccagctgcagtggctcacccctgtaataccagcactttgggaggctgaggcaggcagatcacctgagatcaggagtttgagaccagcctcacaacatggtgaaaccccatctctactaaaaatac--aaaattagctgggcgtggtggcacatacctgtcatgccagctacttaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgccgt-gagccgagattgcgccactgcactccagcct-ggaaacaagagtgaaattctggctcaaaaaa------caaaacaaaacaaaTTCC-TACCTAAGATTTGCAgccgggcgtg
i panPan2.chrUn_NW_014024190v1 C 0 I 428
s gorGor5.CYUI01015925v1       297875 688 +    417917 catcagccactgtgcctggccCATGCAGGTCTTTTTAATACGTGCTGAGAACCTGTTTTCTTGTCGTCTGGGGCCTCCTGCATTCGTTGACCTGTGACCATACATCCCATCACCTTCTCTCTCCTCTACCTCTCTATGGAAACTccctctgcctccctggctcgtggactctagtgatttacctttaaggcccgtccagttaa-ccagcataatccctcatttcaagaccccttatctgaat-ggatcagcaaagttccttttgccaaacagcctactacatccacaagctcccgagatctggatgtgTATGTATATCAGTTCATACTTCACACTGCTATAAAGATCCCTACCTggccaggtgccagggctcacacctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggcaacatggtgaaaccccatctctactaaaaatataaaaaattagctgggcatggtggcgcatgcctataatcccagctacttaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgccgtggagctgagattgcgccattgcactccagcctgggaaacaagagtgaaactccagctcagaacaaaa---caaaacaaaacaaaTTCCTTACCTAAGATTCGCAGCTGGGT-Tg
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=73287.000000
s hg38.chrX_KI270880v1_alt     224590 177 +    284869 gtggctaatgcttgcaatcccagcactttgggaggctgaggcaggtggatcacttgag-gtcaggaattcgagaccagcctggacaacatgatgagaccc-cgtctccactaaaaatacaaaatttagccaggtgtggtggcacatgcctgtaatccaagctactcgggaggctgaggc
s panTro5.chrX                 408109 175 + 155549662 gtggctgatgcctgtaatcttggcactttgggaggccgaatcgggtggatcacgtgag-gtcaggagttcgagaccaggctgaccaacatgctgaaaccc--gtttctactaaaa-tacaaaaattagccaggcttggtggggggtgcctgtaatcccagctacttgggaggctgagga
i panTro5.chrX                 I 429 C 0
s panPan2.chrUn_NW_014024190v1 137512 175 -    177848 gtggctgatgcctgtaatcttggcactttgggaggccgaatcgggtggatcacgtgag-gtcaggagttcgagaccaggctgaccaacatgctgaaaccc--gtttctactaaaa-tacaaaaattagccaggcttggtggggggtgcctgtaatcccagctacttgggaggctgagga
i panPan2.chrUn_NW_014024190v1 I 428 C 0
s gorGor5.CYUI01015925v1       298563 178 +    417917 gtgtctaatgcttgtaatccaggcactttgggaggctgaggcaggt-tatcacttgagcgtcaggaattcgagaccagcctggacaacatggtgagacccccgtctccactaaaaatacaaaatttagccaggtgtggtggcacatgcctgtaatcccagctgctcaggaggctgaggc
i gorGor5.CYUI01015925v1       C 0 I 501
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=48506.000000
s hg38.chrX_KI270880v1_alt     224767 108 +    284869 aggagaattgcttg-aacccaggaggcagaggttgcagtgagtcaagaacacgccactgcactccagcctgggcaacagagcgagactccatctaaaaaaaaatttttt
s panTro5.chrX                 408284 107 + 155549662 aggagaattgcttg-aacccaggaggcagagcttgcagtgagtcaagaacacgccactgcactgcagcctgggcaacagagcgagactccatgtaaaaaaaa-tttttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 137687 106 -    177848 aggagaattgcttg-aacccaggaggcagagcttgcagtgagtcaagaacacgccactgcactgcagcctgggcaacagagcgagactccatgtaaaaaaaa--ttttt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       299242 108 +    417917 aggagaattgcttgaaacccgggaggcagaggttgcagtgagtcgagatcatgccattgcactccagcctgggcgacagagcaagactccgtctaaaaaaaa-aaaaat
i gorGor5.CYUI01015925v1       I 501 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             296845 3882 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=280675.000000
s hg38.chrX_KI270880v1_alt     224875 509 +    284869 ttccagaaagcaacgatttatgtggttttttaattgtgtgctattct---------gatg---------------------tgtctcgcatgggatatgactcatctttctgtctggtgcccccaccatgctgtagacacaatccgtccattagtcacttagcaaccgcttcagtgatcagagcgagtgttgtgg----tatcttaatgcttgtgttgaag-aacctttacttgacttaaaaaatgg-ccccggcgtgcaagaggagtgatgcttgagta-tttctataatggttctatcttactattagttattgttgtttgtctttggctctgcctaacttacaaactaaactttagaataggtatgtgcgtctaggaggaagcacagcataTACAGG-TCTTGCTGCTACTGGATGTTTCCGGCATCCCC-GTGGGGTCTTGAAATGCAT----------CCTTCATGGATAAAAGGAGACTTTTGTAGATGCTGCACTGGTGATTTTCATTTCTGTCAATGTTAGGGATTGAACATTGTTATATGGTGATTGCT
s panTro5.chrX                 408391 508 + 155549662 ttccagaaagcaacgatttatgtgtttttttaattgtgggctattct---------gatg---------------------tgtctcgcctgggatatgactcatctttctgtctggtgcccccaccatgctgtagacacaatccatccattagtcacttagcaaccaccttagtgatcagagcgagtgttgtgg----tatcttaatgcttgtgttgaag-aacctttacttgacttaaaca-tgg-ccccagcgagcaagaggagtgatgcttgagta-tttttataatggttccatcttactattagttattgttgtttgtctttggctctgcctaacttataaactaaactttaacatacattcatgcatctaggaggaagcacagcatataccgg-ttttggtgctactggatgtttccggcatcccc-gtggggtcttgacatacat----------ccttcatggataaaaggagactTTTGTAGATGCTGCACTGGTGATTTTCATTTCTGTCAACGTTAGGGATTGAACATTGTTATATGGTGATTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 137793 507 -    177848 ttccagaaagcaacgatttatgtg-ttttttaattgtgggctattct---------gatg---------------------tgtctcgcctgggatatgactcatctttctgtctggtgcccccaccatgctgtagacacaatccatccattagtcacttagcaaccaccttagtgatcagagcgagtgttgtgg----tatcttaatgcttgtgttgaag-aacctttacttgacttaaaca-tgg-ccccagcgagcaagaggagtgatgcttgagta-tttttataatggttccatcttactattagttattgttgtttgtctttggctctgcctaacttataaactaaactttaacatacattcatgcatctaggaggaagcacagcatataccgg-ttttggtgctactggatgtttccggcatcccc-gtggggtcttgacatacat----------ccttcatggataaaaggagactTTTGTAGATGCTGCACTGGTGATTTTCATTTCTGTCAACGTTAGGGATTGAACATTGTTATATGGTGATTGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       299350 508 +    417917 tccaggaaagcaacgatttatgtt-ttttttaattgtgtgctattct---------gatg---------------------tgtctcgc-tgggatatgactcatctttctgtctggtgtccccaccatgctgta-acacaatccgtccattagtcacttagcaaccgccttagtgatcagagcgagtgttgtgg----tatcttaatgcttgtgttgaag-aacgtttacttgacttgaaaa-tggcccccagcgtgcaagaggagtgatgcttgagtattttttataatggttctatcttactattagttattgttgttcgtctttggctctgcctaacttataaactaaactttaatatacgttcgtacgtctaggaggaagcacagcatataccggtttttggtgctactggatgtttccggcatcccctgtggggtcttgacatacat----------ccttcatggataaaaggagactCTTGTAGATGCTGCACTGGTGATTTTCATTTCTGTCAACGTTA-GGACTGAACATTGTTATATGGTGATTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             300727 519 +  11138919 ttgcaggaataaacaatttacaag--tttcaaatggtgtgctcttctgtgtagcacgatgaaatctctcaccaccctgctctgtcctgcctgagacaggaatcattcctttgctcagtgtatgcaa---accgtggttgctgccggtgggctcgtcacacagcacccatc-----gaggggagcagatgccctgtccactactgcaactcttgtattcaagtgacctacactgtacgtaataa-cag-ccccaacgtgcaagagctgtgatgctggtgca-tccttgtcaatgttctattttattatcagttattcctgcgagtct--------------cttat---------tTCCTCATTGCCGTGTCTCTCTAGGAAAAATCTTCATTTATATAGA-GTTGAGGAGTCCTTGCAGTTTTTCACATGCCC--TGGGGTCTTACCATGCTCCCCACCACCACCTCTGAGGGTAACTTGGCACTGCTGTGTACTCTGTGGCAACATTTGGAATTTCTGTTGATACCAGAGATTGAATATTCCTATATGGGGAGTGCC
i otoGar3.GL873584             I 3882 I 304
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=10456.000000
s hg38.chrX_KI270880v1_alt     225384 22 +    284869 TCGTCAACCTGATGTTTGGTTG
s panTro5.chrX                 408899 22 + 155549662 TCATCAACCTGATGTTTGGTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138300 22 -    177848 TCATCAACCTGATGTTTGGTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       299858 21 +    417917 TCGTC-ACCTGATGTTTGGTTG
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301246 304 +  11138919 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=47938.000000
s hg38.chrX_KI270880v1_alt     225406 105 +    284869 TTCATGTTTGGAAACCCAGACTCCAAAAGGAGGGC-AAACACCAGAGGGGATATTTGCTGGTT--CTCAACCTGCCCTACGTGATTGCGTTTG-TTTCAGAAGGGGCTG
s panTro5.chrX                 408921  74 + 155549662 TTCATGTTTGGAAACCCAGACTCCAAAAGGAGGGC-AAACACCAGAGGG-ATATTTGCTGGTT--CTCAAGCTGCCCT-------------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138322 104 -    177848 TTCATGTTTGGAAACCCAGACTCCAAAAGGAGGGC-AAACACCAGAGGG-ATATTTGCTGGTT--CTCAAGCTGCCCTGCGTGATTGCGTTTG-TTTCAGAAGGGGCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       299879 108 +    417917 TTCATGTTTGGAAACCCAGACTCCAAAAGGAGGGCAAAACACCAGAGGG-ATATTTGCTGGTTTGTCAAAGCTGCCCTACGTGATTGCGTTTGTTTTCAGAAGGGGCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             301550  96 +  11138919 TTGATTTTTAGAAACCCAGACTGCAAAACTAGAAC-CCATGCCAGAG---ACCTTTGCCTGGT--CCCAAACC------CATGACTGCCTTTA-TCATAGAAGGGGATG
i otoGar3.GL873584             I 304 T 400
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=73911.000000
s hg38.chrX_KI270880v1_alt     225511 166 +    284869 TAAGGAGCTCTTGCCTGCCCCATCTTTCTCTCCCCAACATGTCCACGCATTCCACA-CCCAATAT-GGTGTCCGTAGGACGTTGACATTTGCAC-ACATTGCACACCCAATATGGTGGCCATAGAATGTTGACATTTCCTTGCATTCCACACCTAATATGGTGTCCATA-----------------------------------------------
s panTro5.chrX                 408995 157 + 155549662 ---------CTTGCCTGCCCCATCTTTCTTTCCCCCACATGTCCACGCATTCCACA-CCCAATAT-GGCGTCTGTAGGACGTTGACATTTGCAC-GCATTGCACACTCAATATGGTGGCCGTAGAATGTTGACATTTGCTTGCATTCCACACCCAATATGGTGTCGATA-----------------------------------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138426 166 -    177848 TAAGGAGCTCTTGCCTGCCCCATCTTTCTTTCCCCCACATGTCCACGCATTCCACA-CCCAATAT-GGCGTCTGTAGGACGTTGACATTTGCAC-GCATTGCACACTCAATATGGTGGCCGTAGAATGTTGACATTTGCTTGCATTCCACACCCAATATGGTGTCGATA-----------------------------------------------
i panPan2.chrUn_NW_014024190v1 C 0 T 42
s gorGor5.CYUI01015925v1       299987 216 +    417917 TAAGGAGCTCTTGCCTGCCCCGTCTTTCTCTCCCCCACATGTCCATGCATTCCACACCCCAATATGGGTGTCTGTAGAACATTGACATTTGCACGGCATTGCACACCCAATATGGTGGCTGTAGAATGTTGACATTTCCTTGCATTCCACACCCAATATGGTGTCCGTTAGGACATTGACATTTGCACGCATTCCACACCCAATATGGTGTCTGTA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=-563.000000
s hg38.chrX_KI270880v1_alt     225677 35 +    284869 GGATGTTGACATTTCCATGCATTACACACCCAATC---------------
s panTro5.chrX                 409152  6 + 155549662 GGATGT--------------------------------------------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       300203 50 +    417917 GGACATTGACATTTGCACGCATTGCACACCCAATATGGTGGCCGTAGAAT
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138592 42 -    177848 T

a score=5685.000000
s hg38.chrX_KI270880v1_alt     225712 17 +    284869 GTTGACA-TTTCCATGCA
s panTro5.chrX                 409158 15 + 155549662 --TGACC-TTTCCATGCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138550 17 -    177848 GTTGACA-TTTGCTTGCA
i panPan2.chrUn_NW_014024190v1 T 42 C 0
s gorGor5.CYUI01015925v1       300253 18 +    417917 GTTGACATTTTCCATGCA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             260086 609 +    465904 T
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=51743.000000
s hg38.chrX_KI270880v1_alt     225729 70 +    284869 TTCCACACCCAATATGGTGTCCGTAGGATGTTGACATTTCCATGCATT-CCACACCCAATATGGTGTCCGT
s panTro5.chrX                 409173 70 + 155549662 TTCCACACCCAATATGGTGTCGATAGGATGTTGACCTTTCCATGCATT-CCACACCCAATATGGTGTCCGT
i panTro5.chrX                 C 0 T 92
s panPan2.chrUn_NW_014024190v1 138567 70 -    177848 TTCCACACCCAATATGGTGTCGATAGGATGTTGACCTTTCCATGCATT-CCACACCCAATATGGTGTCCGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       300271 71 +    417917 TTCCACACCCAATATGGTGTCCGTAGGATGTTGACATTTCCATGCATTCCCACACCCAATATGGTGTCCGG
i gorGor5.CYUI01015925v1       C 0 I 1
s saiBol1.JH378345             259477 60 +    465904 TTCCACACCCAATATGGTGGCCATAGGATGTTGACCGT-----------CCACACCCAATATGGTGGCCGC
i saiBol1.JH378345             T 609 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=422.000000
s hg38.chrX_KI270880v1_alt     225799 1 +    284869 G
s panTro5.chrX                 409151 1 + 155549662 A
i panTro5.chrX                 T 92 C 0
s panPan2.chrUn_NW_014024190v1 138637 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 T 46
s gorGor5.CYUI01015925v1       300343 1 +    417917 A
i gorGor5.CYUI01015925v1       I 1 I 1
s saiBol1.JH378345             259537 1 +    465904 A
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275 9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C

a score=6185.000000
s hg38.chrX_KI270880v1_alt     225800 11 +    284869 GGATGTTGACA
s panTro5.chrX                 409152 11 + 155549662 GGATGTTGACC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138592 11 -    177848 GGATGTTGACC
i panPan2.chrUn_NW_014024190v1 T 46 C 0
s gorGor5.CYUI01015925v1       300345 11 +    417917 GATTGTTGACA
i gorGor5.CYUI01015925v1       I 1 I 105
s saiBol1.JH378345             259538 10 +    465904 GGATGTTGAC-
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=23400.000000
s hg38.chrX_KI270880v1_alt     225811 34 +    284869 TTTCCATGCATTCCACACCCAATATGGTGGCCGT
s panTro5.chrX                 409163 34 + 155549662 TTTCCATGCATTCCACACCCAATATGGTGTCGAT
i panTro5.chrX                 C 0 I 46
s panPan2.chrUn_NW_014024190v1 138603 34 -    177848 TTTCCATGCATTCCACACCCAATATGGTGTCCGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       300461 34 +    417917 TTTCCATGCATTCCACACCCAATATGGTGTCCGT
i gorGor5.CYUI01015925v1       I 105 C 0
s saiBol1.JH378345             259548 25 +    465904 --------CA-TCCACACCCAATATGGTGGCCAT
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C

a score=35409.000000
s hg38.chrX_KI270880v1_alt     225845  61 +    284869 AGGATGTTGACATTTCCATGCAT------------------------------------------TACACACCCAATATGGTGGCCGTAGAATGTTGACCATC
s panTro5.chrX                 409243  61 + 155549662 AGGATGTTGACATTTCCATGCAG------------------------------------------TACACACCCAATATGGTGGCTGTAGAATGTTGACCATC
i panTro5.chrX                 I 46 C 0
s panPan2.chrUn_NW_014024190v1 138637  61 -    177848 AGGATGTTGACATTTCCATGCAG------------------------------------------TACACACCCAATATGGTGGCTGTAGAATGTTGACCATC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       300495 101 +    417917 AGGATGTTGACATTTCCATGCATTACACACCCCAATATGGTGGCCGAGATGTACATTTCCATGCATACACACCCAATATGGTGGCCGT--GATGTTGACCATC
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             259573  51 +    465904 AGGATGTTGAC---------CA-------------------------------------------CCCACACCCAATATGGTGGCCATGGGATATTGACCACC
i saiBol1.JH378345             C 0 I 3357
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=76030.000000
s hg38.chrX_KI270880v1_alt     225906 176 +    284869 CCAAGACCATGTCGGCTTTGATATTGCCACGGTGTGAAGATTTCTGttt-ttgttttttgttttttttttttttggaaacggaatctctctctgtcacccaggctggagtgcagtggcgcgatctcggct-cactacaacctccgcctcccgggttc-aagtgattctcctgcttcagc
s panTro5.chrX                 409304 166 + 155549662 CCAAGACCATGTCGGCTTTGATATTGCCACGGTGTGAAGAtttctttct-tt----------ttttttttttttggaaacggaatctctgtctgtcgcccaggctggagtgcagtggcgtgatctcggct-cactacaacctccgcctcccgggttc-aagtgattctcctgcctcagc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 138698 163 -    177848 CCAAGACCATGTCGGCTTTGATATTGCCACGGTGTGAAGAttc---ttt-tt----------tttttttgttttggaaacggaatctctgtctgt-gcccaggctggagtgcagtggcgtgatctcggct-cactacaacctccgcctcccgggttcaaagtgattctcctgcctcagc
i panPan2.chrUn_NW_014024190v1 C 0 I 1047
s gorGor5.CYUI01015925v1       300596 167 +    417917 CCAAGATCATGTCGGC-TTGATATTGCCACGGCGTGAAGATTTCAGtttgtt----------ttttttttttttggaaacggaatctcactctgtcacccaggctggagtgcagtggcgcgatctcagctccactacaacctccgcctcctgggttc-aagcgattctccggcctcagc
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C

a score=44392.000000
s hg38.chrX_KI270880v1_alt     226082 185 +    284869 ctcccgagtagctgggactacaggcacctgccacc-atgcccggctaattttttgtatttttagtagagacaggg-tttcaccatgttagccaggatggtct-cgatctcctgac------ctcatgatcctcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcacctggccATAAGA
s panTro5.chrX                 409470 185 + 155549662 ctcccgagtagctgggattacaggcacccgccacc-acacctggctaattttttgcatttttagtagagacaggg-tttcaccatgttagccaggatggtct-cgatctcctgac------ctcatgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacctggccATAAGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       300763 192 +    417917 ctcccgagtagctggaattacaggcaccccccaccaacacccggctaattttttgtatttttagtagagacggggttttcaccatgttagccaggatggtctccgatctcctgaccaccgtctca-gatcctcccgcctcggcctcccaaagtgct-ggattacaggtgtgagccactgcacctggccATAAGA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301646 400 +  11138919 T
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=5032.000000
s hg38.chrX_KI270880v1_alt     226267 24 +    284869 tttca----tttttttt-ctgtt-gtttta
s panTro5.chrX                 409655 25 + 155549662 TTTCA----tttttttttctgtt-gtttta
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       300955 25 +    417917 TTTCA----tttttttt-ctgttggtttta
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             301246 24 +  11138919 TTTCAAAGCtttttttt----tt-ttttt-
i otoGar3.GL873584             T 400 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     206817 623 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=87047.000000
s hg38.chrX_KI270880v1_alt     226291 142 +    284869 ttttttga-gatggagtctcgctctgtcacccaggctctagtgcaatggcacaatctcagctcactgcaacctccacctcccgggttcaggcgattctcctgcctc-agcctctcgagtagctgggattacaggtgccc-gccac
s panTro5.chrX                 409680 142 + 155549662 ttttttga-gatggagtctcgctctgtcacccaggctctagtgcaatggcacaatctcagctcactgcaacctccacctcccgggttcaggcgattctcctgcctc-agcctctcgagtagctgggattacaggtgccc-gccac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       300980 145 +    417917 ttttttgaggaaggagtctcgctctgtcacccaggctctagtgcaatggccaaatctcagctcactgcaacctccacctcccaggtttcaggtattctcctgcctcaagcctcttgagtagctgggattacaggcgcctagccac
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     207440 142 -    811265 ttttttga-gacagagtctcgctctgtcgcccaggctggcgtgcggtggcgcgatctcggttcactgcaaggtccgcctcccgggttcaagtgattctcccgcctc-agcctcctgagtagctgggacgacagctccac-gccac
i chlSab2.chrUn_KE147541v1     I 623 I 14
s otoGar3.GL873584             301270 139 +  11138919 tttggtta-gccagtgtctcactttgtcactcaggctagagtggtatggcattat---aactcacagcaacctcaaacttgtgagttcaagcaattctctggcctc-agcctcctgagtagctgggactacaggtgccc-accac
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=3717.000000
s hg38.chrX_KI270880v1_alt     226433 13 +    284869 c-acgcccggataa
s panTro5.chrX                 409822 13 + 155549662 c-acgcccggataa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301125 14 +    417917 caacgcccggataa
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             301409 13 +  11138919 -aacacctgactaa
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     207582 14 -    811265 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=81970.000000
s hg38.chrX_KI270880v1_alt     226446 175 +    284869 ttttttgtatttttagtagagatggggtttcaccatgttaaccaggctggtcttcatctcctgacctc--gtgatctgcccgcctcggcctccga-aagtgctgggatgacaggcatgagccaccgcgcccagccAGAA-GATTTCAtt--ttttctttttattttttt-cttttttga-gac
s panTro5.chrX                 409835 176 + 155549662 ttttttgtatttttagtagagatggggtttcaccatgttaaccaggctggtctcgatctcctgatctt--gtgatccgcccgcctcggcctccga-aagtgctgggatgacaggcgtgagccaccgcgcccggccAGAA-GATTTCACt--ttttctttttattttttttcttttttga-gac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301139 177 +    417917 tttttattatttttagtagagacgggg-ttcaccatgttaaccaggctggtcttgatctcctgacctc--gtgatctgcccgcctcggcctccga-aagtgct-ggatgacaggcatgagccatcacgcccagccAGAAGGATTTCAtttcttttcttttttttttttt-cttttttgacgat
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     207596 174 -    811265 ttttttgtatttttagtggagacggggtttcaccgtgttggccaggctgatctggaactcctgacctcgggtgatcctcccgcctcagcctccca-aagtgctgggatgacaggcgtgaaccaccgcgcctggccAGAA-GATTTCAtt--tttttttt---cttcttt-cttttttga-gat
i chlSab2.chrUn_KE147541v1     I 14 C 0
s otoGar3.GL873584             301422 143 +  11138919 ----------tttta---cagatggatcttgctcttgct---caggctggtctcgaacttgtgaacttaggccatccacctgccttagtctcccagaggccctgggagtataggtatgagccaccatgcctgacc-------TTTAAAG--TTTTG--------------ATTTTTAGA-AAC
i otoGar3.GL873584             C 0 I 207
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=5620.000000
s hg38.chrX_KI270880v1_alt     226621 18 +    284869 agaagcttgctctgtctc
s panTro5.chrX                 410011 18 + 155549662 ggaagcttgctctgtcac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301316 18 +    417917 tgaagcttggtctgtcac
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     207770 18 -    811265 atactctcgctctgtcgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301565 207 +  11138919 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       367157 7576 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=186720.000000
s hg38.chrX_KI270880v1_alt     226639 268 +    284869 ccaggct-ggagggc-agtggcgcaatctcggctcactgcaacctcaacctcccgcgttca-ggcgattc-tcctgcctcagcctcccg-agtagctgt-gattacaggcacccgccaacacgcccggctaattttttgtatttttagtagagtcggggtt----tcaccgtgttaaccaggctggtcttgatct-----cctgacctc---------gtgatctgtctgcctcggcctaggaaagtgctgggatgacaggc--gtgaaccactgcgcc-cggccAGATTTTATT
s panTro5.chrX                 410029 268 + 155549662 ccaggct-ggagcgc-agtggcgcaatctcggctcactgcaacctcaacctcccgcgttca-ggcgattc-tcctgcctcagcctcccg-agtagctgt-gattacaggcacccgccaacacgcctggctaattttttgtatttttagtagagtcggggtt----tcaccgtgttaaccaggctggtcttgatct-----cctgacctc---------gtgatctgtctgcctcggcctaggaaagtgctgggatgacaggc--gtgaaccactgcgcc-cggccAGATTTCATT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301334 292 +    417917 ccaggctgggagtgcaagtggcgcaatctccgctcactgcaacctcaacctcccgcgttca-ggcgattcttcctgcctcagcctcctgtagtagctgtggattacaggcacccgccaacacgcctggctaattttttgtatttttagtagagacggggtccgtatcaccgtgttaaccaggctggtcttgatcttcctgcctgacctctgtctccaggtgatctgtctgcctcggcctag--aagtgctgggatgacaagcgtgtgaaccactacgcctcggccAGATTTCATT
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     207788 267 -    811265 ccaggct-ggagtgc-agtggcatgatctcggctcactgcgacctccacctcccgggttca-agcgattc-tccagcctcagcctcccg-agtagctgg-gatgacaggcacctgccaacatgtccagttaattttttgtgttttaagtagagacggggtt----tcgccatgttagccaggccggtctcgaact-----cctgacctc---------gtgatccgcccacctcggcctcccaaagtgctgggatgagaggc--gtgagccaccgcgcc-cggccAGATTTCA-T
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       374733 268 +   1230721 ccaggct-ggagtgc-agtggtcctatcttggctcactgcaagctctgcctcctgggttcacacccattc-tcctgcctcagcctcccg-agtagctgg-gattacaggcacctgccaccacacccagttaattttttg-atttttagtagagatggggtt----tcaccgtgttagccaggctggtctcgatct-----cctgacctc---------gtgatccaccctcctgggcctcccaaagtgctgggatgacaggc--gtgagccactgcccc-cggccAGATTTCATT
i colAng1.NW_012115411v1       I 7576 C 0
e canFam3.chrX                 350794 3337 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301565 207 +  11138919 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=6183.000000
s hg38.chrX_KI270880v1_alt     226907 6 +    284869 TTCTTC
s panTro5.chrX                 410297 6 + 155549662 TTCTTC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301626 6 +    417917 TTCTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     208055 6 -    811265 TTTTTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       375001 6 +   1230721 TTTTTC
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 354131 6 + 123869142 TCCTCC
i canFam3.chrX                 I 3337 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             301565 207 +  11138919 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275 9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=60616.000000
s hg38.chrX_KI270880v1_alt     226913 52 +    284869 TGCAGAAAGTGGCTTTGCTGGTGGGGAGCCATCCCCCAAGGAAGTGTGAAGT
s panTro5.chrX                 410303 52 + 155549662 TACAGAAAGTGGCTTTGCTGGTGGGGAGCCATCCCCCAAGGAAGTGTGAAGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301632 52 +    417917 TACAGAAAGTGGCTTTGCTGGTGGTGAGCCATCCCCCAAGGAACTGTGAAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     208061 52 -    811265 TACAGAAAGTTGCTTTGCTGGTGCAGAGCCATCCCCCAAGGAAGTGTGAAGT
i chlSab2.chrUn_KE147541v1     C 0 T 7672
s colAng1.NW_012115411v1       375007 52 +   1230721 TACAGAAAGTTGCTTTGTGGTTGCAGAGCCAACCGCCAAAGAAGTGTGAAGT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             301772 51 +  11138919 TACAGAGAAC-ACTTTGGCCATGTAGTGCCACCCCTCAAGGAGGCGTGCGGT
i otoGar3.GL873584             I 207 C 0
s canFam3.chrX                 354137 52 + 123869142 CTCAGAACCCAGCTTTGCACGTGCAGGCCCAACCCCCAAAGAGGTGTGAAGT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=219043.000000
s hg38.chrX_KI270880v1_alt     226965 370 +    284869 TCCTCTTGAAAAGGGTGAGAGTG-TTTTCTCTGCTTCCATGACCA----GGGCTA--AGTGGAAACATTGAATCAATATTAACCCCATCCAGTCTTCAAGGCCTT---TTTATGGgtg-tgtgtgta--------tgtgtgtgtgtgtgt--------gtgtgtgtATTTTCCAGAGACgtcaaccctctctct--gggataatgagagaaatttcctaaca-gagtacttctccctcgctcaaagggagtgacattttgtaatgctttctg-aaatcaagccattctgacccaatgacttTTcgatgagttaagggctaaatgaaTcagacgcgtgtgggttcaatttacttctcaacactttggcttaaaaGCCTTCCAGaaaaaaaaaa--aaagaaaa-g
s panTro5.chrX                 410355 364 + 155549662 TCCTCTTGAAAAGGGTGAGAGTG-TTTTCTCTGCTTCCACGACCA----GGGCTA--AGTGGAAACATTGAATCAATATTAACCCCATCCACTCTTCAAGGCCTT---TTTATGGgtg-tgtgtgt----------------gtgtgtgt--------gtgtgtgtATTTTCCAGAGACGTCAACCCTCTCTAT--GGGATAATGAGAGAAATTTCCCAACA-GAGTCCTTCTCCCTCGCTCAAAGAGAGTGACATTTTGTaatgctttctg-agatcaagccattctgacccaatgacttttcgatgagttaaggactaaatgaatcagacgcgtgtggattcaatttacttctcaacacattcgcttaagaGGCTTCCAGaaaaaaaaaag-aaagaaaaag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       301684 386 +    417917 TCCTCTTGAAAAGGGTGAGAGTGTTTTTCTCTGCTTCC-CGACCA----GGGCTAGCAGTGGAAACATTGAATCAATATTAACCCCATCCAGTCTTCAAGGCCTtgtgtgtgtggatgctgtgtgtgctgtgtgttgtgtgtgtgtgtgtggtgtgtggtgtgtgtgtTTTCCAGAGACGTCAACCCTCTCTCT---GGATAATGAGAGAAATTTCCTAACAGGAGTACTTCTCCCTCGCTCAAAGGGAGTGACATTTTGTaatgctttctg-aaatcaagccattctgacccaatgacttttc-atgagttaagggctaaatgaatcagacgcgtgtgaattcaatttacttctcaacacattcgcttaaaaGGCTTCCAGAAAAAAAAAA-------AAA-G
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       375059 336 +   1230721 TCCTCTTGGAAAGGGTGAGACTG-TTTTCTCTGCTTCCACAACCA----GGGCTA--AGTGGAAACCGTGAATTAATATTAAACCCATTCAGTCTTCAAGGCCTT---TTTAtgggtg-c----------------------gtgtgtgt--------gtgtgtgtATTTTCCAGAGAAGTCAACCCTCTCTCT--GGGATAACGAGAGAAATTTGCTAACA-CAGTACTTCTCCCTCGTTCAAAGGGAGTGACGCTCCGTAATGCTTTCTA-AAATCAAGCCGTTCTGACCCGGTGACATTTCAAT----------------------GACGCGTGTGGATTCAATTTACTTCTCAACACATGGGCCTAAAAGGCTTCCAGAAAAAAATAAATAAATAAAA-G
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             301823 352 +  11138919 TCACTCTGAAAAGGGTGAGACCC-TTTTCCCTGTTTCAATAGCCA----GGGGTG--AGCAAAAGCATTTGACTGGCATTCA-CCTGCTCAGTCTTTGAGAATGT---TTCTT---TG-T----------------------GTGTGTGT--------GTGTAGGTGCTTCCTATGGGACTCAGCCCTCCCTCTGGGGGATGAGGAGAGGTATCTGCTAACA-GACTTCTTCTCCCT-GCTCACAGGGAGTGACAATTCCTGAAGCGTCCCG-AAGTCAAGCCATTCTGACCCAAAGacacttcgatgagttaagt-ctaaacgaatcagacgcaggcgaattcaatttacttctcaacacatgggcttaaaaGGGCTCGGGCAATAAAAGG--AAAAAAAA-G
i otoGar3.GL873584             C 0 I 791
s canFam3.chrX                 354189 314 + 123869142 -CCCGCCAGGGAAGGTCAGCGTC-TCTTC-CTGCTGAGCGGGCCAGCGCGGGCTA--AGTGGAAACACACGGCC--CAGCAGCCCCGCTCCGTCTTGCGGATTTC---CT------TG----------------------------------------------GCCTCTCGCGGAGAACCCCGGCCTCTCCTC--GGGATCACGAGAACGATGTGCGAACA-CGGCGCTTCTCCCTCGTTCGGAGGGAGGGACACTTCCGGACGTGCTCGGCAAATCCAAGTGTTCTGACCTCGcgacatttcgacgagttaagt-ctaagtgaatcagacacatgtggattcaatttGCTTCTTCACCCTCGGCGTTGAAGGGCTTTG------------------------
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=12360.000000
s hg38.chrX_KI270880v1_alt     227335 46 +    284869 aaaaGCCCTTTTCTTTcttccttccttccttcccttcc--tcccttcc
s panTro5.chrX                 410719 45 + 155549662 aaaaGCCCTTTTCTTTCtcccttcc---cttcccttcccttcccttcc
i panTro5.chrX                 C 0 I 65
s gorGor5.CYUI01015925v1       302070 29 +    417917 AAAAGCCcttttattccttccttcc---------ttcc----------
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       375395 44 +   1230721 AAAAGCccttct-ttccttccttccttccttcc-ttcc--ttccttcc
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 354503 47 + 123869142 GCAGGTCcttccttcctttctttctttctttctcttttctttctttc-
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=1299.000000
s hg38.chrX_KI270880v1_alt     227381 3 +    284869 ttc
s gorGor5.CYUI01015925v1       302099 3 +    417917 ttc
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       375439 3 +   1230721 ttc
i colAng1.NW_012115411v1       C 0 I 7341
s canFam3.chrX                 354550 3 + 123869142 ttt
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e panTro5.chrX                 410764 65 + 155549662 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e rheMac8.chrX                 146275 9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=8918.000000
s hg38.chrX_KI270880v1_alt     227384 79 +    284869 ----atttctttccttccttcctccttccttccttccgtccttccGtctttctttctttc--tttctttctttctttctttcttt
s gorGor5.CYUI01015925v1       302102 48 +    417917 ----atttctttccttccttcct---tccttccttcc------------------------------ttctttctttctttcttt
i gorGor5.CYUI01015925v1       C 0 C 0
s canFam3.chrX                 354553 82 + 123869142 ctttctttctttctttctttctt---tctttctttctttctttctttctttctttctttctttttctttctttctttctttcttt
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e panTro5.chrX                 410764 65 + 155549662 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=26353.000000
s hg38.chrX_KI270880v1_alt     227463 82 +    284869 ctttctttctttctttctttctttctttctgtctttctttctttctgtctttctttctttcttctttttctttctttcGttc
s panTro5.chrX                 410829 51 + 155549662 cttcccttccttctttctttctttctttct-------------------------------ttccttctctttctttcAttc
i panTro5.chrX                 I 65 C 0
s gorGor5.CYUI01015925v1       302150 82 +    417917 ctttctttctttctttctttctttctttctttctttctctctctctctctttctttctttcttctttttctttctttcgttc
i gorGor5.CYUI01015925v1       C 0 C 0
s canFam3.chrX                 354635 80 + 123869142 ctttctttctttctttctttctttctttct-tctttctttctttctttctttctttctttctttctt-tctttctttctttc
i canFam3.chrX                 C 0 I 863
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=611.000000
s hg38.chrX_KI270880v1_alt     227545 3 +    284869 gaa
s panTro5.chrX                 410880 3 + 155549662 gag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302232 3 +    417917 gag
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275 9 + 149150640 I
e macNem1.NW_012017243v1       395723 2206 +  25972781 I
e macFas5.chrUn_KE146137        14343 0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=55740.000000
s hg38.chrX_KI270880v1_alt     227548 124 +    284869 acggagtctcactctgtcgcccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcctgggttcaagcgactctcttgcctcagcctcccgagtagctgggatgacaggt
s panTro5.chrX                 410883 124 + 155549662 acagagtctcactctgtggcccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302235 123 +    417917 atggagtctcactctgtcgcccaggctagagtgcagtggtgtgatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcct-ccgagtagctgggatgacaggt
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       397929 121 +  25972781 acggagtctcgctctgtcg-ccaggctggagtgcag-ggtgcg-tctcggctcagtgcaacctcccctcccgcgggttcagcgattctcctgcctcagcctcccaagtagctgggattacaggc
i macNem1.NW_012017243v1       I 2206 I 27
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275   9 + 149150640 I
e macFas5.chrUn_KE146137        14343   0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=7006.000000
s hg38.chrX_KI270880v1_alt     227672 26 +    284869 gcccgccaccacatctggctaatttg
s panTro5.chrX                 411007 26 + 155549662 gcccgccaccatgtctggctaatttg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302358 26 +    417917 gcccgccaccacgtctggctaatttg
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macNem1.NW_012017243v1       398050 27 +  25972781 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=9453.000000
s hg38.chrX_KI270880v1_alt     227698 28 +    284869 tgtatatttagtagagacgaggtttcag-
s panTro5.chrX                 411033 28 + 155549662 tgtatatttagtagagacgaggtttcag-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302384 28 +    417917 tgtatttttagtagagatggggtttcag-
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       398077 28 +  25972781 tgtatttttagta-agacggggttctcac
i macNem1.NW_012017243v1       I 27 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e macFas5.chrUn_KE146137        14343  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=73303.000000
s hg38.chrX_KI270880v1_alt     227726 93 +    284869 catgttggtcag-gctggtctcgaactcctgacctcaggggat-ccgcccacctcggcctcccaaagtgctgggatta-caggtgtgagccg-ccat
s panTro5.chrX                 411061 93 + 155549662 catgttggtcag-gctggtctcgaactcctgacctcaggggat-ccgcccacctcggcctcccaaagtgctgggatca-caggcgtgagaca-ccgt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302412 93 +    417917 catgttggtcag-gctggtctcgaactcctgacctcaggggat-ccgcccacctcggcctcccaaagtgctgggatca-caggcgtgagcca-ccgt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        14343 93 -     20017 catgttggccag-gctggtctcgaactcctgacctcaggtgat-ccacccgcctcagcctcccgaagtgctgggatga-caggcgtgagcca-ccgc
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       398105 97 +  25972781 catgttggccagcgctggtctcgaactcctgacctcaggtgatcccacccgcctcagcctcccgaagtgctgggatgaccaggcgtgagccacccgc
i macNem1.NW_012017243v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146275  9 + 149150640 I
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=122686.000000
s hg38.chrX_KI270880v1_alt     227819 109 +    284869 gcccggccCCTCATACCTCACCCCAATCATTTGAGAAACAGACAGAGATGTTTTGATATGCACCAGAGGCTGGAGCAGGTGACTGGGGCAAGTCCAACAGGTACTTCCC
s panTro5.chrX                 411154 109 + 155549662 gcctggccCCTCATACCTCACCCCAATCATTTGAGAAACAGATGGAGATGTTTTGATATGAACCAGAGGCTGGAGCAGGTGATTGGGGCAAGTCCAACAGGTACTTCCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302505 109 +    417917 gcccggccCCTCATACCTCACCCCAATCATTTGAGAAACAGATGGAGATGCTTTGATATGCACCAGAGGCTGGAGCAGGTGATTGGGGCAAGTCCAACAGGTACTTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146284 109 + 149150640 gcccggccCCTCATCCCTAACCCCAATCATGTGAGAAACGGTTGGAGATGTTTTGAAATACACCAGAGGCTGGATCCGGTGATCGGGGCAAGTCGAACCGATACTTCCC
i rheMac8.chrX                 I 9 C 0
s macFas5.chrUn_KE146137        14436 109 -     20017 gcccggccCCTCATCCCTAACCCCAATCATGTGAGAAACGGTTGGAGATGTTTTGAAATACACCAGAGGCTGGATCCGGTGATCGGGGCAAGTCGAACCGATACTTCCC
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       398202 106 +  25972781 gcccgCGCCCTCATCCCTAACCC--ATCATGTGAGAAACGGTTGGAGATGTTTTG-AATACACCAGAGGCTGGATCCGGTGATCGGGGCAAGTCGAACCGATACTTCCC
i macNem1.NW_012017243v1       C 0 I 387
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=35206.000000
s hg38.chrX_KI270880v1_alt     227928 54 +    284869 CATTGACCACGGGGGAAGAGAGAACCTTGTTTCTTAAGTGTGATGAGGAGGttt
s panTro5.chrX                 411263 50 + 155549662 CATTGACCACGGGGGAAGAGAGAACCTTGTT----AAGTGTGATGAGGAGGttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302614 54 +    417917 CATTGACCACGGGGGAAGAGAGAACCTTGTTTCTTAAGTGTGATGAGGAGGTGt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146393 52 + 149150640 CGTTGACCACTGAGGA--GGAGAATCTTGTTTCTTAACTGTTGTGAGGAGGTTT
i rheMac8.chrX                 C 0 I 339
s macFas5.chrUn_KE146137        14545 52 -     20017 CGTTGACCACTGAGGA--GGAGAATCTTGTTTCTTAACTGTTGTGAGGAGGTTT
i macFas5.chrUn_KE146137       C 0 I 344
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e macNem1.NW_012017243v1       398308 387 +  25972781 I
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=2728.000000
s hg38.chrX_KI270880v1_alt     227982 22 +    284869 tttgttttgttttgttttgttt
s panTro5.chrX                 411313 22 + 155549662 tttgttttgttttgttttgttt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       302668 18 +    417917 ttt-ttttg-tttgttttgt--
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146445 339 + 149150640 I
e macNem1.NW_012017243v1       398308 387 +  25972781 I
e macFas5.chrUn_KE146137        14597 344 -     20017 I
e panPan2.chrUn_NW_014024190v1 138861 1047 -    177848 I

a score=146051.000000
s hg38.chrX_KI270880v1_alt     228004 295 +    284869 ttttgagatggggtctcgctctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaaattccgcctcctggattcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcctaccagcacgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcttgatccacctgcgtcggccttccaaGTATTGATGAGGTTTTTAATGAGATTTG-TGTGAAGGGTTCC--TTGGAG
s panTro5.chrX                 411335 295 + 155549662 ttttgagatggggtctcgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaaattccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcttgatccgcccgcgtcggccttccaaGTATTGAGGAGGTTTTTAATGAGATTTG-TGTGAAGGGTTCC--TTGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 139908 295 -    177848 ttttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaaattccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcttgatccgcccgcgtcggccttccaaGTATTGAGGAGGTTTTTAATGAGATTTG-TGTGAAGGGTTCC--TTGGAG
i panPan2.chrUn_NW_014024190v1 I 1047 C 0
s gorGor5.CYUI01015925v1       302686 293 +    417917 ttttgagatggggtctcgctctgtcgcccaggctggagtgcagtggagcgatctcagctcactgcaaattccgccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggagtacaggcacctgccaccacgcccggctaa-ttttttgtatttttagtagaga--gggtttcaccgtgttagccaggctggtct-gaactcctgacctcgtgatcctcctgcctggtcttccaaagtactgagGA-GTTTTTAATGAGATTTGTTGGTAAGGGTTCCTTTTGGAG
i gorGor5.CYUI01015925v1       C 0 I 17
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146445 339 + 149150640 I
e macNem1.NW_012017243v1       398308 387 +  25972781 I
e macFas5.chrUn_KE146137        14597 344 -     20017 I

a score=2592.000000
s hg38.chrX_KI270880v1_alt     228299 9 +    284869 ACACTCGGT
s panTro5.chrX                 411630 9 + 155549662 ACACTCGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140203 9 -    177848 ACACTCGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       228816 2402 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       262583 4214 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146445 339 + 149150640 I
e macNem1.NW_012017243v1       398308 387 +  25972781 I
e macFas5.chrUn_KE146137        14597 344 -     20017 I
e gorGor5.CYUI01015925v1       302979 17 +    417917 I

a score=2548.000000
s hg38.chrX_KI270880v1_alt     228308 1 +    284869 A
s panTro5.chrX                 411639 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140212 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chrX                 146784 1 + 149150640 a
i rheMac8.chrX                 I 339 C 0
s macFas5.chrUn_KE146137        14941 1 -     20017 a
i macFas5.chrUn_KE146137       I 344 C 0
s macNem1.NW_012017243v1       398695 1 +  25972781 a
i macNem1.NW_012017243v1       I 387 C 0
s cerAty1.NW_012001098v1       266797 1 -   1025902 a
i cerAty1.NW_012001098v1       I 4214 C 0
s manLeu1.NW_012108508v1       231218 1 -    350446 a
i manLeu1.NW_012108508v1       I 2402 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e gorGor5.CYUI01015925v1       302979 17 +    417917 I

a score=261043.000000
s hg38.chrX_KI270880v1_alt     228309 101 +    284869 AAGAAAACGACAAATAGTAACAGGTTGCAAAGGAGGTCTCTGCG--TAACCTGGGGAGCTGC-TGTCCAGGGGTACCTCGA--AAGCATGAGGAGCTGC-AGACAGT
s panTro5.chrX                 411640 101 + 155549662 AAGAAAACAACAAATAGTAACAGGTTGCAAAGGAGGTCTCTGCG--TAACCTGGGGAGCTGC-TGTCCAGGGGTACCTCGA--AAGCATGAGGAGCTGC-AGACAGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140213 101 -    177848 AAGAAAACGACAAATAGTAACAGGTTGCAAAGGAGGTGTCTGCG--TAACCTGGGGAGCTGC-TGTCCAGGGGTACCTCGA--AAGCATGAGGAGCTGC-AGACAGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       302996 100 +    417917 AAGAAAACGACAAATAGTAACAGGTTGCAAAGGAGGTCTCTGCG--TAACCTGGGGAGCTGC-TGTCAGGTGGTACCTC-A--AAACATGAGGAGCTGC-AGACAGT
i gorGor5.CYUI01015925v1       I 17 I 56
s rheMac8.chrX                 146785 103 + 149150640 aagaaaaCGACGAATAGTAACAGGTTGCAAACGAGGTCTGTGCGTTTAACCCGGGGAGCTGC-CGTCCAGGGAGAGCTGGA--ATGCGTGAGGAGCTGC-AGACAGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        14942 104 -     20017 aagaaaACGACGAATAGTAACAGGTTGCAAACGAGGTCTGTGCGTTTAACCCGGGGAGCTGC-CGTCCAGGGGGAGCTGGA--ATGCGTGTGGAGCTGCAGGACAGT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       398696 104 +  25972781 aagaaaaCGACGAATAGTAACAGGTTGCAAACGAGGTTTGTGCGTTTAACCCGGGGAGCTGC-CGTCCAGGGGGAGCTGGAATATGCGTGAGGAGCTG--AGACACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       266798 104 -   1025902 aaGGAAACGACGAAGAGTAACAGGTTGCAAACGAGGTCTGTGCGTTTAACCCTGGGAGCTGCGTGTCCAGGGGGAGCTGGA--ATGCGTGAGGAGCTGC-AGATAGT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       231219 103 -    350446 aagaaaaCGACGAAGAGTAACAGGTTGCAAACGAGGTCTGTGCGTTTAACCCGGGGAGCTGC-CGTGCAGGGGGAGCTGGA--ATGGGTGAGGAGCTGC-AGACAGT
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I

a score=77973.000000
s hg38.chrX_KI270880v1_alt     228410 35 +    284869 CCGTAGTTTCCAGCTGACCTGGGCGTGGGCATCTG
s panTro5.chrX                 411741 35 + 155549662 CCGTAGTTTCCAGCTGACCTGGGCGTGGGTGTCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140314 35 -    177848 CCGTAGTTTCCAGCTGACCTGGGCGTGGGTGTCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s rheMac8.chrX                 146888 35 + 149150640 CTGTAGCTTTCAGTTGACCTGGGCGTGGGCGTCTG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        15046 35 -     20017 CTGTAGCTTTCAGTTGACCTGGGCGTGGGCGTCTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       398800 34 +  25972781 CTGTAGC-TTCAGTTGACCTGGGCGTGGGCGTCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       266902 35 -   1025902 CTGTAGCTTTCAGTTGACCTGGGCCTGGGCGTCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       231322 35 -    350446 CTGTAGTTTCCAGTTGACCTGGGCCTGGGCGTCTG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e gorGor5.CYUI01015925v1       303096 56 +    417917 I

a score=67331.000000
s hg38.chrX_KI270880v1_alt     228445 26 +    284869 TGATCTGTGTGTGGCAGGGTGTAAGC
s panTro5.chrX                 411776 26 + 155549662 TGATCTGTGTTTGGCAGGGTGTAAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140349 26 -    177848 TGATCTGTGTTTGGCAGGGTGTAAGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303152 26 +    417917 TGATCTCTGTGTGGCAGGGTGTAAGC
i gorGor5.CYUI01015925v1       I 56 C 0
s rheMac8.chrX                 146923 26 + 149150640 TGATCTGTCTTTGGCCGGGTGTAAGC
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        15081 26 -     20017 TGATCTGTCTTTGGCCGGGTGTAAGC
i macFas5.chrUn_KE146137       C 0 I 788
s macNem1.NW_012017243v1       398834 25 +  25972781 TGATCTGTCTTTGGCC-GGTGTAAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       266937 26 -   1025902 TGATCTGTCTTTGGCAGACTGTAAGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       231357 26 -    350446 TGATCTGTCTTTGGCAGACTGTAAGC
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I

a score=11998.000000
s hg38.chrX_KI270880v1_alt     228471 5 +    284869 AGGCT
s panTro5.chrX                 411802 5 + 155549662 AGGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140375 5 -    177848 AGGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303178 5 +    417917 AGGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146949 5 + 149150640 TGGCT
i rheMac8.chrX                 C 0 C 0
s macNem1.NW_012017243v1       398859 5 +  25972781 AGGCT
i macNem1.NW_012017243v1       C 0 I 1432
s cerAty1.NW_012001098v1       266963 5 -   1025902 AGGCT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       231383 5 -    350446 AGGCT
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e macFas5.chrUn_KE146137        15107 788 -     20017 I

a score=12174.000000
s hg38.chrX_KI270880v1_alt     228476 8 +    284869 TTGATGCC
s panTro5.chrX                 411807 8 + 155549662 TTGATGCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140380 8 -    177848 TTGATGCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303183 8 +    417917 TTGATGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 146954 8 + 149150640 CGGATGCC
i rheMac8.chrX                 C 0 I 774
s cerAty1.NW_012001098v1       266968 8 -   1025902 CGGATGCC
i cerAty1.NW_012001098v1       C 0 I 410
s manLeu1.NW_012108508v1       231388 8 -    350446 CGGATGCC
i manLeu1.NW_012108508v1       C 0 I 2735
e canFam3.chrX                 354715 863 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e macNem1.NW_012017243v1       398864 1432 +  25972781 I
e macFas5.chrUn_KE146137        15107 788 -     20017 I

a score=546.000000
s hg38.chrX_KI270880v1_alt     228484 1 +    284869 T
s panTro5.chrX                 411815 1 + 155549662 T
i panTro5.chrX                 C 0 I 415
s panPan2.chrUn_NW_014024190v1 140388 1 -    177848 T
i panPan2.chrUn_NW_014024190v1 C 0 I 414
s gorGor5.CYUI01015925v1       303191 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 I 437
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       266976 410 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146962 774 + 149150640 I
e macNem1.NW_012017243v1       398864 1432 +  25972781 I
e macFas5.chrUn_KE146137        15107 788 -     20017 I

a score=1692.000000
s hg38.chrX_KI270880v1_alt     228485 3 +    284869 AGA
s panTro5.chrX                 412231 3 + 155549662 AGA
i panTro5.chrX                 I 415 C 0
s panPan2.chrUn_NW_014024190v1 140803 3 -    177848 AGA
i panPan2.chrUn_NW_014024190v1 I 414 C 0
s gorGor5.CYUI01015925v1       303629 3 +    417917 AGA
i gorGor5.CYUI01015925v1       I 437 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       266976 410 -   1025902 I
e colAng1.NW_012115411v1       375442 7341 +   1230721 I
e rheMac8.chrX                 146962 774 + 149150640 I
e macNem1.NW_012017243v1       398864 1432 +  25972781 I
e macFas5.chrUn_KE146137        15107 788 -     20017 I

a score=28091.000000
s hg38.chrX_KI270880v1_alt     228488 13 +    284869 CACCTTTTCTTTA
s panTro5.chrX                 412234 13 + 155549662 CACCTTTTCTTTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140806 13 -    177848 CACCTTTTCTTTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303632 13 +    417917 CACCTTTTCTTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147736 13 + 149150640 CACCCTTTTTTTC
i rheMac8.chrX                 I 774 C 0
s macFas5.chrUn_KE146137        15895 13 -     20017 CACCCTTTCTTTC
i macFas5.chrUn_KE146137       I 788 C 0
s macNem1.NW_012017243v1       400296 13 +  25972781 CACCCTTTCTTTC
i macNem1.NW_012017243v1       I 1432 C 0
s cerAty1.NW_012001098v1       267386 13 -   1025902 CACCCTTTCTTTC
i cerAty1.NW_012001098v1       I 410 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e colAng1.NW_012115411v1       375442 7341 +   1230721 I

a score=99642.000000
s hg38.chrX_KI270880v1_alt     228501 34 +    284869 TTTAGCAGCTGTAACATCCAATGAAC-TCTGAAC-T
s panTro5.chrX                 412247 34 + 155549662 TTTAGCAGCTGTAACATCCAATGAAC-TCTGAAC-T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140819 34 -    177848 TTTAGCAGCTGTAACATCCAATGAAC-TCTGAAC-T
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303645 36 +    417917 TTTAGCAGCTGTAACATCCAATGAACTTCTGAACTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147749 34 + 149150640 TTTAGCAGCCGTGACATCCGATGAAC-TCTGAAC-T
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        15908 34 -     20017 TTTAGCAGCCGTGACATCCGATGAAC-TCTGAAC-T
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400309 34 +  25972781 TTTAGCAGCCGTGACATCCGATGAAC-TCTGAAC-T
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       267399 34 -   1025902 TTTAGCAGCCGTGACATCCGATGAAC-TCTGAAC-T
i cerAty1.NW_012001098v1       C 0 I 7
s colAng1.NW_012115411v1       382783 34 +   1230721 TTTAGCAGCCATGACATCCGATGGAC-TCTGAAC-T
i colAng1.NW_012115411v1       I 7341 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T

a score=25058.000000
s hg38.chrX_KI270880v1_alt     228535 13 +    284869 GTTTATGGGCCTC
s panTro5.chrX                 412281 13 + 155549662 GTTTATGGGCCTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140853 13 -    177848 GTTTATGGGCCTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303681 13 +    417917 GTTTATGGGCCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147783 13 + 149150640 TTTTGTCGGCCTC
i rheMac8.chrX                 C 0 I 4
s macFas5.chrUn_KE146137        15942 13 -     20017 TTTTGTCGGCCTC
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400343 13 +  25972781 TTTTGTCGGCCTC
i macNem1.NW_012017243v1       C 0 I 4
s colAng1.NW_012115411v1       382817 13 +   1230721 TTTCGTCGGCCTC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       267433  7 -   1025902 I

a score=16363.000000
s hg38.chrX_KI270880v1_alt     228548 34 +    284869 CTGCTCCCCAAAGGGTACACACCCTGCTTCTGCT
s panTro5.chrX                 412294 32 + 155549662 CTGCTCCCCAAAGGGTACAC--CCTGCTTCTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140866 32 -    177848 CTGCTCCCCAAAGGGTACAC--CCTGCTTCTGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303694 32 +    417917 CTGCTCCCCAAAGGGTACAC--CCTGCTTCTGCT
i gorGor5.CYUI01015925v1       C 0 I 1
s macFas5.chrUn_KE146137        15955  4 -     20017 -----------------------------ATGC-
i macFas5.chrUn_KE146137       C 0 C 0
s colAng1.NW_012115411v1       382830 30 +   1230721 CAGCTCCCCCAAGGGAAC----CCTGCTCCTGCC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e cerAty1.NW_012001098v1       267433  7 -   1025902 I
e rheMac8.chrX                 147796  4 + 149150640 I
e macNem1.NW_012017243v1       400356  4 +  25972781 I

a score=9485.000000
s hg38.chrX_KI270880v1_alt     228582 7 +    284869 GGCTTCA
s panTro5.chrX                 412326 7 + 155549662 GGCTTCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140898 7 -    177848 GGCTTCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303727 7 +    417917 GGCTTCA
i gorGor5.CYUI01015925v1       I 1 C 0
s cerAty1.NW_012001098v1       267440 7 -   1025902 GGCCTCA
i cerAty1.NW_012001098v1       I 7 C 0
s colAng1.NW_012115411v1       382860 7 +   1230721 GGCTTCA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e chlSab2.chrUn_KE147541v1     208113 7672 -    811265 T
e rheMac8.chrX                 147796 4 + 149150640 I
e macNem1.NW_012017243v1       400356 4 +  25972781 I
e macFas5.chrUn_KE146137        15959 0 -     20017 C

a score=32227.000000
s hg38.chrX_KI270880v1_alt     228589 26 +    284869 TGCCTCAGAACTGTGGTGTCGTTGG-T
s panTro5.chrX                 412333 26 + 155549662 TGCCTCAGAACCTTGGTGTCGTTGG-C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140905 26 -    177848 TGCCTCAGAACCTTGGTGTCGTTGG-C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303734 26 +    417917 TG-CTCAGAACTTTGCTGTCGTTGGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       267447 26 -   1025902 TGCCTCAGAACCTGGGTATCGTTGG-T
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     200441 26 -    811265 TGCCTCAGAACGTGGGTGTCGTTGG-T
i chlSab2.chrUn_KE147541v1     T 7672 C 0
s colAng1.NW_012115411v1       382867 26 +   1230721 CGCCTCAGAACGTGCGTGTCGTGGG-A
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I
e rheMac8.chrX                 147796  4 + 149150640 I
e macNem1.NW_012017243v1       400356  4 +  25972781 I
e macFas5.chrUn_KE146137        15959  0 -     20017 C

a score=405979.000000
s hg38.chrX_KI270880v1_alt     228615 123 +    284869 CTCAG---ACACCACTTTGCCATCCACTATCCGGAGGGTGGGG-GTCTTTTGGATAGTTTGCGTGGAGTTGCTGCTGTCCAGGGCATCACC----AAGACTCTAACAGAGAAGACCAAGCCCCAGTTAGCG
s panTro5.chrX                 412359 123 + 155549662 CTCAG---ACACCACTTTGCCATCCACTATCCGGAGGGTGGGT-GTCTTTTGGATAGTTTGCGTGGAGTTGCTGCTGTCCAGGGCATCACC----AAGACTCTAACAGAGAAGACCAAGCCCCAGTGAGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 140931 123 -    177848 CTCAG---ACACCACTTTGCCATCCACTATCCGGAGGGTGGGT-GTCTTTTGGATAGTTTGCGTGGAGTTGCTGCTGTCCAGGGCATCACC----AAGACTCTAACAGAGAAGACCAAGCCCCAGTGAGCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303760 131 +    417917 CTCAGTGCACACCACTTTGCCATCCACTTTTCGGCAGGTGGGGAGTCTTTTGGATAGTTTGCGTGGAGTTGCTGCTGTCCATGGCATCACCCAAGACGACTCTAACAGAGAAGACCAAGCCCCAGTTAGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147800 123 + 149150640 CTCAG---ACACCACTTGGCCATCCCCTAGCCGGCGGGCGTTG-GTCTTTTGGATGATTTGCCTGGAGCTGCTGCTGTCCAGGACATCACC----AAGACTGGCACGGAGAAGACCAAGGCCCAGTTAGTG
i rheMac8.chrX                 I 4 C 0
s macFas5.chrUn_KE146137        15959 123 -     20017 CTCAG---ACACCACTTGGCCATCCCCTAGCCGGCGGGCGTTG-GTCTTTTGGATGATTTGCCTGGAGCTGCTGCTGTCCAGGACATCACC----AAGACTGGCACGGAGAAGACCAAGGCCCAGTTAGTG
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400360 123 +  25972781 CTCAG---ACACCACTTGGCCATCCCCTAGCCGGCGGGCGTTG-GTCTTTTGGATGATTTGCCTGGAGCTGCTGCTGTCCAGGACATCACC----AAGACTGGCACGGAGAAGACCAAGGCCCAGTTAGTG
i macNem1.NW_012017243v1       I 4 C 0
s cerAty1.NW_012001098v1       267473 123 -   1025902 CTCAG---ACGCCACTTGGCCATCCCCTAGCCGGCGGGCGGTG-GTCTTTTGGATGGCTTGCCTGGAGCTGCTGCTGTCCAGGACATCACC----GAGACTGGCACGGAGAAGACCAAGGCCCAGTTAGTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     200467 123 -    811265 CTGAG---ACGCCACTTGGCCATCCCCTAGCCGGCGGGCGGTG-GTCTTTTGGATGGTTTCCCTGGAGCTGCTGCTGTCCAGGACATCACC----GAGACTGGCACGGAGAAGACCAAGGCCCCGTTAGTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       382893 123 +   1230721 CTCAG---ATGCCACTTGGCCCTCCACGAGCCGGCGGGCGGTG-GCCTTCCGGATGGTTTGCCTGGAGCTGCTGCTGCCCAGGACATCACC----GAGACTGGCACGGAGAAGACCAAGGCCCAGTGAGTG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             302175 791 +  11138919 I

a score=53945.000000
s hg38.chrX_KI270880v1_alt     228738 12 +    284869 TTTGCAGGCATT
s panTro5.chrX                 412482 12 + 155549662 TTTGCAGGCATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141054 12 -    177848 TTTGCAGGCATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303891 12 +    417917 TTTGCAGGCATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147923 12 + 149150640 TTTGCAGGCATT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16082 12 -     20017 TTTGCAGGCATT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400483 12 +  25972781 TTTGCAGGCATT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       267596 12 -   1025902 TTTGCAGGCATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     200590 12 -    811265 TTGGCAGGCGTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383016 12 +   1230721 TTTGCAGGCATT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             302966 12 +  11138919 TCTGCAGGCAGG
i otoGar3.GL873584             I 791 C 0
e canFam3.chrX                 354715 863 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=1520571.000000
s hg38.chrX_KI270880v1_alt     228750 387 +    284869 CGGGGGAGAG----GGTGGGGAGAGCGCAGGTCGCTGCCTGTCCC-TAGAACCTCAC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCACGT-GGAGGGT----------GGCGGGGATCAACTCTCTCAGGGCCTCTAATCACACGTGGCACTTGCTGTCAGCAAGACGGCTTTGGAGCGGGGACGTGGATCATTAGGGATGAACCTGCAGATCATGACAACAAATGGGGTCTTAATCTCCCAAGAAAGGGGATGTCGCCGGCTGGCTTGGGAGGC-AGGGGT-CCCCGAGCGCGACGGT-GCTGGCTGGCCCG---------CCTGCATCCCATTTGCAGAG---CAAGCTTCTGCGTTCAGGG-CC--TGGCCGGGCCATGGAAATGGCTGGGCTGTGAGCATCGTGAATTCCTGGAC
s panTro5.chrX                 412494 385 + 155549662 GCGGGGAGAG----GGTGGGGAGAGCGCAGGTCGCTGCCTGTCCC-TAGAACCTCAC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCACGT-GGAGGGT----------GGCGGGGATCAACTCTCTCAGGGCCTCTAATCACATGTGGCACTTGCTGTCAGCAAGACGGCTTTGGAGCGGGGACGTGGATCATTAGGGATGAAGCTGCAAATCATGACAACAAATAGGGTCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCTTGGGAGGC-AGGGGT-CCCCGAGCG--GCGGC-GCTGGCTGGCCCG---------CCTGCATCCCATTTGCAGAG---CAAGCTTCTGCGTTCAGGG-CC--TGGCCGGGCCATGGAAGCGGCTGGGCTGTGAGCATCGTGAATTCCTGGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141066 385 -    177848 GAGGGGAGAG----GGTGGGGAGAGCGCAGGTCGCTGCCTGTCCC-TAGAACCTCAC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCACGT-GGAGGGT----------GGCGGGGATCAACTCTCTCAGGGCCTCTAATCACACGTGGCACTTGCTGTCAGCAAGACGGCTTTGGAGCGGGGACGTGGATCATTAGGGATGAAGCTGCAAATCATGACAACAAATAGGGTCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCTTGGGAGGC-AGGGGT-CCCCGAGCG--GCGGC-GCTGGCTGGCCCG---------CCTGCATCTCATTTGCAGAG---CAAGCTTCTGCGTTCAGGG-CC--TGGCCGGGCCATGGAAGCGGCTGGGCTGTGAGCATCGTGAATTCCTGGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       303903 372 +    417917 GCGGGGAGAG----GGT-GGGAGAGCGCAGGTCGCCGCCTGTCCCTTAGAACCTCAC-TGTCTGTCTGAGAAGTTGTATTTAGATTTGGCAGGCACGTGGGAGGGT----------G--GGGGATCAACTCTCTCAGGGCCTCTAATCACACGTGGCACTTGCTGTCAGCAAGACGGCTTTGGAGTGGGGACGTGGATCATTAGGGATGAAGCTGCAAATCATGACAACAAATAGGGTCTTAATCTCCCAAGAAA-GGGATGTCACCGGCTGGCTTGGGAGGC-AGGGGTCCCCCGAGCG--GCGGT-GCTGGCTGGCCCC---------CCTGCATCCCATTTGCAGAG---CAAGCTTCTGCTTTCAGGG-CC--TGGCC-----------------GGGCTGTGAGCATCGTGAATTCCTGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 147935 404 + 149150640 GCAGGGAGAA-----GGGGGGAGATTGCGGGTTGCTCCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCATGT-GGACGGTGCGGGGGGAGGGGGGGAGTCAACCCTCTCAGGGCCTCTAATCACACGTGACACTGGCTGTCAGGAACACAGCTTTGCAGCGGGGCCGCGGATCATTAGGGATGAAACTGCAAATCACCACAACAAATAGGGGCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGCG--GCGGC-GCTGGCTGGCCCGGCTGCATCCCCTGCATCCCATTTGCAGAG---CAGGCTCTTGCGTGCAGGGCCC--AGGCTGGGCCACAGAAGCGGCTGGGCTACGGGCATCGCGAATTCCTGGAT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16094 404 -     20017 GCAGGGAGAA-----GGGGGGAGATTGCGGGTTGCTCCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCATGT-GGACGGTGCGGGGGGAGGGGGGGAGTCAACCCTCTCAGGGCCTCTAATCACACGTGACACTGGCTGTCAGGAACACAGCTTTGCAGCGGGGCCGCGGATCATTAGGGATGAAACTGCAAATCACCACAACAAATAGGGGCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGCG--GCGGC-GCTGGCTGGCCCGGCTGCATCCCCTGCATCCCATTTGCAGAG---CAGGCTCTTGCGTGCAGGGCCC--AGGCTGGGCCACAGAAGCGGCTGGGCTACGGGCATCGCGAATTCCTGGAT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400495 404 +  25972781 GCAGGGAGAA-----GGGGGGAGATTGCGGGTTGCTCCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCATGT-GGACGGTGCGGGGGGAGGGGGGGAGTCAACCCTCTCAGGGCCGCTAATCACACGTGACACTGGCTGTCAGGAACACAGCTTTGCAGCGGGGCCGCGGATCATTAGGGATGAAACTGCAAATCACCACAACAAATAGGGGCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGCG--GCGGC-GCTGGCTGGCCCGGCTGCATCCCCTGCATCCCATTTGCAGAG---CAGGCTCCTGCGTGCAGGGCCC--AGGCTGGGCCACAGAAGCGGATGGGCTACGGGCATCGCGAATTCCTGGAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       267608 402 -   1025902 GCAGGGAGAA-----GGGGGGAGATTGAGGGTTGCTCCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCAGGCATGT-GGACGGTGCGGGGAGC-GGGGGCAGTCAACCCTCTCAGGGCCTCTAATCACACGTGACACTGGCTGTCAGGAACACAGCTTTGCAGCGGGGCCGCGGATCATTAGGGATGAAACTGCAAATCACCACAACAAATAGGGGCTTAATCTCCCAAGAAGGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGCG--GCGGC-GCTGGCTGGCCCGGCTGCATCCCCTGCATCCCATTTACAGAG---CAGGCTCCTGTGTGCAGGG-CC--AGGCTGGGCCACAGATAGGGCTGGGCTACGGGCATCGCGAATTCCTGGAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     200602 351 -    811265 GCAGGGAGAA----GGGGGGGAGATTGTGGGTTGCTCCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGATT--GCTGGCATGT-GGACGGTGCGGCGG---GGGAGAGATCAACCCTCTCAGGGCCTCTAATCACACGTGACACTGGCTGTCAGGAACACGGCTTTGCAGCGCGGCCGCGGATCATTAGGGATGAAACTGCAAATCACCACAACAAATAGGGGCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGC--------------------------------------------------------GGCTCCTGCGTGCAGGG-CC--AGGCTGGGCCACAGATAGGGCTGGGCTACGGGCATCGCGAATTCCTGGAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383028 391 +   1230721 GCAGGCAGAGCGGAGGGGGGGGGACTGCGGGTGGCTGCCTGTCCC-TGGAACCTCGC-TGTCTGTCTGAGAAGTGA---TTAGACT--GCAGGCCTGT-GGACCGTGC--------GGGGCGGATCAACCCTCTCAGGGCCTCTAATCACACGTGACACTGGCTGTCAGGAAGACGGCTTTGCAGCGCGGCCGCGGATCATTAGGGATGAAGCTGCAAATCATCACAACAAATAGGGGCTTAATCTCCCAAGAAAGGGGATGTCACCGGCTGGCCTGGGAGGC-CGGGGT-CCCTGAGCG--GCGGCTGCTGGCTGGCCCCCCTGCATCCCCTGCATCCCATTTGCAGAG---CAGGCTCCTGCGTGCAGGG-CC--AGGCTGGGCCACAGAAACG----------GGCCGTCGTGAATTCCTGGAT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             302978 350 +  11138919 CATGGGAGGG-----GTGGGGGG------------CAGCTGTTGC--AGGACGTGGCGGGTCTGTCTGAGAACTGA---TTAGATG--CCGAGCACGC-CGAGGGT----------GGGGCGAG-CATCTTTCCTGGGGTCCCTAATCACACTTGGCATCCGCTGTCAGGAAGACGGCTTTGGAGCCGAGTGGTGGATCATTACAGATGAAGCAGCAAATGACGCAGACAAATAGGGTCTTAATCTCCCAAGAAAGGGGCCGTCGCCGGCTGGCCTGGGAGGCTCAGGGT-CCCGGAGCG--GCGGT-GCTGGCTGGGCTG---------TCTGCATCCCATTTGCCGTG---CTAGCTCCTGCGTCCAGGA-CC-----------CAGAGAAAAGGCCAGGA----------GTG---TCCTCAAC
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 355578 383 + 123869142 -CGGGGAGAG-----GGGCTGGCGGGGCGGGGGGCCCGCTGTCGG--AGGGCTCTGC-TGTCTGTC-GGGAAGTGA---TTAGATG--CCACGCACGC-CGAGGGT----------GCGGGGAG-CATCCCTCGCGGGGCCCCTAATCATCCTTGGCATCCGCTGTCAGGAAGACGGCTTTGGAGCCGCGCCGGAGCCCATTAGGGATGAAGCAGCCGATGACGGAAACAAATAGGGTCTTAATCTCCCAAGAAAGGGGGCATCGCAGGCCGGCCTGGGAGGC--AGGGT-CCCTGAGCG--GCGGC-ACCAGCGGGGCTG---------TCTGCGTCCCCCCGGAATGGGGCTGGGCTCCCGCCTGCGGGA-CCCACGGCGGGGCCAGGTGTGCG-CTGGGCTGTGGCCGCCGAGGGTGCTCACAT
i canFam3.chrX                 I 863 I 68
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=319349.000000
s hg38.chrX_KI270880v1_alt     229137 85 +    284869 CCTGCTGGAAAAGGAAGCGTCTGACGTGGGCAGTGACCGTGACTCACAGA-GACATGAAAAGTACAAAATGTGACCACTTG-------TTTAT
s panTro5.chrX                 412879 85 + 155549662 CCTGCTGGAAAAGGAAGAGTCTGATGTGGGCAGTGACCGTGACTCACAGA-GACATGAAAAGTACAAAATGTGGCCAGTTG-------TTTAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141451 85 -    177848 CCTGCTGGAAAAGGAAGAGTCTGACGTGGGCAGTGACCGTGACTCACAGA-GACATGAAAAGTACAAAATGTGGCCAGTTG-------TTTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       304275 85 +    417917 CCTGCTGGAAAAGGAAGCGTCTGACGTGGGCAGTGACCGTGACTCACAGA-GACATGAAAAGTACAAAACGTGGCCAGTTG-------TTTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148339 84 + 149150640 CCTGCTGG-ACAGGAAGCGTCCGACGTGGGCAGTGACCGTGACTCACACA-GTCATGAAAAGTGCAAAATGTGGCCACTTG-------TTTAT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16498 84 -     20017 CCTGCTGG-ACAGGAAGCGTCCGACGTGGGCAGTGACCGTGACTCACACA-GTCATGAAAAGTGCAAAATGTGGCCACTTG-------TTTAT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400899 84 +  25972781 CCTGCTGG-ACAGGAAGCGTCCGACGTGGGCAGTGACCGTGACTCACACA-GTCATGAAAAGTGCAAAATGTGGCCACTTG-------TTTAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       268010 84 -   1025902 CCTGCTGT-ACAGGAAGCGTCTGACGTGGGCAGTGACCGTGACTCACACA-GTCATGAAAAGTGCAAAATGTGGCCACTTG-------TTTAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     200953 84 -    811265 CCTGCTGG-AAAGGAAGCGGGCGACGTGGGCAGTGACCGTGACTCACACG-GACATGAAAAGTGCAAAATGTGACCGCTTG-------TTTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383419 84 +   1230721 CCTGCTGG-AAAGGAAGCGTCCGACGTGGGCAGTGACCGTGACTCACACA-GACATGAAAACTGCAAAATGTGGCCACTTG-------TTTAT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             303328 92 +  11138919 TGTGCCGG-AAAGAGAAAGTCCCAAGCAGACAGTGACTGTGCTTAACAGATGCCACCGGGAATGTAAAACAAGACCACTAGCCCCTGTTTCCT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 355961 68 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=467099.000000
s hg38.chrX_KI270880v1_alt     229222 134 +    284869 --------AGCTGTAA-CTAATTTTAGCAGAGGTCTTGGCATCTAGAAAA--------CATACTTTTTTT----TTTTT-----------------------------------------------------------------------------------------TTCCTTCGGTGAAtgtgtagtaaagatataagcttgcccccaaacagatctggattttgcctttgagctctgggag
s panTro5.chrX                 412964 131 + 155549662 --------GGCTGTAA-CTAATTTTAGCAGAGGTCTTGGCATCTAGAAAA--------CATACTTTTTTT----TTTT--------------------------------------------------------------------------------------------CCTTCGGTGAAtgtgtagtaaagatataagcttgcccccaaacagatctggcttttgcctttgagctctgggag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141536 132 -    177848 --------GGCTGTAA-CTAATTTTAGCAGAGGTCTTGGCATCTAGAAAA--------CATACTTTTTTT----TTTT-------------------------------------------------------------------------------------------TCCTTCGGTGAAtgtgtagtaaagatataagcttgcccccaaacagatctggcttttgcctttgagctctgggag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       304360 131 +    417917 --------GGCTCTAA-CTAATTTTAGCAGAGGTCTTGGTATCTAGAAAA--------CATACTTTTTTT----TTTT--------------------------------------------------------------------------------------------TTTTCGGTGAAtgtgtagtaaagatataagcttgcccccaaacagatctggcttttgcctttgagctctgggag
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148423 130 + 149150640 --------GGCAGTAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTA-----TTTC--------------------------------------------------------------------------------------------TTTTGGGTGAAtgtgtagcaaagatggaagcttgtccccaaagaggtctggcctttacctttgagccctgggag
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16582 130 -     20017 --------GGCAGTAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTA-----TTTT--------------------------------------------------------------------------------------------TTTTGGGTGAAtgtgtagcaaagatggaagcttgtccccaaagaggtctggcctttacctttgagccctgggag
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       400983 131 +  25972781 --------GGCAGTAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTAT----TTTT--------------------------------------------------------------------------------------------TTTTGGGTGAAtgtgtagcaaagatggaagcttgtccccaaagaggtctggcctttacctttgagccctgggag
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       268094 131 -   1025902 --------GGCAGTAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTAT----TTTT--------------------------------------------------------------------------------------------TTTTGGGTGAAtatgtagcaaagatggaagcttgtccctaaagaggtctggcctttacctttgagccctgggag
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     201037 130 -    811265 --------GGCAGTAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTT-----TGGG--------------------------------------------------------------------------------------------GGGGGGGTGAAtgtgtagcaaagatggaagcttgtccccaaagaggtctggcctttacctttgagccctgggag
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383503 131 +   1230721 --------GGCAGGAA-CCAATTTTAGCAGCGGTCTTGGTATCTAGAAAA--------AACACTTTTTTT----TTTT--------------------------------------------------------------------------------------------TTTTTGGTGGAtgtgtagcaaagatggaagcttgtccccaaagagctctggcctttacctttgagccctgggag
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             303420 233 +  11138919 --------GGTGCTCA-TCAACTTCAACTAAGGTTTT-GTATCTAGGAAATTTAAGTCAACCTtttttttgcagtttttggccggggctgggtttgaatccgccacttccagcatatggggcagatgccctactcctttgagccacaggcgctgcccATTAAGTCGACCTTTTTTTGTGAATGGTTGACaaagatgtaagcttgccctcaaag-ggtctggactttgcccttgtcttttgggag
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 356029 134 + 123869142 AGCTGTTTGGCACGAGCCCCGCGTTAGCAGGTGTCTTTGTGTCTGGAGAG--------CGAAGGA---------GCGT--------------------------------------------------------------------------------------------TTTTGTGTGAATAAGTAGAAAAGATTGAAG-GTGTCTGCGGAGAGCTCCAGACTTCACCCCTGGCTTCTGGGGG
i canFam3.chrX                 I 68 I 3989
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=193799.000000
s hg38.chrX_KI270880v1_alt     229356 50 +    284869 gtcactctgaaggacttaggatgtcat--gcctgataagaatgtcattattt
s panTro5.chrX                 413095 50 + 155549662 gtcactctgaaggccttaggatgtcat--gcctgataagaatgtcattattt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141668 50 -    177848 gtcactctgaaggccttaggatgtcat--gcctgataagaatgtcattattt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       304491 50 +    417917 gtcactctgaaggccttaggatgtcat--gcctgataagaatgtcattattt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148553 50 + 149150640 gtcacctctaaggcctcaggaagtcat--gcgtgataagaatgtcgttattt
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16712 50 -     20017 gtcacctctaaggcctcaggaagtcat--gcgtgataagaatgtcgttattt
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       401114 50 +  25972781 gtcacctctaaggcctcaggaagtcat--gcgtgataagaatgtcgttattt
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       268225 50 -   1025902 gtcacctctaaggcctcaggaggtcat--gcgtgataagaatgtcattattt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     201167 50 -    811265 gtcacctctaaggcctcaggaggtcat--gcgtgataagaatgtcgttattt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383634 50 +   1230721 gtcacctctaaggcctcaggacgtcat--gcctgataagaatgtcattattt
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             303653 51 +  11138919 gttccctctgggcccttgggatgccttgggcctgctgagagtgtc-ttattt
i otoGar3.GL873584             C 0 I 2357
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=69189.000000
s hg38.chrX_KI270880v1_alt     229406 21 +    284869 Cggccaggtgcagtggctcac
s panTro5.chrX                 413145 21 + 155549662 Cggccaggtgcactggctcac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141718 21 -    177848 Cggccaggtgcactggctcac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       304541 21 +    417917 Cggccaggtgcagtggctcac
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148603 21 + 149150640 gggccgggtgcagtggtgcac
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16762 21 -     20017 gggccgggtgcagtggtgcac
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       401164 21 +  25972781 gggccgggtgcagtggtgcac
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       268275 21 -   1025902 gggccgggtgcagtggctcaa
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     201217 21 -    811265 gggccgggtgcagtggtgcac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       383684 21 +   1230721 gggccgggtgcggtggctcac
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I

a score=739743.000000
s hg38.chrX_KI270880v1_alt     229427 257 +    284869 acctgtaatcgcagcactttgggaggctgaggcgggtggatcgcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaataccaa-attagccgagcatggtggccggtgcccgtaatccaagcgactcgggaggctgaggcaggagaatcgcatgaacccgggaggctgaggttgcagagagccaagatcgtgtcattgcactccagcctgggcaacaagagcaaaactct
s panTro5.chrX                 413166 257 + 155549662 acctgtaatcgcagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaataccaa-attagctgggcatggtggcaggtgcccgtaatccaagcgactcgggaggctgaggcaggagaattgcttaaactcgggaggctgaggttgcagagagccaagatcgtgtcattgcactccagcctgggcaacaagagcaaaactct
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141739 257 -    177848 acctgtaatcgcagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaataccaa-attagctgggcatggtggcaggtgcccgtaatccaagcgactcgggaggctgaggcaggagaattgcttaaactcgggaggctgaggttgcagagagccaagatcgtgtcattgcactccagcctgggcaacaagagcaaaactct
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       304562 257 +    417917 acctgtaatcgcagcactttgggaagctgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccctgtctctactgaaaatgccaa-attagctgggcatggtggcaggtgcctgtaatcccagctactcggtaggctgaggcaggagaattgcttaaacccgggaggctgaggttgcagagagccaagatcgtgtcattgcactccagcctgggcaacaagagcaaaactct
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148624 258 + 149150640 gcctgtcatcccagcactttgggaggccgaggcgagtggatcatctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagtcaggcgcggtgggaggtgtctctgatccccgctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccgagatcgtgtcattgcactccagcctgggcgacaagagtgaaactct
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        16783 256 -     20017 gcctgtaatcccagcactttgggaggccgaggcgagtggatcaactgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacacaaattagccgggcgtggtggcacatgcctatagtcccagacacttgggaggctgagggaggagaatcacttgaacccaggaggcagaggttacagggagccgatatcctgccattgcactccagcctgggcgacaagagtgaaact--
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       401185 258 +  25972781 gcctgtaatcccagcactttgggaggccgaggcgagtggatcatctgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctgctaaaaatacaaaaattagtcgggcgtggtgggaggtgtctgttatcccagctactcgggaggctgaggcgggagaatcacttgaacccgggaggcggaggttgcagtgagccgagatcgtgtcattgcactccagcctgggcgacaagagtgaaactct
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     201238 258 -    811265 gcctgtcatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaatattagctgggcgtggtggcaggtgcctataatccaagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgtagtgagccaagatcgtgtcattgcaccccagcctgggcgacaagagtgaaactcT
i chlSab2.chrUn_KE147541v1     C 0 I 7947
s colAng1.NW_012115411v1       383705 258 +   1230721 gcccgtgatcccagcactttgggaggccgaggtaggtggatcatctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccatctgtactaaaaatacaaatattagccgggcgtggtggtgggtgcctataatccaagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgtgtcattgtactccagcctgggtgacaagagtgaaactct
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296   0 -   1025902 C

a score=6788.000000
s hg38.chrX_KI270880v1_alt     229684 18 +    284869 gtaaaaacaaacaaacaa
s panTro5.chrX                 413423 18 + 155549662 gtaaaaacaaacaaacaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 141996 17 -    177848 gt-aaaacaaacaaacaa
i panPan2.chrUn_NW_014024190v1 C 0 M 1371
s gorGor5.CYUI01015925v1       304819 18 +    417917 gtAAaaacaaacaaacaa
i gorGor5.CYUI01015925v1       C 0 I 2
s rheMac8.chrX                 148882 16 + 149150640 --taaaaaaaaaaaaaaa
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        17039  7 -     20017 -----------gcaagag
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       401443 16 +  25972781 --taaaaaaaaaaaaaaa
i macNem1.NW_012017243v1       C 0 C 0
s colAng1.NW_012115411v1       383963  6 +   1230721 gttaaa------------
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     201496 7947 -    811265 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C

a score=755.000000
s hg38.chrX_KI270880v1_alt     229702 3 +    284869 caa
s gorGor5.CYUI01015925v1       304839 3 +    417917 aaa
i gorGor5.CYUI01015925v1       I 2 C 0
s rheMac8.chrX                 148898 3 + 149150640 gga
i rheMac8.chrX                 C 0 I 8
s macFas5.chrUn_KE146137        17046 3 -     20017 caa
i macFas5.chrUn_KE146137       C 0 I 8
s macNem1.NW_012017243v1       401459 3 +  25972781 aaa
i macNem1.NW_012017243v1       C 0 I 33
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e panTro5.chrX                 413441 0 + 155549662 C
e chlSab2.chrUn_KE147541v1     201496 7947 -    811265 I
e cerAty1.NW_012001098v1       268296 0 -   1025902 C
e colAng1.NW_012115411v1       383969 0 +   1230721 C
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=13078.000000
s hg38.chrX_KI270880v1_alt     229705 28 +    284869 caaaaaaaaaaAATAGAGAGAGAGAGAG
s panTro5.chrX                 413441 25 + 155549662 ---aaaaaagagagagagagagagagaA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       304842 28 +    417917 caaacaaaagagagagagagagagagaA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148909 21 + 149150640 aaaaaaaaaaaaaaaaaGAGA-------
i rheMac8.chrX                 I 8 C 0
s macFas5.chrUn_KE146137        17057 19 -     20017 caaaaaaaaaaaaCaatta---------
i macFas5.chrUn_KE146137       I 8 C 0
s colAng1.NW_012115411v1       383969 26 +   1230721 -aaaaaaaaaaaaaagagagagagaga-
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     201496 7947 -    811265 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e macNem1.NW_012017243v1       401462 33 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=78832.000000
s hg38.chrX_KI270880v1_alt     229733 52 +    284869 AAGGggctgggcgcagtggctcatgcctgtaatcccagcatattgggaggcc
s panTro5.chrX                 413466 52 + 155549662 AAGGggctgggcgcagtggctcatgcctgtaatcccagcatattgggaggcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       304870 52 +    417917 AAGGggctgggcgcagtggctcatgcctgtaatcccagcatattgggaagcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148930 52 + 149150640 AAAGggccaggcacagtggctcatgcctgtaatcccagcaatttgggaggcc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        17076 47 -     20017 -----gctgggcgtggtggcaggtgcctgtcatcccagctactcgggaggct
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       401495 52 +  25972781 AAAGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggcc
i macNem1.NW_012017243v1       I 33 C 0
s colAng1.NW_012115411v1       383995 52 +   1230721 aaAGggccaggcacagtggctcacgcctgtaatcccagcagtttgggaggcc
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     201496 7947 -    811265 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=12817.000000
s hg38.chrX_KI270880v1_alt     229785 6 +    284869 gaggca
s panTro5.chrX                 413518 6 + 155549662 gaggca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       304922 6 +    417917 gaggca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148982 6 + 149150640 gagacg
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        17123 6 -     20017 gaggca
i macFas5.chrUn_KE146137       C 0 I 522
s macNem1.NW_012017243v1       401547 6 +  25972781 gaggcg
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     209443 6 -    811265 gaggcg
i chlSab2.chrUn_KE147541v1     I 7947 C 0
s colAng1.NW_012115411v1       384047 6 +   1230721 gagacg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296 0 -   1025902 C
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=508456.000000
s hg38.chrX_KI270880v1_alt     229791 235 +    284869 ggcagatcacctgaggttaggagttcgagaccagcctggccaacatggtgaaaccccatctctact---aaaaatac--aaaaattagcagggcctgttggtggacgcctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgaactgagatcaccccattgcactccagcctggacgacaagagcgagacttcgtctcaaaaaa
s panTro5.chrX                 413524 235 + 155549662 ggcagatcacctgaggtcaggagttcgataccagcctggccaacatggtgaaaccccgtctctact---aaaaatac--aaaaattagcagggcgtgttggtgggcgcctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgaactgagatcaccccattgcactccagcctggatgacaagagcgagacttcgtctcaaaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       304928 234 +    417917 -gcagatcacctgaggtcaggagttcgagaccagcctggccaatatggtgaaaccccgtctctact---aaaaatac--aaaaattagcagggcgtgttggtgggtgcctgtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtagaggttgcagtgaactgagatcgtgccattgcactccagcctgggcgacaagagcgagacttcatctcaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 148988 232 + 149150640 ggcagatcaactgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact---aaaaatac--acaaattagccgggcgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggtgac-aga--gagactccgtctcaaaaaa
i rheMac8.chrX                 C 0 I 930
s macFas5.chrUn_KE146137        17651 235 -     20017 ggcagatcacctgcggtcaggagttcgagaccagcccggccaacatggcgaaaccccatctgtact---aaaaatac-aaaaaattaactgggcatggtggcaggtgcctgtcatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgaactgagatcgcctcactacactccagcctggacgacaagagcgagactttgtctcaaaaa-
i macFas5.chrUn_KE146137       I 522 C 0
s macNem1.NW_012017243v1       401553 234 +  25972781 ggtggatcatctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact---aaaaatac--aaaaattagccgggcgtggtggcaggtgcctgttatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggagattgcagtgagctgagatccggccactgcactccagcctgggcgac-agagcgagactccgtctcaaaaaa
i macNem1.NW_012017243v1       C 0 I 2266
s chlSab2.chrUn_KE147541v1     209449 236 -    811265 ggcggttcacctgcggtcaggagttcgagaccagcccggccaacatggcgaaaccccatctgtact---aaaaatac-aaaaaattaaccgggcacggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatcgtctcactacactccagcctggacgacaagagcgagactccgtctcaaaaaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       384053 237 +   1230721 ggcggatcac--gaggtcaggagatcgagaccagcctgactaacacggtgaaaccccgtctctactaaaaaaaatacaaaaaaactagccgggcgaggtggcgggtgcctgtcatcccagctactcaggagactgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgaactgagatggcgccgctgcactccagcctgggtgac-agagtgagactctgtctcaaaaaa
i colAng1.NW_012115411v1       C 0 I 4433
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296   0 -   1025902 C
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=153337.000000
s hg38.chrX_KI270880v1_alt     230026 218 +    284869 caaagcaacaaaacaaaacaaaacaaaaaacaaac---------aaaaaaacaactgtattgaggtttaattgacataccacgaaatgcattcattttgactatacagttcaatgcctcttagtaaatttgtagagttgcacgaccatcacca-aatctaattctggaatatttttatcaccccag-aaaagaaattgcatagctattgtcactcacttgtcttccctt
s panTro5.chrX                 413759 218 + 155549662 caaagcaacaaaacaaaacaaaacaaaaaacaaac---------aaaaaaacaactgtattgtggtttaattgacataccacgaaatgcattcattttgactatacagttcaacgcctcttagtaaatttgtagagttgcatgaccatcacca-aatctaattctggaatatttttatcaccccag-aaaagaaattgcatagctattggcactcacttgtcttccctt
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       305162 215 +    417917 caaagcaacaaaacaaaacaaaaCAAA----AAAC---------aaaaaaacaactgtattgaggtttaattgacataccacgaaatgcattcattttgactatacagttcaacgcctcttagtaaatttgtagagttccacgactgtcacca-aatctaattctggaatatttttatcaccccagaaaaagaaattgcatagctattggcactcacttgtcttccctt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        17886 212 -     20017 caaagcaacaaaacaaaaCCAACCGAC---CAAAC---------aaaaaaacaactttattgaggtttaatcaacatcccatgaaatgctttcattttgactatgcggttcaacgcttcttagtgaattcatagagttg-----ccatcaccacaatgtaattctggaatatttttatcacccccgaaaaagaaattgtagagctaacagcactcccttcgcttccctt
i macFas5.chrUn_KE146137       C 0 I 2
s chlSab2.chrUn_KE147541v1     209685 221 -    811265 caaagcaacaaaacaaaaCCAATCGAC---CGAACAAACAAACAaaaaaaacacctgtattgaggtttaatcgccatcccacgaaatgctttcattttgactatgcggttcaacgcttcttagtgaattcatagagttg-----ccatcaccacaatctaattctggaatatttttatcacccccgaaaaagaaattgcagagctaacagcactcccttctcttccctt
i chlSab2.chrUn_KE147541v1     C 0 I 9
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296   0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 149220 930 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=14016.000000
s hg38.chrX_KI270880v1_alt     230244 42 +    284869 atcccatttctgcccagagcctcaggcaaccactcatctcta
s panTro5.chrX                 413977 42 + 155549662 atcccatttctgcccagagcctcaggcaaccactcatctcta
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       305377 42 +    417917 atcccatttctgcccagagcctcaggcaaccactcatctcta
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        18100 22 -     20017 accccATTTCTGCCCGTAGCCT--------------------
i macFas5.chrUn_KE146137       I 2 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     209906  9 -    811265 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 149220 930 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=22786.000000
s hg38.chrX_KI270880v1_alt     230286 48 +    284869 ttctgcctctatggattttccttttctgcgcaatttctttgcatcgaa
s panTro5.chrX                 414019 48 + 155549662 ttctgcctctatggattttccttttctgcacaatttcttcgcatagaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       305419 47 +    417917 ttctgcctctatggattttccttttctgcgcaatttcttcg-atagaa
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     209915 48 -    811265 ttctgcctctatggattttccttttctgcacaatttgtacgcatagaa
i chlSab2.chrUn_KE147541v1     I 9 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 149220 930 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e macFas5.chrUn_KE146137        18122  0 -     20017 C
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=822267.000000
s hg38.chrX_KI270880v1_alt     230334 741 +    284869 ttacacaatatggagtcttttatcccagacttctacttagcgttatgtttttgaggtgcatccgtgttggaccatatatcggtatgtcattggctgaataatattccattgcagggaaagaccaca------------------------------------------------------gtgtctttatctgttcacctgctgaaaa-gacataggctgtttacacgtcttggctgttacaaatcatgctgctagg--aatatttacctacaagtctttgagt-aaacataagttttcatttctcttgggtagacgcccacaggaggaattgctggattgaatggtgagtttgtgttcaactttttttttttttt-ttgatggggtctcact-ctgtcgcccaggctggagtgcagtggctcgatctcagctcaacacaacctccgcctccagggttcaagcgattctcctgcctcatcctcccgagtagctgggattacaggcgcc-----------------------------------------------------------caccaccacacccggctaatttttgtatttttag-----------------------------------------------------------taaagacggggtt--tctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccacctg-cctcggcctc-ccaaagtgctgggatgacaggtgtgtgtgttccactttttaagaaactgtcaatgtgttttccaaagtgactatatcagttgacatttctacacacagtggttctcacaaatacttaataacatcttttttttttt------gtagccattcctgtggatatgtagtggtatcttgtggttttaatgtc
s panTro5.chrX                 414067 806 + 155549662 ttacacaatatggagtcttttatcccagacttctacttagcgttatgtttttgaggtgcatccgtgttggaccatatatcagtatgtcattggctgaataatattccattgcagggaaagaccaca------------------------------------------------------gtgtctttatctgttcagctgctgaaaa-gacataggttgtttgcacgtcttggctgttacaaatcatgctgctaggggaatatttacctacaagtctttgagt-aaacataaggtttcatttctcttgggtagacgcccacaggaggaattgctggattgaatggtgagtttgtgttcaactttttttttttttt---gatggagtctcact-ctgtcgcccaggctggagtgcagtggctcgatctcagctcaatgcaacctccgcctccagggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccatgcccggctaatttttgtatttttagtaaagacggggtgatgacaggcatgcaccaccacacctggctaatttttgtatttttag-----------------------------------------------------------taaagacgtggtt--tctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccacccg-cctcggcctc-ccaaagtgctgggatgacaggtgtgtgtgttccactttttaagaaactgtcaatgtgttttccaaagcgactatatcagttgacatttctacacacagttgttctcacaaatacttaataacatctttttttttttttttttgtagccattcctgtgggtatgaaatggtatcttgtggttttaatGGC
i panTro5.chrX                 C 0 I 13
s gorGor5.CYUI01015925v1       305466 797 +    417917 ttacgcaatatgtagtcttttatcccagactt-tacttagcgttatgtttttgaggtgcatccgtgttggaccatatatcagtatgtcattggctgaataatattccattgcagggaaagaccaca------------------------------------------------------gtgtgtttatctgttcacctgctgaaaa-gacataggctgtttgcacgtcttggctgttacaaatcatgctgctagg--aatatttacctacaagtctttgagt-aaacataaggtttcatttctcttgggtagacgcccacaggaggaattgctggattgaatggtgagtttgtgttcaaGtttttttttttttttttgatggagtctcact-ctgtcgcccaggctggagtgcagtggctcgatctcagctcaacgcaacctccgcctcctgggttcaagcgattct-ctgcct----cctctgagtagctgggattacaggcgcctgccacca-----gcctaatttttt--tttttagtaaagacggggtgatgacaggcatgcaccaccacacc-ggctaatttttgtatttttag-----------------------------------------------------------taaagacggggtttctctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccacctgccctcggcctctccaaagtgctgggatgacaggtgtgtgtgttccactttttaagaaactgtcaatgtgttttccaaagtgactatatcagttgacatttctacacacagtggttctcacaaatacttaataacatttttttttttttttttttgtagccattcctgtgggtatgaagtggtatcttgtggttttaatgtc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 150150 743 + 149150640 ttacacaacatatagtcttttatcccagactgctacttagcttagtgtttttgaggtatacccgtgttggaacatatattagtatctcattggctgaataatactccattgcgggcaaagaccata------------------------------------------------------atttcttgatctgttcacctgctgttga----acagcctgttcgcacgtcttggctgttacaaatcgtgctgctagg--aatattgaccgacaggtctctgggt-aaatataagttttcatttctcttgggtagatgcccacaggaggaatggctggtttgaatggtgagcttgtgttcaactttttattgatttttttagtggtgtttctctcctgtcgcccaggccggagtgcagtggctgcatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggatgacaggtgtg-----------------------------------------------------------caccaccacacccgtctgatttttgtatttttag-----------------------------------------------------------tgaagatggggtt--tctccatgttggccgggctggtctcgaactcccgacctcaggtgatccacctg-ccccggcctc-ccaaagtgctgggatgacaggcgtgtgtgttccactttttacaaaactgtcaacgcgttttccaaagtgacagtatcagctgacatttctacacacagtgattctcacaaacacttaataacatcttttttttttttt---aatagccattcctgtgggtatgaagtgatatgtcgtggttttaacgtc
i rheMac8.chrX                 I 930 C 0
s macFas5.chrUn_KE146137        18122 743 -     20017 ttacacaacatatagtcttttatcccagactgctacttagcttagtgtttttgaggtatacccgtgttggaacatatattagtatctcattggctgaataatactccattgcgggcaaacaccata------------------------------------------------------atttcttgatctgttcacctgctgttga----acagcctgttcgcacgtcttggctgttacaaatcgtgctgctagg--aatattgaccgacaggtctctgagt-aaacataagttttcatttctcttgggtagacgcccacaggaggaacggctggtctgaatggtgagtttgtgttcaactttttattgatttttttagtggtgtttctctcctgtcgcccaggccggagtgcagtggctgcatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggatgacaggcgtg-----------------------------------------------------------caccaccacacccatctgatttttgtgtttttag-----------------------------------------------------------tgaagacggggtt--tctccatgttggccgggctggtctcgaactcccgacctcaggtgatccacctg-ccccggcctc-ccaaagtgctgggatgacaggcgtgtgtgttccactttttacaaaaccgtcaacgcgttttccaaagtgacagtatcagctgacatttctacacacagtgattgtcacaaacacttaataacatcttttttttttttt---aatagccattcctgtgggtatgaagtgatatgtcgtggttttaatgtc
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     209963 862 -    811265 ttacacaatatatagtcttttatcccagactgctacttagcttagtgtttttgaggtatacccgtgttggaacatatattaatatctcattggaggagtaatactccattgcgggcaaagactatggtctttgtgtggtcatccatcCACTCATGTATTTATTTATCTATCCATTGATCTATGTCttgatctgttcacctgctgttgaagacacagcctgttcgcgcgtcttggctgttacaaatcgtgctgctggg--aatattgaccgacaagtctttgagtaaaacataagttttcatttctcttgggtagacgcccccaggaggaatggctggtttgaatggtgagtttgtgttcaactttttattgatttttttaatggtgtctctctcctgtcacccaggctggagtgcagtggctcgatctcagctcaacgcaacctccacctcccgggttgaagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacc-----------------------------------------------------------tgccaccactcctggctaatttttgtatttttagtacagacggggtgattacaggcgtgcaccaccacacccgtctgatttttgtatttttactgaagatgggggt--tctgcatgttggccaggctggtcttgaactcccgacctcaggtgatccacctg-cctcggcctc-ccaaagtgctgggatgacaggcgtgtgtgttccactttttacaaaactgtcaatgcgttttccaaagtgacagcatcagttgacatttctacacacagtggttctcacaaatacttaatagcatctttttgttttttt--aaatagccattcctgtgggaatgaagtgatatgtcgtggttttaatGCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296   0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=14916.000000
s hg38.chrX_KI270880v1_alt     231075 21 +    284869 tcaaatgaggaaggatgttga
s gorGor5.CYUI01015925v1       306263 21 +    417917 tcaaatgaggaaggatgttga
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 150893 21 + 149150640 tgtaatgaggaaggatgttga
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        18865 21 -     20017 tgtaatgaggaaggatgttga
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     210825 21 -    811265 TGTAATGAAGAACGATGTAGA
i chlSab2.chrUn_KE147541v1     C 0 I 10
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e panTro5.chrX                 414873 13 + 155549662 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=13446.000000
s hg38.chrX_KI270880v1_alt     231096 26 +    284869 gACTCAATGCTGATTCAAGATCTACA
s gorGor5.CYUI01015925v1       306284 26 +    417917 gACTCAATGCTGATTCAAGATCTACA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 150914 26 + 149150640 gcctcAATGCTGACTCAAGATCTACA
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        18886 26 -     20017 gcctcAATGCTGACTCAAGATCTACA
i macFas5.chrUn_KE146137       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e panTro5.chrX                 414873 13 + 155549662 I
e chlSab2.chrUn_KE147541v1     210846 10 -    811265 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=8574.000000
s hg38.chrX_KI270880v1_alt     231122 10 +    284869 TAGTAggcca
s gorGor5.CYUI01015925v1       306310 10 +    417917 TAGTGggcca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 150940 10 + 149150640 TAGTAggcca
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        18912 10 -     20017 TAGCAggcca
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     210856 10 -    811265 TAGTAggcca
i chlSab2.chrUn_KE147541v1     I 10 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e panTro5.chrX                 414873 13 + 155549662 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=4650.000000
s hg38.chrX_KI270880v1_alt     231132 5 +    284869 ggagc
s panTro5.chrX                 414886 5 + 155549662 ggcgt
i panTro5.chrX                 I 13 C 0
s gorGor5.CYUI01015925v1       306320 5 +    417917 ggagc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 150950 5 + 149150640 ggtgc
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        18922 5 -     20017 ggtgc
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     210866 5 -    811265 ggtgc
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296 0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e panPan2.chrUn_NW_014024190v1 142013 1371 -    177848 M

a score=14543.000000
s hg38.chrX_KI270880v1_alt     231137 10 +    284869 agtgtctcat
s panTro5.chrX                 414891 10 + 155549662 agtggctcac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143417 10 -    177848 Agtggctcac
i panPan2.chrUn_NW_014024190v1 M 1371 C 0
s gorGor5.CYUI01015925v1       306325 10 +    417917 agtggctcat
i gorGor5.CYUI01015925v1       C 0 I 1
s rheMac8.chrX                 150955 10 + 149150640 ggtggctcaa
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        18927 10 -     20017 ggtggctcaa
i macFas5.chrUn_KE146137       C 0 C 0
s chlSab2.chrUn_KE147541v1     210871 10 -    811265 ggtggctcac
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268296  0 -   1025902 C
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=587086.000000
s hg38.chrX_KI270880v1_alt     231147 267 +    284869 gcctgtaatccc-agcactttgggaggctggggtgggcggatcgcgaggtcaggagatcgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaattcagccgggcatggtggcaggtccctgtagccccag-aaactcaggaggctgaggcaggagaattgcttgaaccagggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctgggtgacagagtgaga-ctccatctc-aaaaaa
s panTro5.chrX                 414901 267 + 155549662 gcccgtaatccc-agcactttgggaggctgaggtgggcggatcgcgaggtcaggagattgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaataatttaactgggcgtggtggcaggtccctgtagccccag-aaactcaggaggctgaggcaggagaattgcttgaaccagggaggcggaggttacagtgagctgagattgtgccactgcactccagcctgggtgacagagtgaga-ctccatctc-aaaaaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143427 268 -    177848 gcccgtaatccc-agcactttgggaggctgaggtgggcggatcgcgaggtcaggagattgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaataatttaactgggcgtggtggcaggtccctgtagccccag-aaactcaggaggctgaggcaggagaattgcttgaaccagggaggcggaggttacagtgagctgagattgtgccactgcactccagcctgggtgacagagtgaga-ctccatctcaaaaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306336 269 +    417917 gcctgtaatcccaagcactttgggaggctgaggtgggcggatcgcgaggtcaggagatcgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaatttagctgggcgtggtggcaggtccctgtagcccgagaaaactcaggaggctgaggcaggagaa-tgcttgaaccagggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagcgagacctccatctc-aaaaaa
i gorGor5.CYUI01015925v1       I 1 C 0
s rheMac8.chrX                 150965 266 + 149150640 gcctgtcatccc-agcactttgggaggcccagatgggcggatcacgaggtcaggagttcaagaccagcctaatcaacatggtgaaactccgtctctactaaaaatacaaaaatt-agccggctgtggtggcaggtgcctgtcatcccag-ctactcgggaggctgaggcaggagaattacttgaacccgggaggtggaagttgccgtgagccgagatctcgccactgtactccagcctgggcaacagagcgaga-ctccatctc-aaaaaa
i rheMac8.chrX                 C 0 I 275
s macFas5.chrUn_KE146137        18937 266 -     20017 gcctgtcatccc-agcactttgggaggccaagacgggcggatcacgaggtcaggagttcaagaccagcctgatcaacacggtgaaactccgtctctactaaaaatacaaagatt-agccggctgtggtggcaggtgcctgtcatcccag-ctactcgggaggctgaggcaggagaattacttgaacccgggaggtggaagttgccgtgagccgagatctcgccactgcactccagcctgggccacagagcgaga-ctccatctc-aaaaaa
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       268296 266 -   1025902 gcctgtcatccc-agcactttgggaggccaagatgggcggatcacgaggttaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatt-agctgggcgtggtggcaggtgcctgtcatcccag-caactcgggaggctgaggcaggagaattacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggtgagagagcgaga-ctccatctc-aaaaaa
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     210881 266 -    811265 gcctgtcatccc-agcactttgggaggccgaggcgggcggatcacgaggtcaggagttcaagaccagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaatt-agccgggcgtggtggcaggtgcctgtagttccag-ctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggagcttgcagtgagcccagatcgcaccactgcactccagcctgggcgacagaacgaga-ctccgtctc-aaaaaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=38128.000000
s hg38.chrX_KI270880v1_alt     231414 48 +    284869 caaaaacg-----aaaacaaaCAACAACAGAAAAACAAGATCTACATAGTTAT
s panTro5.chrX                 415168 48 + 155549662 caaaaaca-----aaaacaaaCAACAACAGAAAAACAAGATCTACATAGTTAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143695 48 -    177848 caaaaaca-----aaaacaaaCAACAACAGAAAAACAAGATCTACATAGTTAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306605 53 +    417917 caaaaacaaaaacaaaacaaacaaCAACAGAAAAACAAGATCTACATAGTTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19203 33 -     20017 -----------acaaaacagaacaaaacaaaa---------CTGCATAGTTAT
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       268562 28 -   1025902 ----------------acaaaacaaaacaaaa---------CTGCATAGTTAT
i cerAty1.NW_012001098v1       C 0 I 29
s chlSab2.chrUn_KE147541v1     211147 33 -    811265 -----------acaaaacagaacaaaaCAGAA---------CTCCATAGTTAT
i chlSab2.chrUn_KE147541v1     C 0 I 29
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=8226.000000
s hg38.chrX_KI270880v1_alt     231462 22 +    284869 AAGCCTCCATCAGaaacaaa-ca
s panTro5.chrX                 415216 22 + 155549662 AAGACTCCATCAGaaacaaa-ca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143743 22 -    177848 AAGACTCCATCAGaaacaaa-ca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306658 21 +    417917 AGA--TCCATCAGaaacaaacca
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19236 10 -     20017 ------------GACACAAA-TA
i macFas5.chrUn_KE146137       C 0 I 19
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     211180 29 -    811265 I
e cerAty1.NW_012001098v1       268590 29 -   1025902 I
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=23309.000000
s hg38.chrX_KI270880v1_alt     231484 47 +    284869 aacaaaaaaaacaaagaaaaC-CCAAAACATCTACGTAGTTATGAGAC
s panTro5.chrX                 415238 47 + 155549662 aacaaaaaaaccaacgaaaac-ccaaaACATCTACATAGTTATGAGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143765 47 -    177848 aacaaaaaaaccaacgaaaac-ccaaaACATCTACATAGTTATGAGAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306679 48 +    417917 aacaaaaaaaccaaagaaaACTCCAAAACATCTACATAGTTATGAGAC
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e manLeu1.NW_012108508v1       231396 2735 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     211180 29 -    811265 I
e cerAty1.NW_012001098v1       268590 29 -   1025902 I
e colAng1.NW_012115411v1       384290 4433 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e macFas5.chrUn_KE146137        19246 19 -     20017 I

a score=10638.000000
s hg38.chrX_KI270880v1_alt     231531 5 +    284869 TT--GAC
s panTro5.chrX                 415285 5 + 155549662 TT--GAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143812 5 -    177848 TT--GAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306727 7 +    417917 TTTGGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19265 5 -     20017 TT--GAT
i macFas5.chrUn_KE146137       I 19 C 0
s cerAty1.NW_012001098v1       268619 5 -   1025902 TT--GAT
i cerAty1.NW_012001098v1       I 29 C 0
s chlSab2.chrUn_KE147541v1     211209 5 -    811265 TT--GAT
i chlSab2.chrUn_KE147541v1     I 29 C 0
s manLeu1.NW_012108508v1       234131 5 -    350446 TT--GAT
i manLeu1.NW_012108508v1       I 2735 C 0
s colAng1.NW_012115411v1       388723 5 +   1230721 TT--GAT
i colAng1.NW_012115411v1       I 4433 C 0
e canFam3.chrX                 356163 3989 + 123869142 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=148479.000000
s hg38.chrX_KI270880v1_alt     231536 61 +    284869 TTTTGGA-GCTGACTTT--------------------------------TTGG-GATTAAATGACTCAGGTAAACTGGTTTATTTGTATGGCTAT
s panTro5.chrX                 415290 92 + 155549662 TTTTGGA-GCTGACTTTGGGATTAAATGGCTCAA-TTTTGGAGCTGACTTTGG-GATGAAATGACTCAAGTAAACTGGTTTATTTGTACAGCTAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143817 92 -    177848 TTTTGGA-GCTGACTTTGGGATTAAATGGCTCAA-TTTTGGAGCTGACTTTGG-GATGAAATGACTCAAGTAAACTGGTTTATTTGTACGGCTAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306734 93 +    417917 TTTTGGA-GCTGACTTTGGGATTAAATGACTCAATTTTTGGAGCTCACTTTGG-GATTAAATGACTCAAGTAAACTGGTTTATTTGTACAGCTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19270 58 -     20017 TTCTGGA-GCTGACT----------------------------------CTGG-GATTAAATGACTCGAGGAATCTGATTTA-TTGTATGGTTAT
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       268624 58 -   1025902 TTCTGGA-GCTGACT----------------------------------TTGG-GATTAAATGACTCGAGGAAACTGGTTTA-TTGTATGGCTAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211214 58 -    811265 TTCTGGA-GCTGACT----------------------------------TTGG-GATTAAATGACTCAAGGAAACTGGTTGA-TTGTACGGCTAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234136 58 -    350446 TTCTGGA-GCTGACT----------------------------------TTGG-GATTAAATGACTCGAGGAAACTGGTTTA-TTGTATGGCTAT
i manLeu1.NW_012108508v1       C 0 I 16
s colAng1.NW_012115411v1       388728 58 +   1230721 TTCTGGA-GCTGACT----------------------------------TTGG-GATGAAATGACTCAAGGAAACTGGTTTA-TTGTATGGCTAT
i colAng1.NW_012115411v1       C 0 I 25
s canFam3.chrX                 360152 59 + 123869142 TTTTGGATGTTGGCT----------------------------------CTGGCGTTTAAGCGGCTCAGGTCAACGGGTTC--CTGCTCGGCTGT
i canFam3.chrX                 I 3989 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=-1254.000000
s hg38.chrX_KI270880v1_alt     231597 5 +    284869 -CTTTT
s panTro5.chrX                 415382 5 + 155549662 -TTTTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143909 5 -    177848 -TTTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306827 5 +    417917 -TTTTC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19328 4 -     20017 -TTGT-
i macFas5.chrUn_KE146137       C 0 I 16
s cerAty1.NW_012001098v1       268682 4 -   1025902 -TTGT-
i cerAty1.NW_012001098v1       C 0 I 12
s chlSab2.chrUn_KE147541v1     211272 4 -    811265 -TTGT-
i chlSab2.chrUn_KE147541v1     C 0 I 13
s canFam3.chrX                 360211 5 + 123869142 CTTCT-
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234194 16 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       388786 25 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=2552.000000
s hg38.chrX_KI270880v1_alt     231602 1 +    284869 C
s panTro5.chrX                 415387 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143914 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306832 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19348 1 -     20017 C
i macFas5.chrUn_KE146137       I 16 C 0
s cerAty1.NW_012001098v1       268698 1 -   1025902 C
i cerAty1.NW_012001098v1       I 12 C 0
s chlSab2.chrUn_KE147541v1     211289 1 -    811265 C
i chlSab2.chrUn_KE147541v1     I 13 C 0
s manLeu1.NW_012108508v1       234210 1 -    350446 C
i manLeu1.NW_012108508v1       I 16 C 0
s canFam3.chrX                 360216 1 + 123869142 T
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       388786 25 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=67163.000000
s hg38.chrX_KI270880v1_alt     231603 23 +    284869 CCCC--AGGGAAAG-TGTTTGCTCAC
s panTro5.chrX                 415388 24 + 155549662 CCCC-CAGGGAAAG-TGTTTGCTCAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143915 25 -    177848 CCCCCCAGGGAAAG-TGCTTGCTCAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306833 23 +    417917 CCCC--AGGGAAAG-TGTTTGCTCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19349 22 -     20017 CCCC--AGGGAAAC-GGTTTGCTCA-
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       268699 22 -   1025902 CCCC--AGGGAAAG-GGTTTGCTCA-
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211290 23 -    811265 CCCC--AGGGAAAG-GGTTTGCTGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234211 23 -    350446 CCCC--AGGGAAAG-CGTTTGCTCAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       388811 23 +   1230721 CCCC--AGGGAAAG-TGTTTGCTCAC
i colAng1.NW_012115411v1       I 25 I 76
s canFam3.chrX                 360217 24 + 123869142 CCCC--AGGGGAAGTTGTTTGCTCGC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=3105.000000
s hg38.chrX_KI270880v1_alt     231626 3 +    284869 CTA
s panTro5.chrX                 415412 3 + 155549662 CTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143940 3 -    177848 CTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306856 3 +    417917 CTA
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211313 3 -    811265 GTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234234 3 -    350446 CTA
i manLeu1.NW_012108508v1       C 0 I 104
e canFam3.chrX                 360241 0 + 123869142 C
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268721 0 -   1025902 C
e colAng1.NW_012115411v1       388834 76 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I
e macFas5.chrUn_KE146137        19371 0 -     20017 C

a score=43644.000000
s hg38.chrX_KI270880v1_alt     231629 29 +    284869 TCCCTACAACAAAATGTAAGCAGATCCAA
s panTro5.chrX                 415415 29 + 155549662 TCCCTACAACAAAATGTAAGCAGATCCAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143943 29 -    177848 TCCCTACAACAAAATGTAAGCAGATCCAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306859 29 +    417917 TCCCTACAACAAAATGTAAGCAGATCCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19371 27 -     20017 --CGTACAACAAAATGTAAGCGGGTCCAA
i macFas5.chrUn_KE146137       C 0 I 2
s cerAty1.NW_012001098v1       268721 27 -   1025902 --CCTACAACAAAATGTAAGCGGGTCCAA
i cerAty1.NW_012001098v1       C 0 I 18
s chlSab2.chrUn_KE147541v1     211316 23 -    811265 ------CAACAAAATGTAAGCGGGTCCAA
i chlSab2.chrUn_KE147541v1     C 0 I 2
s canFam3.chrX                 360241 19 + 123869142 ----------GAAACGCGCGGAGAGTGAG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234237 104 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       388834 76 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=16884.000000
s hg38.chrX_KI270880v1_alt     231658 12 +    284869 TGAATGAGGTGA
s panTro5.chrX                 415444 12 + 155549662 TGAATGAGATGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143972 12 -    177848 TGAATGAGATGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306888 12 +    417917 TGAACGAGATGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19400 12 -     20017 TGAATAAGACAG
i macFas5.chrUn_KE146137       I 2 C 0
s chlSab2.chrUn_KE147541v1     211341 12 -    811265 TGAATAAGACAG
i chlSab2.chrUn_KE147541v1     I 2 C 0
s canFam3.chrX                 360260 12 + 123869142 TGAATGAGATAA
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234237 104 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e cerAty1.NW_012001098v1       268748 18 -   1025902 I
e colAng1.NW_012115411v1       388834 76 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=44703.000000
s hg38.chrX_KI270880v1_alt     231670 35 +    284869 ATTCTTGGGGTGGATGGAAACTC-ATCCCATGTGGC
s panTro5.chrX                 415456 35 + 155549662 ATTCTCGGGGTGGATGGAAACTC-ATCCCATGTGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 143984 35 -    177848 ATTCTCGGGGTGGATGGAAACTC-ATCCCATGTGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306900 36 +    417917 ATTCTCGGGGTGGATGGAAACTCAATCCCGTATGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19412 35 -     20017 ATTCTCGGTGTGGCTGGAAAAGC-GTTTAATGTGTT
i macFas5.chrUn_KE146137       C 0 C 0
s cerAty1.NW_012001098v1       268766 35 -   1025902 ATTCTCGGCGTGGCTGGAAAAGC-GTTTAATGTGTT
i cerAty1.NW_012001098v1       I 18 C 0
s chlSab2.chrUn_KE147541v1     211353 35 -    811265 ATTCTCGGCGTGGCTGGAAAAGC-GTTTAATGTGTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s canFam3.chrX                 360272 31 + 123869142 ATTGAC-GCACGAATGAATA----GTCCAATGTGGC
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234237 104 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       388834 76 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       401787 2266 +  25972781 I

a score=88597.000000
s hg38.chrX_KI270880v1_alt     231705 31 +    284869 TTTGTCATTTTGATCTCCGTGATGGGATGCG
s panTro5.chrX                 415491 31 + 155549662 TTTGTCATTTTGATCTCCGTGATGGGATGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144019 31 -    177848 TTTGCCATTTTGATCTCCGTGATGGGATGCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306936 31 +    417917 TTTATCATTTTGATCTCCATGATGGGATGCA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_KE146137        19447 31 -     20017 TTTATCATTTGGAACTCCTTGAGGGGACGCA
i macFas5.chrUn_KE146137       C 0 I 1
s macNem1.NW_012017243v1       404053 31 +  25972781 TTTATCATTTGGAACTCCTTGAGGGGACGCA
i macNem1.NW_012017243v1       I 2266 I 1
s cerAty1.NW_012001098v1       268801 31 -   1025902 TTTATCATTTGGAACTCCTTGAGGGGACGCA
i cerAty1.NW_012001098v1       C 0 I 1
s chlSab2.chrUn_KE147541v1     211388 31 -    811265 TGGATCATTTGGATCTCCTTGAGGGGACGCA
i chlSab2.chrUn_KE147541v1     C 0 I 1
s colAng1.NW_012115411v1       388910 31 +   1230721 TTTATCATTTTGATCTCCTTGAGGGGACGCA
i colAng1.NW_012115411v1       I 76 I 1
s canFam3.chrX                 360303 31 + 123869142 TTTATCATTTTAATCTTCTTGATGACAAAAG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234237 104 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e rheMac8.chrX                 151231 275 + 149150640 I

a score=1000.000000
s hg38.chrX_KI270880v1_alt     231736 1 +    284869 C
s panTro5.chrX                 415522 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144050 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306967 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s canFam3.chrX                 360334 1 + 123869142 C
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       234237 104 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e chlSab2.chrUn_KE147541v1     211419 1 -    811265 I
e cerAty1.NW_012001098v1       268832 1 -   1025902 I
e colAng1.NW_012115411v1       388941 1 +   1230721 I
e rheMac8.chrX                 151231 275 + 149150640 I
e macNem1.NW_012017243v1       404084 1 +  25972781 I
e macFas5.chrUn_KE146137        19478 1 -     20017 I

a score=159082.000000
s hg38.chrX_KI270880v1_alt     231737 33 +    284869 CGTTTTGTCGAAGAGGGTAGCTGTC-CATCTCCC
s panTro5.chrX                 415523 33 + 155549662 CGTTTTGTCAAAGAGGGTAGCTGTC-CATCTCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144051 33 -    177848 CGTTTTGTCAAAGAGGGTAGCTGTC-CATCTCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       306968 33 +    417917 CGTTTTGTCGAAGAGGGTAGCTGTC-CATCTCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151506 33 + 149150640 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCTCTC
i rheMac8.chrX                 I 275 C 0
s macFas5.chrUn_KE146137        19479 33 -     20017 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCTCTC
i macFas5.chrUn_KE146137       I 1 C 0
s macNem1.NW_012017243v1       404085 33 +  25972781 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCTCTC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1       268833 33 -   1025902 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCTCTC
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1     211420 33 -    811265 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCGCTC
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1       234341 33 -    350446 CGTTTTGTCGAAGCGGGTGGCTGTC-CGTCTCTC
i manLeu1.NW_012108508v1       I 104 C 0
s colAng1.NW_012115411v1       388942 33 +   1230721 CGTTTTGTCGAAGCAGGTGGCTGTC-CGTCTCCC
i colAng1.NW_012115411v1       I 1 I 20
s canFam3.chrX                 360335 33 + 123869142 -CATTTGCTGGACTTGGTGACTGTCTTGTTTCTC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I

a score=199873.000000
s hg38.chrX_KI270880v1_alt     231770 52 +    284869 TTCCTGGGG-ATCCTGGATTCATTAATTTCCTGATCACGTATTTCTTTCGTCC
s panTro5.chrX                 415556 52 + 155549662 TTCCTGGGG-ATCCTGGATTCATTAATTTCCTGATCACGTATTTCTTTCGTCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144084 52 -    177848 TTCCTGGGG-ATCCTGGATTCATTAATTTCCTGATCACGTATTTCTTTCGTCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307001 51 +    417917 TTCCT-GGG-ATCCTGGATTCATTAATTTCCTGCTCACGTATTTCTTTCGTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151539 52 + 149150640 TTTCTGGGG-ATGCTGGATTCATTCTTTTCCTGATCACGCATTTCTTTGGTCA
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        19512 52 -     20017 TTTCTGGGG-ATGCTGGATTCATTATTTTCCTGATCACGCATTTCTTTGGTCA
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       404118 52 +  25972781 TTTCTGGGG-ATGCTGGATTCATTATTTTCCTGATCACGCATTTCTTTGGTCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       268866 52 -   1025902 TTTCTGGGG-ATGCTGGATTCATTATTTTCCTGATCACGCATTTCTTTGGTCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211453 53 -    811265 TTTCTGGGGAATGCTGGATTCATTATTTTCCTGATCACGCATTTCTTTGGTCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234374 52 -    350446 TTTCTGGGG-ATGCTGGATTCATTATTTTCCTGATCACGCATTTCTTTGGTCA
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 360368 48 + 123869142 CTCC----A-GTGCTGGATTCATTATGTTCCTCATGGCAGATTGCTTTGGTCA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       388975 20 +   1230721 I

a score=284737.000000
s hg38.chrX_KI270880v1_alt     231822 53 +    284869 CTGCTCTTAATGTCCGTGCCCCAGTTTAGAGGACAGA----CCTGCCTGAAGGCTTT
s panTro5.chrX                 415608 53 + 155549662 CTGCTCTTAATGTCCGTGCCCCAGTTTAGAGGACAGA----CCTGCCTGAAGGCTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144136 53 -    177848 CTGCTCTTAATGTCCGTGCCCCAGTTTAGAGGACAGA----CCTGCCTGAAGGCTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307052 53 +    417917 CTGCTCTTAATGTCCGTACCCCAGTTTTGGGGACAGA----CCTGCCTGAAGGCTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151591 53 + 149150640 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGAAGGCCTT
i rheMac8.chrX                 C 0 I 3
s macFas5.chrUn_KE146137        19564 53 -     20017 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGAAGGCCTT
i macFas5.chrUn_KE146137       C 0 I 3
s macNem1.NW_012017243v1       404170 53 +  25972781 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGAAGGCCTT
i macNem1.NW_012017243v1       C 0 I 3
s cerAty1.NW_012001098v1       268918 53 -   1025902 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGAAGGCCTG
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1     211506 53 -    811265 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGGAGGCCTT
i chlSab2.chrUn_KE147541v1     C 0 I 3
s manLeu1.NW_012108508v1       234426 53 -    350446 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGCACAGA----CCTGCCTGAAGGCCTT
i manLeu1.NW_012108508v1       C 0 I 3
s colAng1.NW_012115411v1       388995 53 +   1230721 CTGCTCTTAATTTCCGTGCCCCAGTTTAGGGGACAGA----CCTGCCTGAAGGCTTT
i colAng1.NW_012115411v1       I 20 I 11
s canFam3.chrX                 360416 57 + 123869142 CTGCTCTTAATTTCGTCGCCACGGTTTAGAGGATGGAGGTGCCTGCCTGAAGGCTCT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I

a score=304783.000000
s hg38.chrX_KI270880v1_alt     231875 86 +    284869 CTGTATCTCTG-AACTGCACTAATCAGCTGTTCATAACTTCCATAGATGTCTAT-AAAATGTGCAGCTAGCAGGATTAAATGCTCTAC
s panTro5.chrX                 415661 86 + 155549662 CTGTATCTCTG-AACTGCACTAATCAGCTGTTCATAACTTCCACAGATGTCTAT-AAAATGTGCAGCTAGCAGGATTAAATGCTCTAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144189 86 -    177848 CTGTATCTCTG-AACTGCACTAATCAGCTGTTCATAACTTCCACAGATGTCTAT-AAAATGTGCAGCTAGCAGGATTAAATGCTCTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307105 45 +    417917 CTGCATC------------------------------------------TCTAT-AAAACGTGCAGCTAGCAGGATTAAATGCTCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151647 88 + 149150640 CTGTATCTCTGTAACTGCACTAATCAGCTGTTCGTAACTTCCACGGATGTCTATAAAAATGTGCACCTGCCAGGATTAAATGCCCCAC
i rheMac8.chrX                 I 3 C 0
s macFas5.chrUn_KE146137        19620 88 -     20017 CTGTATCTCTGTAACTGCACTAATCAGCTGTTCGTAACTTCCACGGATGTCTATAAAAATGTGCACCTGCCAGGATTAAATGCCCCAC
i macFas5.chrUn_KE146137       I 3 C 0
s macNem1.NW_012017243v1       404226 88 +  25972781 CTGTATCTCTGTAACTGCACTAATCAGCTGTTCGTAACTTCCACAGATGTCTATAAAAATGTGCACCTGCCAGGATTCAATGCCCCAC
i macNem1.NW_012017243v1       I 3 C 0
s cerAty1.NW_012001098v1       268974 88 -   1025902 CTGTATCTCTGTAACTGCACTAATCAGCTGTTGGTAACTTCCACAGATGTCTATAAAAATGTGCACCTGCCAGGATTAAATGCCCCAC
i cerAty1.NW_012001098v1       I 3 C 0
s chlSab2.chrUn_KE147541v1     211562 87 -    811265 CTGTATCTCTGTAACTGCACTAATCAGCTGTTCGTAACTTCCACCGATGTCTAT-AAAATGTGCACCTGCCAGGATTCAATGCCCCAC
i chlSab2.chrUn_KE147541v1     I 3 C 0
s manLeu1.NW_012108508v1       234482 87 -    350446 CTGTATCTCTGTAACTGCACTAATCAGCTGTTGGTAACTTGCACAGATGTCTAT-AAAATGTGCACCTGCCAGGATTAAATGCCCCAC
i manLeu1.NW_012108508v1       I 3 C 0
s canFam3.chrX                 360473 86 + 123869142 CTGTGGTTTTG-AGCCGCGCTAATCAGCCATTCATGATTTCCACAGATGTCTAT-GAAACGTGCCACTCCCGGGATTAAACGCCCCGC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             303704 2357 +  11138919 I
e colAng1.NW_012115411v1       389048 11 +   1230721 I

a score=35394.000000
s hg38.chrX_KI270880v1_alt     231961 11 +    284869 CTTCA-CCGTAC
s panTro5.chrX                 415747 11 + 155549662 CTTCA-CCGTAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144275 11 -    177848 CTTCA-CCGTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307150 11 +    417917 CTTCG-CTGTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151735 11 + 149150640 CTTCG-CCGTGT
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        19708 11 -     20017 CTTCG-CCGTGT
i macFas5.chrUn_KE146137       C 0 C 0
s macNem1.NW_012017243v1       404314 11 +  25972781 CTTCG-CCGTGT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       269062 11 -   1025902 CTTCG-CCGTGT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211649 12 -    811265 CTTCGCCCGTGT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234569 11 -    350446 CTTCG-CCGTGT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             306061 11 +  11138919 CTTGC-TCACAC
i otoGar3.GL873584             I 2357 C 0
s canFam3.chrX                 360559 11 + 123869142 GTCTG-TTGTGC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e colAng1.NW_012115411v1       389048 11 +   1230721 I

a score=1611680.000000
s hg38.chrX_KI270880v1_alt     231972 298 +    284869 GACAGACAGGAGTGTTCTCACTCACCACCAGAGCCTGCGCAG-----ATCAGTCCATTAATTA-GGTGGCTGTTGCTTGTGTCC-GAGATTATTTTCTGCTTATATAGAGGTTTCCCTGGCTGCATCAGCTGACTAGTTTTCCGAACAGATTTCAGCCAT-TCTTATTTATTTCCTCAGGCAAAGAAA---ATGTAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATGATAAATAAGACAAGAAGAG-TTTTCTCCTGTTTAAAAATTCCCTATATGACAAAATACACAGTTAAACTTTGTATGG
s panTro5.chrX                 415758 298 + 155549662 GACAGACAGGAGTGTTCTCACTCATCACCAGAGCCTGCGCAG-----ATCAGTCCATTAATTA-GGTGGCTGTTGCCTGTGTCC-GAGATTATTTTCTGCTTGTATAGAGGTTTCCCTGGCTGCATCAGCTGACTAGTTTTCCGAATAGATTTCAGCCAT-TTTTATTTATTTCCTCAGGCAAAGAAA---ATGTAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATGATAAATAAGACAAGGAGAG-TTTTCTCCTGTTTAAAAATTCCCTATATGACAAAATACACAGTTAAACTTTGTATGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144286 298 -    177848 GACAGACAGGAGTGTTCTCACTCACCACCAGAGCCTGCGCAG-----ATCAGTCCATTAATTA-GGTGGCTGTTGCTTGTGTCC-GAGATTATTTTCTGCTTATATAGAGGTTTCCCTGGCTGCATCAGCTGACTAGTTTTCTGAACAGATTTCAGCCAT-TCTTATTTATTTCCTCAGGCAAAGGAA---ATGTAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATGATAAATAAGACAAGGAGAG-TTTTCTCCTGTTTAAAAATTCCCTATATGACAAAATACACAGTTAAACTTTGTATGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307161 300 +    417917 GACAGACAGGAGTGTTCTCACTCACCACCAGAGCCTGCGCAG-----ATCAGTCCATTCATTA-GGTGGCTGTTGCTTGTGTCC-GAGATTATTTTCTGCTTATACAGAGGTTTCCCTGGCTGCATCAGCTGACTAGTTTTCCAAACGAATTTCAGCCAT-TCTTATTTATTTCCTCAGGCAAAGAAA---ATGTAAGCTTTTTTAAGAGAAAATACTTACCCTACTTTTAATGATAAATAAGACAAGGAGAGTTTTTCTCCTGTTTAAAAATTCCCTATATGACAAAATACACAGTTAAACTTCGTACGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 151746 298 + 149150640 GACACACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAG-----ATCGCTCCATTAATTAGGGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTATCTAGAGGTTTCTCTGGCTGCATCAGCGGACTCGTTTTCTGAACCAATGTCAGCCCT-TCTTATTTATTTCCTCAGGCAAAAAAATATATATAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATG----ATAAGGCAAGGAGAA-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGCCTGG
i rheMac8.chrX                 C 0 C 0
s macFas5.chrUn_KE146137        19719 298 -     20017 GACACACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAG-----ATCGCTCCATTAATTAGGGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTATCTAGAGGTTTCTCTGGCTGCATCAGCGGACTCGTTTTCTGAACCAATGTCAGCCCT-TCTTATTTATTTCCTCAGGCAAAAAAAAATATATAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATG----ATAAGGCAAGGAGAA-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGTCTGG
i macFas5.chrUn_KE146137       C 0 N 0
s macNem1.NW_012017243v1       404325 298 +  25972781 GACAGACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAG-----ATCGCTCCATTAATTAGGGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTATCTAGAGGTTTCTCTGGCTGCATCAGCGGACTCGTTTTCTGAACCAATGTCAGCCCT-TCTTATTTATTTCCTCAGGCAAAAAAAAATATATAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATG----ATAAGGCAAGGAGAA-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGTCTGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       269073 297 -   1025902 GACAGACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAG-----ATCACTCCGTTAATTAGGGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTACCTAGAGGTTTCTCTGGCTGCATCAGCGGACTCGTTTTCTGAACGAATGTCAGCCCT-TCTTATTTGTTTCCTCAGGCGAAGAAA-ATATATAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATG----ATAAGGCAAGGAGAA-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGTCTGG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211661 292 -    811265 GACAGACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAC-----ATCACTCCATTAATTA-GGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTACCTGGAGGTTTCTCTGGCTGCACCAGCGGACTCGTTTTCTGAACGAATGTCAGCCCT-TCTTATTTGTTTCCTCAGGCAAAGAAA-ATATATGAGC-TTTTTAAGAGAAAA----TACCCTACTTTTAATG----ATACGGCAAGGAGAG-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGTCCGG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234580 297 -    350446 GACAGACAGGACTGTCCTCAGTCACCGCCAGAGCCTGCGCAG-----ATCACTCCGTTAATTAGGGGGGTTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTACCTAGAGGTTTCTCTGGCTGCATCAGCGGACTCGGTTTCTGAACGAATGTCAGCCCT-TCTTATTTATTTCCTCAGGCAAAGAAC-ATATATAAGC-TTTTTAAGAGAAAATACTTACCCTACTTTTAATG----ATAAGGCAAGGAGAA-TTTTCTTCTGTTTAAAAATTCCCTGTATGACAAAATACACAGTTAAACTTTGTCTGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       389059 297 +   1230721 GACAGACAAGAGTGTCCTCGCTCACCGCCAGAGCCTGCGCAG-----ATCGCTCCATTAATTAGGGGGCCTCTCGCTTCTGTCC-GAGTTTATTTTCTGCTTACCTAGAGGTTTCTCTGGCTGCATCAGCGGACTAGTTTTCTGAGCAAACGTCAGCCCT-TCTTATTTATTTCCTCAGGCACAGAAA-ATATATCAGC-TTTTTAAGAGAAAATACTTACCCTGCTTTTAATG----ATAAGGCAAGGAGAG-TTTTCTCCTGTTTAAAAATTCCCTATATGACAAAATACACAGTTAAACTTTCTACGG
i colAng1.NW_012115411v1       I 11 C 0
s otoGar3.GL873584             306072 298 +  11138919 AGTGGACGGGAGCGTCTCCCCTCGTGGCTGCGGCCCCCACAG-----ATGCGTGAGTTAATTA-GGCTGCTTCTGC-GATGTCC-AAGCTTATTTTCTGCTTACATCGAGATTTCTCTGGCTGCACCAGCTGATTAGTTTCCTGAACAAATTTCATCCATCCCCTATTTATTTCCTCAGGCAAAGAAA---ATATAAGG-TTTTTAAGAGATAATACCTAACCTACTTATAACGATAAATAAGGCAAAGAGAG-TTTTCTCCTGTTTAAAAATTCCCTATATGACAAAACACACAGTCAAACTTTGTGTGA
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 360570 303 + 123869142 GGGAGACCAGAGTCTTTCCCTGCA-CGCCAGAGCCAGCACACGTAATATCAGTAAATTAATTA-TGCTACATTCACGTCTGCCCAAAGTTTAGTTTCTGCTTACACAGAGGATTCTCTGGCTGCACCGACTGATTCGTTTGCTGGACAAACTTCAACCGT-CCCCATTTATTTCCTCGGGCAAAGGAA---ATATGAAG-TTCTTAACAGAAAATACCTACCCTGCTTATAATGACAAATAAGGCAAGGGGAG-CTTTGCTCTGTTTAAAAATTCCCTGTATGATAGAACACACATTCAAACTCTGTGTGA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=292125.000000
s hg38.chrX_KI270880v1_alt     232270 70 +    284869 CTTAAAAATAGC--TTGCCCTATCGCTCCATAAACCAGGAAATATGGAATTCTT-GGATGGCCCTAAAGAAAT
s panTro5.chrX                 416056 70 + 155549662 CTTAAAAATAAC--TTGCCCTATCGCTCCATAAACAAGGAAATATGGAATTCTT-GGATGACCCTAAAGAAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144584 70 -    177848 CTTAAAAATAAC--TTGCCCTATCGCTCCATAAACCAGGAAATATGGAATTCTT-GGATGGCCCTAAAGAAAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307461 71 +    417917 CTTAAAAATAGC--TTGCCCTATCGCTCCATAAACCAGGAAATATGGAATTCTTGGGATGGCCCTAAAGAAAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 152044 70 + 149150640 -CTTAAAATAGC-TTTGCCGTATCGCTCCGTCAACAAGCGAACGTGGAATTCTT-GGATGACACTAAAGAAAT
i rheMac8.chrX                 C 0 I 48
s macNem1.NW_012017243v1       404623 71 +  25972781 CTTAAAAATAGC-TTTGCCGTATCGCTCCGTCAACAAGCGAACGTGGAATTCTT-GGATGACACTAAAGAAAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       269370 71 -   1025902 CTTAAAAATAGC-TTTGCCGTATGGCTCCGTCAACAAGCGAACCTGGAATTCTT-GGATGACACTAAAGAAAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     211953 72 -    811265 CTTAAAAATAGCTTTTGCCGTATCGCTCCGTCAACACGCGAACGTGGAATTCTT-GGATGACACTAAAGAAAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234877 71 -    350446 CTTAAAAATAGC-TTTGCCGTATGGTTCCGTCAACAGGCGAACCTGGAATTCTT-GGATGACACTAAAGAAAT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       389356 71 +   1230721 CTTAAAAATAGC-TTTGCCGTATCGCTCTGTCAACAAGGGAACATGGAATTCTT-GGATGACACTAAAGAAAT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             306370 70 +  11138919 TTTAAAAGTAGA--CTGCCCTGTCTCTCCATAAACAGGGGCACGAGGAGTCCCG-AGATGACACTGAAGAAAT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 360873 70 + 123869142 TTTAAAAATAGG--TTGCCCTATCTCTGCATAAACAAGTGCGCTTGGGATTCTT-GGATGGCGTTAAACAAAC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=137699.000000
s hg38.chrX_KI270880v1_alt     232340 45 +    284869 TTGGTGAGGAATCCAAGCCTTTTAAAAACTAGAT----AG--GCACAATCT
s panTro5.chrX                 416126 45 + 155549662 TTGGTGAGGAATCCAAGCCTTTTAAAAACTAGAT----GG--GCACAATCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144654 45 -    177848 TTGGTGAGGAATCCAAGCCTTTTAAAAACTAGAT----AG--GCACAATCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307532 45 +    417917 TTGGTAAGGAATCCAAGCCTTTTAAAAATTAGAT----AG--GCACAATCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       404694 49 +  25972781 GGGATGAGGAAGCTCAACCGTCTAAAAACTAGATAGACAG--ACACGGTCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       269441 45 -   1025902 GGGATGAGGAAGCTCAGCCTTCTAAAAACTAGAT----AG--ACACAGTCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     212025 45 -    811265 GGGATGAGGAAGCTCAGCCGTCTAAAAACTAGAT----AG--ACACAGTCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       234948 45 -    350446 GGGATGAGGAAGCTCAGCCGTCTAAAAACTAGAT----AG--ACACAGTCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       389427 45 +   1230721 GGGACGAGGAAGCTCAGCCTTCTAAAAACTAGAT----AG--ACACAGTCT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             306440 45 +  11138919 TTGGGGAGGACTCCCAGCCTTCTGTAAACCAGTT----AG--GTGTAACCT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 360943 47 + 123869142 CTGGGGAGGAATGCCAGCCTTCAGAGAAACAGAT----GGTCTCATAATCT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrX                 152114 48 + 149150640 I

a score=110098.000000
s hg38.chrX_KI270880v1_alt     232385 30 +    284869 AGACAC-ACATATTCAATGA--CAGGTTTTTTT
s panTro5.chrX                 416171 30 + 155549662 AGACAC-ACATATTCAATGA--CAGGTTTTTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144699 30 -    177848 AGACAC-ACATATTCAATGA--CAGGTTTTTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307577 30 +    417917 AGACAC-ACATATTCAATGA--CAGGTTTCTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrX                 152162 30 + 149150640 AGACAC-ATATATTCAATGA--CAGTTTTTTTT
i rheMac8.chrX                 I 48 I 2843
s macNem1.NW_012017243v1       404743 30 +  25972781 AGACAC-ATATATTCAATGA--CAGTTTTTTTT
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       269486 30 -   1025902 AGACAC-ATATATTCAATGA--CAGTTTTTTTT
i cerAty1.NW_012001098v1       C 0 I 3
s chlSab2.chrUn_KE147541v1     212070 30 -    811265 AGACAC-ATATATTCAATGG--CAGTTTTTTTT
i chlSab2.chrUn_KE147541v1     C 0 I 3
s manLeu1.NW_012108508v1       234993 30 -    350446 AGACAC-ATATATTCAGTGA--CACTTTTTTTT
i manLeu1.NW_012108508v1       C 0 I 2
s colAng1.NW_012115411v1       389472 30 +   1230721 AGACAC-ATGTATTCAATGA--CAGTTTTTTTT
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584             306485 30 +  11138919 AGGCAT-ATATACATGATGATGCAAGTTTTT--
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 360990 27 + 123869142 AAATACAATCTAAACATACG--CAACTTT----
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=579175.000000
s hg38.chrX_KI270880v1_alt     232415 162 +    284869 CTTACGTATCTGCccattcatctgcccatctatctcttcgtccattaatctttccatacatca--t-----------------------tccacccacccattcatccatt----cacccatccatccacccactcacccatctgctcatttatctacccatctatat------------atccatccat------------------------ccatccatccacc
s panTro5.chrX                 416201 166 + 155549662 CTTATGTATCTGCccattcatctgcccatctatctcttcgtccattcatctttccatacatca--t-----------------------tctacccacccattcatccatt----cacccatccatccacccactcactcatctgcttatttatctacccatctatat--------atccatccatccat------------------------ccatccatccacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144729 166 -    177848 CTTATGTATCTGCccattcatctgcccatctatctcttcgtccattcatctttccatacatca--t-----------------------tctacccacccattcatccatt----cacccatccatccacccactcactcatctgcttatttatctacccatctatat--------atccatccatccat------------------------ccatccatccacc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       307607 174 +    417917 CTTACGTATCTGCCCATTCATCTGCCCATCTATCTCTTCATCCATTCATCTTTCCATACATCA--T-----------------------TCCACCCACCCATTCATCCATT----CACCCATCCATCCACCCACTCACCCATCTGCCCATTTATCTACCCATCTATATatccatccatccatccatccat------------------------ccatccacccacc
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       404774 209 +  25972781 CTTATGTATCTGCccattcatctgcccatctatctctttatctattcatctttccatacgtcg--ttccagccagctcgttacacatcatccacccgcccattcatccatt----cacccatccatccacccactcacccatctgtccatttatctacccatct------------atccatctatccatctatccatccatccatccacccacccacccatccacc
i macNem1.NW_012017243v1       I 1 I 4
s cerAty1.NW_012001098v1       269519 185 -   1025902 CTTACGTATCTGCccattcatctgcccatctatctcttcgtccattcatctttccatacatcg--ttccaaccagctcgttacacatcatccacccgcccattcatccatt----cacccatccatccacccactcacccatctgtccatttatctacccatct------------acccatctatccat------------------------ccatccatccacc
i cerAty1.NW_012001098v1       I 3 I 4
s chlSab2.chrUn_KE147541v1     212103 185 -    811265 CTTACGTATCTGCccattcatctgcccatctatctctttgtccattcatctttccatacatcg--ttccaaccagctcgttacacatcatccacccgcccattcacccatt----cacccatccatccacccactcacccatctgtccatttatctacccatct------------atccatccatccat------------------------ccatccatccatc
i chlSab2.chrUn_KE147541v1     I 3 I 8
s manLeu1.NW_012108508v1       235025 187 -    350446 CTTACATATCTGCCCATTCATCTGCCCATCTATCTCTTTGTCCATTCATCTTTCCATACATCGTTTTCTGACCAGCTGGTTACAcatcatccacccgcccattcatccatt----cacccatccatccacccactcacccatctgtccgtttatctacccatct------------acccatctatccat------------------------ccatccatccacc
i manLeu1.NW_012108508v1       I 2 I 9082
s colAng1.NW_012115411v1       389503 185 +   1230721 CTTACGTATCTGCCCATTCATCTGCCCATCTATCTCTTCGTCCATTCATCTTTCCATACATCG--TTCCAACCAGCTGGTTACACTTcatccacccgcccattcatgcatt----cactcattcatccacccactcacccatctgtccatttatctacccatct------------atccatctatccat------------------------ccatccacccact
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584             306515 140 +  11138919 CTTACATAACTGCCCATTCATCCACCCATCTATTACTTCATCTGTTCATTCTtccatgca-----------------------------tccaaccacacatccgtccatc----catccat-catccacccaccc----------------ttctatccatc-------------ccccatccattctt------------------------ccatctatacacc
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 361017 153 + 123869142 ATTACGTGTGCATCCATCCAGTT-------------TCTATCCATAGATGCACCCATGTatcc--g-----------------------tccatccatccattagtccattaatccatccatccatccgtccactcatccatccatccatccgtccactcatcc------------atccatccatccat------------------------taatccatccacc
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrX                 152192 2843 + 149150640 I

a score=270900.000000
s hg38.chrX_KI270880v1_alt     232577 109 +    284869 tacccactcatccatccatttatccat-tatccatccaaccttccaatcatctatccatgcatccttccatccacccatc-catccatccatctactcattcattcattta
s panTro5.chrX                 416367 105 + 155549662 tacccactcatccatccatttatccat-tatccatccaaccttccaatcatctatccatgcatccttccat----ccatc-cacccatccatctactcattcattcattta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 144895 105 -    177848 tacccactcatccatccatttatccat-tatccatccaaccttccaatcatctatccatgcatccttccat----ccatc-cacccatccatctactcattcattcatTTA
i panPan2.chrUn_NW_014024190v1 C 0 M 970
s gorGor5.CYUI01015925v1       307781 101 +    417917 tacgcactcatccgtccatttatccat-tatccatccaactttccaatcatctatccatgcatcctt--------ccatc-cacccatccatctactcattcattcattta
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       404987 105 +  25972781 tacccactcatccatccattcatccat-tatccatccaaccttccaatcatccatctatctatgcttcctt----ccacc-catccatccatctactcattcattcatctg
i macNem1.NW_012017243v1       I 4 C 0
s cerAty1.NW_012001098v1       269708 105 -   1025902 tacccactcatccatccattcatccat-tatccatccaacctcccaatcatccatctagctatgcttcctt----ccacc-catccatccatctactcattcattcatctg
i cerAty1.NW_012001098v1       I 4 C 0
s chlSab2.chrUn_KE147541v1     212296 105 -    811265 cacccactcatccatccatccatccat-tatccatccaaccttccaatcatccgtctatctatgcttcctt----ccacc-catccatccatctactcattcattcatctg
i chlSab2.chrUn_KE147541v1     I 8 C 0
s colAng1.NW_012115411v1       389688  93 +   1230721 ------------tacccactcatccat-tatccatccaaccttccaatcatccatctatctatgcttcctt----ccacc-catccatccatctactcattcattcatctg
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             306655  83 +  11138919 tgtctattcatccatccatccatc----tgtctat---actt-----tcacccacccattcaccctcccat----ccatctcacccatccatcTTTTGA------------
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 361170  98 + 123869142 catccactcatccatccatccatccatgcatgcat--------ccactcacccatgcatccatccatccac----ccatc-catccctccctccactcatccatccaggta
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrX                 152192 2843 + 149150640 I

a score=105857.000000
s hg38.chrX_KI270880v1_alt     232686 47 +    284869 tccattattcattc-atctgttcattaatctatctatccatccat-cca
s panTro5.chrX                 416472 43 + 155549662 tccattattcatac-atctgttcatta----atctatccatccat-cca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       307882 49 +    417917 tccatgattcattcaatctgttcattcatctatctatccatccatgcca
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       405092 47 +  25972781 tccattattcattc-acctgttcactcatctatctatccatccat-cca
i macNem1.NW_012017243v1       C 0 I 2578
s cerAty1.NW_012001098v1       269813 47 -   1025902 tccattattcattc-atctgttcactcatctatgtatccatccat-cca
i cerAty1.NW_012001098v1       C 0 I 4333
s chlSab2.chrUn_KE147541v1     212401 47 -    811265 tccattattcattc-atctgttcactcatctatttatccatccat-cca
i chlSab2.chrUn_KE147541v1     C 0 I 3400
s colAng1.NW_012115411v1       389781 47 +   1230721 tccattattcattc-atctgttcactcatctatttacccatccat-cca
i colAng1.NW_012115411v1       C 0 I 5886
s otoGar3.GL873584             306738 44 +  11138919 ---ATTATTCTTAT-ATCTGTTCATTCATTTTTCAatccattcat-cta
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 361268 44 + 123869142 ---ctcatccatcc-atccattcatccatccatgtatccatccat-cca
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=296910.000000
s hg38.chrX_KI270880v1_alt     232733 594 +    284869 cccatccatccaaacttt----------------catccatccatccatccatccatccatccatccacctactgagaacatccatccatttatccatt-atgcattcaaccttccatccacccatccatctactcattcattcatttatccatgattcattcatctgttcattcatctatccatccacccacccatccatccaaccttccttcccttcatccatccatccacccacccatctacccatcgattcattcatccacccagccactcatctgtttattcatctatccatccattcacccacccatccatctgtccatccatccatc------------catccaaccattcacccatcttcccatttatctacccatctatccatccatgcatccatccatccatgcatgcatgcatccatccatccatccctccatccatccatccatcgacctacccactcatccatccattcatccattatgcatccaaccttccaatcatccatctatctatgcatccatccatccatccatccactcattcattcatctatccattattcattcatctatctatccatccgtccactcatccatccagccttccatccct
s panTro5.chrX                 416515 610 + 155549662 cccatccatccaaacttt----catccatccatccatccatccatccatccatccatccatccatccacctactgagaacatccatccatttatccatt-atgcattcaaccttccatccacccatccatctactcgttcattcatttatccatgattcattcatctgttcattcatctatccatccatccacccatccatccaaccttccttcccttcatccatccatccacccacccatctacccatcgattcattcatccacccagccactcatctgtttattcatctatccgtccattcacccaccgatccatctatccatccatccatc--------catacatacaaccattcacccatcttcccatttatctacccatctatccatccatgcatccatccatccatgcatccatccatctatccatccatccctccatccatccatccatcgacctacccactcatccatccattcatccattatgcatccaaccttccaatcatccatctatctatgcatctatccatccatccatccactcattcattcatctatccattattcattcatctatctatccatccgtccactcatccatccagccttccatccct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       307931 590 +    417917 cccatccatccaaactttcatccatccatccatccatccatccatccatccatccatccatccatccacctactgagaatatccatccatttattcatt-atgcattcaaccttccatccacccatccatctactcattcattcatttatccatgattcattcatctgttcattcatctatccatccatccacccatccatccaaccttccttcccttcatccatccatccacccacccaatctaccatcgattcatttatccacccagccactcctctgtttattcatctatccgtccattcacccacccatccatctatccatccatccatccatccatccatccatccaaccattcacccgtcttcccatttatctacccatctatccatccatgcatccatccatccatg--------------------------------catccatccatcgacctacccactcatccatccattcatccattatgcatccaaccttccaatcatccatctatctatgcatgcatccatccatccatccactcattgattcatctatccattattcattcatctatctatccatccgtccacttatccatccagccttccatccct
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             306782 505 +  11138919 -------------------------ccctccatccatccacccacacaccctcccatccatccacccatcctct-----catccacccatctatccattcatccattcaccctcccatccatccatccatctatcctttgattc-----------atccacatatctgctcattcatctttcaatctacccacccaaccaccta--------tccattcactcattcatccatccacccatccgcccatctatccatccatccaccatccc------------atccatccatccaaccatgtaccatcccatccatccatccat-cgctcatc------------cattcacccacttagccaccctcccattcaccctcccatccatccatccTTTGAT---TTCATCCGTA------------------TCTGTTCATTCATCTTTCAAtccatttatctatccattcatccatccacccaaccacc---tatccatccattcaatcattcattgattcatccatccatccattcacccatccactcttccattcacc---------------cacccatccaccctcccattcactctcccatcca----tcaatccc-
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 361312 494 + 123869142 --------------------ttaatccattaatccatccatccatccacccacccatccactcatccatccac------catccatccactcacccatgcatccatgcatccatgcatccatccatccatccactcatccatcc-----------aggtactcatc---tcatccatccatcgatccatccatccatccatcca-------tccgattaatccatccatccatccac---------------ttcatccatccatccatcc------------atccatccatccacccacccatccatccatccatccatccatccatccatc------------catccatccatccatccatccatccattcatccatccattcatccatccatgtatccatccatccatt----------------------------aacccattaatccatccatccatccacccacccatccactcatccatccaacatcca----tccactcacccatgcatccatgcatccatccatccatccatccatccatccatccatc-----------catccacccatctatccctccatccactcatccTCACAGCATTTCAGTCCT
i canFam3.chrX                 C 0 I 3406
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=27626.000000
s hg38.chrX_KI270880v1_alt     233327 148 +    284869 tc-ttccatccatccacccacccatctacccatcgattcattcatccacccagccactcatctatttatctatcaatccatccatccatccatccatccacccacccactcacccatctgcccatttatctacccatcttcccatccat
s panTro5.chrX                 417125  84 + 155549662 tc-ttccatcc----------------------------------------------------------------atccatccatccatccatccacccacccacccactcacccatcttcccatttatctacccatcttcccatccat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       308521 133 +    417917 tctttccatccatccacccacccatctacccatcaattcattcatccatccacccactc----------------atgtatttatttatctatccatccattaacccacccatccatctatccattcatccatccatccatccatccat
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             307287  98 +  11138919 ---ccccactcatcaatccacctatct------------------------------------------------atccatccaccctcccatccacccacccacccacccacccatcccttcacctgcccatccacctgcccatccat
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=32585.000000
s hg38.chrX_KI270880v1_alt     233475 140 +    284869 ccatcct----tccatccatccatccatccacccactcatccatccatccatccacctacccactcatccatccatttatccattatccatccaaccttccaatcatccgtctatctatgcatccttccatccatccatccatc
s panTro5.chrX                 417209 144 + 155549662 ccatccttccatccatccatccatccatccacccactcatccatccatccatccacctacccactaatccatccatttatccattatccatccaaccttccaatcatccctctatctatgcatccttccatccatccatccatc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       308654 144 +    417917 ccatccgtccatccatccactcatccatccatccaatcacccattcatccatctacctacccaatcatcaatccattcatctgttatctatccaacctaccaatcatccatctatatatgcatccattcatccatccatccatc
i gorGor5.CYUI01015925v1       C 0 I 126
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=3514.000000
s hg38.chrX_KI270880v1_alt     233615 44 +    284869 tacttattcattcatctatccattattcattcatctgtttgttc
s panTro5.chrX                 417353 44 + 155549662 tactttttcattcatctgtctattattcattcatctgtttattc
i panTro5.chrX                 C 0 I 4
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       308798 126 +    417917 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     233659 120 +    284869 atccatccatccatccatccatccatccaacattccatccattcatccatccacccactcatgtatttatttatctatccatccattaacccacccatccatctatctattcatccatcc
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385   0 +  11138919 C
e panTro5.chrX                 417397   4 + 155549662 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       308798 126 +    417917 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=21786.000000
s hg38.chrX_KI270880v1_alt     233779 241 +    284869 atccatccatccatccatccatccatccaacgttccatccattcatccatccacccactcatgtatttatttatctatccatccattaacccacccatccatctatccatccatccatccatccatccatcca----atcatccatctatccgtccatccattcactcatgcatccatccaatcatccattcatccatctacctacccaatcatccatccattcatctgttatctatccaaccta
s panTro5.chrX                 417401 245 + 155549662 atccatccatccatccaaccatccatccaacgttccatccattcatccatccacccactcatgtatttatttatctatccatccattaacccacccatccatctatccatccatccatccatccatccatccatccaatcatccatctatccgtccatccatccactcatgcatccatccaatcatccattcatccatctacctaccgaatcatccatccattcatctgttatctatccaaccta
i panTro5.chrX                 I 4 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       308798 126 +    417917 I
e panPan2.chrUn_NW_014024190v1 145000 970 -    177848 M

a score=77491.000000
s hg38.chrX_KI270880v1_alt     234020 317 +    284869 ccaatcatccatctatctatgcatccatccatccatccaccctcccatctatccatatatccattcatccatcaatccaaccactcattcttccatctatccatttttcattcttctattcattcatccatccatccatccactcatctattcagtcatccattcacccacccatctatccatccattcatccatccatccat----------------tcattcatccacacagccactcatctatttacttatctatccatccatccacccacccatccatcgatctatccatccacccatccgtctatccactcatccatccatccattg
s panTro5.chrX                 417646 316 + 155549662 ccaatcatccatctatctatgcatgcatgcatccatccatcctcccatctatccatatatccattcatccatcaatccaaccactcattcttc-atctatccatttttcattcttctattcat----ccatccatccatccactcatctattcagtcatccattcacccacccatctatccatccattcatccatccatccatccatccatccatccattcattcatccacccagccactcatctatttacttatctatccatccatccacccacccatccatc------------cacccatccaactatccactcatccatccatccattc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 145970 304 -    177848 CCAATcatccatctatctatgcatgcatgcatccatccatcctcccatctatccatatatccattcatccatcaatccaaccactcattcttc-atctatccatttttcattcttctattcat----ccatccatccatccactcatctattcagtcatccattcacccacccatctatccatccattcatccatccatccat------------ccattcattcatccacccagccactcatctatttacttatctatccatccatccacccacccatccatc------------cacccatccaactatccactcatccatccatccattc
i panPan2.chrUn_NW_014024190v1 M 970 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       308798 126 +    417917 I

a score=31385.000000
s hg38.chrX_KI270880v1_alt     234337 70 +    284869 atccattcacctacccattcatctatccatccatgcatccatccatcca-----------atc-atccatctatccattcat
s panTro5.chrX                 417962 78 + 155549662 atccattcatctacccattcatctatccatccatccatccatccatcca----tccatccatccatccatctatccattcat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 146274 82 -    177848 atccattcatctacccattcatctatccatccatccatccatccatccatccatccatccatccatccatctatccattcat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       308924 71 +    417917 atccattcacccacccatctatccatccatcc---catccatccatcca--------tccatccatccatccatccattcat
i gorGor5.CYUI01015925v1       I 126 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307385  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=126240.000000
s hg38.chrX_KI270880v1_alt     234407 203 +    284869 ccagccaCCTCAATAAGTTGAAGACTATCTGCCCCTTCCTGCAAAAACCTTATAATTTTTTG-AAATAAAAGAGTAAGATCAAGGGTCACCAACATACAATCTTCCCATTTGTTCCCAGGGTACAGCCACACTCTTGCGTTTTTGCATGATCTCTTCTAGGTGAATActt--ctctctcttccttcctctctctctctcttctttc
s panTro5.chrX                 418040 202 + 155549662 ccagccaCCTCAATAAGTTGAAGACTATCTGCCCCTTCCTGCAAAAACCTTATAATCTTTTG-AAATAAAAGAGTAAGATCAAGGATCACCATCATCCAGTCTTCCCATTTGTTCCCAGGG-ACAGCCACACTCTTGCGTTTTTGCATGATCTCTTCTAGGTGAATGCTt--ctctctcttccttcctctctctctctcttctttc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 146356 198 -    177848 ccagccaCCTCAATAAGTTGAAGACTATCTGCCCCTTCCTGCAAAAACCTTATAATCTTTTG-AAATAAAAGAGTAAGATCAAGGATCACCATCATCCAGTCTTCCCATTTGTTCCCAGGG-ACAGCCACACTCTTGCGTTTTTGCATGATCTCTTCTAGGTGAATGctt--ctctctcttccttc----ctctctctcttctttc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       308995 205 +    417917 ccaACCACCTCAATAAGTTGAAGACTATCTGCCCCTTCCTGCAAAAACCTTATAATCTTTTGAAAATAAAAGAGTAAGATCAAGGGTCACCAACATCCAATCTTCCCATTTGTCCCCAGGG-ACAGCCACACTCTTGCGTTTTTGCATGATCTCCTCTAGGTGAATGCTTTCctctctcttccttcctctctctctctcttctttc
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             307385 183 +  11138919 cTAGCCACCTCCATAAGTGG--------------CTTCCT------CCTTTAAAATCTCCTG-AAATAAAAGATCAACATTCAGGGTCACAAGCATTCAATCTTGTCATCTGTTCACAAGGTGCCCCTAAACTCTTGCATTTTCACTTTTTCTCTTCCATGTATGTATTT--TCATAGCCTACACTCACCCCTTCTCTCACCTGTC
i otoGar3.GL873584             C 0 I 4978
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=29306.000000
s hg38.chrX_KI270880v1_alt     234610 65 +    284869 tttcttccttc--ctctctctctctctcctttctttctttctctctttctctct-ttctttctttctt
s panTro5.chrX                 418242 66 + 155549662 tttcttccttc--ctctctctctctcttctttctttcttccttcctctctctctcttctttcttcctt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 146554 66 -    177848 tttcttccttc--ctctctctcttctttctttcttccttcctctctctctcttctttctttcttcctt
i panPan2.chrUn_NW_014024190v1 C 0 M 1522
s gorGor5.CYUI01015925v1       309200 68 +    417917 tttcttccttcctctctctctctctcttctttcttccttcctctctctctcttctttctttcttcctt
i gorGor5.CYUI01015925v1       C 0 I 1473
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=351.000000
s hg38.chrX_KI270880v1_alt     234675 5 +    284869 tcttc
s panTro5.chrX                 418308 5 + 155549662 ccttc
i panTro5.chrX                 C 0 I 225
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I
e panPan2.chrUn_NW_014024190v1 146620 1522 -    177848 M

a score=0.000000
s hg38.chrX_KI270880v1_alt     234680 139 +    284869 tttcttactctttctttctttctgtttctgtctttctttttctctcttcctttccttctttctttcttctttcttactctttctttctttctgtttctttttttctttttctctcttccttttcttccttctttctttc
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 418313 225 + 155549662 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I
e panPan2.chrUn_NW_014024190v1 146620 1522 -    177848 M

a score=9140.000000
s hg38.chrX_KI270880v1_alt     234819 120 +    284869 ttctttctctttctttctttatttctttcttctttctctttctctctttctttttctttctctttctctctctctttctctctttctttctttctttttttttctttcttctctcgtcct
s panTro5.chrX                 418538 119 + 155549662 ttctttctttctctttctctctttctttct-ctttctctctctctttctctctttctttctctttctctctctctttctctctctctttctttttctttttttctttcttctctcatcct
i panTro5.chrX                 I 225 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I
e panPan2.chrUn_NW_014024190v1 146620 1522 -    177848 M

a score=161540.000000
s hg38.chrX_KI270880v1_alt     234939 601 +    284869 ttccttctttccttctttcctgtctctctctccctttccctccttccttccttGCACATACACACAATCAGGCATAAAACATGCACAAACACACAGAAACACACACAAACGTGCACAAATACACACATATAAACAAATATACACAAACAGACGTGCAGAAACACACATGCATGCACAATCATGCAAACA--GACACACACAGACACACATATGAGCATGCGGAAACAGACATACATGCACAAATACACACAGACAAACATGCACAAACACACACATGCTCAGATACACAAAAAAAACCATGCACAGATACAGACATTCACAAATAAACTCACAAACATGCACAGATACACACAGTCATGCACACAAACATGCACAAATACACATAAACATACAGACACACAGACGAACATGCACACATATGAATGCACAAATACACGTACACACACACACAAAAAGCACAAATACATGCACACAAACACATAAAAACACACAAACACACACGTGCAGAGGAAATATTGTCTATattacaggcagctactgccatggccagctaattttttgtatttttagcagagatggggttttgccctgttggccaggctg
s panTro5.chrX                 418657 596 + 155549662 ttccttctttctttctttcctgtctctctctccctttccttccttccttccttGcacatacacacaatcaggcataaaacatgcacaaacacacagaaacacacacaaatgtgcacaaatacacacatataaacaaatctacacaaacagacgtgcagaaacacacatgcatgcacaatcatgcaaacacagacacacacagacacacatacgaacgtgcggaaacagacacacatgcacaaatacacacagacaaacatgcacaaacacacacatgctcagatacacaaaaaaa-ccatgcacagatacagacattcacaaa----ctcacaaacatgcacagatacacacagtcatgcacacaaacatgcacaaatacacataaacatacagacacacagacaaacatgcacacacatgaatgcacaaatgcacgtacacacacacacaaa--gcacaaatacatgcacacaaacacataaaaacacacaaacacacacGTGCAGAGGAAATATTGTCTATattacaggcagctactgccatggccagctaattttttgtatttttagcagaggtggggttttgccctgttggccaggctg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 148143 596 -    177848 ttccttctttctttctttcctgtctctctctccctttccttccttccttccttGCACATACACACAATCAGGCATAAAACATGCACAAACACACAGAAACACACACAAATGTGCACAAATACACACATATAAACAAATATACACAAACAGACGTGCAGAAACACACATGCATGCACAATCATGCAAACACAGACACACACAGACACACATACGAACGTGCGGAAACAGACACACATGCACAAATACACACAGACAAACATGCACAAACACACACATGCTCAGATACACAAAAAAA-CCATGCACAGATACAGACATTCACAAA----CTCACAAACATGCACAGATACACACAGTCATGCACACAAACATGCACAAATACACATAAACATACAGACACACAGACAAACATGCACACACATGAATGCACAAATACACGTACACACACACACAAA--GCACAAATACATGCACACAAACACATAAAAACACACAAACACACACGTGCAGAGGAAATATTGTCTATATTACACGCAGCTACTGccatggccagctaattttttgtatttttagcagaggtggggttttgccctgttggccaggctg
i panPan2.chrUn_NW_014024190v1 M 1522 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             259624 3357 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I

a score=69521.000000
s hg38.chrX_KI270880v1_alt     235540 204 +    284869 gtctcaaactccagacctcaggtgatccgcctgcctcagcctcgcaaagtgctgggatgacaggcatgagccaccacacccggccTGTGGTGTGA---------tttttttttttcttt--ttttgagaaggaattccactcttgttgcccaggctgtagtgcaatggtgcgacgtcagcttactgcaacctctgcctcccgggttcacaccatt-
s panTro5.chrX                 419253 204 + 155549662 gtctcaaactccagacctcaggtgatctgcctgcctcagcctcccaaagtgctgggatgacaggcatgagccagcacacccggcctgtggtgtga---------tttttttttttcttt--ttttgagaaggaattccactcttgttgcccaggctgtagtgcaatgatgcgatgtcagcttactgcaacctctgcctcccgggttcacaccatt-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 148739 201 -    177848 gtctcaaactccagacctcaggtgatccgcctgcctcagcctcccaaagtgctgggatgacaggcatgagccagcacacccggccTGTGGTGTGA------------ttttttttcttt--ttttgagaaggaattccactcttgttgcccaggctgtagtgcaatgctgcgatgtcagcttactgcaacctctgcctcccgggttcacaccatt-
i panPan2.chrUn_NW_014024190v1 C 0 I 645
s saiBol1.JH378345             199666 194 -    465904 gcccccaacttctgggctcaaaccaccctcccacttcaggaccccaagtagctgggactacaggcatgcaccagcgtgcccag--------GTAACTTATTAACTTTATTATTATCATTCAttttgggtcagagtctcgctc-tgttgcccaggctggagggcaatggcgcgatctcagctcactgcagcctc-------------caaagcgatc
i saiBol1.JH378345             T 26281 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I

a score=573.000000
s hg38.chrX_KI270880v1_alt     235744 2 +    284869 ct
s panTro5.chrX                 419457 2 + 155549662 ct
i panTro5.chrX                 C 0 I 133
s saiBol1.JH378345             199860 2 -    465904 ct
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e gorGor5.CYUI01015925v1       309268 1473 +    417917 I
e panPan2.chrUn_NW_014024190v1 148940 645 -    177848 I

a score=49071.000000
s hg38.chrX_KI270880v1_alt     235746 58 +    284869 cctgcctcagcctcccgagtagctgggattacaggcagctaccaccatgcccggctag
s panTro5.chrX                 419592 58 + 155549662 cctgcctcagcctcccaagtagctgggattacaggcacccaccactatgcctggctaa
i panTro5.chrX                 I 133 C 0
s panPan2.chrUn_NW_014024190v1 149585 58 -    177848 cctgcctcagcctcccaagtagctgggattacaggcacccaccactatgcctggctaa
i panPan2.chrUn_NW_014024190v1 I 645 C 0
s gorGor5.CYUI01015925v1       310741 58 +    417917 cctgcctcagcctcccaagtagctgggattacaggcacccaccaccatgcctggctaa
i gorGor5.CYUI01015925v1       I 1473 C 0
s saiBol1.JH378345             199862 58 -    465904 cctgcctcagcctcccacgtagctgggattacaggtgcccaccaccacgcatggctaa
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=121852.000000
s hg38.chrX_KI270880v1_alt     235804 149 +    284869 -ttttttgtatttttagtagagacggggtttcaccatgttggccaggctga-------------------------------tctcgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggtgtgagccaccgcactcggccTGCGGTGTGATTTTT
s panTro5.chrX                 419650 148 + 155549662 -ttttt-atatttttagtagagatggggtttcaccatgttggccaggctgg-------------------------------tctcaaactgctgacctcaggtaatccgcccgcctcagcctcccaaagtgctgggatgacaggtgtggggcaccacacctggccTGTGGTGTGATTTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149643 148 -    177848 -ttttt-atatttttagtagagatggggtttcaccatgttggccaggctgg-------------------------------tctcaaactgctgacctcaggtaatccgcccgcctcagcctcccaaagtgctgggatgacaggtgtggggcaccacacctggccTGTGGTGTGATTTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       310799 148 +    417917 -ttttt-atatttttagtagagatggggtttcaccatgttggccaggctgg-------------------------------tctcgaactgcagacctcaggtaatgccgccgcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgcactcggccTGCGGTGTGATTTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     2871 169 +     34961 -ttatt-ttatttt-----gagacggagtctcactctgtcgcccaggctggagtgcaatgacgtgatctcggctcactgcaacctccgcctttcgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccac-ctcgcccggc----taattttt
i macFas5.chrUn_AQIA01076778   N 0 I 34
s saiBol1.JH378345             199920 132 -    465904 tgtttt-gtatttttagtagagacggggtttcaccgtgttggccaggctgg-------------------------------tctcgaactcctgacctcaggtgatctggcccgctcgtcctcccaaagtgctggggtcacaggcatgagccatgacacccgg-----------------
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=7318.000000
s hg38.chrX_KI270880v1_alt     235953 27 +    284869 TATGTACCCAAACATACTGGCATTGCT
s panTro5.chrX                 419798 26 + 155549662 -AGGTACCCAAACATACTGGCATTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149791 26 -    177848 -AGGTACCCAAACATACTGGCATTGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       310947 25 +    417917 -ATGTACCCAAACATACTGGC-CTGCC
i gorGor5.CYUI01015925v1       C 0 C 0
s saiBol1.JH378345             200052  4 -    465904 ------ccCA-----------------
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I
e macFas5.chrUn_AQIA01076778     3040 34 +     34961 I

a score=27981.000000
s hg38.chrX_KI270880v1_alt     235980 51 +    284869 GCCGGGACGG--TCGACTGCCTGAGATTTCAATGCGTTTGTCGTTCGGATCTG
s panTro5.chrX                 419824 51 + 155549662 GCCGGGCCGG--TCGACTGCCTGAGATTTCAATGCGTTTGTCGTTCGGATCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149817 51 -    177848 GCCGGGCCGG--TCGACTGCCTGAGATTTCAATGCGTTTGTCGTTCGGATCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       310972 51 +    417917 GCCGGGCCGG--TCGACTGCCTGAGATTTCAACGCGTTTGTCGTTCGGATCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     3074 51 +     34961 gccaggatggtctcgaactcttgacctcatgattcatctgtc-tcagcctcc-
i macFas5.chrUn_AQIA01076778   I 34 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e saiBol1.JH378345             200056  0 -    465904 C
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     212448 3400 -    811265 I
e cerAty1.NW_012001098v1       269860 4333 -   1025902 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=11268.000000
s hg38.chrX_KI270880v1_alt     236031 8 +    284869 CAAGGGCG
s panTro5.chrX                 419875 8 + 155549662 CAAGGGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149868 8 -    177848 CAAGGGCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311023 8 +    417917 CAAGGGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     3125 8 +     34961 caaaAGCA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       274193 8 -   1025902 caaagGCA
i cerAty1.NW_012001098v1       I 4333 C 0
s chlSab2.chrUn_KE147541v1     215848 8 -    811265 caaagGCA
i chlSab2.chrUn_KE147541v1     I 3400 C 0
s saiBol1.JH378345             200056 2 -    465904 ------TG
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e manLeu1.NW_012108508v1       235212 9082 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I
e rheMac8.chrX                 152192 2843 + 149150640 I
e macNem1.NW_012017243v1       405139 2578 +  25972781 I

a score=301997.000000
s hg38.chrX_KI270880v1_alt     236039 78 +    284869 ATGAAAGTTTTAAAGTCCCCACGTGCTCAGGTGTCCTGTGGGTTGAGGTTCTTTACAGACAGGTTTCCACTCCCTTTG
s panTro5.chrX                 419883 78 + 155549662 ATGAAAGTTTTGAAGTCCCCACGTGCTCAGGTGTCCCGTGGATTGACGTTCTTCAGAGACAGCTTTCCACTCCCTTTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149876 78 -    177848 ATGAAAGTTTTGAAGTCCCCACGTGCTCAGGTGTCCCGTGGATTGAGGTTCTTCAGAGACAGGTTTCCACTCCCTTTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311031 78 +    417917 ATGAAAGTTTTGAAGTCCTCACGTGCTCAGGTGTCCTGTGGGTTGAGGTTCTTTAGAGACAGGTTTCCACTCCCTTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   3145 78 -     38397 ATGGAAGTTTTAAAGTCCCCACGTGCTCAGGAGTCCTGTGGGTTGAGAGTCTTTCAAGACAGATTTTTACTCCGTTTC
i rheMac8.chrUn_NW_014831239v1 n 2843 C 0
s macFas5.chrUn_AQIA01076778     3133 78 +     34961 ATGGAAGTTTTAAAGTCCCCACTTGCTCAGGAGTCCTGTGGGTTGAGAGTCTTTCAAGACAGATTTTTACTCCGTTTC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       407717 78 +  25972781 ATGGAAGTTTTAAAGTCCCCACGTGCTCAGGCGTCCTGTGGGTTGAGAGTCTTTCAAGACAGATTTTTACTCCGTTTC
i macNem1.NW_012017243v1       I 2578 C 0
s cerAty1.NW_012001098v1       274201 78 -   1025902 ATGGAAGTCTTAAAGTCCCCACGTGCTCAGGCGTCCTGTGGGTTGAGAGTCTTTCAAGACAGATTTTTACTCCATTTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     215856 78 -    811265 ATGGAAGTTTTAAAGTCCCCACCTGCTCAGGCATCCTGTGGGTTGAGAGTCTTTCAAGACAGATTTTTACTCCATTTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244294 78 -    350446 ATGAAAGTTTTAAAGTCCCCACCTGCTCAGGCGTCCTGTGGGTTGAGAATCTTTCAAGACAGATTTTTACTCCATTTC
i manLeu1.NW_012108508v1       I 9082 C 0
s saiBol1.JH378345             200058 78 -    465904 ACGAAAGTTTGAAAGTCCCTGGGAGCTCAGGTGTCCTGTGGGTTGACGTATTTGAGATAAAGGTTTCCGCTCTGTTCG
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e colAng1.NW_012115411v1       389828 5886 +   1230721 I

a score=638576.000000
s hg38.chrX_KI270880v1_alt     236117 134 +    284869 CTCCCAGATCTGAGC--CTCTGCTGAAGACAATGCCTCATCTTCGATGGG--AAAAAGGCACAAGTCTTTGGCGATTCCCTTTTTCGTTCTCATACGTAGAAACCCCACTGTCTTCTTCACGGCCAGTGACTCTGTCG
s panTro5.chrX                 419961 134 + 155549662 CTCCCAGATCTGAGC--CTCTGCTGAAGACAACGCCTCATCTTCGATGGG--AAAAAGGCACAAGTCTTTGGCGATTCCCTTTTTCGTTCTCATATGTAGAAACCCCACTGTCTTCTTCACGGCCAGTGACTCTGTCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 149954 134 -    177848 CTCCCAGATCTGAGC--CTCTGCTGAAGACAACGCCTCATCTTCGATGGG--AAAAAGGCACAAGTCTTTGGCGATTCCCTTTTTCGTTCTCATATGTAGAAACCCCACTGTCTTCTTCACGGCCAGTGACTCTGTCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311109 134 +    417917 CTCCCAGATCTGAGC--CTCTGCTGACGACAACGCCTCATCTTCGATGGG--AAAAAGGCACAAGTCTTTGGCGATTCCCTTTTTCGTTCTCATACGTAGAAACCCCACTGTCTTCTTCACGGCCAGTGACTCGGTCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   3223 134 -     38397 CTCCCAGATCTGAGC--CTATTCTGAAGACAACGCATCATCTCCAGCTGG--AAAAATGTACAAGTCTTCGGTGGTTCCATTTTTCCTTCTCATAAGTAGAAACCCCGCTGTCTTCTTCATGGCCAGTGACTCCCTCG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     3211 134 +     34961 CTCCCAGATCTGAGC--CTATTCTGAAGACAACGCATCATCTCCAGCTGG--AAAAATGTACAAGTCTTCGGTGGTTCCATTTTTCCTTCTCATACGTAGAAACCCCGCTGTCTTCTTCATGGCCAGTGACTCCCTCG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       407795 134 +  25972781 CTCCCAGATCTGAGC--CTATTCTGAAGACAACGCATCATCTCCAGCTGG--AAAAATGTACAAGTCTTCGGTGGTTCCATTTTTCCTTCTCATACGTAGAAACCCCGCTGTCTTCTTCATGGCCAGTGACTCCCTCG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       274279 134 -   1025902 CTCCCAGATCTGAGC--CTATTCTGAAGACAACACATCATCTTCAGCTGG--AAAAATGTACAAGTCTTCGGTGATTCCATTTTTCCTTCTCATACGTAGAAACCCCGCTGTCTTCTTCATGGCCAGTGACTCCCTCG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     215934 134 -    811265 CTCCCCGATCTGAGC--CTATTCTGAAGGCAACGCCTCATCTTCAGCTGG--AAAAATGTACAAGTCTTTGGTGATTCCATTTTTCCTTCCCATACGTAGAAACCCCACCGTCTTCTTCATGGCCAGTGACTCCCTCG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244372 134 -    350446 CTCCCAGATCTGAGC--CTATTCTGAAGACAGCGCATCATCTTCAGCTGG--AAAAATGTACAAGTCTTCGTTGATTCCGTTTTTCCTTCTTATACGTAGAAACCCCGCTGTCTTCTTCATGGCCAGTGACTCCCTCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       395714 134 +   1230721 CTCCCAGATCTGAGC--CTATTCTGAAGGCAACGTATCGTCTTCAGCTGG--AAAAAGGTACAAGTCTTCGGTGATTCCATTTTTGCTTCTCACACGTAGAAACCCCACTGTCTTCTTCATGGCCAGGGACTCCCTCA
i colAng1.NW_012115411v1       I 5886 I 131
s saiBol1.JH378345             200136 127 -    465904 CTCCCAGATCTGAGCCTCTCTGCTGAAGACAAAGCATCACCTTCGACGGGCAAAAAACCCACAAG----------ATCCCTTTTCTGTTCTTATATTTAGAGATCTCAGTGTTGTCTTCACGGACAGTGACTTTCTG-
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=244179.000000
s hg38.chrX_KI270880v1_alt     236251 52 +    284869 AATGTCCCAAGTCAACCG-GGGAGAAAA-CCCCAAATTATGAAACA-----ATTAAAAA
s panTro5.chrX                 420095 52 + 155549662 AATGTCCCAAGTCAACCG-GGGAGAAAA-CCCCAAATTATGAAACA-----ATTAAAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150088 52 -    177848 AATGTCCCAAGTCAACCG-GGGAGAAAA-CCCCAAATTATGAAACA-----ATTAAAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311243 53 +    417917 AATGTCCCAAGTCAACCG-GGGAGAAAACCCCCAAATTATGAAACA-----ATTAAAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   3357 52 -     38397 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----GTTCCACA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     3345 52 +     34961 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----GTTCCACA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       407929 52 +  25972781 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----GTTCCACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       274413 52 -   1025902 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----GTTCCGCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     216068 52 -    811265 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----ATTCCACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244506 52 -    350446 AATGCCCCAAGTCAACCA-GGGGGAAAA-CCCCAAATAATGAAACC-----GTTCCACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       395979 52 +   1230721 AATGCCCCAAGTCAACCA-GGGGAAAAA-CCCCAAATAATGAAACC-----ATTCAACA
i colAng1.NW_012115411v1       I 131 C 0
s saiBol1.JH378345             200263 58 -    465904 AATGTCCCACATCAACCACGGAGGAAAA-CCCCaaataataaaatactttttttaaaaa
i saiBol1.JH378345             C 0 I 746
e canFam3.chrX                 361806 3406 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=721986.000000
s hg38.chrX_KI270880v1_alt     236303 163 +    284869 AAAAATAGTCGTTCGA--TTTTTTTTTCTTTCCCCCGTAACGTCGTTAGTAG----------CCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAGCTGTTCTCT------------------GTT------TCTTTTTTTTTTCATACCGACCGTGGTAGCCAGGCACCTGTC
s panTro5.chrX                 420147 160 + 155549662 AAA--TACTCGTTCGA--TTTTTTTTCCTTTCCCCCGTAACCTCGTTAGTAA----------CCCCATGGACTTGAGGTTGCCTTCGGCCAGAAGTTACGTTTCTCATTAATATACATCAGCTGTTCTCT------------------GTT------TCTTTTTTTTT-CATACCGACCGTGGTAGCCAGGCACCTGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150140 161 -    177848 AAA-ATACTCGTTCGA--TTTTTTTTCCTTTCCCCCGTAACCTCGTTAGTAA----------CCCCATGGACTTGAGGTTGCCTTCGGCCAGAAGTTACGTTTCTCATTAATATACATCAGCTGTTCTCT------------------GTT------TCTTTTTTTTT-CATACCGACCGTGGTAGCCAGGCACCTGTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311296 161 +    417917 AAA-ATACTCGTTCGA--TTTTTTTTCCTTTCCCCCGTAACCTCGTTAGTAA-----------CCCATGGACAGGAGGTTGCCTTGGGCCAGAAGTTATGTTTCTCATTAATATACATGAGCTGTTCTCT------------------GTT------TCTTTTTTTTTTCATACCGACCGTGGTAGCCAGGCACCTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   3409 188 -     38397 AAAAATACTGGTTCGA--TTTTTTTTTCTTTCCCCCATAACCTCGTTAGTAGAGGCCCACG-CCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTtctcg--ctctctctctctctctctc------tctTTTTTTTTTCATAGCAACTGTGGTTGCCGGGCGCctctc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     3397 188 +     34961 AAAAATACTGGTTCGA--TTTTTTTTTCTTTCCCCCATAACCTCGTTAGTAGAGGCCCACG-CCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTGACGTTTCTCATTAATATACATCAACTGTtctcg--ctctctctctctctctctc------tctTTTTTTTTTCATAGCAACTGTGGTTGCCGGGCGCctctc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       407981 188 +  25972781 AAAAATACTGGTTCGA--TTTTTTTTTCTTTCCCCCATAACCTCGTTAGTAGAGGCCCACG-CCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTtctcg--ctctctctctctctctctc------tctTTTTTTTTTCATAGCAACTGCGGTTGCCGGGCGCctctc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       274465 190 -   1025902 AAAAATACTGGTTCGA---TTTTTTTTCTTTCTCCCATAACCTCGTTAGTAGAGGCCCACGACCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTtctcgctctctctctctctctctctc------tctTTTTTTTTTCATAGCAACTGTGGTTGCCGGGCGCCTCTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     216120 195 -    811265 AAAAATACTGGTTCGA-TTTTTTTTTTCTTTCTCCCATAACCTCGTTAGTAGAGGCCCACA-CCCCATGGACTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTtctcg--cgctctctctctctcgctctGTTTTTTTTTTTTTTTTCATAGCAACTGTGGTTGCTGGGCGCCTCTC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244558 189 -    350446 AAAAATACTGGTTCGATTTTTTTTTTTCTTTCTCCCATAACCTCGTTAGTAGAGGCCCACGCCCCCATGGAGTTGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTtctcg--ctctctctctctctctctc--------tTTTTTTTTTCATAGCAACTGTGGTTGCCGGGCGCctctc
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396031 180 +   1230721 AAAAATACTGGTTCGATTTTTTTTTTTCTTTCTCCCATAACCTCGTTAGTAGAGGCCCACA-CCCCATGGACTGGAGGTTGCCTTGGGCCAGAAGTTACGTTTCTCATTAATATACATCAACTGTTCTCT--CTCTC---------CTCTC------T-TTTTTTTTTTCATAGCAACTGTGGTTGCCGGGCGCCTCTC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             201067 149 -    465904 aaaaaCGCGCCTTCGATCCGTTTCCTCCCTCCCCCCATAGTCTCCTTAGTAA----------CCCCAAGGAT-----GTCGCCTTCGGCCAGAACTTAGCTTCCTCATTAATCCCCATCAGCTGTTCCCT---------------------------TTTTTTTTTTTTTTTTCCCTCCGT--------AGCGTCTCTG
i saiBol1.JH378345             I 746 C 0
e canFam3.chrX                 361806 3406 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=1450840.000000
s hg38.chrX_KI270880v1_alt     236466 251 +    284869 CCCCTTTTGTTCCTCGATAGAGCGTGTCTGAACGTAAAAGAAAAATTGTCACTTCTCATTACGTGAAC-TAAGGGTACGAGAATTGATGGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAAATCTGTCTTCCCCTGACGTCTGAACCCCTGGCAGCT---GCTGGTGGC--AGGGTTTCCTGAAATGGGGA---GGTGGAGGGGGGCTAG--------CTGGATTAACTAATT
s panTro5.chrX                 420307 251 + 155549662 CCCCTTTTGTTCCTCGATAGAGCGTGTCTGAACGTAAAAGAAAAATTGTCACTTCTCATTACGTGAAC-TAAGGGTACGAGAATTGATGGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAAATCTGTCTTCCCCTGACGTCTGAACCCCTGGCAGCT---GCTGGTGGC--AGGGTTTCCTGAAATGGGGA---GGTGGAGGGGGGCTAG--------CTGGATTAGCTAATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150301 251 -    177848 CCCCTTTTGTTCCTCGATAGAGCGTGTCTGAACGTAAAAGAAAAATTGTCACTTCTCATTACGTGAAC-TAAGGGTACGAGAATTGATGGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAAATCTGTCTTCCCCTGACGTCTGAACCCCTGGCAGCT---GCTGGTGGC--AGGGTTTCCTGAAATGGGGA---GGTGGAGGGGGGCTAG--------CTGGATTAGCTAATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311457 250 +    417917 CCCCTTTTGTTCCTCGATAGAGCGTGTCTGAACGTAAAGAAAAATTGGTCACTTCTCATTACGTGAAC-TAAGGGTACGAGAATTGATGGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAAATCTGTCTTCCCCTGACGTCTGAA-CCCTGGCAGCT---GCTGGTGGC--AGGGTTTCCTGAAATGGGGA---GGTGGAGGGAGGCTAG--------CTGGATTAACTAATT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   3597 251 -     38397 ccccttttgttcctcgatagagcgtttgtgaatgtaaAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTAAGAGAATTGATAGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCAAACCCCTGGCAGCT---GCTGGTGGC--AGCGTTTCCTGAAATGGGGA---GGTAGACGGGGACTGG--------CTGGATTAACTAATT
i rheMac8.chrUn_NW_014831239v1 C 0 I 344
s macFas5.chrUn_AQIA01076778     3585 251 +     34961 ccccttttgttcctcgatagagcgtttgtgaatgtaaAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTAAGAGAATTGATAGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGC--AGCGTTTCCTGAAATGGGGA---GGTAGACGGGGACTGG--------CTGGATTAACTAATT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408169 251 +  25972781 ccccttttgttcctcgatagagcgtttgtgaatgtaaAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTAAGAGAATTGATAGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGC--AGCGTTTCCTGAAATGGGGA---GGTAGACGGGGACTGG--------CTGGATTAACTAATT
i macNem1.NW_012017243v1       C 0 I 109
s cerAty1.NW_012001098v1       274655 251 -   1025902 CCCCTTTTGTTCCTCGATAGAGCGTTTGTGAATGTAAAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTACGAGAATTGATAGGCCTTTCTACCTAATACTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGC--AGCGTTTCCTGAAATGGGGA---GGTAGACGGCGACTGG--------TTGGATTAACTAATT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     216315 253 -    811265 CCCCTTTTGTTCCTCGATAGAGCGTTTGTGAATGTAAAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTACGAGAATTGATAGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGCAGAGCGTTTCCTGAAATGGGGA---GGTAGAGGGGGACTGG--------CTGGATTAACTAATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244747 251 -    350446 ccccttttgttcctcgatagagcgtttgtgaatgtaaAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTACGAGAATTGATAGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAGATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGC--AGCGTTTCCTGAAATGGGGA---GGTAGACGGGGACTGG--------CTGGATTAACTAATT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396211 254 +   1230721 CCCCTTTTGTTCCTCGATAAAGCGTGTGTGAATGTAAAAGAACAAATGTCACTTCTCGTTACGCGAAC-TAACGGTACGAGAACTGATGGGCCTTTCTACCTAATGCTGTTATCCGAACCAGGTTTGTTTATTTAATGAACAAAATGTCACATCAAATCTCTCTTCCCCTGACGTCCGAACCCCTGGCAGCT---GCTGGTGGC--AGGGTTTCCTGAAATGGAGAGGTGGTGGAGGGGGACTGG--------CTGGATTAACTAATT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             201216 246 -    465904 CGTCTTTTGTTCTGAGCCGGAGCCTTTCTGGGTGCCGA-GAACCGTTGTCACTTCTCGTTACGCCGAC-TGAGGGT--------------GGCTTTCGACCTAACGCGGTTATCCGGGCCGGGTTTGTGGATTTAATGAACAACACGTCAGGTCCAATCTCCCTTCGCCCGACGTGTGAATCCCTGGCAGCTGCGGCTGGTGGC--AGAG-TCCCCGCAATCGGGA---GGTGGCCGGCGGCGGGGGCTTCCCTGGGATTCACTGATT
i saiBol1.JH378345             C 0 C 0
s canFam3.chrX                 365212 236 + 123869142 CCCTTTTTGTTCTCCCGTGCGGTCCTTATGAATCTAAG-GAACAATTGTCACTTCTCGTTACGGGAACATAAACCTACGAGAACTGATGGGGCTTTCTACCTAATGCTGTTACCCGAACCGGGTTTGTTTATTTAATGAACAAAACGTCACATCCCATCTCCCTTCTCCTGACGTCTGAGCCTCTGGCAGCT---GCTGGTGGC--AG-ATTTCTTGCGACAGGGG---TG----------------------CTGGATTAACTAATT
i canFam3.chrX                 I 3406 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=74100.000000
s hg38.chrX_KI270880v1_alt     236717 46 +    284869 TAATTTGCATGTGATTCAAAAGTTAAAGCAAAGACTCACACCTCCT
s panTro5.chrX                 420558 46 + 155549662 TAATTTGCATGTGATTCAAAAGTTAAAGCAAAGACTCACACCTCCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150552 46 -    177848 TAATTTGCATGTGATTCAAAAGTTAAAGCAAAGACTCACACCTCCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311707 46 +    417917 TAATTTGCATGTGATTCAAAAGTTAAAGCAAAGACTCACACCTCCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     3836 20 +     34961 --------------------------AGGAGAGACACACACCTCCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       274906 20 -   1025902 --------------------------AGGAGAGACACACACCTCCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     216568 20 -    811265 --------------------------AGGAGAGACACACACCTGCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       244998 20 -    350446 --------------------------AGGAGAGACACACATCTCCT
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396465 20 +   1230721 --------------------------AGGAGAGACACACACCTCCT
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             201462 46 -    465904 TCAGGGGCGTGGGAGTCAAAATTTAAAGGAAAGACACACAGCTCCT
i saiBol1.JH378345             C 0 I 1702
s canFam3.chrX                 365448 46 + 123869142 TAATTTGCATGTCGTGCAAAAGTAAAAGCCAACGCACGCGCCTCGT
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=29622.000000
s hg38.chrX_KI270880v1_alt     236763 8 +    284869 CTGACGGA
s panTro5.chrX                 420604 8 + 155549662 CTGATGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150598 8 -    177848 CTGATGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311753 8 +    417917 CTGATGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     3856 8 +     34961 CTGATGGA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       274926 8 -   1025902 CTGATGGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     216588 8 -    811265 CTGATGGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       245018 8 -    350446 CTGATGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396485 8 +   1230721 CTGATGGA
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 365494 8 + 123869142 CAGAGGGA
i canFam3.chrX                 C 0 I 172
e saiBol1.JH378345             201508 1702 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=486915.000000
s hg38.chrX_KI270880v1_alt     236771 193 +    284869 ACAAATTCTC------------------------------------TTATTATTATTACTATTG------------------------------------------------tttt-ttttttttcagatggagacttcctctgtcccccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcttcccaagtagctgggatgacaggttcctgccaccatgcctgggtaatttt
s panTro5.chrX                 420612 191 + 155549662 ACAAATTCTC------------------------------------TTATTATCATTACTATTG------------------------------------------------tttt-tttttt--cagatggagacttcctctgtcccccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcttcccaagtagctgggatgacaggtgcctgccaccatgcctgggtaatttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150606 190 -    177848 ACAAATTCTC------------------------------------TTATTATCATTACTATTG------------------------------------------------tttt-ttttt---cagatggagacttcctctgtcccccaggctggagtgcagtggtgcaatctcggctcactgcaacctcggcctcccgggttcaagcgattctcctgcctcagcttcccaagtagctgggatgacaggtgcctgccaccatgcctgggtaatttt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311761 193 +    417917 ACAAATTCTC------------------------------------TTATTATTATTACTAttg------------------------------------------------tttt-ttttttttcagatggagactcgctctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctccacctcccgggttcaagagattctcctgcctcatcctcccaagtagctgggatgacaggtgcctgccaccatgcctgggtaatttt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     3864 272 +     34961 ACttattattattactgttattattattattactgttattataatattattattattactgtttattataataataatattatattattattattaattattattattaCTGtttt-ttttt---cagatggaatcttcctctgtc-cccagcctggagtgcagtgtcaccatct-ggctcactgcagcctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtcactgagatgacaggtgccggtcaccacgcccggctaatttt
i macFas5.chrUn_AQIA01076778   C 0 I 2
s cerAty1.NW_012001098v1       274934 189 -   1025902 ACAAATTCTC------------------------------------TTATTATTATTACTGttt------------------------------------------------tttt-ttttt---cagatggaatcttcctctgcc-cccaggctggagtgcagtgtcaccatctcggctcactgcagcctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtacctgggatgacaggtgccggtcaccatgcccggctaatttt
i cerAty1.NW_012001098v1       C 0 I 49
s chlSab2.chrUn_KE147541v1     216596 188 -    811265 ACAAATTCTC------------------------------------TTATTATTATTACTGGtt------------------------------------------------tt---ttttt---cagatggaatcttcctctgtcgcccaggctggagtgtggtgtcaccatctcggctcactgcaacctccgcctcccgagttcaagcgattctcctgcctcagcctccccagtagctgggatgacaggtgcccgccaccacacctggctaatttt
i chlSab2.chrUn_KE147541v1     C 0 I 380
s manLeu1.NW_012108508v1       245026 190 -    350446 ACAAATTCTC------------------------------------TTATTATTATTACTGttt------------------------------------------------ttttcttttt---cagatggaatcttcctctgcc-cccaggctggagtgcagtgtcaccatctcggctcaccgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtacctgggatgacagatgccggtcaccacgcccggctaatttt
i manLeu1.NW_012108508v1       C 0 I 49
s colAng1.NW_012115411v1       396493 185 +   1230721 ACAAATTCTC------------------------------------TTATTATTATTACTG---------------------------------------------------tt---ttttt---cagatggaatcttcctctgtcgcccaggctggagtgcagtgtcaccatctcggctcactgcagcctctgcctcccgggttcaagcgattctcctgcctcagcctcccgtgtagctgggatgacaggtgcgcaccaccatgcccggctaatttt
i colAng1.NW_012115411v1       C 0 I 51
e canFam3.chrX                 365502 172 + 123869142 I
e saiBol1.JH378345             201508 1702 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=22843.000000
s hg38.chrX_KI270880v1_alt     236964 35 +    284869 ggaattt-----ttagta-----gagacggggtttcaccatgttg
s panTro5.chrX                 420803 35 + 155549662 ggaattt-----ttagta-----cagacggggtttcaccgtgttg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150796 35 -    177848 ggaattt-----ttagta-----gagacggggtttcaccgtgttg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       311954 35 +    417917 ggaattt-----ttagta-----gagacggggtttcaccatgttg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     4138 45 +     34961 TGAATTTAACTATTATTAtttttgagacggagtctcgctctgttg
i macFas5.chrUn_AQIA01076778   I 2 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e manLeu1.NW_012108508v1       245216 49 -    350446 I
e saiBol1.JH378345             201508 1702 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e cerAty1.NW_012001098v1       275123 49 -   1025902 I
e colAng1.NW_012115411v1       396678 51 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=24696.000000
s hg38.chrX_KI270880v1_alt     236999 46 +    284869 gtcagg-ctggtctcgaactcctgatctcaggctggagtgcagtggc
s panTro5.chrX                 420838 46 + 155549662 gtcagg-ctggtctcgaactcctgatctcaggctggagtgcagtggc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 150831 47 -    177848 gtcaggtctggtctcgaactcctgatctcaggCTGGAGTGCAGTGGC
i panPan2.chrUn_NW_014024190v1 C 0 M 538
s gorGor5.CYUI01015925v1       311989 46 +    417917 gtcagg-cttgtctcgaactcctgatctcaggctggagtgcagtggc
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e manLeu1.NW_012108508v1       245216 49 -    350446 I
e saiBol1.JH378345             201508 1702 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e cerAty1.NW_012001098v1       275123 49 -   1025902 I
e colAng1.NW_012115411v1       396678 51 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I
e macFas5.chrUn_AQIA01076778     4183  0 +     34961 C

a score=44203.000000
s hg38.chrX_KI270880v1_alt     237045 167 +    284869 atgatgtcgactcaccgcaatctctgcctcccaggttgaatcggttctcctgcctcagcctcccaagtagctgggattacaggcacccgccaccaggccaggcaaatgcttgtatttttagtagagac---gtttcaccgtgttggtcaggctggtctcgaactcctgac
s panTro5.chrX                 420884 170 + 155549662 gtgatgtcgactcactgcaacctctgcctcccaggttgaatcgattctcctgcctcagcctcccaagtagctgggattacaggcacccgccaccaggccaggcaaatgtttgtatttttactagagacagggtttcaccatgttggtcaggctggtctcgaactcctgaT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       312035 170 +    417917 gtgatgtcgactcactgcaacctctgcctcccaggttgaattggttctcctgcctcagcctcccaagtagctgggattacaggcacccgccaccaggccaggcaaatgtttgtatttttagtagagatggggtttcaccgtgttggtcaggctggtctcaaactcctgac
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e manLeu1.NW_012108508v1       245216  49 -    350446 I
e saiBol1.JH378345             201508 1702 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e cerAty1.NW_012001098v1       275123  49 -   1025902 I
e colAng1.NW_012115411v1       396678  51 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I
e macFas5.chrUn_AQIA01076778     4183   0 +     34961 C
e panPan2.chrUn_NW_014024190v1 150878 538 -    177848 M

a score=1187.000000
s hg38.chrX_KI270880v1_alt     237212 2 +    284869 ct
s panTro5.chrX                 421054 2 + 155549662 ct
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       312205 2 +    417917 ct
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     4183 2 +     34961 cc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s saiBol1.JH378345             262981 2 +    465904 cc
i saiBol1.JH378345             I 3357 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e manLeu1.NW_012108508v1       245216 49 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e cerAty1.NW_012001098v1       275123 49 -   1025902 I
e colAng1.NW_012115411v1       396678 51 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   3848 344 -     38397 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I
e panPan2.chrUn_NW_014024190v1 150878 538 -    177848 M

a score=5348.000000
s hg38.chrX_KI270880v1_alt     237214 2 +    284869 ca
s panTro5.chrX                 421056 2 + 155549662 ca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       312207 2 +    417917 ca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4192 2 -     38397 ca
i rheMac8.chrUn_NW_014831239v1 I 344 C 0
s macFas5.chrUn_AQIA01076778     4185 2 +     34961 ca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       275172 2 -   1025902 ca
i cerAty1.NW_012001098v1       I 49 C 0
s manLeu1.NW_012108508v1       245265 2 -    350446 ca
i manLeu1.NW_012108508v1       I 49 C 0
s saiBol1.JH378345             262983 2 +    465904 ca
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e colAng1.NW_012115411v1       396678 51 +   1230721 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I
e panPan2.chrUn_NW_014024190v1 150878 538 -    177848 M

a score=53870.000000
s hg38.chrX_KI270880v1_alt     237216 17 +    284869 ggctggagtgcagtggc
s panTro5.chrX                 421058 17 + 155549662 ggctggagtgcagtggc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       312209 17 +    417917 ggttggagtgcagtggc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4194 17 -     38397 ggctggagtgcagtggt
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4187 17 +     34961 ggctggagtgcagtggt
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       275174 17 -   1025902 ggctggagtgcagtggt
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       245267 17 -    350446 ggctggagtgcagtggt
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396729 17 +   1230721 ggctggagtgcagtggt
i colAng1.NW_012115411v1       I 51 C 0
s saiBol1.JH378345             262985 17 +    465904 ggctggagtgcggcggc
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I
e panPan2.chrUn_NW_014024190v1 150878 538 -    177848 M

a score=1222644.000000
s hg38.chrX_KI270880v1_alt     237233 418 +    284869 gtgatctcaactcactgcaacctctgcctcccaggttgaatcgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccaggccagg-caaatgtttgta-tttttagtagagacagggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatcctcccgccttggcctcccaaagtgcta-gggtgacaggcgtgaaccaccatgccAAGCTGTTATTATTATTTTTTAAAGCACATGTC--CAAGGGCCATTGTATGGTGAGATTCCAGATGTTGGATGGCAAGAAGGAGGAGTCCTGACCCGGATTGGTCAACATCAGGGAAACCACAGCCCGTTTAGATG-GAAGATTGAAAGTTCCGTCATGCCGTGTGAGCTTCCCACAACCGAGATAC
s panTro5.chrX                 421075 418 + 155549662 gtgatgtcgactcactgcaacctctgcctcccagattcaagcgattctcctgcctcagcttcccaagtagctgggattacaggcacctgccaccaggccagg-caaatgtttgta-tttttagtagagacagggtttcaccgtgttggtcaggctggtctcgaactcctgacctcaggtgatcctcccgccttggcctcccaaagtgcta-gggtgacaggcgtgagccaccgtgccAAGCTGTCATTATTATTTTTTAAAGCACACGTC--CAAGGTCCATTGTATGGTGAGATTCCAGATGTTGGATGGCAAGGAGGAGGCGTCCTGACCTGGATTGGTCAACATCAGGGAAACCGCAGCCCGTTTAGATG-GAAGATTTAAAGTTCCGTCATACCGTGCGAGTTTCCCGCAACCGAGATAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 151419 418 -    177848 gtgatctcaactcactgcaacctctgcctcccaggttgaatcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccaggccagg-caaatgcttgta-tttttagtagagacggggtttcactgtgttggtcaggctggtctcgaactcctgacctcaggtgatcctcccgccttggcctcccaaagtgcta-gggtgacaggcatgagccaccgtgccAAGCTGTTATTATTATTTTTTAAAGCACACGTC--CAAGGTCCATTGTATGGTGAGATTCCAGATGTTGGATGGCAAGGAGGAGGCGTCCTGACCCGGATTGGTCAACATCAGGGAAACCGCAGCCCATTTAGATG-GAAGATTGAAAGTTCCGTCATGCGGTGCGAGTTTCCCGCAACCAAGATAC
i panPan2.chrUn_NW_014024190v1 M 538 C 0
s gorGor5.CYUI01015925v1       312226 421 +    417917 gtgatctcaactcactgaaacctctgcctcccaggttgaatcaattctcctgcctcagcctcccaaatagctgggattacaggtgcctgccaccaggccagaccaaatgtttgtattttttagtagagacagggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatcctcctaccttggcctcccaaagtgctaggggtgacaggcgtgagccgccatgccAAGCTGTTATTATTATTTTTTAAAGCACACGTC--CAAGGGCCATTGTATGGTGAGATTCCAGATGTTGGATGGCAAGGAGGAGGTGTCCTGACCCGGACTGGTCAACATCAGGGAAACCGCAGCCCGTTTAGATG-GAAGATTTAAAGTTCCGTCATGCCGTGCGAGCTTCCCGCAACCGAGATAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4211 409 -     38397 gtgatctcagctgtctacaacctctgcctcc-gggttcaagcgattctcctgcctcagcttcccaagtacctgggattacaggtgcccgccaccacacctgg-ctaatttttgtg-tttttaatagagatagagtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgcctcggcctcccaaagtgctg-gggtgacaggcatgagacaccgcgccctgccGTTATTACTACTTTTTAAAGCAGAGTTT--CAATGGCTATGGTATG----GATTCCAGGTGTCGGATGGTAAGGAGGAGGCGTCCTGACCCGGGTTGGTCCACATCAGGGATGCAAGA-----TTTAGATGCCAAGATTTAAAGCTTCAACAGGCCATGCAGGCTTCCCGCAACCGAGATAC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4204 409 +     34961 gcgatctcagctgtctacaacctctgcctcc-gggttcaagcgattctcctgcctcagcttcccaagtacctgggattacaggtgcccgccaccacacctgg-ctaatttttgtg-tttttaatagagatagagtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgcctcggcctcccaaagtgctg-gggtgacaggcatgagacaccgtgccctgccGTTATTACTACTTTTTAAAGCAGAATTT--CAATGGCTATGGTATG----GATTCCAGGTGTCGGATGGTAAGGAGGAGGCGTCCTGACCCGGGTTGGTCCACATCAGGGATGCAAGA-----TTTAGATGCCAAGATTTAAAGCTTCAACAGGCCATGCAGGCTTCCCGCAACCGAGATAC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       275191 410 -   1025902 gagatctcagctgtctacaacctctgcctcctgggttcaagcgattctcctgcctcagcttcccaagtacctgggattacaggtgcccgcccccacacctgg-ctaatttttgtg-tttttaatagagatagagtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgcctcggcctcccaaagtgctg-gggtgacaggcatgagacaccgtgccctgccGTTATTATTACTTTTTAAAGCAGAATTT--CAACGGCTATGGTATG----GATTCCAGGTGTCGGATGGTAAGGAGGAGGCGTCCTGACCCGGGTTGGTCCACATCAGGGATGCAAGA-----TTTAGATGCCAAGATTTAAAGCTTCAACAGGCCATGCAGGCTTCCCGCAACCGAGATAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       245284 410 -    350446 gcaatctcagctgtctacaacctctgcctcctaggttcaagcgattctcctgcctcagcttcccaagtacctgggattacaggtgcccgccaccacacctgg-ctaatttttgtg-tttttaatagagatagagtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgcctcggcctcccaaagtgctg-gggtgacaggcatgagacaccgtgccctgccGTTATTACTACTTTTTAAAGCAGAATTT--CAACGGCTATGGTATG----GATTCCAGGTGTCGAATGGTAAGGAGGAGGCATCCTGACCCAGGTTGGTCCACATCAGGGATGCAAGA-----TTTAGATGCCAAGATTTAAAGCTTCAACAGGCCATGCAGGCTTCCCGCAACCGAGATAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       396746 414 +   1230721 gcgatcccagctctctacaacctctgcctcccaggttcaagcgattctcctgcctcaccttcccgagtacctgggattacaggcgtccaccaccacacctgg-ataatttttgta-tttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgcctgcctcggcctcccaaagtactg-ggatgacaggtgtgagacaccgcacccTGTCGCTATTGCTACTTTTTAAAGCAGAAGTT--CAACGGCCATGGTATGGTGAGATTCCAGGTGTCGGATGGTAAGGAGGAGGCGTCCTGACCCGGGCTGGTCCACATCAGGGATGCAAGA-----TTTAGATGCCAAGATTTAAAGCTCCAACAGGCCATGCAGGCTTCCCGCAACCGACATAC
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             263002 332 +    465904 gcgatctcggctcactgcg--------------------------------gcctcagcctcccaggtagctgggatggcaggtgcgcacgtccacgcctgg-ctactttttgta-tttttagtagacacggggtttctccatgttggccaggtgggtctcgaactcctgacctcaggggatccacctgcctcggcgtcccgaagggctg-ggatgacaggcatgagtcaccacgcctggcAGTTAGGATTATTTTTTAAAACACATGTTTCCAAAGCCCATTGTGCGGTGAGATTCCAGGTGTTTGAGAGCAAGGAGGTCTGGGTCAG-TCTGGGATAGTCGTGGCCTGAGATGCCAGG-----TTCACACG---------------------------------------------------
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 365502 172 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=601461.000000
s hg38.chrX_KI270880v1_alt     237651 185 +    284869 AGATACATAATCTCCCTGGGAACGTATCAAACTGTCGGGGCACCAGGAG-CCTCTGCCTTCTCTTCGGCTGCCAATTTCA-GGGACGAGGACCGCAGCCA-GGTCAGAAGCACGGTTTGCAGGGGTGACAGCTTGTCACTTGCAGAGTTACGCAGT-CTAAGCCACTTCATAAATGCAAGGTGCCG-ACG
s panTro5.chrX                 421493 185 + 155549662 AGATACATAATCTCCCTGGGAACGTATCAAACTGTCGGGGCACCAGGAG-CCTCTGCCTTCTCTTCGGCTGCCAATTTCA-GGGACGAGGACCACAGCCA-GGTCAGAAGCACGGTTTGCAGGGGTGACAGCTTGTCACTTGCAGAGTTACGCAGT-CTAAGCCACTTCATAAATGCAAGGTGCCG-ACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 151837 185 -    177848 AGATACATAATCTCCCTGGGAACGTATCAAACTGTCGGGGCACCAGGAG-CCTCTGCCTTCTCTTCGGCTGCCAATTTCA-GGGACGAGGACCACAGCCA-GGTCAGAAGCACGGTTTGCAGGGGTGACAGCTTGTCACTTGCAGAGTTATGCAGT-CTAAGCCACTTCATAAATGCAAGGTGCCG-ACG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       312647 185 +    417917 AGATACATAATCTCCCTGGGAACGTATCAAACTGTCGGGGCACCAGGAGCCCTCTGCCTTCTCTTCGGC-GCCAATTTCA-GGGACGAGGACCGCAGCCA-GGTCAGAAGCACGGTTTGCAGGGGTGACAGCTTGTCACTTGCAGAGTTACGCAGT-CTAAGCCACTTCATAAATGCAAGGTGCCG-ACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4620 181 -     38397 AGATACGTAATCTCCCTGGGAACGTATCAAACGGTCGGGGCACCAGGAG-------TCTTCTCATCGGCTGCCAATTTCAGGGGACGAGGACCGCAGCCA-GGTCAGAAGCGTGCTTTGCCCAGGTGACAGCTTGTCACTTGCAGAGTTACGCCGT-CTAAGCCACTTCATAATTGCAATGTGCCCCACG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4613 181 +     34961 AGATACGTAATCTCCCTGGGAACGTATCAAACGGTCGGGGCACCAGGAG-------TCTTCTCGTCCGCTGCCAATTTCAGGGGACGAGGACCGCAGCCA-GGTCAGAAGCGTGCTTTGCCGAGGTGACAGCTTGTCACTTGCAGAGTTACGCCGT-CTAAGCCACTTCATAATTGCAATGTGCCCCACG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       275601 181 -   1025902 AGATACGTAATCTCCCTGGGAACGTATCAAACGGTCGGGGCACCAGGAG-------CCTTCTCGTCGGCTGCCAATTTCAGGGGACGAGGACCGCAGCCA-GGTCAGAAGCGTGCTTTGCCGAGGTGACAGCTTGTCACTTGCAGAGTTATGCCGT-CTAAGCCACTTCATAATTGCAATGTGCCCCATG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       245694 181 -    350446 AGATACGTAATCTCCCTGGGAACGTATCAAACGGTCGGGGCACCAGGAG-------TCTTCTCGTCGGCTGCCAATTTCAGGGGACGAGGACCGCAGCCA-GGTCAGAAGCGTGCTTTGCTGAGGTGACGGCTTGTCACTTGCAGAGTTACGCCGT-CTAAGCCACTTCATAATTGCAATGTGCCGCACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397160 181 +   1230721 AGATACATAATCTCCCTGGGAACGTATCAAACTGTCGGGGCACCAGGAG-------CCTTCTCATCGGCTGCCAATTTCAGGGGACGAGGACCGTAGCCA-GGTCAGAAGCACGCTTTGCCGGGGTGACAGCTTGTCACTTGCAGAGTTACGCCGT-CTAAGCCACTTCATAATTGCAAAGCGCCCCACG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             263334 130 +    465904 ---------------CTGGGAAACCATCAGGCTGTCGGAGCACCTGCGG-----------------------------------ACAAGGACCACAGACA-CGGGATGTGCAGCGTTGGCAGGCGTGACAGCTGTTCCCTTGCAG-GCTGCCCGCC-CTAAGCGACCTCA------CCGCGTGCCC-TCG
i saiBol1.JH378345             C 0 C 0
s canFam3.chrX                 365674 186 + 123869142 AGATACATAAGTGCCCCAGGAGCGCATCAGACTGAAGGCGGGCCAGAAA-GCTTC-CCTTCTCATGCCGTGCCAACTTCG-CGGGCGAGGACGGTAGCCAGGGTCGGAAACGCGCTTTGCACAAGTGACGACCTGTCACTTAGCGAGCTACCCGGCGCGGGGCCACTTTATGATTACAAAGGGCGC-ACG
i canFam3.chrX                 I 172 I 113
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=300477.000000
s hg38.chrX_KI270880v1_alt     237836 101 +    284869 TGTTGGAAAGGCTGGAGTCCCGGGGTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCTGGGGGAACAGCCCACGCGTATCGGATGCCAGGTCTCCGCCC
s panTro5.chrX                 421678 101 + 155549662 TGTTGGAAAGGCTGGAGTCCCGGGGTGGAAACACGTATGTTG--GGGGCCAGGTGTG------------------------------------------TCCCTGGGGGAACAGCCCAGGCGTGTCGGATGCCAGGTCTCCGCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152022 101 -    177848 TGTTGGAAAGGCTGGAGTCCCGGGGTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCTGGGGGAACAGCCCATGCGTGTCGGATATCAGGTCTCTGCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       312832 100 +    417917 TGTTGGAAAGGCTGGAGTCCCGGGGTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCTGGGGGAACAGCACAAGCGTGTCGGATGCCAGGTCTC-GCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4801 101 -     38397 TGTCGGAAAGGCTGGAGTCTAGGGCTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCCGGGGGAACAGCACAGGCGTGTCAGGTGCCAGGTCTCCGCTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4794 101 +     34961 TGTCGGAAAGGCTGGAGTCTAGGGCTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCCGGGGGAACAGCACAGGCGTGTCAGGTGCCAGGTCTCCGCTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       275782 101 -   1025902 TGTCGGAAAGGCTGGAGTCTCGGGCTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCCGGGGGAACAGCACAGGCGTGTCAGGTGCCAGGTCTCCGCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       245875 101 -    350446 TGTGGGAAAGGCTGGAGTCTTGGGCTGGAAACACGTATGTCG--GGGGCCAGGTGTG------------------------------------------TCCCCGGGGGAACAGCACAGGCGTGTCAGGTGCCAGGTCTCCGCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397341  94 +   1230721 TGTCGGAAAGGCTGGAGTCTCCGGCTGGAAACA-------CG--GGGGCCAGGTGTG------------------------------------------TCCCTGGGGGAACTGCACAGGCGTGTCAGGTGCCAGGTCTCCGCTG
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             263464 145 +    465904 TGCGTGCAAGGCCTGAGTGTCGGGGTGCAATCCCGCGTGCTGCTGGGTCCTGCTGTGGAAGGTTAAGGCAATCTTAGCAAGAAAAGAGAGCAATTTCTTTTTTTGGGGTAAGAAAGCAAGCGGGTGGGGTTTCAGGTGTCCCCGC
i saiBol1.JH378345             C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408420 109 +  25972781 I

a score=274018.000000
s hg38.chrX_KI270880v1_alt     237937 66 +    284869 ACCCCGGAGCCAGC-TCCGCTTGGACTGGCCAGCTTGGGTCTGCTCTGGAGAGGGGACGTATGGAGA
s panTro5.chrX                 421779 66 + 155549662 ACCCCGGAGCCAGT-TCCGCTTGGAGTGGCCACCTTGGGTCTGCTCTGGAGAGGGGACGAATGGAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152123 66 -    177848 ACCCCGGAGCCAGC-TCCGCTTGGACTGGCCACCTTGGGTCTGCTCTGGAGAGGGGACGAATGGAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       312932 63 +    417917 A-CCCGGAGCCAGC-TCCGCTTGGACTGGCCACCTTGGGTCTGCTCTGGAGAGGGGATGTATGGA--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4902 66 -     38397 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCGCCTTGGGTCTGCTGTGGAGAGCGGACGTATGGAGA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4895 66 +     34961 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCGCCTTGGGTCTGCTGTGGAGAGCGGACGTATGGAGA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408529 66 +  25972781 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCGCCTTGGGTCTGCTGTGGAGAGCGGACGTATGGAGA
i macNem1.NW_012017243v1       I 109 C 0
s cerAty1.NW_012001098v1       275883 66 -   1025902 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCGCCTTGGGTCTGTTCTGGAGAGCGGACATATGGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       245976 66 -    350446 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCGCCTTGGGTCTGTTCTGGAGAGCGGACGTATGGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397435 66 +   1230721 ACCCCAGAGCCAGC-CCCGCTTGGACTGGCCACCTTGGGTCTGCCCTGGAGGGGGGGCGTATGGAGA
i colAng1.NW_012115411v1       C 0 C 0
s saiBol1.JH378345             263609 67 +    465904 ACCCCAGAGACAGTGCCCCCTTGCACTGCTCACCTTGGGTGTCCTCTGGAGAGGGGACATATCAAGA
i saiBol1.JH378345             C 0 I 2735
e canFam3.chrX                 365860 113 + 123869142 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=3276.000000
s hg38.chrX_KI270880v1_alt     238003 1 +    284869 A
s panTro5.chrX                 421845 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152189 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 I 29
s rheMac8.chrUn_NW_014831239v1   4968 1 -     38397 A
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4961 1 +     34961 A
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408595 1 +  25972781 A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       275949 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246042 1 -    350446 A
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397501 1 +   1230721 A
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e gorGor5.CYUI01015925v1       312995 0 +    417917 C

a score=59929.000000
s hg38.chrX_KI270880v1_alt     238004 20 +    284869 GCTGCTCTGGAGAGGGGATA
s panTro5.chrX                 421846 20 + 155549662 GCTGCTCTGGAGAGGGGACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152219 20 -    177848 GCTGCTCTGGAGAGGGGACG
i panPan2.chrUn_NW_014024190v1 I 29 C 0
s rheMac8.chrUn_NW_014831239v1   4969 20 -     38397 GCTGCACTGGAGAGGGGACA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4962 20 +     34961 GCTGCACTGGAGAGGGGACA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408596 20 +  25972781 GCTGCACTGGAGAGGGGACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       275950 20 -   1025902 GCTGCACTGGAGAGGGGACA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246043 20 -    350446 GCTGCACTGGAGAGGGGACA
i manLeu1.NW_012108508v1       C 0 I 118
s colAng1.NW_012115411v1       397502 20 +   1230721 GGCGCTCTGGAGAGGGGACA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e gorGor5.CYUI01015925v1       312995  0 +    417917 C

a score=-10105.000000
s hg38.chrX_KI270880v1_alt     238024 9 +    284869 TA-------TGGGGAG
s panTro5.chrX                 421866 9 + 155549662 TA-------TGGGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152239 9 -    177848 TA-------TGGGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       312995 3 +    417917 -------------GAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4989 2 -     38397 TA--------------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4982 2 +     34961 TA--------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408616 2 +  25972781 TA--------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       275970 9 -   1025902 TATGGAGAG-------
i cerAty1.NW_012001098v1       C 0 I 277
s colAng1.NW_012115411v1       397522 2 +   1230721 TA--------------
i colAng1.NW_012115411v1       C 0 I 7
e canFam3.chrX                 365860 113 + 123869142 I
e manLeu1.NW_012108508v1       246063 118 -    350446 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=47822.000000
s hg38.chrX_KI270880v1_alt     238033 22 +    284869 GCTGCTCTGGAGAGGGGATGTA
s panTro5.chrX                 421875 22 + 155549662 GCTGCTCTGGAGAGGGGACGCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152248 22 -    177848 GCTGGTCTGGAGAGGGGACGTA
i panPan2.chrUn_NW_014024190v1 C 0 T 73
s gorGor5.CYUI01015925v1       312998 22 +    417917 GCTGCTCTGGAGAGGGGATGTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   4991 15 -     38397 -------TGGAGAAGGGACGTA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4984 15 +     34961 -------TGGAGAAGGGACGTA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408618 15 +  25972781 -------TGGAGAAGGGACGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276256 22 -   1025902 GCTGCACTGGAGAGGGGACGTA
i cerAty1.NW_012001098v1       I 277 C 0
s colAng1.NW_012115411v1       397531 22 +   1230721 GGTGCACTGGAGAGGGGATGTA
i colAng1.NW_012115411v1       I 7 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e manLeu1.NW_012108508v1       246063 118 -    350446 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=23543.000000
s hg38.chrX_KI270880v1_alt     238055 9 +    284869 T-GGAGAGGG
s panTro5.chrX                 421897 9 + 155549662 TCGGAGA-GG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152197 9 -    177848 -TGGAGAGGG
i panPan2.chrUn_NW_014024190v1 T 73 C 0
s gorGor5.CYUI01015925v1       313020 9 +    417917 -TGGAGAGCG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5006 9 -     38397 -TGGAGAGGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     4999 9 +     34961 -TGGAGAGGG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408633 9 +  25972781 -TGGAGAGGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276278 9 -   1025902 -TGGAGAGGG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246181 9 -    350446 -TGGAGAGGG
i manLeu1.NW_012108508v1       I 118 C 0
s colAng1.NW_012115411v1       397553 9 +   1230721 -TGGAGCAGG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=32162.000000
s hg38.chrX_KI270880v1_alt     238064 15 +    284869 GACGTATGGAGAAGC
s panTro5.chrX                 421906 15 + 155549662 GACGCATGCGAGAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152206 15 -    177848 GACGTATGGGGAGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313029 15 +    417917 GATATATGGAGAAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5015 15 -     38397 GACGTACGGAGCAGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5008 15 +     34961 GACGTACGGAGCAGG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408642 15 +  25972781 GACGTACGGAGCAGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276287 15 -   1025902 GACGTATGGAGAAGG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246190 15 -    350446 GACGTATGGAGAAGC
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e colAng1.NW_012115411v1       397562  0 +   1230721 C

a score=72491.000000
s hg38.chrX_KI270880v1_alt     238079 20 +    284869 TGCTCTGGAGA-GGGGACGTA
s panTro5.chrX                 421921 21 + 155549662 TGCTCTGGAGATGGTGAGGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152221 20 -    177848 TGCTCTGGAGA-GGGGACGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313044 20 +    417917 TGCTCTGGAGA-GGGGACGTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5030 20 -     38397 TGCACTGGAGA-GGGGACGTA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5023 20 +     34961 TGCACTGGAGA-GGGGACGTA
i macFas5.chrUn_AQIA01076778   C 0 I 13
s macNem1.NW_012017243v1       408657 20 +  25972781 TGCACTGGAGA-GGGGACGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276302 20 -   1025902 CGCTCTGGAGA-GGGGACGTA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246205 20 -    350446 TGCACTGGAGA-GGGGACGTA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397562 20 +   1230721 TGCACTGGAGA-GGGGACGTA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=18337.000000
s hg38.chrX_KI270880v1_alt     238099 12 +    284869 TGGGGAGGC-TGC
s panTro5.chrX                 421942 13 + 155549662 TGGAGAGGCTTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152241 12 -    177848 TGGGGAGGC-TGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313064 12 +    417917 TGGAGAAGC-TGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5050 12 -     38397 TGGAGAGGG-GAC
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macNem1.NW_012017243v1       408677 12 +  25972781 TGGAGCAGG-TTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276322 12 -   1025902 TGGAGAAGG-CGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246225 12 -    350446 TGGAGCAGG-CGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397582 12 +   1230721 TGGAGCAGG-TGC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macFas5.chrUn_AQIA01076778     5043 13 +     34961 I

a score=49822.000000
s hg38.chrX_KI270880v1_alt     238111 17 +    284869 TC--------------TGGAGAGGGGACATA
s panTro5.chrX                 421955 17 + 155549662 TC--------------TGGAGAGCGGATATA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152253 17 -    177848 TC--------------TGGAGAGGGGACGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313076 31 +    417917 TCTGGAGAGGGATGTATGGAGAGGGGATATA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5063 17 -     38397 TA--------------TGGAGAGGGGACGTA
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778     5056 17 +     34961 TA--------------TGGAGAGGGGACGTA
i macFas5.chrUn_AQIA01076778   I 13 C 0
s macNem1.NW_012017243v1       408689 17 +  25972781 AC--------------TGGAGAGGCGACGTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276334 17 -   1025902 TC--------------TGGAGAGGGGACGTA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246237 17 -    350446 TC--------------TGGAGAGGGGACGTA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397594 17 +   1230721 AC--------------TGGAGAGGGGATGTA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=48629.000000
s hg38.chrX_KI270880v1_alt     238128  43 +    284869 TGGAGA----------------------------------------GGCTGCTCTGGAGAG-GGGATATA-TGGGGAG---------------------------GCTG-CTC
s panTro5.chrX                 421972  57 + 155549662 TGGAGA----------GAGGGGG-------------------GGGTGGCTGCTCTGGCGAGAGGGAAGTATTGGAGAG---------------------------GCTGCCTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152270  35 -    177848 TGGAGA----------------------------------------AGCTGCTATGGAGAG-AGGATGTA-TGGGGA------------------------------------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313107 110 +    417917 TGGAGAGCTGCTCTGGGAGGGGGACGTATGGAGAGGGGAAATGGAGAGGCGCTCTGGAGAG-GGGATATA-TGGGGAGGTGCTTGGAGAGGGGACGTATGGAGAAGCTG-CTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5080  43 -     38397 TGGAGC----------------------------------------AGGTGCACTGGAGAG-GGGACGTA-TGGAGAG---------------------------GGGA-CAT
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macFas5.chrUn_AQIA01076778     5073  43 +     34961 TGGAGC----------------------------------------AGGTGCACTGGAGAG-GGGACGTA-TGGAGAG---------------------------GGGA-CAT
i macFas5.chrUn_AQIA01076778   C 0 T 73
s cerAty1.NW_012001098v1       276351  43 -   1025902 TGGAGC----------------------------------------AGGTGCACTGGAGAG-GGGACATA-TGGAGAA---------------------------GGTG-CTC
i cerAty1.NW_012001098v1       C 0 I 15
s manLeu1.NW_012108508v1       246254  43 -    350446 TGGAGA----------------------------------------AGGTGCTCTGGAGAG-GGGACGTA-TGGAGAA---------------------------GGTG-CTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397611  43 +   1230721 TGGAGA----------------------------------------AGGAGCTCTGGGGAG-GGGACGTA-TGGAGAA---------------------------GACG-CTC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408706   0 +  25972781 C

a score=97263.000000
s hg38.chrX_KI270880v1_alt     238171 50 +    284869 TG----------------GAGAGGGGAC-ATATGGAGAGGCTGCTCTGGAGAGG-GC-ATG-TATGGAGA
s panTro5.chrX                 422029 47 + 155549662 TG------------------AAGGGGAT-TAATGGAGA----GCTCTGGAGAGGTGCTATGATATGGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152305 46 -    177848 --------------------GAGGGGAT-TTATGGAGAAGCTGCTCTGGAGAGA-GC-ATG-TATGGAGA
i panPan2.chrUn_NW_014024190v1 C 0 T 188
s gorGor5.CYUI01015925v1       313217 67 +    417917 GGAGAGAGGACGTATGGAGAGAGGGGACGTAATGGAGAAGCTGCTCTGGAGAGG-GG-ATG-TATGGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5124 50 -     38397 ----------------TGGAGAGGGGAC-GTATGGAGCAGGTGCACTGGAGAGA-GG-ACG-TATGGAGC
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778     5043 36 +     34961 ----------------TGGAGAGGGGAC-ATA--------------TGGAGAGG-GG-ACG-TATGGAGC
i macFas5.chrUn_AQIA01076778   T 73 C 0
s macNem1.NW_012017243v1       408706 50 +  25972781 ----------------TGGAGAAGGGAC-GTATGGAGCAGGTGCACTGGAGAGG-GG-ATG-TATGGAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276409 50 -   1025902 ----------------TGGAGAGGGGAC-GTATGGAGAAGGCGCTCTGGAGAGG-GG-ACA-TATGGAGC
i cerAty1.NW_012001098v1       I 15 C 0
s manLeu1.NW_012108508v1       246297 50 -    350446 ----------------TGGAGAGGGGAC-GTATGGAGAAGGCACACTGGAGAGG-GG-ACG-TATGGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397654 49 +   1230721 ----------------TGGAGAGGGG-T-GTATGGAGAGGATGCTCTGGAGAGG-GG-ACG-TATGGAGA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=35209.000000
s hg38.chrX_KI270880v1_alt     238221 17 +    284869 GGCTGCTCTGGAGAGGG
s panTro5.chrX                 422076 17 + 155549662 GGCTGCTCTGGATAGGG
i panTro5.chrX                 C 0 I 19
s gorGor5.CYUI01015925v1       313284  4 +    417917 -------------GGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5174 17 -     38397 AGGTGCACTGGAGAGGG
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macFas5.chrUn_AQIA01076778     5079 17 +     34961 AGGTGCACTGGAGAGGG
i macFas5.chrUn_AQIA01076778   C 0 I 1
s macNem1.NW_012017243v1       408756 17 +  25972781 AGGTGCACTGGAGAGGG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       276459 17 -   1025902 AGGTGCACTGGAGAGGG
i cerAty1.NW_012001098v1       C 0 I 1
s manLeu1.NW_012108508v1       246347 17 -    350446 AGGTGCTCTGGAGAGGG
i manLeu1.NW_012108508v1       C 0 I 117
s colAng1.NW_012115411v1       397703 17 +   1230721 AGGTGCACTGGAGAGGA
i colAng1.NW_012115411v1       C 0 I 1
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e panPan2.chrUn_NW_014024190v1 152351 188 -    177848 T

a score=5125.000000
s hg38.chrX_KI270880v1_alt     238238 14 +    284869 ACATA---------------CGGAGAAGG
s gorGor5.CYUI01015925v1       313288 14 +    417917 ATATA---------------TGGAGAAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5192 29 -     38397 ACGTATGGAGAAGGGACGTATGGAGCAGG
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778     5097  5 +     34961 ACGTA------------------------
i macFas5.chrUn_AQIA01076778   I 1 C 0
s macNem1.NW_012017243v1       408774  5 +  25972781 ACGTA------------------------
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1       276477 14 -   1025902 ACGTA---------------CGGAGAAGG
i cerAty1.NW_012001098v1       I 1 C 0
s manLeu1.NW_012108508v1       246481 14 -    350446 ACGTA---------------TGGAGCAGG
i manLeu1.NW_012108508v1       I 117 C 0
s colAng1.NW_012115411v1       397721 14 +   1230721 ACATA---------------TGGATCAGG
i colAng1.NW_012115411v1       I 1 T 260
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422093 19 + 155549662 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e panPan2.chrUn_NW_014024190v1 152351 188 -    177848 T

a score=10161.000000
s hg38.chrX_KI270880v1_alt     238252 7 +    284869 TGCTCTA
s panPan2.chrUn_NW_014024190v1 152163 7 -    177848 TGCTCTG
i panPan2.chrUn_NW_014024190v1 T 188 C 0
s gorGor5.CYUI01015925v1       313302 7 +    417917 TGCTCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5221 7 -     38397 TGCACTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macNem1.NW_012017243v1       408779 2 +  25972781 -----TG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276491 7 -   1025902 CGCTCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246495 7 -    350446 TGCACTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397475 7 +   1230721 TGCCCTG
i colAng1.NW_012115411v1       T 260 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422093 19 + 155549662 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macFas5.chrUn_AQIA01076778     5102 0 +     34961 C

a score=28543.000000
s hg38.chrX_KI270880v1_alt     238259 25 +    284869 GAGAGGGGACGTATGGAGAAGGTGC
s panTro5.chrX                 422112 24 + 155549662 GAGA-GGAACNNNNNNNNNNNNNNN
i panTro5.chrX                 I 19 C 0
s panPan2.chrUn_NW_014024190v1 152170 25 -    177848 GAGAGGGGACGAATGGAGAAGCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313309 17 +    417917 GAGAGGGGACGTATGGA--------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5228 25 -     38397 GAGAGGGGACGTATGGAGCAGGTGC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macNem1.NW_012017243v1       408781 10 +  25972781 GAGAGGGGAC---------------
i macNem1.NW_012017243v1       C 0 I 88
s cerAty1.NW_012001098v1       276498 25 -   1025902 GAGAGGGGACGTATGGAGAAGGTGC
i cerAty1.NW_012001098v1       C 0 I 15
s manLeu1.NW_012108508v1       246502 25 -    350446 GAGAGGGGACGTATGGAGAAGGTGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397482 25 +   1230721 GAGGGGGGGCGTATGGAGAAGGCGC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macFas5.chrUn_AQIA01076778     5102  0 +     34961 C

a score=49455.000000
s hg38.chrX_KI270880v1_alt     238284 25 +    284869 TGTAGAGAGGGGATATATGGAGAGG
s panTro5.chrX                 422136 21 + 155549662 NNNNNNNNNNG----TATGGAGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152195 25 -    177848 TCTGGAGAGGGGACGTATGGGGAGG
i panPan2.chrUn_NW_014024190v1 C 0 T 58
s gorGor5.CYUI01015925v1       313326 21 +    417917 ----GAGAGGGGACGTATGGAGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5253 25 -     38397 ACTGGAGAGGGGATGTATGGAGCAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5102 18 +     34961 --TGGAGAGGGGACATATGG-----
i macFas5.chrUn_AQIA01076778   C 0 I 117
s macNem1.NW_012017243v1       408879 25 +  25972781 ACTGGAGAGGGGACGTATGGAGAAG
i macNem1.NW_012017243v1       I 88 C 0
s cerAty1.NW_012001098v1       276538 25 -   1025902 TATGGAGAGGGGACGTATGGAGAAG
i cerAty1.NW_012001098v1       I 15 C 0
s manLeu1.NW_012108508v1       246527 25 -    350446 TCTGGAGAGGAGACGTATGGAGCAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397507 25 +   1230721 TCTGGAGAGGGGACATATGGAGCAG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=37992.000000
s hg38.chrX_KI270880v1_alt     238309 19 +    284869 CTGCTCTGGAGAGGGGACA
s panTro5.chrX                 422157 19 + 155549662 CTGCTCTGGAGAGGGGATA
i panTro5.chrX                 C 0 T 29
s gorGor5.CYUI01015925v1       313347 19 +    417917 CTGCTCTGGAGAGGGGATA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5278 19 -     38397 GTGCACTGGAGAGGGGACG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macNem1.NW_012017243v1       408904 19 +  25972781 GCGCTCTGGAGAGAGGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276563 19 -   1025902 CTGCACTGGAGAGGGGACG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246552 19 -    350446 GTGCACTGGAGAAGGGACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397532 19 +   1230721 GTGCACTGGAGAGGGGATG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macFas5.chrUn_AQIA01076778     5120 117 +     34961 I
e panPan2.chrUn_NW_014024190v1 152220 58 -    177848 T

a score=7777.000000
s hg38.chrX_KI270880v1_alt     238328 5 +    284869 TATGG
s panTro5.chrX                 422147 5 + 155549662 TATGG
i panTro5.chrX                 T 29 C 0
s gorGor5.CYUI01015925v1       313366 5 +    417917 TATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5297 5 -     38397 TATGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macNem1.NW_012017243v1       408923 5 +  25972781 TATGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276582 2 -   1025902 TA---
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246571 5 -    350446 TATGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397551 5 +   1230721 TATGG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macFas5.chrUn_AQIA01076778     5120 117 +     34961 I
e panPan2.chrUn_NW_014024190v1 152220 58 -    177848 T

a score=73933.000000
s hg38.chrX_KI270880v1_alt     238333 34 +    284869 GGAGGCTGCTC-TGGAGAGGGGATATATGGGGAGG
s panTro5.chrX                 422152 34 + 155549662 AGAGGCTGCTC-TGGAGAGGGGATATATGGAGAGG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       313371 34 +    417917 GGAGGCTGCTC-TGGAGAGGGGACGTATGGAGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5302 35 -     38397 AGAGGGGACATATGGAGAGGGGACGTATGGAGCAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5237 34 +     34961 AGCAGGTGCAC-TGGAGAGGGGATGTATGGAGCAG
i macFas5.chrUn_AQIA01076778   I 117 C 0
s macNem1.NW_012017243v1       408928 34 +  25972781 AGAAGGTGCAC-TGGAGAGGGGACGTATGGAGCAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276584 23 -   1025902 ------------TGGAGAGGGGACGTATGGAGAAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246576 34 -    350446 GGAAGGCGGTC-TGGAGAGGGGACGTATGGAGAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397556 34 +   1230721 AGCAGGTGCAC-TGGAGAGGGGACGTATGGAGCAG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e panPan2.chrUn_NW_014024190v1 152220 58 -    177848 T

a score=5986.000000
s hg38.chrX_KI270880v1_alt     238367 3 +    284869 CTG
s panTro5.chrX                 422186 3 + 155549662 CTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152162 3 -    177848 CTG
i panPan2.chrUn_NW_014024190v1 T 58 C 0
s gorGor5.CYUI01015925v1       313405 3 +    417917 CTG
i gorGor5.CYUI01015925v1       C 0 I 133
s rheMac8.chrUn_NW_014831239v1   5337 3 -     38397 GTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5271 3 +     34961 GTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408962 3 +  25972781 GTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276607 3 -   1025902 GTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246610 3 -    350446 ACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397590 3 +   1230721 GTG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=18482.000000
s hg38.chrX_KI270880v1_alt     238370 6 +    284869 CTCTGG
s panTro5.chrX                 422189 6 + 155549662 CTCTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152165 6 -    177848 CTCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313541 6 +    417917 CTCTGG
i gorGor5.CYUI01015925v1       I 133 C 0
s rheMac8.chrUn_NW_014831239v1   5340 6 -     38397 CACTAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5274 6 +     34961 CACTGG
i macFas5.chrUn_AQIA01076778   C 0 T 160
s macNem1.NW_012017243v1       408965 6 +  25972781 CACTGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276610 6 -   1025902 CTCTGG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246613 6 -    350446 CATTGG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397593 6 +   1230721 CACTGG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=31802.000000
s hg38.chrX_KI270880v1_alt     238376 8 +    284869 AGAGGGGA
s panTro5.chrX                 422195 8 + 155549662 AGAGGTGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152171 8 -    177848 AGAGGGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313547 8 +    417917 AGAGGGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5346 8 -     38397 AGAGGGGA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5120 8 +     34961 AGAGGGGA
i macFas5.chrUn_AQIA01076778   T 160 C 0
s macNem1.NW_012017243v1       408971 8 +  25972781 AGAGGGGA
i macNem1.NW_012017243v1       C 0 T 187
s cerAty1.NW_012001098v1       276616 8 -   1025902 AGAGGGGA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246619 8 -    350446 AGAGGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397599 8 +   1230721 AGAGGGGA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=34934.000000
s hg38.chrX_KI270880v1_alt     238384 16 +    284869 TATATGGGGAGGCTGC
s panTro5.chrX                 422203 16 + 155549662 TATATGGGGAGGCTGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152179 16 -    177848 CGAATGGAGAAGCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313555 16 +    417917 TATATGGGGAGGCTGC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5354 16 -     38397 CGTATGGAGAAGGCGC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5128 16 +     34961 CGTATGGAGCAGGTGC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       276624 16 -   1025902 CGTATGGAGAAGGTGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246627 16 -    350446 CGTATGGAGAAGGCGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397607 16 +   1230721 TGTATGGAGAAGGAGC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e macNem1.NW_012017243v1       408979 187 +  25972781 T

a score=2047.000000
s hg38.chrX_KI270880v1_alt     238400 2 +    284869 TC
s panTro5.chrX                 422219 2 + 155549662 TC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152195 2 -    177848 TC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313571 2 +    417917 TC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5370 2 -     38397 TC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5144 1 +     34961 -A
i macFas5.chrUn_AQIA01076778   C 0 I 1
s macNem1.NW_012017243v1       408792 2 +  25972781 TA
i macNem1.NW_012017243v1       T 187 T 88
s cerAty1.NW_012001098v1       276640 1 -   1025902 -A
i cerAty1.NW_012001098v1       C 0 I 1
s manLeu1.NW_012108508v1       246643 2 -    350446 TC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397623 2 +   1230721 TC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=79111.000000
s hg38.chrX_KI270880v1_alt     238402 23 +    284869 TGGAGAGGGGACATATGGAGAGG
s panTro5.chrX                 422221 23 + 155549662 TGGAGAGGGGACGCATGGAGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152197 23 -    177848 TGGAGAGGGGACGTATGGGGAGG
i panPan2.chrUn_NW_014024190v1 C 0 T 58
s gorGor5.CYUI01015925v1       313573 23 +    417917 TGGAGAGGGGACGTATGGAGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5372 21 -     38397 TGGAGA--GGGCGTATGGAGAAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5146 23 +     34961 TGGAGAGAGGACGTATGGAGCAG
i macFas5.chrUn_AQIA01076778   I 1 C 0
s macNem1.NW_012017243v1       408706 23 +  25972781 TGGAGAAGGGACGTATGGAGCAG
i macNem1.NW_012017243v1       T 88 C 0
s cerAty1.NW_012001098v1       276642 23 -   1025902 TGGAGAGGGGACATATGGAGAAG
i cerAty1.NW_012001098v1       I 1 C 0
s manLeu1.NW_012108508v1       246645 23 -    350446 TGGAGAGGGGACGTATGGAGAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397625 23 +   1230721 TGGGGAGGGGACGTATGGAGAAG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=76538.000000
s hg38.chrX_KI270880v1_alt     238425 29 +    284869 CTGCTCTGGAGAGGGGACATATGGAGAGG
s panTro5.chrX                 422244 29 + 155549662 CTGCTCTGGAGAGGGGACGTATGGGGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152162 29 -    177848 CTGCTCTGGAGAGGGGACGAATGGAGAAG
i panPan2.chrUn_NW_014024190v1 T 58 C 0
s gorGor5.CYUI01015925v1       313596 25 +    417917 CTGCTCTGGAGAGAGGATGTATGGA----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5393 29 -     38397 GTGCACTGGAGAGGGGACGTATGGAGAGG
i rheMac8.chrUn_NW_014831239v1 C 0 T 359
s macFas5.chrUn_AQIA01076778     5169 21 +     34961 GTGCACTGGAGAGGGGACGTA--------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408729 29 +  25972781 GTGCACTGGAGAGGGGATGTATGGAGCAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276665 29 -   1025902 GTGCACTGGAGAGGGGACGTATGGAGAAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246668 29 -    350446 CTGCACTGGAGAGGGGACATATGGAGAGG
i manLeu1.NW_012108508v1       C 0 I 15
s colAng1.NW_012115411v1       397648 28 +   1230721 ACGCTCTGGAGAGGGG-TGTATGGAGAGG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I

a score=119195.000000
s hg38.chrX_KI270880v1_alt     238454 59 +    284869 CTGCTCTGGAGAGGGGACGTATGGGGAGGCTGCTC-TGGAGAGGGGATATATGGGG-AGG----------------C
s panTro5.chrX                 422273 59 + 155549662 CTGCTCTGGAGAGGGAACGTATGGGGAGGCTGCTC-TGGAGAGGGGACGTATGGAG-AGG----------------C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152191 59 -    177848 CTGCTCTGGAGAGGGGACGTATGGGGAGGCTGCTC-TGGAGAGGGGACGTATGGGG-AGG----------------C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313621 67 +    417917 --------GAGAGGGGACGTATGGAGAAGCTGCTC-TGGAGAGGGGATGTATGGAG-AGGGGATATATGGAGAAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     5190 53 +     34961 ------TGGAGAAGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGATGTATGGAGCAGG-----------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408758 60 +  25972781 GTGCACTGGAGAGGGGACGTATGGAGAGGGGACATATGGAGAGGGGACGTATGGAGCAGG-----------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276694 59 -   1025902 GCGCTCTGGAGAGGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGACGTACGGAGAAGG-----------------
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246712 60 -    350446 GTGCACTGGAGAGGGGACGTATGGAGAGGGTACGTATGGAGAAGGGACGTATGGAGCAGG-----------------
i manLeu1.NW_012108508v1       I 15 C 0
s colAng1.NW_012115411v1       397676 59 +   1230721 ATGCTCTGGAGAGGGGACGTATGGAGAAGGTGCAC-TGGAGAGGAGACATATGGATCAGG-----------------
i colAng1.NW_012115411v1       C 0 T 173
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e rheMac8.chrUn_NW_014831239v1   5422 359 -     38397 T

a score=3940.000000
s hg38.chrX_KI270880v1_alt     238513 4 +    284869 TGTT
s panTro5.chrX                 422332 4 + 155549662 TGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152250 4 -    177848 TGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313688 4 +    417917 GGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     5243 4 +     34961 TGCA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408818 4 +  25972781 TGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276753 4 -   1025902 CGCT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       246772 4 -    350446 TGCG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397562 4 +   1230721 TGCA
i colAng1.NW_012115411v1       T 173 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     216784 380 -    811265 I
e rheMac8.chrUn_NW_014831239v1   5422 359 -     38397 T

a score=71587.000000
s hg38.chrX_KI270880v1_alt     238517 20 +    284869 CTGGAGAGGGGACGTATGGA
s panTro5.chrX                 422336 20 + 155549662 ATGGAGAGAGGATGTATGGA
i panTro5.chrX                 C 0 T 29
s panPan2.chrUn_NW_014024190v1 152254 20 -    177848 CTGGAGAGGGGACGTATGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313692 20 +    417917 CTGGAGAGGGGACGTATGGA
i gorGor5.CYUI01015925v1       C 0 I 17
s macFas5.chrUn_AQIA01076778     5247 20 +     34961 CTGGAGAGGGGATGTATGGA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408822 20 +  25972781 CTGGAGAGGGGACGTATGGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276757 16 -   1025902 CTGGAGAGGGGACGTA----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217164 20 -    811265 CTGGAGAGGGGACGTCTGGA
i chlSab2.chrUn_KE147541v1     I 380 C 0
s manLeu1.NW_012108508v1       246776 20 -    350446 CTGGAGAGGGGACGTATGGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397566 20 +   1230721 CTGGAGAGGGGACGTATGGA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e rheMac8.chrUn_NW_014831239v1   5422 359 -     38397 T

a score=14257.000000
s hg38.chrX_KI270880v1_alt     238537 8 +    284869 GAGGCTGC
s panTro5.chrX                 422327 8 + 155549662 GAGGCTGC
i panTro5.chrX                 T 29 C 0
s panPan2.chrUn_NW_014024190v1 152274 8 -    177848 GAAGCTGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313729 8 +    417917 GAGGCTGC
i gorGor5.CYUI01015925v1       I 17 C 0
s macFas5.chrUn_AQIA01076778     5267 8 +     34961 GCAGGTGC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408842 8 +  25972781 GAAGGCGC
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217184 8 -    811265 CAAGGTGC
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1       246796 8 -    350446 GAGGGTAC
i manLeu1.NW_012108508v1       C 0 I 1
s colAng1.NW_012115411v1       397586 8 +   1230721 GCAGGTGC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e cerAty1.NW_012001098v1       276773 0 -   1025902 C
e rheMac8.chrUn_NW_014831239v1   5422 359 -     38397 T

a score=81235.000000
s hg38.chrX_KI270880v1_alt     238545 31 +    284869 TCTGGAGAGGGGATATATGGGGAGGCTGCTC
s panTro5.chrX                 422335 20 + 155549662 TATGGAGAGAGGATGTATGG-----------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152282 20 -    177848 TATGGAGAGAGGATGTATGG-----------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313737 31 +    417917 TCTGGAGAGGGGATATATGGGGAGGCTGCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5063 31 -     38397 TATGGAGAGGGGACGTATGGAGCAGGTGCAC
i rheMac8.chrUn_NW_014831239v1 T 359 C 0
s macFas5.chrUn_AQIA01076778     5275 31 +     34961 ACTGGAGAGGGGATGTATGGAGAGGGGACAT
i macFas5.chrUn_AQIA01076778   C 0 I 1
s macNem1.NW_012017243v1       408850 31 +  25972781 TCTGGAGAGAGGACGTATGGAGAAGGTGCAC
i macNem1.NW_012017243v1       C 0 T 175
s cerAty1.NW_012001098v1       276773 29 -   1025902 --TGGAGAGGGGATGTATGGAGAAGCTGCAC
i cerAty1.NW_012001098v1       C 0 I 15
s chlSab2.chrUn_KE147541v1     217193 30 -    811265 C-TGGAGAGGGGACGTATGGAGAGGGGACGT
i chlSab2.chrUn_KE147541v1     I 1 I 1
s manLeu1.NW_012108508v1       246805 31 -    350446 TATGGAGAAGGGACGTATGGAGCAGGTGCAC
i manLeu1.NW_012108508v1       I 1 C 0
s colAng1.NW_012115411v1       397594 31 +   1230721 ACTGGAGAGGGGATGTATGGAGAAGGAGCTC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=191252.000000
s hg38.chrX_KI270880v1_alt     238576 50 +    284869 TGGAGAGGGGACGTATGGAGAGGCTGCTC-TGGAGAGGGCATGTATGGAGA
s panTro5.chrX                 422355 49 + 155549662 -AGAGAGGGGATTTATGGAGAAGCTGCTC-TGGAGAGAGCATGTATGGAGA
i panTro5.chrX                 C 0 T 48
s panPan2.chrUn_NW_014024190v1 152302 49 -    177848 -GGAGAGGGGATTTATGGAGAAGCTGCTC-TGGAGAGAGCATGTATGGAGA
i panPan2.chrUn_NW_014024190v1 C 0 T 189
s gorGor5.CYUI01015925v1       313768 50 +    417917 TGGAGAGGGGACGTATGGAGAAGCTGCTC-TGGAGAGAGGACGTATGGAGA
i gorGor5.CYUI01015925v1       C 0 I 64
s rheMac8.chrUn_NW_014831239v1   5094 51 -     38397 TGGAGAGGGGACGTATGGAGAGGGGACATATGGAGAGGGGACGTATGGAGC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5307 50 +     34961 TGGAGAGGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGACGTATGGAGA
i macFas5.chrUn_AQIA01076778   I 1 C 0
s macNem1.NW_012017243v1       408706 50 +  25972781 TGGAGAAGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGATGTATGGAGC
i macNem1.NW_012017243v1       T 175 C 0
s cerAty1.NW_012001098v1       276817 50 -   1025902 TGGAGAGGGGACGTATGAAGAAGGCACTC-TGGAGAGGGGACGTACGGAGA
i cerAty1.NW_012001098v1       I 15 C 0
s chlSab2.chrUn_KE147541v1     217224 50 -    811265 TGGAGAAGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGACGTATGAAGA
i chlSab2.chrUn_KE147541v1     I 1 C 0
s manLeu1.NW_012108508v1       246836 50 -    350446 TGGAGAGGAGACGTATGGAGCAGGTGCAC-TGGAGAGGGGACGTATGGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397625 49 +   1230721 TGGGGAGGGGACGTATGGAGAAGACGCTC-TGGAGAGGGG-TGTATGGAGA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=14535.000000
s hg38.chrX_KI270880v1_alt     238626 10 +    284869 GGC---------------TGCTCTG
s gorGor5.CYUI01015925v1       313882 10 +    417917 GGC---------------TGCTCTG
i gorGor5.CYUI01015925v1       I 64 C 0
s rheMac8.chrUn_NW_014831239v1   5145 10 -     38397 AGG---------------TGCACTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5357 10 +     34961 AGG---------------CGCTCTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408756 10 +  25972781 AGG---------------TGCACTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276867 10 -   1025902 AGG---------------CGCTCTG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217274 10 -    811265 AGG---------------CGCTTTG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       246886 25 -    350446 GGGGACGTATGGAGAAGCTGCACTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397674 10 +   1230721 GGA---------------TGCTCTG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422404 48 + 155549662 T
e panPan2.chrUn_NW_014024190v1 152351 189 -    177848 T

a score=176522.000000
s hg38.chrX_KI270880v1_alt     238636 63 +    284869 GAGAGGGGACATATGGAGAGGCTGCTCTGGAGAGGGGATGTA--------------TGGAGA--G--------------GGGACGTATGGAGA
s panTro5.chrX                 422356 65 + 155549662 GAGAGGGGATTTATGGAGAAGCTGCTCTGGAGAGAGCATGTA--------------TGGAGACCG--------------GGGACGTATGGAGA
i panTro5.chrX                 T 48 T 275
s gorGor5.CYUI01015925v1       313892 63 +    417917 GAGAGGGGACGAATGGAGAAGCTGCTCTGGAGAGGG-ATGTA--------------TGGAGA-GA--------------GGGACGTATGGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5155 63 -     38397 GAGAGAGGACGTATGGAGCAGGTGCACTGGAGAGGGGACGTA--------------TGGAGA--A--------------GGGACGTATGGAGC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5367 63 +     34961 GAGAGAGGACGTATGGAGAAGGTGCACTGGAGAGGGGACGTA--------------TGGAGA--A--------------GGGACGTATGGAGC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408766 49 +  25972781 GAGAGGGGACGTA--------------TGGAGAGGGGACATA--------------TGGAGA--G--------------GGGACGTATGGAGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276877 77 -   1025902 GAGAGGGGACGTATGGAGCAGGTGCACTGGAGAGGGGACGTA--------------TGGAGA--AGGCGCTCTGGAGAGGGGACGTATGGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217284 63 -    811265 GAGAGGAGACGTCTGGAGAAGGTGCACTGGAGAGGGGACATA--------------TGGAGA--G--------------GGGACGTATGGAGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       246911 77 -    350446 GAGAGGGGACATATGGAGCAGGTTCACTGAAGAGGGGACGTATGGAGCAGGTGCACTGGAGA--G--------------GGGACGTATGGAGC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397684 77 +   1230721 GAGAGGGGACGTATGGAGAAGGTGCACTGGAGAGGAGACATATGGATCAGGTGCACTGGAGA--G--------------GGGACGTATGGAGC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panPan2.chrUn_NW_014024190v1 152351 189 -    177848 T

a score=6876.000000
s hg38.chrX_KI270880v1_alt     238699 2 +    284869 AG
s gorGor5.CYUI01015925v1       313955 2 +    417917 AG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5218 2 -     38397 AG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5430 2 +     34961 AG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408815 2 +  25972781 AG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276954 2 -   1025902 AG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217347 2 -    811265 AG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       246988 2 -    350446 AG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397761 2 +   1230721 AG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422421 275 + 155549662 T
e panPan2.chrUn_NW_014024190v1 152351 189 -    177848 T

a score=64722.000000
s hg38.chrX_KI270880v1_alt     238701 18 +    284869 CTGCTCTGGAGAGGGGAC
s panPan2.chrUn_NW_014024190v1 152162 18 -    177848 CTGCTCTGGAGAGGGGAC
i panPan2.chrUn_NW_014024190v1 T 189 C 0
s gorGor5.CYUI01015925v1       313957 18 +    417917 CTGCTCTGGAGAGGGGAT
i gorGor5.CYUI01015925v1       C 0 I 17
s rheMac8.chrUn_NW_014831239v1   5220 18 -     38397 GTGCACTGGAGAGGGGAC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5432 18 +     34961 GTGCACTGGAGAGGGGAT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408817 18 +  25972781 GTGCACTGGAGAGGGGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276956 18 -   1025902 ACGCACTGGAGAGGGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217349 18 -    811265 GTGCACTGGAGAGGGGAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       246990 18 -    350446 GTGCACTGGAGAGGGGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397763 18 +   1230721 GTGCACTGGAGAGGGGAT
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422421 275 + 155549662 T

a score=122045.000000
s hg38.chrX_KI270880v1_alt     238719 30 +    284869 GTATGGGGAGGCTGCTCTGGAGAGGGGACA
s panTro5.chrX                 422146 30 + 155549662 GTATGGAGAGGCTGCTCTGGAGAGGGGATA
i panTro5.chrX                 T 275 T 29
s panPan2.chrUn_NW_014024190v1 152180 30 -    177848 GAATGGAGAAGCTGCTCTGGAGAGGGGACG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       313992 30 +    417917 GTATGGAGAAGCTGCTCTGGAGAGGGGATG
i gorGor5.CYUI01015925v1       I 17 I 16
s rheMac8.chrUn_NW_014831239v1   5238 30 -     38397 GTATGGAGCAGGTGCACTGGAGAGGGGATG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5450 30 +     34961 GTATGGAGCAGGTGCACTGGAGAGGGGACG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408835 30 +  25972781 GTATGGAGAAGGCGCTCTGGAGAGAGGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       276974 30 -   1025902 GTATGGAGCAGGTGCACTGGAGAGGGGACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217367 30 -    811265 GTATGGAGAAGGCGCTTTGGAGAGGGGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247008 30 -    350446 GTATGGAGAAGGCGCTCTGGAGAGGAGACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397781 30 +   1230721 GCATGGAGAAGGCGCTCTGGGGAGGGGACG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=136791.000000
s hg38.chrX_KI270880v1_alt     238749 39 +    284869 TATGGAGAGGCTGCTCTGGAGAGGGGATATATGGGGAGG
s panTro5.chrX                 422147 39 + 155549662 TATGGAGAGGCTGCTCTGGAGAGGGGATATATGGAGAGG
i panTro5.chrX                 T 29 C 0
s panPan2.chrUn_NW_014024190v1 152210 39 -    177848 TATGGGGAGGCTGCTCTGGAGAGGGGACGTATGGGGAGG
i panPan2.chrUn_NW_014024190v1 C 0 T 87
s gorGor5.CYUI01015925v1       314038 39 +    417917 TATGGAGAGGCTGCTCTGGAGAGGGGATATATGGGGAGG
i gorGor5.CYUI01015925v1       I 16 C 0
s rheMac8.chrUn_NW_014831239v1   5268 39 -     38397 TATGGAGCAGGTGCACTGGAGAGGGGACGTATGGAGAGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5480 25 +     34961 TATGGAGAA--------------GGGACGTATGGAGCAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408865 39 +  25972781 TATGGAGAAGGTGCACTGGAGAGGGGACGTATGGAGAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277004 39 -   1025902 TATGGAGAAGGCGCTCTGGAGATGGGACGTATGGAGCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217397 39 -    811265 TATGAAGAAGGCGCTTTGGAGAGCAGACGTCTGGAGAAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247038 39 -    350446 TATGGAGAAGGCGCTCTGGAGAGGGGACATATGGAGAAG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397811 39 +   1230721 TATGGAGAAGGCGCTCTGGGGAGGGGATGTATGGAGAAG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=104000.000000
s hg38.chrX_KI270880v1_alt     238788 27 +    284869 CTGCTC-TGGAGAGGGGACATATGGAGA
s panTro5.chrX                 422186 27 + 155549662 CTGCTC-TGGAGAGGTGATATATGGGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152162 27 -    177848 CTGCTC-TGGAGAGGGGACGAATGGAGA
i panPan2.chrUn_NW_014024190v1 T 87 C 0
s gorGor5.CYUI01015925v1       314077 27 +    417917 CTGCTC-TGGAGAGGGGACGTATGGAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5307 28 -     38397 GGACATATGGAGAGGGGACGTATGGAGC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5505 27 +     34961 GTGCAC-TGGAGAGGGGATGTATGGAGC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408904 27 +  25972781 GCGCTC-TGGAGAGAGGACGTATGGAGA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277043 27 -   1025902 GTGCAC-TGGAGAGGGGACGTATGGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217436 27 -    811265 GTGCAC-TGGAGAGGGGACGTATGGAGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247077 27 -    350446 GCGCTC-TGGAGAGGGGACGTATGGAGA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397850 27 +   1230721 GCGCTC-TGGAGAGGGGACGTATGGAGA
i colAng1.NW_012115411v1       C 0 T 116
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=87417.000000
s hg38.chrX_KI270880v1_alt     238815 21 +    284869 GGCTGCTCTGGAGAGGGCATG
s panTro5.chrX                 422213 21 + 155549662 GGCTGCTCTGGAGAGGGGACG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152189 21 -    177848 AGCTGCTCTGGAGAGGGGACG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314104 21 +    417917 AGCTGCTCTGGAGAGAGGATG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5335 21 -     38397 AGGTGCACTAGAGAGGGGACG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5532 21 +     34961 AGGTGCACTGGAGAGGGGACG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408931 21 +  25972781 AGGTGCACTGGAGAGGGGACG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277070 21 -   1025902 AGGCGCTCTGGAGAGGGGACG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217463 21 -    811265 AGGTGCACTGGAGAGGGGACG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247104 21 -    350446 AGCTGCACTGGAGAGGGGACG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397761 21 +   1230721 AGGTGCACTGGAGAGGGGATG
i colAng1.NW_012115411v1       T 116 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I

a score=30224.000000
s hg38.chrX_KI270880v1_alt     238836 9 +    284869 TATGGAGAG
s panTro5.chrX                 422234 9 + 155549662 CATGGAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152210 9 -    177848 TATGGGGAG
i panPan2.chrUn_NW_014024190v1 C 0 T 29
s gorGor5.CYUI01015925v1       314125 9 +    417917 TATGGAGAG
i gorGor5.CYUI01015925v1       C 0 I 16
s rheMac8.chrUn_NW_014831239v1   5356 9 -     38397 TATGGAGAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5553 9 +     34961 TATGGAGAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408952 9 +  25972781 TATGGAGCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277091 9 -   1025902 TATGGAGAA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247125 9 -    350446 TATGGAGAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397782 9 +   1230721 CATGGAGAA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C

a score=43182.000000
s hg38.chrX_KI270880v1_alt     238845 20 +    284869 GCTGCTC-TGGAGAGGGGAC---------------A
s panTro5.chrX                 422243 20 + 155549662 GCTGCTC-TGGAGAGGGGAC---------------G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152190 20 -    177848 GCTGCTC-TGGAGAGGGGAC---------------G
i panPan2.chrUn_NW_014024190v1 T 29 C 0
s gorGor5.CYUI01015925v1       314150 35 +    417917 GCTGCTC-TGGAGAGGGGACGAATGGAGAGGGGAGG
i gorGor5.CYUI01015925v1       I 16 C 0
s rheMac8.chrUn_NW_014831239v1   5365 18 -     38397 GGCGCTC-TGGAGAGGGCG-----------------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5562 21 +     34961 GGGACATATGGAGAGGGGAC---------------G
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408961 20 +  25972781 GGTGCAC-TGGAGAGGGGAC---------------G
i macNem1.NW_012017243v1       C 0 T 54
s cerAty1.NW_012001098v1       277100 20 -   1025902 GACGCAC-TGGAGAGGGGAC---------------A
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247134 20 -    350446 GGCACTC-TGGAGAGGGGAC---------------G
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397791 20 +   1230721 GGCGCTC-TGGGGAGGGGAC---------------G
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C

a score=35134.000000
s hg38.chrX_KI270880v1_alt     238865 15 +    284869 TATGGAGAGGCTGCT
s panTro5.chrX                 422263 15 + 155549662 TATGGGGAGGCTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152210 15 -    177848 TATGGGGAGGCTGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314185 15 +    417917 TATGGAGAGGCTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5383 15 -     38397 TATGGAGAAGGTGCA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5583 15 +     34961 TATGGAGCAGGTGCA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       277120 15 -   1025902 TATGGAGAAGCTGCA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247154 15 -    350446 TATGGAGCAGGTGCT
i manLeu1.NW_012108508v1       C 0 I 203
s colAng1.NW_012115411v1       397811 15 +   1230721 TATGGAGAAGGCGCT
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e macNem1.NW_012017243v1       408981 54 +  25972781 T

a score=107096.000000
s hg38.chrX_KI270880v1_alt     238880 45 +    284869 CTGGAGAGGGGACGTATGGGGAGGCTGCTC-TGGAGAGGGGACGTA
s panTro5.chrX                 422278 45 + 155549662 CTGGAGAGGGAACGTATGGGGAGGCTGCTC-TGGAGAGGGGACGTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152225 45 -    177848 CTGGAGAGGGGACGTATGGGGAGGCTGGTC-TGGAGAGGGGACGTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314200 33 +    417917 CTGGAGAGGGGACGTATGG-------------AGAGAGGGGACGTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5398 46 -     38397 CTGGAGAGGGGACGTATGGAGAGGGGATATACGGAGAGGGGACGTA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5598 45 +     34961 CTGGAGAGAGGACGTATGGAGCAGGTTCAC-TGGAGAGGGGACGTA
i macFas5.chrUn_AQIA01076778   C 0 T 146
s cerAty1.NW_012001098v1       277135 45 -   1025902 CTGGAGAGGGGACGTATGGAGCAGGTGCAC-TGGAGAGGGGACATA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247372 45 -    350446 CTGGAGAGGGGACGTATGGAGAAGCTGCAC-TGGAGAGGGGACGTA
i manLeu1.NW_012108508v1       I 203 C 0
s colAng1.NW_012115411v1       397826 45 +   1230721 CTGGGGAGGGGATGTATGGAGAAGGCGCTC-TGGAGAGGGGACGTA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e macNem1.NW_012017243v1       408981 54 +  25972781 T

a score=6876.000000
s hg38.chrX_KI270880v1_alt     238925 2 +    284869 TG
s panTro5.chrX                 422323 2 + 155549662 TG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152270 2 -    177848 TG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314233 2 +    417917 TG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5444 2 -     38397 TG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5497 2 +     34961 TG
i macFas5.chrUn_AQIA01076778   T 146 C 0
s cerAty1.NW_012001098v1       277180 2 -   1025902 TG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247417 2 -    350446 TG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397871 2 +   1230721 TG
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C
e macNem1.NW_012017243v1       408981 54 +  25972781 T

a score=4500.000000
s hg38.chrX_KI270880v1_alt     238927 1 +    284869 G
s panTro5.chrX                 422325 1 + 155549662 G
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152272 1 -    177848 G
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314235 1 +    417917 G
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5446 1 -     38397 G
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5499 1 +     34961 G
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408927 1 +  25972781 G
i macNem1.NW_012017243v1       T 54 C 0
s cerAty1.NW_012001098v1       277182 1 -   1025902 G
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247419 1 -    350446 G
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       397873 1 +   1230721 G
i colAng1.NW_012115411v1       C 0 I 691
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C

a score=5900.000000
s hg38.chrX_KI270880v1_alt     238928 2 +    284869 GG
s panTro5.chrX                 422326 2 + 155549662 AG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152273 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314236 2 +    417917 AG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5447 2 -     38397 AG
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macFas5.chrUn_AQIA01076778     5500 2 +     34961 AG
i macFas5.chrUn_AQIA01076778   C 0 I 1
s macNem1.NW_012017243v1       408928 2 +  25972781 AG
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       277183 2 -   1025902 AG
i cerAty1.NW_012001098v1       C 0 I 1
s manLeu1.NW_012108508v1       247420 2 -    350446 AG
i manLeu1.NW_012108508v1       C 0 I 1
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=546.000000
s hg38.chrX_KI270880v1_alt     238930 1 +    284869 A
s panTro5.chrX                 422328 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152275 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314238 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e manLeu1.NW_012108508v1       247422 1 -    350446 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C
e cerAty1.NW_012001098v1       277185 1 -   1025902 I
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   5449 1 -     38397 I
e macNem1.NW_012017243v1       408930 1 +  25972781 I
e macFas5.chrUn_AQIA01076778     5502 1 +     34961 I

a score=54896.000000
s hg38.chrX_KI270880v1_alt     238931 37 +    284869 GGCTGCTCTGGAGAGGGGATATATGGGGAG----GCTGTTC
s panTro5.chrX                 422329 30 + 155549662 GGCTGCTATGGAGAGAGGATGTATGGAGAG-----------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152276 30 -    177848 AGCTGCTATGGAGAGAGGATGTATGGGGAG-----------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314239 41 +    417917 AGCTGCTCTGGAGAGAGGATGTATGGAAAGAGAGGATGTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5450 37 -     38397 AGGTGCACTGGAGAGAGGACGTATGGAGCA----GGTTCAC
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778     5503 37 +     34961 AGGTGCACTGGAGAGGGGATGTATGGAGCA----GGTGCAC
i macFas5.chrUn_AQIA01076778   I 1 I 103
s macNem1.NW_012017243v1       408931 37 +  25972781 AGGTGCACTGGAGAGGGGACGTATGGAGCA----GGTGCAC
i macNem1.NW_012017243v1       I 1 C 0
s cerAty1.NW_012001098v1       277186 23 -   1025902 AGGTGCACTAGAGAGGGGACGTA------------------
i cerAty1.NW_012001098v1       I 1 C 0
s manLeu1.NW_012108508v1       247423 37 -    350446 AGGCGCTCTGGAGAGGGGACGTATGGAGAA----GGTGCTC
i manLeu1.NW_012108508v1       I 1 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=44548.000000
s hg38.chrX_KI270880v1_alt     238968 23 +    284869 TG--GAGAGGGGACGTATGGAGAGG
s panTro5.chrX                 422359 18 + 155549662 -------AGGGGATTTATGGAGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152306 18 -    177848 -------AGGGGATTTATGGAGAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314280 24 +    417917 GGA-GAGAGGGGACGTATGGAGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5487 23 -     38397 --TGGAGAGGGGACATATGGAGAGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5643 23 +     34961 --TGGAGAGGGGACGTATGGAGCAG
i macFas5.chrUn_AQIA01076778   I 103 C 0
s macNem1.NW_012017243v1       408968 23 +  25972781 --TGGAGAGGGGACGTATGCAGAGG
i macNem1.NW_012017243v1       C 0 T 10
s cerAty1.NW_012001098v1       277209 23 -   1025902 --TGGAGAGGGGACGTATGGAGAAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247460 23 -    350446 --TGGAGAGGGGACATATGGAGAAG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=33615.000000
s hg38.chrX_KI270880v1_alt     238991 26 +    284869 CTGCTCTGGAGAGGGGATGTATGGAG
s panTro5.chrX                 422377 26 + 155549662 CTGCTCTGGAGAGAGCATGTATGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152324 26 -    177848 CTGCTCTGGAGAGAGCATGTATGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314304 25 +    417917 GTGCTCTGGAGAGGG-ACGTATGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5510 12 -     38397 --------------GGACGTATGGAG
i rheMac8.chrUn_NW_014831239v1 C 0 I 11
s macFas5.chrUn_AQIA01076778     5666 19 +     34961 GTGCACTGGAGAGGGGACG-------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       277232 26 -   1025902 GCGCTCTGGAGAGGGGACGTATGGAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       247483 26 -    350446 GCGCACTGGAGAGGGGACGTATGGAG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e macNem1.NW_012017243v1       408991 10 +  25972781 T

a score=1365.000000
s hg38.chrX_KI270880v1_alt     239017 1 +    284869 A
s panTro5.chrX                 422403 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152350 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314329 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       277258 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 I 10
s manLeu1.NW_012108508v1       247509 1 -    350446 A
i manLeu1.NW_012108508v1       C 0 I 10
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484 0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   5522 11 -     38397 I
e macNem1.NW_012017243v1       408991 10 +  25972781 T
e macFas5.chrUn_AQIA01076778     5685 0 +     34961 C

a score=6126.000000
s hg38.chrX_KI270880v1_alt     239018 15 +    284869 GAGGGGATGTATGGA
s panTro5.chrX                 422404 15 + 155549662 CCGGGGACGTATGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152351 15 -    177848 CAGGGGTCGTATGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314330 15 +    417917 GAGGGGACGTATGGA
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e manLeu1.NW_012108508v1       247510 10 -    350446 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e cerAty1.NW_012001098v1       277259 10 -   1025902 I
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   5522 11 -     38397 I
e macNem1.NW_012017243v1       408991 10 +  25972781 T
e macFas5.chrUn_AQIA01076778     5685  0 +     34961 C

a score=4980.000000
s hg38.chrX_KI270880v1_alt     239033 11 +    284869 GAGAGGGGATT
s panTro5.chrX                 422419  3 + 155549662 GAG--------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152366  3 -    177848 GAG--------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314345 11 +    417917 GAGAGGCGACG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5533 11 -     38397 GAGAGGGGACG
i rheMac8.chrUn_NW_014831239v1 I 11 C 0
s cerAty1.NW_012001098v1       277269 11 -   1025902 GAGAGGGGACG
i cerAty1.NW_012001098v1       I 10 C 0
s manLeu1.NW_012108508v1       247520 11 -    350446 GAGAGGGGATG
i manLeu1.NW_012108508v1       I 10 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e chlSab2.chrUn_KE147541v1     217484  0 -    811265 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e macNem1.NW_012017243v1       408991 10 +  25972781 T
e macFas5.chrUn_AQIA01076778     5685  0 +     34961 C

a score=5096.000000
s hg38.chrX_KI270880v1_alt     239044 2 +    284869 TA
s gorGor5.CYUI01015925v1       314356 2 +    417917 TA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5544 2 -     38397 TA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5685 2 +     34961 TA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408981 2 +  25972781 TA
i macNem1.NW_012017243v1       T 10 C 0
s cerAty1.NW_012001098v1       277280 2 -   1025902 TA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217484 2 -    811265 TA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247531 2 -    350446 TA
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 365860 113 + 123869142 I
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e panTro5.chrX                 422422 0 + 155549662 C
e colAng1.NW_012115411v1       397874 691 +   1230721 I
e panPan2.chrUn_NW_014024190v1 152369 0 -    177848 C

a score=136007.000000
s hg38.chrX_KI270880v1_alt     239046 39 +    284869 TGGAGAGGTC-------CCACACCAGGCTCCATCCAAGGAAGGGAG
s panTro5.chrX                 422422 32 + 155549662 -------GTC-------CCACACCAGGCTCCATCGAAGGAAGGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152369 32 -    177848 -------GTC-------CCACACCAGGCTCCATCGAAGGAAGGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314358 39 +    417917 TGGAGAGGTC-------CCACACCAGGCTCCATCCAAGGAAGGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5546 39 -     38397 TGCAGAGGTC-------CTACCCCAGCCTCCATCAAAGGAAGGGAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5687 39 +     34961 TGCAGAGGTC-------CTACCCCAGCCTCCATCAAAGGAAGGGAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       408983 39 +  25972781 TGCAGAGGTC-------CTACCCCAGCCTCCATCAAAGGAAGGGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277282 39 -   1025902 TGGAGAGGCC-------CTACCCCAGCCTCCATCAAAGCAAGGGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217486 39 -    811265 TGGAGAAGTC-------CTACCCCAGCCTCCATCAAAGGAAGGGAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247533 39 -    350446 TGGAGAGGTC-------CTACCCCAGCCTCCATCAAAGCAAGGGAG
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 365973 46 + 123869142 TGGAGAAGGCGCACGGATTACTCCAGGCCCCAGCCAAGGCGAGGAC
i canFam3.chrX                 I 113 C 0
e saiBol1.JH378345             263676 2735 +    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=298833.000000
s hg38.chrX_KI270880v1_alt     239085 78 +    284869 -AAGCAT-TTTCACCC-AGGCCCTGTTTACGCTTCGC---CGCGCTGTCCTCTGTCACGCACCGTGGCCGAGACCACAGCTGAA
s panTro5.chrX                 422454 78 + 155549662 -AAGCGT-TTTCACCC-AGGCCCTGTTTACGCTTTGC---CACGCTGTCCTCTGTCACGCACCGTGGCCGAGACCACAGCTGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152401 78 -    177848 -AAGCGT-TTTCACCC-AGGCCCTGTTTACGCTTTGC---CACTCTGTCCTCTGTCACGCACCGTGGCCGAGACCACAGCTGAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314397 79 +    417917 -AAGCATCTTTCACCC-AGGCCCTGTTTACGCTTCGC---CACGCTGTCCTCTGTCACGCACCGTGGCCGAGACCACAGCTGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5585 78 -     38397 -AAGTAT-TTTCGCCC-TGGCGCTATTTACGCTTTGC---CACGCTGTCCTCTGTCACCGGCCGTGGCCAAAACCACAGCCGAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     5726 78 +     34961 -AAGTAT-TTTCGCCC-TGGCGCTATTTACGCTTTGC---CACGCTGTCCTCTGTCACCGGCCGTGGCCGAAACCACAGCCGAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409022 78 +  25972781 -AAGTAT-TTTCGCCC-TGGCGCTATTTACGCTTTGC---CACGCTGTCCTCTGTCACCGGCCGTGGCCGAAACCACAGCCGAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277321 78 -   1025902 -AAGTAT-TTTCGCCC-TGGCGCTATTTACGCTTTGC---CACGCCGTCCTCTGTCACCGGCCGTGGCCGAAACCACAGCCGAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     217525 78 -    811265 -AAGTAT-TTTCGCCC-TGGCACTATTTAGGCTTTGC---CACGCTATCCTCTGTCACCGGCCGTGGCCGAGACCACAGCCGAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       247572 77 -    350446 -AAGTAT-TTTCGCCC-TGGCGCTATTTACGCTTTG----CACGCTATCCTCTGTCACCGGCCGTGGCCGAAACCACAGCGGAA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             203210 78 -    465904 -AAGCGT-TTTCCCCCATGGCCCTGTGTGTCCTCTGT---TGGGGTGACTTCTGTCACGCGCCGTGGCCAAGACCACGACC-AC
i saiBol1.JH378345             I 1702 C 0
s canFam3.chrX                 366019 70 + 123869142 GATGCAC-GCACGGCA-CCGC-CTTTGGGGGCTTTGCAGGCGCGTTGTGC----------ACCGTGGCCAAGACCAGAGCGGC-
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             307568 4978 +  11138919 I
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=224974.000000
s hg38.chrX_KI270880v1_alt     239163 63 +    284869 CGTCCAGAGGCTGCAGAGAAAAACAGAAGCTGG----CTCtgtgtgtgtgtgtgtgtgtgtgtgtgt
s panTro5.chrX                 422532 63 + 155549662 CGTCCAGAGGCTGCAGAGAAAAACAGAAGCCGG----Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152479 63 -    177848 CGTCCAGAGGCTGCAGAGAAAAACAGAAGCCGG----Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314476 63 +    417917 CGTTCAGAGGCTGCAGAGAAAAACAGAAGCCGG----Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5663 61 -     38397 CGTTCAGAGGCTGCAGAG-AAAGCAGAAACCgt----gtgtgtatgtgtgtgtgtgtgtgtgtgtg-
i rheMac8.chrUn_NW_014831239v1 C 0 I 11
s macFas5.chrUn_AQIA01076778     5804 62 +     34961 CGTTCAGAGGCTGCAGAG-AAAGCAGAAACTGC----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i macFas5.chrUn_AQIA01076778   C 0 I 20
s macNem1.NW_012017243v1       409100 66 +  25972781 CGTTCAGAGGCTGCAGAG-AAAGCAGAAACCGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i macNem1.NW_012017243v1       C 0 I 20
s cerAty1.NW_012001098v1       277399 62 -   1025902 CGTTCAGAGGCTGCAGAG-AAAGCAGAAGCCgt----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i cerAty1.NW_012001098v1       C 0 I 20
s chlSab2.chrUn_KE147541v1     217603 61 -    811265 CGTTCAGAGGCTGCAGAG-AAAGCAGAAACCGC----GTGCGCGCGCGCgtgtgtgtgtgtgtgtg-
i chlSab2.chrUn_KE147541v1     C 0 I 15
s manLeu1.NW_012108508v1       247649 62 -    350446 CGTTCAGAGGCTGCAGAG-AAAGCAGAAACCGC----GCGTGCgtgtgtgtgtgtgtgtgtgtgtgt
i manLeu1.NW_012108508v1       C 0 I 30
s saiBol1.JH378345             203288 40 -    465904 CATTCACAGGCCACGGAG-AAGACACGCGCCGG----GTGTGAGT----------------------
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             312546 40 +  11138919 CGTTCACAGGCTGCAGAG-GCAACACGATCCGA----GTGCATAA----------------------
i otoGar3.GL873584             I 4978 C 0
s canFam3.chrX                 366089 41 + 123869142 CGTTCGCGGACTGCGGCACAAAACACAGTCCGT----GTGCGTGC----------------------
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e colAng1.NW_012115411v1       397874 691 +   1230721 I

a score=2890133.000000
s hg38.chrX_KI270880v1_alt     239226 487 +    284869 g--------------ACATGACAGC-CGGGCCTCTGAAGCGCGCCGTGGAAGACGCAGTTGTGAGGATATACGTGGCAATTAAAAATAATTGGCAAGCAGGTCTCGTTCAGCCCTTCGGAGAATG-CAGCGACCATATAA-TGATGTTTCATTAGCCATGCTGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGCCTCAT-AAAGGAGAGA---AGGA------------GGGAAGAGAGAAACATG----AAAAAA-CCCAAAA-TACCCCAGCTCAGATTAGCATTGCATGTAATCGGCACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCAGCTAG----GGCTTCTGCACACGTCATTAGCTGCATTTACA-CCGTTATGCGGATGCTCGTTTTGTAGCTAAACATTCCTGGAATCAAG----GGTGCCT--CTG---TTGCTTACGGCAATTGCACTCACTTTATTTTATGTTTTCTTGCTAATGTTGGCTTAACCTCCAAAT--CAAAAATTCTCT
s panTro5.chrX                 422595 493 + 155549662 g--------tgtgAGACATGACAGC-CGGGCCTCTGAAGCACGCCGTGGAAGACACAATTGTGAGGATGTATGTGGCAATTAAAAATAATTGGCAAGCAGGTCTCGTTCAGCCCTTCGGAGAATG-CAGCGACCATATAA-TGATGTTTCATTAGCCATGCTGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGCCTCAT-AAAGGAGAGA---AGGG------------GAGAAAAGAGAAACATG----AGAAAA-AACAAAA-TACCCCGGCTCAGATTAGCATTGCATGTAATCGGCACTTCATTAGCTAATTGATTTCTTATTACTTACAGGCAGTGGC-CCAGCTAC----GGCTTCTGCACACATCATTAGCTGCATTTACA-CTATTATGCGGATGCTCGTTTTGTAGCTAAACATTCCTGGAATCAAG----GGTGCCT--CTG---TTGCTTACGGCAATTGCACTCACTTTATTTTATTTTTTCCTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 152542 500 -    177848 gtgtgtgtgtgtgAGACATGACAGC-CGGGCCTCTGAAGCACGCCGTGGAAGACACAATTGTGAGGATATATGTGGCAATTAAAAATAATTGGCAAGCAGGTCTCGTTCAGCCCTTCGGAGAATG-CAGCGACCATATAA-TGATGTTTCATTAGCCATGCTGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGCCTCAT-AAAGGAGAGA---AGGG------------GAGAAAAGAGAAACATG----AAAAAA--ACAAAA-TACCCCGGCTCAGATTAGCATTGCATGTAATCGGCACTTCATTAGCTAATTGATTTCTTATTACTTACAGGCAGTGGC-CCAGCTAC----GGCTTCTGCACACGTCATTAGCTGCATTTACA-CTATTATGCGGATGCTCGTTTTGTAGCTAAACATTCCTGGAATCAAG----GGTGCCT--CTG---TTGCTTACGGCAATTGCACTCACTTTATTTTATTTTTTCCTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       314539 498 +    417917 gtgtgtgtgtgtgAGACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGGA--TATGTGGCAATTAAAAATAATTGGCAAGCAGGTCTCGTTCGTCCCTTCGGAGAATG-CAGCGACCATATAATTGATGTTTCATTAGCCATGCTGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGCCTCATAAAAGGAGAGA---AGGG--------------GAAAAGAGAAACATG----AAAAAAAAAAAAAA-TACCCCGGCTCAGATTAGCATTGCATGTAATCGGCACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTAG----GGCTTCTGCACACGTCATTAGCCGCACTTACA-CGATTATGCAGATGCTCATTTTG-AGCTAAACATTCCTGGAATCAAG----GGTGCCT--CTG---TTGCTTACGGCAATTTCACTCACTTTATTTTATGTTTTCTTGCTAATATTGGCTTAACCTTC-AAT--CAAAAATTCTCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   5735 490 -     38397 --------------GACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAATCAT-AAAGGAGAGAGTGGGGT---GGGGG----GGGGGGAGAGAAACATT----AAAAAT-AAAA----AAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAAGCTCATTTCGTAGCCAAACGTTCCTGGAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i rheMac8.chrUn_NW_014831239v1 I 11 C 0
s macFas5.chrUn_AQIA01076778     5886 491 +     34961 --------------GACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAATCAT-AAAGGAGAGAGTGGGGT--GGGGGG----GGGGGGAGAGAAACATT----AAAAAT-AAAA----AAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAAGCTCATTTCGTAGCCAAACGTTCCTGGAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i macFas5.chrUn_AQIA01076778   I 20 C 0
s macNem1.NW_012017243v1       409186 489 +  25972781 --------------GACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAATCAT-AAAGGAGAGAGTGGGGT----GGGG----GGGGGGAGAGAAACATT----AAAAAT-AAAA----AAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAAGCTCATTTCGTAGCCAAACGTTCCTGGAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i macNem1.NW_012017243v1       I 20 C 0
s cerAty1.NW_012001098v1       277481 497 -   1025902 --------------gaCATGACAGC-CGGGCCTCTGAAGAGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAACCAT-AAAGGAGAGAggggggggggggggg----ggggAGAGAGAAACATT----AAAAAA-AAAAAAACAAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAAGCTCATTTCGTAGCCAAACGTTCCTGAAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGTTTAACCTTCAAAT--CAAAAATTCTCT
i cerAty1.NW_012001098v1       I 20 C 0
s chlSab2.chrUn_KE147541v1     217679 503 -    811265 --------------GACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAAAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAAACAT-AAAGGAGAGAGTGGGGG--GGGGGGCGGTGGGAAGAGAGAAACATTTaaaaaaaaa-aaaaaaaaaaaCCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGGAGAAGCTCATTTCGTAGCCAAACGTTCCTGGAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i chlSab2.chrUn_KE147541v1     I 15 C 0
s manLeu1.NW_012108508v1       247741 498 -    350446 --------------GACATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCGACGATATAA-TGATGTTTCATTAGACATGCCGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAACCAT-AAAGGAGAGAGTGGGGT--GGGGGGCGG-GGGGAGAGAGAAACATT----AAAAAA-AAAAAAACAAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTCCAGGCAGTGGC-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAAGCTCATTTCGTAGCCAAACGTTCCTGGAATCGAT----GGCGCCC--GTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGTTTAACCTTCAAAT--CAAAAATTCTCT
i manLeu1.NW_012108508v1       I 30 C 0
s colAng1.NW_012115411v1       398565 490 +   1230721 --------------gaCATGACAGC-CGGGCCTCTGAAGCGTGCCGTGGAAGACGCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCAGGTCTCGTTCAGCCCTTCGGAGAATGCCAGCCACGATATAA-TGATGTTTCATTAGACATGCTGTACACTGCACGCTCCGTATGGCACTCACAATTAAACAGAATCAT-AAAGGAGAGAGTGGAGG------------GGGGAGAGAGAAACATT----AAAAAA-AAAAAAA-AAACCCAGCTCAGATTAGCAATGCATTTAATGGGTACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGCAGTGGT-CCGGCTCG----GGGCTCTGCACACGCAATTAGCAGCATTTACA-CAATTACGCAGAGGCTCATTTCGTAGCTAAACATTCCTGGAATCGAT----GGCGCCCGTGTG---TGGCTTAGGGCAACTTCACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i colAng1.NW_012115411v1       I 691 I 316
s saiBol1.JH378345             203328 447 -    465904 --------------TATGTGGCAGC-TGTGCCTCCGAAG----------------CAGTTTCGAGGG--CGCCTGGCAGTGAAAAATAATGGGGAGACGCGTCTCTTTCGGCTCCCGCGGGGATGCCAGCCACGGTACCA-TCAGGTTTCATCAGCCACGCCGGGC-CCGCGTGCCCCGTATGGCCGCCACAATTAGACACAACCGT-GAAGCAGAGA----------------------------GAAGCGTG----AAGAAG---------TCGCCC-GCTCTGATTAGCATAGCGTGTAATTGCCAGTTCATTAGCTAATTGATTTCTTATTAGTTGCAGGCGCAGCC-TGTGCTGG----AGGCGCTGCAGACGCAATGACGGGCGGTGACAGCGAGCAGGGCGACGCTCATTTCA-GGGAAAACGTTTCCGCCCTGGAA----GCCGCCT--GCT---TTGCTTCAGGCGATTTGACTCACTTTATTTTAT-TTTTCTCGCTAATATCGGCTTAACCTTCAAAT--CAAAAATGCTCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             312586 475 +  11138919 --------------GACATGACAGC-CGGGGCTCTGAAGCGCTTGGTAGAAGACTCAGTTGTGAGAA--TGTCTGGCAATTAAAAATAATTGGGAAGCCGGTTTCACTGAGCTCTTCCAAGAATGCCAGCTACCATATAA-CGATGTTTCATTACACATGCCGAGCGCTGCAGTCTCCGTATGGCACTGACAATTAAAGAGCGTCGT-AAA----------GGGG------------CAGAAAAGAGAAACATT----AAAAAT----------ACCCCGGCTAAGATTAGCATTGCATTTAACGGCCACTTCATTAGCTAATTGATTTCTTATTAGTTACAGGGGGGGAC----GCTCGGGCAGGGCTCTGCACACGTAATTAGCAGCATTTACA-CAATTAGCAGCTTGCTCATTTTGCAGCTAAACATTCCTGGAATCGACCGCAGGCGGCT--GTG---TTGCTCAGGGCCATTTGACTCACTTTATTTTAT-TTTTCTTGCTAATATTGGCTTAACCTTCAAAT--CAAAAATTCTCT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366130 481 + 123869142 --------------TACGTGACAGCGCCCGGCTCTGAAGCGCGTGGTAGGAGACCCAGTTGTGAGAG--TGTCTGGCAATTAAAAATAATTGGGAAGCAGCTTTCGCTCAGCTCTTCCAAGAATGCCAGCTACCCTATAA-TGATGTTTCATTAGACATGCGGAAAGCTGTGCGCTCCGTATGGCAGTGGCAATTAAAGAGGATCAT-ACGGGGG------GGGG------------GAGAAAAGAGAAACATT----AAAAAT----------ACCCTGGCTGAGATTAGCATTGCATTTAATGGCCACTTCATTAACTAATTGATTTCTTATTAGTTACAGGGAGAAGCCCCGGTTAG----ACGCTCTGCACACGTAATTAGCGGCATTTACA-CAATTAGCCACTTGCTCGTTTCGCAGCTCAGCGTTCTCAGAATCGGC----CGCGGCG--GTGGCAGCGCTGTGGGCCATTTGAATCGCTTTATTTTAT-TTTTCTTGCTAATATTGGCCTAACCTTCAAATAAAAAAAATTCTCT
i canFam3.chrX                 C 0 I 68
e nomLeu3.chrX                  50782 4731 + 141252148 I

a score=27011.000000
s hg38.chrX_KI270880v1_alt     239713 4 +    284869 CCCC
s panTro5.chrX                 423088 4 + 155549662 CCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153042 4 -    177848 CCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315037 4 +    417917 CCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6225 4 -     38397 CCCC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     6377 4 +     34961 CCCC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409675 4 +  25972781 CCCC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       277978 4 -   1025902 TCCC
i cerAty1.NW_012001098v1       C 0 I 25
s chlSab2.chrUn_KE147541v1     218182 4 -    811265 CCCC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       248239 4 -    350446 TCCC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             203775 3 -    465904 -CCC
i saiBol1.JH378345             C 0 I 4
s otoGar3.GL873584             313061 4 +  11138919 CCCC
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366679 4 + 123869142 CCCC
i canFam3.chrX                 I 68 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=6600.000000
s hg38.chrX_KI270880v1_alt     239717 1 +    284869 C
s panTro5.chrX                 423092 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153046 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315041 1 +    417917 C
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6229 1 -     38397 C
i rheMac8.chrUn_NW_014831239v1 C 0 I 22
s macFas5.chrUn_AQIA01076778     6381 1 +     34961 C
i macFas5.chrUn_AQIA01076778   C 0 I 15
s macNem1.NW_012017243v1       409679 1 +  25972781 C
i macNem1.NW_012017243v1       C 0 I 20
s chlSab2.chrUn_KE147541v1     218186 1 -    811265 C
i chlSab2.chrUn_KE147541v1     C 0 I 21
s manLeu1.NW_012108508v1       248243 1 -    350446 C
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             203782 1 -    465904 C
i saiBol1.JH378345             I 4 C 0
s otoGar3.GL873584             313065 1 +  11138919 C
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366683 1 + 123869142 C
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e cerAty1.NW_012001098v1       277982 25 -   1025902 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=-16652.000000
s hg38.chrX_KI270880v1_alt     239718 15 +    284869 TGGAGT-----GG-------------GGGGGAG
s panTro5.chrX                 423093 20 + 155549662 TGGAGTGCGGGGG-------------GGGGGGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153047 16 -    177848 TGGAGT----GGG-------------GGGGGGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315042 13 +    417917 TGGAGT--------------------AGGGGGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6397  7 +     34961 --------------------------CGGGGGA
i macFas5.chrUn_AQIA01076778   I 15 C 0
s manLeu1.NW_012108508v1       248244 21 -    350446 ------------CCCACCCCCCGCCCCGGGGGA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             203783  7 -    465904 --------------------------CGGGGGG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             313066  4 +  11138919 ---------------------------AGGG--
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366684 15 + 123869142 ---------------CCGCCCAGCCGCAGG---
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218187 21 -    811265 I
e cerAty1.NW_012001098v1       277982 25 -   1025902 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6230 22 -     38397 I
e macNem1.NW_012017243v1       409680 20 +  25972781 I

a score=302712.000000
s hg38.chrX_KI270880v1_alt     239733 70 +    284869 CCTCACCAGATTTAATCACAACGTTCAACACAGAGAAACAGGC-CACGTCATCCGATCTGAGCTCAGCTAC
s panTro5.chrX                 423113 70 + 155549662 CCTCACCAGATTTAATCACAACATTCAACGCAGAGAAACAGGC-CACGTCATCCCATCTGAGCTCAGCTAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153063 70 -    177848 CCTCACCAGATTTAATCACAACATTCAACGCAGAGAAACAGGC-CACGACATCCCATCTCAGCTCAGCTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315055 70 +    417917 CCTCACCAGATTTAATCACAACCTTCAACGCAGAGAAATAGGC-CACGTCATCCCATCTGAGCTCAGCTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6252 71 -     38397 CCTCACCAGATTTAATCACCATGTTAAACGCAGAGAAACAGGCACACGTCATCCGATCAGAGCTGAGCTAC
i rheMac8.chrUn_NW_014831239v1 I 22 I 137
s macFas5.chrUn_AQIA01076778     6404 71 +     34961 CCTCACCAGATTTAATCACCATGTTAAACGCAGAGAAACAGGCACACGTCATCCGATCAGAGCTGAGCTAC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409700 71 +  25972781 CCTCACCAGATTTAATCACCATGTTAAACGCAGAGAAACAGGCACACGTCATCCGATCAGAGCTGAGCTAC
i macNem1.NW_012017243v1       I 20 I 132
s cerAty1.NW_012001098v1       278007 71 -   1025902 CCTCACTAGATTTAATCACCACGTTAAACGCAGAGAAAGAGGCACACGTCATCCGATCAGAGCTGAGCTAC
i cerAty1.NW_012001098v1       I 25 I 137
s chlSab2.chrUn_KE147541v1     218208 71 -    811265 CCTCACCAGATTTAATCACCATGTTAAACGCAGAGAAAGAGGCCCACGTCATCCGATCAGAGCTGAGCTAC
i chlSab2.chrUn_KE147541v1     I 21 I 212
s manLeu1.NW_012108508v1       248265 71 -    350446 CCTCACCAGATTTAATCACCACGTTAAACGCAGAGAAACAGGCACACGTCATCCGATCAGAGCTGAGCTAC
i manLeu1.NW_012108508v1       C 0 I 137
s saiBol1.JH378345             203790 70 -    465904 CTTCAGTGGATTTCATCGCAGCATTCAAGGCAGAGAAGTCGGT-GGCGTCCTCTGGCCCGACTGCAGCTGC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             313070 66 +  11138919 CCTAGCCAGATTTAATCACAATGTTAAATGCACAGAAATGGGC-TACGTCACCTG----GGTCTCAGCAGG
i otoGar3.GL873584             C 0 I 5
s canFam3.chrX                 366699 57 + 123869142 CCTCCCTGTATTTAATCGGGACATTAAATGCACGGGAACTGGG-GACGTCG--------GGGCAGG-----
i canFam3.chrX                 C 0 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=111336.000000
s hg38.chrX_KI270880v1_alt     239803 149 +    284869 GTCTTGTTTGCTG-TGTTTTATTTTCAGCTTGTTTTATGGCTCGCCGGAAAAAGCCAGCCGTCTTCCCCGGGGACAGTCATCTCTGGACAGGGTGCATGTCCCCCCTCACGACGTCCAATGTCACCACGG--CTGCATGTCGCACCTTGCAG
s panTro5.chrX                 423183 148 + 155549662 GTCTTGTTTGCTG-TGTTTTATTTTCAGCTTGTTTTATGGCTCTCCGGAAAAAGCCAGCCGTCTTTCCCGGGG-CAGTCATCTCTGGACAGGGTGGATGTCCCCCCTCACGACGTCCAATGTCACCACGG--CTGCATGTCGCACCTTGCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153133 149 -    177848 GTCTTGTTTGCTG-TGTTTTATTTTCAGCTTGTTTTATGGCTCTCCGGAAAAAGCCAGCCGTCTTCCCCGGGGACAGTCATCTCTGGACAGGGTGGATGTCCCCCCTCACGACGTCCAATGTCACCACGG--CTGCATGTCGCACCTTGCAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315125 148 +    417917 GTCTTGTTTGCTG-TGTTTTATTTTCAGC-TGTTTTATGGCTCTCTGGAAAAAGCCAGCCGTCTTCCCCGGGGACAGTAATCTCTGGACAGGGTGGATGTCCCCCCTCACGATGTCCAATGTCACCATGG--CTGCATGTCGCACCTTGCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6475 130 +     34961 -----------------CTTATTTTCAGCTGCTTTTATGGCTCT-GGGGAAAAGCCAGCCCCCTTGTCCAGTGACAGAAATCTCCAGAGCAGGTGGATTTGCGCCTC----ACGTCCAAGGCCAGGAGGGTTTTGCACGTTGCACTTTGCAA
i macFas5.chrUn_AQIA01076778   C 0 I 2
s saiBol1.JH378345             203860 142 -    465904 CTCTTCTTCGCCA-CATGACATTTTCAGC-TGCCTGGCTGCGTCCACGGAAAAGCCACGGGTCTTCCCGGGTGAAAATAATCTCTAGGCCACGTGGATTTCTC------GGGCTTCAGAGGGCACGAGGG--TTGCACTTTGCAACACTCAG
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             313141 132 +  11138919 GTCCTTCCTCCTGCCCCTTTGCTCTCAGCTTCTTTCATGG----------AAGCCCAACACACTTCCCTGCTGGAAACCGTCTCCGGATAGGTCGTTTTCACCAC------GCGTTGAA--CTGTTACGA--TCCTGTTTTGCAACTGGGAG
i otoGar3.GL873584             I 5 C 0
s canFam3.chrX                 366756 141 + 123869142 ATCCTTCTCTCTG-TCCTTCATTTTCTAATTCTTTAATGGGTCT---GGTGAAGCCGATCCCCGTCGCTGATGAAAATAGTCGCCGG-----GTGCTTTCTGCCCGTCCAGCTGGCGAACATGATGAGGG--TCGTGTTTTGCAACTGGCGC
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       248336 137 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e cerAty1.NW_012001098v1       278078 137 -   1025902 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6323 137 -     38397 I
e macNem1.NW_012017243v1       409771 132 +  25972781 I

a score=6976.000000
s hg38.chrX_KI270880v1_alt     239952 5 +    284869 ATGGA
s panTro5.chrX                 423331 5 + 155549662 ATGGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153282 5 -    177848 ATGGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315273 5 +    417917 ACGGA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6607 5 +     34961 ATGAG
i macFas5.chrUn_AQIA01076778   I 2 C 0
s macNem1.NW_012017243v1       409903 5 +  25972781 ATGGG
i macNem1.NW_012017243v1       I 132 C 0
s saiBol1.JH378345             204002 5 -    465904 ATGCC
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             313273 5 +  11138919 ACAAG
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366897 5 + 123869142 ACGGA
i canFam3.chrX                 C 0 I 1
e manLeu1.NW_012108508v1       248336 137 -    350446 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e cerAty1.NW_012001098v1       278078 137 -   1025902 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6323 137 -     38397 I

a score=86425.000000
s hg38.chrX_KI270880v1_alt     239957 21 +    284869 CAGCTGTAGGCCTGACCACAC
s panTro5.chrX                 423336 21 + 155549662 CAGCTGTAGGCCTGACCACAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153287 21 -    177848 CAGCTGTAGGCCTGACCACAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315278 21 +    417917 CAGCCGTAGGCCTGACCACAC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6460 21 -     38397 CAGCTGGACGCCTGACCACAC
i rheMac8.chrUn_NW_014831239v1 I 137 C 0
s macFas5.chrUn_AQIA01076778     6612 21 +     34961 CAGCTGGACGCCTGACCACAC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409908 21 +  25972781 CAGCTGGACGCCTGACCACAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       278215 21 -   1025902 CAGCTGGACGCCTGACCACAC
i cerAty1.NW_012001098v1       I 137 C 0
s manLeu1.NW_012108508v1       248473 21 -    350446 CAGCTGGACGCCTGACCACAC
i manLeu1.NW_012108508v1       I 137 C 0
s saiBol1.JH378345             204007 21 -    465904 CACGCGTGAGCGTGACCACAC
i saiBol1.JH378345             C 0 n 0
s otoGar3.GL873584             313278 20 +  11138919 CAGATGTTGGTTTGAGCACA-
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366903 21 + 123869142 CGGCTGTAAGCTAGACCACAC
i canFam3.chrX                 I 1 C 0
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=22739.000000
s hg38.chrX_KI270880v1_alt     239978 10 +    284869 --CTGTCTTTAA
s panTro5.chrX                 423357 10 + 155549662 --CTGTCTTTAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153308 10 -    177848 --CTGTCTTTAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315299 10 +    417917 --CTGCCTTTAA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6481 10 -     38397 --CTGTCTTTAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778     6633 10 +     34961 --CTGTCTTTAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409929 10 +  25972781 --TTGTCTTTAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       278236 10 -   1025902 --CTGTCTTTAA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       248494 10 -    350446 --CTGTCTTTAA
i manLeu1.NW_012108508v1       C 0 I 46
s otoGar3.GL873584             313298  6 +  11138919 ---TGGCAT---
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 366924 10 + 123869142 ATCTCTCTCT--
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=9701.000000
s hg38.chrX_KI270880v1_alt     239988 7 +    284869 ATGCTTC--
s panTro5.chrX                 423367 7 + 155549662 ATGCTTC--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153318 7 -    177848 ATGCTTC--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315309 7 +    417917 ATGCCTC--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1   6491 7 -     38397 ATCCTTC--
i rheMac8.chrUn_NW_014831239v1 C 0 I 8858
s macFas5.chrUn_AQIA01076778     6643 7 +     34961 ATCCTTC--
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       409939 7 +  25972781 ATCCTTC--
i macNem1.NW_012017243v1       C 0 I 72
s cerAty1.NW_012001098v1       278246 7 -   1025902 ATCCTTC--
i cerAty1.NW_012001098v1       C 0 I 39
s otoGar3.GL873584             313304 3 +  11138919 ----CTC--
i otoGar3.GL873584             C 0 I 1
s canFam3.chrX                 366934 7 + 123869142 --GCGTTAT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       248504 46 -    350446 I
e saiBol1.JH378345             204028 0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I

a score=10156.000000
s hg38.chrX_KI270880v1_alt     239995 56 +    284869 TTGGGGTGGT---------------------------------GGGGGGAGGGGGAAGTTTGC--------AGAGGTCTGAAATTCACAGGTAACCG
s panTro5.chrX                 423374 46 + 155549662 T--GGGTGG-----------------------------------------GGGGGAGGTGTGC--------GGAGGTCTGAAATTCACAGGTAGCCG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153325 46 -    177848 T--GGGTGG-----------------------------------------GGGGGAGGTGTGC--------GGAGGTCTGAAATTCACAGGTAGCCG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315316 46 +    417917 G--AGGTGG-----------------------------------------GGGGGAAGTGTGC--------GGAGGTCTGAAATTCACAGGTAGCCG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6650 39 +     34961 --------------------------------------------------ACGGAGGGTGTGC--------AGAGGTCTGACGTTCACGTGCAGGCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s otoGar3.GL873584             313308 36 +  11138919 -----------------------------------------------------CAGGGGCTGT--------GGGGGTCTGAGATTTGGGCTTGGAGG
i otoGar3.GL873584             I 1 I 1
s canFam3.chrX                 366941 88 + 123869142 ---------TTTCTATTTTTTGGCTTTTTTTTTTTTTTTTTGCTGAAGTCTTGGGGAGCGTGCCTGGGGCGGGGCGTCTGGCACTTGGATGTCCCCG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       248504 46 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218279 212 -    811265 I
e cerAty1.NW_012001098v1       278253 39 -   1025902 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       409946 72 +  25972781 I

a score=26258.000000
s hg38.chrX_KI270880v1_alt     240051 12 +    284869 --TCTCTCTCCATG
s panTro5.chrX                 423420 12 + 155549662 --TCTCTCTCCATG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153371 12 -    177848 --TCTCTCTCCATG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315362 12 +    417917 --TCTCTCTGCATG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6689 12 +     34961 --TCTCTCTCCAGG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       278292 12 -   1025902 --TCTCTCTCCAGG
i cerAty1.NW_012001098v1       I 39 C 0
s chlSab2.chrUn_KE147541v1     218491 12 -    811265 --TCTCTCTCCACG
i chlSab2.chrUn_KE147541v1     I 212 C 0
s manLeu1.NW_012108508v1       248550 12 -    350446 --TCTCTCTCCACG
i manLeu1.NW_012108508v1       I 46 C 0
s canFam3.chrX                 367029 12 + 123869142 TTTCTTCTCCCA--
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313344  1 +  11138919 I
e colAng1.NW_012115411v1       399055 316 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       409946 72 +  25972781 I

a score=40930.000000
s hg38.chrX_KI270880v1_alt     240063 22 +    284869 GCACAGAAATGGATTGCGAACT---
s panTro5.chrX                 423432 22 + 155549662 GCACAGACATGGATTGCGTACT---
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153383 22 -    177848 GCACAGACATGGATTGCGTACT---
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315374 22 +    417917 GCACAGAAATGGATTGCATACT---
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6701 21 +     34961 GCACAGAAAGGGATTTGGTGC----
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       278304 21 -   1025902 GCACAGAAAGGGATTTCGTGC----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     218503 21 -    811265 GCACAGAGAGGGATTTCGTGC----
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       248562 21 -    350446 GCACAGAAAGGGATTTCATGC----
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       399371 21 +   1230721 GCACAGAAACGGATTTCGTAC----
i colAng1.NW_012115411v1       I 316 C 0
s otoGar3.GL873584             313345 18 +  11138919 ---CAGAGATGTATTTGGTAA----
i otoGar3.GL873584             I 1 I 1
s canFam3.chrX                 367041 24 + 123869142 ACGTGGAAATGCACCTGCTGG-GAA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       409946 72 +  25972781 I

a score=155068.000000
s hg38.chrX_KI270880v1_alt     240085 34 +    284869 GGCGTCGGCCACGGAGAGGCTGCTTGGACCTCAG
s panTro5.chrX                 423454 34 + 155549662 GGCACCAGCCACGGAGAGGCTGCTTGGACCTCAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153405 34 -    177848 GGCACCGGCCACGGAGAGGCTGCTTGGACCTCAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315396 34 +    417917 GGCATCGGCCACGGAGAGGCTGCTCGGACCTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6722 34 +     34961 GGCGTCGGCGGCGGAGAAGCTGCTTGGACCTCAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       410018 34 +  25972781 GGCGTCGGCGGCGGAGAAGCTGCTTGGACCTCAG
i macNem1.NW_012017243v1       I 72 I 7697
s cerAty1.NW_012001098v1       278325 34 -   1025902 GGCGTCGGCCGCGGAGAAGGTGCTTGGACCTCAG
i cerAty1.NW_012001098v1       C 0 I 9745
s chlSab2.chrUn_KE147541v1     218524 34 -    811265 GGCGTCGGCCGCGGAGAAGCTGCTTGGACCTCAG
i chlSab2.chrUn_KE147541v1     C 0 I 6130
s manLeu1.NW_012108508v1       248583 34 -    350446 GGCGTCGGCCGCGGAGAAGGTGCTTGGACCTCAG
i manLeu1.NW_012108508v1       C 0 I 11935
s colAng1.NW_012115411v1       399392 34 +   1230721 GGCGTCGGCCACCGAGAAGCTGCTTGGACCTCAG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             313364 33 +  11138919 -GGGCTGGCCATGGACAAGCTGATGGAACCTCAG
i otoGar3.GL873584             I 1 I 137
s canFam3.chrX                 367065 31 + 123869142 ---GCTGGCAGCGGGGACGCCATTCTGACCTCAG
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I

a score=10541.000000
s hg38.chrX_KI270880v1_alt     240119 17 +    284869 TGTAGGATTACTTTTGG
s panTro5.chrX                 423488 17 + 155549662 TGTAGGATTACGTCTGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153439 17 -    177848 TGTAGGATTACGTCTGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315430 17 +    417917 TGTAGGATTACTTCTGG
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6756 12 +     34961 GGAAGGATGACC-----
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       399426 17 +   1230721 GGGAGGATGACTTTTGG
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 367096 17 + 123869142 CAAACGCTTTCTCGTGG
i canFam3.chrX                 C 0 I 87
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313397 137 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=1820.000000
s hg38.chrX_KI270880v1_alt     240136 2 +    284869 TT
s panTro5.chrX                 423505 2 + 155549662 TT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153456 2 -    177848 TT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315447 2 +    417917 TT
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       399443 2 +   1230721 TT
i colAng1.NW_012115411v1       C 0 I 4700
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028 0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313397 137 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     6768 0 +     34961 C

a score=74918.000000
s hg38.chrX_KI270880v1_alt     240138 140 +    284869 ATACGATATTTTATAAGCATATATAATTTGGTTTTCTGATTTTGGGtttttt-gttttatttattta-----ttatttatttatatatgatttattatttatttg---attatttatttatta-------tcttatttactta-------tttatttatttaA-------
s panTro5.chrX                 423507 143 + 155549662 ATATTATATTTTATAAGCGTATATAATTTGGTTTTCTGATTTTGGGtttttt-gttttatttattta-----ttatttatttatatatgatttattatttatttgattattatttatttatta-------tcttatttattta-------tttattcatttaa-------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153458 138 -    177848 Atattatattttataagcatatataatttggttttctgattttgggtttttt-gttttatttattta-----ttatttatttatatatgatttattatttatttgattattacttatttatta-------tcttattta------------ttatttatttaA-------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315449 148 +    417917 ATATTACATTTTATAAGCATACATAATTTGGTTTTCTGATTTTGGGGttttt-g-tttatttattta-----ttattta-ttatatatgatttattatttatttgattattatttatttatta-------tcttatttacttatttattttttatttgtttaa-------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6768 141 +     34961 --------------------------CTTGGTTTTCTGGTTTCGGGGTTTTTCGTTTTATTTATTTATTTACTTGTTGATTTATTGATTACTTATTACTTATTGA--TTTTATGGATTTATTAATGTATTTGTTATTTATATA-TTATTGTTTATTTATTTATTATATAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 367113  87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313397 137 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       399445 4700 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=11490.000000
s hg38.chrX_KI270880v1_alt     240278 8 +    284869 tttttttt
s panTro5.chrX                 423650 8 + 155549662 tttttttt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153596 8 -    177848 tttttttt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315597 8 +    417917 tttttttt
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     6909 8 +     34961 TTGTTTAT
i macFas5.chrUn_AQIA01076778   C 0 I 1159
s colAng1.NW_012115411v1       404145 8 +   1230721 tttttttt
i colAng1.NW_012115411v1       I 4700 C 0
s otoGar3.GL873584             313534 8 +  11138919 tttatttt
i otoGar3.GL873584             I 137 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028 0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=132616.000000
s hg38.chrX_KI270880v1_alt     240286 114 +    284869 t----ctgagacggag-----tctcgctc-tgtcgcccaggctggagtgcggtggcgcgatctcggctcactgcaagctccgcctctcgggttcacgccattctcctgcctcagcctcccgagt
s panTro5.chrX                 423658 113 + 155549662 t-----tgagacggag-----tctcaccc-tgtcgcccaggttggagtgcagtggcacgatctcggctcactgcaagctccgcctctcgggttcacgccattctcctgcctcagcctccagaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153604 114 -    177848 t----ttgagacggag-----tctcaccc-tgtcgcccaggttggagtgcagtggcacgatctcggctcactgcaagctccgcctctcgggttcacgccattctcctgcctcagcctccagaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315605 118 +    417917 tttttttgagacacag-----tctcaccc-tgtcgcccaggctggactgcagtggcgcgatcttggctcactgcaacctccgcctcccgggttcacgccatcctcctgcctcagcctccagaga
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     8076 115 +     34961 ----tttgagatggag-----tttcactcttgttgcccaggctgcagtgcagtggctcgatctcagctcactgcaacctccgtctcccgggttcaaacgattctcctgcctcagcctcctgagt
i macFas5.chrUn_AQIA01076778   I 1159 C 0
s colAng1.NW_012115411v1       404153 115 +   1230721 ----tttgagatggaa-----tttcactcttgttgcccaggctggagtgcaatggcaccatctcagctcagtgaaacctccgtctcctgggttcaaacaattctcttgcctcagtctcctgagt
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             313542 110 +  11138919 ----tttgagatagggtctcatctcactc-tcacaccagagctagagtgcagaggcatcatcacagctcacagtagcctcaaactcctagg--ccagtggtt-------ctcaaccttcccaat
i otoGar3.GL873584             C 0 I 57
e canFam3.chrX                 367113  87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=46188.000000
s hg38.chrX_KI270880v1_alt     240400 40 +    284869 agctgggactacaggtgcccgccaccacgcccggctaatg
s panTro5.chrX                 423771 40 + 155549662 agctgggactacaggcgcccgccaccacgccaggctaatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153718 40 -    177848 agctgggactacaggcgcccgccaccacgccaggctaatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       315723 40 +    417917 agctgggactacaggcgcccgccaccacgcccggctaatg
i gorGor5.CYUI01015925v1       C 0 I 593
s macFas5.chrUn_AQIA01076778     8191 40 +     34961 aactggaatcacaggcgcccgctaccacgcctggctaatt
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404268 40 +   1230721 agctggaattacaggcacgcactaccatgcctggctaatt
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313652 57 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=57775.000000
s hg38.chrX_KI270880v1_alt     240440 54 +    284869 tttgtatttttagtagagacggggtttcaccgtgttggccaggctggtctcgat
s panTro5.chrX                 423811 54 + 155549662 tttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 153758 54 -    177848 tttgtatttttagtagagacggggtttcaccgtgttggtcaggctggtctcgaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       316356 54 +    417917 tttgtacttttagtagatacgtggttttgctatgttggccaggctggtctcgaa
i gorGor5.CYUI01015925v1       I 593 C 0
s macFas5.chrUn_AQIA01076778     8231 54 +     34961 tttgcatttttagtagagatgctatttctccatgttggccaggctggtcttgaa
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404308 54 +   1230721 tttgcatttttagtacagatgctatttctccctgttgcccaggctggtcttgaa
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313652 57 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=46458.000000
s hg38.chrX_KI270880v1_alt     240494 30 +    284869 ctcctgacctcaggtcatccgcccgcctcg
s panTro5.chrX                 423865 30 + 155549662 ctcctgacctcaggtcatccgcccgcctcg
i panTro5.chrX                 C 0 I 1200
s panPan2.chrUn_NW_014024190v1 153812 30 -    177848 ctcctgacctcaggtcatccgcccgcctcg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       316410 30 +    417917 ctcccgacctcaggtcatccgcccgcctcg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     8285 30 +     34961 ctcctgacctcaggtgatccacccacctcg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404362 30 +   1230721 ctcctgacctcaggtcatcggcccacctcg
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             313709 30 +  11138919 ctcctaggcgcaagtgattctcctgcctca
i otoGar3.GL873584             I 57 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=59166.000000
s hg38.chrX_KI270880v1_alt     240524 37 +    284869 gcctcccaaagtgctgggattacaggcatgagccacc
s panTro5.chrX                 425095 37 + 155549662 gcctcccaaagtgctgggattacaggcatgagccacc
i panTro5.chrX                 I 1200 C 0
s panPan2.chrUn_NW_014024190v1 153842 37 -    177848 gcctcccaaagtgctgggatgacaggcgtgagctacc
i panPan2.chrUn_NW_014024190v1 C 0 M 1173
s gorGor5.CYUI01015925v1       316440 37 +    417917 gcctcccaaagtgctgggattacaggaatgagccacc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     8315 37 +     34961 gcctcccaaagtgctgagatgacaggcgtgagccacc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404392 37 +   1230721 gcctcccaaagtgctgagatgacaggcatgagccacc
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             313739 35 +  11138919 ggctcccagagtgctgagattacagg--tgagtcaat
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=11664.000000
s hg38.chrX_KI270880v1_alt     240561 12 +    284869 atgctgggccTG
s panTro5.chrX                 425132 12 + 155549662 atgctgggcctg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       316477 12 +    417917 gtgctgagcctg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     8352 12 +     34961 gtgctgggccTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404429 12 +   1230721 gtgccgggcTTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             313774 12 +  11138919 gttcccggcTTG
i otoGar3.GL873584             C 0 I 2440
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=139829.000000
s hg38.chrX_KI270880v1_alt     240573 179 +    284869 TTCCTTTTGttttt-attttttctagagatgggggtcttgctgtgttgcccaggctggtcttgaactcctggcctcgagccatcctcccacctcagcctcccaaagtgttgggatggtgggcacgagacaccatgcccggccCCAGATGATGTTTTAAAATGACTTCTGTGGGTGGCTTA
s panTro5.chrX                 425144 179 + 155549662 ttccttttgttttt-aatttttctagagatgggggtcttgctgtgttgcccaggctggtcttgaactcctggcctggagccatcctcccacctcagcctcccaaagtgttgggatggtgggcacgagacaccatgcctggccCCAGATGATGTTTTAAAATGACTTCTGTGGGTGGCTTA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       316489 180 +    417917 ttccttttgtttttaattttttctagagaagggggtcttgctgtgttgcccaggctggtcttgaactcctggcctcgagccatcctcccacctcagcctcccaaagtgttgggatggtgggcacgagacaccatgcccggccCCAGATGATGTTTTAAAATGACTTCTGTGGGTGGCTTA
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778     8364 170 +     34961 TTCCTTCTGttttt-aatttttctagagat-ggggtcttgctgtgttgcccaggctggtcttcaactcctggcctcaagccatcctcccacctcagcctcccagagcgttaggattatgggtacgagccactgtgcccgg--ccAGATGATGTTTTAAAATGACTC------gtggctca
i macFas5.chrUn_AQIA01076778   C 0 I 4988
s colAng1.NW_012115411v1       404441 176 +   1230721 TTCCTTTTGttttt-aatttttctagagat-ggggtcttgctgtgttgcccaggctggtcttcaactcctggcctcaagccatcctcccacctcagcctcccagagcattacgattatgggtacgagccactgtgcccgg--ccAGACGATGTTTTAAAATGACTTCTCTGGGTGGCTTA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367113  87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=36846.000000
s hg38.chrX_KI270880v1_alt     240752 71 +    284869 TCCAGAAGGAGTTTGAATTTTAGGGAAGCAGAACCCTAGGCCAACTCTGATTCAAAGATTAGACGATTGCC
s panTro5.chrX                 425323 71 + 155549662 TCCAGAAGGAGTTTGAATTTTAGGGAAGCAGAACCCTAGGCCAACTCTTATTCAAAGATTAGACGATTGCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       316669 71 +    417917 TCCAGAAGGAGTTTGAATTTTAGGGAAGCAGAACCCTAGGCCAACTCTGATTCAAAGATTAGACGATTGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       404617 71 +   1230721 CCCAGAAGGAGTTTGAATTTTAGGGAAGCAGAACTGTAGGCCAACTCTGATTCAAAGATTAGGTGATCGCC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367113 87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=71785.000000
s hg38.chrX_KI270880v1_alt     240823 301 +    284869 ttttgttgtt-----------ttttttaagacggagtctcgctgtgtcgcccaggccggagtgcagtggcaccatctcggctcactgcaagctccgcctctggggttcacaccattctcctgcctcagcatcccgagtagctgggactacaggcacccgccacctcgcccggctaattgtttgtatttttagtagagacagggtttcaccgtgttagccgggatggtctcgatctcctgacctcatgatccaccagcctcggcctcccaaagtgctgggatgccaggcgttagccaccgcgcccggccGCCT
s panTro5.chrX                 425394 312 + 155549662 ttttgttgttgttgttgttttttctttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccagctaattgtttgtatttttagtagagatggagtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccaccagcctcggcctcccaaagtgctgggatgacaggcgtgagccaccatgcccggccGCCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       316740 299 +    417917 TTCTGTAGtt-----------ttttttgagacggagtctcgctctgtca-ccaggctggagtgcagtggcgcgatctcgg-tcactgcaagctccgcctcccgggttcacgccatcctcctgcctcagcctcccgagtagctgggactacaggcacccaccactacacccgactaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatgatcttgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggcTGCCT
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 367113  87 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       404688   0 +   1230721 C
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=2660.000000
s hg38.chrX_KI270880v1_alt     241124 7 +    284869 TCTATTG
s panTro5.chrX                 425706 7 + 155549662 TCTTTTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       317039 7 +    417917 TCTATTG
i gorGor5.CYUI01015925v1       C 0 C 0
s canFam3.chrX                 367200 7 + 123869142 TTTGTTG
i canFam3.chrX                 I 87 C 0
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028 0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       404688 0 +   1230721 C
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=11330.000000
s hg38.chrX_KI270880v1_alt     241131 23 +    284869 TTTTAAATTTTGCA--GAATCTCAG
s panTro5.chrX                 425713 23 + 155549662 TTTTAAATTTTGCA--GAATCTGAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       317046 23 +    417917 TTTTAAATTTTGCA--GAATCTCAA
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       404688 24 +   1230721 TTTTACATTTTGCA-GGAGTCTCTG
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 367207 25 + 123869142 CCTGATGTTTTGCACGGACTCTCAG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I
e panPan2.chrUn_NW_014024190v1 153879 1173 -    177848 M

a score=97494.000000
s hg38.chrX_KI270880v1_alt     241154 102 +    284869 TCATGGGAGGCCACCCTCTTTGTG------GGGGTGATCGAGGGTG-TTTGCTGTATGGACGAAGGTGTGGATGAAAATGTTTCCATTTGAAGACACTCACGGACAGTC
s panTro5.chrX                 425736 102 + 155549662 TCATGGGAGGCCACCCTCTTTGTG------GGGGTGATCGAGGGTG-TTTGCTGTATGGACAAACGTGTGGATGAAAATGTTTCCATTTGAAGACACTCACGGACAGTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155067 102 -    177848 TCATGGGAGGCCACCCTCTTTGTG------GGGGTGATCGAGGGTG-TTTGCTGTATGGACAAACGTGTGGATGAAAATGTTTCCATTTGAAGACACTCACGGACAGTC
i panPan2.chrUn_NW_014024190v1 M 1173 C 0
s gorGor5.CYUI01015925v1       317069 102 +    417917 TCATGGGAGGCCACCCTCTTTGTG------GGGGTGATTGAGGGTG-TTTGCTGTATGGACGAAGGTGTGGATGAAAATGTTTCCATTTGAAGACACTCACGGACAGTC
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       404712 103 +   1230721 TCATGGGAGGTCACCCTCTTGGTG------GGGGCGATTGAGGGTGTTTTGCTGCAGGGATGAGGGTGTGGATGAAACTGCTTCCATTTTAAGACATTCAGGGACAGTC
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 367232 101 + 123869142 TCATGGAAGAT-------TTGATGGAGACAGAGGTGATCTGAGGTC-TTCACAGCACGGATGACACTGTGGATGAAAAGGGTTAAGTGTCACGATACTCGGGGTCAGTC
i canFam3.chrX                 C 0 I 3062
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I

a score=47528.000000
s hg38.chrX_KI270880v1_alt     241256 60 +    284869 AATGGGCTGAATTCTGCCCCCCGCCTCACAAGACTCATGTATTGACAACCTAACGTCGAg
s panTro5.chrX                 425838 60 + 155549662 AatgggctgaattctgccccccgcctcacaagattcatgtattgacaacctaacctcGAg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155169 60 -    177848 AatgggctgaattctgccccccgcctcacaagattcatgtattgacaacctaacctcGAg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       317171 59 +    417917 AATGGGCTGAATTCTG-CCCCCGCCTCACAAGACTCATGTGTTGACAACCTAACCTCAAg
i gorGor5.CYUI01015925v1       C 0 C 0
s colAng1.NW_012115411v1       404815 60 +   1230721 AAAGGGCTGAATTCTCTCCCCCACCTCACAAGACTCACGTATTGACAAGCTAACGTTGAg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778     8534 4988 +     34961 I

a score=18292.000000
s hg38.chrX_KI270880v1_alt     241316 15 +    284869 gccgggcgcggtggc
s panTro5.chrX                 425898 15 + 155549662 gccgggcgcggtggc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155229 15 -    177848 gccgggcgcggtggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       317230 15 +    417917 gccgggcacggtggc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    13522 15 +     34961 gctgggcgtggtggc
i macFas5.chrUn_AQIA01076778   I 4988 C 0
s colAng1.NW_012115411v1       404875 15 +   1230721 gcggggcgccgtggc
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  50782 4731 + 141252148 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=130885.000000
s hg38.chrX_KI270880v1_alt     241331 103 +    284869 tcaagcctataatcccagcactttgggaggctgaggcaggcggatca--caaggtcaggagttcaaga-------------------------------ccagcctggccaagatggtgaaaccctgtct----ctacta
s panTro5.chrX                 425913 103 + 155549662 tcacgcctataatcccagcactttgggaggctgaggcaggcggatca--caaggtcaggagttcaaga-------------------------------ccagcctggccaagatggtgaaaccctgtct----ctacta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155244 103 -    177848 tcacgcctataatcccagcactttgggaggctgaggcaggcggatca--caaggtcaggagttcaaga-------------------------------ccagcctggccaagatggtgaaaccctgtct----ctacta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       317245 103 +    417917 tcacgcctgtaatcccagcactttgggaggctgaggcaggcggatca--caaggtcaggagttcaaga-------------------------------ccagcctggctaagatggtgaaaccctgtct----ctacta
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  55513 105 + 141252148 tcatgtctgtaatccgagcactttgggaggccaagcagcgtggatcatttgaggtcaggagttagaca-------------------------------ccagcctggccaacatagtgaaacctggtct----ctgcta
i nomLeu3.chrX                 I 4731 C 0
s macFas5.chrUn_AQIA01076778    13537 140 +     34961 tcacgcctgtaatcccagcccctcgggtgactgaggcacaagaatcgcttgaacctaggagatggaggctgcagtgagctgagatcatactcccgcactccagcctgggcaacggactaaaactctgtctgaaacaaaca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404890 105 +   1230721 tcatgcttgtgatcccagcactttgggaggctgagtcaggtggatcacctgagctcaggagtttgaga-------------------------------ccagcctggccaacatggagaaaccccatct----ctacta
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e otoGar3.GL873584             313786 2440 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=23237.000000
s hg38.chrX_KI270880v1_alt     241434 28 +    284869 aaaatac-aaaaTTAgccc---------------------ggcgtggtgg
s panTro5.chrX                 426016 28 + 155549662 aaaatac-aaaaTTAgccc---------------------ggcgcggtgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155347 28 -    177848 aaaatac-aaaaTTAgccc---------------------ggcgcggtgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       317348 28 +    417917 aaaatac-gtaattagcca---------------------ggcgtggtgg
i gorGor5.CYUI01015925v1       C 0 I 3093
s nomLeu3.chrX                  55618 29 + 141252148 caaaaacaaaaatcagccg---------------------ggcgtggtgc
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    13677 50 +     34961 aacaaacaaaaaaaCCCCACAATATAAAGATTATTAATTTGCCATAGTGt
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       404995 29 +   1230721 aaaatacaaaaatgtgccg---------------------ggcgtggtgg
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             316226 29 +  11138919 aaagctcaaactctggcca---------------------ggcatggagg
i otoGar3.GL873584             I 2440 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=21276.000000
s hg38.chrX_KI270880v1_alt     241462 20 +    284869 ctcacgcctgtcatcccagc
s panTro5.chrX                 426044 20 + 155549662 ctcacgcctgtaatcccagc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155375 20 -    177848 ctcacgcctgtaatcccagc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s nomLeu3.chrX                  55647 20 + 141252148 ctcacgcctgtaatcccagc
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    13727 19 +     34961 catgc-tgtgtaattgcagt
i macFas5.chrUn_AQIA01076778   C 0 C 0
s colAng1.NW_012115411v1       405024 20 +   1230721 cgggcacctgtcatcccagc
i colAng1.NW_012115411v1       C 0 I 13287
s otoGar3.GL873584             316255 20 +  11138919 ctcatgcctatattcccagc
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e gorGor5.CYUI01015925v1       317376 3093 +    417917 I

a score=158589.000000
s hg38.chrX_KI270880v1_alt     241482 289 +    284869 actttgggaggccgaggcgggtggatcacctgaggtcaggagttggaga-------------------------------ccagcctaatcaacatggaggaactgcatctct-------actaaaa-----------atacaaaaatta-------gcca--ggcgtggtggcgggcgcctgtaatccc-agctactcaggaggctggggcaggagagttgcttgaacctgggagatggaggttgcagtgaggtgagatcgcacaattgcagtccagc-------------------------------ctgagaaataa------------------------------gggcgaaac--------------------tccctcttaaaaaaaaaaaaaa-aaaaaCCCA-------------------CAAAAAACAG--------ACATCAGC
s panTro5.chrX                 426064 281 + 155549662 actttgggaggccgaggcaggtggatcacctgaggtcaggagttggaga-------------------------------ccagcctaatcaacatggagaaactgcatctct-------actaaaa-----------atacaaaaatta-------gcca--ggcgtggtggtgggcgcctgtaatccc-agcgactcaggaggctggggcaggagagttgcttgaacctgggagatggagtttgcagtgaggtgagatcgcacaattgcagtccagc-------------------------------ctgagaaacaa------------------------------gggcgaaac--------------------tacctcttaaaaaaaaaaC---------CCCA-------------------CAAAAAACAG--------ACATCAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155395 281 -    177848 actttgggaggccgaggcaggtggatcacctgaggtcaggagttggaga-------------------------------ccagcctaatcaacatggagaaactgcatctct-------actaaaa-----------atacaaaaatta-------gcca--ggcgtggtggtgggcgcctgtaatccc-agcgactcaggaggctggggcaggagagttgcttgaacctgggagatggagtttgcagtgaggtgagatcgcacaattgcagtccagc-------------------------------ctgagaaacaa------------------------------gggcgaaac--------------------tacctcttaaaaaaaaaaC---------CCCA-------------------CAAAAAACAG--------ACATCAGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s nomLeu3.chrX                  55667 423 + 141252148 tccttgggaggctgagtcacaagaatcgcttgaacccaggaggtggagggtgcagtgagctgaggttgtactcttgtactccagcctgggcgac------ggactgcaactctgtctgaaattaaaacaaGCCTCACGAtataaagattattaatttgccatgggtgtggtggtgcatgcctgtcgtccc-agctactcggggtgctgaaggagaagaatgatttgaggccagaagtttggggctgcagtgagccgtgatcgtgccaccgcactctagcAATTTGGGACGTTATTAAATCCACCTGGTCTTTGAGAAATTATTAAATCCATCTGCTCTGTGATGCTACACGTAACGAAATACCTGCCAAGAAGTTAAGCATCCCATCTaagtaaaaaagaaagaaagaaaga-------------------aagaaaACAG--------ACATCAGT
i nomLeu3.chrX                 C 0 I 85
s macFas5.chrUn_AQIA01076778    13746 346 +     34961 gcttccagaatctgacacaggaggatgacttgaggccaggactttgaga-------------------------------ccagcctgggtaccatagcaagaccctatctct-------atagaaa-----------gtcaacaaatta-------cctg--ggcatggtggcgcatgtctgtagtccc-agctactcggggtgctgaaggggaaggatgatttgaggccagaagtttggggctgcagtgagccgtgatcgtgccactgcaccccagcAAT----------------------------TCGAGAAATTATTAAATCCATCTGGTCTTTGATGCTACACATAACAAAATACCCGCCGAGAGATTAAGCATCCCATCCAAGTaaaaaacaaacaaacaaaca----------------aacaaaaaaacaG--------GCATCAGT
i macFas5.chrUn_AQIA01076778   C 0 I 75
s otoGar3.GL873584             316275 313 +  11138919 aatttgtaagagtaaggtggaaggatcccttgaggtcaggagttcaaga-------------------------------ccagcctgagaaag--agtaagaccccatactt-------acaaaaa-----------atagaaaaatta-------gctg--ggggttgtggcaggtacctgtagtcctaagctacacaagaggctgaggcaggaggatggcttgagcccaggagtttgaggttgctgtgagctacgatgtcatcactgcagtctacc-------------------------------tggggcaata-------------------------------gaacaaact----------------------ctgtttcaacaaaagaagaataaGTGATTATTCTTTTATGCTTCTGAGTTAAGAGACAGCTTGTTATGCAGCAGT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028   0 -    465904 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e gorGor5.CYUI01015925v1       317376 3093 +    417917 I

a score=7434.000000
s hg38.chrX_KI270880v1_alt     241771 38 +    284869 AGGCCAGAACTAGAAGTCCATT-----------------------------CGTAAACAGCATAGCA----
s panTro5.chrX                 426345 38 + 155549662 AGGCCAGAACTAGAAGTCCATT-----------------------------CGTAAACAGCATAGCA----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155676 38 -    177848 GGGCCAGAACTAGAAGTCCATT-----------------------------CGTAAACAGCATAGCA----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             316588 71 +  11138919 AGCTGACTACTACAAGCTAATTTGGAAGTCTCTGAGCCACACTTTCAATCCCATCAACAGGAAAACTAAGA
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  56090 85 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e macFas5.chrUn_AQIA01076778    14092 75 +     34961 I
e gorGor5.CYUI01015925v1       317376 3093 +    417917 I

a score=2424.000000
s hg38.chrX_KI270880v1_alt     241809 13 +    284869 TGT---T-AAAATAATT
s panTro5.chrX                 426383 13 + 155549662 TGT---T-AAAATAATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155714 13 -    177848 TGT---T-AAAATAATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    14167 13 +     34961 agt---tgaagaccat-
i macFas5.chrUn_AQIA01076778   I 75 C 0
s otoGar3.GL873584             316659 16 +  11138919 CGTGCAT-AAAACAACT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e nomLeu3.chrX                  56090 85 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I
e gorGor5.CYUI01015925v1       317376 3093 +    417917 I

a score=-1300.000000
s hg38.chrX_KI270880v1_alt     241822 1 +    284869 -c
s panTro5.chrX                 426396 1 + 155549662 -c
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155727 1 -    177848 -c
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320469 1 +    417917 -c
i gorGor5.CYUI01015925v1       I 3093 C 0
s macFas5.chrUn_AQIA01076778    14180 1 +     34961 -c
i macFas5.chrUn_AQIA01076778   C 0 C 0
s otoGar3.GL873584             316675 1 +  11138919 A-
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028 0 -    465904 I
e nomLeu3.chrX                  56090 85 + 141252148 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=11823.000000
s hg38.chrX_KI270880v1_alt     241823 11 +    284869 cagcctggacc
s panTro5.chrX                 426397 11 + 155549662 cagcctgggcc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155728 11 -    177848 cagcctgggcc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320470 11 +    417917 cagcctggtca
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56175 11 + 141252148 cagcctggcca
i nomLeu3.chrX                 I 85 C 0
s macFas5.chrUn_AQIA01076778    14181 11 +     34961 caacctgatca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s otoGar3.GL873584             316676 10 +  11138919 -aggttgagcc
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e manLeu1.NW_012108508v1       248617 11935 -    350446 I
e saiBol1.JH378345             204028  0 -    465904 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e cerAty1.NW_012001098v1       278359 9745 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I
e macNem1.NW_012017243v1       410052 7697 +  25972781 I

a score=93783.000000
s hg38.chrX_KI270880v1_alt     241834 31 +    284869 acatggcaaaacc---------ccgtctcta----ctaaaaatg
s panTro5.chrX                 426408 31 + 155549662 acatggcaaaacc---------ccgtctcta----ctaaaaatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155739 31 -    177848 acatggcaaaacc---------ccgtctcta----ctaaaaatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320481 31 +    417917 acatggtgaaacc---------tagtctcta----ctaaaaata
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56186 31 + 141252148 acatggcgaaacc---------ccatctcta----ctaaaaata
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    14192 31 +     34961 acatggtgaaacc---------ccatctcta----ctaaaaata
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417749 31 +  25972781 acatggtgaaacc---------ccatctcta----ctaaaaata
i macNem1.NW_012017243v1       I 7697 C 0
s cerAty1.NW_012001098v1       288104 31 -   1025902 acatggtaaaacc---------ccatctcta----ctaaaaata
i cerAty1.NW_012001098v1       I 9745 C 0
s manLeu1.NW_012108508v1       260552 31 -    350446 acatggtgaaacc---------ccatctcta----ctaaaaata
i manLeu1.NW_012108508v1       I 11935 C 0
s otoGar3.GL873584             316686 44 +  11138919 acatgaaattactcacatttgaccatttctagtgcatgaaaatg
i otoGar3.GL873584             C 0 I 252
e canFam3.chrX                 367333 3062 + 123869142 I
e saiBol1.JH378345             204028  0 -    465904 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I

a score=24853.000000
s hg38.chrX_KI270880v1_alt     241865 16 +    284869 cagacaattagaagga
s panTro5.chrX                 426439 16 + 155549662 cagacaattagaagga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155770 16 -    177848 cagacaattagaagga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320512 15 +    417917 ca-acaattagctggg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56217 15 + 141252148 ca-aaaattagctggg
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    14223 15 +     34961 cc-aaaattagctggg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417780 15 +  25972781 cc-aaaattagctggg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288135 15 -   1025902 cc-aaaattagctggg
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       260583 15 -    350446 cc-aaaattagccggg
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e saiBol1.JH378345             204028  0 -    465904 I
e otoGar3.GL873584             316730 252 +  11138919 I
e chlSab2.chrUn_KE147541v1     218558 6130 -    811265 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I

a score=32922.000000
s hg38.chrX_KI270880v1_alt     241881 11 +    284869 tgtggtggctc
s panTro5.chrX                 426455 11 + 155549662 tgtggtggctc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155786 11 -    177848 tgtggtggctc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320527 11 +    417917 tgtggtggtgc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56232 11 + 141252148 tgtggcactgc
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    14238 11 +     34961 tgtggtggtgg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417795 11 +  25972781 tgtggtggtgg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288150 11 -   1025902 tgtggtggtgc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     224688 11 -    811265 tgtggtggtgc
i chlSab2.chrUn_KE147541v1     I 6130 C 0
s manLeu1.NW_012108508v1       260598 11 -    350446 tgtggtggtgc
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e saiBol1.JH378345             204028  0 -    465904 I
e otoGar3.GL873584             316730 252 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1   6498 8858 -     38397 I

a score=403094.000000
s hg38.chrX_KI270880v1_alt     241892 97 +    284869 gtgcctgtaatcccagctactctggaggctgaggcaggagagtcgcttgaacctggcagac-ggaggttgcagtgaggcgagatcacgccattgcggt
s panTro5.chrX                 426466 97 + 155549662 atgcctgtaatcccagctactctggaggctggggcaggagagtcgcttgaacctgggagac-ggaggttgcggtgaggcgagatcacgccattgcggt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155797 97 -    177848 atgcctgtaatcccagctactctggaggctggggcaggagagtcgcttgaacctgggagac-ggaggttgcggtgaggcgagatcacgccattgcggt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320538 97 +    417917 ctgcctgtaatcccagctactcaggaggctggagcaggagagtcacttgaacctgggagac-ggaggttgtggtgagccgagatcacgccattgcact
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56243 97 + 141252148 atgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccggtaggc-ggaggttgcagtgaggcgagatcgcgccactgcact
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  15356 98 -     38397 gtgcctgtcatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacaagaggtggtaatgaggtgagattgtgccgttgcact
i rheMac8.chrUn_NW_014831239v1 I 8858 C 0
s macFas5.chrUn_AQIA01076778    14249 98 +     34961 gtgcctgtcatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacaagaggtggtaatgaggtgagatcgtgccgttgcact
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417806 98 +  25972781 gtgcctgtcatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacaagaggtggtaatgaggtgagatcgtgccgttgcact
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288161 98 -   1025902 atgcctgtcatcccagctacttgggaggctgaggcaggggaatcgcttgaacccaggagacaagaggtggcagtgaggcgagatcgtgccgttgcact
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     224699 97 -    811265 gtacctgtcatcccagcgacttgggaggctgaggcaggagaatcgtttgaacccaggaggc-agaggtggcagtgaggcgagattgtgccgttgcact
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       260609 98 -    350446 gtgcctgtcatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacaagaggtggcagtgaggcgagatcgtgccgttgcact
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e saiBol1.JH378345             204028  0 -    465904 I
e otoGar3.GL873584             316730 252 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=175955.000000
s hg38.chrX_KI270880v1_alt     241989 49 +    284869 ccagcctgggcaacgagtacgaaactctgtctaa----aaaataaaaaaat-aa
s panTro5.chrX                 426563 49 + 155549662 ccagcctgggcaacgagtatgaaactctgtctaa----aaaataaaaaaat-ag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155894 40 -    177848 ccagcctgggcaacgagtacgaaactctgtctaa----aaaata----------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320635 50 +    417917 ccagcctgggcaacgagtacgaaactctgtctaa----aaaataaaaaaataaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56340 45 + 141252148 ccagcctgggtaacaagtataaaactctgtctaa----aaaataaaa-----aa
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  15454 47 -     38397 ccagcctgggcaacaggagtgaaactctgtctaa----aaaataaaata---aa
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    14347 47 +     34961 ccagcctgggcaacaagagtgaaactctgtctaa----aaaataaaata---aa
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417904 47 +  25972781 ccagcctgggcaacaagagtgaaactctgtctaa----aaaataaaata---aa
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288259 51 -   1025902 ccagcctgggcaacaagagtgaaactgcgtctaaaaataaaataaaata---aa
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     224796 51 -    811265 ccagcctgggcaacaagagtgaaactgcgtctaaaaataaaataaaata---aa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       260707 51 -    350446 ccagcctgggcaacaagagtgaaactgcgtctaaaaataaaataaaata---aa
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             266411 44 +    465904 ccggcctggccaacatggg-gaaatcccgtct------ctactaaaata---ca
i saiBol1.JH378345             I 2735 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e otoGar3.GL873584             316730 252 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=26415.000000
s hg38.chrX_KI270880v1_alt     242038 7 +    284869 aaaaaaG
s panTro5.chrX                 426612 7 + 155549662 aaaaaaG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155934 7 -    177848 aaaaaaG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320685 7 +    417917 aaaaaaG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56385 7 + 141252148 taaaaaG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  15501 7 -     38397 ataaaaG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    14394 7 +     34961 ataaaaG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417951 7 +  25972781 ataaaaG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288310 7 -   1025902 ataaaaG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     224847 7 -    811265 ataaaaG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       260758 7 -    350446 ataaaaG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             266455 4 +    465904 aaaa---
i saiBol1.JH378345             C 0 C 0
s otoGar3.GL873584             316982 7 +  11138919 AGAAAAC
i otoGar3.GL873584             I 252 C 0
e canFam3.chrX                 367333 3062 + 123869142 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=3333164.000000
s hg38.chrX_KI270880v1_alt     242045 637 +    284869 CAGACATCA-GC-AGGCCAGAACTAGAAGTCAGTCCT-GAAAGAGG-------------C-------------CCTCAGC--AAAAAA-------------------------------------------CATCAACTAGTAGCAGTAAGGGATAGGCAGAATCTATAAAACAGAA-TTTTATAAAGTAACTCACTGCACTCAGATAAAACGCGCTGTAACAAAAATGTCACTAATTTATATTAACTATGAATAACACCATTCTCCACGACTGAACAGCAGGTATTACAGAACGTTACAAAAATACGCTTAC-TTTCCATGAGTATGATATTGGATACTTCCAAAGTTTTGATGAATAGTGCTTGGGTGGAAAATCTGATTATTTGATAGACAATCACAATTAATCTCACATTTTCAGATGCAA----AAA-A-AAAAAAAGtgcttctaagctacggaaagtcttgctttcttaagtaattccagcttctctcctgaaatctttacacagttaattt-actc--agtctttggttaatagcctgtgctaagataaatttctgcGTAAATTCTGAATTTATGAGATCCCAAGTAATGAAGTTTTATTGAAGAGACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATGTTCCTAGTCCAATAGCCCTAACCTTGCAA-----AATTTATTTCCATCAAACG-AACAAAAGTcacac
s panTro5.chrX                 426619 635 + 155549662 CAGACATCA-GC-AGGCCAGAACTAGAAGTCAGTCCT-GAAAGGGG-------------C-------------CCTCAGC--AAAAAA-------------------------------------------CATCAACTAGTAGCAGTAAGGGATAGGCAGACTCTATAAAACAGAA-TTTTATAAAGTAACTCACTGCACTCAGATAAAATGCGCTGTAATAAAAATGTCACTAATTTATATTAACTATGAATAACACCATTCTCCACGACTGAACAGCAGGTATTACAGAACGTTACAAAAATACGCTTAC-TTTCCATGAGTATGATATTGGATACTTCCAAAGTTTTGATGAATAGTGCTTGGGTGGAAAATCTGATTATTTGATAGACAATCACAATTAATCTCACATTTTCAGATGCAA----AAA-a-aaaaaa--tgcttctaagctacagaaagtcttgctttcttaagtaattccaacttctctcctgaaatcttcacacagttaattt-actc--agtctttcgttaatagcccgtgctaagataaatttctgcgtaaattctgaatttatgagatcccaattaatgaagttttattgAAGAGACATCCCGTTCCTGATATAATTCTAATGTCATCATCATCAATTATGTTCCTAGTCCAATAGCCCTAACCTTGCAA-----AATTTATTTCCATCAAACG-AACAAAAGTcacac
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 155941 632 -    177848 CAGACATCA-GC-AGGCCAGAACCAGAAGTCAGTCCT-GAAAGGGG-------------C-------------CCTCAGC--AAAAAA-------------------------------------------CATCAACTAGTAGCAGTAAGGGATAGGCAGAATCTATAAAACAGAA-TTTTATAAAGTAACTCACTGCACTCAGATAAAATGCGCTGTAATAAAAATGTCACTAATTTATATTAACTATGAATAACACCATTCTCCACGACTGAACAGCAGGTATTACAGAACGTTACAAAAATACGCTTAC-TTTCCATGAGTATGATATTGGATACTTCCAAAGTTTTGATGAATAGTGCTTGGGTGGAAAATCTGATTATTTGATAGACAATCACAATTAATCTCACATTTTCAGatgcaa----aaa-a-aaa-----tgcttctaagctacagaaagtcttgctttcttaagtaattccaacttctctcctgaaatctttacacagttaattt-actc--agtctttggttaatagcccgtgctaagataaatttctgcgtaaattctgaatttatgagatcccaattaatgaagttttattgAAGAGACATCCTGTTCCTGATATAATTTTAATGTCATCATCATCAATTATGTTCCTAGTCCAATAGCCCTAACCTTGCAA-----AATTTATTTCCATCAAACG-AACAAAAGTcacac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       320692 634 +    417917 CAGACATCA-GC-AGGCCAGAACTAGAAGTCAGTCCT-GAAAGAGG-------------C-------------CCTCAGC--AAAAAA-------------------------------------------CCTCAACTAGTAGCAGTAAGGGATAGGCAGAATCTATAAAACAGAA-TTTTATAAAGTAACTCCCTGCACTCAGATAAAATGCGCTGTAATAAAAATGTCACTAATTTATATTAACTATGAATAACACCATTCTCCACGACTGAACAGCAGGTATTACAGAACGTTACAAAAATACGCTTAC-TTTCCATGAGTATGATATTGGATACTTCCAAAGTTTTGATGAATAGTGCTTGGGTGGAAAATCTGATTATTTGATAGACAATTACAATTAATCTCACATTTTCAGATGCAA----AAA-a-aaaaaa--tgcttctaagctacagaaagtcttgctttcttaagtaattccaacttctctcctgaaatctttacacagttaattt-actc--agtctttggttaatagcccatgctaagataaatttctgcgt-aattctgaatttatgagatcccaattaatgaagttttattgAAGAGACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAGTTATGTTCCCAGTCCAATAGCCCTAACGTTGCAA-----AATTTATTTCCATCAAACA-AACAAAAGTcacac
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  56392 634 + 141252148 CAGACCTCA-GC-AGGCCAGAACTAGAAGTCAGTCCT-GAAAGAGG-------------T-------------CGTCAGC--AAAAAG-------------------------------------------CATCAACTAGTAGCAGTAAGGGATAGGCAGAATCTATAAAACAGAA-TTTTATAAAGTAATTCACTGCACTCAGCTAAAATGCGGTGTAATAAAAATGTCACCAATTTATATTAACTATGAATAACACCAGTCTCCACAACTGTACAGCAGGCATTACAGAACGTTATAAAAATACACTTAC-TTTCCATGAGTATGATATTGGGTACCTCCGAAGTTTTGATGAATAGCAGTTGGGTGGGAAATCTGATTATTTGATAGACAATTACAATTAATCTCACATTTTCAGATGCAA----AAa-a-aaaaa---tgcttctaagctatggaaagtcttgctttcttaagtaattccaacttctctcctgaaatctttacatagttaattg-actc--cgtctttgcttaatagcccacgctaagataaatttctgcctaaattctgaatttatgagatcccaattaatgaagttttattgAAGAGACATCCCATTCCTGATATAATTTTAATGTCATCATCATCAATTGTGTTCCTAGTCCAACAGCCCTAACCTTGCAA-----AATGTATTTCCATCAAACA-AACAAAAGTcacac
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  15508 582 -     38397 CAGACATCA-GC-AAGATAGAACTAGAAGTCAGTCCT--AAAGAGG-------------C-------------CCTCAGCAAAAAAAA------------------------------------------CCATCAACTAGTAGCAGTCAGGGATTGGCAGAATCTATAAAACGGAA-TTTTAGAAAGTCATTTACTGCACTCAGCTAAAAGGCGCTCTAATAAAAA--TCACCAATTTATATTAACT------------------------------------ATTACAGAATGTTATAAAAATACACTCAC-TTTCCGTGAGTATGATATTGGAGACTTTCAAAGTTTTGATAAATACCGGTTGGGTGGAAAATCTGATTATTTGATAGACAATCCCAATTAAACTCACATTTTCAGATGAAA----AAA-A-AAA-----TGCGTCTAAGCTATGGAAAATCTTGCTCT---------------CTTCGCTCCTGAAATCTTTACACGGTTAATTT-ACTC--AGTCTTGGGTTAAGAGCCCACGCTAAGATAAATTTCTGCCTAAATTGTGAATTTATGAGATTCCCATTAATGAAGTTTTATTGAAGACACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCTTGCAA-----AATTTATTTCCATCAAACGAAACAAAAGTcacac
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    14401 582 +     34961 CAGACATCA-GC-AAGATAGAACTAGAAGTCAGTCCT--AAAGAGG-------------C-------------CCTCAGCAAAAAAAA------------------------------------------CCATCAACTAGTAGCAGTCAGGGATTGGCAGAATCTATAAAACGGAA-TTTTAGAAAGTCATTTACTGCACTCAGCTAAAAGGCGCTCTAATAAAAA--TCACCAATTTATATTAACT------------------------------------ATTACAGAATGTTATAAAAATACACTTAC-TTTCCGTGAGTATGATATTGGAGACTTTCAAAGTTTTGATAAATACCGGTTGGGTGGAAAATCTGATTATTTGATAGACAATCCCAATTAAACTCACATTTTCAGATGAAA----AAA-A-AAA-----TGCGTCTAAGCTATGGAAAATCTTGCTTT---------------CTTCGCTCCTGAAATCTTTACACGGTTAATTT-ACTC--AGTCTTGGGTTAAGAGCCCACGCTAAGATAAATTTCTGCCTAAATTGTGAATTTATGAGATTCCCATTAATGAAGTTTTATTGAAGACACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCTTGCAA-----AATTTATTTCCATCAAACGAAACAAAAGTcacac
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       417958 583 +  25972781 CAGACATCA-GC-AAGATGGAACTAGAAGTCAGTCCT--AAAGAGG-------------C-------------CCTCAGCAAAAAAAA-----------------------------------------CCCATCAACTAGTAGCAGTCAGGGATTGGCAGAATCTATAAAACGGAA-TTTTAGAAAGTCATTTACTGCACTCAGCTAAAAGGCGCTCTAATAAAAA--TCACCAATTTATATTAACT------------------------------------ATTACAGAATGTTATAAAAATACACTTAC-TTTCCGTGAGTATGATATTGGAGACTTTCAAAGTTTTGATAAATACCGGTTGGGTGGAAAATCTGATTATTTGATAGACAATCCCAATTAAACTCACATTTTCAGATGAAA----AAA-A-AAA-----TGCGTCTAAGCTATGGAAAATCTTGCTTT---------------CTTCGCTCCTGAAATCTTTACACGGTTAATTT-ACTC--AGTCTTGGGTTAAGAGCCCACGCTAAGATAAATTTCTGCCTAAATTGTGAATTTATGAGATTCCCATTAATGAAGTTTTATTGAAGACACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCTTGCAA-----AATTTATTTCCATCAAACGAAACAAAAGTcacac
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288317 563 -   1025902 CAGACA-----------------------TCAGTCCT-GAAAGAGG-------------C-------------CCTCAGCAAAAAAAA------------------------------------------CCATCGACTAGTAGCAGTAAGGGATTGGCAGAATCTATAAAACAGAA-TTTTAGAAAGTCATTTACTGCACTCAGCTAAAAGGCGCTCTAATAAAAA--TCACCAATTTATATTAACT------------------------------------ATGACAGAATGTTATAAAAATACACTTAC-TTTCCGTGAGTATGATATTGGAGACTTCCAAAGTTTTGATAAATACTGGTTGGGTGGAAAATCTGATTATTTGATAGACAATTTCAATTAAACTCACATTTTCAGATGAAA----AAA-ATAAA-----CGCGTCTAAGCTACGGAAAATCTTGCTTT---------------CTTTGCTCCTGAAATCTTTACACAATTAATTT-ACTC--AGTTTTGCGTTAAGAGCCCACGCTAAGATAAATTTGTGCCTAAATTGTGAATTTATGAGATCCCCATTAATGAAGTTTTATTGAAGAGACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCGTGCAA-----AATTTATTTCCATCAAATGAAACAAAAGTcacac
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     224854 561 -    811265 CAGACA-----------------------TCAGTCTT-GAAAGAGG-------------C-------------TCTCAGCAAAAAAAA-------------------------------------------CATCAACTAGTAGCAGTAAGGGATTGGCAGAATCTATAAAACAGAA-TTTTAGAAAGTCATTTACTGCACTCACCTAAAAGGCGCTATCATACAAA--TCACCAATTTATATTAACT------------------------------------ATTACAGAATGTTATAAAAATACACTTAC-TTTCCGTGAGTATGATATTGGATACTTCCAAAGTTTTGATAAATACTGGTTGAGTGGAAAATCTGATTATTTGATAGACAATCCCAATTAAACTCACAGTTTCAGATGAAA----AAA-A-AAA-----TGCGTCTAAGCTACGGAAAGTCTCGCTTT---------------CTTCGCTCCTGAAATCTTTACACGATTAATTT-ACTC--AGTCTTGGGTTAAGAGCACACGCTAAGATAAATTTCTGCCTAAATTGTGAATTTATGAGATCCCCATTAATGAAGTTTTATTGAAGAGACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCTTGCAA-----AATTTATTTCCATCAAACGAAACAAAAGTcacac
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       260765 560 -    350446 CACACA-----------------------TCAGTCCT-GAAAGAGG-------------C-------------CCTCAGC-AAAAAAA-------------------------------------------CATAAACTAGTAGCAGTAAGGGATTGGCAGAATCTATAAAACAGAA-TTTTAGAAAGTCATTTACTGCACTCAGCTAAAAGGCGCTATCATAAAAA--TCACCAATTTATATTAACT------------------------------------ATTACAGAATGTTATAAAAATACACTTAC-TTTCCGTGAGTATGATATTGGACACTTCCAAAGTTTTGATAAATACCGGTTGGGTGGAAAATCTGATTATTTGATAGACAATTTCAATTAAACTCACATTTTCAGATGAAA----AAA-A-AAA-----TGCGTCTAAGCTACGGAAAATCTTGCTTT---------------CTTCGCTCCTGAAATCTTTACACAGTTAATTT-ACTC--AGTCTTGGGTTAAGAGCACACGCTAAGATAAATTTCTGCCTAAATTGTGAATTTATGAGATCCCCATTAATGAAGTTTTATTGAAGAGACATCCCGTTCCTGATATAATTTTAATGTCATCATCATCAATTATCTTCCTAGTCTCATAGCCCAAACCTTGCAA-----AATTTATTTCCATCAAACGAAACAAAAGTCACAC
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             266459 666 +    465904 ----------------tcagAACTAAAACTCAGTCCTCAAAACAGA-------------C-------------TCTCAGCAAGAAAAAAAAAAAAAAACCCCATAAAACAAAGAAACGAACAAAAAAAACCCATATAGTTGTAGCAGTT-GAGACATGCCGAATCCATAAAACAGAATTTTTATGAAGTCATTTACTACGCGGAGCTCAAATGCGCGATAATAAAAATGTCACACATTTCCATTAACCGTGAATAACACCGGTCTCGATGATAAAACAGCAGGTATGACAGAATGCTGTAAAAACAGGCGTAT-TTTTCCTGAGTATGATATTAAAGACTTCCAAAGTGTGGATGAATCACGTTTTGGTGCAAAATCTGATGATCTGATAGACAATGACAATTAATCACACGTTTTCACACCCGA----AAATA-AGA-----CGATTCTCAGGTACGGAAAGTCTGACTTTCCTGAGTCATTCCAACTTCGCTCCCGAAATCTTTACAAGGTTAATTG-ACTC--AGTCTTTTGTTAATAGGCCACGCGAAGACAGATTTCTGCGTAAATTCTGAAGTGATGAGATCCCAATTAATGAGGTTTTATTGAACAGGCATCCGGTTCCTGATGTGATTTGAACGGCATCATCATCAATTATGTCGGTATTGTGATAGTCTAGACCTTGCAA-----GGTTTATTTCCATCAAACGAAACAAAGATCAGAC
i saiBol1.JH378345             C 0 I 1208
s otoGar3.GL873584             316989 644 +  11138919 CAGACACCAGGA-AAGCCAGGGCTAGAT-TCAAACCC-ACAGCAAGTTGTATACCAGATC-------------TCTCCACCAAAGCAG-----------------------------------------------AAATAGTTTCTGACAGGGATATGCAAGGTCTATGAAAGAGAA-ATCTATAAAGGAATTCACTGCACTTAGCTGAAATTCACCATAATAAAATTTTCACTAATTTATACAAAGTATGAATAACGCCAG-----------GTACAGCAGGTATTATAGAATATTATAAAGATGTCCTTAAGTTTCCATGCATATGAAATGAAACACTTGCAAAGTTGTGATGAATAGTGTTTGGGTAGGTAATCTGATCGTTTGATAGACAATTACAATTAATCTCACATTTTCAGGTGTAAGGAGaaa-g-aaa-----tgcttctcaactactggaagtctcgctttcttaaataattccaacttctcccttgacaccattaggtggttaatttaactcagagtcttttctttactcccagcactaagataaatttcagcctaaattctgaatttatgagatcccaattaatgaggctttattgAAGAGACAT-CAGTCCCTGATATAATTTTAATGTCACCGTCATCAATTATCTTGGTCGTCCAATAGTCCAAATGTAGCAAGGTTTAATTTAGCTCTACCaaaaaaaaaaaaaaaaaaa-
i otoGar3.GL873584             C 0 I 26
s canFam3.chrX                 370395 626 + 123869142 CAGCTATCA-GCTCAGCTGGATCTAGAATCCAGACCC-ACGGTTGG-------------CTTTGCACCGTACACCTCGGC-AAAAACG-------------------------------------------CACAACACGGTATCAGATAAAGCGATGCATGATCTATAAAATAGAA-CTTTACAAAGGAATCCACCGCACTCTGCTAAGATTCACTATAATAaaaatttcactgattt-tgttgagtaggaataatgccagtcttaaggacaggacagcaggtatcacagaatattgtaaaaa---acagac-tttcaacgcatataatattaaatgcttgcaaagttttgatgaatgacgctccggtgggtaatccgatcatttgataggcaattataatcgatcccacatttttaggtgtaa----aat-a-aa------tgcttccagactactgaaagtgtcac------------------caactcccctgaaatctttacgctattaattt-actcggaggcttttcttcatagccaacactaagataaatttcagcccaaattctgaatttatgagatcctaattaacgaggttttattgAAGAGACGTCTTGTTCCTGATGTGATTTTAATGTCATCGTTATCAATTATCTTGGTAGTTCAATAGCCCAAACACAGCAAAGTTTAATTCATTTCTATCAAACGAAACAAAAG------
i canFam3.chrX                 I 3062 C 0
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=472317.000000
s hg38.chrX_KI270880v1_alt     242682 113 +    284869 acacacaaacacacacacacacaca----------GAGGATTCATTAAGAGCGGCAAAGATAAAATCATT--ACCACATCCATCTTGAGAAGTTGAGCTGATG-TGTGTATTCTT--------CAAGGATCACA
s panTro5.chrX                 427254 115 + 155549662 acacacaaacacacacacacacacaca--------GAGGATTCATTAAGAGCGGCAAAGATAAAATCATT--ATCACATCCATCTTGAGAAGTTGAGCCGATG-TGTGTATTCTT--------AAAGGATCACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 156573 123 -    177848 acacacaaacacacacacacacacacacacacacGGAGGATTCATTAAGAGCGGCAAAGATAAAATCAGT--ACCACATCCATCTTGAGAAGTTGAGCCGATG-TGTGTATTCTT--------CAAGGATCACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       321326 114 +    417917 acacacaaacacacacacacacacaca--------GAGGATTCATTAAGAACGTCAAAGAT-AAATCATT--ACCACATCCATCTTGAGAAGTTGAGCCGATG-TGTGTATTCTT--------CAAGGATCACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57026 113 + 141252148 acacacacacacacacacacacaca----------GGGGATTCATTAAGAGCGGCAAAGATAAAATCATT--ACATCATCCATCTTCAGAAGTTGAGCCGATG-TGTGTATTCTT--------CAAGGATCACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16090 103 -     38397 at--------acacacacacacacG--------------ATTCATTAAGAGGGGCAGAGATAAAATCATTACACACCATCCATCTTGAGAAGTTGAGCCAATG-TGTGTATTCTT--------CAAGGATCACA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    14983 103 +     34961 at--------acacacacacacacG--------------ATTCATTAAGAGGGGCAGAGATAAAATCATTACACACCATCCATCTTGAGAAGTTGAGCCAATG-TGTGTATTCTT--------CAAGGATCACA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       418541 109 +  25972781 at--acacacacacacacacacacG--------------ATTCATTAAGAGGGGCAGAGATAAAATCATTACACACCATCCATCTTGAGAAGTTGAGCCAATG-TGTGTATTCTT--------CAAGGATCACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288880 111 -   1025902 acacacacacacacacacacacacG--------------ATTCATTAAGAGGGGCAGAGATAAAATCATTACACACCATCCATCTGGAGAAGTTGAGCCAACG-TGTGTATTCTT--------CAAGGATCACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225415 109 -    811265 acacacacacacacacacatacacG--------------ATTCATTAAGAGGGGTAGAGATAAAATCATT--ACACCATCCATCTTGAGAAGTTGAGCCAATG-TGTGTATTCTT--------CAAGGATCACT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       261325  91 -    350446 --------------------ACACG--------------ATTCATTAAGAGGGGCAGAGATAAAATCATTACACACCATCCATCTGGAGAAGTTGAGCCAATG-TGTGTATTCTT--------CAAGGATCACA
i manLeu1.NW_012108508v1       C 0 I 4952
s otoGar3.GL873584             317659 105 +  11138919 GTGCTCACACACACACGCATGCATG----------GAA-ATTTCACAAAAGGTGCAAATATACAATCATT------------------GAAGTTGAGTGGATACCATACATTCCCCCTGGTGGCATGGACCACA
i otoGar3.GL873584             I 26 C 0
s canFam3.chrX                 371021 100 + 123869142 ------GGAAACACATACGTACCCA----------GAAGATGCATTAAG-GGGGCAGAAATAAAATCATT--CTAACATCCATCTTGAGGCGTTGAGCCAATG-TGT------CT--------CGAGGACCACA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=36972.000000
s hg38.chrX_KI270880v1_alt     242795 8 +    284869 TCTATTtt
s panTro5.chrX                 427369 8 + 155549662 TCTATTtt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 156696 8 -    177848 TCTATTtt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       321440 8 +    417917 TCTATTtt
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57139 8 + 141252148 TCTAtttt
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16193 8 -     38397 CCTAtatt
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15086 8 +     34961 CCTAtatt
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       418650 8 +  25972781 CCTAtatt
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288991 8 -   1025902 CCTAtatt
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225524 8 -    811265 CCTAtatt
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584             317764 8 +  11138919 TCTATTTT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 371121 8 + 123869142 TCTATTTT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=5005.000000
s hg38.chrX_KI270880v1_alt     242803 1 +    284869 t
s panTro5.chrX                 427377 1 + 155549662 t
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 156704 1 -    177848 t
i panPan2.chrUn_NW_014024190v1 C 0 I 71
s gorGor5.CYUI01015925v1       321448 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 I 24
s nomLeu3.chrX                  57147 1 + 141252148 t
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16201 1 -     38397 t
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15094 1 +     34961 t
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       418658 1 +  25972781 t
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       288999 1 -   1025902 t
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225532 1 -    811265 t
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584             317772 1 +  11138919 T
i otoGar3.GL873584             C 0 I 8295
e canFam3.chrX                 371129 0 + 123869142 C
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I

a score=33662.000000
s hg38.chrX_KI270880v1_alt     242804 22 +    284869 tattttattttatt----ttatttta
s panTro5.chrX                 427378 14 + 155549662 tattttattttatt------------
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       321473 26 +    417917 tattttattttatttattttatttta
i gorGor5.CYUI01015925v1       I 24 C 0
s nomLeu3.chrX                  57148 14 + 141252148 tattttattttatt------------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16202 22 -     38397 tattttaatttatt----ttatttta
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15095 14 +     34961 tattttaatttatt------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       418659 22 +  25972781 tattttattttatt----ttatttta
i macNem1.NW_012017243v1       C 0 I 4824
s cerAty1.NW_012001098v1       289000 22 -   1025902 tattttatcttatt----tcatttta
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225533 18 -    811265 tattttattttatt----ttat----
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 371129  0 + 123869142 C
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e panPan2.chrUn_NW_014024190v1 156705 71 -    177848 I

a score=-325.000000
s hg38.chrX_KI270880v1_alt     242826 70 +    284869 ttttattttattttattttattttatt--attttattttattttattttatttcactttattttat----ttttat
s panTro5.chrX                 427392 53 + 155549662 --------------attttattttatt-----ttattttattttattttatttcactttattttat----ttttat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       321499 76 +    417917 tttcattttatttcattttactttattttattttattttatttcattttatttcactttactttattttattttat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57162  5 + 141252148 ---------------------tttat--------------------------------------------------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16224 16 -     38397 --------------------------------------------------ttttattttattttat----------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15109 24 +     34961 ------------------------------------------ttattttattttattttattttat----------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       289022 56 -   1025902 ----------ttttattttattttattttattttattttattttattttattttattttattttat----------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225551 11 -    811265 -------------------------------------------------------ttttattttat----------
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 371129  0 + 123869142 C
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e panPan2.chrUn_NW_014024190v1 156705 71 -    177848 I

a score=936599.000000
s hg38.chrX_KI270880v1_alt     242896 301 +    284869 tttttgagacggag-ttcgctcttattacccaggctggagtgcagtggcatcatctcggctcagtgcaacctccgcctcccgggttcaagcgactctcctgcctcagcctctcgagtagctgggattacaggcacccgccaccacacccagctaa-ttttatatttttagtagagatggggtttcaccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggactcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCATATGTATTTT
s panTro5.chrX                 427445 301 + 155549662 tttttgagacggag-ttcgctcttattacccaggctggagtgcagtggcatcatctcggctcactgcaacctccgcctcccgggttcaagcgactctcctgcctcagcctctcgagtagctgggattacaggcacccgccaccacacccagctaa-ttttatatttttagtagagatggggtttcaccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggactcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCACATGTATTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 156776 301 -    177848 tttttgagacggag-ttcgctcttattacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcaagcgactctcctgcctcagcctctcgagtagctgggattacaggtgcccgccaccacacccaactaa-ttttatatttttagtagagatggggtttcaccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggactcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCATATGTATTTT
i panPan2.chrUn_NW_014024190v1 I 71 C 0
s gorGor5.CYUI01015925v1       321575 303 +    417917 tttttgagacggagtttcgctcttattacccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctccagggttcaagcgactctcctgcctcagcctctcgagtagctgggattacaggcacccgccaccacacccagctaatttttgtgttattagtagagatggggtttcaccatgttggccaggctggtctccaacctctgacctcaggtgatccgcccgcctcggactcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCACGTGTATTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57167 302 + 141252148 tttttgagacacagtttcgctcttattacccacgctggagtgcaatggcgccagctcggctcactgcaacctccgcctcccgggttcaagcgaatctcctgcctcagcctctcgagtagcttggattacaggcacctgccaccacacccagctaa-ttttgtatttttagcagagacagggtttcaccatgttggccaggctggtctctaacctctgacctcaggtgatccacctgcctcagattcccaaagtgctgggattgcaggcgtgagccactgtgcctggcGGATCACATGTATTTT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16240 302 -     38397 tttttgagatggagtttcgctcttattacccaggctggagtgcagtggcaccatctcggctcaccgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgcccggctaa-ttttgtatttttagtagagacagggtttcgccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCACATGTATTTT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15133 302 +     34961 tttttgagatggagtttcgctcttattacccaggctggagtgcagtggcaccatctcggctcaccgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggatgacaggcacctgccaccacgcccggctaa-ttttgtatttttagtagagacagggtttcgccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCACATGTATTTT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       289078 301 -   1025902 tttttgagatggagttttgttcttattacccaggctggagtgcagtggcaccatctcggctcacggcaacctccgcct-ctgggttcaagcgattctcctgcctcagcctcccaagtagctgggatgacaggcgcccgccaccacgcctggctaa-ttttgtatttttagtagagacagggtttcgccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccactgtgcctggcTGATCACATGCATTTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225562 302 -    811265 tttttgagttggagtttcgctcttattacccaggctggagtgcagtggcaccatctcagctcactacaacctccgcctcctgggttcaagcgattctcctgcctcagcctctcgagtagctgggatgacaggcacctgccaccacacctggctaa-ttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctccaacctctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccactgcgcctggcTGATCACATGTATTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 371129   0 + 123869142 C
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=368549.000000
s hg38.chrX_KI270880v1_alt     243197 121 +    284869 TAAAGACGGGGAAATAAAGCCAGCATTGCTCCTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCCAGAAGATAAGAAGACACTTTAA-----ATCCTCTCAGCCTTCCT----------TGTCTACTACAGACTTGCT
s panTro5.chrX                 427746 121 + 155549662 TAAAGACGGGGAAATAAAGCCAGCATTGCTCCTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCCAGAAGATAAGAAGATGCTTTAA-----ATCCTCTCAGCCTTCCT----------TGTCTACTACAGACTTGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 157077 121 -    177848 TAAAGACGGGTAAATAAAGCCAGCATTGCTCCTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCCAGAAGATAAGAAGACGCTTTAA-----ATCCTCTCAGCCTCCCT----------TGTCTACTACAGACGTGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       321878 121 +    417917 TAAAGACAGGGAAATAAAGCCAGCATTGCTCCTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCCAGAAGATAAGAAGATGCTTTAA-----ATCCTCTCAGCCTTCCT----------TGTCTACTACAGACTTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57469 122 + 141252148 TAAAGCCAGGGAAATGAAGCCAGCCTTGTTCCTGATTTCCT--------------------------TCCCTGGGTCTTTGTCCCCTCCCAAAAGATAAGAAGACGCTTTAA-----ATCCTCTCAACCTTCCT----------TCTCTGCTACAGGCTTGCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16542 121 -     38397 TAAAGAGAGGGAAATAAAACCAACATTGTTCCCGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCCGGAAGATAAGAAAACGCTTTAC-----ATCCTCTCAGCCTTCAT----------TGTCTACTGTAGACTTGCT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    15435 121 +     34961 TAAAGAGAGGGAAATAAAACCAACATTGTTCCCGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCTGGAAGATAAGAAAACGCTTTAC-----ATCCTCTCAGCCTTCAT----------TGTCTACTGTAGACTTGCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       289379 120 -   1025902 TAAAGAGAGGGAAATAAAACCAGTATTGTT-CTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCTGGAAGATAAGAAAACGCTTTAC-----ATCCTCTCAGCCTTCAT----------TGTCTACTGTAGACTTGCT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     225864 120 -    811265 TAAAGAGAGGGAAATAAAACCAGTATTGTT-CTGATTTCCT--------------------------TCCCT-GGTCTTTGTCCCCTCCTGGAAGATAAGAAAACGCTTTAC-----ATCCTCTCGGTCTGCAT----------TGTCTACTGTAGACTTGCT
i chlSab2.chrUn_KE147541v1     C 0 I 2870
s canFam3.chrX                 371129 162 + 123869142 TAAAGAGAATAAGATAAGGTTGCTGTTGCTCCTGACTCCCTCTCCTGGGACGGAACCACAGGAGGCCTCCCT-GGGCTGTGTCCCCTCCCAGGGGACAAGATAGAGCTTTCAGGATGATGACCTCAGGCTCTCTCTCAACCAGCCACTCTCTGTAGACTTGCT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=46462.000000
s hg38.chrX_KI270880v1_alt     243318 29 +    284869 AACGCACAGAGAAGACAGC-CCTGCATCTT-
s panTro5.chrX                 427867 10 + 155549662 AACGCACAGA---------------------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 157198 29 -    177848 AACGCACAGAGAAGACAGC-CCTGCATCTT-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       321999 29 +    417917 AACGCACAGAGAAGACAGC-CCTGCATCTT-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57591 29 + 141252148 AACACACAGAGAAGACAGC-CCTGTATCTT-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  16663 29 -     38397 AACGCACAGACAAGACGGC-CCTGCATCTT-
i rheMac8.chrUn_NW_014831239v1 C 0 I 3577
s macFas5.chrUn_AQIA01076778    15556 29 +     34961 AACGCACAGACAAGACGGC-CCTGCATCTT-
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       289499 29 -   1025902 AACGTACAGACAAGACGGC-CCTGCATCTT-
i cerAty1.NW_012001098v1       C 0 I 2474
s canFam3.chrX                 371291 31 + 123869142 AATGGAAGAAGAAGACCACACTTACCCCGTT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=4916.000000
s hg38.chrX_KI270880v1_alt     243347 5 +    284869 AATGG
s panPan2.chrUn_NW_014024190v1 157227 5 -    177848 AATGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       322028 5 +    417917 AATGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57620 5 + 141252148 GATGG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    15585 5 +     34961 CATAG
i macFas5.chrUn_AQIA01076778   C 0 I 80
s canFam3.chrX                 371322 5 + 123869142 AATGG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e panTro5.chrX                 427877 0 + 155549662 C
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=22077.000000
s hg38.chrX_KI270880v1_alt     243352 29 +    284869 -TTGTCATCCT--CTTTCATCCAGCTCCTGGC
s panTro5.chrX                 427877 27 + 155549662 --TG-CATCCT--CTTTCATCCAGCTCCTGGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 157232 29 -    177848 -CTGTCACCCT--CTTTCATCCAGCTCCTGGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       322033 29 +    417917 -CTGTCATCCT--CTTTCATCCAGCTCCTGGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57625 29 + 141252148 -CTGTCATCCT--CTTTCATCCACCTCCTGCC
i nomLeu3.chrX                 C 0 C 0
s canFam3.chrX                 371327 31 + 123869142 CTTGGC-TCCTGGCTTTCTTTGGGCTTTTGAC
i canFam3.chrX                 C 0 I 2047
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    15590 80 +     34961 I

a score=52526.000000
s hg38.chrX_KI270880v1_alt     243381 61 +    284869 CAGTCCTTGGAAACGCCTGCCGGCCACACTACAGTCTTGCCATATTGCCCCCAAATGAGCT
s panTro5.chrX                 427904 61 + 155549662 CAGTCCTTGGAAACGCCTGCCGGCCACACTACAGTCTTGCCATATTGCCCCCAAATGAGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 157261 61 -    177848 CAGTCCTTGGAAACGCCTGCTGGCCACACTACAGTCTTGCCATATTGCCCCCAAATGAGCT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       322062 61 +    417917 CAGTCCTTGGAAACGCCTGCCGGCCACACTACAGTCTTGCCATATTGTCCCCAAATGAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57654 59 + 141252148 CAGTCCTTGGAAACACCTGCCAGCCACACTACAGTCTTGCC--ATTGCCTACAAATGAGCT
i nomLeu3.chrX                 C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    15590 80 +     34961 I

a score=511883.000000
s hg38.chrX_KI270880v1_alt     243442 498 +    284869 TAtttttacttatttatttatttattt----ttgagacagacttctcactctgtcg-ccaggctggagtgcagtggcatgatgtcagctcactgcaacctccgcctcccgggttcaagcgactctccttgcctcagcctcctgagtagctgggattacaggcgccagccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttgattaggctggtctcaaactcctgacatcaggtggtccacctgcctcggtctcccaaagtgctgggattatacgcgtgagccactgtgcacggccAATCTGTGTAATCTATC----ATCTCTCTCTCTCTCTTAtttatttatttagagacagagtttt-gctcttgttacccaggctggagtgcagtggcatgatgtcaactcactgcaacctccgcctcc-gggttcaagccattctcctgcttcagcctcctgagtagctgggattacaggcaccagcaaccaa
s panTro5.chrX                 427965 501 + 155549662 TATTTTCACTTAtttatttatttatttatttttgagacagacttctcactctgtcg-ccaggctggagtgcagtggcgtgatgtcagcttactgcaagctccgcctcctgggttcaagccattctcct-gcctcagcctcctgagtagctgggattacaggtgccagcaaccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttgattaggctggtctcaaactcctgacttcaggtggtccacccgcctcggtctcccaaagtgctgggattatatgcgtgagccactgtgcacggccAATCTGTGTAATCTATC----ATCTCTCTCTCTCTCTTAtttatttatttagagacagagtttt-gttcttgttacccaggctggagtgcagtggcatgatgtcaactcactgcaacctccgcctgc-gggttcaagccattctcctgcttcagcctcccgagtagctgggattacaggcaccagcaaccaa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 157322 497 -    177848 TATTTTCACTTAtttatttatttattt----ttgagacagacttctcactctgtcg-ccaggctggagggcagtggcgtgatgtcagcttactgcaagctccgcctcctgggttcaagccattctcct-gcctcagcctcctgagtagctgggattacaggtgccagcaaccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttgattaggctggtctcaaactcctgacctcaggtggtccacccgcctcggtctcccaaagtgctgggattatacgcgtgagccactgtgcacggccAATCTGTGTAATCTATC----ATCTCTCTCTCTCTCTTAtttatttatttagagacagagttttggttcttgttacccaggctggagtgcagtggcatgatgtcaactcactgcaacctccgcctgc-gggttcaagccattctcctgcttcagcctgctgagtagctgggattacaggca-cagcaaccaA
i panPan2.chrUn_NW_014024190v1 C 0 M 223
s gorGor5.CYUI01015925v1       322123 497 +    417917 TAtttttacttatttatttatttattt----ttgagacagacttgtcactctgtcg-ccaggctggagtgcagtggcgtgatgtcagctcactgcaacctccgcctcccgggttcaagccattctcct-gcctcagcctcctgagtagctgggattataggcgccagccaccacgcccggcaaatttttgtatttttagtagagacagggtttcaccgtgttgattaggctggtctgaaactcctgacctcaggtggtccacc-gccctggtctcccaaattgctgggattatacgcgtgagccactgtgcacggccAATCTGTGTAATCTATC----ATCTCTCTCTCTCTCTTAtttatttatttagagacagagtttt-gctcttgttacccaggctggagtgcagtggcgtgatgtcagctcactgcaacttctgcctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggattacaggcaccagcaaccac
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  57713 500 + 141252148 TAtttttatttatttatt--ttttttt----ttgagacagaattctcgcgccgtctcccaggctggagtgcagtggcgcaatgtcagctcactgcaacctccgcctcctgggttcaagccattctcct-gcttcagcctcctgagtagctgggactacaggtgccagcaaccacgcccagctaattttcgtatttttagtagagatggagtttcaccgtgttgattaggctggtctcaaactcctgacctcaggtggtccacccgcctcggtctcccaaagtgctgggattatacgcataaaccactgtgcatggccAATCTGT-TAAtctatcctctctctctctctctctctTACTTAtttatttagagacggagtttt-gctcttgttacccaggctggagtgcagtggcgcaatgtcagctcactgcaacctccgcctcctgggttcaagccattctcccgcttcagcctcctgagtagctgggattacaggcaccagcaaccac
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    15670 420 +     34961 ----TAAAtttatttatt-------------ctgagacacag-tctcgctctgtcacccaggctggagtgcagtggtgcaatgtcagctcactgcaagctctgcctcctgggttcaagccattctcct-gcctcagcctcccaagtagctgggactacaggtgcccaccaccacgcccggcttgtttttctagttttagtagagacggggtttcaccgtgttaaccaggatggtctcgatctcctgacctc--gtgatccgcccacctcggcctcccaaagagctgggattacaggcctgagccactgcgcccagcc--------TAAttttgt----at--------------------ttttagtagagatggggtttc-gc-catgttgtccaggctgg-------------------------------tctcgaactcctgacctcagttgatcagccaacctcagcctcttgaag---tgagattacaggcgttagccaccgc
i macFas5.chrUn_AQIA01076778   I 80 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=27794.000000
s hg38.chrX_KI270880v1_alt     243940 51 +    284869 gcccg------gctaatttttc-----tagttttagtagagatggggtttcaccatgctggc-
s panTro5.chrX                 428466 51 + 155549662 gcctg------gctaacttttc-----tagttttagtagagatggggtttcaccatgctggc-
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       322620 51 +    417917 gcccg------gctaatttttc-----tagttttagtagagatggggtttcaccatgctggc-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  58213 51 + 141252148 gcctg------gataatttttc-----tagttttagtagagacgggctttcaccatgctggc-
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    16090 63 +     34961 gcctgaccTGTGCTGTCTTTCCATTTGCAtttttttttgagatggagtttccctctagtcgcc
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e panPan2.chrUn_NW_014024190v1 157819 223 -    177848 M

a score=11075.000000
s hg38.chrX_KI270880v1_alt     243991 8 +    284869 caggctgg
s panTro5.chrX                 428517 8 + 155549662 cagactgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 158045 8 -    177848 CAGGCTGG
i panPan2.chrUn_NW_014024190v1 M 223 C 0
s gorGor5.CYUI01015925v1       322671 8 +    417917 caggctgg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  58264 8 + 141252148 caggctgg
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    16153 8 +     34961 caggctgg
i macFas5.chrUn_AQIA01076778   C 0 I 2172
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=372089.000000
s hg38.chrX_KI270880v1_alt     243999 444 +    284869 tcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattataggcgtgagccaacgcacccggccTGAttttgtatttttagtagagatggggtttcaccacgctggccaggctggtcttgaactcctgacctcagttgatccacccacctcagcctcccaaagtgagattccaggcgtgagccaccgtgcctgaccTATGCTGTCTTTTCATTTGCAtttttttttttt------gagatggaatttcgctcttgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaacctccgcctcccgggttcaagcggttctcctgcctcagcctcccaactagctgggatgacaggcatgcaccaccatgcccggctaattttgtatttttagtagacacagggtttcaacatgttgacctggc
s panTro5.chrX                 428525 450 + 155549662 tcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaatgcacccggccTGAttttgtatttttagtagagatggggttttaccatgctggccaggctggtcttgaactcctgacctcagttgatccacccacctcagcctcccaaagtgagattccaggcgtgagccaccgcgcctgaccTATGCTGTCTTTTCATTTGCAttttttttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaacctccgcctcccgggttcaagcggttctgctgcctcagcctcccaactagctgggatgacaggcatgcaccaccatgccccgctaattttgtatttttagtagacacagggttgcaacatgttgacctggc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 158053 437 -    177848 TCTTGAActcctgacctcaggtgatccacccgcctccgcctcccaaagtgctgggattacaggcgtgagccaacgcacccggcctga-tttgta-ttttagtagagatggcgttc--acacgctggccaggctggtcttgaactcctgacctcagtttatccacccacctcagcctcccaaagtgagattccaggcgtgagccaccgctcctgaccTATGCTGTCttttcattttcattttttttt---------aagatggaatttcgctcttgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcccgggttcaagcggttctgctgcctcagcctcccaactagctgggatgacaggcatgcaccaccatgcccggctaattttgtatttttagtagacacagggttgcaacatgttgacctggc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       322679 446 +    417917 tcttgaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaacgcacccggccTGAttttgtattttcagtagagatggggtttcaccacgctggccaggctggtcttgaactcctgacctcagttgatccgcccacctcagcctcccaaagtgagattccaggcgtgagccaccgtgcctgaccTATGCTGCCTTTTCATTTGCAttttttttttttttt---gagatggagtttcgctcttgttgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcc-cctgggttcaagcggttctcttgcgtcagcctcccaactagctgggatgacaggcatgcaccaccatgcccggctaattttgtatttttagtagacacagggtttcaacatgttgacctggc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  58272 439 + 141252148 tcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattgcaggcatgagccactgcaccaggccTGAttttgtatttttagtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcagttgatctgctcacctcagcctcccaaagtgagattacaggcacctgccaccacgcctgaccTATGCTGTCtttttattttcatttttttt----------gagatggagttttgctcttgttgcccaggctggagcgcaatggcgcaatctcagctcactgcaacctctgcc-cctgggttcaagcgattctcctgcctcagcctcccaactagctgggatgacaggcatgcaccaccacgcctggctaattttgtatttttagtagacacagggtttcaccatgttgaccaggc
i nomLeu3.chrX                 C 0 I 1511
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    16161 2172 +     34961 I

a score=33107.000000
s hg38.chrX_KI270880v1_alt     244443 67 +    284869 Ctggataccacttttaattttaccttgctctgaatagtttcgtattcctctgactatgtggaagctt
s panTro5.chrX                 428975 67 + 155549662 Ctggataccacttttaattttaccttgttctgaatagtttcgtattcctctaactatgtggaagctt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 158490 67 -    177848 Ctggataccacttttaattttaccttgttctgaatagtttcgtattcctctaactatgtggaagctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       323125 63 +    417917 Ctggataccacttttaattttactttgttctgaatagttttgtattcct----ctatttggaagctt
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  58711 1511 + 141252148 I
e otoGar3.GL873584             317773 8295 +  11138919 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    16161 2172 +     34961 I

a score=461808.000000
s hg38.chrX_KI270880v1_alt     244510 686 +    284869 tgttctgggattctgtgaagtca-cttggaggtagtttgaacccttcaggt--cttggtttcattctgttggaatgaagagtaatgtttaattcgggat--------taatttgtccaagctactgaggaaaggtcctcctcactatcctacctaacgccccatgaactatggaagttttccaatctagaaggtcagaacaggcaccttttgaacattgtgtgaacgctggtcactattccctgtttccatgtgtcatttctgttggttctttccctcaccttgaataatttcctcatagacacatgtcaatcagttctcagcccaacgctctctaggtggaccttctgcagaaggtctctatgcttctttctccacgtggatctctcatatctgctactctgtcctgtgaactcttcctgccttggtctccccagactctcagctccaccttctcaacacaagaggccttccagtttccatctgtgttgtgcctccttgtactgccgcctataaaatctctcaggcagtaagccgggagatcatagggctcactgcatt--acttttccatctct----cagagatcattgtctttcattgcttcatgtccagggtcttgaacgccatcatttcatgtattatgcccagtggaagataattctgatctctgttacttcatgttggtcaaaaccagaagcctG
s panTro5.chrX                 429042 686 + 155549662 tgttctcggattctgtgaagtca-cttggaggtagtttgaacccttcagga--cttggtttcgttctgttggaatgaagagtaacgtttaattcgggat--------taatttgtccaagctactgaggaaaggtcctcttcactatcctacctaacgccccatgaactatggaagttttccaatctagaaggtcagaacaggcaccttttgagcattgtgtgaacgctggtcactattccctgttcccgtgggtcctttctgttggttctttccctcaccttgaataatttcctcatagacacatgtcaatcagttctcagcccaacgctctctaggtggaccttctgcagaaggtctctatgcttctttctccacgtggttctctcatatctgctactctgtcctgtgaactcttcctgccttggtctccccagactctcagctccaccttctcaacacaagaggccttccagtttccatctgtgttgtgcctccttgtactgccgcctataaagtctctcaggcagtaagccgggagatcacagggctcactgcatt--acttttccatctct----caaagatcattgtttttcattgcttcatgtccagggtcttgaacgccatcatttcatgtattatgcccagtggaagataattctgatctctgttacttcatgttggtcaaaagcagaagcctG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 158557 686 -    177848 tgttctcggattctgtgaagtca-cttggaggtagtttgaacccttcagga--cttggtttcattctgttggaatgaagagtaacgtttaattcgggat--------taatttgtcgaagctactgaggaaaggtcctgttcactatcctacctaacgccccatgaactatggaagttttccaatctagaaggtcagaacaggcaccgtttgagcattgtgtgaatgctggtcactattccctgttcctgtgggtcctttctgttggttctttccctcaccttgaataatttcctcatagacacatgtcaatcagttctcagcccaacgctctctaggtggaccttctgcagaaggtctctatgcttctttctccacgtggttctctcatatctgctactctgtcctgtgaactcttcctgccttggtctccccagactctcagctccaccttctcaacacaagaggccttccagtttccatctgtgttgtgcctccttgtactgccgcctataaagtctctcaggcagtaagccgggagatcacagggctcactgcatt--acttttccatctct----cagagatcattgtctttcattgcttcatgtccagggtcttgaacgccatcatttcatgtattatgcccagtggaagataattctgatctctgttacttcatgttggtcaaaagcagaagcctG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       323188 686 +    417917 tgttctgggattctgtgaagtca-cttggaggtagtttgaacccttcaggt--cttggtttcattctgttggaatgaagagtaatgtttagttcgggat--------taatttgtccaagctactgaggaaaggtcctcctcactatcctacctaacgccccatgaactatggaagttttccaatctggaaggtgagaacaggcaccttttgagcattgtgtgaacgctggtcactattccctgttcccatggatcctttctgttggttctttccctcaccttgaataatttcctcatacacacatgtcaatcagttctcagcccaatgctctctaggtggaccttctgcagaaggtctctatgcttctttctccacgcagctctctcatatctgctactgtgtcctgtgaactcttcctgccttggtctccccagactctcagctccaccttctcaacacaagaggccttccagtttccatctgtgttgtgcctccttgtactgccgcctacaacatctctcaggcagtaagccgggagatcatagggctcactgcatt--acttttccatctct----cagagatcattgtctttcattgcttcatgtccagggtcttgaacgccatcatttcatgtattatgcccagtggaagataattctgatctctgttacttcatgttggtcaaaagcagaagcctg
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             326068 659 +  11138919 tgccctgtttctctgtgcagacagcttgctggtg--ttggcctccccaggtccctcagttcagtgcaaatggactgagcgg--gtgttt-gtatggagtcgcacccacaATTTGTCTAACTtactgaggcaaagcctttctcatcaccctacctaaggcttggtgagctatggaggtttcctaac----gaggtcaggagaggtaacttttgagctctgtgcaaacatgggtcactagttgctgtccc---------ttcccggtggttctttccctgacctgggttagtttctctgtggtcttgtgtccggcagctgtctgct--gtgtcctgcaggggaaccttctgcagg----ccttggggctccctgtctgcgtggctctcctgcctccgctaatctgtcctgtggactc-tcctgtcttggtctcctcagactctcagcctcatctcctcaagtcaaggaatcttgaagggttccctagtattgt-------------------tggaaaatgtctcaagcaacgagcttggcaatcatggggctcaccccattagagctttctctctcttttgctgagatcactgtctttcttggccttatgtccagcaccttgaaaactattgcttcatgtattttgtgcagtggaagatgcatctagtccctgttattatatcttggtcagaagtagaaacctg
i otoGar3.GL873584             I 8295 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  58711 1511 + 141252148 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    16161 2172 +     34961 I

a score=1500.000000
s hg38.chrX_KI270880v1_alt     245196 1 +    284869 C
s panTro5.chrX                 429728 1 + 155549662 C
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159243 1 -    177848 C
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       323874 1 +    417917 c
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  60222 1 + 141252148 c
i nomLeu3.chrX                 I 1511 C 0
s otoGar3.GL873584             326727 1 +  11138919 c
i otoGar3.GL873584             C 0 I 3
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I
e macFas5.chrUn_AQIA01076778    16161 2172 +     34961 I

a score=441356.000000
s hg38.chrX_KI270880v1_alt     245197 516 +    284869 atctatctatctac------------cattctatctttc--------ggtctat--------------ctacctacctaccgacctatctac---cagtcatc-ttatctatcatattctctatctacctat-tatccacctacctatctacctacctaacaaccatctttctacc-----------------ata----------------------------------------------------------------ttctctg------------tctacctatccatccatccatc----tacctaccaatcatctttatctatcacattatctat--------------------------------ctatctattcatctatgtatct----atctacctacctagctaactatcttccaatcatcttatctgtcatattctcttatctacctat-----------------------------------------tatccatctacctatctacctacctaccaataatctttctacctatgtatcatattctcta------tatct---atctatctacctgtc------------tatc---------atatacctacctatctatctaccagtcatcttatctatccatca-tattatctgtctacctatttatctatccatctatgtatcaatcatc-tttatctatcatattatctatc--------atctatcatgtatcaatatatc-atctgtc
s panTro5.chrX                 429729 527 + 155549662 atctatccatctac------------cattctatctttc--------ggtctat--------------ctacctacctacctacctatctac---cagtcatc-ttatctatcatattctctatctacctat-tatccatctacctatctacctacctaccaaccatctttctacc-----------------ata----------------------------------------------------------------ttctctg------------tctacctatccatccatccatccatctacctaccaatcatctttatttatcatattatctat--------------------------------ctatctattcatctatgtatctgtctatctacctgcctagctaactgtcttccaatcatcttatctgtcatattctct-atctacctat-----------------------------------------tatccatctacctgtctacctacctaccaataatctttctacctatgtatcatattctcta------tatct---atctacctatctatca-----------tat----------atctacctacctatctatctaccagtcatcttatctatccatca-tattatctgtctacctatttatctatccatctatgtatcaatcatc-tttatctatcatattatctatc----tatcatctatcatgtatcaatatatc-atctgtc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159244 523 -    177848 atctatccatctac------------cattctatctttc--------ggtctat--------------ctacctacctacctacctatctac---cagtcatc-ttatctatcatattctctatctacctat-tatccatctacctatctacctacctaccaaccatctttctacc-----------------ata----------------------------------------------------------------ttctctg------------tctacctatccatccatccatc----tacctaccaatcatctttatctatcatattatctat--------------------------------ctatctattcatctatgtatctgtctatctacctgcctagctaactgtcttccaatcatcttatctgtcatattctct-atctacctat-----------------------------------------tatccatctacctgtctacctacctaccaataatctttctacctatgtatcatattctcta------tatct---atctacctatctatca-----------tat----------atctacctacctatctatctaccagtcatcttatctatccatca-tattatctgtctacctatttatctatccatctatgtatcaatcatc-tttatctatcatattatctatc----tatcatctatcatgtatcaatatatc-atctgtc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       323875 524 +    417917 atctat-tatCTAC------------CATtctatctttc--------ggtctatct----------acctacctacctacctacctatctac---cagtcatc-ttatctatcatattctctatctgcctat-tatccatctacctatctacctacctaccaaccgtctttctacc-----------------ata----------------------------------------------------------------tcctctg------------tctacctatccatccatccatc----tacctaccaatcatctttatctatcatat----tat--------------------------------ctatctattcatctatgtatctgtctatctacctacctagcta----tcttccaatcatcttatctgtcatatcctct-atctacctat----------------------------------------ctatccatctacctatctacctacctaccaataatccttctacatatgtatcatattctcta------tatct---atctatctacctatc------------tatc---------atatacctacctatctatctaccagtcatcttatctatccatcattattatctgtctacctatttatctatccatctatgtatcaatcatc-tttatctatcatattatctatctatctatcatctatcatgtatcaatatatc-atctgtc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  60223 651 + 141252148 atctatctatctacctacctaccagtcatcttatctatccatcatatactctgt--------------ctacctatctatccatccatctacctacaatcatctttatctatcttattatctatctatctatctatctatctatctatctatctatctatctatcatctatctatc-----------------tta------tatctaccta------------------acctaccagtcgtc----------------ttatctatccatcatattctctacctatctgtccatccatc----tacctatcaatcatc--tatctatcatattatctattatctatcatgtatcaatatatcatctatctgttatctatctatctatctatctatctatctatctatctatctatctatctatctatcatcttctctatcttattctgt-atctacctatctctctacctaccagtcatcttatctatccatcatatactctgtctacctatctatccatccatctacctacaatcatctt---tatctatcttattatctatctatctatctatcatctatctatctatc------------tatc---------atatatctacctacctatctaccagtcatcttatctatccatca-tattc----tctacctatctgtccatccatctacctatcaattatc---tatctatcatattatctatt--------atctatcatgtatcaatatatc-atctatc
i nomLeu3.chrX                 C 0 I 1
s macFas5.chrUn_AQIA01076778    18333 619 +     34961 atctatctatctat------------ctatctatcttct------atcatctatttatcatcaatcatctatctatctacctacctatcaac---caatcgtc-ttacctgtcatattctctatctagctat-tatccatctacctatctacctacctaccaatcatctttctacctatgtatcatattctctatatctatctatctacctatcatatacctacctacctatctaccagtcatcttatctatccatcacattatctg------------tctacctatctatccatccatc----tacctaccaatcatctttatctatcatattatctat--------------------------------ctatctatcta---atctatctatctatctatctatctatctatctatct-------atcttctctatcatattctgt-atctacctat----------------------------------------ctctctatttactgatcagttaatctatcaac-------------------catattctctatctatctatct---atctatctatctatcatcttctctatgtatcatattctctatctacatatctctctacctaccaatcagcttatctatcaacca-tattctctatctatctatgtatctatctatttatgtattatctatcatgtatcaat-agatcatctatc----tgtcatctatc-tatctctatctatctatctatc
i macFas5.chrUn_AQIA01076778   I 2172 I 1
s otoGar3.GL873584             326731 280 +  11138919 ------------------------------------------------atctat--------------ctatctatctgtctatctgtctgt----------c-t--------------tctatttgcctat-ttt---tctacctatct----------------tttatttgcc-----------------tat----------------------------------------------------------------ttttctg------------tctatatatctatctatcgtcc----aatctctcaatcgtc------tatcatctaatctat--------------------------------caatcaatt----------------------------------------------------------------------atctatccat-------------------------------------------------------------cACCT------------------------------------------AATCC---ACCTATCAACTAATC------------TATC-----------------ACctatccatctatggaccatctaatctatctgtca----------cctctctat-tatcta---atctaaaaatctgtcatc---tatccatcatctaatcaatc--------aacta------------------acctgtc
i otoGar3.GL873584             I 3 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e colAng1.NW_012115411v1       405044 13287 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=133345.000000
s hg38.chrX_KI270880v1_alt     245713  99 +    284869 atctatctatctatctatct---attt----tctctcatcttctctatcttattctctatctacctatctctctacctaccaatcagcttatctatc-aaccatatt
s panTro5.chrX                 430256  95 + 155549662 atctatctatctatctatct---atctattatctatcatcttctatatcttattctctatct--------ctctacctaccaatcagcttatctatc-aaccatatt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159767  91 -    177848 atctatctatctatctatct---atta----tctatcatcttctatatcttattctctatct--------ctctacctaccaatcagcttatctatc-aaccatatt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       324399  92 +    417917 atctatctatccatctatct---atta----tctatcatcttctctatcttattctctatct--------ctctacctaccaatcagcgtatctatcaaaccatatt
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  60875  96 + 141252148 atctatctatctatctatct---a-------tctatcatcttctctatcttattctgtatctacctatctctctacctaccaatcagcttatctatc-aaccatatt
i nomLeu3.chrX                 I 1 C 0
s macFas5.chrUn_AQIA01076778    18953 100 +     34961 ttctatctatctatctttct---atcta---tctatcatcttctctatcttattctctatctacctatctctctacctaccaatcagcttatctatc-aaccatatt
i macFas5.chrUn_AQIA01076778   I 1 I 65
s colAng1.NW_012115411v1       418331 103 +   1230721 atctatctatctatctatctatcatcta---tctatcatcttctctatcttattctctatctacctatctctctacctaccaatcagcttatctatc-aaccatatt
i colAng1.NW_012115411v1       I 13287 C 0
s otoGar3.GL873584             327011  32 +  11138919 --------------------------------------------------------------------------atagatctaccatctaatctata-caccatgca
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I
e macNem1.NW_012017243v1       418681 4824 +  25972781 I

a score=9560.000000
s hg38.chrX_KI270880v1_alt     245812 6 +    284869 atctat
s panTro5.chrX                 430351 6 + 155549662 atctat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159858 6 -    177848 atctat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       324491 3 +    417917 atc---
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  60971 6 + 141252148 ctctat
i nomLeu3.chrX                 C 0 I 63
s macFas5.chrUn_AQIA01076778    19118 6 +     34961 atctgt
i macFas5.chrUn_AQIA01076778   I 65 I 4
s macNem1.NW_012017243v1       423505 6 +  25972781 atctgt
i macNem1.NW_012017243v1       I 4824 C 0
s colAng1.NW_012115411v1       418434 6 +   1230721 ctctat
i colAng1.NW_012115411v1       C 0 I 1
s otoGar3.GL873584             327043 6 +  11138919 atctat
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I
e cerAty1.NW_012001098v1       289528 2474 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  16692 3577 -     38397 I

a score=3785.000000
s hg38.chrX_KI270880v1_alt     245818 1 +    284869 t
s panTro5.chrX                 430357 1 + 155549662 t
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159864 1 -    177848 t
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       324494 1 +    417917 t
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  61040 1 + 141252148 t
i nomLeu3.chrX                 I 63 C 0
s rheMac8.chrUn_NW_014831239v1  20269 1 -     38397 t
i rheMac8.chrUn_NW_014831239v1 I 3577 C 0
s macFas5.chrUn_AQIA01076778    19128 1 +     34961 t
i macFas5.chrUn_AQIA01076778   I 4 C 0
s macNem1.NW_012017243v1       423511 1 +  25972781 t
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292002 1 -   1025902 t
i cerAty1.NW_012001098v1       I 2474 C 0
s colAng1.NW_012115411v1       418441 1 +   1230721 t
i colAng1.NW_012115411v1       I 1 C 0
s otoGar3.GL873584             327049 1 +  11138919 c
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       261416 4952 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I

a score=930062.000000
s hg38.chrX_KI270880v1_alt     245819 239 +    284869 atctatctatctatctatctatctatctatctatctatcta-tatctacctatct-----atctatcatcttctctatcatattctgtatctacctgtctctctacctaccaatcggcttatctatcaaccatat--------------------------------------------------------------------tatctatctatc---tatctatctatctatctacctatctatc--------------------------------------atcttctc----tatcgtattctgtatctacctgtctctctacctaccaatcagcttatctatcaaccatattc
s panTro5.chrX                 430358 236 + 155549662 atctatctatctatctatctatctatctatc------------atctacctatct-----atctatcatcttctctatcgtattctgtatctacctgtctctctacctaccaatcagcttatctatcaaccatat--------------------------------------------------------------------tatctatctatc---tatctatctatctatctatctatctatct----------------------------atc--tatcatcttctc----tatcgtattctgtatctacctgtctctctacctaccaatcagcctatctatcaaccgtattc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 159865 242 -    177848 atctatctatctatctatctatctatctatc------------atcta-ctatct-----atctatcatcttctctatcgtattctgtatctacctgtctctctacctaccaatcagcttatctatcaaccatat--------------------------------------------------------------------tatctatctatc---tatctatctatctatctatctatctatctatctatc---------------------atc--tatcatcttctc----tatcgtattctgtatctacctgtctctctacctaccaatcagcttatctatcaaccgtattc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       324495 213 +    417917 atctatctatctatctatctatctatctatc-----------tatctatctacct-----atctatcatcttctctatcatattctgtatctacctgtctctctacctaccaatcagcttatctatcaaccatat--------------------------------------------------------------------tctctatctatc---tatctatctatctatctatctatctatc--------------------------------------atc-tatc----tatc-------------atctatctatctatctatctatctgtctatctatcatc--tatct
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  61041 316 + 141252148 atctatctatctatctatctatctatctatc------------atctatctatctatctaatctatcatcttctctatcgtattctgtatctacc--tctctctacctaccaatcagcttatccatcaaccatattctctatctatctatctatcatctatctatctatctatctatctatctatctatcatctatctatatctatctatctatc---tatctatctatctatctatctatctatctatctatcta-------------------atc--tatcatcttctc----tatcgtattctgtatctacctgtctctctacctaccaatcagcttatccatcaaccatattc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  20270 285 -     38397 atctatctatctatctatctatctatctatctatctatctatcatctatctatct-----atctatcatcttctctatcgtattctgtatctacctatctctctccttactgatcggcttatctgtcaaccatat--------------------------------------------------------------------tctctatccatctattatctatctatctatctatctatctatctatctatctatctatctctctatctatcaatcatcatcatcttctctatgtatcatattctctatctacgtatctctgtagctagcaatcagcgtatctatcaaccatattc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    19129 285 +     34961 atctatctatctatctatctatctatctatctatctatctatcaatcatctatct-----atctatcatcttctctatcgtattctgtatctacctatctctctccttactgatcggcttatctgtcaaccatat--------------------------------------------------------------------tctctatccatctattatctatctatctatctatctatctatctatctatctatctatctatctctctatcaatcatcatcatcttctctatgtatcatattctctatctacgtatctctgtagctagcaatcagcttatctatcaaccatattc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       423512 285 +  25972781 atctatctatctatctatctatctatctatctatctatctatcatctatctatct-----atctatcatcttctctatcgtattctgtatctacctatctctctccttactgatcggcttatctgtcaaccatat--------------------------------------------------------------------tctctatccatctattatctatctatctatctatctatctatctatctctctctctctctctctatctatcaatcatcatcatcttctctatgtatcatattctctatctacgtatctctgtagctagcaatcagcttatctatcaaccatattc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292003 261 -   1025902 atctatctatctatctatctatctatctatctatctatctatcaatcatctatct-----atctatcatcttctctatcatattctgtatctacctatctctctccttactgatcagcttatctgtcaaccatat--------------------------------------------------------------------tctctatccatctattatctatctatctatctatctatcta------------------------tctatcaatcatcatcatcttctctatgtatcatattctctatctacgtatctctgtagctagcaatcagcttatctatcaaccatattc
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       266368 270 -    350446 atctatctatctatctatctatctatctatctatctatctatcatctatctatct-----atctatcatcttctctatcatattctgtatctacctatctctctccttactgatcagcttatctgtcaaccatat--------------------------------------------------------------------tctctatccatctattatctatctatctatctatctatctatctatctatcta------------tctatca---atcatcatcttctctatgtatcatattctctatctacgtatctctgtagctagcaatcagcttatctatcaaccatattc
i manLeu1.NW_012108508v1       I 4952 I 32
s colAng1.NW_012115411v1       418442 249 +   1230721 atctatctatctatctatctatctatctatctatctatctatc---tatttatct-----atctatcatcttctctatcgtattctgtatctacctatctctctacttactgatcggcttatctatcaaccatat--------------------------------------------------------------------tctct----atctattatctatctatctatctatctatcaatc-----------------------------atcatcatcatcttctctatgtatcatattctctttctgtgtatctctgtacctaacaatcagcttatctatcaaccatattc
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327050 187 +  11138919 atctctctatcatctaatttaccaatctatcaatcaatccatcATCCAATAATAT-----ATGTACCGTCTAATCTATC--------------------------------AATAATCTAatctatctactattt--------------------------------------------------------------------aatctagctgtc--caatatatctatcacccaatctatcaata---------------------------------------------------------------atctacctatctat-tatctatctattatctaatctatcaaccatctac
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     225984 2870 -    811265 I

a score=1783661.000000
s hg38.chrX_KI270880v1_alt     246058 348 +    284869 tctatctatctatctatc------------------------------------tatctatctatctatctatctatctattatcttatctatctattatc--------tgtctatctacttgtcttcctatctatctGAAACTCTATGTTT-AAAACTCTGACTTCTAAAAACA-TTataatagac----attat-taatgaacacctattgtatgccagcctttgcttatcttatttctttttcttca-tgcctgttttgaaagatagatattatccctgttttgcaaagtgatgttcagaaataaatggtttgaca------agagtcacattagc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACTACACCAT
s panTro5.chrX                 430594 320 + 155549662 tctatctatctatctat----------------------------------------------------------------tatcttatctatctattatc--------tgtctatctacctgtcttcctatctatctGAAACTCTATGTTT-AAAACTCTGACTTCTAAAAACA-TTataatagac----attat-taatgaacacctattgtatgccagcctttgcttatcttatttctttttcttca-tgcctgttttgaaagataaatattatccctgttttgcaaattgatgttcagaaataaatggtttgaca------agagtcagattagc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATAAAGATAGCTTTACTACACCAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160107 348 -    177848 tctatctatctatctatc------------------------------------tatctatctatctatctatctatctattatcttatctatctattatc--------tgtctatctacctgtcttcctatctatctGAAACTCTATGTTT-AAAACTCTGACTTCTAAAAACA-TTataatagac----attat-taatgaacacctattgtatgccagcctttgcttatcttatttctttttcttca-tgcctgttttgaaagataaatattatccctgttttgcaaattgatgttcagaaataaatggtttgaca------agagtcagattagc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATAAAGATAGCTTTACTACACCAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       324708 321 +    417917 atcatctatctatctat----------------------------------------------------------------tatcttatctatctattatc--------tgtctatctacctgtcttcctatctatctGAAACTCTATGTTT-AAAACTCTGACTTCTAAAAACA-TTataatagac----attatgtaatgaacacctattgtatgccagcctttgcttatcttatttctttttcttca-tgcctgttttgaaagataaatattatccctgttttgcaaagtgatgttcagaaataaatggtttgaca------agagtcacattagc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACTACACCAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  61357 347 + 141252148 tctatctatctatctatc------------------------------------tatctatctatctatc-----------tatctaatctatctatcatcttatctattatctatctacctgtcctcctatctatctaAAACTCTACTTTT-AAAACACTGACTTCTAAAAACA-TTataatagac----attatttaatgaacacatattgtccgccagcctttgcttatcttatttctttttcttcattgcctattttgaaagataaatattatccctgttttgcaaagtgatgttcagaaataaatggtttgaca------agagtcacattagc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACTACACCAT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  20555 333 -     38397 tctatgtatgtatgtatg---------------------------------------------------------------tatct-atctatctatcatcttatctattatctatccacctgtcttcctatctatctaAAACTCTATGTTT-AAAACCTTGACTTCTAAAAACA-TTataatagac----cttatttaatgaacacgcattgtatgccaccctttgcttatcttatttctttttcttca-tgcccattttgaaagatacatattatccctgttttgcaaagtgatgttcagagataaatagtttgaca------agagtcacactagccagCCAATAAACCCTTCAGCCTAATTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTCACCATACCAT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    19414 327 +     34961 tctatgtatgtatgtatc---------------------------------------------------------------tatct-atctatctatcatcttatctattttctatccacctgtcttcctatctatctaAAACTCTATGTTT-AAAACCTTGACTTCTAAAAACA-TTataatagac----cttatttaatgaacacgcattgtatgccaccctttgcttatcttatttctttttcttca-tgcccattttgaaagatacgtattatccctgttttgcaaagtgatgttcagagataaatagtttgaca------agagtcacactagccagCCAATAAACCCTTCAGCCTGATTCAGTCTTGAAGCTTTCTGAGGATGA------CTTTACCATACCAT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       423797 327 +  25972781 tctatgtatgtatgtatg---------------------------------------------------------------tatct-atctatctatcattttatttattatctatccacctgtcttcctatctatctaAAACTCTATGTTT-AAAACCTTGACTTCTAAAAACA-TTataacagac----cttatttaatgaacacgcattgtatgccaccctttgcttatcttatttctttttcttca-tgcccattttgaaagatacatattatccctgttttgcaaagtgatgttcagagataaatagtttgaca------agagtcacactagccagCCAATAAACCCTTCAGCCTGATTCAGTCTTGAAGCTTTCTGAGGATGA------CTTCACCATACCAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292264 385 -   1025902 tctatgtatgtatgtatg--------tatgtatgtatgtatgtatctatctatctatctatctatctatctatctatc---tatct-atctatctatcatcttatctattatctatccacctgtcttcctatctatctaAAACTCTATGTTT-AAAACCCTGACTTCTAAAAACA-TTataatagac----cttatttaatgaacacccattgtatgccaccctttgcttatcttatttctttttcttca-tgcccgttttgaaagatacatattatccctgttttgcaaagtgatgttcagaaataaatagtttgaca------agagtcacactagccagtcaatAAACCCTTCAGCCTGATTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACCACCCCAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     228854 341 -    811265 tctatctatctatctatc------------------------------------------------tatctatctatc---tatct-atctatctatcatcttatctattatctatccacctgtcttcctatctatctaAAACTCTACGTTT-AAAACCCTGACTTCTAAAAACA-TTataatagac----cttatttaacgaacacccattgtatgccagcctttgcttatcttatttctttttcttca-cgcccattttgaaagatacgtattatccctgttttgcaaagtgatgttcagaaataaatggtttgaca------agagtcacactagc----caataaACCCTTCAGCCTGATTCAGTCTCGAAGCTTTCTGAGGATGAAGGTAGCTTTACCACCCTAT
i chlSab2.chrUn_KE147541v1     I 2870 C 0
s manLeu1.NW_012108508v1       266670 345 -    350446 tctatctatctatctatc------------------------------------------------tatctatctatc---tatct-atctatctatcatcttatctattatctatccacctgtcttcctatctatctaAAACTCTATGTTT-AAAACCCTGACTTCTAAAAACA-TTataatagac----cttatttaatgaacacccattgtatgccaccctttgcttatcttatttctttttcttca-tgcccgttttgaaagatacatattatccctgttttgcaaagtgatgttcagaaataaatagtttgaca------agagtcacactagccagtcaatAAACCCTTCAGCCTGATTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACCACCCCAT
i manLeu1.NW_012108508v1       I 32 C 0
s colAng1.NW_012115411v1       418691 389 +   1230721 tctatgtgtgtatgtatgtatgcatgtatgtatgtatgtatgtatgtatgtatctatctatctatctatctatctatc---tatct-atctatctatcatcttatctattatctatccacctctcttcctatctatctaAAACTCTATGTTT-AAAACCTTGACTTCTAAAAACA-TTataatagac----attatttaatgagcactcattgtatgccagcctttgcttatcttatttctttttcttca-tgcccgttttgaaagatagatattatccctgttttgcaaagtgatgttcagaaataaatgatttgaca------agagtcacactggc----caataaACCCTTCAGCCTGGTTCAGTCTTGAAGCTTTCTGAGGATGAAGATAGCTTTACCACACCAT
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327237 318 +  11138919 ----tgtatttatctaac-----------------------------------------------ctccccatctattatctatct-atatatctaccatc--------tctctat-------tctatctatgtatGTGCA----TGTATTTAAAAACTATGATTCCTAAAGAAATTTATAACGGACATTAATTATTTATTGAACAGCTATGACATGCCAGGCTTTGGTCACATTATTCCTTTTTCTTTA-TGCCCATTTTACAAGACAAATAGAATCTCTGCTTGGC---------------GATAAAAGAAGTGACACTTGTGAATGTCACATTAGC----TAACAAA-CCTTCAGTCCGGTTCATTCTGGAGGCTTTTTGAGGCTACAAATGGTTTCTCTATATCAT
i otoGar3.GL873584             C 0 I 24
e canFam3.chrX                 371358 2047 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I

a score=950277.000000
s hg38.chrX_KI270880v1_alt     246406 176 +    284869 TGGTTTACCAAGTAGGGATGATGTGAGGG--------TG-tttgtttgtttgtttgtttgagacagagtctcactctgtcaccgcaggctggggtgcagtggcgcgatctcggctca-tgcaacttccacctcccaggttcaagcaattctcctgcttcagcctcccaagtagctgggattacagg
s panTro5.chrX                 430914 176 + 155549662 TGGTTTACCAAGTAGGGATGATGTGAGGG--------TG-tttgtttgtttgtttgtttgagacagagtctcactctgtcaccccaggctggggtgcagtggcgcgatctcggctca-tgcaacttccacctcccaggttcaagcaattctcctgcttcagcctcccaagtagctgggatgacagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160455 176 -    177848 TGGTTTACCAAGTAGGGATGATGTGAGGG--------TG-tttgtttgtttgtttgtttgagacagagtctcactctgtcaccccaggctggggtgcagtggcgcgatctcggctca-tgcaacttccacctcccaggttcaagcaattctcctgcttcagcctcccgaatagctgggattacagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325029 176 +    417917 TGG-TTACCAAGTAGGGATGATGTGAGGG--------TGttttgtttgtttctttgtttgagacagagtctcactctgtcaccccaggctggggtgcagtggcgcgatctcggctca-tgcaacttccacctcccaggttcaagcaattctcctgcttcagcctcccaagtagctgggattacagg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  61704 184 + 141252148 TGGTTTACTTAGTAGGGATGATGTGAGGGTACCTGtttg-tttgtttgtttgtttatttgatacagagtctcactctgtcaccccacgctggagtgcagtggcatgatctcggctca-tgcaacctccgcctcccaggttcaagcaattctcctgcttcagcctcccaagtagctgggattacagg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  20888 184 -     38397 TGGTTTACCAAGTAGGGATGATGTGAGGGTACTTGTTTG-CTTGtttgtttgtttgtttgagacagagtctcactttgtcatcccagcctggagtgcgatggcgcgatctcggctca-tgcaacctctacttcctgggtccaagcaattctcctgcttcagcctcccaggtagctgggattacagg
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    19741 184 +     34961 TGGTTTACCAAGTAGGGATGATGTGAGGGTACTTGTTTG-CTTGtttgtttgtttgtttgagacagagtctcactttgtcatcccagcctggagtgcgatggcgcgatctcggctca-tgcaacctctacttcctgggtccaagcaattctcctgcttcagcctcccaggtagctgggattacagg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       424124 184 +  25972781 TGGTTTACCAAGTAGGGATGATGTGAGGGTACttgtttg-cttgtttgtttgtttgtttgagacagagtctcactttgtcatcccagcctggagtgcgatggcgcgatctcggctca-tgcaccctctacttcctgggtccaagcaattctcctgcttcagcctcccaggtagctgggattacagg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292649 184 -   1025902 TGGTTTACCAAGTAGGGATGATGTGAGGGTACttgtttg-tttgtttgtttgtttgtttgagacagagtctcactttgtcatcccagcctggagtgtgatggtgtgatctcggctca-tgcaacctctgattcctgggttcaagcagttctcctgcttcagcctcccaggtagctgggattacagg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229195 185 -    811265 TGGTTTATGAAGTAGGGATGAAGTGAGGGTACTTGTTTG-CTTGtttgtttgtttgtttgagacagagtctcactttgtcaccccagcctggagtgcgatggcgcaatctcggctcactgcaacctctacttcctgggttcaagcaattctcctgcttcagcctcccaggtagctgggagtacagg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       267015 176 -    350446 TGGTTTACCAAGTAGGGATTATGTGAGGGTA---------CTTGtttgtttgtttgtttgagacagagtctcactttgtcatcccagcctggagtgcgatggtgtgatctcggctcg-tgcaacctctgattcctgggttcaagcagttctcctgcttcagcctcccaggtagctgggattacagg
i manLeu1.NW_012108508v1       C 0 I 1363
s colAng1.NW_012115411v1       419080 176 +   1230721 TGGTTTACCAAGTAGGGATGATGTGAGGGTG---------tttgtttgtttgtttgtttgagacagagtctcactttgtcaccccagcctggagggcgatggcgcgatctcagctca-tgcaacctctgcctcccaggttcaagcagttctcctgcttcagcctcccaagtagctgggattacagg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             327555  24 +  11138919 I

a score=682712.000000
s hg38.chrX_KI270880v1_alt     246582 156 +    284869 aactcaccaccatgcctggctaa-tttttgtgtttttagtagagacggggtttcaccacgttggccaggctggtctcaaactcctgaccttaggtgatccacccacctcggcctcccaaattgctgggattacaggcatgagccaccgcgcccgacc
s panTro5.chrX                 431090 156 + 155549662 aactcaccaccatgcctggctaa-tttttgtgtttttagtagagacggggtttcaccacgttggccaggctggtctcaaactcctgaccttaggtgatccacccacctcggcctcccaaattgctgggattacaggcatgagccaccgctcccgacc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160631 156 -    177848 aactcaccaccatgcctggctaa-tttttgtgtttttagtagagacggggtttcaccacgttggccaggctggtctcaaactcctgaccttaggtgatccacccacctcggcctcccaaattgctgggattacaggcatgagccaccgctcccgacc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325205 157 +    417917 aactcaccaccatgcctggctaattttttgtgtttttagtagagacggggtttcaccatgttggccaggatggtctcaatctcctgaccttaggtgatccacctgcctcggcctcccaaattgctgggattacaggcatgagccaccgtgcccgacc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  61888 156 + 141252148 catccaccatcatgcctggctaa-tttttgtgtttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttaggtgctcctcccgcctcagcctcccaaagtagtgggattacaggcataagccaccgcgcctggcc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  21072 156 -     38397 cacctaccaccatgccaggataa-tgtttgtgtttttactagagacggggtgtcaccctgttggccaggctggtccgaaactcctgacctcaggtgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    19925 156 +     34961 cacctaccaccatgccaggataa-tgtttgtgtttttactagagacggggtgtcaccctgttggccaggctggtccgaaactcctgacctcaggtgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacagcgcccggcc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       424308 156 +  25972781 cacctaccaccatgccaggataa-tgtttgtgtttttactagagacggggtgtcaccctgttggccaggctggtccgaaactcctgacctcaggtgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292833 156 -   1025902 cacctaccaccatgcctggatag-tgtttgtgtttttagtagagacggggtgtcaccgtgttggccaggctggtctgaaactcctgacctcaggtgatcctcctgcttcagcctcccaaagtgctgggattacaggtgtgagcccccgtgcccggcc
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229380 156 -    811265 tacctaccaccatgcctggatag-tgtttgtgtttttagtagagacagggtgtcaccgtgttggccaggctggtctgaaactcctgatctcaggtgatcctcccacttcagcctcccaaagtgctgggattacaggcgtgagccaccgcacccggcc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       419256 156 +   1230721 cacctaccaccatgcccggataa-tgtttgtgtttttagtagagacggggtgtcaccgtgttggtcaggctggtctgaaactcctgacctcaggtgatcctcccgcttcagcctcccaaagtgctggaattacaggtatgagccaccgcacccggcc
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             327555  24 +  11138919 I

a score=798849.000000
s hg38.chrX_KI270880v1_alt     246738 174 +    284869 GAGGGTTCGTGTTTAAAATGCAGATTCCCTTAGACGTTGGTG------------------TGCCTGCACGTGCGTGtgactataaagaaacagaatgagaaa-aattgggggaggcgatag----aactattctgtatctcgaacatgatgccatttacatgtttcaaaaa-tgtgttcaagt---tcatcgaactgcata
s panTro5.chrX                 431246 174 + 155549662 GAGGGTTCGTGTTTAAAATGCAGATTCCCTTAGACGTTGGTG------------------TGCCTGCGCgtgtgtgtgactataaagaaacagaatgagaaa-aattgggg-aggcgatac----aactattctgtatctcgaacatgatgctatgtacatgtttcaaaaaatgtgttcaagt---tcatagaactgcata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160787 175 -    177848 GAGGGTTCATGTTTAAAATGCAGATTCCCTTAGACGTTGGTG------------------TGCCTGCACgtgtgtgtgactataaagaaacagaatgagaaa-aattgggggaggcgatag----aactattctgtatctcgaacatgatgctatttacatgtttcaaaaaatgtgttcaagt---tcatagaactgcata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325362 175 +    417917 GAGGGTTCGTGTTTAAAATGCAGATTCCCTCAGATGTTGGTG------------------TGCCTGCACgtgtgtgtgactataaagaaacagaatgagaaa-aattgggggaggtgatag----aactattctgtatctcgaacatgatgctatgtacatgtttcaaaaaatgtgttcaagt---tcatagaactgcata
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62044 178 + 141252148 GAGGGTATGTGTTTAAAACGCAGATTCCCTTAGATGTTGGTG------------------TGCCTGCATgtgtgtgtgactataaagaaatagaatgagaaa-aattgggggaggcgatgg----aactattctgtacctcaaacatgatgctatttacatgtttcaaaaaacgtgttcaagttcatcatagaactGCACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  21228 194 -     38397 GAGGGTACGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTGCCTGCCTGCATgtgcgtgtgactataaagaaatagaatgataaacaattgggggaggagatag----aactagtctctatcttgaacgtgatgctgtttacatgtttcaaaaaatgtgttcaaat---tcatagaactgcaca
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    20081 194 +     34961 GAGGGTACGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTGCCTGCCTGCATGTGCATGTGACTATAAAGAAATAGAATGATAAACAATTGGGggaggagatag----aactagtctctatcttgaacgtgatgctgtttacatgtttcaaaaaatgtgttcaaat---tcatagaactgcaca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       424464 194 +  25972781 GAGGGTACGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTGCCTGCCTGCATgtgcgtgtgactataaagaaatagaatgataaacaattgggggaggagatag----aactagtctctatcttgaacgtgatgctgtttacatgtttcaaaaaatgtgttcaaat---tcatagaactGCACA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       292989 194 -   1025902 GAGGGTATGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTGCCTGCCTGCATgtgtgtgtgactataaaaaaatagaatgataaaaaattgggggaggagatag----aactagtctctatcttgaacgtgatgctgtttacatgtttcaaaaactgttttcaaat---tcatagaacCGCACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229536 194 -    811265 GAGGGTACGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTGCCTGCCTGCATGTGTGTGTGACTATAAAGAAATAGAATGATAAAAAATTGGGGCAGGAGATAG----CACTAGTCTCTATCTTGAACGTGATGCTGTTTACATGTTTCAAAAAATGTGTTCAAAT---TCATACAACCGCACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       419412 194 +   1230721 AAGGGTACGTGTTGAAAATGCAGATTCCCTTAGATGTTGGTGTGCATGCACGTGTGTACCTGCCTGCATAtgtgtgtgactataaagaaatagaatgataaaaaattggggcaggagatag----aactagtctctatcttgaacgtgatgctgtttacatgtttcaaaaaatgtgttcgaat---tcatagaaccacaca
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327579 153 +  11138919 GGGGGTATTTGTT-AAAATGTAGACTCCCCCCTAGGTAGGGG----------------------TGTGTGTGTATGAGACTAGAAACAGATAGCATGGGGGA-CATTTGCCAGGGTGACGGAACTAACTATTCTGTACCTTGAAAGCAATG--------------------ATGTGTTAAAAT---CCACAGAAC-GCACA
i otoGar3.GL873584             I 24 C 0
e canFam3.chrX                 371358 2047 + 123869142 I
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I

a score=21996.000000
s hg38.chrX_KI270880v1_alt     246912 3 +    284869 tca
s panTro5.chrX                 431420 3 + 155549662 TCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160962 3 -    177848 TCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325537 3 +    417917 TCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62222 3 + 141252148 TCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  21422 3 -     38397 tca
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    20275 3 +     34961 tca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       424658 3 +  25972781 TCA
i macNem1.NW_012017243v1       C 0 I 741
s cerAty1.NW_012001098v1       293183 3 -   1025902 TCA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229730 3 -    811265 TCA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       419606 3 +   1230721 tca
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327732 3 +  11138919 TCA
i otoGar3.GL873584             C 0 I 3
s canFam3.chrX                 373405 3 + 123869142 tca
i canFam3.chrX                 I 2047 C 0
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I

a score=102039.000000
s hg38.chrX_KI270880v1_alt     246915 25 +    284869 tga--aaa-----tcaattttatagtatgata--
s panTro5.chrX                 431423 25 + 155549662 TGA--AAA-----TCAATTTTATAGTATGATA--
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160965 25 -    177848 TGA--AAA-----TCAATTTTATAGTATGATA--
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325540 25 +    417917 TGA--AAA-----TCAATTTTATAGTATGATA--
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62225 25 + 141252148 TGA--AAA-----TCAATTTTATAGTATGACA--
i nomLeu3.chrX                 C 0 I 113
s rheMac8.chrUn_NW_014831239v1  21425 25 -     38397 cga--aaa-----tcaattttatagtatgata--
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    20278 25 +     34961 caa--aaa-----tcaattttatagtgtgata--
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       293186 25 -   1025902 CGA--AAA-----TCAATTTTATAGTATGATA--
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229733 25 -    811265 CGA--AAA-----TCAATTTTATAGTATGATA--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       419609 25 +   1230721 cga--aaa-----tcagttttatagtatgata--
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327738 30 +  11138919 GGA--AAAAAATGTCTATtttactgtatagta--
i otoGar3.GL873584             I 3 C 0
s canFam3.chrX                 373408 29 + 123869142 tgaataaa-----taaattttaaaaattaattaa
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e macNem1.NW_012017243v1       424661 741 +  25972781 I

a score=675991.000000
s hg38.chrX_KI270880v1_alt     246940 171 +    284869 attTAAAATGTAATTTTTTTGAAAATGT--AA--AAAA---CAAAAAAAGCAGATTCCTAAATCCTA-TTCCAACCCTACTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACATAACGGACACACTTCCCGAGAATGTAAAGTCTTATTCTGCATTCATCAGAAGGTGAATGTCTAC
s panTro5.chrX                 431448 171 + 155549662 ATTTAAAATGTAATTTTTTTGAAAATGT--AA--AAAA---AAAAAAAAGCAGATTCCTAAATCCTA-TTCCAACCCTACTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACATAATGGACACACTTCCCAAGAATGTGAAGTCTTATTTTGCATTCATCAGAAGGTGAATGTCTAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 160990 171 -    177848 ATTTAAAATGTAATTTTTTTGAAAATGT--AA--AAAA---AAAAAAAAGCAGATTCCTAAATCCTA-TTCCAACCCTACTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACATAACGGACACACTTCCCAAGAATGTGAAGTCTTATTTTGCATTCATCAGAAGGTGAATGTCTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325565 173 +    417917 ATTTAAAATGTAATTTTTTTGAAAATGTAAAA--AAAA---AAAAAAAAGCAGATTCCTAAATCCTA-TTCCAACCCTACTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACATAACGGACATACTTCCCAAGAATGTAAAGTCTTATTTTGCATTCATCAGAAGGTGAATGTCTAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62363 168 + 141252148 atTTAAAATGTAAATTTTTTGAACACGT-------AAA---AAaaaaatgcagattcctaaatccta-ttccaagcctaccgaaacataatctc-----------------------tcttttaaacaagatgccACATAACAGACACACTTCCCAAGAATGTAAAGTCTTATTTTACATTCATCAGAAGGTGAATGTCTAC
i nomLeu3.chrX                 I 113 C 0
s rheMac8.chrUn_NW_014831239v1  21450 168 -     38397 attTAAAATGTAAAGGTTTCGAAAATGT--TG-----A---AAAAAAATGCAGATTCCTAAATCCTA-TTCCAAGCCTCCTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACGTAATGGACACAGATCCCAAGAATGTAAAGTCTTATTTTCCATTCATCAGAAGGTGAATGTCTAC
i rheMac8.chrUn_NW_014831239v1 C 0 I 521
s macFas5.chrUn_AQIA01076778    20303 168 +     34961 attTAAAACGTAAAGGTTTCGAAAATGT--TG-----A---AAAAAAATGCAGATTCCTAAATCCTA-TTCCAAGCCTCCTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACGTAATGGACACAGATCCCAAGAATGTAAAGTCTTATTTTCCATTCATCAGAAGGTGAATGTCTAC
i macFas5.chrUn_AQIA01076778   C 0 I 528
s cerAty1.NW_012001098v1       293211 168 -   1025902 ATTTAAAATGTAAAGTTTTCGAAAATGT--TA-----A---AAAAAGATGCAGATTCCTAAATCCTA-TTCCAAGCCTCCTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCACGTAATGGACACAGATCCCAAGAATGTAAAGTCTTATTTTCCATTCATCAGAAGGTGAATGTCTAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     229758 169 -    811265 ATTGAAAATGTGAAGTTTTCGAAAATGT--TG----AA---AAAAAAATGCAGATTCCTAACTCCTA-TTCCAAGCCTCCTGAAACATAATCTC-----------------------TCTTTTAAACAAGATGCCTCGTAATGGACACGGATCCCAAGAATGTAAAGTCTTATTTTCCATTCTTCAAAATGTGAATGTCTAC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s colAng1.NW_012115411v1       419634 173 +   1230721 attTAAAATGTAAAGTTTTCGAAAATGT--AAAAAAAA---AAAAAAATGCAGATTCCTAAATCCTA-TTCCAAGCCTCCTGAAACATAATCTC-----------------------TCTTTTAAACACGATGCCACTTAATGGACACAGATCCCAAGAATGTAAAGTCTTATTTTCCATTCGTCAAAAGGTGAATGTCTAC
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             327768 187 +  11138919 atataaaaaggaaaacttttaaacgtcc--ca------------aaaatgcagattcccgaatccta-ccccaagccttctgaaacataacctctgggaatgaggctggagaacctttgttttgagcaggctgacacgtgacgTCTCAGCCTCCCAAGACGGTGGGCTCTCATGCTGCATCTGTCAGCAGACGGATGTCTAC
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373437 189 + 123869142 attaaaaaaaTAAA----TTAAAAAAAT--AA--AAAAGCCAAAAAAATGCAAATTTGCAAGCCCTACTCCCCAGACTATAGTAACACAATCTCTGGAAAGGAGGCCAGAGAAGCTTTCCCCTAAACAGCATCCCTCATGATGGATAAACGTCCCCA-AATGTAAACCCACATTGTGCGTT----AGAGGCTGAACGTCAGC
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e macNem1.NW_012017243v1       424661 741 +  25972781 I

a score=4095.000000
s hg38.chrX_KI270880v1_alt     247111 1 +    284869 A
s panTro5.chrX                 431619 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161161 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325738 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62531 1 + 141252148 A
i nomLeu3.chrX                 C 0 C 0
s cerAty1.NW_012001098v1       293379 1 -   1025902 A
i cerAty1.NW_012001098v1       C 0 I 516
s chlSab2.chrUn_KE147541v1     229927 1 -    811265 a
i chlSab2.chrUn_KE147541v1     C 0 I 521
s colAng1.NW_012115411v1       419807 1 +   1230721 A
i colAng1.NW_012115411v1       C 0 I 7508
s otoGar3.GL873584             327955 1 +  11138919 A
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373626 1 + 123869142 A
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e rheMac8.chrUn_NW_014831239v1  21618 521 -     38397 I
e macNem1.NW_012017243v1       424661 741 +  25972781 I
e macFas5.chrUn_AQIA01076778    20471 528 +     34961 I

a score=2692.000000
s hg38.chrX_KI270880v1_alt     247112 2 +    284869 AG
s panTro5.chrX                 431620 2 + 155549662 AG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161162 2 -    177848 AG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325739 2 +    417917 AG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62532 2 + 141252148 AG
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             327956 2 +  11138919 AA
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373627 2 + 123869142 AA
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       267191 1363 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     229928 521 -    811265 I
e cerAty1.NW_012001098v1       293380 516 -   1025902 I
e colAng1.NW_012115411v1       419808 7508 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  21618 521 -     38397 I
e macNem1.NW_012017243v1       424661 741 +  25972781 I
e macFas5.chrUn_AQIA01076778    20471 528 +     34961 I

a score=105666.000000
s hg38.chrX_KI270880v1_alt     247114 19 +    284869 GCCTATTTTATTGAATTTT
s panTro5.chrX                 431622 19 + 155549662 GCCTATTTTATTGAATTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161164 19 -    177848 GCCTATTTTATTGAATTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325741 19 +    417917 GCCTATTTTATTGAATTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62534 19 + 141252148 GCCTATTTTATTGAACTTT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22139 19 -     38397 GCCTATTTTATTGAATATA
i rheMac8.chrUn_NW_014831239v1 I 521 I 3
s macFas5.chrUn_AQIA01076778    20999 19 +     34961 GCCTATTTTATTGAATATA
i macFas5.chrUn_AQIA01076778   I 528 I 3
s cerAty1.NW_012001098v1       293896 19 -   1025902 GCCTATTTTATTGAATTTT
i cerAty1.NW_012001098v1       I 516 I 1
s chlSab2.chrUn_KE147541v1     230449 19 -    811265 GCCTATTTTATTGAATTTT
i chlSab2.chrUn_KE147541v1     I 521 I 1
s manLeu1.NW_012108508v1       268554 19 -    350446 GCCTATTTTATTGAATTTT
i manLeu1.NW_012108508v1       I 1363 I 1
s colAng1.NW_012115411v1       427316 19 +   1230721 GCCTATTTTATTGAATTTT
i colAng1.NW_012115411v1       I 7508 C 0
s otoGar3.GL873584             327958 19 +  11138919 ACCTTACTTATCGGATTTT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373629 19 + 123869142 GACTTATTTATTGAGTATT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e macNem1.NW_012017243v1       424661 741 +  25972781 I

a score=448594.000000
s hg38.chrX_KI270880v1_alt     247133 81 +    284869 TTTTTTGTTACCTGCATGCATTC-TTTCCATCTTCAGCGAAAGATGCAAAACGTA--TATTTGTA--AATTAA--CTTTCCT------GAAACT
s panTro5.chrX                 431641 79 + 155549662 TTTTTT--TACCTGCATGCATTC-TTTCCATCTTCAGCGAAAGATGCAAAATGTA--TATTTGTA--AATTAA--CTTTCCT------GAAACT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161183 77 -    177848 TTTT----TACCTGCATGCATTC-TTTCCATCTTCAGCGAAAGATGCAAAATGTA--TATTTGTA--AATTAA--CTTTCCT------GAAACT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325760 78 +    417917 TTTTT---TACCTGCATGCATTC-TTTCCATCTTCAGTGAAAGATGCAAAACGTA--TATTTGTA--AATTAA--CTTTCCT------GAAACT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62553 80 + 141252148 TTTTTTT-TACCTGCATGCATTC-TTTCCATCTTCAGTGAAAGATGCAAAACGTA--TATTTGCA--AATTAA--CTTTTCT------GAAACT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22161 79 -     38397 TTTTTT--TACCTACGTGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i rheMac8.chrUn_NW_014831239v1 I 3 I 21
s macFas5.chrUn_AQIA01076778    21021 79 +     34961 TTTTTT--TACCTACGTGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i macFas5.chrUn_AQIA01076778   I 3 I 21
s macNem1.NW_012017243v1       425402 79 +  25972781 TTTTTT--TACCTACGTGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i macNem1.NW_012017243v1       I 741 I 100
s cerAty1.NW_012001098v1       293916 79 -   1025902 TTTTTT--AAACTACATGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i cerAty1.NW_012001098v1       I 1 I 21
s chlSab2.chrUn_KE147541v1     230469 79 -    811265 TTTTTT--AACCTACGTGCATTC-TTCCCAGCTTCAGTGAAAGATGCGAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i chlSab2.chrUn_KE147541v1     I 1 I 21
s manLeu1.NW_012108508v1       268574 78 -    350446 TTTTTT---ACCTACGTGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTG--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i manLeu1.NW_012108508v1       I 1 I 21
s colAng1.NW_012115411v1       427335 79 +   1230721 TTTTTT--AACCTACATGCATTC-TTCCCAGCTTCAGTGAAAGATGCAAAACGTA--TATTTGTA--AATTAA--CTTTTCT------GAAACT
i colAng1.NW_012115411v1       C 0 I 21
s otoGar3.GL873584             327977 78 +  11138919 ---TTT--AACCTACATTCATCCTTTCCCATCTCCAGTGGAAGATACGAGATTTA--TTTTTCTA--AATTAAACCTTGTTT------GAAGT-
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373648 85 + 123869142 ---TTT--TATCTAGACTTATCC--GCCATTCTCCAACAGGAGGTGCAAAATTTAACATTTTGTAGCAATTGT--TTTTTTTTTTTTCACGACC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I

a score=53355.000000
s hg38.chrX_KI270880v1_alt     247214 15 +    284869 CCCCTCTCCCCACCA-
s panTro5.chrX                 431720 15 + 155549662 CCCCTCTCACCACCA-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161260 15 -    177848 CCCCTCTCACCACCA-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325838 15 +    417917 CCCCTCTCACCACCA-
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62633 15 + 141252148 CCACTCTCACTACCA-
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22261 15 -     38397 CCACTCTCACTAGCC-
i rheMac8.chrUn_NW_014831239v1 I 21 C 0
s macFas5.chrUn_AQIA01076778    21121 12 +     34961 CCACTCTCACTA----
i macFas5.chrUn_AQIA01076778   I 21 I 3
s cerAty1.NW_012001098v1       294016 15 -   1025902 CCACTCTCACTAGCC-
i cerAty1.NW_012001098v1       I 21 C 0
s chlSab2.chrUn_KE147541v1     230569 15 -    811265 CCACTCTCACTAACA-
i chlSab2.chrUn_KE147541v1     I 21 C 0
s manLeu1.NW_012108508v1       268673 15 -    350446 CCACTCTCACTAGCC-
i manLeu1.NW_012108508v1       I 21 C 0
s colAng1.NW_012115411v1       427435 15 +   1230721 CCACTCTCACTAGCG-
i colAng1.NW_012115411v1       I 21 C 0
s otoGar3.GL873584             328055 15 +  11138919 CCGTGCTCACTCCCA-
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 373733 15 + 123869142 -CACCCCCACCCGCCC
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e macNem1.NW_012017243v1       425481 100 +  25972781 I

a score=3481855.000000
s hg38.chrX_KI270880v1_alt     247229 596 +    284869 TTGTTTCCCCGCTAAGTGCGATTTTTATCCACAGTGATCCTTCCATGGTTTTTGCCAAGTGGCAGC-----GTTTTGATCAAAAGGACGCCTTTCATGTCAAATAAATAAACCATCGCGTCTCACGGTTGTCCAGATTCCTGCTCGGTTTTTACAAAGCTTCTTTCAACTGGTGCCTGCAAGCCTTTCTCCGGGCATTTTCTTTCTACAACGGGTTGGATGTACACGGATCAAACTGAAAGGAGAGGGAGGAGGAAGCGTGCGTGATGAGCCAGGAAAGATGCTTTAGGTATGTGACTGTTAGAGCCCGGTGACATGAGGTGATACAGAGTCTGTGACTGCACTGTGCCAACGCCCTCGTGAAAATCAATATTCCTG-TAACTGATTCTGCAACTTGGAATGACGTGttttcaattaaggcactgttgacattgggggccaggtaattctccgtggtgggagctgtcctatatactgtaggatactcagcagcgtccctgagct-ctacccact-agaagctagtagtatc--tgtcacct---cctccctggtcgtgataaccagaaatgtcttcagtcattgcacagtgtcccccatggggcagaat
s panTro5.chrX                 431735 596 + 155549662 TTGTTTCCCTGCTAAGTGCAATTTTTATCCACAGTGATCCTTCCATGGTTTTTGCCAAGTGGCAGC-----GTTTTGATCAAAAGAACGCCTTTCATGTCAAATAAATAAACCATCGCGTCTCACGGTTGTCCAGATTCCTGCTCGGTTTTTACAAAGCTTCTTTCAATTGGTGCCTCCAAGCCTTTCTCCGGGCATTTTCTTACTACAACGGGTTGGATGTACACGGATCAAACTGAAAGGAGAGGGAGGAGGAAGCGTACCTGATGAGTCAGGAAAGATGCTTTAGGTATGTGACTGTTAGAGCCCGGTGACATGAGGTGATACAGAGTCTGTGACTGCACTGTGCCAACGCCCTCGTGAAAATCAATATTCCTG-TTACTGATTCTGCAACTTGGAATGAGGTGttttcaattaaggcactgttgacattgggggccaggtaattctccgtggtgggagctgtcctatatactgtaggatactcagcagcattcctgagct-ctacccact-aaaagctagtagtatc--tatcacct---cctccctggtcgtgataaccagaaatgtcttcagtcattgcacagtgtcccccatggggcagaat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161275 596 -    177848 TTGTTTCCCCGCTAAGTGCAATTTTTATCCACAGTGATCCTTCCATGGTTTTTGCCAAGTGGCAGC-----GTTTTGATCAAAAGAACGCCTTTCATGTCAAATAAATAAACCATCGCGTCTCACGGTTGTCCAGATTCCTGCTCGGTTTTTACAAAGCGTCTTTCAATTGGTGCCTCCAAGCCTTTCTCAGGGCATTTTCTTTCTACAACGGGTTGGATGGACACGGATCAAACTGAAAGGAGAGGGAGGAGGAAGCGTACGTGATGAGTCAGGAAAGATGCTTTAGGTATGTGACCGTTAGAGCCCGGTGACATGAGGTGATACAGAGTCTGTGACTGCACTGTGCCAACGCCCTCGTGAACATCAATATTCCTG-TAACTGATTCTGCAACTTGGAATGAGGTGttttcaattaaggcactgttgacattgggggctaggtaattctccgtggtgggagctgtcctatatactgtaggatactcagcagcattcctgagct-ctacccact-agaagctagtagtatc--tatcacct---cctccctggtcgtgataaccagaaatgtcttcagtcattgcacagtgtcccccatggggcagaat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       325853 594 +    417917 TTGTTTTTCCGCTAAGTGCAA-TTTTATCCACAGTGATCCTTCCATGGTTTTTGCCAAGTGGCAGC-----GTTTTTATCAAAAGAACGCCTTTCCTGTCAAATAAATAAACCATCGCGTCTCACGGTTGTCCAGATTCCTGCTCGG-TTTTACAAAGCTTCTTTCCATTGGTGCCTCCAAGCCTTTCTCCGGGCATTTTCTTTCTACAACGGGTTGGATGTACACGGATCAAACTGAAAGGAGAGGGAGGAGGAAGCATACGTGATGAGTCAGGAAAGACGCTTTAGGTATGTGACTGTCAGAGCACAGTGACACGAGGTGATACAGAGTCTGTGACTGCACTGTGCCAACACCCTCGTGAAAATCAATATTCCTG-TAACCGATTCTGCAACTTGGAATGAGGTGttttcaattaaggcactgttgacattgggggccaggtaattctccgtggtgggagctgtcctatatactgtaggatactcagcagcgtccctgagct-ctacccact-agaagctagtagtaac--tatcacct---cctccctggtcgtgataaccagaagtgtcttcactcattgcacagtgtcccccatggggcagaat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  62648 496 + 141252148 TTGTTTCTCTGCTAAGTGGAA-TTTTATCCACAGCGATCCTTCCATGGTTTTTGCCATGTGGCAGC-----GTTTTTATCAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGCATCTCATGGTTGTCCAGATTCCTGCTCGG-TTTTACAAAGCTTCTTTCAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACAACGGGTTGGATGTACACGGATCAAACTGAAAGGAGAGGGAGGAGGAAGCATATGTGATGAGTCAGGAAAGAC---------------------------------------------------------------------------------------------------ACTGATTCTGCAACTTGGAATGAGGTGttttcaactaagccacagttgacattgggggccaggtaattctccgtggtgggagctgtcctatatactgtaggatactcagcagcgtccctgagct-ctactcact-agaagctggtagtttc--tctcacct---cctgcctggtcgtgacgagcagaaatgtcttcagtcattgcacagtgtcccccatggggcagaCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22276 599 -     38397 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGC-TTTTTTTTTTAACAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACAACGGGTTGGATGTACAGGGATCAAACGGAAAGCAGAGGGAGGAGGAGGCCTAGGTGATGAGTCAGGAAAGATGCTTTAGGTGTCTGAATGTTAGAGCACAGTGACACAAGATAATACAGAGTCTGTGACTGCACCATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTGCTGATTCTGCAACTTGGAATGAGGTgtttccaacggaggcactgttgacatttggggccaggtaattcactgtgttgggatctgtctcacatactgtaggatactgaaccgtgtccctgagct-ctacccactaagaaactagtagtgtc--taccacct---cctccctgctcgtgataactagaaatgtcttcagtcattgcacaatgtcacccatggggcagaat
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    21136 599 +     34961 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGC-TTTTTTTTTTAACAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACGACGGGTTGGATGTACAGGGATCAAACGGAAAGCAGAGGGAGGAGGAGGCCTAGGTGATGAGTCAGGAAAGATGCTTTAGGTGTCTGAATGTTAGAGCACAGTGACACAAGATAATACAGAGTCTGTGACTGCACCATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTGCTGATTCTGCAACTTGGAATGAGGTgtttccaacggaggcactgttgacatttggggccaggtaattcaccgtgttgggatctgtctcacatactgtaggatactgaaccgtgtccctgagct-ctacccactaagaaactagtagtgtc--taccacct---cctccctgctcgtgataactagaaatgtcttcagtcattgcacaatgtcacccatggggcagaat
i macFas5.chrUn_AQIA01076778   I 3 C 0
s macNem1.NW_012017243v1       425581 600 +  25972781 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGCTTTTTTTTTTTAACAAAAGAACACGTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACGACGGGTTGGATGTACAGGGATCAAACGGAAAGCAGAGGGAGGAGGAGGCCTAGGTGATGAGTCAGGAAAGATGCTTTAGGTGTCTGAATGTTAGAGCACAGTGACACAGGATAATACAGAGTCTGTGACTGCACCATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTGCTGATTCTGCAACTTGGAATGAGGTgtttccaacggaggcactgttgacatttggggccaggtaattcaccgtgttgggatctgtctcacatactgtaggatactgaaccgtgtccctgagct-ctacccactaagaaactagtagtgtc--taccacct---cctccctgctcgtgataactagaaatgtcttcagtcattgcacaatgtcacccatggggcagaat
i macNem1.NW_012017243v1       I 100 C 0
s cerAty1.NW_012001098v1       294031 599 -   1025902 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGC-TTTTTTTTTAAACAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACGACGGGTTGGATGTACAGGGATCAAACGGAACGCAGAGGGAGGAGGAGGCCTAGGTGATGAGTCAGGAAAGATGCTTTAGGTGTCTGAACGTTAGAGCACAGTGACACAAGATAATACAGAGTCTGCGGCTGCACCATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTACTGATTCTGCAACTTGGAATGAGGTgtttccaacaaaggcactgttggcatttggggccaggtaattcaccgtgttgggatctgtctcacatgctgtaggatactgaaccgtgtccctgagct-ctacccactaagaaactagtggtgtc--taccacct---cctccctgctggtgataagtagaaatgtcttcagtcattgcacaatgtcacccatggggcagaat
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     230584 596 -    811265 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGC----TTTTTTTAACAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCCAGCCTTTCTCCAGGCATTTTCTTTCTACGACGGGTTGGATGTACACGGATCAAACGGAAAGCGGAGGGAGGAGGCGGCCTAGGTGATGAGTCAGGAAAGAAGCTTTAGGTGTCTGAATGTCAGAGCACAGTGACACCAGATAATACACAGTCTGCGACTGCACGATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTACTGATTCTGCAACTTGGAATGAGGTgtttccaacaaaggcactgttgacctttggggtcaggtaattctccctgttgggatctgtctcacatactgtaggatactgaaccgtgtccctgagct-ctacccactaagaagctagtggtgtc--taccacct---cctccctgctcgtgataaccagaaatgtcttcagtcattgcataatgtcacccatggggcagaat
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       268688 599 -    350446 TTGTTTCTCCGCTAAGTACGA-TTTTATCCACAGCCATCCTTCCACGGTTTTTGCCATGTGGCAGC-TTTTTTTTTTAACAAAAGAACACCTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTTAAATTGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACGACGGGTTGGATGTACAGGGATCAAACGGAAAGCAGAGGGAGGAGGAGGCCTAGGTGATGAGTCAGGAAAGATGCTTTAGGTGTCTGAACGTTAGAGCACAGTGACACAAGATAATACAGAGTCTGCGGCTGCACCATGCCAACACCCTGGTGAAAATCGATATTCCTC-TTACTGATTCTGCAACTTGGAATGAGGTgtttccaacaaaggcactgttggcatttggggccaggtaattcaccgtgttgggatctgtctcacatgctgtaggatactgaaccgtgtccctgagct-ctacccactaagaaactagtagtgtc--taccacct---cctccctgctcatgataaccagaaatgtcttcagtcattgcgcaatgtcacccatggggcagaat
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       427450 596 +   1230721 TTGTTTCTCCGCTGAGTACGA-TTTTATCCACAGCCATCCTTCCACGGCTTTTGCCATGTGGCAGC-----ATTTTTATCAGAAGAACACGTTTCATGTCAAATAAATAAACCATCGAGTATCACGGTTGTCCAGATTCCTGTTCAG-TTTTACAAAGCTTCTTCAAATCGGTGCCTCCAAGCCTTTCTCCAGGCATTTTCTTTCTACGAGGGTTTGGATGTACACGGATCAAACAGAAAGGAGAGGGAGGAGGAGGCCTGGGTGATGAGTCAGGAAAGATGCTTTAGGTATGTGAATGTTAGAGCACAGCGACAAGACGTAATACAGAGTCTGCGACTGCACCATGCCAACATCCTGGTGAAAATCGATATTCCTCTTTACTGATTCTGCAACTTGGAATGAGGTGttttcaacgaaggcactgatgacatttggggacaggtagttctccgtgttgggatctgtcctatatactgtaggatactgagccgtgtccctgagtt-ctacccactaagaagctagtagtgtc--caccacct---cctccctgatcgtaataaccagaaatatcttcagtcattgcacaatgtcacccatagggcaaaat
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             328070 559 +  11138919 TTGTTTCTCTGCTCTGTGGAA-TTTGATCAATAGCGAGTCTTTCATGG-TTCTGCCGCGTGGCAGT-----GTTCTTATCAAAGGAACACCTTTCAAGTGGAATGAATAAACCATCGTGCATCCCGGCCGTCCAGATCCTTGCTTAG-TTTTACAAAGCTGCTTTCAATCTGAACCTCTAAGCGTTTCTCCAGGCATTTCCTTTCTGCAACTGGTTGGATATTCACACATCAAGTTGAAAAGAGAGGCAAGAAAAA----AGGTGATGCGTCCAGAAA-ACACTTTCGGTAGCGAAGGGTGGGAGCCCAGAGCCACGGGGTGGTGCAGAGCCCACGAGTGTAC-ATGTCAATAGCCTGGAGAAAAGGAGTATTTCCC-TCAGTCATTCTGCTTCTTTAAATGAGGGGTCT-CAACGACACCACTGTTGACATTTGGGACTAGAGA-----------------CCATTCTGTGTGCTGTGGGGTGTTGACAGGTGTCCGTGGGGT-GCATCTGCC-ACACGTCTGTAGCACC--TG---------CGTCCCTGG--GGGATGA-TGAAAACATCTCTAGACACTGCCAAGTGTCACCAA-AGGGCAGGAT
i otoGar3.GL873584             C 0 T 62884
s canFam3.chrX                 373748 576 + 123869142 TTGTTTCTCTGCTCTGTGGAA-GTTGAACAAAAGCGATCCCTTCATGG-TTTTGCCACGTGGTGGT-----GTCCGTGTGAAAACATCACGTTTCAAGTCAAATAAATAAACCATTGTGCATCACGGCTGTCCAGATCCTTCTTTAG-TTTTACAAAGCTCCTTTAAATAGGTGCCTCCAAGCATTTCTGCGGGCATTTCCTTTCTACCACCGGTTGGATGTGTACAGATGAAATGG----GAGAGGGAAGAAGACGGGCAGGTGACGAGACAGGGAGGGTG-----GGTGTCT--------GAGCAGAGTGACACGGCCGGGCAC-GGGCTTGTGTCTGCACCAT---AAGGGCCTCCTGCAAATGCATATCTCTC-TCGAAGACTCTGACACCTCCAATAagggtttctcgatcacagcaccgctgacgtctagggccaggacgttctcggttgtgggg--cgtcgtgggcactgcggggtgttgagcagcgtctctgttccacctcccacc-acctgccagaagcatccttgtcccctttcccccccacatagtgacaatcagaaatgtccccaggcattgccgggtgtgccctggagggcaagaa
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I

a score=33122.000000
s hg38.chrX_KI270880v1_alt     247825 6 +    284869 TCCGAC
s panTro5.chrX                 432331 6 + 155549662 TCCGAC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161871 6 -    177848 TCCTAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       326447 6 +    417917 TCCGAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63144 6 + 141252148 TCTGAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22875 6 -     38397 TCCGAC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    21735 6 +     34961 TTCGAC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426181 6 +  25972781 TCCGAC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       294630 6 -   1025902 TCCGAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     231180 6 -    811265 TCCGAC
i chlSab2.chrUn_KE147541v1     C 0 I 505
s manLeu1.NW_012108508v1       269287 6 -    350446 TCCGAC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428046 6 +   1230721 TCCGAC
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 374324 6 + 123869142 cttgcc
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             328629 62884 +  11138919 T

a score=16181.000000
s hg38.chrX_KI270880v1_alt     247831 3 +    284869 TCA
s panTro5.chrX                 432337 3 + 155549662 TCA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161877 3 -    177848 TCA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       326453 3 +    417917 TCA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63150 3 + 141252148 TCA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22881 3 -     38397 TCA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    21741 3 +     34961 TCA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426187 3 +  25972781 TCA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       294636 3 -   1025902 CCA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       269293 3 -    350446 TCA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428052 3 +   1230721 TCA
i colAng1.NW_012115411v1       C 0 C 0
s canFam3.chrX                 374330 3 + 123869142 cca
i canFam3.chrX                 C 0 I 1835
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             328629 62884 +  11138919 T
e chlSab2.chrUn_KE147541v1     231186 505 -    811265 I

a score=24121.000000
s hg38.chrX_KI270880v1_alt     247834 26 +    284869 A---ATTATTATTA-TTATTAtttttgagg
s panTro5.chrX                 432340 26 + 155549662 A---ATTATTAttc-ttattatttttgagg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161880 29 -    177848 Aattattattatta-ttattatttttgagg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       326456 26 +    417917 A---attattatta-ttattattattgagg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63153 27 + 141252148 A---ATTACTATTAttttttttttttgaga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22884 18 -     38397 C-----------tt-ttttttttttggaca
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    21744 18 +     34961 C-----------tt-ttttttttttggaca
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426190 20 +  25972781 C---------tttt-ttttttttttggaca
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       294639 19 -   1025902 A----------TCt-ttttttttttggaca
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       269296 18 -    350446 A-----------tt-ttttttttttggacg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428055 19 +   1230721 t----------ttt-tttttttttttgaga
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             328629 62884 +  11138919 T
e chlSab2.chrUn_KE147541v1     231186 505 -    811265 I

a score=1481091.000000
s hg38.chrX_KI270880v1_alt     247860 279 +    284869 cagagtcttgctctgtcacccaggctggagtgcagtggcacaatctctgctcactgcaacctccgcctcccagg-------ttcatgacattctcctgcctcagcctcctgagtagctgggtttacaggcgcctgccaccatgcccagctaa--------ttttttgtattttt-agaagagacagggtttcaccctgttaaccagggtggtctcgatctcctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagtcaccacgctcggccTC
s panTro5.chrX                 432366 280 + 155549662 cagagtcttgctctgtcacccaggctggagtgcagtggcacaatctctgctcactgcaacctccgcctcccagg-------ttcatgacattctcctgcctcagcctcccaagtagctgggtttacaggcgcccgccaccgtgcccagctaa-------tttttttgtattttt-agaagagacagcgtttcaccgtgttaaccaggatggtctcgatttcttgacctcgtgatctgtccacctcagcctcccaaagtgctgggattacaggcgtgagtcaccacgctcggccTC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 161909 280 -    177848 cagagtcttcctctgtcacccaggctggagtgcagtggcacaatctctgctcactgcaacctccgcctcccagg-------ttcatgacattctcctgcctcagcctcccaagtagctgggtttacaggcacccgccaccgtgcccagctaa-------tttttttgtattttt-agaagagacagcgtttcaccatgttaaccaggatggtctcgatctcctgacttcgtgatctgtccacctcggcctcccaaagtgctgggattacaggcgtgagtcaccacgcttggccTC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       326482 277 +    417917 cagagtcttgctctgtcacccaggctggagtgcagtggcacaatctctgctcactgcaacctccgcctcccagg-------ttcatgacattctcctgcctcagcctcccaagtagctgggtttacaggcgcccgccaccatgcccagctaa---------tttttgtattttt-agaagagacggggtttcaccgtgttaaccaggatggtctcgatctcctgacctcgtgatctgcccacctcggcctcccgaagtgctgggattacaggcgtgagtcaccacgctc-gCCTC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63180 279 + 141252148 cagagttttgctctgtcacccaggctggagtgcagtggcacaatctcggctgactgcaacctccgcctcccagg-------ttcacgccgttctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccatgcctggctaa--------ttttttgtattttt-agaagagacggggtttcaccgtgttaaccaggatggtctcgatctcctgaccttgtgatctgcccgcctcagcctcccaaagtgctgggattacagacgtgagccaccgcgctcggccTC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  22902 280 -     38397 cagagtctcactctgccccccaggctggagtgcaaaggcacaatctcagctcactgcaacctctgcctcccagg-------ttcatgccatcctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgcctggctaa-------tttttttgtattttt-aggggagatggggtttcaccgtcttaaccaggatggtctcgatctcccgatctcgtgatctgcccacctcggcctcacgaagtgctgggatgaccggggtgagccaccgcgcccggccTC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    21762 280 +     34961 cagagtctcactctgccccccaggctggagtgcaaaggcacaatctcagctcactgcaacctctgcctcccagg-------ttcatgccatcctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgcctggctaa-------tttttttgtattttt-aggggagatggggtttcaccgtcttaaccaggatggtctcgatctcccgatctcgtgatctgcccacctcggcctcacgaagtgctgggatgaccggggtgagccaccgcgcccggcctc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426210 280 +  25972781 cagagtctcactctgccccccaggctggagtgcaaaggcacaatctcagctcactgcaacctctgcctcccagg-------ttcatgccatcctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgcctggctaa-------tttttttgtattttt-aggggagatggggtttcaccgtcttaaccaggatggtctcgatctcccgatctcgtgatctgcccacctcggcctcacgaagtgctgggatgaccggggtaagccaccgcgcccggccTC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       294658 282 -   1025902 cagagtctcactctgccccccaggctggagtgcgaaggcaccatctcagctcactgcaacctccgcctcccagg-------ttcatgccattctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgcctggctaa-----tttttttttgtattttt-aggggagatggggtttcaccgtcttaaccaggatggtctcgatctcccgatctcgtgatctgcccacctcggcctcccgaagtgctgggatgaccggcgtgagacaccgcgcccggccTC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     231691 280 -    811265 cagagtctcactctgccccccaggctggagtgcaaaggcacaatctcagctcactgcaacctccgcctcccagg-------ttcatgccattctcctgcctcagcctcctgagtagctgggatgacaggtgccccccaccacgcccggctaa-------tttttttgtattttt-aggggagatggggtttcaccgtcttaaccaggatggtctcgatctcccgatctcgtgatctgcccacctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggccTC
i chlSab2.chrUn_KE147541v1     I 505 C 0
s manLeu1.NW_012108508v1       269314 283 -    350446 cagggtctcactctgccccccaggctggagtgcaaaggcacaatctcagctcactgcaacctctgcctcccagg-------ttcatgccattctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgcctggctaa----ttttttttttgtattttt-aggggagatggggtttcaccatcttaaccaggatggtcttgatctcctgatctcgtgatctgcccaccttggcctcccgaagtgctgggatgaccggcgtgagccaccgcgcccggccTC
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428074 294 +   1230721 cagagtctcactctgcccccctagctggagcgcaaaggcacaatctcagctcactgcagcctctgcctcccatgcctctccctcatgccattctcctgcctcagcctcctgagtagctgggatgacaggtgcccgccaccacgtccagctatttttttttttttttgtatttttcaggggagatggggtttcactgtcttaaccaggatggtctcgatctcccgatcttgtgatctgcccacctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcaccc-gCCTC
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             328629 62884 +  11138919 T

a score=2531365.000000
s hg38.chrX_KI270880v1_alt     248139 447 +    284869 GgactcaaatttttctccactcttctcatgtccagagaagacagcaaaggcataatttgtattaactttgagattaccaataaattttggtgaataagcaaatttgcaaatacagagtctgtccacaatgaggaAGTACTGTACCCATGAAGACTACAGGGCCCTAAAAAATTGCTATGCAATGGGATCCCTAATATTG-CTCTCTCAGGTGAGTAGGAGCTGCCCCCATtgtggtctgaatgtagggctctttcccaaattcttatgttgaactcttcatccccaagatgatgacgttaagaagtggggcctttggggggtgatgaggtcat---gagagcggagccttctgaatgggattagtgcccttataaaagggatcctagagagctcacttgtcccttccaccgtgtgagg--------acacaccaagaagtcgccgtctatgaaacagga
s panTro5.chrX                 432646 447 + 155549662 GgactcaaatttttctccactcttctcatgtccagagaagacagaaaagacataatttgtattaactttgagattaccaataaattttagtgaataagcaaatttgcaaatacagagtctgtccacaatgaggaAGTACTGTACCCATGAAGACTCCAGGGCCCTAAAAAATTGCTATGCAGTGGGATCCCTAATATTG-CTCTCTCAGGTGAGTAGGAGCTGCCCCCATtgtggtctgaatgtagggttctttcccaaattcttatgttgaactcttcatccccaagatgatgacgttaagaagtggggcctttggggggtgatgaggtcat---gggagcggagccttctgaatgtgattagtgcccttataaaagggatcctagagagctcacttgtcccttccaccgtgtgagg--------acacaccaagaagtcaccgtctatgaaacagga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 162189 447 -    177848 GgactcaaatttttctccactcttctcatgtccagagaagacagcaaagacataatttgtattaactttgagattaccaataaattttagtgaataagcaaatttgcaaatacagagtctgtccacaatgaggaAGTACTGTACCCATGAAGACTCCAGGGCCCTAAAAAATTGCTATGCAGTGGGATCCCTAATATTG-CTCTCTCAGGTGAGTAGGAGCTGCCCCCATtgtggtctgaatgtagggttctttcccaaattcttatgttgaactcttcatccccaagatgatgacgttaagaagtggggcctttggggggtgatgaggtcat---gggagcggagccttctgaatgggattagtgcccttataaaagggatcctagagagctcacttgtcccttccaccgtgtgagg--------acacaccaagaagtcaccgtctatgaaacagga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       326759 447 +    417917 GgactcaaatttttctccactcttctcatgtccagagaagacagcaaagacataatttgtattaactttgagattaccaataaattttagtgaataagcaaatttgcaaatacagagtctgtccacaatgaggaAGTACTGTACCCCTGAAGACTACAGGGCCCTGAAAAATTGCTATGCAGTGGGATCCCTAATATTG-CTCTCTCGGGTGAGTAGGAGCTGCCCCCATtgtggtctgaatgtagggttctttcccaaattcttatgttgaactcttcatccccaagatgatgacgttaagaagtggggcctttggggggtgatgaggtcat---gagagcagagccttctgaatgggattagtgcccttataaaagggatcctagagagctcacttgtcccttccaccgtgtgagg--------acacaccaagaagtcaccgtctatgaaacagga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63459 445 + 141252148 Tgactcaaattgttctccactcttctcatgtccagaaaagacagcaaagacgtaattagtattaagttggagattaccaataaattttagtgaataagcaaatctgcaaat--agagtctgtccacaatgaggaaggactgTACTCCTGAAGTCTACAGGGCCCTAAAACATTGCTATGCAGTGGGATCCCTAATATTG-CTCTCTCAGGTGAGTAGGAGCTGCCCCCATtgtggtcggaatgtgggggtcctttccaaattctcatattgaactcttcacccccaaggtgatggcgttaagaagtggggcctttgggggttgatgaggtcat---gagaggggagccttctgaatgggattagtgcccttataaaagggatcctagagagctcacttgccccttccaccatgtgagg--------acacaccatgaagtcaccatctatgaaacagga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  23182 444 -     38397 GgacttcaatgtttcttcactcttctcacgtccagaaaacacagcaaagacataattagcattaactttgagattaccaataaattttagtgaataagcaaatttgaaaatacagagtgtgtccacaatgaggaAGTATTGTATTCTTGAAGACTACAGGGCCCTAAAACATTACTATGTAATGGGATCCCTAATATTG--TCTCTCATGTG-GTAGAAGCTGCCCTCATTGtggtctgaatgtaggggtccttcccaaattcttatgttgaactcttcaccccc-aggtgatggtgttaagaggtggggcctctgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagctcccttgccccttccaccatgtgagg--------acacaccaagaggtcaccatctatgaaacagga
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    22042 444 +     34961 ggacttcaatgtttcttcactcttctcacgtccagaaaagagagcaaagacataattagcattaactttgagattaccaataaattttagtgaataagcaaatttgaaaatacagagtgtgtccacaatgaggaAGTATTGTATTCTTGAAGACTACAGGGCCCTAAAACATTACTATGTAATGGGATCCCTAATATTG--TCTCTCATGTG-GTAGAAGCTGCCCTCATTGtggtctgaatgtaggggtccttcccaaattcttatgttgaactcttcaccccc-aggtgatggtgttaagaggtggggcctctgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagctcccttgccccttccaccatgtgagg--------acacaccaagaggtcaccatctatgaaacagga
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426490 444 +  25972781 GgacttcaatgtttcttcactcttctcacgtccagaaaagacagcaaagacctaattcgcattaactttgagattaccaataaattgtagtgaataagcaaatttgaaaatacagagtgtgtccacaatgaggaAGTATTGTATTCTTGAAGACTACAGGGCCCTAAAACATTACTATGTAATGGGATCCCTAATATTG--TCTCTCATGTG-GTAGAAGCTGCCCTCATtgtggtgtgaatgtaggggtccttcccaaattcttatgttgaactcttcaccccc-aggtgatggtgttaagaggtggggcctctgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagctcccttgccccttccaccatgtgagg--------acacaccaagaggtcaccatctatgaaacagga
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       294940 447 -   1025902 GgacttcaatgtttcttcactcttctcatgtccagaaaagacagcaaagacatcattagcattaactttgagattaccaatacattttagtgaataagcaaatttgaaaatacagagtgtgtccacaatgaggaAGTATTGTATTCCTGAAGACTACAGGGCCCTAAAACATTACTATGTAATGGGATCCCTAATATTGTCTCTCTCATGTGAGTAGGGGATGCCCTCATtgtggtctgaatgcaggggtccttcccaaattcttatgttgaactcttcatcccc-aggtgatggtattaagaggtggggcctctgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagctcccttgccccttccaccatgtgagg--------acacaccaagaggtcaccgtctataaaacagga
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     231971 455 -    811265 GgacttcaatgtttcttcactcttctcatgtccagaaaagacagcaaagacataattagcattaactttgagattaccaatacattttagtgaataagcaaatttgaaaatacagagtgtgtccacaatgaggaAGTATTGTATTCCTGAAGACTACAGGGCCCTAAAACATTACTATGTAATGGGATCCCTAATATTGTCTCTCTCATGTGAGTAGGGGCTGCCCTCATtgtggtctgaatgtaagggtccttcccaaattcttatgttgaactcttcaccccc-aggtgatgtggttaacaggtggggcctttgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagttcacttaccccttttacctagaaagttcacttacccacaccaagaagtcactgtctatgaaacagaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       269597 444 -    350446 GgactctgatgtttctccactcttctcctgtccagaaaagacagcaaagacataattagcattaactttgagattaccaataaattttagtgaataaacaaatttgaaaatacagagtgtttccacaatgaggaAGTATTGTGTTCCTGAAGACTACAGGACCCTAAAACATTACTATGTAATGGGATCCCTAATATTG--TCTCTCATGTG-GTAGGAGCTGCCCTCATtgtggtctgaatgcaggggtccttcccaaattcttatgttgaacttttcaccccc-aggtgatggtgttaagaggtggggcctttgaggtgtgatgaggtcat---gagagtggagccttctgaatgggattagtgcccttagaaaagggatcctagaaagctcccttgccccttccaccatgtgagg--------acacaccaagaggtcaccgtctataaaacagga
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428368 446 +   1230721 AgactccaatgtttctgcactcttctcaggtccagaaaaggcagcaaagacataattagcattaactttgagattaccaatgaattttagtgaataagcaaatttgaaaatacagagtgtgtccacaaagaggaAGTATTGTATTCCTGAAGACTCCAGGGCCCTAAAACATTACTATGGAATGGGATCCCTAATATTCTCTCTCTCATGTG-GTAGGAGCTGCCCTCATtgtggtctgaatgcaggggtccttccaaaattcttgtgttgaactcttcaccccc-aggtgacggcattaagagttggggcctttcaggtgtgatgtggtcat---gagagtggagccttctgaatgggattagtgcccttagaaacgggatcctacagagctcacttgccccttccaccgtgtgagg--------acacaccaagaagtcatcgtctatgaaacagga
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             265745 433 +  11138919 ggacttgaatttttctctgttctgcttgtgtgcacaaattacagtgaaagcaccatgagtgtggactttggcattaacaggcaaggttgatgagtagacgaatttgcaaatTCTAGGACAGCCC---TAGAGGATGGGCCGTACTTGTGGAAACCACAAGGCCCCAGTGTACCCTTATGAAGTTGGATCCAGGGAGTTA-CAATCTCAGGTCAGTAGGAGCTCCCCCCActgtgggctgaatgtggagttcc-ccccaaattcctagggtgaaagc-taacccttaaggtggcagcattaggaagtgggagctttaggaggccatgaggtcttgcaggtggtggagcctgatggctgggatcagcgtccttatgtgagggg------------ccctcaccccttccaccatgtgagg--------acacagtaagaagcctccatctatgaactaaga
i otoGar3.GL873584             T 62884 I 63716
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I

a score=1458440.000000
s hg38.chrX_KI270880v1_alt     248586 284 +    284869 TAGGTAGGtgggtggatggatgagtgaatggatggatggaagagtggacaaatggatggatgatggatgggtgagtgggtggattaattgttgtatagatggatagatggttggatggatagacggatgagca-gatgaatggatggatga------------------------------------atggatgagtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattaatggttac--------atagatggctggatgggctgacggatgcatgatggataagcagatgagtggatggatgaatgaatg
s panTro5.chrX                 433093 283 + 155549662 TAGGTAGGtgggtggacggatgagtgaatggatggatggaagagtggacaaatggatggatgatggatgggtgagtgggtggattaattgttgtatagatggatagatggttggatggatagatggat--gcatgatggatgagcagatga------------------------------------atggattagtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattaatggttac--------atagatggctggatgggctgacggatgcatgatggataaacagatgagtggatggatgaatggatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 162636 283 -    177848 TAGGTAGGtgggtggacggatgagtgaatggatggatggaagagtggacaaatggatggatgatggatgggtgagtgggtggattatttgttgtatagatggatagatggttggatggatagatggat--gcatgatggatgagcagatga------------------------------------atggattagtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattaatggttac--------atagatggctggatgggctgacggatgcatgatggataaacagatgagtggatggatgaatggatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       327206 312 +    417917 TAGGTAGGtgggtggacggatgagtgaatggatggatggaagagtggacaaatggatggatgatggatgggtgagtgagtggattaattgttgtatagatagataggtggttggatggatagatggat--gcatgatggatgagcagatgaatggatggatgaatggatgggtggatgggtggatggatggatggatggatagatggatggaagtgtggacagacggatggttgagtaggtggattaatgattgt--------atagatggctggatgggtagatggatgcatgatggatgagtagatgaatagatggatga-------
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  63904 280 + 141252148 tatgTAGGtgggtggatggatgagtgaatggatggatggaagagtggacaaatggatggatgatggatgggtgagtgggtggattaatggttgtatggatggatagatggttggatgcatagatggat--gcatgacggatgagcagatga--------------------------------atggatggatgaatggatgggtggatggaagagtggacacatggatggctgagtgggtggattaatgattgt--------atagatggctggatggacagatggatgcatgatggatgagcagatgagtggatggatga-------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  23626 307 -     38397 TAGGTAAGtgggtggatagatgagtgaatggatggatggtagagaggacaaatggatggatgatggatgggtgggagggtgaattaatgattgtatagacggatagatggttggatggatagatgaat--gcatgacggatgagcagatga--------------------atggatggatgaagggatggatggatggatggatgggtggaagagcggacagatggatgggtgagtgggtggattaacggttgtatagatggatagatggctggatggatagatggatgcatgatggatgagtagatgagtgggtggatgaatggatg
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    22486 307 +     34961 TAGGTAAGtgggtggatagatgagtgaatggatggatggtagagaggacaaatggatggatgatggatgggtgggagggtgaattaatgattgtatagacggatagatggttggatggatagatgaat--gcatgacggatgagcagatga--------------------atggatggatgaagggatggatggatggatggatgggtggaagagcggacagatggatgggtgagtgggtggattaacggttgtatagatggatagatggctggatggatagatggatgcatgatggatgagtagatgagtgggtggatgaatggatg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       426934 299 +  25972781 TAGGTAAGtgggtggatagacgagtgaatggatggatggtagagaggacaaatggatggatgatggatgggtgggagggtgaattaatgattgtatagacggatagatggttggatggatagatgaat--gcatgatggatgagcagatga--------------------atggatggatgaagggatggatggatggatggatgggtggaagagcggacagatggatgggtgagtgggtggattaacggttgt--------atagatggctggatggatagatggatgcatgatggatgagtagatgagtgggtggatgaatggatg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       295387 307 -   1025902 TAGGTAAGtgggtggatagatgagtgaatggatggatggtagagaggacaaatggatggatgatggatgggtgggagggtgaattaatgattgtatagacggatagatggtgggatggatagatgaat--gcatgacggatgagcagatga--------------------atggatggatgaatggatggatgggtggatgggtggatggaagagtggacggatggatgggtgagtgggtggattaacggttgtatagatggatagatggctggatggatagatggatgcatgatggatgagtagatgagtgggtggatgaatggatg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     232426 292 -    811265 taggTAAGtgggtggatagatgagtgaatggatggatggaagagaggacaaatggatggatgatagatgggtgggagggtgaattaatggttgtattgatggatagatggttggatggatagatgaat--gcatgacggatgagcagatga--------------------gtggatggatgaa------------tggatgggtggatggaagagtggacagatggatgggtgactgggtggattaatggttgtatagatggacagatggctggatggatagatggatgcatgatgaatgaaaagatgagcagatgagtggatgg---
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       270041 307 -    350446 TAGGTAAGtgggtggatagatgagtgaatggatggatggtagagaggacaaatggatggatgatggatgggtgggagggtgaattaatgattgtatagacagatagatggttggatggatagatgaat--gcatgacgaatgagcagatga--------------------atggatggatgaatggatggatgggtggatgggtggatggaagagtggacggatggatgggtgagtgggtggattaatggttgtatagatggatagatggctggatggatagatggatgcatgatggatgagtagatgagtggatggatgaatggacg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       428814 277 +   1230721 TAGGTAAGCGGGtggatggatgagtgaatggatggatgaaagagaggataaatggatggatgatggatgggtgagagggtaaagtaatggttgtatagacggatagatggttggatggatagatgaat--gcatgacggatgagcagatga--------------------atggatggatg------------ggtggatgggtggatggaagagtggacagatggatgggtgagtgggtagattaatggttgt--------atagatggctggatggacagatgggtgcatgatggatgagcagatgagtggatgga----------
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I

a score=22065.000000
s hg38.chrX_KI270880v1_alt     248870 12 +    284869 ggtgaatgg--------atg
s panTro5.chrX                 433376 12 + 155549662 ggtgaatgg--------atg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 162919 12 -    177848 ggtgaatgg--------atg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       327518  3 +    417917 -----------------atg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  64184  7 + 141252148 -----atgg--------atg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  23933 12 -     38397 gatgggtgg--------atg
i rheMac8.chrUn_NW_014831239v1 C 0 I 363
s macNem1.NW_012017243v1       427233 12 +  25972781 gatgggtgg--------atg
i macNem1.NW_012017243v1       C 0 I 363
s cerAty1.NW_012001098v1       295694 12 -   1025902 gatgggtgg--------atg
i cerAty1.NW_012001098v1       C 0 I 367
s chlSab2.chrUn_KE147541v1     232718  3 -    811265 -----------------atg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       270348 20 -    350446 gatggatgggtgtatgtatg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       429091 10 +   1230721 --tgaatgg--------atg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C

a score=197476.000000
s hg38.chrX_KI270880v1_alt     248882  92 +    284869 gatgggtgggtgggtggatggaagagtggacagatggatgggtgagtgggtggactaaaggttgt--------atagatggctagatggacagat-----------ggatg
s panTro5.chrX                 433388 103 + 155549662 gatgggtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattcaaggttgt--------atagatggctagatggacagatggatgcatgacggatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 162931 103 -    177848 gatgggtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattcaaggttgt--------atagatggctagatggacagatggatgcatgacggatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       327521  92 +    417917 gatgggtggatggatggatggaagagtggacagatggatgagtgagtgggtagattaatggttgt--------atagatggttggatggatagat-----------ggatg
i gorGor5.CYUI01015925v1       C 0 I 3
s nomLeu3.chrX                  64191  92 + 141252148 gatggacgaatggatggatggaagagtggacagatggatgggtgagttggtggattaatgattgt--------atagatggctggatggatagat-----------ggatg
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1     232721 103 -    811265 aatgaatggatggatggatggaagagtggacagatggatgagtgagtgcgtggattaatggttgt--------atagatggctggatggatagatgggtgcatgatggatg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       270368 103 -    350446 gatggatggttggatggatagctggatggatggatggatggatgggtgggtggattaatggttgt--------gtagatggctggatggatagatggatgtatgatggatg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       429101 111 +   1230721 gatgggtggatgggtggatggaagagtggacagatggatgggtgagtgggtggattaatgattgtatagatggatagatggatggatggatagatggatgtatgacaaatg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793   0 +     34961 C

a score=10623.000000
s hg38.chrX_KI270880v1_alt     248974 12 +    284869 agcagatgagtg
s panTro5.chrX                 433491 12 + 155549662 agcagatgagtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 163034 12 -    177848 agcagatgagtg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s nomLeu3.chrX                  64283  3 + 141252148 --cat-------
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1     232824 12 -    811265 agcagatgtgtg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       270471 12 -    350446 agcagatgagtg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       429212 12 +   1230721 aaaagatgagtg
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C
e gorGor5.CYUI01015925v1       327613  3 +    417917 I

a score=32043.000000
s hg38.chrX_KI270880v1_alt     248986 28 +    284869 gatggatgaatggatggatgaatggatg
s panTro5.chrX                 433503 28 + 155549662 gatggatgaatggatggatgaatggatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 163046 28 -    177848 gatggatgaatggatggatgaatggatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       327616 24 +    417917 ----gatggatgagtagatgaacagatg
i gorGor5.CYUI01015925v1       I 3 C 0
s nomLeu3.chrX                  64286 24 + 141252148 ----gatggatgagtagatgaatggatg
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1     232836 28 -    811265 aatggatggatggatgggtggatgggtg
i chlSab2.chrUn_KE147541v1     C 0 I 8
s manLeu1.NW_012108508v1       270483 28 -    350446 gatggatggatggacggatgggtggatg
i manLeu1.NW_012108508v1       C 0 I 585
s colAng1.NW_012115411v1       429224  3 +   1230721 gat-------------------------
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C

a score=159889.000000
s hg38.chrX_KI270880v1_alt     249014 97 +    284869 gagggatggatggatggatagatggatggaagtgtggacagacggatgggtgagt-gggtggattaatgattgtatagatggctggatgggtagatgg
s panTro5.chrX                 433531 97 + 155549662 gagggatggatggatggatagatggatggaagtgtggacagacggatgggtgagt-gggtggattaatgattgtatagatggctggatgggtagatgg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 163074 97 -    177848 gagggatggatggatggatagatggatggaagtgtggacagacggatgggtgagt-gggtggattaatgattgtatagatggctggatgggtagatgg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       327640 98 +    417917 gatgaatggatgggtggatggatggatggaagagtggacagatggatgagtgagtggggtagattaatggttgtatagatggctggatgggtagatgg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  64310 97 + 141252148 gatgaatggatgggtgaatggatggatggaagagtggacagatggatgagtgagt-gggtggattaatggttgtgtagatggttggatggatagatgg
i nomLeu3.chrX                 C 0 C 0
s chlSab2.chrUn_KE147541v1     232872 97 -    811265 gatggatgggtggatgggtggatggatagctggatgggtggatggatggatgggt-gggtggattaatggttgtgtagatggctggatggatagatgg
i chlSab2.chrUn_KE147541v1     I 8 C 0
s colAng1.NW_012115411v1       429227 94 +   1230721 ---ggatgaaaggatggatggatggatggaagagtggacagacggatgggtgagt-gggtggattaatggttgtatagatggctggatggatagatgg
i colAng1.NW_012115411v1       C 0 T 3376
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C

a score=78184.000000
s hg38.chrX_KI270880v1_alt     249111  76 +    284869 atgcatgatggatgagtagatgaatagacggatgaatggatgggtggatgg----------------------------------------------------------------atggatggaagagtggacagatgga
s panTro5.chrX                 433628  76 + 155549662 atgcatgatggatgagtagatgaatagatggatgaatggatgggtggatgg----------------------------------------------------------------atggatggaagagtggacagatgga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 163171  76 -    177848 atgcatgatggatgagtagatgaatagatggatgaatggatgggtggatgg----------------------------------------------------------------atggatggaagagtggacagatgga
i panPan2.chrUn_NW_014024190v1 C 0 I 748
s gorGor5.CYUI01015925v1       327738  76 +    417917 atgcatgatggatgagtagatgaacagatggatgaatggatgggtggatgg----------------------------------------------------------------atggatggaagagtggacagatgga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  64407  80 + 141252148 atgcatgacggatgagcagatatgtggatggatggaatgatgggtggatgg------------------------------------------------------------gtgtgtggatggatggatgggtagatgga
i nomLeu3.chrX                 C 0 I 16
s chlSab2.chrUn_KE147541v1     232969 140 -    811265 atgtatgatggatgagcagatgagtggatggatggatggatggacggatgggtagatgcttaactggatgggtggatggatgggtggatgggtagatggatggatggatgggtggatggatggaagagtggacagaagga
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793   0 +     34961 C

a score=67432.000000
s hg38.chrX_KI270880v1_alt     249187 87 +    284869 tgagtgagtgggtagattaatggttgtatagatggttggatggatagatggatgcatgatggatgagcagatgcgtggatggatgga
s panTro5.chrX                 433704 87 + 155549662 tgagtgagtgggtagattaatggttgtatagatggttggatggatagatggatgcatgatggatgagcagatgcatggatggatgga
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       327814 87 +    417917 tgggtgagtgggtagattaatggttgtatagatggctggatgggtagatggatgtatgatggatgagtagatgaatagatggatgga
i gorGor5.CYUI01015925v1       C 0 I 321
s nomLeu3.chrX                  64503 85 + 141252148 tggatggatgggtggattaatggttgtatagatggctgcatggatagaaggatgtatgatggataagcagatgactggatggatg--
i nomLeu3.chrX                 I 16 C 0
s chlSab2.chrUn_KE147541v1     233109 87 -    811265 tgggtgagttggtggattaatggttgtatagatggctggatggatagatggatgcatgatggatgagcagatgtgtgaatggatgga
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C
e panPan2.chrUn_NW_014024190v1 163247 748 -    177848 I

a score=179500.000000
s hg38.chrX_KI270880v1_alt     249274 306 +    284869 at--------------------------------------------gatgggtggatgggtgtatgca----tggatggatagatggatagctggatgag----tggatggatggatgggtggattaatggttgtatagatggctggatgggtagatggatgtatgatggataagcagatgactggatggatggatgggtggatgg-----gtgtatggatggatggatgggtggatggatagctggatgggtggatggatgggtgaattaatggatgatggatgatggatgagtgaatgggtagatgggtgggtggatagat-gataaatgggaatgggtggatggatgggt-----ggtagatagat
s panTro5.chrX                 433791 350 + 155549662 atgatgggtggatgggtgtatggatggatggatagatggatagctggatgggtggatgggtgtatgga----tggatggatagatggatagctggatggg----tggatggatggatgggtggattaatggttgtatagatggctggatgggtagatggatgtacgatggataagcagatgactggatggatggatgggtggatgg-----gtgtatggatggatggatgggtggatggatagctggatgggtggatggatgggtgaattaatggatgatggatgatggatgagtgaatgggtagataggtgggtggatagat-gataaatgggaatgggtggatggatgggt-----ggtagatagat
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       328222 303 +    417917 -------------------------------------------atggatgggtggatgggtgtatgga----tggatggatagatggatagctgga--------tggatggatggatgggtggattaatggttgtatagatggctggatgggtagatggatgtatgatggataagcagatgactggatggatggatgggtggatga-----gtgtattgatggatggatgggtggatggatagctggatgggtggatggatgggtgaaataatggatgatggatgatggatgagtgaatgcgtagatgggtgggtggatagat-gataaacgggaatgagtggatggatgggt-----ggtggatagat
i gorGor5.CYUI01015925v1       I 321 C 0
s nomLeu3.chrX                  64588 272 + 141252148 ----------------------------------------------gatgggttgatgggtgtatgtatgtgtggatgagtggatggatagctgga--------tgggtggatggatgggtgaattaatggat-------------------------gatggatgatggatgagtgaatgggtggatgggtgggtagatagatgataaacgggaatgggtggatggatgggtgg-tagatagatggatgagtggatagatg---------------gatacatgatagatgggtggatgggtggatcaatgggcagatagatggatgagtgg--ataggtgtatagatgggtgTAGGGGTAGACAAAT
i nomLeu3.chrX                 C 0 M 778
s chlSab2.chrUn_KE147541v1     233196 322 -    811265 --------------------tggatgggtgtatggatggatggatggatgaatggatggatggatgggtagctggatgggtggatagatagctggatgggtgaatggatggatgggtgggtggattaatggttgtgtagatggctggatggatagatggatgtatgatagatgagcagatgagtggatggatggatggacggatgg-----gtggatgcttaactggatgggtggatggatggttgggtggattaatggat----------------gatggatgatggatgagtgaatgggtggatgggttcttagatagat-gataaatgggagtgggtggacggatgggt-----ggtagacagat
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793   0 +     34961 C
e panPan2.chrUn_NW_014024190v1 163247 748 -    177848 I

a score=28002.000000
s hg38.chrX_KI270880v1_alt     249580 56 +    284869 tgatgagtggatagatggatacatgatagatgggtggatgggtggatcaatgggca
s panTro5.chrX                 434141 56 + 155549662 ggatgagtggatagatggatacatgatagacgggtggatgggtggatcaatgggca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       328525 56 +    417917 ggatgagtggacagatggatacatgatagatgggtggatgggtggatcaatgggca
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     233518 56 -    811265 ggatgagtggatggaaggttacttgatagatgggtggatgggtggatcagtgggca
i chlSab2.chrUn_KE147541v1     C 0 I 4
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e macFas5.chrUn_AQIA01076778    22793  0 +     34961 C
e panPan2.chrUn_NW_014024190v1 163247 748 -    177848 I

a score=85777.000000
s hg38.chrX_KI270880v1_alt     249636 132 +    284869 gatagatggatgag----tggataggtgtatagatggg-tgtaggggtagaggaatggattgatgatggatgggatgatggatggataatgaatgagtggatgggtg----gatggatgaatgggtgaatgagtggatgga
s panTro5.chrX                 434197 132 + 155549662 gatagatggatgag----tggataggtgtatagatggg-tgtaggggtagacaaatggattgatgatggatgggatgatggatggataatgaatgagtggatgggtg----gatggatgaatgggtgaatgggtggatgga
i panTro5.chrX                 C 0 I 24
s gorGor5.CYUI01015925v1       328581 129 +    417917 gatagatggatgag----tggataggtgtatagatgggttgtaggggtagacgaatggattgatgatggatgggattatggatggataatgaatgagtggatgggtg----gatggatgaatgggtgaatggatgga----
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    22793 140 +     34961 gatgggtggatgagtggctggataggtatgtagatgga-tgtatgagtagacggatggatggatgacagatgggatgatggatggataatgaatgagtggataggtggatggatggatgaatgggtgaatgggtggatgga
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     233578 113 -    811265 gatgagtggatgaatggctggataggtgtgtagatgga-tgtatgagtagac----gggtggatgacggatgggatgatggatggata-----------------------ggtgtatgaatggatgaatgggtggatgga
i chlSab2.chrUn_KE147541v1     I 4 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I
e panPan2.chrUn_NW_014024190v1 163247 748 -    177848 I

a score=99395.000000
s hg38.chrX_KI270880v1_alt     249768 103 +    284869 tgggtggatgagtggatcaatgggcaggtggatgagtggatgaaaggttagatgagtggatggatgggtgtatgagtagatagatggatgaatgatgaatgat
s panTro5.chrX                 434353 103 + 155549662 tgggtggatgagtggatcaatgggcaggtggatgagtgaatgaacggttagatgagtggatggatgggtgtatgagtagatagatggatgaatgatgaatgag
i panTro5.chrX                 I 24 C 0
s panPan2.chrUn_NW_014024190v1 163995 103 -    177848 tgggtggatgagtggatcaatgggcaggtggatgagtgaatgaacggttagatgagtggatggatgggtgtatgagtagatagatggatgaatgatgaatgag
i panPan2.chrUn_NW_014024190v1 I 748 C 0
s gorGor5.CYUI01015925v1       328710  69 +    417917 tgggtggatgggtggatggatg----ggtggatgagtggatcaatgggcaggtggatgga-----------------------gtggatgaacggt-------
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    22933 103 +     34961 tgggtggatgagtggatcaatgggcagatggatgagtggatgaatggttagatggatggatggatgtgtgtatgagtagatagatggatgtaaaacgaatgag
i macFas5.chrUn_AQIA01076778   C 0 I 94
s chlSab2.chrUn_KE147541v1     233691 103 -    811265 tgggtggatgagtggatcaatgggcagatggatgagtggatgaatggttagatgggtggatggatgtgtgtatgagtagatagatggatgaaaaacgaatgag
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e manLeu1.NW_012108508v1       270511 585 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I

a score=27440.000000
s hg38.chrX_KI270880v1_alt     249871 27 +    284869 tggatagatggatgggtgggtggatgc
s panTro5.chrX                 434456 27 + 155549662 tggatagatggatgggtgggtggatgc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164098 27 -    177848 tggatagatggatgggtgggtggatgc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       328779  3 +    417917 ------------------------tac
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    23130 27 +     34961 tggatagatggatgggtgggtggatgg
i macFas5.chrUn_AQIA01076778   I 94 I 11
s chlSab2.chrUn_KE147541v1     233794 27 -    811265 tggataaatggattggtgggtggatgg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       271096 24 -    350446 tggatagatggatgggtgggtgga---
i manLeu1.NW_012108508v1       I 585 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M
e otoGar3.GL873584             266178 63716 +  11138919 I
e cerAty1.NW_012001098v1       295706 367 -   1025902 I
e colAng1.NW_012115411v1       429321 3376 +   1230721 T
e rheMac8.chrUn_NW_014831239v1  23945 363 -     38397 I
e macNem1.NW_012017243v1       427245 363 +  25972781 I

a score=304988.000000
s hg38.chrX_KI270880v1_alt     249898 74 +    284869 atggatggatggatgggtatatgagtagatggatggatggtggatggataaatggatggatgat----ggatgagtta
s panTro5.chrX                 434483 74 + 155549662 atggatggatggatgggtatatgagtagatggatggatggtggatggataaatggatggatgat----ggatgaatta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164125 74 -    177848 atggatggatggatgggtatatgagtagatggatggatggtggatggataaatggatggatgat----ggatgaatta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       328782 47 +    417917 atgagtggatggatgggtgtatgagtagatag-------------------atggatgaatgat----g--------a
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24308 74 -     38397 atggatggatggatgggtatatgagtagatggatggatgatggatggatagatggatggatgat----ggatgagtta
i rheMac8.chrUn_NW_014831239v1 I 363 C 0
s macFas5.chrUn_AQIA01076778    23168 74 +     34961 atggatggatggatgggtatatgagtagatggatggatgatggatggatagatggatggatgat----ggatgagtta
i macFas5.chrUn_AQIA01076778   I 11 C 0
s macNem1.NW_012017243v1       427608 74 +  25972781 atggatggatggatgggtatatgagtagatggatggatgatgggtggatagatggatggatgat----gggtgagtta
i macNem1.NW_012017243v1       I 363 C 0
s cerAty1.NW_012001098v1       296073 74 -   1025902 atggatggatggatgggtatatgagtagatggatggatgatggatggatagatggatggatgat----ggatgagtta
i cerAty1.NW_012001098v1       I 367 C 0
s chlSab2.chrUn_KE147541v1     233821 74 -    811265 ttggatggatggatgggtatatgagtagatggatggatgatggatgaatagatggatgaatgaa----ggatgagtta
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       271120 77 -    350446 -tggatggatggatggctatatgagtagatggatggatgatagatggatagatggatggatggatgatggatgagtta
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       425945 74 +   1230721 atggatggatggatggctatatgagtagatggatggatgatggatgaatagatggatggatgaa----ggatgagtta
i colAng1.NW_012115411v1       T 3376 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M
e otoGar3.GL873584             266178 63716 +  11138919 I

a score=109374.000000
s hg38.chrX_KI270880v1_alt     249972  29 +    284869 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
s panTro5.chrX                 434557  29 + 155549662 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164199  29 -    177848 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       328829  25 +    417917 atgagtggatagatgga----------------------------------------------------------------------------------------------------------tg----ggtggg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24382  29 -     38397 atgggtggatagatgaa----------------------------------------------------------------------------------------------------------tggacagatggg
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    23242  29 +     34961 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       427682  29 +  25972781 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       296147  29 -   1025902 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     233895 135 -    811265 aggggtggatagatggatgggtgggtagatggatggatggatggctatatgagtagatggatggatgatagatggatagatggatggatggatgatggatgagttaatgggtggatagatggatggacagatggg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       271197  29 -    350446 atgggtggatagatgga----------------------------------------------------------------------------------------------------------tggacagatggg
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426019  29 +   1230721 aggggtggatagatgga----------------------------------------------------------------------------------------------------------tggatgggtggg
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             329894  29 +  11138919 atggatagatagatagg----------------------------------------------------------------------------------------------------------tgagtggagggg
i otoGar3.GL873584             I 63716 C 0
e canFam3.chrX                 374333 1835 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M

a score=793084.000000
s hg38.chrX_KI270880v1_alt     250001 182 +    284869 tggatgcatggatggatgggtggatggatgga----tgggtgggtaggtggatggatggataggtgg------------------------gtaggtgaatgagtggatggctgggtggataaatgagtggatggatgaatg---ggtggacagataagtggatgggtcgattagtaaatggatgtatggatggacgga--------tgtgtttgtg------------------------aatg--------
s panTro5.chrX                 434586 206 + 155549662 tggatgcatggatggatgggtggatggatggatgggtgggtgggtaggtggatggatggatgggtgggtaggtggatgggtggatgggtgagtaggtgaatgagtggatggctgggtggataaatgagtggatggatgaatg---ggtggacagataagtggatgagtcgattagtaaatgg----atggatgaatgga--------tgtgtttgtg------------------------aatg--------
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164228 202 -    177848 tggatgcatggatggatgggtggatggatgga----tgggtgggtaggtggatggatggatgggtgggtaggtggatgggtggatgggtgagtaggtgaatgagtggatggctgggtggataaatgagtggatggatgaatg---ggtggacagataagtggatgagtcgattagcaaatgg----atggatgaatgga--------tgtgtttgtg------------------------aatg--------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       328854 178 +    417917 tggatgcatgtatggatgggtggatggatgga----tgggtgggtaggtggatggatggataggtgg------------------------gtaggtgaatgagtggatggctgggtggataaatgagtggatggatgaatg---ggtggacagataagtggatgggtcgattagtaaatgg----atggatggatgga--------tgtgtttgtg------------------------aatg--------
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24411 153 -     38397 tggatgcatggatggatgggtggatggatgg-----tgggtgggtgg--------------------------------------------gtaggtgaatgagtggatggctgggtggacaaatgagtggatggatgaatg---ggtgtacagataagtggatgggtggattagta----g----atggagggatgga--------tgtgcttgtg------------------------aatg--------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    23271 153 +     34961 tggatgcatggatggatgggtggatggatgg-----ttggtgggtgg--------------------------------------------gtaggtgaatgagtggatggctgggtggacaaatgagtggatggatgaatg---ggtgtacagataagtggatgggtggattagta----g----atggagggatgga--------tgtgcttgtg------------------------aatg--------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       427711 153 +  25972781 tggatgcatggatggatgggtggatggatgg-----tgggtgggtgg--------------------------------------------gtaggtgaatgagtggatggctgggtggacaaatgagtggatggatgaatg---ggtgtacagataagtggatgggtggattagta----g----atggagggatgga--------tgtgcttgtg------------------------aatg--------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       296176 153 -   1025902 tggatgcatggatggatgggtggatggttgg-----tgggtgggtgg--------------------------------------------gtaggtgaatgagtggatggctgggtggataaatgagtggatggatgaatg---ggtgtacagataagtggatgattggattagta----g----atggagggatgga--------tgtgcttgtg------------------------aatg--------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     234030 177 -    811265 tggatgcatggatggatgggtggatggatgg-----tgggtgggtgg--------------------------------------------gtaggtgaatgagtggatggctgggtgcatgaatgagtggatggatgaatg---ggtgtacagataagtggatgggtggattagta----g----atggagggatgga--------tgtgtttgtgaatggaaagacggatgaatggataaatg--------
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       271226 153 -    350446 tggatgcatggatggatgagtggatggatgg-----tgggtgggtag--------------------------------------------gtaggtgaatgagtggatggctgagtggataaatgagtggatggataaatg---ggtgtacagataagtggatgagtggattagta----g----atggagggatgga--------tgtgcttgtg------------------------aatg--------
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426048 145 +   1230721 tggatggatggatggatggatggat-------------gatgggtgg--------------------------------------------gtaggtgaatgagtggatggctgagtgggtaaatgagtggatggacgaatg---gatgtacagataagtggatgggtggattagta----g----atggagggatgga--------tgtgtttgtg------------------------aatg--------
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             329923 173 +  11138919 tggatg-atggatggatggaaggatggatgga----tggatgggtgggtggatgaaagg--------------------------------gtagatggatggatggatggttggatggatagatggttgggtggatggatg---gaatggtggatatgtggataggtggatggatg----g----atggatgagtggacagaagggtgcctatatg------------------------gatg--------
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 376168 165 + 123869142 tgtatacatCTGtggataggtgggtggatgga----tatgtgggtga--------------------------------------------atagatgaatagacgggtggatggatggatggatggatggatggatggatggatgatggatggatggatggatgagtaggtggata----g----atagatggatgga--------tggatatatg------------------------gatggatggatg
i canFam3.chrX                 I 1835 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  64860 778 + 141252148 M

a score=1513878.000000
s hg38.chrX_KI270880v1_alt     250183 254 +    284869 gaaagatggatg-aatggataagtaggtgggtggatggttgtatgaatgaataggtggatgcataggtgaatggatgaatgaacaggtggatgggtatgtggatgAAC-GAGAGATAGATGAGTAGATAAGTC--------------CAGACATGATTTTTACTCTATGTGTTCCTGTTTACTTTGCCTTTGCCTCGTCGTCTTCCAAGACAATATATTGG-TTTGCAGATATTCAGGAAATTATTTT-AGAAATGTGCTTTGGGAACAACA
s panTro5.chrX                 434792 254 + 155549662 gaaagatggatg-aatggataagtaagtgggtggatggttgtatgaatgaataggtggatgcataggtgaatggatgaatgaacagctggatgggtatgtggatgAAC-GAGAGATAGATGAGTAGATAAGTC--------------CAGACATGATTTTTACTCTATGTGTTCCTGTTTACTTTGCCTTTGCCTCGTCGTCTTCCAAGACAATATATTGG-TTTGCAGATATTCAAGAAATTATTTT-AGAAATGGGCTTTGGGAACAACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164430 254 -    177848 gaaagatggatg-aatggataagtaagtgggtggatggttgtatgaatgaataggtggatgcataggtgaatggatgaatgaacagctggatgggtatgtggatgAAC-GAGAGATAGATGAGTAGATAAGTC--------------CAGACATGATTTTTACTCTATGTGTTCCTGTTTACTTTGCCTTTGCCTCGTCGTCTTCCAAGACAATATATTGG-TTTGCAGATATTCAAGAAATTATTTT-AGAAATGGGCTTTGGGAACAACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329032 255 +    417917 gaaaggtggatgaaatgcataagtaggtgggtggatggttgtatgaatgaataggtggatgcgtaggtgaatggatgaatgaacagctggatggctatgtggatgAAC-GAGAGATAGATGAGTAGATAAGTC--------------CAGACATGATTTTCACTCTATGTGTTCCTGTTTACTTTGCCTTTGCCTCATCGTCTTCCAAGACAATATATTTC-TTTGCAGATATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65641 265 + 141252148 GAAAGAT-GATG-AATG-ATAAGTAGGTGGGT-gatggttgtatgaatgaatagttggatggataggtggatggatgaatgaacagctggatggatatgtggatgaacggagagatagatgAGTAGATAATTCCAGACATTCTTTAACAGACATGATTTTTACTCTATGTGATCCTGTGTACTTCGCCTTTGCCTCGTCGTCTTCCAAGACAATATATTGG-TTTGCAGATATTCAAGAAATTATTTT-AGAAATGTCCTTTGGGAACAA-G
i nomLeu3.chrX                 M 778 C 0
s rheMac8.chrUn_NW_014831239v1  24564 268 -     38397 gaaagatggatg-aatggataagtaggtgggtggatggttgtatgaatgaatagatggacggataggtggatgtatgattgaatagctggatgggtgtgtggatgaaggaagggatagatgAGTAGATAAGTTCAGACATTCTTTAACAAAAATGATTTTTATTCTATGTGTTCCCGTTTACTCTGCCTTCGCCTCGTCATCTTCAAAGACAATATATTGG-TTTGCAGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAA-A
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    23424 268 +     34961 gaaagatggatg-aatggataagtaggtgggtggatggttgtatgaatgaatagatggacggataggtggatgtatgattgaatagctggatgggtgtgtggatgaatgaagggatagatgAGTAGATAAGTTCAGACATTCTTTAACAAAAATGATTTTTATTCTATGTGTTCCCGTTTACTCTGCCTTCGCCTCGTCATCTTCAAAGACAATATATTGG-TTTGCAGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAA-A
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       427864 268 +  25972781 gaaagatggatg-aatggataagtaggggggtggatggttgtatgaatgaatagatggacggataggtggatgtatgattgaatagctggatgggtgtgtggatgaatgaagggatagatgAGTAGATAAGTTCAGACATTCTTTAACAAAAATGATTTTTATTCTATGTGTTCCCGTTTACTCTGCCTTCGCCTCGTCATCTTCAAAGACAATATATTGG-TTTGCAGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAA-A
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       296329 270 -   1025902 gaaagatggatg-aatggataagtaggtgggtggatggttgtatgaatgaatagatggatggataggtggatgtatgattgaatagctggatgggtctgtggatgaacggagggatagatgAGTAGATAAGTCCAGACATTCTTTAACAAAAATGATTTTTATTCTATGTGTTCCCGTTTACTCTGCCTTCGCCTCGTCATCTTCAAAGACAATATATTGGTTTTTCTGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAACA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     234207 270 -    811265 gaaagatggatg-aatggataagtaggtgggtgggtggttgtatgaatgaatagatggacggataggtgggtgtatgaatgaatagctggatgggtctgtggatgaacggaaggatagatgAGTAGATAAGTCCAGACATTCTTTAACAAAAATGATTTTTACTCTGTGTGTTCCAGTTCACTCTGCCTTCGCCTCGTCATCTTCAAAGACAATATATTGGTTTTTCTGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAACA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       271379 270 -    350446 gaaagatagatg-aatggataagtaggtgggtggatggttgtatgaatgaataggtggacggataggtgggtgtgtgaatgaatagctggatgggtctgtggatgaacggagggatagatgAGTAGATAAGTCCAGACATTCTTTAACAAAAATGATTTTTATTCTATGTGTTCCCGTTTACTCTACCTTCGCCTCGTCGTCTTCAAAGACAATATATTGGTTTTTCTGACATTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426193 268 +   1230721 gaaagatggatg-aacggataagtagg-gggtggatggttgtatgaatgaatagatggacggataggtggatgtatgattgaatagctggatgggtctgtggatgaatggagggatagatgaatagatAAGTCCAGACATTCTTTAACAAAAATGATTTTTACTCTATGTGTTCCCGTTCACTCTGCCTTCACCTCGTCATCTTCAAAGACAATATATTGG-TTTGCAGATGTTCAAGAAATTATTTT-AGAAATGTGCTTTGGGAACAACG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             330096 247 +  11138919 ----gatggatg-gatgggtctatggagagatggatggattgatggttggatgggtggatggatggctaaatggatgggtagatggatggatgggtgagtggctgggt----ggctggatgtatagataaatggaGACATTCTTCAGTGA-----------ACTTTGTATACTCTTGTTGACTTC-TTTTTGTCTCATTGTCTTCAAAGACAATATATTGA-TCTTCAAATATTCAAGAAATTACTTTGAGGTGTCTGCTTGGTAAACC---
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 376333 219 + 123869142 ----gatggatg-gatggatggataggtgagtgggtggt----------------tggacacataggtggaagga------------------------tggatgagtggatggctagatgggtaaatACACACAAATATTCTCTCCCG----TGACTTTTACTCTACGTACTCTTATTTTCTCTTCACCTTCTTC-TTGTCTTCAAAGACAATATATTGA-TTTTCAAATACCCAAGAAATTACCTT-A-AGATGTTTCCTCGGAgggaca
i canFam3.chrX                 C 0 I 1624
e saiBol1.JH378345             267125 1208 +    465904 I

a score=49830.000000
s hg38.chrX_KI270880v1_alt     250437 8 +    284869 TAGACACA
s panTro5.chrX                 435046 8 + 155549662 TAGACACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164684 8 -    177848 TAGACACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329287 8 +    417917 TAGACACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65906 8 + 141252148 TAGACACA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24832 8 -     38397 TAGACACA
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macFas5.chrUn_AQIA01076778    23692 8 +     34961 TAGACACA
i macFas5.chrUn_AQIA01076778   C 0 I 1
s macNem1.NW_012017243v1       428132 8 +  25972781 TAGACACA
i macNem1.NW_012017243v1       C 0 I 1
s cerAty1.NW_012001098v1       296599 8 -   1025902 TAGACACA
i cerAty1.NW_012001098v1       C 0 I 4
s chlSab2.chrUn_KE147541v1     234477 8 -    811265 TAGACACA
i chlSab2.chrUn_KE147541v1     C 0 I 1
s manLeu1.NW_012108508v1       271649 8 -    350446 TAGACACA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426461 8 +   1230721 TAGACACA
i colAng1.NW_012115411v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             330343 0 +  11138919 C

a score=52675.000000
s hg38.chrX_KI270880v1_alt     250445 26 +    284869 CTCTGAATAAAGGCAGAGTCCTCCTA
s panTro5.chrX                 435054 26 + 155549662 CTCTGAATAAAGGCAGAGTCCTCCTA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164692 26 -    177848 CTCTGAACAAAGGCAGAGTCCTCCTA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329295 26 +    417917 CTCTGAATAAAGGCAGAGTCCTCCTA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65914 26 + 141252148 TTCTGAATAAAGGCAGAGTCCTCCTA
i nomLeu3.chrX                 C 0 C 0
s manLeu1.NW_012108508v1       271657 26 -    350446 TTCTGAATAAAGGCAGAGTCCTCCTG
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426469 26 +   1230721 TTCTGAATAAAGGCAGAGTCCTCCTG
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             330343 21 +  11138919 -----AGTAAAGCTACTGTCCTCATG
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     234485  1 -    811265 I
e cerAty1.NW_012001098v1       296607  4 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  24840  1 -     38397 I
e macNem1.NW_012017243v1       428140  1 +  25972781 I
e macFas5.chrUn_AQIA01076778    23700  1 +     34961 I

a score=7801.000000
s hg38.chrX_KI270880v1_alt     250471 5 +    284869 AAGAA
s panTro5.chrX                 435080 5 + 155549662 AAGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164718 5 -    177848 AAGAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329321 5 +    417917 AAGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1       271683 5 -    350446 AGGAA
i manLeu1.NW_012108508v1       C 0 C 0
s colAng1.NW_012115411v1       426495 5 +   1230721 AGGAA
i colAng1.NW_012115411v1       C 0 C 0
s otoGar3.GL873584             330364 5 +  11138919 GAGAA
i otoGar3.GL873584             C 0 I 3
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  65940 0 + 141252148 C
e chlSab2.chrUn_KE147541v1     234485 1 -    811265 I
e cerAty1.NW_012001098v1       296607 4 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  24840 1 -     38397 I
e macNem1.NW_012017243v1       428140 1 +  25972781 I
e macFas5.chrUn_AQIA01076778    23700 1 +     34961 I

a score=13534.000000
s hg38.chrX_KI270880v1_alt     250476 12 +    284869 GACTCATGTCtt
s panTro5.chrX                 435085 12 + 155549662 GACTCATGtctt
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164723 12 -    177848 GACTCATGtctt
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329326 12 +    417917 GACTCATGTCtt
i gorGor5.CYUI01015925v1       C 0 C 0
s manLeu1.NW_012108508v1       271688 12 -    350446 CActcatttctt
i manLeu1.NW_012108508v1       C 0 I 5054
s colAng1.NW_012115411v1       426500 12 +   1230721 CActcatttctt
i colAng1.NW_012115411v1       C 0 I 7495
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  65940  0 + 141252148 C
e otoGar3.GL873584             330369  3 +  11138919 I
e chlSab2.chrUn_KE147541v1     234485  1 -    811265 I
e cerAty1.NW_012001098v1       296607  4 -   1025902 I
e rheMac8.chrUn_NW_014831239v1  24840  1 -     38397 I
e macNem1.NW_012017243v1       428140  1 +  25972781 I
e macFas5.chrUn_AQIA01076778    23700  1 +     34961 I

a score=317543.000000
s hg38.chrX_KI270880v1_alt     250488 610 +    284869 tttttt-tattattatactttaagttttagggtacatgtgcacaacgtgcaggttcgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttaacattaggtatctctcctaatgctatccctcccccatccccacaccccacaacaggccctggtgtgtgatgttccccacgctgtgtccatgtgttctcattgttcatttcccacctatgagtgagaaaatgcggtgtttgg-tttttagtccttgtgatagtttgctgagaatgatggtttccagcttcatccatttccctacaaaggacataaaatcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtttatcattgttggacattcgggttggttccaagtctttgctattgtgaatagtgcctcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatactcctttgggtatatatccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccgcaatggttgaactagtttacagtccc
s panTro5.chrX                 435097 608 + 155549662 tttttt---ttaatatactttaacttttagggtacatgtgcacaacgtgcaggttcgttacatatgtatacatgtgccatgttggtgtgctgcacacattaactcatcatttaacattaggtatatctcctaatgctatccctccccgctccccccaccccacaacaggccccagtgtgtgatgttccccaccctgtgtccatgtgttctcattgttcatttcccacctgtgagtgagaacatgcggtgtttgg-tttttagtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttgatggctgcatagtattccatggtgtctatgtgccacattttctttatccagtctatcgttgctggatatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccgcaatggttgaactagtttacagtccc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 164735 606 -    177848 tttttt---ttattatactttaacttttagggtacatgtgcacaacgtgcaggttcgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttaacattaggtatatctcctaatgctatccctccccgctccccccaccccacaacaggccccagtgtgtgatgttccccaccctgtgtccatgtgttctcattgttcatttcccacctgtgagtgagaacatgcggtgtttgg-tttttagtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttgatggctgcatagtattccatggtgtctatgtgccacattttctttatccagtctatcgttgctggatatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtc--tatagcagcatgatttatactcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccgcaatggttgaactagtttacagtccc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329338 611 +    417917 tttttttttttattatactttaagttttagggtacatgtgcacaacgtgcaggttcgctacatatgtatacatgtgccatgttggtgtgctgaacccattaactcatcatttaacattaggtatatctcctaatgctatccctcccc-ctccccccaccccacaacaagccccagtgtgtgatgttccccatgctgtgtccatgtgttctcattgttcatttcacacctgtgagtgaaaacatgccgtgtttggttttttagtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatcatttttcatggctgcatagtattccatggtgtctatgtgccatattttctttatccagtctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtgccgcaatgaacatacgtgtgcatgtgtctttatagcagcatgatttatactcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttctgcaatggttgaactagtttacagtccc
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  65940   0 + 141252148 C
e otoGar3.GL873584             330369   3 +  11138919 I
e chlSab2.chrUn_KE147541v1     234485   1 -    811265 I
e cerAty1.NW_012001098v1       296607   4 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  24840   1 -     38397 I
e macNem1.NW_012017243v1       428140   1 +  25972781 I
e macFas5.chrUn_AQIA01076778    23700   1 +     34961 I

a score=6640.000000
s hg38.chrX_KI270880v1_alt     251098 7 +    284869 aGGAAGA
s panTro5.chrX                 435705 7 + 155549662 aGGAAGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 165341 7 -    177848 aGGAAGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329949 7 +    417917 aGGAAGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65940 7 + 141252148 AGGAAGA
i nomLeu3.chrX                 C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             330369 3 +  11138919 I
e chlSab2.chrUn_KE147541v1     234485 1 -    811265 I
e cerAty1.NW_012001098v1       296607 4 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  24840 1 -     38397 I
e macNem1.NW_012017243v1       428140 1 +  25972781 I
e macFas5.chrUn_AQIA01076778    23700 1 +     34961 I

a score=11997.000000
s hg38.chrX_KI270880v1_alt     251105 3 +    284869 ctc
s panTro5.chrX                 435712 3 + 155549662 ctc
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 165348 3 -    177848 ctc
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329956 3 +    417917 ctc
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65947 3 + 141252148 ctc
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24841 3 -     38397 ctc
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778    23701 3 +     34961 CTC
i macFas5.chrUn_AQIA01076778   I 1 C 0
s macNem1.NW_012017243v1       428141 3 +  25972781 ctc
i macNem1.NW_012017243v1       I 1 C 0
s chlSab2.chrUn_KE147541v1     234486 3 -    811265 ctc
i chlSab2.chrUn_KE147541v1     I 1 C 0
s otoGar3.GL873584             330372 3 +  11138919 CCC
i otoGar3.GL873584             I 3 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e cerAty1.NW_012001098v1       296607 4 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=2487375.000000
s hg38.chrX_KI270880v1_alt     251108 635 +    284869 atttcttatccactcccccgagataactgccattgtcactta-atacccttccagaacattttccacacatttagacacatttggacctgtt---gttgcatgtgtgtgacttgtgaaaacattcataga-gtcacgttgtattgttgcttgtagattccccaagttacttttctcactcaacaacctgtgttggagatattccccaccagcacacagaggtccactttct-cattttatctgttcgatgtgatccacagtatggatccatcaagtcccccgttg-ggcgaacaattagagtctgcccgtttttctgctatcagagtcattgctgcaacaagca--tgcttccccatgctacgtcgtgcctgagtatgagagtttctccagggtagacac-ttagaagtgggattgcctggtcagaagaaaacctgcacttaattgtcgtggacagcactgactttccctccaatctgtggttccaatttccca-tcccacataaggagataattgccttacatcctgcaaccacttgccacgatcacactttgcaatgtttttgctattataagcaattgagcaatgacacgctctttt-----------ctttttaacttgtaAAAATTTATTATAGAAAGGAAAAGGCAGAGAA
s panTro5.chrX                 435715 635 + 155549662 atttcttatccactcccccgagataactgccattgtcactta-atacccttccagaacattttccacacatttagacacatttggacctgtt---gttgcatgtgtgtgacttgtgaaaacattcatagt-gtcacgttgtattgttgcttgtagataccccgagttgcttttctcactcaacaacctgtgttggagatattccccagcagcacacagaggcccactttctgcattttatctgttcgatgtgatccacagtatggatccatcaagtcccccgttg-ggcgaacaattagagtctgcccgtttttctgctatc--agtcattgctgcaacaagca--tgcttccccatgctacgtcgtgcctcagtatgagagtttctccagggtagacactttagaagtgggattgcctggtcagaagaaaacgtgcacttaattgtcgtggacagcactgactttccctccaatctgtggttccaatttccca-tcccacataaggagataattgccttacatcctgcagccacttgcgacgatcacactttgcaatgtttttgctattataggcaattgagcaatgacacgctctttt-----------ctttttaacttgtaAAAATTTATTATAGAAAGGAAAAGGCAGAGAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 165351 635 -    177848 atttcttatccactcccccgagataactgccattgtcactta-atacccttccagaacattttccacacatttagacacatttggacctgtt---gttgcatgtgtgtgacttgtgaaaacattcatagt-gtcacgttgtattgttgcttgtagataccccgagttgcttttctcactcaacaacctgtgttggagatattccccagcagcacacagaggcccactttctgcattttatctgttcgatgtgatccacagtatggatccatcaagtcccccgttg-ggcgaacaattagagtctgcccgtttttctgctatc--agtcattgctgcaacaagca--tgcttccccatgctacatcgtgcctgagtatgagagtttctccagggtagacactttagaagtgggattgcctggtcagaagaaaacgtgcacttaattgtcgtggacagcactgactttccctccaatctgtggttccaatttccca-tcccacataaggagataattgccttacatcctgcagccacttgcgacgatcacactttgcaatgtttttgctattataggcaattgagcaatgacacgctctttt-----------ctttttaacttgtaAAAATTTATTATAGAAAGGAAAACGCAGAGAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       329959 636 +    417917 atttcttatccactcccccgagataactgccattgtcactta-atacccttccagaacattttccacacatttagacacatttggacctgtt---gttgcatgtgtgtgacttgtgaaaacattcggagt-gtcacgttgtattgtcgcttgtagattccccaagttgcttttctcactcaacaacctgtgttggagatattccccaccagcacacagaggctcactttctgcattttatctgttcgatgtgatccacagtatggatccatcaagtcccccgttg-ggcgaacaattagagtctgcccttttttctgctatcaaagtcattgctgcaacaagca--tgcttccccatgctatgtcgtgcctgagtatgagagtttctccagggtagacac-ttagaagtgggattgcctggtcagaagaaaacgtgcacttaattgtcgtggacagcactgactttccctccaatctgtggttccaatttccca-tcccacatgaggagataattgccttacatcctgcaaccacttgccacgatcacactttgcaatgtttttgctattataggcaattgagcaatgagacgctctttt-----------ctttttaacttgtaAAAATTTATTATAGAAAGGAAAAGGCAGAGAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  65950 631 + 141252148 atttcttatccactaccccgagataactgccattgtcactta-atgtccttccagaacattttccgcacatttagacacatttggacctgtt---gttgcatgtgtgtgacttgtgcaaacattcacagt-gtcacattttattgttgcttgtagattccccaagttgcttttctcactcaacgacctgtgctggagatattccctagcaacacacagaggctcactctctgcgttttatctctttaaagtgatccacagtatggatccatcaagtcccccgttg-ggcaaac------agtctgcccttttctctgctatcacagtcattgctgcaacaagct--tgcttcctcatgctatgtcgtgcctgagtatgagagtttctccagggtagatac-ttagaagtgggattgcctggtcagaagaaaacgtgcatttaattgtcgtggacagcactgactttccctccaatctgtggttccaatttcccactcccacataaggagataattgccttacatcctgcaaccacttgccacgatcacactttgcaatgtttttgctaTTATAGGCAATTGCACAATGACACGCTCTTTT-----------CTTTTGAACTTGTAAAAATTTATTATAGAGAGGAAAAGGCAGAGAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  24844 639 -     38397 atttcttatccactccccagagataactgccgtggtcacttc-atgtccttccagaacattttccgcacgtttagacacatttggacctgtt---gttgcacctgtgtgacttgtgaaaacattcctagtggtcccatcgtactgtagtatggagattcttcaagttgcttttgtcactcagcaatctgtgttggagatatgccctagccacacacagaggctcactttctgcattttatctgttcaatgttatccacaggatggatccctcaggttccccattg-ggcgaacaattaaactctacccgtttctctgctatcacagcctttgctgcaacaagca-tttcttcctcatactatgtcgtgcctgagtatgacagtttctccagcgtagatac-ttagaagtgggattgcctggtcagaagaaaacgtgcatttaattgtcatggacagcactgactttccctccaatctgtggctccaatttcccgctcccacatgaggagataattgcctgacatcctgcaaccacttgccacgatcacactttgcaatgttttcactgttataggcaattgtgcaatcatgtgctctttt-----------cgtttgaacttgtaAAAATTTATTATAGAGAGCAAAAGGCAGAGAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    23704 638 +     34961 ATTTCTTATCCACTCCCCAGAGATAACTGCCGTGGTCACTTC-ATGTCCTTCCAGAACATTTTCCTCACGTTTAGACACATTTGGACCTGTT---GTTGCACCTGTGTGACTTGTGAAACCATTCCTAGT-GTCCCatcgtactgtagtatggagattcttcaagttgcttttgtcactcagcaatctgtgttggagatatgccctagccacacacagaggctcactttctgcattttatctgttcaatgttatccacaggatggatccctcaggttccccattg-ggcgaacaattaaactctacccgtttctctgctatcacagcctttgctgcaacaagca-tttcttcctcatactatgtcgtgcctgagtatgacagtttctccagcgtagatac-ttagaagtgggattgcctggtcagaagaaaacgtgcatttaattgtcatggacagcactgactttccctccaatctgtggctccaatttcccgctcccacatgaggagataattgcctgacatcctgcaaccacttgccacgatcacactttgcaatgttttcactgttataggcaattgtgcaatcatgtgctctttt-----------cgtttgaacttgtaAAAATTTATTATAGAGAGCAAAAGGCAGAGAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       428144 639 +  25972781 atttcttatccactccccagagataactgccgtggtcactta-atgtccttccagaacattttccgcacgtttagacacatttggacctgtt---gttgcacctgtgtgacttgtgaaaacattcctagtggtcccatcgtactgtagtatggagattcttcaagttgcttttgtcactcagcaatctgtgttggagatatgccctagccacacacagaggctcactttctgcattttatctgttcaatgttatccacaggatggatccctcaggttccccattg-ggcgaacaattaaactctacccgtttctctgctatcacagcctttgctgcaacaagca-tttcttcctcatactatgtcgtgcctgagtatgacagtttctccagcgtagatac-ttagaagtgggattgcctggtcagaagaaaacgtgcatttaattgtcatggacagcactgactttccctccaatctgtggctccaatttcccgctcccacatgaggagataattgcctgacatcctgcaaccacttgccacgatcacactttgcaatgttttcactgttataggcaattgtgcaatcatgtgctctttt-----------cgtttgaacttgtaAAAATTTATTATAGAGAGCAAAAGGCAGAGAA
i macNem1.NW_012017243v1       C 0 I 2044
s cerAty1.NW_012001098v1       296611 638 -   1025902 ATTTCTTAtccactccccagagataactgccgtggtcactta-atgtccttccagaacattttccgcacatttagacacatttggacctgtt---gttgcacctgtgtgacttgtgaaaacattcatagc-gtcccatcgtactgtagtatggagattcttcaagttgcttttgtcactcagcagcctgtgttggagatatgccctagccacacacagaggctcactttctgcattttatctgttcaatgttatccacaggatggatccctcaggttccccattg-ggcgaacaattaaactctacccgtttctctgctgtcacagcctttgctgcaacaagca-attcttcctcatactatgtcgtgcctgagtatgacagtttctccagggtagatac-ttagaagtgggattgcctggtcagaagaaaacgtgcatttaattgtcatggacagcactggctttccctccaatctgtggctccaatttcccgctcccacatgaggagataattgcctgacatcctgcaaccacttgccacgatcacactttgcaatgttttcactgttacaggcaattgtgcaatgatgtgctccttt-----------cgtttgaacttgtaAAAATTTATTATAGAGAGCAAAAGGCAGAGAA
i cerAty1.NW_012001098v1       I 4 C 0
s chlSab2.chrUn_KE147541v1     234489 639 -    811265 atttcttatccactccccagagataactgccgtggtcactta-atgtccttccagaacattttctgcacgtttagacacatttggacctgtt---gttgcacctgtgtggcttgtgaaaacatttatggt-gtcccattgtactgttgtgtggagattcttcaagttgcttttgtcactcagcaacctgtgttggagatacgccctagccactcacagaggctcactttctgcattttatctgttcgatgtcatccacaggatggatccctcaggttccccattg-ggcgaacaattaaactctccccgtttctctgctatcacagcctttgctgcaacaagcattttcttcctcatactatgtcgtgcctgagtatgacagtttctccagggtagatac-ttagaagtcggattgcctggtcagaagaaaacgtgcatttaattgtcatggacagcgctgactttccctccaatctggggctccaatttcccgctcccacatgaggagataattgcctgacatcctgcaaccacttgccacgatcacactttgcaatgttttcactgttacaggcaattgtgcaatcatgtgctctttt-----------cgtctgaacttgtaAGAATTTATTATAGAGAGCAAAAGGCAGAGAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s otoGar3.GL873584             330375 588 +  11138919 ACTCTTTGTGCATTCCCAAGACATAAGTGCCACTGTCATCTAGGGGTCCTTCCAGAACCTTTTCTGCACATTCAGATGCCTTTGAAGCTGTTGTGGTTGCGTGTGTGTGATTCATTAGCACCCACACGGT-CTCTCCTTGTAGGGGAGCATGTAAACTTCTACAGTGGCTTTTCT-----------CTGTCTTGGAGAGGTTTCC-AGAAACACACACAGCCTCAGCTCCTGCATTTTACCTGCTGAG---AATTCTCAGGATGGCTGCACCTGGGCTCCTGTTTCAGTGAACAATTAGGTTCTGCTTActcct--------------------------------tgctt--------------gtgccag----tgataattcctccaagatggacag-ctagaagtggaactccttggttggaaggaaatgtgcatctaattgtaatagacaG-AGTGGATGCCCTTCCAATGCATGGTTACAATTTCCTATTCCCATGTGAGAAGATAGTTGCTGGACAGCCAGCAACCATTGGCTGTG-TCGCACTTTATAAGGTTATGGCTGTCACAGGCACTACTGTGCTGACATATTCCTTTTCTCCTTTTTCTTTTTTAATATGTAAAAATTCATTACAGAGAGCAGAGGGCAAAGAA
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=635600.000000
s hg38.chrX_KI270880v1_alt     251743 201 +    284869 CAGCCATAGAAAGGACAAATAATGGCATGTGTTACTAGTCATTCCTGTTAGGAAATTAACAGGGGAAACAGTGTAGGAAATGCTACTTGTGATGATAGTACTGCAATGTATTGAATACTTACCATGTGCAATGAGACAGTCTTGTCTCTGCT-GCCTCATAAGACTCTCTCAGCTGCCTGCACTCCCTATAGTGCTGCTAAC
s panTro5.chrX                 436350 201 + 155549662 CAGCCATAAAAAGGACAAATAATGGCATGTGTTACTAGTCATTCCTGTAAGGAAATTAACAGGGGAAACAGTGTAGGAAATGCTACTTGTGATGATAATACTGCAATGTATTGAATACTTACCATGCGCAATGAGACAGTCTTGTCTCTGCT-GCCTCGTAAGACTCTCCCAGCTGCCTGCACTCCCTATAGTGCTGCTAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 165986 201 -    177848 CAGCCATAAAAAGGACAAATAATGGCATGTGTTACTAGTCATTCCTGTAAGGAAATTAACAGGGGAAACAGTGTAGGAAATGCTACTTGTGATGATAATACTGCAATGTATTGAATACTTACCATGCGCAATGAGACAGTCTTCTCTCTGCT-GCCTCGTAAGACTCTCCCAGCTGCCTGCACTCCCTATAGTGCTGCTAAC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       330595 201 +    417917 CAGCCATAAAAAGGACAAATAATGGCATGTGTTACTAGTCATTCCTGTAAGGAAATTAACAGGAGAAACAGCGTAGGAAATGCTACTTGTGATGATAATACTGCAATGTATTGAATACTTGCCATGCGCAGTGAGACAGTCTTCTCTCTGCT-GCCTCATAAGACTCTCCCAGCTGCCTGCACTCCCTATAGTGCCGCTAAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66581 201 + 141252148 CCACCATGAAAAGGACAAATAATGGCACGTGTTACTAGTCATTCCTGTAAGGAAATTAACAGGAGAAACAGTGTAGGAAATGCTACTTGTGATGATAATACTGCAATGTATTGAATACTTACCATGTGCAATGAGACAGTCTTGTTTCTACT-GCCTTGTAAGACTATCCCAGCTGCCTGCACTCCCTATAGTGTTGCTAGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  25483 201 -     38397 CTGTCATAAAAAGGACAAATAATGGTGTGTGTTACTAGTCATTCCTGTAAGGAAATGAACAGGGGAACCAGTGTAGGAAATGCTACTTGTGATGATGATATTGCAATGTATTGAATACTTACCATGTGCAGTGACACAGTCTTATCTCTACT-GCCTTGTAAGACTCCCCCAGCCGCCTGGGCTCCCCATAGCGTTGCTCAC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    24342 201 +     34961 CTGTCATAAAAAGGACAAATAATGGTGTGTGTTACTAGTCATTCCTGTAAGGAAATGAACAGGGGAACCAGTGTAGGAAATGCTACTTGTGATGATGATATTGCAATGTATTGAATACTTACCATGTGCAGTGACACAGTCTTATCTCTACT-GCCTTGTAAGACTCCCCCAGCCGCCTGGGCTCCCCATAGCGTTGCTCAC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       297249 201 -   1025902 GTGCCATAAAAAGGACAAATAATGGTGTGTGTTACTAGTCATTCCTGTAAGGAAATGAACAGGGGAAACGGTGTAGGAAATGCTACTTGTGATGATGATATTGCAATGTATTGAATCCTTACCATATGCAGTGACACAGTCTTATCTCTACT-GCCTCGTAAGGCTCTCCCAGCCGCCTGCGCTCCCCATAGCGTTGCTCAC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     235128 201 -    811265 CCGTCATAAAAAGGACAAAGAATGGTGTGTGTTACTAGTCATTCCTGTAAGGAAATGAACAGGGGAAACAGTGTAGGAAATGCTACTTGTGATGATGATCTTGCAATGTATTGAATCCTTACCATGTGCAGTGACACAGTCTTATCTCTACT-GCCTTGTAAGGCTCTCCCAGCCGCCTGCACTCCCTATAGTGTTGCTAAC
i chlSab2.chrUn_KE147541v1     C 0 I 1379
s otoGar3.GL873584             330963 183 +  11138919 --AAATAAAAAAGGACAAATAGTAGGAT-TGTTGCTACTAATTCCTGTAAGAAAATGTACTTG-GAAAGAGGGT-GGCAGTGCTGCTTGTGACAGTAAGGTGACAATGTATAGAATACTTACCATATA------------CTCCTCTCTGCCAGTTTAGGAAACCTCCCCCA--TGCCCCTGCCATCTATAAGGTTGCTGAG
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I

a score=16458.000000
s hg38.chrX_KI270880v1_alt     251944 10 +    284869 ATTGTG-TTTT
s panTro5.chrX                 436551 10 + 155549662 ATTGTG-TTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 166187 10 -    177848 ATTGTG-CTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       330796 10 +    417917 ATTGTG-TTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66782 10 + 141252148 ATGGTG-TTTT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  25684 11 -     38397 ATGGTGCTTTT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    24543 11 +     34961 ATGGTGCTTTT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       297450 11 -   1025902 ATGGTGCTTTT
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             331146 10 +  11138919 Attctt-ttct
i otoGar3.GL873584             C 0 I 15
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I

a score=50663.000000
s hg38.chrX_KI270880v1_alt     251954 24 +    284869 ACACAGCCatatacagatat-aaaa
s panTro5.chrX                 436561 24 + 155549662 ACACAGCCATATAAAGATAT-AAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 166197 25 -    177848 ACACAGCCatacacagatataaaaa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       330806 24 +    417917 ACACAGCCatatacagatat-aaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66792 24 + 141252148 ACACAGCCatatatagatat-aaaa
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  25695 24 -     38397 ACACAGTCatatatatatat-aaaa
i rheMac8.chrUn_NW_014831239v1 C 0 I 1427
s macFas5.chrUn_AQIA01076778    24554 24 +     34961 ACACAGTCatatatatatat-aaaa
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       297461 24 -   1025902 ACACAGTCatatatatatat-aaaa
i cerAty1.NW_012001098v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156 15 +  11138919 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I

a score=42199.000000
s hg38.chrX_KI270880v1_alt     251978 31 +    284869 aatatataatatata--ttttatagataatata
s panTro5.chrX                 436585 31 + 155549662 AATATATAATATGTA--TTTTATGGATAATATA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 166222 29 -    177848 aatatataatatgta----ttatagataatata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       330830 31 +    417917 aatatataatatata--ttttacagataatata
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66816 31 + 141252148 aatataaaatatata--ttttatagataatata
i nomLeu3.chrX                 C 0 I 4
s macFas5.chrUn_AQIA01076778    24578 31 +     34961 --tataaaatatatatatttcacagataatata
i macFas5.chrUn_AQIA01076778   C 0 I 2
s cerAty1.NW_012001098v1       297485 31 -   1025902 --tataaaatatatatatttcacagataatata
i cerAty1.NW_012001098v1       C 0 I 3156
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156 15 +  11138919 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I

a score=86170.000000
s hg38.chrX_KI270880v1_alt     252009 147 +    284869 attatatataactatataaaattacataatatataataaattatatattatagataatatataataattataaa---tatagataatatataataattataaatattatagataatatataataattacatattatagataatatacaat
s panTro5.chrX                 436616 145 + 155549662 ATTATATATAACGATATATAATTACATAATATATAATTAATTACATATTATAGATAATATATAATAATTATAAA---TATTACAGATATATAATAATTAC--ATATTATAGATAATATATAATAATTACATATTATAGATAATATATAAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 166251 145 -    177848 attatatataactatatataattacataatacatgattaattatatattatagataatatataataattataaa---tatagataatatataataattac--atattatagataatatatactaattatatattatagacaatatataat
i panPan2.chrUn_NW_014024190v1 C 0 I 3069
s gorGor5.CYUI01015925v1       330861 148 +    417917 attatatataactatatataattacataatatataattaattatatattataaataatatgtactaattataaatattatagataatatataataattac--atattatagataatatataataattacatattacagataatatataat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66851 118 + 141252148 atcatatat-tttatagataat------atatatgatca--tatattttatagataatatata-tgattata-----tattacaactatataa-aattcc--ataatata------------taattatatattatagataatatata--
i nomLeu3.chrX                 I 4 C 0
s macFas5.chrUn_AQIA01076778    24611 118 +     34961 attacatgt-agtatctacattt--------tataattatctacaatatatgattacaatacaata--tataag---tatctacaatatat---aattac--atgtagta-----tctata-tatttacatatgttatataat-------
i macFas5.chrUn_AQIA01076778   I 2 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156  15 +  11138919 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I

a score=28165.000000
s hg38.chrX_KI270880v1_alt     252156 71 +    284869 aattacatattatagctaatatataataattacatattatagataatatacaataattacatattatagct
s panTro5.chrX                 436761 71 + 155549662 AATTACATATTATAGATAATATATAATAATTACATATTATAGATAATATATAATAATTACATATTATAGAT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       331009 71 +    417917 aattacatattatagataatagataataattacatattatagataatatataataattacatattatagat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  66969 57 + 141252148 --------attatagataatatat-ataatataatattatagatggtatat-ataat----tattatagat
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    24729 56 +     34961 --------------attgacatatgat-ataatatatgatatataatataatattataatatgttatatga
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156 15 +  11138919 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=3962.000000
s hg38.chrX_KI270880v1_alt     252227 10 +    284869 aatatataat
s panTro5.chrX                 436832 10 + 155549662 AATATATAAT
i panTro5.chrX                 C 0 I 2807
s nomLeu3.chrX                  67026 10 + 141252148 aatatattaa
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    24785 10 +     34961 aatatattat
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156 15 +  11138919 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e gorGor5.CYUI01015925v1       331080  0 +    417917 C
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=9425.000000
s hg38.chrX_KI270880v1_alt     252237 196 +    284869 --aat-tacatattatagataatatgtaataattataaatatta----------tagataatatataattacatattatagataatatataata---attataaatattatagataatat-ata-ataattacatattatagataatatacaata-attacatattatagataatatataataattacatattatagataatatataataattat
s nomLeu3.chrX                  67036 171 + 141252148 --aat-tatatattttatatattat------attttatatatta----------tataaaatatataattatctataat--ataatatatact--------tatatattat--ataatataatatatatttatata-aatatatagtatacaatataatatgtattatatcaaatataatatattt------------taacatataaaaataat
i nomLeu3.chrX                 C 0 M 2457
s macFas5.chrUn_AQIA01076778    24795 196 +     34961 ataataggtatattatatattgtat------agtatatatatcaatattatagctatattatatattaatagatatcatagattatagattatatacattatatacagtatagatcatag-ata-a----tacacattgaagattatatacattatattatagattatatacattatacaatgcat----ataatgtataatatgtaattat---
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             331156  15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e gorGor5.CYUI01015925v1       331080   0 +    417917 C
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=9735.000000
s hg38.chrX_KI270880v1_alt     252433 369 +    284869 aaatattatagataatatataataattacatattatagataatatata-ataattatattatagataatatataat---aattacatattatagataatatataataattatattatagataatatatgata---attatatat----tatagataata-----tatgaaaata----attatatattatagataatatatgata---attatatattatagataatatatgataattatatattatagataatatatgata-----attatatattatagataatatataattacatacaatatatattttatataaaatatataattacatatattttatata-aatatataattacatatattttatataatatataattacatatattatataa
s macFas5.chrUn_AQIA01076778    24991 375 +     34961 atataatatag----catataatg--tatatgatgtatatgatgtatatataataatattat--atattatataattgatataatatcatatacataatatataatgtatataatgtatattacatataatacacattatatgcattatatacataatatgcattatgtacatacattaatgtatattacataacatacattatacacattatgtaatatacattatacac----attatataatatacataatatacattatgtatgctatataatatagattatata-gatcatatacattgtatattatgtatattaaatataatagattatggattatatacattatata-----atatatcatatataat-----gttatatatgttatatat
i macFas5.chrUn_AQIA01076778   C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331156  15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e gorGor5.CYUI01015925v1       331080   0 +    417917 C
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=44002.000000
s hg38.chrX_KI270880v1_alt     252802 392 +    284869 ---aatatataattacatataatatatcttttatataaaatatatattatatataacatataattataatatattatataactatatc-ttttataatataaaatattatat--ataatatataatatataatta-tatattatacatgcttataaaatataatatatagtatattatgttatcaaatatataatatattatatgatatataatata-----------------------------------atatataattata--tattata-tatgcttacaaaatatattataaaatataatatatagcatattttatattatcaaatatat--tatataatatataatatcatatattatcatctatatcatatatatcaattacatat---atcata-----tataaaatataatatataa-------tatctattgtataatataat
s gorGor5.CYUI01015925v1       331080 432 +    417917 ---aatatataattacatataatacatcttttatataaaatacatattatatataacatataattataatatattatataaatatatc-ttttataatataaaatatgatat--ataatata--atatataatta-tatattatatatgcttataaaatataatatataatatat---attatcaaatatataatatattatataatatataatatatattatcaaatatataatatattatataatatattatatataattata--tattata-tatgcttacaaaatatattataaaatataatatatagtatataatatattatcaaatatatattatataatatataatatcatatattatcatctatatcatatat--caattacatattatatcata-----tataaaatataatatataacatataatatctattgtataatataat
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    25366 335 +     34961 aatgttatat-attatatatgatatat------tatataatgtatataatctataatctataataat-atataatatattattatattatgttataat-tatattattatataaatcatatataatatataaatattatataatatat---------aaacaatatataa-atat------------tatataatata-taaatgatatataa---------------------------------------atatataaatgtaattattttattatgtt-----attatattata----ataatatataatatattatatatt-------------tatattatagat-ctattatatatta-----tagataatatat---aattataca----attatagactgtgtataattacatatataa-------------ttatatattataat
i macFas5.chrUn_AQIA01076778   C 0 I 88
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331156  15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=1982.000000
s hg38.chrX_KI270880v1_alt     253194 58 +    284869 atatgatataatgtattatatcatgtataatatatcatgtataatatattatattata
s gorGor5.CYUI01015925v1       331512 45 +    417917 atataatata---tattatatcatgtataat-------gtaatatatattatat---a
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331156 15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e macFas5.chrUn_AQIA01076778    25701 88 +     34961 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=11120.000000
s hg38.chrX_KI270880v1_alt     253252 134 +    284869 tcatgtata-atataatatatcatgtaataatataatatat---tatatcatgtataatata-----atatattatatcatgtataatataatacacattatatattatatcatgtataatataatacacattatatattata
s gorGor5.CYUI01015925v1       331557  99 +    417917 tcatgtata-atgtaatatat-----------attatatat---tatatcatgtataatgta-----atatat------------------------ataatatattatatcatgtataatgtaatatatattatatattata
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    25789 139 +     34961 Ccatatatacataaaatataaaatataagaatataaaatgtatacattttatagataatatataattatatat---actgtatatatgtttgtatatactatatactatataatatatataataatat-tataatacactata
i macFas5.chrUn_AQIA01076778   I 88 I 46
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331156  15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=26662.000000
s hg38.chrX_KI270880v1_alt     253386 611 +    284869 tcatgtattatataatacacattatatattatatcatgtattatataatacacattatatattatatcatgtattatataatatatagtatattgtatcgtgtattatataatatatagtatattgtatcgtgtattatataatatatagtatat--tgtatcgtgtattatataatatatagtatat--tgtatcgtgtattatataatatatagtatat--tgtatcgtgtattatataatacatagtatat--tgtatcgtgtattatataatacatagtatattatatcgtgtattatataatatatagtatat--tatatcgtgtattatataatatatagtatattatatcgtgtattatataatatatagtatattat--atcgtgtattatataatatatagtatattatatcgtgtattatataatatatagtatattatatcgtgtattatataatatatagtatattatatcgtgtattatataatatatagtatattatatcgtgtattatataatatatgatataatatataattatataaaaatatataattatatattatatataaaacgatgtatacataaaatatatatatacacac-tatataTAt
s gorGor5.CYUI01015925v1       331656 549 +    417917 tcgtgtataatgtaatatataatatatattatatcgtgtataatgtaatatataatatatattatatcatgtataatgtaatatataatatat----------attatatcatgtataac------------gtaatatataatatatattatatcatgtataacgtaatatgtaatatacactatatcatgtataacgtaatatataatatacactatatcatgtataacgtaatatataatatatactctatcatgtacaacgtaatatataata-----tatattatatcatgtataatgtaatatataatatatattatatcatgtataaggtaatatata-----ttatatcatgtataaggtaatatatattatatcatgtataaggtaatatataatataatatatattatatcatgtataatgtaatatataatatat----------attatatcat-----gtatattatac-----atgatataatatatattacagtatat----------------------atagtatata-ttatataaaaatatataattatttattatatataaaactatgtatacacaaaatatatatatacacacatgtatatat
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331156  15 +  11138919 I
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e macFas5.chrUn_AQIA01076778    25928  46 +     34961 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=39448.000000
s hg38.chrX_KI270880v1_alt     253997 328 +    284869 tttttgaga------tggaggcttgctcccatcacagaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattactggcatgcaccaccacgcccggctaatttttgtatttttagtagagatggggtttctccatgttgttcaggctggtctcaaactcccgacctcaggtcatccacccgccttggcctcccaaagt-gctgggattacaggcttgagccactgtgcctggctgttttttttctgttttgttttgttttgttttgtttgtttg
s gorGor5.CYUI01015925v1       332205 323 +    417917 tttttgaga------tggagtcgtgctcccatcacagaggctggagtgcagtggtgcgatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattactggcatgcaccaccacgcccggctaatttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtcatccacccgccttggcctcccaaagt-gctgggattacaggc--acgccactgtgcccggcTGTTTTTTTTTT-TTCTGttttgtttt--tttgtttgtttg
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             331171 254 +  11138919 tttttgagagacaggcagggtcttgctctggt-gcccaggctggagttcagtggcatcatcatagctccttg--------------------------------------cagcctccctagtagctgggcctgcaggtgc-caacaccatgcccagatagttttct--------gtagagatggggtctcactatgttgcccagcctggcctcaaactcctgggctcaagtgatccttctgcctttaccctcctgagtagctgggattatagac----TTTGCCATGCCCTCCTAAGAttttgta-----------------------------
i otoGar3.GL873584             I 15 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e macFas5.chrUn_AQIA01076778    25928  46 +     34961 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=6587.000000
s hg38.chrX_KI270880v1_alt     254325 30 +    284869 ttt---tttgagacagagtctcactctgttgcc
s gorGor5.CYUI01015925v1       332528 33 +    417917 tttgtttttgagacagagtctcactctgttgcc
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    25974 25 +     34961 ttt---tttgagatggagtct-----tgctgcc
i macFas5.chrUn_AQIA01076778   I 46 I 6
s otoGar3.GL873584             331425 24 +  11138919 ---------gaaatagggtcttgctatattgcc
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  25719 1427 -     38397 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=9141.000000
s hg38.chrX_KI270880v1_alt     254355 25 +    284869 gaggctggagtgcagtggcactgtg
s gorGor5.CYUI01015925v1       332561 25 +    417917 aaggctggagtgcagtggcactgtg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27146 25 -     38397 gaggctggagtgcaggggcacgatc
i rheMac8.chrUn_NW_014831239v1 I 1427 C 0
s macFas5.chrUn_AQIA01076778    26005 25 +     34961 gaggctggagtgcaggggcacgatc
i macFas5.chrUn_AQIA01076778   I 6 C 0
s otoGar3.GL873584             331449  8 +  11138919 cagactgg-----------------
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e panTro5.chrX                 436842 2807 + 155549662 I
e chlSab2.chrUn_KE147541v1     235329 1379 -    811265 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=17956.000000
s hg38.chrX_KI270880v1_alt     254380 22 +    284869 tcagctcactgcaacctccata
s gorGor5.CYUI01015925v1       332586 22 +    417917 tcagctcactgcaacctccatc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27171 22 -     38397 tcagctcactgcaacctccacc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26030 22 +     34961 tcagctcactgcaacctctacc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     236708 22 -    811265 tcagcccactgcaacctccacc
i chlSab2.chrUn_KE147541v1     I 1379 C 0
s otoGar3.GL873584             331457  8 +  11138919 --------------cctcaaac
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       271700 5054 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e panTro5.chrX                 436842 2807 + 155549662 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=146754.000000
s hg38.chrX_KI270880v1_alt     254402 101 +    284869 tcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggatgacaggcgtccaccaccacgcccggctagtttttatatttttagtagagacc
s gorGor5.CYUI01015925v1       332608 101 +    417917 tcctgggttcaagcaattctcctgcctcagcctcccgagtagctggaatgacaggcgtccaccaccacgcccggctagtttttatatttttagtagagacc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27193 101 -     38397 tcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccaccaccacgcctggctagtttttatatttttagtagagacg
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26052 101 +     34961 tcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccaccaccacgcctggctagtttttatatttttagtagagacg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     236730 101 -    811265 tcgcgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcgtaccaccacacctggctagtttttatatttttagtagagacg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       276754 101 -    350446 tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatccaccaccacgcctggctagtttttatatttttagtagagacg
i manLeu1.NW_012108508v1       I 5054 C 0
s otoGar3.GL873584             331465  83 +  11138919 tcctgcgatcaagtgatccttctgccttaccctcct------ctgggattataggct----ctgccatgccccgctaagttgttt--------tagaaatg
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e panTro5.chrX                 436842 2807 + 155549662 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=226689.000000
s hg38.chrX_KI270880v1_alt     254503 110 +    284869 gggtttcactatgttggccaggctggtctt--gaactcctgacctcaagtgatccacctttcttggcctcccaaagtgctgggatgacaggcatgagccactgtgcccggcc
s panTro5.chrX                 439649 110 + 155549662 gggtttcaccatgttggccaggctggtcct--gaactcctgacctcaagtgatccacctaccttggcctcccaaagtgctgggatgacaggcatgagccactgcgcccggcT
i panTro5.chrX                 I 2807 C 0
s gorGor5.CYUI01015925v1       332709 110 +    417917 gggtttcaccatgttggccaggctggtctt--gaactcctgacctcaggtgatccacctaccttggcctcccaaagtgctgggatgacaggcatgagccactgcgcccggcc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27294 110 -     38397 gtgtttcttcatgttggccaggctggtctt--gaactcccgacctcaggtgatccatctgcctcggcctcccaaagtgctgggatgacagacgtgagccaccgcacccagcc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26153 110 +     34961 gtgtttcttcatgttggccaggctggtctt--gaactcccgacctcaggggatccatctgcctcggcctcccaaagtgctgggatgacagacgtgagccaccgcacccagcc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     236831 110 -    811265 gggtttcatcatgttggccaggctggtctt--gaactcccgacttcaagtgatccacctgcctcggcctcccagagtgctgggatgacaggtgtgagccactgcacccggtc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       276855 110 -    350446 gtgtttcttcatgttggccaggctggtctt--gaactcccgacttcaggggatccacctgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggcc
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             331548 112 +  11138919 gggtcttgctatattgcccaggctggtctccaaaacaccagggttcaaacaatcctcctgcctcattctctcacagggctgggattacagacatgagccaccatgcctggcT
i otoGar3.GL873584             C 0 I 202
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=81502.000000
s hg38.chrX_KI270880v1_alt     254613 49 +    284869 GCGAACTGCTGTT-AAGACACGGTGAGAATGAGCTG----------------------------------Gctctggaaaatca
s panTro5.chrX                 439759 49 + 155549662 GCGTACTGCTGTT-AAGACATGGTGAGAATGAGCTG----------------------------------Gctctgggaaatca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       332819 83 +    417917 GTGTACTGCTGTT-AAGACACGGTGAGAATGAGCTggctgggtgtggtggttcatgattctcatcccagagctctgggaaatca
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27404 83 -     38397 GAATTGTGCTGTT-AAGACAGAGTTAGAACGAGCTgactgggcgtggtggttcatgtctctcaccctagtgctctgggaggccc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26263 83 +     34961 GAATTGTGCTGTT-AAGACAGAGTGAGAACGAGCTgactgggcgtggtggttcatgtctctcaccctagtgctctgggaggccc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     236941 83 -    811265 GAATTGTACTGTT-AAGACACAGTGAGAACGAGCTgactgggcatggtggttcctgtctctcaccctagcgctctgggaggcca
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       276965 84 -    350446 GAATTGTGCTGTTAAAGACACAGTGAGAATGAGCTggctgggcgtggtggttcatgtctctcaccctagcgctctgggaggccc
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331660 202 +  11138919 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       428783 2044 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=165605.000000
s hg38.chrX_KI270880v1_alt     254662 70 +    284869 aggcaggaggatcacttgagtccaggagctcaagaccagcctgggcaacacagcaagacccctatctctc
s panTro5.chrX                 439808 70 + 155549662 aggcaggaggatcacttgactccaggagctcaagaccagcctgggcaacacagcaagacccctatctctc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       332902 70 +    417917 aggcaggaggatcacttgagtccaggagctcaagaccagcctgggcaacacagcaagacccctatctctc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27487 70 -     38397 aggtaggaggatcactggaggccaggagctcaagaccaatctgggcaacatagcaagacccctagctttc
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26346 70 +     34961 aggtaggaggatcactggaggccaggagctcaagaccaacctgggcaacatagcaagacccctagctttc
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       430827 70 +  25972781 aggtaggaggatcactggaggccaggagctcaagaccaacctgggcaacatagcaagacccctagctttc
i macNem1.NW_012017243v1       I 2044 C 0
s chlSab2.chrUn_KE147541v1     237024 70 -    811265 aggtacgaggatcactggaggccaggagctcaagaccaacctgggcaacatagcaagacccctatctttc
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277049 70 -    350446 aggtaggaggatcactggaggccaggagctcaagaccaacctgggcaacatagcaagacccctatcgctc
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             331660 202 +  11138919 I
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=29825.000000
s hg38.chrX_KI270880v1_alt     254732 12 +    284869 tctaaaaaaaaa
s panTro5.chrX                 439878 12 + 155549662 tctaaaaaaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       332972 12 +    417917 tctaaaaaaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27557 12 -     38397 tcttaaaaaaaa
i rheMac8.chrUn_NW_014831239v1 C 0 I 2
s macFas5.chrUn_AQIA01076778    26416 12 +     34961 tctgaaaaaaaa
i macFas5.chrUn_AQIA01076778   C 0 I 2
s macNem1.NW_012017243v1       430897 12 +  25972781 tcttaaaaaaaa
i macNem1.NW_012017243v1       C 0 I 2
s chlSab2.chrUn_KE147541v1     237094 12 -    811265 tcttaaaaaaaa
i chlSab2.chrUn_KE147541v1     C 0 I 2
s manLeu1.NW_012108508v1       277119 12 -    350446 tctaaaaaaaaa
i manLeu1.NW_012108508v1       C 0 I 17
s otoGar3.GL873584             331862 12 +  11138919 CCTAGAAATTAA
i otoGar3.GL873584             I 202 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=1672.000000
s hg38.chrX_KI270880v1_alt     254744 5 +    284869 --aaaaa
s panTro5.chrX                 439890 5 + 155549662 --aaata
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       332984 3 +    417917 --aaa--
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27571 3 -     38397 --aaa--
i rheMac8.chrUn_NW_014831239v1 I 2 I 17
s macFas5.chrUn_AQIA01076778    26430 3 +     34961 --aaa--
i macFas5.chrUn_AQIA01076778   I 2 I 1
s macNem1.NW_012017243v1       430911 3 +  25972781 --aaa--
i macNem1.NW_012017243v1       I 2 I 1
s chlSab2.chrUn_KE147541v1     237108 3 -    811265 --aaa--
i chlSab2.chrUn_KE147541v1     I 2 I 3
s otoGar3.GL873584             331874 5 +  11138919 GAAAA--
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       277131 17 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=8534.000000
s hg38.chrX_KI270880v1_alt     254749 27 +    284869 attag-caagcatggtggtgaatgcctg
s panTro5.chrX                 439895 27 + 155549662 attag-caagcatggtggtgaatgcctg
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       332987 24 +    417917 ---ag-caagcatggtggtgaatgcctg
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    26434 16 +     34961 aTCAGCCAAGCAT------------CTG
i macFas5.chrUn_AQIA01076778   I 1 I 2
s macNem1.NW_012017243v1       430915 16 +  25972781 attagccaagcat------------ctg
i macNem1.NW_012017243v1       I 1 I 2
s chlSab2.chrUn_KE147541v1     237114 16 -    811265 GTCAGCCAAGCTT------------CTG
i chlSab2.chrUn_KE147541v1     I 3 I 2
s otoGar3.GL873584             331879 19 +  11138919 TCTAACTAggcgg---------tgcctg
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e manLeu1.NW_012108508v1       277131 17 -    350446 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  27574 17 -     38397 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=161534.000000
s hg38.chrX_KI270880v1_alt     254776  89 +    284869 tggttt-caTcagtgaggtgtgat-----catgccg-ctgtact----------cgagcccgaggaacagagc------aaga-ccctgtctTGG------------GGGGGAAGAAACCCAAAA
s panTro5.chrX                 439922  88 + 155549662 tggttt-catcagtgaggtgtgat-----catgcca-ctgtact----------ccagcctgaggaacagagc------aaga-ccctgtcttgg------------gggggaa-aaacccaaaa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333011  88 +    417917 tggttt-catcagtgaggtgtgat-----catgccg-ctgtact----------cgagcctgaggaacacagc------aaga-ccctgtcttag------------ggggaaa-aaacccaaaa
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27591  83 -     38397 TGGTTT-CATcagtgaggtgtgat-----cgtgcca-ctgtgct----------ccagcccgagtgacaaagc------aagacccctgtcttgg------------------a-aaaaacaaaa
i rheMac8.chrUn_NW_014831239v1 I 17 I 4
s macFas5.chrUn_AQIA01076778    26452  83 +     34961 TGGTTT-CATcagtgaggtgtgat-----cgtgcca-ctgtgct----------ccagcccgagtgacaaagc------aagacccctgtcttgg------------------a-aaaaacaaaa
i macFas5.chrUn_AQIA01076778   I 2 I 4
s macNem1.NW_012017243v1       430933  82 +  25972781 tggttt-catcagtgaggtgtgat-----cgtgcca-ctgtgct----------ccagcctgagtgacaaagc------aaga-ccctgtcttgg------------------a-aaaaacaaaa
i macNem1.NW_012017243v1       I 2 I 14
s chlSab2.chrUn_KE147541v1     237132  83 -    811265 TGGTTT-CATcagtgcggtgtgat-----catgcca-ctgtact----------ccagcctgagtgacaaagc------aaga-ccctgtcttgg-----------------aa-aaaaacaaaa
i chlSab2.chrUn_KE147541v1     I 2 I 14
s manLeu1.NW_012108508v1       277148  82 -    350446 tggttt-catcagtgaggtgtgat-----cgtgcca-ctgtgct----------ccagcctgagtgacaaagc------aaga-ccctgtcttgg------------------a-aaaaacaaaa
i manLeu1.NW_012108508v1       I 17 I 14
s otoGar3.GL873584             331898 122 +  11138919 tggctcaaaggagtagggtgccagccctacatgccagatgtggtgggttcaaacccagccccggccaaaaagtgcaaaaaaaA-CCCAACCCCAACTAAGTATAGATGGCTATA-CATACCAAA-
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       297516 3156 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=410844.000000
s hg38.chrX_KI270880v1_alt     254865 179 +    284869 AAA---CAG-------------------------AGAAAGAATAAAC---------------TATCATAATGCTTAATTTTGTGTGCATTTATTT-------------AGCAGT---------GGGAACCAAATTGGCCTCCCCTAGGTAATTCAGCTATTCGTCTGAATTATGTGGGTTACTGTGTTACAGTCATCTCTTGTTTGATTTTAGTGAAACTGACTTA---ATTTTGCATACAAAAGCT
s panTro5.chrX                 440010 182 + 155549662 aaaaaacag-------------------------agaaagaataaaC---------------TATCATAATGGTTAATTTTGTGTGCCTTTATTT-------------AGCAGT---------GGGAACCAAATTGGCCTCCGCTAGGTAATTCAGCTATTCGTCTGGATTATGTGGGTTACTGTGTTACAGTCATCTCTTGTTTGATTTTAGTGAAACTGACTTA---ATTTTGCATACAAAAGCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333099 179 +    417917 aaa---CAG-------------------------AGAAAGAATAAAC---------------TATCATAATGCTTAATTTTGTGTGCCTTTATTT-------------AGCAGT---------GGGAACCAAATTGGCCTCCCCTAGGTAATTCAGCTATTCGTCTGGATTATGTGGGTTACTGTGTTACAGTCATCTCTTGTTTGATTTTAGTGAAACTGACTTA---ACTTTGCATACAAAAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27678 130 -     38397 ------------------------------------------------------------------------------------------------------------aCCACT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGTTATGAGTCTGGATTATGTGGGTAACTGTGTTGCAGTCATTTCTTCTTTGATTTCAGTGAAACTGAGTTAAATATTTTGCACACAAATGCT
i rheMac8.chrUn_NW_014831239v1 I 4 C 0
s macFas5.chrUn_AQIA01076778    26539 130 +     34961 ------------------------------------------------------------------------------------------------------------aCCACT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGCTATGAGTCTGGATTATGTGGGTAACTGTGTTGCAGTCATTTCTTCTTTGATTTCAGTGAAACTGAGTTAAATATTTTGCACACAAATGCT
i macFas5.chrUn_AQIA01076778   I 4 C 0
s macNem1.NW_012017243v1       431029 182 +  25972781 AAA---CAG-------------------------AGAAAGAATAAAT---------------TATCATCATGCTTAATTTTTTGTGCCTTTGTTT-------------ACCACT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGCTATGAGTCTGGATTATGTGGGTAACTGTGTTGCAGTCATTTCTTCTTTGATTTCAGTGAAACTGAGTTAAATATTTTGCACACAAATGCT
i macNem1.NW_012017243v1       I 14 C 0
s cerAty1.NW_012001098v1       300672 179 -   1025902 aaa---cag-------------------------agaaagaaTAAAT---------------TATCATAATGCTTAATTTTTTGTGCCTCTGTTT-------------ACCACT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGCTATGAGTCTGGATTGTGTGGGTAACTGTGTTGCAGTTATCTCTTCTTTGATTTGAGTGAAACTGAGTGA---ATTTTGCACACCAAAGCT
i cerAty1.NW_012001098v1       I 3156 I 1
s chlSab2.chrUn_KE147541v1     237229 182 -    811265 aaA---CAG-------------------------AGAAAGAATAAAT---------------TATCATAATGCTTAATTTTGTGTGCCTTTGTTT-------------ACCGCT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGCTATGAGTCTGGATTATGTGGGTAACTGTGTTGCAGTCATTTCTTCTTTGATTTGAGTGAAACTGAGTTAAATATGTTGCACACAAAAGCT
i chlSab2.chrUn_KE147541v1     I 14 C 0
s manLeu1.NW_012108508v1       277244 179 -    350446 AAA---CAG-------------------------AGAAAGAATAAAT---------------TATCATAATGCTTAATTTTTTGTGCCTTTGTTT-------------ACCACT---------GAGAACTGAACTGGCCTTCCCTTGGTAATTGAGCTATGAGTCTGGATTGTTTGGGTAACTGTGTTGCAGTTATCTCTTCTTTGATTTGAGTGAAACTGAGTGA---ATTTTGCACACCAAAGCT
i manLeu1.NW_012108508v1       I 14 C 0
s otoGar3.GL873584             332020 235 +  11138919 AAA---CAGTTTAAAATAGCATTGTCAATACTATAGGATGAGTGAATTTGATGGTGTTTGGGTGCCATGAGACTCAACTATTAGAGCTTTTAATTTGAAGTGCTTTAAACCATCTACAGGGGAGGGGATGAAATTCAGCTTCCCTGGGGATTCCTGTTATTTGGCTGGCTTTTGTGGGTAGC--TGTTACAGCTGCCTCTTCTTTGATTTGAGTGAAGCTCAATTG---ATT----GTACAAAACCT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=67303.000000
s hg38.chrX_KI270880v1_alt     255044 36 +    284869 GGTTCTAGGATCCTACCCCC---CCAAGACAGGTTAGTT
s panTro5.chrX                 440192 39 + 155549662 GGTTCTAGGATCCTACCCCCACCCCAAGACAGGTTAGTT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333278 36 +    417917 GGTTCTAGGATCCTACCCCC---CCAAGACAGGTTAGTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27808 36 -     38397 GCTTCTAGGATCCCAACCCA---CCGAAACAGCTTAGTT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26669 36 +     34961 GCTTCTAGGATCCCAACCCA---CCGAAACAGCTTAGTT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431211 36 +  25972781 GCTTCTAGGATCCCAACCCA---CCAAAACAGCTTAGTT
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     237411 36 -    811265 GCTTCTAGGATCCCAACCCA---CCAAAACAGCTTAGTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277423 36 -    350446 GCTTCTAGGATCCCAACCCA---CCAAAACAGTCTAGTT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332255 21 +  11138919 -------------TGTCCTA-----AGGTCATGTGGGTC
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 376552 1624 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       300851  1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=174271.000000
s hg38.chrX_KI270880v1_alt     255080 65 +    284869 ATGATGGGCAATCTCTCGACCTCATGCCTGACATCTT----ACATGTGTCGAGAAATCAAGAAGGTCGA
s panTro5.chrX                 440231 65 + 155549662 ATGACGGGCAATCTCTCGACCTCATGCCTGACATCTT----ACATGTGTCGAGAAATCAAGAAGGTCGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333314 65 +    417917 ATGACGGGCAATCTCTCGACCTCATGCCTGACATCTT----ACATGTGTTGAGAAATCAAGAAGGTCGA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27844 65 -     38397 ACGGCAGGTAATCTCTTGACCTCATGTCTGACGTCTT----CCATGTGTCGACAAAACAAGAAGGTCAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26705 65 +     34961 ACGGCAGGTAATCTCTTGACCTCATGTCTGACGTCTT----CCATGTGTCGACAAAACAAGAAGGTCAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431247 65 +  25972781 ACGGCAGGTAATCTCTTGACCTCATGTCTGACGTCTT----CCATGTGTCGACAAAACAAGAAGGTCAA
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     237447 65 -    811265 ATGGCAGGCAATCTCTTGACCTCATGCCTGACATCTT----CCATGTGTCGACAAAACAAGAAGGTCAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277459 65 -    350446 ATGGCAGGCAATCTCTTGACCTCATGTCTGACGTCTT----CTGTGTGTTGACAAAACAAGAAGGTCAA
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332276 67 +  11138919 ATGGCGGGGAATCTGTCAAGATCAGGGTTAACATTTTTGGCCCATATG--GAGGGGTCATGGAAGCCCA
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 378176 65 + 123869142 ATGGTGGGCGATCTCTGGGCCTCATGCATGACCCTTG----ACACATGTGCAAGAGTCACGGAAGTCAA
i canFam3.chrX                 I 1624 I 319
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       300851  1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=67270.000000
s hg38.chrX_KI270880v1_alt     255145 24 +    284869 AATATAAGTGGAGAGGTTGACGCT
s panTro5.chrX                 440296 24 + 155549662 AATATAACTAGAGAGGTTGGCGCT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333379 24 +    417917 AATATAAGTGGAGAGGTTGACGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27909 24 -     38397 AATATAAGTGGAGAGGTTGACGCT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26770 24 +     34961 AATATAAGTGGAGAGGTTGACGCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431312 24 +  25972781 AATATAAGTGGAGAGGTTGACGCT
i macNem1.NW_012017243v1       C 0 I 171
s chlSab2.chrUn_KE147541v1     237512 24 -    811265 AATATAAGTGGAGAGGTTGACGCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277524 24 -    350446 AATATAAGTGGAGAGGTTGACGCT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332343 24 +  11138919 GATATGAATGTGGAGTTTTACCCT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       300851  1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=47351.000000
s hg38.chrX_KI270880v1_alt     255169 38 +    284869 CCATTCTGGGGCA-GCCCTGTAACTGTCCACCAATGTTG
s panTro5.chrX                 440320 38 + 155549662 CCATTCTGGGGCA-GCCCTGTAACTGTCTGTCAATGTTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333403 38 +    417917 CCATTCTGGGGCA-GCCCTGTGACTGTCTGTCAATGTTG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27933 39 -     38397 TCATTCCGGACAATGCCCTGCAACTGTCTGCAAATGTTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26794 39 +     34961 TCATTCCGGACAATGCCCTGCCACTGTCTGCAAATGTTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     237536 39 -    811265 TCATTCTGGACAATGCCCTGCAACTGTCCATAAATGTCG
i chlSab2.chrUn_KE147541v1     C 0 I 50
s manLeu1.NW_012108508v1       277548 39 -    350446 TCATTCCGGACAATGCCCTGCAACTGTCTGCAAATGTTG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332367 37 +  11138919 TGGTTCTGTTGGG-GTCCTGAGCCTGTCAGGACGCCTG-
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e cerAty1.NW_012001098v1       300851  1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       431336 171 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=90971.000000
s hg38.chrX_KI270880v1_alt     255207  88 +    284869 TGTCTGAGCTGGGCTGTGTCCACGAGCTTCCTG-TTGTATT--CTAGGGGCTCATAAGTTCAGAAAGATACTCA--------------AATGGGGAGTTTTGTCC
s panTro5.chrX                 440358  88 + 155549662 TGTCTGAGGTGGGCTGTGTCCACGAGCTTCCTG-TTGTATT--CTAGGGGCTCATAAGTTCAGAAAGATACTCA--------------AATGGGGAGTTTTGTCC
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333441  91 +    417917 TGTCTGAGCTGGGCTGTGTCCACCAGCGTCCTGTTTGTATTACCTAGGAGCTCATAAGTTCAGAAAGATACTCA--------------AATGGGGAGTTTTGTCC
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  27972 104 -     38397 TGTCTGAACTGGGCTGTGCCCACGAGTTTCCTC-CTGTATCGCGAATGAGTTCATCAGTTCAGAAAGATACACAACGGCTATTGCTGGAATGGGGAATTGTGTCC
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    26833 104 +     34961 TGTCTGAACTGGGCTGTGCCCATGAGTTTCCTC-CTGTATCGCGAATGAGTTCATCAGTTCAGAAAGATACACAACGGCTATTGCTGGAATGGGGAATTGTGTCC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s manLeu1.NW_012108508v1       277587 104 -    350446 TGTCTGAACTGGGCTGTGTCCACAAGTTTCCTG-GTGTATCGCGAATGAGCTCATCAGTTCAGAAAGATACTCAATGGCTATTGCTGGAATGGGGAAATGTGTCC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332404  70 +  11138919 CGTCTGAACCTGGCTGTGTGAAT-ATTGACCTG-TTGTAAT-------------------------GATGCTCGCAGGTG--------AATGAGGGGGGCTGTCC
i otoGar3.GL873584             C 0 I 160
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e chlSab2.chrUn_KE147541v1     237575  50 -    811265 I
e cerAty1.NW_012001098v1       300851   1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       431336 171 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=1365.000000
s hg38.chrX_KI270880v1_alt     255295 1 +    284869 T
s panTro5.chrX                 440446 1 + 155549662 T
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333532 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28076 1 -     38397 T
i rheMac8.chrUn_NW_014831239v1 C 0 I 1
s macFas5.chrUn_AQIA01076778    26937 1 +     34961 T
i macFas5.chrUn_AQIA01076778   C 0 I 1
s manLeu1.NW_012108508v1       277691 1 -    350446 T
i manLeu1.NW_012108508v1       C 0 I 1
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             332474 160 +  11138919 I
e chlSab2.chrUn_KE147541v1     237575 50 -    811265 I
e cerAty1.NW_012001098v1       300851 1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       431336 171 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=-564.000000
s hg38.chrX_KI270880v1_alt     255296 6 +    284869 GATGA-A
s panTro5.chrX                 440447 6 + 155549662 GATGA-A
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333533 6 +    417917 GATGA-A
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28078 5 -     38397 GGTGA--
i rheMac8.chrUn_NW_014831239v1 I 1 I 1
s macFas5.chrUn_AQIA01076778    26939 5 +     34961 GGTGA--
i macFas5.chrUn_AQIA01076778   I 1 I 1
s chlSab2.chrUn_KE147541v1     237625 6 -    811265 GGTGAC-
i chlSab2.chrUn_KE147541v1     I 50 C 0
s manLeu1.NW_012108508v1       277693 6 -    350446 GGTGAC-
i manLeu1.NW_012108508v1       I 1 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             332474 160 +  11138919 I
e cerAty1.NW_012001098v1       300851 1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       431336 171 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=282958.000000
s hg38.chrX_KI270880v1_alt     255302 124 +    284869 ACCCAGGATGGAATACAGGACAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcggtggctcacgcctgtaaccccagcac-tttgggaggccgaggatggaggatc
s panTro5.chrX                 440453 123 + 155549662 ACCCAGGATGGAATACAGGGCAAAAAA-TACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcggtagctgacgcctgtaatcccagcag-tttgggaggccgaggatggaggatc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333539 123 +    417917 CCCCAGGATGGAATACAGGACAAAAAA-TACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcggtgga-catgcctgtaattccagcacttttgggaggccgaggatggaggatc
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28084 124 -     38397 GCCTAGGATGGAATACAGGGCAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcagtggttcacgcctgtaatcccagcac-tttgggaggccgaggagggtggatt
i rheMac8.chrUn_NW_014831239v1 I 1 C 0
s macFas5.chrUn_AQIA01076778    26945 124 +     34961 ACCTAGGATGGAATACAGGGCAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcagtggttcacgcctgtaatcccagcac-tttgggaggccgaggagggtggatt
i macFas5.chrUn_AQIA01076778   I 1 C 0
s macNem1.NW_012017243v1       431507 124 +  25972781 ACCTAGGATGGAATACAGGGCAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcagtggttcacgcctgtaatcccagcac-tttgggaggccgaggagggtggatt
i macNem1.NW_012017243v1       I 171 C 0
s chlSab2.chrUn_KE147541v1     237631 124 -    811265 ACCCAGGATGGAATACAGGGCAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccgggcgcagtggctcacgcctgtaatcccagcac-tttggcaggccgaggagggtggatg
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277699 124 -    350446 ACCTAGGATGGAATACAGGGCAAAAAAATACATTAATATTTGAGTCTTCTTAAGAAAGTCTAggccggacgcggtggctcacgcctgtcatcccagcac-tttgggaagcagaggcaggtggatt
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             332474 160 +  11138919 I
e cerAty1.NW_012001098v1       300851   1 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=681327.000000
s hg38.chrX_KI270880v1_alt     255426 258 +    284869 gcctgaggtcaggtgttcgagaccagcctggccaacatggtgaaac--cctctttctactaaggatacgaaaattagccaggagttagggcgggttcctgtcatcccagctactcgggaggctgaggcaggagaattgcttgaatcctgggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctggatgatgacaaactctgtctcaaaacaaaacaaaacaaaaaGTGGAAACTGGAAACAGCTT
s panTro5.chrX                 440576 258 + 155549662 gcctgaggtcaggtgttcgagaccagcctggccaacatggtgaaaa--cctctttctactaaaaataagaaaattagccgggattgggggcgggttcctgtcatgccagctactcgggaggctgaggcaggagaattgcttgaatcctgggaggcggaggttgcagtgagctgagattgcgccactgcactccagcctggatgatgagaaactctgtctcaaaacaaaacaaaacaaaaaGTGGAAACTGGAAACAGCTT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333662 258 +    417917 gcctgaggtcagttgttcgagaccagcctggccaacatggtgaaac--cgtctttctactaaagatacgaaaattagccaggagtgggggcgggttcctgtcatcccagctactcgggaggctgaggcaggagaattgcttgaatcctgggaagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgatgagaaactctgtctctaaacaaaacaaaacaaaaaGTGGAAACTGGAAACAGCTT
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28208 246 -     38397 gcctgaggtcaggtgttcgagaccagcctggccaacatggtgaaac--cctttcttcattaaaaacacgaaaattagccaggagtggtggcaggtgcctgtcatcccagctacttgggaggctgaggcaggtgagtctcctgaa-cctgggaggtggagatggcagtgatctgagattgcaccgctgcactccagccgggatgatgagaaaatctgtctcaaaaaacaaacaaacaaac-----------aaaaCACCCT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27069 246 +     34961 gcctgaggtcaggtgttcgagaccagcctggccaacatggtgaaac--cctttcttcattaaaaacacgaaaattagccaggagtggtggcaggtgcctgtcatcccagctacttgggagactgaggcaggtgagtctcctgaa-cctgggaggtggagatggcagtgatctgagattgcaccgctgcactccagccgggatgatgagaaaatctgtctcaaaaaacaaacaaacaaac-----------aaaaCACCCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431631 246 +  25972781 gcctgaggtcaggtgttcgagaccagcctggccaacatggtgaaac--cctctcttcattaaaaacacgaaaattagccaggagtggtggcaggtgcctgtcatcccagctacttgggagactgaggcaggtgagtctcttgaa-cctgggaggtggagatggcagtgatctgagattgcaccgctgcactccagccgggatgatgagaaaatctgtctcaaaaaacaaacaaacaaac-----------aaaaCACCCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       300852 243 -   1025902 Gcctgaggtcaggtgttcgagaccggcctggccaacatgatgaaac--cctctctccattaaaaacacgaaaattagccaggagtggtggtgggtgcctgtcatcccagctacttgggagactgaggcaggtgagtctcttgaa-cctgggaggtggagatggcagtgatctgagattgcaccactgcactccagccgggatgatgagaaaatctgtctcaaaaaaaaaataaata--------------gaaaCACCCT
i cerAty1.NW_012001098v1       I 1 C 0
s chlSab2.chrUn_KE147541v1     237755 253 -    811265 gcctgaggtcaggtgttcgagaccagcctggccaacatgatgaaactgcgtctctccattaaaaacacgaaaattagccaggagtggtggcgggtgcctgtcatcccagctacttgggagactgaggcaggtgagtctcttgaa-cctgggaggtggagatggcagtgatctgagattgcaccgctgcactccagccgggataatgagaaaatctgtctcaacaaacaaacaaacaaac------aaaagaaaaCACCCT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       277823 250 -    350446 gcctgaggtcaggtgtttgagaccagcctggccaacatggtgcaac--cctctctccattaaaaacacgaaaattagccaggagtggtggtgggtgcctgtcatcccagctacttgggagactgaggcaggtgagtctcttgaa-cctgggaggtgaagatggcagtgatctgagattgcaccactgcattccagccgggatgatgagaaaatctgtctcaa-aaaaaaaaaaaaaaaa------aaaTGGAAACACCCT
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e otoGar3.GL873584             332474 160 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=87684.000000
s hg38.chrX_KI270880v1_alt     255684 29 +    284869 TTATGCTCTTTTATTTCAATAGTTTACAG---
s panTro5.chrX                 440834 29 + 155549662 TTATGCTCTTTTATTTCAATGGTTTACGG---
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333920 29 +    417917 TTATGCTCTTTTATTTCAACGGTTTACGG---
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28454 29 -     38397 TTATGCTCTTTTATTTCAATGGTTTACGG---
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27315 29 +     34961 TTATGCTCTTTTATTTCAATGGTTTACGG---
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431877 29 +  25972781 TTATGCTCTTTTATTTCAATGGTTTACGG---
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       301095 29 -   1025902 TTATGCTCTTTTATTTCAGTGGTTCACGT---
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238008 29 -    811265 TTATGCTCTTTTATTTCAACGGTTTACGG---
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       278073 29 -    350446 TTATGCTCTTTTATTTCAGTGGTTCACGG---
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332634 32 +  11138919 CTTTGCCCCTTCATGTGCATGGCCTCTCACCC
i otoGar3.GL873584             I 160 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  67207 2457 + 141252148 M
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=128796.000000
s hg38.chrX_KI270880v1_alt     255713 36 +    284869 AACCC-AGGATGGTATCCAATGAGAGCTTGCATTCAG
s panTro5.chrX                 440863 36 + 155549662 AACCC-AGGATGGTATCCAATGAGAGCTTGCATTCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333949 36 +    417917 AACCC-AGGATGGTATCCAATGAGAGCTTGCATTCAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69715 36 + 141252148 aactc-AGGATCATATCCAATGAGAGCTTGCATTCAG
i nomLeu3.chrX                 M 2457 C 0
s rheMac8.chrUn_NW_014831239v1  28483 36 -     38397 AACCA-AGGAGCCTATCCTGTCAGAGCTTGCATTCAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27344 36 +     34961 AACCA-AGGAGCCTATCCTGTCAGAGCTTGCATTCAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431906 36 +  25972781 AACCA-AGGAGCCTATCCTGTCAGAGCTTGCATTCAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       301124 36 -   1025902 AACCA-AGGAGCCTATCCTGTCAGAGCTTGCATTCAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238037 36 -    811265 AACCA-AGGAGCCTAGCCTATCAGAGCTTGCACTCAG
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       278102 36 -    350446 AACCA-AGGAGCCTATCCTGTCAGAGCTTGCATTCGG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332666 37 +  11138919 AACCAGAGGAGCGTGTCCTATCAGAACTCAGGCTCAG
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=396786.000000
s hg38.chrX_KI270880v1_alt     255749 119 +    284869 GCATGGGGAAGACACCGTT-GAGAAGAATGAAAATGA-TTACAATCATGCAGAAAAAGAAACTTGGGCACCCAAAACACACCCAGGAAAATGAGGGAA-GGGAAAGTATTTGAATTTGACTA
s panTro5.chrX                 440899 119 + 155549662 GCATGGGGAAGACACCGTT-GAGAAGAATGAAAATGA-TTACAATCATGCAGAAATAGAAACTTGGGCACCCAAAACACACCCAGGAAAATGAGGGAA-GGGAAGGTATTTGAATTTGACGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       333985 120 +    417917 GCATGGGGAAGACACAGTT-GAGAAGAATGAAAATGA-TTACAATCATGCAGAAAAAGAAACTTGGGCACCCAAAACACACCCAGGAAAATGAGGGAAGGGGAAAGTATTTGAATTTGACTA
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28519 120 -     38397 GCATGGAGAAGACACCATT-GAGGAGGATGAAAATAATTTACAGTCATGTGGAAAAAGAAACTTGGGCGCCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACTA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27380 120 +     34961 GCATGGAGAAGACACCATT-GAGGAGGATGAAAATGATTTACAGTCACGTGGAAAAAGAAACTTGGGCGCCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACTA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       431942 120 +  25972781 GCATGGAGAAGACACCATT-GAGGAGAATGAAAATGATTTACAGTCACGTGGAAAAAGAAACTTGGGCGCCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACTA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       301160 120 -   1025902 GCATGGAGAAGACACCATT-GAGGAGAATGAAAATGATTTACAGTCATGTGGAAAAAGAAACTTCGGCACCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACTA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238073 120 -    811265 GCATGGAGAAGACACCATT-GAGGAGAATGAAAATGATTTGCAGTCATGTGGAAAAGGAAACTTGGGCGCCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACTA
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       278138 120 -    350446 GCATGGAGAAGACACCATT-GAGGAGAATGAAAATGATTTACAGTCATGTGGAAAAAGAAACTTGGGCGCCCAAAACACAGCCAGGAAAATGAGGGTA-AGGGAAGTATTTGAATTTGACGA
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332703 121 +  11138919 AAACAGTAAGGACACAATCGGGGGAGAATGAAAATGATTAAAAATCATGCTGAAAAAGAAAACCTGACACCAGACACACATCCAGCAGGATGATGGAA-GGAGAAGCATTTGAATTTGAGCA
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e nomLeu3.chrX                  69751   0 + 141252148 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=162453.000000
s hg38.chrX_KI270880v1_alt     255868 37 +    284869 GCAATGACAAGCCGCAGATACATGAGCTCAGAGGACT
s panTro5.chrX                 441018 37 + 155549662 GCAATGACAAGCCGCAGATACATGAGCTCACAGGACT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334105 37 +    417917 GTAATGACAAGCCGCAGATACATGAGCTCACAGGACT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69751 37 + 141252148 GCAATGACAAGCCGCAGATACATGAGTTCACAGGACT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28639 37 -     38397 GCAATGCCAAGCCGCAGATACATGAGTTCACAGGACT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27500 37 +     34961 GCAATGCCAAGCCGCAGATACATGAGTTCACAGGACT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       432062 37 +  25972781 GCAATGCCAAGCCGCAGATACATGAGTTCACAGGACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       301280 37 -   1025902 GCAATGCCAAGCCGCAGATACATGAGTTCACAGGACT
i cerAty1.NW_012001098v1       C 0 I 23
s chlSab2.chrUn_KE147541v1     238193 37 -    811265 GCAATGCCAGGCCGCAGATACATGAGTTCACAGGACT
i chlSab2.chrUn_KE147541v1     C 0 I 23
s manLeu1.NW_012108508v1       278258 37 -    350446 GCAATGCCAAGCCACAGATACGTGAGTTCACAGGACT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             332824 36 +  11138919 GAAGTGCCAAGCAGCAGACACATGAG-TCATCGGGCT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=126801.000000
s hg38.chrX_KI270880v1_alt     255905 50 +    284869 GTGGCTGGACAGACATCAAGGGTGGACAGAACCCAGCCTGTCAGGACTGA
s panTro5.chrX                 441055 50 + 155549662 GTGGCTGGACAGACATCAAGGGTGGACAGAACCTAGCCTGTCAGGACTGA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334142 50 +    417917 GTGGCTGGACAGACATCAAGGGTGGACAGAACCCAGCCTGTCAGGACTGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69788 50 + 141252148 GTGGCTGGACAGACATCAAGCGTGGACAGAACCCGGCCAGTCAGCCCTGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28676 50 -     38397 GTGGCTGTTCAGACGTCAAGGGTGGACAGAACCCGGCCAGTCAGCCCTGA
i rheMac8.chrUn_NW_014831239v1 C 0 I 6
s macFas5.chrUn_AQIA01076778    27537 50 +     34961 GTGGCTGTTCAGACGTCAAGGGTGGACAGAACCCAGCCAGTCAGTCCTGA
i macFas5.chrUn_AQIA01076778   C 0 I 6
s macNem1.NW_012017243v1       432099 50 +  25972781 GTGGCTGTTCAGACGTCAAGGGTGGACAGAACCCAGCCAGTCAGCCCTGA
i macNem1.NW_012017243v1       C 0 I 6
s manLeu1.NW_012108508v1       278295 50 -    350446 GTGGCTGGACAGACGTCAAGGGTGGACAGAACTTGGCCAGTCAGCCCTGA
i manLeu1.NW_012108508v1       C 0 I 6
s otoGar3.GL873584             332860 50 +  11138919 GCCGGTGTGCAGACATCAAACGTGGCCGGCGCCCAGCAGCTCAGCCCTGA
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     238230 23 -    811265 I
e cerAty1.NW_012001098v1       301317 23 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=234828.000000
s hg38.chrX_KI270880v1_alt     255955 62 +    284869 CACCCTAGGGTTGTCCGTCTACAAATCGGCTCCTGATT--GGTCTACCCGGGACTGTGGTCCAC
s panTro5.chrX                 441105 62 + 155549662 CACCCTAGGGATGTCCGTCTACAAATCGGCTCCTGATT--GGTCTACCCGGGACTGTGGTCCAG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334192 62 +    417917 CACCCTACGGTTGTCCGTCTACAAATTGGCTCCTGATT--GGTCTACCCGGGACTGTGGTCCAC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69838 62 + 141252148 CACCCTAGGGCTGTCCGTCTAGAAATCGGCTCCTGATT--CCTCTACCTAAGAATGTGGTCCAC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28732 62 -     38397 CACCCCAGGGCAGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCTGGGACTGTAGTCCAc
i rheMac8.chrUn_NW_014831239v1 I 6 I 180
s macFas5.chrUn_AQIA01076778    27593 62 +     34961 CACCCCAGGGCAGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCCGGGACTGTAGTCCAc
i macFas5.chrUn_AQIA01076778   I 6 C 0
s macNem1.NW_012017243v1       432155 62 +  25972781 CACCCCAGGGCAGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCCGGGACTGTAGTCCAc
i macNem1.NW_012017243v1       I 6 I 199
s cerAty1.NW_012001098v1       301340 62 -   1025902 CACCCCAGGGCCGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCGGGGACTGTAGTCCAc
i cerAty1.NW_012001098v1       I 23 C 0
s chlSab2.chrUn_KE147541v1     238253 62 -    811265 CACCCCAGGGCAGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCCGGGACTGTAGTCCAc
i chlSab2.chrUn_KE147541v1     I 23 I 180
s manLeu1.NW_012108508v1       278351 62 -    350446 CACCCCAGGGCAGTCCGTCTACAAATCGGTTCCTGATT--CCTCTACCCGGGACTGtggtccac
i manLeu1.NW_012108508v1       I 6 C 0
s otoGar3.GL873584             332910 54 +  11138919 CACCCAAGGGCTGTGCTCTGACAAATCGTCGGGTGCTTAAGCTCTACT----------GTCCAC
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=14127.000000
s hg38.chrX_KI270880v1_alt     256017 8 +    284869 GGTCATTG
s panTro5.chrX                 441167 8 + 155549662 GGTCATTG
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334254 8 +    417917 GGTCATTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69900 8 + 141252148 GGTCATTG
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    27655 8 +     34961 tgtccttg
i macFas5.chrUn_AQIA01076778   C 0 I 1
s cerAty1.NW_012001098v1       301402 8 -   1025902 tgtcattg
i cerAty1.NW_012001098v1       C 0 I 901
s manLeu1.NW_012108508v1       278413 8 -    350446 tgtcattg
i manLeu1.NW_012108508v1       C 0 M 1402
s otoGar3.GL873584             332964 8 +  11138919 TGCCATTT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=-3129.000000
s hg38.chrX_KI270880v1_alt     256025 3 +    284869 -AAA
s panTro5.chrX                 441175 3 + 155549662 -AAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334262 2 +    417917 --AA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69908 3 + 141252148 -AAA
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    27664 2 +     34961 -aa-
i macFas5.chrUn_AQIA01076778   I 1 I 218
s otoGar3.GL873584             332972 3 +  11138919 CAG-
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=128698.000000
s hg38.chrX_KI270880v1_alt     256028 217 +    284869 AATATGTCATGGAGGCTCCACGTACACTCAAGCTGTGGGCAGACAGTTCCATGATGGGACTGCACCTCGTATCAGAAAGGGCCTCCCATCCTCCCCTTCTTTAATTCCACCCTCC-TGACGTCCGACTACTTCACTCCATACAACCACATGTCCTCAAGACAATGGGCAACGGAT-GCCGTTTGGTTCAGTGGAGGCAAGAAACATGATTTATGAATGT
s panTro5.chrX                 441178 217 + 155549662 AATATGTCATGGAGGCTCCACGTACACTCAAGCTGTGGGCAGACAGTTCCATGATGGGACTGCACCTTGTATCAGAAAGGGCCTCCCATCCTCCCCTTCTTTAATTCCACCCTCC-TGACGTCCGACTACTTCACTCCACACAACCACATGTCCTCAAGACAGTGGGCAACGGAT-GCCGTTTGGTTCAGTGGAGGCAAAAAGAATGATTTATGAATGT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334264 217 +    417917 AATATGTCATGGAGGCTCCAGGTACACTCAAGCTGTGGGCAGACAGTTCCATGATGGGACTGCACCTCGTATCAGAAAGGGCCTCCCATCCTCCCCTTCTTTAATTCCACCCTCC-TGACGTCCCAGTACTTCACCCCATACAACCACATGTCCTCAGGACAATGGGCAACGGAT-GCCGTTTGGTTCAGTGGAGGCAAAAAACATGATTTATGAATGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  69911 216 + 141252148 CATATGTCATGCAGGCTCCACGTACACTC-AGCTGCGGGCAGACAGTTGCATGAGGGGACTGCACCTCGTATCAGAAAGGGCCTCCCATCCTCCCCTTCTTTAATTCCACCCTCC-TGGCGTCCCACTACTTCACTGCATACAACCACAAGTCCTCAAGACAATGGGAAACGGAT-GCTGTTTGCTTCAGTGGAGGCAAAACACATGATTTATGAATGT
i nomLeu3.chrX                 C 0 C 0
s otoGar3.GL873584             332975 211 +  11138919 GATGTGTCAGCAAGGCCCCATGTGTGCT--ATCCTCAGGAAGATGGGCCCACTGTGGGACT----CCCGTGTCAAAAGGCACACCCCGCCCTCTTCTCCCTAAGCCTCCCCTTCCGTGCTGTC--ACTCCGTGCCCCTCTAAAGCCCCACGTCCTTGACAGAATGTACAACTCAGAGCTGTTTGGTTCAGGACAGAGGAAAAAAATAATCTATTAAGGT
i otoGar3.GL873584             C 0 I 8
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I
e macFas5.chrUn_AQIA01076778    27666 218 +     34961 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=16992.000000
s hg38.chrX_KI270880v1_alt     256245 38 +    284869 TGTTTACGTTTTAACAATTTAAATTTATGTTTATTATA
s panTro5.chrX                 441395 38 + 155549662 TGTTTACGTTTTAACAATTTAAATTTATGTTTATTATA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334481 38 +    417917 TGTTCACGTTTTAACAATTTAAATTTATGTTTACTATA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70127 34 + 141252148 TGTTTACGTTTTAACAATTTAA----ATGTATATTATA
i nomLeu3.chrX                 C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186  8 +  11138919 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I
e macFas5.chrUn_AQIA01076778    27666 218 +     34961 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=162090.000000
s hg38.chrX_KI270880v1_alt     256283 421 +    284869 TTAAATATAAT------TTTATATTTTTATAATGAATATAAAAATATTTATTATATTTTAAATAGTTTAAAAATATTATGAAATTATTTTAATTTTATAAATATATTA---AACGTATTTGTATTTTTATAAAATATATAAAATTATATATTTATAATTT----------------------TTAAAATAT---AAAAT-TATTTTAATTTTATA-AATATAT---------TTATAGTTTTTATA-----------AATATAT--TAATA---AACATATT----------------TCTATTTtataa---------------aatatataaaattatatat------------------ttataat-----------------------tttat-aatatatc--------taata---aatatattataatatcatataacatattatatatcataatatatag----------------------------------------ctaataaatataat--atataatatatactaaaatatttaataAAG-ATGTTT-TTAAATA-TAAAATACATATTA---TTTATTTATAGAAATACATA-TTTTATA
s panTro5.chrX                 441433 417 + 155549662 TTAAATATAAT------TTTATATTTTAATAATGAATATAAAAATATTTATTATATTTTAAATAGTTTAAAAATAT---GAAATTATTTTAATTTTATAAATATATTA---AACATATTTGTATTTTTATAAAATATATAAAATTATATATTTATAATTT----------------------TTAAAATAT---AAAAT-TATTT-AATTTTATA-AATATAT---------GTATAGTTTTTATA-----------AATATAT--TAATA---AACATATT----------------TCTATTTtataa---------------aatatataaaattatatat------------------ttataat-----------------------tttat-aatatatc--------taata---aatatattataatatcatataacatattatatatcataatatatag----------------------------------------ctaataaatataat--atataatatatactaaaatatttaataAAG-ATGTTT-TTAAATA-TAAAATACATATTA---TTTATTTATAGAAATACATA-TTTTATA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       334519 419 +    417917 TTAAATATAAT------TTTATATTTTTATAATGAATAT-AAAATATGTATTATATTTTAA--AGTTTAAAAATATTATGAAATTATTTTAATGTTATAAATATATTA---AACATATTTGTATTTTTATAAAATATATAAAATTATATATTTATAATTT----------------------TTAAAATAT---AAAAT-TATTTTAATTTTATA-AATATAT---------TTATAGCTTTTATA-----------AATATAT--TAATA---AACATGTT----------------TCTA-TTTATAA---------------AATATAT-AAATTATATAT------------------TTATAAT-----------------------TTtat-aatatatc--------taata---aatatattataatatcatataatatattatataccataatatataat-----------------------------------atatctaataaatata----ttataatataTACGAAAATATTTAATAAAG-ATATTT-TTAAATA-TAAAATACATATTA----TTATTTATAGAAATACATATTTTTATA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70161 600 + 141252148 TTAAATATAAT------TTTATATTTTTATAATGAATATAAAAATATTTATTATATTTTAAATAGTTTTAAAATAT---GAAATTATTTTAATTTTATAAATATATTAATCAACATATTTCTATTTTTATAAAATGTATAAAATTATATATTTATAATTTTATAATATATCTAATAAATATATTATAATAT---ATAATATATCATAATATCATATAATATGTTATACATCATAATATGTTATATATCATAATATATAATATATCATAATATATAACATATCATAATATATAATATAGTATATATCATAATATATAACATATCATAATATATAATATAGTATATATCATAATATATAATATATCATAATATATAATATAGTATATATCATAATCTAT-AATATATCATATCATATAATATAGTATATATCATAATATCATATAATATAGTATATATCATAATATATAATATATCATAATATCATATAATATAGTATATATCATAATATATAATATATCTAATAAATATAATATATACTAAAATATTTAATACAT-ATATTTAAAAAATA-TAAAATATATATTATTATTTATTTATAGAAATATATATTTTTATA
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    27884 315 +     34961 TTTAATATGATGTAAAATTTATATTTCTATAATTAATATAAAAACATTTGTCGTAT-------AGTTAATAAATATTTTGAAA-------------------ACATTA---A------TTGTATTTTTAATAAAT---------------------ATTT----------------------TGAAAATATTACAAAAA-TATTTTAATTTTAT--AATATGT-------------------------------------------TAACa---aatatatt---------------------------a---------------aatatat------------------------------ttatgat-----------------------tttataaatatatt-------ataata---aatatatta-----------aatacattataaatataaatatataat---------------------------------------ataataaaaat-----gttaaaaatat----aaatatatAATATAGTACATTT-TAAAATATTAGAAAATATATTA-----TAATTACAT-TATAAATA-TTTTGT-
i macFas5.chrUn_AQIA01076778   I 218 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186   8 +  11138919 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I
e panPan2.chrUn_NW_014024190v1 166396 3069 -    177848 I

a score=188335.000000
s hg38.chrX_KI270880v1_alt     256704 176 +    284869 TATTTATAATTAATATATAAAATATTGGTATAAAATAATTTATTAAAATAATTTAAATTTTCATAATTTAAATTTATATTTATTATATTAAATGTAATAACTTCATATTTTTATAATTAATATAAAATATTTATTAAATAATAATTTATTCT-AAAAGCGCTCAGAATTTCAAAGCT
s panTro5.chrX                 441850 176 + 155549662 TATTTATAATTAATATATAAAATATTGGTATAAAATAATTTATTAAAATAATTTAAATTTTCATAATTTAAATTTATATTTATTATATTAAATGTAATAACTTCATATTTTTATAATTAATATAAAATATTTATTAAATAATAATTTATTCT-AAAAGCTCTCAGAATTTCAAAGCT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169465 175 -    177848 TATTTATAATTAATATAT-AAATATTGGTATAAAAT-ATTTATTAAAATAATTTACATTTTCATAATTTAAATTTATATTTATTATATTAAATGTAATAACTTCATATTTTTATAATTAATGTAAAATATTTATTAAATAATAATTTATTCTAAAAAGCTCTCAGAATTTCAAAGCT
i panPan2.chrUn_NW_014024190v1 I 3069 C 0
s gorGor5.CYUI01015925v1       334938 175 +    417917 TATTTATAATTAATATATAAAATATTGGTAT-AAATAATTTATTAAAATAATTCAAATTTTCATAATTTAAATTTATATTTATTATATTAAATGTAATAACTTCATATTTTTATAATTAATATAAAATATTTATTAAATAATAATTTATTCT-AAAAGCTCTCAGAATTTCAAAGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70761 176 + 141252148 TATTTATAATTAATATATAAAATATTGGTATACAATAATTTATTAAAATAATTTAAATTTTCATAATTTAAATTTATATTTATTATATTAAATGTAATAACTTCATATTTTTATAATTAATAGAAAATATTTGTTAAATAATAATTTATTCT-AAAAGCCCTCAGAATTTCAAAGCT
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    28199 157 +     34961 ---TTATAATTAGTATATAAAAATTTATTA--AAAT-ATTTATGATAATTATT----TTTTAATAATTTAA------ATTTATTATATTAAATATAATAATTTTATATTTTTACAGTTACTATGAAA---ATATTCAATAGTAATTTATTCT-GACAGCTCTCAGAATTTCAAAGCT
i macFas5.chrUn_AQIA01076778   C 0 T 521
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186   8 +  11138919 I
e chlSab2.chrUn_KE147541v1     238315 180 -    811265 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  28794 180 -     38397 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I

a score=2548.000000
s hg38.chrX_KI270880v1_alt     256880 1 +    284869 A
s panTro5.chrX                 442026 1 + 155549662 A
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169640 1 -    177848 A
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335113 1 +    417917 A
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70937 1 + 141252148 A
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  28974 1 -     38397 a
i rheMac8.chrUn_NW_014831239v1 I 180 C 0
s macFas5.chrUn_AQIA01076778    27835 1 +     34961 a
i macFas5.chrUn_AQIA01076778   T 521 C 0
s chlSab2.chrUn_KE147541v1     238495 1 -    811265 a
i chlSab2.chrUn_KE147541v1     I 180 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186 8 +  11138919 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432217 199 +  25972781 I

a score=121804.000000
s hg38.chrX_KI270880v1_alt     256881 48 +    284869 ATATTTGACTTTTTAAAAAA--TTAAGTGCTA--AGTTTGTATAAAAATTTT
s panTro5.chrX                 442027 49 + 155549662 ATATTTGACTGTTTAAAAAA-ATTAAGTGCTA--AGTTTGTATAAAAATTTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169641 49 -    177848 ATATTTGACTTGTTAAAAAA-ATTAAGTGCTA--AGTTTGTATAAAAATTTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335114 47 +    417917 ATATTTGACTTTTTAAAAAA-ATTAAGTGCT----GTTTGTATAAAAATTTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70938 52 + 141252148 ATATTTGACTTTTAAAAAAAAATTAAGTGCTAAGAGTTTGTATAAAAAATTT
i nomLeu3.chrX                 C 0 I 679
s rheMac8.chrUn_NW_014831239v1  28975 51 -     38397 ataTTTGACTTTTTAAAAAA-ATTAAGTGCTGAGAGTTTGTATAAAAATTTT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27836 51 +     34961 ataTTTGACTTTTTAAAAAA-ATTAAGTGCTGAGAGTTTGTATAAAAATTTT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       432416 48 +  25972781 aTATTTGAC-TTTTAAAAAA-ATTAA-TGCTGAGAG-TTGTATAAAAATTTT
i macNem1.NW_012017243v1       I 199 C 0
s chlSab2.chrUn_KE147541v1     238496 51 -    811265 ataTTTGACTTTTTAAAAAA-ATTAAGTGCTGAGAGTCTGTATAAAAATTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186  8 +  11138919 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=23256.000000
s hg38.chrX_KI270880v1_alt     256929 7 +    284869 AATATGA
s panTro5.chrX                 442076 7 + 155549662 AATATGA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169690 7 -    177848 AATATGA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335161 7 +    417917 AATATGA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  71669 7 + 141252148 AATATGA
i nomLeu3.chrX                 I 679 C 0
s rheMac8.chrUn_NW_014831239v1  29026 7 -     38397 AATATGA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27887 7 +     34961 AATATGA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       432464 7 +  25972781 AATATGA
i macNem1.NW_012017243v1       C 0 I 1045
s chlSab2.chrUn_KE147541v1     238547 7 -    811265 AATATGA
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186 8 +  11138919 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=591197.000000
s hg38.chrX_KI270880v1_alt     256936 310 +    284869 CATAAAATTTTTATTTCTATAATTAATATAAAAATACTTATTGTATTTTTAATAAATAATTTTGAAAATATTAATTGTATTTTT----AATATTTTGAAAATATTACAAAAATATTTTAATTTTATAATATATTAACAAATATGTTAAATATATTTATAATTTTATAAATATATTATAATAAATATATTAAATATATTATAAATATAAATATATAATAAAATAAATATGTT-AAAATATAAAT-----ATATAACACATATATTAAAATATTAGAAAATATATTATAATTGTATTTTAAAGATTTTATATGTTTATAATT
s panTro5.chrX                 442083 310 + 155549662 CATAAAATTTTTATTTCTATAATTAATATAAAAATACTTATTGTATTTTTAATAAATAATTTTGAAAATATTAATTGTATTTTT----AATATTTTGAAAATACTACAAAAATATTTTAATTTTATAATATATTAACAAATATGTTAAATATATTTATAATTTTATAAATATATTATAATAAATATATTATATATATTATAAATATAAATATATAATAAAATAAATATGTT-AAAATATAAAT-----ATATAACACATATATTAAAATATTAGAAAATATATTATAATTGTATTTTAAAGAGTTTATATGTTTATAATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169697 301 -    177848 CATAAAATTTATATTTCTGTAATGAATATAAAAATATTTATTGTATTTTTAATAAATAATTTTGAAAATATGAATTGTATTTTT----AATATTTTGAAAATATTACAAAAATATTTTAATTTTATAATATATTAACAAATATGTTAAATATATTTATAATTTTATAAATATATTATAATAAATATATTAAATATATTATAAATATAAATATATAATA----TAATATGTTAAAAATATAAAT-----ATATAACACATATATTAAAATATTAGAAA--ATATCATATTTGTATTTTAAATATTT----TGTTTATAATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335168 304 +    417917 CATAAAGTTTATATTTCTATAATTAATATAAAAATATTTATTGTATTTTTAATAAATAATTTTGAAAATATTAATTGTATTTTT----AATATTTTGAAAATATTACAAAAATATTTTAATTTTATAATATGTTAACAAATATGTTAAATATAGTTATAATTTTATAAATATATTAAAATAAATATATTAAATATAT------TATAAATATATAATATAATAAATATGTT-ACAATATAAAT-----ATATAACACATATATTAAAATATTAGAAAATATATTATAATTGTATTTTAAATATTTTATATGTTTATAATT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  71676 275 + 141252148 CATAAAATTTATATTTCTATAATTAATATAAAAATATTTATTGTATTTTTAATA----------------------------------AATGTTTTGAAAATGTTAC--AAATATTTTAATTTTATAATATATTAACAAACATATtaaatatatttataattttagaaatatatt---ataaatatattaaatatattataaatataaatataaaatataataaatatgtt-aaaatataAATATATGATATAACGCATATAATAAAATATTAGAAAATATATTATAATTA-----TAAATATTTTATATGTTTATAATT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  29033 313 -     38397 TGTAAAATTTATATTTCTATAATTAATATAAAAGCATTTGTTGTATAGTTAATAAAT-ATTTTGAAAACATTAATTGTATTTTTAATAAATATTTTGAAAATATTACAAAAATATTTTAATTTTATAATATGTTAACaaatatattaaatatatttatgattttataaatatattataataaatatattaaatacattataaatataaatatataatataataaaaatgttaaaaatataaatatatAATATAGTAC--ATTTTAAAATATTAGAAAATATATTATAATTACATTATAAATATTT----TGTTTATAATT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    27894 313 +     34961 TGTAAAATTTATATTTCTATAATTAATATAAAAACATTTGTCGTATAGTTAATAAAT-ATTTTGAAAACATTAATTGTATTTTTAATAAATATTTTGAAAATATTACAAAAATATTTTAATTTTATAATATGTTAACaaatatattaaatatatttatgattttataaatatattataataaatatattaaatacattataaatataaatatataatataataaaaatgttaaaaatataaatatatAATATAGTAC--ATTTTAAAATATTAGAAAATATATTATAATTACATTATAAATATTT----TGTTTATAATT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s chlSab2.chrUn_KE147541v1     238554 310 -    811265 CATAAAATTTATATTTCTATAATTAACATACAAATATTTGTTGTCTATTTAATAAAT-ATTTTGAAAACATTAATTGTATTTTTAATAAATATTTTGAAAATATTACAAAAATACTTTAATTTTATACTATGTTAACAAATATATTAAATATATTTATAATTTTATAAATATATTATAATAAATATATTAAATACTTTATAAATATAAAAATATAATATAATAAAAATGTTAAAAATATAAATATATAATATAGTACATATTTAAAAATATTAGAAAA-----TATAATTATATTATAAATATTT----TGTTTATAATT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186   8 +  11138919 I
e cerAty1.NW_012001098v1       301410 901 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=104515.000000
s hg38.chrX_KI270880v1_alt     257246 56 +    284869 AATATATAAAATATTTATTAAAATAATTTATTATAATTATTTAATTTTAATAATTT
s panTro5.chrX                 442393 56 + 155549662 AATATATAAAATATTTATTAAAATAATTTATTATAATTATTTAATTTTAATAATTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 169998 56 -    177848 AATGTATAAAATATTTATTAAAATAATTTATTATAATTATTTAATTTTAATAATTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335472 53 +    417917 AATATATAGAATATTTATTAAAATAATTTATTATAATTAtttaattt---taattt
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  71951 56 + 141252148 AATATATAAAATATTCATTGAAATAATTTCTTATAATTATTTAATTTTAATAATAT
i nomLeu3.chrX                 C 0 T 1177
s rheMac8.chrUn_NW_014831239v1  29346 49 -     38397 AGTATATAAAA-ATTTATTAAAAT-ATTTATGATAATTAT---TTTTTAATAAT--
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28207 49 +     34961 AGTATATAAAA-ATTTATTAAAAT-ATTTATGATAATTAT---TTTTTAATAAT--
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       302311 50 -   1025902 AATATATAAAATATTTATTAAAATAATTTATAATTATT-T---ATTTTAATAAT--
i cerAty1.NW_012001098v1       I 901 C 0
s chlSab2.chrUn_KE147541v1     238864 49 -    811265 AGTGTATAAAATATTTATTAAAATAATTTATGATAAT--T---ATTTTAATAAT--
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186  8 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=81881.000000
s hg38.chrX_KI270880v1_alt     257302 31 +    284869 AAAATTAAATTTATTATATTAAATATAATAA
s panTro5.chrX                 442449 31 + 155549662 AAATTTAAATTTATTATATTAAATATAATAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170054 31 -    177848 AAATTTAAATTTATTATATTAAATATAATAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335525 31 +    417917 taattttaatttATTATATTAAATGTAATAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  70830 31 + 141252148 AAATTTATATTTATTATATTAAATGTAATAA
i nomLeu3.chrX                 T 1177 I 1146
s rheMac8.chrUn_NW_014831239v1  29395 27 -     38397 ----TTAAATTTATTATATTAAATATAATAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28256 27 +     34961 ----TTAAATTTATTATATTAAATATAATAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       302361 27 -   1025902 ----TTAAATTTATTATATTAAATACAATAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238913 27 -    811265 ----TTAAATTTATTATATTAAATATAATAA
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186  8 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=131603.000000
s hg38.chrX_KI270880v1_alt     257333 50 +    284869 TTTTATATTTTTACAATTAATATGAAAATATTTATTAAGTAATAATTTAT
s panTro5.chrX                 442480 50 + 155549662 TTTTATATTTTTACAATTAATATGAAAATATTTATTAAGTAATAATTTAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170085 50 -    177848 TTTTATATTTTTACAGTTAATATGAAAATATTTATTAAGTAATAATTTAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335556 50 +    417917 TTTTATATTTTTACAATTAATATGAAAATATTTATTAAGTAATAATTTAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72007 50 + 141252148 TTTCATATTTTTAAAATTAATAATAAAATATTTATTAAGTAATAATTTAT
i nomLeu3.chrX                 I 1146 C 0
s rheMac8.chrUn_NW_014831239v1  29422 46 -     38397 TTTTATATTTTTACAGTTACTATGAAAA----TATTCAATAGTAATTTAT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28283 46 +     34961 TTTTATATTTTTACAGTTACTATGAAAA----TATTCAATAGTAATTTAT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       302388 50 -   1025902 TTTTATATTTTTACAGTTAATATGAAAATATTTATTCAATAGTAATTTAT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238940 50 -    811265 TTTTATATTTTTACAGTTAATATGAAAATATTTATTCAATAGTAATTTAT
i chlSab2.chrUn_KE147541v1     C 0 C 0
e canFam3.chrX                 378241 319 + 123869142 I
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e otoGar3.GL873584             333186  8 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=396863.000000
s hg38.chrX_KI270880v1_alt     257383 130 +    284869 TCTGACAGCTCTCAGAATTTCAAAGCTAATACTTGACTTGTTTCTTTAAAAAAACTAAACTATTTG-----------ACTTGCTTCTTAAAAGAAAAA-CAAGCACTAAGAGTTTGTAT-AAAAAATCTTAATATGACATAAA
s panTro5.chrX                 442530 127 + 155549662 TCTGACAGCTCTCAGAATTTCAAAGCTAATACTTGACTTGTTTCTTTAAAAAAACTAACATATTTG-----------ACTTGCTTCTTAAAAAAAAAA----GCACTAAGAGTTTGTAT-AAAAAATCTTAATATGACATAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170135 127 -    177848 TCTGACAGCTCTCAGAATTTCAAAGCTAATACTTGACTTGTTTCTTTAAAAAAACTAAAATATTTG-----------ACTTGCTTCTTAAAAAAAAAA----GCACTAAGAGTTTGTAT-AAAAAATCTTAATATGACATAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335606 130 +    417917 TCTGACAGCTCTCAGAATTTCAAAGCTAATACTTGACTTGCTTCTTAAAAAAAACTAAAATATTTG-----------ACTTGCTTCTTAAAAAAAAAA-CAAGCACTAAGAGTTTGTAT-AAAAAATCTTAATATGACATAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72057 127 + 141252148 TCTGACAGCTCTCAGAATTTCAAAGCTAATACTTGACTTGCTTCTTAAAAAA----AAAATATTCG-----------ACTTGCTTCTTAAAAAAAAAAACGAGCACTAACAGTTTGTAT-AAAAAATCTTAATATGGCATAAA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  29468 129 -     38397 TCTGACAGCTCTCAGAATTTCAAAGCTAGTATTTGACTTGCTTCTTAAACAAAAACCAAATATTTG-----------ATTTGCTTCTTCACAAAACAC--AAGTAGTAAGAGTTTGTAT-CAAAAATCTTAACATGACACAAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28329 129 +     34961 TCTGACAGCTCTCAGAATTTCAAAGCTAGTATTTGACTTGCTTCTTAAACAAAAACCAAATATTTG-----------ATTTGCTTCTTCACAAAACAC--AAGTAGTAAGAGTTTGTAT-CAAAAATCTTAACATGACACAAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       302438 129 -   1025902 TCTGACAGCTCTCAGAATTTCAAAGCTAATATTTGACTTGCTTCTTAAACAAAAACCAAATATTTG-----------ATTTGCTTCTTCACAAAACAC--AAGTACTAAGAGTTTGTAT-CAAAAATCTTAACATGACATAAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     238990 129 -    811265 TCTGACGACTCTCAGAATTTCAAAGCTAATATTTGACTTGCTTCTTAAACAAAAACCAAATATTTG-----------ACTTGCTTCTTCACAAAATAC--AAGTACTAACAGTTTGTAT-GAAAAATCTTCACATGACATAAA
i chlSab2.chrUn_KE147541v1     C 0 I 35
s otoGar3.GL873584             333194  92 +  11138919 TCTGACAGCTTCCAGAATTGCAAAGCTAATATTTGACTTTTTTTTTTAACAA--------------------------------------------------GTGCTAAAAGTTACCAT-AAAAAATGTTAATATGATATAAA
i otoGar3.GL873584             I 8 C 0
s canFam3.chrX                 378560 134 + 123869142 TCTGACAGCTCTCACGATGTCAAAGCTAATATTTGACTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCCCCCAA---------GTGCTCAAAGTCAGTACGGAAAAATTTTAATATGACATAAA
i canFam3.chrX                 I 319 C 0
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=475664.000000
s hg38.chrX_KI270880v1_alt     257513 193 +    284869 -AATGAATGCCAGAGAGTCCATACATCAGAATTCCAGATAAGC-----TCTTTTTTT----------------GGCATGTGGGATTTTTATTCATAA------------ATTTGTTT----------AACTCTTTATACACC-------TCATCATACGT-TTTCGTG-TTGAGGATTTCCTTTGACGTTCTCATTGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGCTGTCATGCATGAGCCC
s panTro5.chrX                 442657 193 + 155549662 -AATGAATGCCAGAGAGTGAATACATCAGAGGTGAGGATAAGC-----TCTTTTTTT----------------GGAATGTGGGATTTTTATTCATAG------------TTTTTTTT----------AACTCCTTATACATC-------TCTTCATACGT-TTTCGTG-TTGAGGATTTCCTTTGACGTTCTCATTGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGCTGTCATGGATGAGCCC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170262 194 -    177848 -AATGAATGCCAGAGAGTGAATACATCAGAGGTGAGGATAAGC-----TCTTTTTTT----------------GGAATGTGGGATTTTTATTCATAGA-----------TTTTTTTT----------AACTCCTTATACATC-------TCTTCATACGT-TTTCGTG-TGGAGGATTTCCTTTGACGTTCTCATTGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGCTGTCATGGATGAGCCC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335736 194 +    417917 -AATGAATGCCAGAGAGTCAATACATCAGAAGTCCGGATAAGC-----TCTGTTTTT----------------GGCATGTGGGATTTTTATTCATAGA-----------TTTTTTTT----------AACTCTTTATACATC-------TCATCATACGT-TTTCGTG-TTGAGGATTTCCTTTGACGTTCTTATTGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGCTGTCATGCATGAGCCC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72184 159 + 141252148 -AATGAATGCCAGAGAG--------TCAGGAGTTGGGATAAGC-----TCTTTTTTT----------------GGCATGTGAGATTTTTATTAATAGAT----------TTTTGTTT----------AACTCTTTATACACC-------TCATCATCCAT-TTTCGTGTTTGAGGATTTCCTTTGACG-----------------------------TCCCATTTGGGGCTGTCATGGATGAGCCG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  29597 202 -     38397 -AATGAAAGCCAGAGAGTTAATACATCAGGAGTCCGGATAAGC-----TTTTTTTTT---------------GGGCGTGTGGGATTTTTATTCATAGAT----------TTTTTTTT-----AAAAAAACTCTTTATACATC-------TCATCGTACAT-TTTCGTGCTTGAGGATTTCCTTTGACGTTCTCGTCGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGTTGTCGTGGATGAACCG
i rheMac8.chrUn_NW_014831239v1 C 0 I 1223
s macFas5.chrUn_AQIA01076778    28458 201 +     34961 -AATGAAAGCCAGAGAGTTAATACATCAGGAGTCCGGATAAGC-----TTTTTTTTT---------------GGGCGTGTGGGATTTTTATTCATAGAT----------TTTTTTGT------AAAAAACTCTTTATACATC-------TCATCGTACAT-TTTCGTGCTTGAGGATTTCCTTTGACGTTCTCGTCGGCTGTTGGAGCAAGATAAGATCCCATTTGGGGTTGTCGTGGATGAACCG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       302567 205 -   1025902 -AATGAAAGCCAGAGAGTTAATACATCAGGAGTCCGGATAAGCTTTTTTTTTTTTTT---------------GGGCGTGTGGGATTTTTATTCATAGAT-----------------TAAAAAAAAAAAACTCTTTATACATC-------TCATCGTACAT-TTTCGTGCTTGAGGATTTCCTTTGACGTTCTCGTCGGCTGTTGGAGCAAGATAAGATCCCGTTTGGGGCTGTCGTGGATGAACCG
i cerAty1.NW_012001098v1       C 0 C 0
s otoGar3.GL873584             333286 223 +  11138919 -AATGAATGTCAGAAACTCAATACTTTAGGATTCAGGGTAAGC-----tctttttcttttttttttcttttttgtcctgtgggatttttattaatagattctttttttttttttttt----------tACTCTAAATACATC-------TCATCATGAATCTTTCGTGCTTGGGGAATTCTTTCGACTTTCTCATCGGCTTTTGGAGCAAGATAAGATCTAATTTGGGGCTGTCAGGGATGTGTTG
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 378694 219 + 123869142 AAACGAATGTCAGAGATTTAATACTTTAAGAGTGAGGG-AAGC-----TTTCTCTCT-----CTCTCTCTTTTAGCCCGTGGGATTTTTATGAATACATTTTTT-----TTTTTTTT----------GCCTCGCTACCCATTTCTGGTGTCTTCGTGAAT-CCTGGTGGGTGGGGAGCTCCCTTGCGTTGCTCGTCGGTGTGGTGTGTAAGATGAGAGCCGATGTGGGGCTGCCGCAGATGCGCTG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       432471 1045 +  25972781 I

a score=100850.000000
s hg38.chrX_KI270880v1_alt     257706 27 +    284869 CTTTGCTGAGGATGTGCAGAATGGGGT
s panTro5.chrX                 442850 27 + 155549662 CTTTGCTGAGGATGTGCAGAATGGGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170456 27 -    177848 CTTTGCTGAGGATGTGCAGAATGGGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335930 27 +    417917 CTTTGCTGAGGATGTGCAGAATGGGGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72343 27 + 141252148 CTTTGCTGAGGATGTGCAGAATGGGGT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31022 27 -     38397 CTTTGCTGAGGATTTGCAGAACGGGGG
i rheMac8.chrUn_NW_014831239v1 I 1223 C 0
s macFas5.chrUn_AQIA01076778    28659 27 +     34961 CTTCGCTGAGGATTTGCAAAATGGGAT
i macFas5.chrUn_AQIA01076778   C 0 I 190
s macNem1.NW_012017243v1       433516 27 +  25972781 CTTTGCTGAGGATTTGCAGAACGGGGG
i macNem1.NW_012017243v1       I 1045 C 0
s cerAty1.NW_012001098v1       302772 27 -   1025902 CTTTGCTGAGGATTTGCAAAATGGGGT
i cerAty1.NW_012001098v1       C 0 I 267
s otoGar3.GL873584             333509 27 +  11138919 CTCGGCTGGGGATCTTTGGCATGGGGT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 378913 27 + 123869142 GTCCGCTGGGGATGCTCAGGTTGGGAT
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=40265.000000
s hg38.chrX_KI270880v1_alt     257733 8 +    284869 GTCTGAGG
s panTro5.chrX                 442877 8 + 155549662 GTCTGAGG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170483 8 -    177848 GTCTGAGG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335957 8 +    417917 GTCTGAGG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72370 8 + 141252148 GTCTGAGG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31049 8 -     38397 GTCTGAGG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28876 8 +     34961 GTCTGAGG
i macFas5.chrUn_AQIA01076778   I 190 C 0
s macNem1.NW_012017243v1       433543 8 +  25972781 GTCTGAGG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303066 8 -   1025902 GTCTGAGG
i cerAty1.NW_012001098v1       I 267 C 0
s otoGar3.GL873584             333536 8 +  11138919 GTCTGAGG
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 378940 8 + 123869142 GTGTGAGG
i canFam3.chrX                 C 0 C 0
e manLeu1.NW_012108508v1       278421 1402 -    350446 M
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=797995.000000
s hg38.chrX_KI270880v1_alt     257741 180 +    284869 TCTACCTGCGTGGAACCAGGTGCACCTGCGGATCTTGCTAACACGCGCGGGAATTTTGCACGTTCACCAACAGGCA-AATGAATCCTCG--CGTCTTTAAGGGTCTGCGG----------CAGTTAATAGATGATCCACCGTGTCATGTCACAGCCCAGATGAGTGACAAGCCAGTGCCGACAGAGAGTGACA
s panTro5.chrX                 442885 180 + 155549662 TCTACCTGCGTGGAACCAGGTGCACCTGCGGATCTTGCTGACACGCGCGGGAATTTTGCACGTTCACCAACAGGCA-AATGAATCCCCG--CGTCTTTAAGGGTCTGCTG----------CAGTTAATAGATGATCCACCGTGTCATGTCACAGCCCAGATGAGTGACAAGCCAGTGCTGACAGAGAGTGACA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170491 180 -    177848 TCTACCTGCGTGGAACCAGGTGCACCTGCGGATCTTGCTGACACGCGCGGGAATTTTGCACGTTCACCAACAGGCA-AATGAATCCCCG--CGTCTTTAAGGGTCTGCTG----------CAGTTAATAGATGATCCACCGTGTCATGTCACAGCCCAGATGAGTGACAAGCCAGTGCTGACAGAGAGTGACA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       335965 180 +    417917 TCTACCTGCGTGGAACCAGGTGCACCTGCGGATCTTGCTGACACGCGCGGGAATTTTGCACGTTCACCAACAGGCA-AACGAATCCCCG--TGTCTTTAAGGGTCTGCTG----------CAGTTAATAGATGATCCACTGTGTCATGTCACAGCCCAGATGAGTGACAAGCCAGTGCTGACAGAGAGTGACA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72378 180 + 141252148 TCTACCTGCGTGGAACCAGGTGCACCTGCGGATCTTGCTGGCACGCGCGGGAATTTTGCATGTTCACCAACAGGCA-AATGAATCCCTG--TGTCTTTAAGGGTCTGCTG----------CAGTTAATAGATGATCCACCGTGTCATGTCACGGCCCAGATGAGTGACAAGCCAGTGCCGACAGAGAGTGAGA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31057 180 -     38397 TCTACCTCCGTGGAAGCTGGTGCACCTGCGGACCTCGCCGACACGCGTGGGAGTTTAGCACGTTCACCAACAGGCA-AATGAATCCGTG--TGTCTTTACGAGTCTTCTG----------CAGTTATCAGACGATCCACCGCGTCCTGTCACAGCCCAGATGAGTGACAAGCCGGTACTGACAGAGAGTGAAA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    28884 180 +     34961 TCTACCTCCGTGGAAGCTGGTGCACCTGCGGACCTCGCCGACACGCGTGGGAGTTTAGCACGTTCACCAACAGGCA-AATGAATCCGTG--TGTCTTTACGAGTCTTCTG----------CAGTTATCAGACGATCCACCGCGTCCTGTCACAGCCCAGATGAGTGACAAGCCGGTACTGACAGAGAGTGAAA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       433551 180 +  25972781 TCTACCTCCGTGGAAGCTGGTGCCCCTGCGGACCTCGCCGACACGCGTGGGAGTTTAGCACGTTCACCAACAGGCA-AATGAATCCGTG--TGTCTTTACGAGTCTTCTG----------CAGTTAACAGACGATCCACCGCGTCCTGTCACAGCCCAGATGAGTGACAAGCCGGTACTGACAGAGAGTGAAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303074 182 -   1025902 TCTACCTCCGTGGAAGCAGGTGCACCTGCGGACCTCGCCGACACGCGTGGGAGTTTGGCACGTTCACCAACAGGCA-AATGAATCCGTGTATGTCTTTATGAGCCTTCTG----------CAGTTAACAGATGATCCACCGCGTCCTGTCACAGCCCAGATGAGTGACAAGCCGGTACCCACGGAGAGTGAGA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       279878 182 -    350446 TCTACCTCCATGGAAGCAGGTGCACCTGCGGACCTCGCCCACACGCGTGGGAGTTTAGCACGTTCACCAACAGGCA-AATGAATCCGTGTATGTCTTTACGAGTTTTCTG----------CAGTTAACAGATGATCCACCGCGTCCTGTCACAGCCCAGATGAGTGACAAGCCGGTACCGACGGAGACTGAGA
i manLeu1.NW_012108508v1       M 1402 C 0
s otoGar3.GL873584             333544 191 +  11138919 TCTACCTGAGCAGAATGAGTTACACCTGTGGGTTCTGCTGACATGAACGGGGATTATGCGTGTTCACCACCGGGAAGGATGAATCCAGG--GTCTCTTCAGGCTCCATTGGCAATGTGCACACTTAATCAGTCATCTGCCATGTCATATCCCAGCCCAGGTGAGTGACAAGCCAGGGCTGACAGAGAGTGAGA
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 378948 190 + 123869142 TCCACCTGCACAGAGCACGGCGCACCTGTGGATCCTGGGAACATGAATGGGAATTATGCATGTTCTCCAACCGGGG-GATAAATCCCGC--TGTCTTTAAGGGTCTGCTGGCAACATGCACCCTTCATCGACGAGCTGCCATGTCATGTCACAGCCAGGGTGAGTGATGTGCAGGTGCCAAAGGAGCGGGAAA
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             267125 1208 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=1457576.000000
s hg38.chrX_KI270880v1_alt     257921 334 +    284869 TGTGTCTGTCACTTTGCTGACAGCCCTGGCACATTCTGCAAAATGCCTCAGCTCCTGCTGCCTAATTTTCTGCTGTGAGAGCCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTCTCAGAAATCTTTCCCCAAAGCACAGGCTTCATACATTCATGGGGTCTCACCATGTTGGGAGAACGGTGGCAGAATCAGAAAGGTGAC---GGGGGCTAGCTGGGAACACC-----------TGTGTGCGGATTCTTCAGAATCTGTAACAGCCTGGTTTGCAGACTCAAGGGGACTGTGGGCACTGGGAGATTCCTGAAGGCAGGT---GGGTGG-TT--GGAAGGATGTG-AA
s panTro5.chrX                 443065 334 + 155549662 TGTGTCTGTCACTTTGCTGACAGCCCTGGCACATTCTGCAAAATGCCTCAGCTCCTGCTGCCTAATTTTCTGTTGTGAGAGCCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTCTCAGAAATCTTTCCCCAAAGCACAGGCTTCATACATTCATGGGGTCTCACCAGGTTGGGAGAACGGTGGCAGAATCAGAAAGGTGAT---GGGGGCTAGCTGGGAACACC-----------TGTGTGCAGATTCTTCAGAATCTGTAACAGCCTGGTTTGCAAACTCAAGGGGACTGTGGGCGCTGGGAGATTCCTGAAGGCAGGT---GGGTGG-TC--GGAAGGATGTG-AA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 170671 334 -    177848 TGTGTCTGTCACTTTGCTGACAGCCCTGGCACATTCTGCAAAATGCCTCAGCTCCTGCTGCCTAATTTTCTGTTGTGAGAGCCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTCTCAGAAATCTTTCCCCAAAGCACAGGCTTCATACATTCATGGGGTCTCACCAGGTTGGGAGAACGGTGGCAGAATCAGAAAGGTGAC---GGGGGCTAGCTGGGAACACC-----------TGTGTGCGGATTCTTCAGAATCTGTAACAGCCCGGTTTGCAGACTCAAGGCGACTGTGGGCGCTGGGAGATTCCTGAAGGCAGGT---GGGTGG-TC--GGAAGGATGTG-AA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       336145 335 +    417917 TGTGTCTGTCACTTTGCTGACAGCCCTGGCACATTCTGCAAAATGCCTCAGCTCCTGCTGCCTAATTTTCTGCTGTGAGAGCCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTCTCAGAAATCTTTCCCCAAAGCACAGGCTTCATACATTCATGGGGTCTCACCATGTTGGGAGAACGGTGGCAGAATCAGAAAGGTGAC---GGGGGCTAGCTGGGAACACC-----------TGTGTGCGGATTCTTCAGAATCTGTAACAGCCTGGTTTGCAAACTCAAGGGGACTGTGGGCGCTGGGAGATTCCTGAAGGCAGGT---GGGTGG-TT--GGAAGGATGTGAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72558 334 + 141252148 TGTGTCTGTCACTTTGCTGACAGCCCTGGCACATTCTGCAAAATGCCTCAGCTCCTGCTGCCTAATTTTCTGCTGTGAGAGCCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTCTCGGAAATCTTTCCCCAAAGCACAGGCTTCATACATTCATGGGGTCTCACCTTGTTGGGAGAACGGTGGCAGAATCAGAAAGGTGAT---GGGGGCTAGGTGGGAACACC-----------TGTGTGCGGATTCTTCAGCATCTGTAACAGCCTGGTTTGCAAACTCAAGGGAACTGTGGGCGCTGGGAGATTCCTGAAGGCAGGT---GGGTGG-TC--GGAAGGATGTG-AA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31237 313 -     38397 CGTGTCTGTTACTTCGCTGACAGCCCCGGCACCTTCTGCAAAATGCCTCATTTCCTGCTGCCTCATTTTCCGCTGTGAGAGTCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATG--------------------------------ATACATTCACAGGGTCTTCCCACGCTGGGAGAACGGTGGCAGAACCCGAAAGGTGAC---CTGGGCTAGCTGGGAGCACCTGGGTAACGCTTGTGTGCGAATTCTTCAGCATCCGTGACAGCCTGGTTTGCAAACTCAAGGGAACTGGGGGCGCTGGGAGATTCCTGAAGGCAAGT---GTGTGG-TC--GGAAGGGTGTG-AA
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    29064 313 +     34961 CGTGTCTGTTACTTCGCTGACAGCCCCGGCACCTTCTGCAAAATGCCTCATTTCCTGCTGCCTCGTTTTCCGCTGTGAGAGTCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATG--------------------------------ATACATTCACAGGGTCTTCCCACGCTGGGAGAACGGTGGCAGAACCCGAAAGGTGAC---CTGGGCTACCTGGGAGCACCTGGGTAACGCTTGTGTGCGAATTCTTCAGCATCCGTGACAGCCTGGTTTGCAAACTCAAGGGAACTGGGGGCGCTGGGAGATTCCTGAAGGCAGGT---GTGTGG-TC--GGAAGGGTGTG-AA
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       433731 313 +  25972781 CGTGTCTGTTACTTCGCTGACAGCCCCGGCACCTTCTGCAAAATGCCTCATTTCCTGCTGCCTCGTTTTCCGCTGTGAGAGTCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATG--------------------------------ATACATTCATGGGGTCTTCCCACGCTGGGAGAACGGTGGCAGAACCCGAAAGGTGAC---CTGGGCTAGCTGGGAGCACCTGGGTAACGCTTGTGTGCGAATTCTTCAGCATCCGTGACAGCCTGGTTTGCCAACTCAAGGGAACTGGGGGCGCTGGGAGATTCCTGAAGGCAGGT---GTGTGG-TC--GGAAGGGTGTG-AA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303256 345 -   1025902 TGTGTCTGTTACTTCGCTGACAGCCCCGGCACCTTCTGCAAAATGCCTCATTTCCTGCTGCCTCCTTTTCCGCTGTGAGAGTCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTGTGGAAAATCTTTCCCCAAAGCACAGGCTTAATACATTCATGGGGTCTTCCCACGCTGGGAGAACGGTGGCAGAATCCGAAAGGTGAG---CTGGGCTAGCTGGGAGCACTTGGGTAACGCTTGTGTGCGAATTCTTCAGCATCCGTAACAGCCTGGTTTGCAAACTCAAGGGAACTGGGGGCGCTGGGAGATTCCTGAAGGCAGGT---GTGTGC-TC--GGAAGGGTGTG-AA
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       280060 345 -    350446 TGTGTCTGTTACTCCGCTGACAGCCCCGGCACCTTCTGCAAAATGCCTCATTTCCTGCTGCCTCCTTTTCCGCTGTGAGAGTCAGGTGGCTTCCTTTGGTCTCCACAGGAAACAAAATGTGTGGAAAATCTTTCCCCAAAGCACAGGCTTAATACATTCACGGGGTCTTCCCACGCTGGGAGAACGGTGGCAAAATCCGAAAGGTGAG---CTGGGCTAGCTGGGAGCACTTGGGTAACGCTTGTGTGCGAATTCTTCAGCATCCGTAACAGCCTGGTTTGCAAACTCGAGGGAACTGGGGGCGCTGGGAGATTCCCGAAGGCAGGT---GTGTGG-TC--GGAAGGGTGTG-AA
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             268333 333 +    465904 tgtgcgtgtCGCCTTGCTGACAGCCCCCGAGCAGTCTCCAGAATGCCTCAGCTCCGACTCCGTGATTTTCTGCCGTGAAGACCCGGTGGCTTCCTTTGGTCTCCACGGGCATCAACACGACTGGGAACTGTTTCCCCGGAGCAGAGACTGGATAGTTTCCGTGGGTCCCACCTCGGTGGACGCGCCGTGG-GGGGTCAGAGAGGTGAT---GCGGGTCAG-TGGGAACAGG-----------TG-GTGTGGATTCTTCAGACTCTGTATC-TTCTGCTTTGCAAAGTCAAGGGAAGGGTGGGAGCTAAGACGTTCCTGGAGGCGCGTGCCGGGTGG-GC--GGAGGGATGGA-AA
i saiBol1.JH378345             I 1208 I 316
s otoGar3.GL873584             333735 312 +  11138919 TGTGTCTGTCATCTGGCTGACACTCCTGCTGCGTTCTGCAAAATACCTCAGCTCCCAGTGCACGATGTTCCTCCAGGAGACCAGGTTGGCTCCCTTTGGTCTACCTAGGAAACAAAACGTATGGGAAATCTTTTCCCAAAGCAGACACTTAATAGCTT----GGGCCCTGCCGTGTTGTGAGAATTGCCACAGAATCAGAGAAATAAC---AAGAGCCAGCTGGGAACATT-----------TCTGAATTGATTGTATGGAAGCCCCAACAGCTTG------------AAAGGAGCT-------CTGGGATATTCTCAGAGGCAGGT---GAATGGACC--AGCAGGATGTG-AG
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 379138 293 + 123869142 GGTGCCTGTCACTTCCCTGACAGCCC--------------ACATGCCTCC-------CCGCACGATGTTCCTCTGTGGGAACCCGGTGGCTCCCTTTGGTCTGAACAGGGAGCTCAACGTGTGGGAAATGTG-------------------ATGTGCT----GGGTCCCACTTTGTCGGCAGCACCATTGAAGAG-CTGGGATATGACACTGGGCGCCTACGGAGAACACC-----------TGC-TCCAAGTTTTCCGGGAGCTTCTGGAGCCTGTCTCTGAAGCCAGAGGTGCGCTGGGGCTTGGGGAGCCTCCTAGAGGCGGGT---GGGTGG-CCGTGGAAGGATGGG-AG
i canFam3.chrX                 C 0 C 0
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=552339.000000
s hg38.chrX_KI270880v1_alt     258255 164 +    284869 AAGATTCAGTTGGATCCCAGGGGTGGTGGGTCAA--AGGCATTTCCTGTGTTC--------ACAGC--TGGTTGCCACCGACGCCTGTTGCCACGGATGCCTGGTGTACAGGGCGTGGTTCTTTTCTCAGGTGAATACCCAACAGTCAAGTTATCCCAGTCCATCTGGATCACCTG
s panTro5.chrX                 443399 164 + 155549662 AAGACTCAGTTGGATCCCAGGGGTGGTGGGTCAA--AGGCATTTCCTGTGTTC--------ACAGC--TGGTTGCCACCGACGCCTGTTGCCACGGATGCCTGGTGTACAGGGCGTGGTTCTTTTCTCAGGGGAGTACCCAACAGCCAAGTTATCCCAGTCCATCTGGATCACCTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 171005 164 -    177848 AAGACTCAGTTGGATCCCAGGGGTGGTGGGTCAA--AGGCATTTCCTGTGTTC--------ACAGC--TGGTTGCCACCGACGCCTGTTGCCACGGATGCCTGGTGTACAGGGCGTGGTTCTTTTCTCAGGGGAGTACCCAACAGCCAAGTTATCCCAGTCCATCTGGATCACCTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       336480 164 +    417917 AAGACTCAGTTGGATCCCAGGGGTGGTGGGTCAA--AGGCATTTCCTGTGTTC--------ACAGC--TGGTTGCCACCGACGCCTGTTGCCACAGATGCCTGGTGTACAGGGCGTGGTTCTTTTCTCAGGTGAGTACCCAACAGCCAAGTTATCCCAGTCCATCTGGATCACCTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  72892 155 + 141252148 AAGACTCAGTTGGATCCCAGGGGTGGTGGGTGAA--AGGCAATTCCTGTGTTC--------ACAGC--TGGTTGCCACGGACGCCTGTTGCCACGGATGCCTGGTGTACAGGGCGTGGTTCTTTTCTCAGGTGAGTACCCAACAGCCAAGTTATCACAGTCCATCTG---------
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31550 122 -     38397 ACGACCCAGTT----------------------------CATTTCCTGTGTTC--------ACAGC--TG----------------GTTACCACAGATGCCTGGTGTACAGGGCGTGGCTCTTTTCTCAGGTGAGCACCCCACAGCCAAGTTATCCCAGTCCGTCTGGGTCACCTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    29377 122 +     34961 ACGACCCAGTT----------------------------CGTTTCCTGTGTTC--------ACAGC--TG----------------GTTACCACAGATGCCTGGTGTACAGGGCGTGGCTCTTTTCTCAGGTGAGCACCCCACAGCCAAGTTATCCCAGTCCGTCTGGGTCACCTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       434044 122 +  25972781 ACGACCCAGTT----------------------------CGTTTCCTGTGTTC--------GCAGC--TG----------------GTTACCACAGATGCCTGGTGTACAGGGGGTGGCTCTTTTCTCAGGTGAGCGCCCCACAGCCAAGTTATCCCAGTCCGTCCGGGTCATCTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303601 124 -   1025902 AGGACCCAGTT----------------------------CATTTCCTGTGTTC--------ACAGCTGTG----------------GCTGCCACAGATGCCTGCTGTACAGGGCGTGGCTCTTTTCTCAGGTGAGCACCCCACAGCCAAGTGATCCCAGTCCGTCTGGGTCACCTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       280405 122 -    350446 AGGACCCAGTT----------------------------CATTTCCTGTGTTC--------ACGGC--TG----------------GCTGCCACAGATGCCTGCTGTACAGGGCGTGGCTCTTTTCTCAGGTGAGCACCCCACAGCCAAGTGATCCCAGTCCGTCTGGGTCACCTG
i manLeu1.NW_012108508v1       C 0 C 0
s saiBol1.JH378345             268982 143 +    465904 AAGACCCACTTGGATCCCAGAGGCGGTGGGTCAA--AGGCATTTCCCGTCCAC--------ACACC--AC----------------ATGGCCACGGATGCCTGGTGTACAAGGCGTGG-----TTCTCAGGGGAGTTCCCCACAGCCCCATGACTCCATTCCGTCTGGGTCACCTG
i saiBol1.JH378345             I 316 I 743
s otoGar3.GL873584             334047 145 +  11138919 AAGACGCAGCTGGATCAAAGAGGCAGTGAGTCAG--TGGTGTTTTCTGTGCCC--------AGGGC--TG----------------GCTGCCACAGACACCTGCTATGGAAGGCGTGG---TCTTCTCAGGCATGCACCCAGCAGTCAAGCTATCCTGGTCCAACTGGGATATCTT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 379431 155 + 123869142 AGGGTCCAGCCGCATCCAAGAGGCAGTGAGTCAACGGGGCACCTCCCACTCTCTTCCCTTTGCAGC--TG----------------GTTGCCATGAAAACCAGGGACCCCAACCATGGCCGTCCTCTTCGGTGGG---ACAATGGCTCCAGGATCCCCACCCAGCCCGATCAACTG
i canFam3.chrX                 C 0 C 0
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=271988.000000
s hg38.chrX_KI270880v1_alt     258419 78 +    284869 CAAACAGATGC-----ACCATTCATGCCCC----ACCTCA--GGGCTTGTTC--TTTTCTTCAGCACACTCCTGGCTTACACCTGTGTGCT
s panTro5.chrX                 443563 78 + 155549662 CAAACAGATGC-----ACCATTCATGCCCC----ACCTCA--GGGCTTGTTC--TTTTCTTCAGCACACTCCTGGCTTATACCTGTGTGGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 171169 78 -    177848 CAAACAGATGC-----ACCATTCATGCCCC----ACCTCA--GGGCTTGTTC--TTTTCTTCAGCACACTCCTGGCTTATACCTGTGTGGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       336644 78 +    417917 CAAACAGATGC-----ACCATTCATGCCCC----ACCTCG--GGGTTTGTTC--TTTTCTTCAGCACACTCCTGGCTTATACCTGTGTGCT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  73047 65 + 141252148 -----AGATGC-----ACCATTCATGCCCC----ACCTCG--GGGCTTG----------TTCAGCACACTCCTGGCTTATACCTGTGTGCT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31672 79 -     38397 CAAACGGATGC-----ACCATTCAAGTTCC----ACCTTGG-GGGCTTGTTC--TTTTCTGCAGTGCACTCGTGGCTTATACCTGCGTGCT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    29499 79 +     34961 CAAACGGATAC-----ACCATTCACGTCCC----ACCTTGC-GGGCTTGTTC--TTTTCTGCAGCGCACTCGTGGCTTATACCTGCGTGCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       434166 79 +  25972781 CAAACGGATGC-----ACCATTCACGTCCC----ACCTTGG-GGGCTTGTTC--TTTTCTGCAGCGCACTCCTGGCTTATACCTGCGTGCT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303725 79 -   1025902 CACACAGACGC-----ATCATTCAAGTCCC----ACGTTGG-GGGCTTGTTC--TTTCCTGCGGCACACTCCTGGCTTGTACCTGTGTGCT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       280527 79 -    350446 CACACAGACGC-----ACCATTCAAGTCCC----ACCTTGG-GGGCTTGTTC--TTTCCTGCGGCACCCTCCTGGCTTATACCTGTGTGCT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             334192 84 +  11138919 CAAAGAGAAGC-----ACC--TCAGCCACCTGAAACTTCAGCTGGCTTCTTTCATTTTCTGAACTACATTCTGGTCTCAGACCTGTGTGCT
i otoGar3.GL873584             C 0 C 0
s canFam3.chrX                 379586 79 + 123869142 CAGGGAGAGGCTGCAGACCACTGAGCCCCA----GCCGCGT-GTGTCTGCTC-------CACAGCAGGTTCCTGGCTCACAGCCGTGTGCT
i canFam3.chrX                 C 0 I 529
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=375134.000000
s hg38.chrX_KI270880v1_alt     258497 141 +    284869 CAGATGCAGAGG-----TAAAGCATTTTAAGGACACCTCCAGGAATCTGTCCGGTGGCAATGACCCATTCGGGCCCAAGAAAGTGTAAGAGTGATGCCTTCTTGCTCTGCTCTCATCTGGAAGCGCCTCTCTCCCTTGCCATGGAG
s panTro5.chrX                 443641 141 + 155549662 CAGATGCAGAGG-----TAAAGCATTTTAAGGACACCTGCAGGAATCTGTCCGGTGGCAATGACCCATTCGGAGCCAAGAAAGTGCGAGAGTGATGCCTTCTTGCTCTGCTCTCATCTGGAAGCGCCTCTCTCCCTTGCCATGGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 171247 141 -    177848 CAGATGCAGAGG-----TAAAGCATTTTAAGGACACCTGCAGGAATCTGTCCGGTGGCAATGACCCATTCGGAGCCAAGAAAGTGCGAGAGTGATGCCTTCTTGCTCTGCTCTCATCTGGAAGCGCCTCTCTCCCTTGCCATGGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       336722 141 +    417917 CAGATGCAGAGG-----TAAAGCATTTTAAGGACACCTGCAGGAATCTGTCCGGTGGCAATGAACCATTCGGACCCAAGAAAGTGCAAGAGTGATGCCTTCTTGCTCTGCTCTCATCTGGAAGCGCCTCTCTCCCTTGCCATGGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  73112 141 + 141252148 CAGATGCAGAGG-----TAAAGCATTTTAAGGACACCTGCAGGAATCTGTCCGGTGGCAATGACCCATTCGGACCCAAGAAAGTGCAAGAGTGATGCCTTCTTGCTCTGCTCTCATCTGGAAGTGTCTCTCTCCCTTGCCATGGAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31751 101 -     38397 CAGATGCAGGGG-TAGATAGAGCATTTTGAGGACAACTGTGGCAATGTGTCCGGTGGCCATGACCCAGTCGGACCCAAGAAAG-----------TACCTTCTTGCTCTGCTGT---------------------------------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    29578 101 +     34961 CAGATGCAGGGG-TAGATAGAGCATTTTGAGGACAACTGTGGCAATGTGTCCGGTGGCCATGACCCAGTCGGACCCAAGAAAG-----------TACCTTCTTGCTCTGCTGT---------------------------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       434245 101 +  25972781 CGGATGCAGGGG-TAGATAGAGCATTTTGAGGACAACTGTGGCAATGTGTCCGGTGGCCATGACCCAGTCGGACCCAAGAAAG-----------TACCTTCTTGCTCTGCTGT---------------------------------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303804 130 -   1025902 CAGATGCAGGGG-----TAGAGCATTTTAAGGACAACTGCAGCAATGTGTCCGGTGGTCATGACCCAGTCGGACCCAAGAAAG-----------TGCCTTCTTGCTCTCCTGTCTTCTGGAAGTGCCTCTCTCCCTTGCCATGGAC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       280606 135 -    350446 CAGATGCAGGGGGTAGATACAGCATTTTAAGGACAACTGCAGCAATGTGTCCGGTGGCCATGACCCAGTCAGACCCAAGAAAG-----------TGCCTTCTTGCTCTCCTGTCTTCTGGAAGTGCCTGTCTCCCTTGCCATGGAC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             334276 125 +  11138919 CAGGAGTAAGGA----------CACTGTAGGAAT--CTGTTGCAAT-------GTGGCAAGGCTCCATTGAGACCCAAGAAGGTTGAAGAGTTGTGTCTCCTTTGTTTCCTAACATCTGGGAGT--TTCTCTCCTGCACCACAAAG
i otoGar3.GL873584             C 0 I 30
e canFam3.chrX                 379665 529 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=2785212.000000
s hg38.chrX_KI270880v1_alt     258638 816 +    284869 AGGCTGGCCATGTAATGCTCACTGTGGCTCTTTCAGATACATCATCTCCCCATTTTAAAGATGAAGAA---------------GAGTCAGTCTCATTCCTCAGCACCAGTAGTAACGGGGGGAGTTGGGCTGACTCCAAACCTGCTCCCAAAGATAGCACTAACAAATGCTGGTAAGG------------------------TGGTGGTCACAAAGAGTGTCATCAACTCCAGATAGCAACCGGGTCTCCTTACCAGAAAACCTAACAGGCGTTGGTTTGATAGATGCAT-CATTGTGTATGTC----tctatccatctatgcattctccatctatccatctatcatctctccatTCACCTACTCatctatcaatctatccattcatctatccattctttatatctatttctctatctatccatctatt------tatttatccatcatccgtctgtcatctatttatattctgtcatctctctttcaatcttccatctaccctatctatctactacctaaagctatctgtattctatctatccaaacatcatctgactatcatctacctacctacatctatcatctctctagc--------tctgtctatatatctatctatatcatctctatatcagtcatctattcc----tctatctattatctatctatctatc--------------------------------atctatcatct---atctaccatctatctatcaatacatctatgtatcaatcatctatctctcaatcagtacatctgtcaatgtatcaatcatctatctatatcagtacatctg--taagtatcaatcatctatcatgtatctatctatacatctgta-------------------------------------------tatctatctatctcagtacatctgtctacgtatcaatcatctGATT
s panTro5.chrX                 443782 805 + 155549662 ACGCTGGCcatgtaatgctcactgtgactctttcagatacgtcatctccccattttaaagat---gaa---------------gaGTCAGTCTCTTTCCTCAGCATCAGTAGTAACGGGGGGAGTTGGGCTGACTCCAAACCTGCTCCCAAAGATAGCACTAACAAATGCTGGTAAGG------------------------TGGTGGTCACAAAGAGTGTCATCAACTCCAAATAGCAACCAGGTCTCCTTACCAGAAAACCTAACAGGCGTTCGTTTGATAGATGCAT-CATTGTGTATGTC----tctatccatctatgcattctccatctatccatctatcatctCTCCGTTCACCTACTCatctatca----atccattcatctatccattctttatatctatttctctatctatccatctatt------tatttatccatcatccgtctgtcatctatttgtattctgtcatctctctttcaatcttctatctaccctatctatctactacctaaagctatctgtattctatctatccaaacatcatctgactgtcatctacctacctatatctatcatctctctagc--------tctgtctatatatctatctatatcatctctatatcaatcatctattcc----tctatctattatctatctatctatc--------------------------------atctatc-------atctaccatctatctatcaatacatctatgtatcaatcatctatctctcaatcagtacatctgtcaatgtatcaatcatctatctatatcagtacatctg--tatgtatcaatcatctatcatgtatctatctatacatctgta-------------------------------------------tatctatctatctcagtacatctgtctacgtatcaatcatctGATT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 171388 829 -    177848 ACGCTGGCCATGTAATGCTCACTGTGACTCTTTCAGATACGTCATCTCCCCATTTTAAAGAT---GAA---------------GAGTCAGTCTCTTTCCTCAGCACCAGTAGTAACGGGGGGAGTTGGGCTGACTCCAAACCTGCTCCCAAAGATAGCACTAACAAATGCTGGTAAGG------------------------TGGTGGTCACAAAGAGTGTCATCAACTCCAAATAGCAACCAGGTCTCCTTACCAGAAAACCTAACAGGCGTTGGTTTGATAGATGCAT-CATTGTGTATGTC----tctatccatctatgcattctccatctatccatctatcatctCTCCGTTCACCTACTCatctatcaatctatccattcatctatccattctttatatctatttctctatctatccatctatt------tatttatccatcatccgtctgtcatctatttgtattctgtcatctctctttcaatcttctatctaccctatctatctactacctaaagctatctgtattctatctatccaaacatcatctgactgtcatctacctacctatatctatcatctctctagc--------tctgtctatatatctatctatatcatctctatatcagtcatctattcc----tctatctattatctatctatctatc-------------------tatctatctatctatctatcatctatcatctaccatctatctatcaatacatctatgtatcaatcatctatctctcaatcagtacatctgtcaatgtatcaatcatctatctatatcagtacatctg--tatgtatcaatcatctatcatgtatctatctatacatctgta-------------------------------------------tatctatctatctcagtacatctgtctacgtatcaatcatctGATT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       336863 833 +    417917 AGGCTGGCCATGTAATGCTCACTGTGGCTCTTTCAGATACGTCATCTCCGCATTTTAAAGATGAAGAA---------------GAGTCAGTCTCATTCCTCAGCACCAGTAGTAACGGGGGGAGTTGGGCTGACTCCAAACCTGCTCCCAAAGATAGCACTAAAAAATGCTGGTAAGG------------------------TGGTGGTCACAAAGAGTGTCATCAACTCCAGATAGCAACCAGGTCTCCTTACTAGAAAACCTAACGGGCATTGGTTTGATAGATGCAT-CATTGTGtatgtc----tctatccacctatgcattctccatctatccatctatcatctctcggttcacctactcatctatcaatctatccattcatctatccattctttatatctatttctctatctatccatctatttatctctatttatccatcatccgtctgtcatctatttatagtctgtcatctctctttcaatcttctatctaccctatctatctactacctaaagctatctgtattctatctatccaaacatcatctgactgtcatctacctacctatatctatcatctctctagc--------tctgtctatatatctatctata-catctctataccagtcatctattcc----tctatctatctattatctatctatc--------------------------------atctatcatct---atctaccatctatctatcaatacatctatgtatcaatcatctatctctcaatcagtacatctgtcaatgtatcaatc----atctatatcagtacatctg--tatgtatcaatcatctatcatgtatctatctatacatctgta--------tatctgtctatctatc-------------------tatctacctatctcagtacatctgtctacttatcaatcatctGATT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  73253 892 + 141252148 AGGCTGGCCACGTCATGCTCAGCGTGGCTCTTTCAGATACGTCATCtccccatttcacagatgaagaaactgaggctGAAGACGAGTCAGTCTCATGCCTCAGCACC---AGTAATGGGGGGAGTTGGGCTGGCTCCAAACCTGTCCCCAAAGATAGCACTAACAAATGCTGGCAACG------------------------TGGTGGTCACAAAGAGTGTCATCAACTCCAGATAGCAACCAGGTCTCCTTACCAGAAAACCTAACAGGCATTGGTTTGATAGATGCAT-CACTGTGtatgtc----tccatccatctgtgcattctccatctatccatctatcatctctccattcacctattcatctagcaacctatccattcatctatccattctttatatctattcctctatctatccatctctttatctctatttatccatcatccatctatcatctatttatattctgtcatctctctctcaatcttctgtctatcctatctgtctactacctaaagctatctgtattctatctatccaaacatcatctgacg----------tacctacatctatcatctctctagc--------tctgtctatatatctatctatatcatctctatatcagtcatctattcc----tctatctattatctatctatctatctatctatcatctatctatctatctatctatctatctatcatct---atctaccatctatctatcaatacatctatgtatcaatcatctatctctcaatcagtacatctgtcaatgtatcaatcatctatctatatcagtacatctgtctatgtatcaatcatctatcatgtatctatctat-catctgtc--------tatctatctatctatctatctatctatctatctatcatctatctatctcagtacatctgtctacgtatcaatcatctGATT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  31852 869 -     38397 ------------------------gggctctttgagatgcgtcatctccccatttcacagatgaagagactgaggctgaagaagagtcagtctcattcctcag---cagtagtcacggggagagttgagctgactcccaacctgctcccaAAGATAGAACTAACAAATGCTGGCAACGTCATGGTCACAAATGCTGGCAATATCATGGTCACAAAGAGTGTCATCAACTCTGGATAGCAACCAGGTCTCCTGATCAGAAAACTTAACAGGTGTTGGTTTGATAGATACATCCATTCGGTGTGTCTCCGtctgtccacctatgcattctccatctatccatctatcatctctccatccatctattcatctgtcaatctatccgttcaccgatccattctttatatctgtctctctgtctatccatctatttatctccatttatccatcatccgtctatcatctatttatattctgtcatctctctctcaatcttctatctatcctatctg----ctacctaaagctatctgtcttctgtctatctaagtatcatctgactgtcatccacctacctatatctatcatctctctagttctctaggtctgtctatacatctatctatatcatctctatatcggtcatctattcctgtatctatctatcatctatctatctac----------------------------------tctatc---t---atctaccatctatctatcaatacatctatgtatcaatcatcta--tgtcaatcagtacatctgtcaaagtatcaatcatctaactatatcagtacatt----tacgtatcaatcatctatcatgtatctatctatctatctatt-----atctatctatctatctatctatctatctatc-------tatctatctatctcagtacatctgtctatgtatcaatcatctGACT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    29679 870 +     34961 -------------------------GGCTCTTTGAGATGCGtcatctccccatttcacagatgaagagactgaggctgaagaagagtcagtctcattcctcag---cagtagtcacggggagagttgagctgactcccaacctgctcccaAAGATAGAACTAACAAATGCTGGCAACGTCATGGTCACAAATGCTGGCAATATCATGGTCACAAAGAGTGTCATCAACTCCGGATAGCAACCAGGTCTCCTGATCAGAAAACCTAACAGGTGTTGGTTTGATAGATACATCCATTCGGTGTGTCTCCGtctgtccacctatgcattctccatctatccgtctatcatctctccatccatctattcatctgtcaatctatccgttcatctatccattctttatatctgtctctctgtctatccatctatttatctccatttatccatcatccgtctatcatctatttatattctgtcatctctctctcaatctgctatctatcctatctg----ctacctaaagctatctgtcttctgtctatctaagtatcatctgactgtcatccacctacctatatctatcatctctctagttctctaggtctgtctatatatctatctatatcatctctatatcggtcatctattcctgtatctatctatcatctatctatctatc--------------------------------atctatc---t---atctaccatctatctatcaatacatctatgtatcaatcatcta--tgtcaatcagtacatctgtcaaagtatcaatcatctaactatatcagtacatt----tacgtatcaatcatctatcatgtatctatctatctatctatc-----tatcatctatctatctatctatctatctatc-------tatctatctatctcagtacatctgtctatgtatcaatcatctGACT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       434346 855 +  25972781 -------------------------GGctctttgagatacgtcatctccccatttcacagatgaagagactgaggctgaagaagagtcagtctcattcctcag---cagtagtcacggggagagttgagctgactcccaacctgctcccaaagATAGAACTAACAAATGCTGGCAACGTCATGGTCACAAATGCTGGCAATATCATGGTCACAAAGAGTGTCATCAACTCCGGACAGCAACCAGGTCTCCTGATCAGAAAACCTAACAGGTGTTGGTTTGATAGATACATCCATTCGGTGTGTCTCCGtctgtccacctatgcattctccatctatccatctaccatctctccatccatctattcatctgtcaatctatccgttcatctatccattctttatatctgtctctctgtctatccatctatttatctccatttatccttcatccttctatcatctatttatattctgtcatctctctctcaatcttctatctatcctatctg----ctacctaaagctatctgtcttctgtctatctaagtatcatctgactgtcatccacctacctatatctatcatctctctagttctctaggtctgtctatatatctatctatatcatctctatatcggtcatctattcctgtatctatctatcatctatctatctatc--------------------------------atctatc---t---atctaccatctatctatcaatacatctatgtatcaatcatcta--tgtcaatcagtacatctgtcaaagtatcaatcatctaactatatcagtacatt----tacgtatcaatcatctatcatgtatctatct--------------------atctatctatctatctatctatctatc-------tatctatctatctcagtacatctgtctatgtatcaatcatctGACT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       303934 896 -   1025902 AGGCTGGCcacgtactgctcactgtggctctttgagatacgtcatctccccatttcacagatgaagagactgaggctgaggaagagtcagtCTCATTCCTCAG---CAGTAGTCACGGGGAGAGTTGAGCTGACTCCCAACCTGCTCCCAAAGATAGAACTAACAAATGCTGGCAACGTCATGGTCACAAATGCTGGCAATATCATGGTCACAAAGAGTGTCATCAACTCCGGATAGTAACCAGGTCTCCTGATCAGAAAACCTAACAGGTGTTGGTTTGATAGATGCATCCATTCTGTACGTCTCCGtctatccacctatgcattctccatgtatccatctatcatctctccgtccatctattcatctatccatctatccgttcatctatccattctttatatctgtctctctctctatccatctatttatctccatttatccatcatccgtctatcatctatttatattctgtcatctttctctcaatcttctatctatcctatctg----ctacctaaagctatctgtcttctatctatctaagtatcatctgactgtcatccacctacctatatctatcatctctctagttctctaggtctgtctatatatctatctatatcatctgtatatcagtcacctattcctgtatctacctatcacctatctatc------------------------------------atctatc---t---atctaccatctatctatcaatacatctatgtatcaatcatcta--tgtcaatcagtacatctgtcaaagtatcaatcatctaactatATCAGTACatc----tatgtatcaatcatctatcatgtatctatctatctatctgtctatctatctatctatctatctatctatctatctatc-------tatctatctaGCTGAGTACATCTGTCTATGTATCAATCATCTGACT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       280741 893 -    350446 AGGCTGGCCACGTACTGctcactgtggctctttgagatacgtcctctccccatttcacagatgaagagactgaggctgaagaagagtcagtCTCATTCCTCAGC--CAGTAGTCATGGGGAGAGTTGAGCTGACTCCCAACCTGCTCCCCAAGATAGAACTAACAAATGTTGGCAACGTCATGGTCACAAATGCTGGCAATATCATGGTCACAAAGAGTGTCATCAACTCCGGATAGCAACCAGGTCTCCTGATCAGAAAACCTAACAGGTGTTGGTTTGATAGATGCATCCATTCTGTACGTCTCCGtctatccacctatgcattctccatctacccatctatcatctctccgtccatctattcatctatccatctatccgttcatctatccgttctttatatctgtctctctgtctatccatctatttatctccatttatccatcatccgtttatcatctgtttatattctgtcatctctctctcaatcttctatctatcctatctg----ctacctaaagctatctgtcttctgtctatctaagtatcatctgactgtcatccacctacctatatctatcatctctctagttctctaggtctgtctatatatctatctatatcatctctatactggtcatctattcctgtatctatctatcatctatctatctatc--------------------------------atctctc---t---atctaccatctatctatcaatacatctgtgtatcaatcatcta--tgtcaatcagtacatctgtcaaagtatcaatcatctaactatatcagtacatc----tatgtatcaatcatctatcatgtatgtatgtatgtatgtatc--------tatctatctatctatctatctatctatg-------tatctatctagctcagtacatctgtctatgtatcaatcatctGACT
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 379665 529 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             334401  30 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=587835.000000
s hg38.chrX_KI270880v1_alt     259454 146 +    284869 GAAGAAAAGGCTCGGAGACGGAGTCTATGTCACCA----GCATAGGA--AAAGCAGGATGTGGCTTCCATTCCTTGAAACCTCTGTCTTCCTCCTGATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
s panTro5.chrX                 444587 146 + 155549662 GAAGAAAAGCCTCGGAGACGGAGTCGTTGTCACCA----GCATAGGA--AAAGCAGGATGTGGCTCCCATTCCTTGAAACCTCTGTCTTCCTCCTGATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172217 146 -    177848 GAAGAAAAGCCTCGGAGACAGAGTCGTTGTCACCA----GCATAGGA--AAAGCAGGATGTGGCTCCCATTCCTTGAAACCTCTGTCTTCCTCCTGATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       337696 146 +    417917 GAAGAAAAGGCTCGGAGACGGAGTCGATGTCACCA----GCACAGGA--AAAGCAGGATGTGGCTCCCATTCCTTGAAACCTCTGTCTTCCTCCTGATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTATG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74145 146 + 141252148 GAAGAAAGGGATCGGAGACGGAGTCGATGTCACCA----GCATAGGA--AAGGCAGGATGTGGCTCCTATTCCTTGAAACCTCTGTCTTCCTCCTGATTTATA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  32721 146 -     38397 GAAGAAAGGGCTTGGAGACGGAGTCGATGGCACCA----GCATAGGA--GAGGCAGGATGTGGGTCCCATTCCTTGAAACCTCTGTCTTCCTCCTAATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    30549 146 +     34961 GAAGAAAGGGCTTGGAGACGGAGTCGATGGCACCA----GCATAGGA--GAGGCAGGATGTGGGTCCCATTCCTTGAAACCTCTGTCTTCCTCCTAATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTGCTTGTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435201 146 +  25972781 GAAGAAAGGGCTTGGAGACGGAGTCGATGGCACCA----GCATAGGA--GAGGCAGGATGTGGGTCCCATTCCTTGAAACCTCTGTCTTCCTCCTAATTTACA---AGTCCTGTCTGAGATTCTCCTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       304830 146 -   1025902 GAAGAAAGGGCTTGGAGACGGAGTCGATGGCACCA----GCTTAGGA--CAGGCAGGATGTGGCTCCCATTCCTTGAAACCTCTGTCTTCCTCCTAATTTACA---AGTCCTGTCTGAGATTCTCTTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       281634 146 -    350446 GAAGAAAGGGCTTGGAGACGGAGTCGATGGCACCA----GCTTAGGA--CAGGCAGGATGTGGCTCCCATTCCTTGAAACCTCTGTCTTCCTCCTAATTTACA---AGTCCTGTCTGAGATTCTCTTCTG----GTGTTTATTTGCTGTTTTTCTTGTG
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 380194 152 + 123869142 GAAGGCAGGGCTCTGAGGTCGGGGCGAGGTCACCAGGATGCACAGGGCTGCGGCAGGAGGTCCTGCCCATC-----ATGGCCCTGGTTCCCGTCTGGGTCACAGTGGGCCCCACCTGACATTCCCGTCTGTGCTGGGGCTTCTTGCTGGTGCTGGTG--
i canFam3.chrX                 I 529 I 24
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             334401  30 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=50407.000000
s hg38.chrX_KI270880v1_alt     259600 16 +    284869 AAGCCAGATTTCCAAG
s panTro5.chrX                 444733 16 + 155549662 AATCCAGATTTCCAAA
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172363 16 -    177848 AATCCAGATTTCCAAA
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       337842 16 +    417917 AAGCCAGATTTCCAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74291 16 + 141252148 AAGCCAGATTTCCAAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  32867 16 -     38397 ATGCCAGATGTCCAAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    30695 16 +     34961 ATGCCAGATGTCCAAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435347 16 +  25972781 ATGCCAGATGTGCAAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       304976 16 -   1025902 ATGCCAGATGTCCAAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       281780 16 -    350446 ATGCCAGATGTCCAAG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380346 24 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             334401 30 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=275764.000000
s hg38.chrX_KI270880v1_alt     259616 60 +    284869 CATATTTTCACATTGGTTTTGAAGGTCCTGATGGAAAACATGTGCCTGGAGATAAATGTG
s panTro5.chrX                 444749 60 + 155549662 CATATTTTCACATTGGTTTTGAAGGTCCTGATGGAAAATATGTGCCTGGAGATAAATGTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172379 60 -    177848 CATATTTTCACATTGGTTTTGAAGGTCCTGATGGAAAATATGTGCCTGGAGATAAATGTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       337858 60 +    417917 CATATTTTCACATTGGTTTTGAAGGTCCTGATGGAAAACGTGTGCCTGGAGATAAATGTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74307 60 + 141252148 CCTATTTTCACATTGGTTTTGAAGGTTCTGATGGAAAACATGTACCTGGAGATAAATGTA
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  32883 60 -     38397 CATGTTTTCACATTGGTTTTGAAGGTCCTGATGGAGAACATGTGCCTGGAGATAAATGTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    30711 60 +     34961 CATGTTTTCACATTGGTTTTGAAGGTCCTGATGGAGAACATGTGCCTGGAGATAAATGTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435363 60 +  25972781 CATGTTTTCACATTGGTTTTGAAGGTCCTGATGGAGAACATGTGCCTGGAGATAAATGTG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       304992 60 -   1025902 CATGTTTTCACATTGGTTTTGAAGGTCCTGATGGAGAACATGTGCCTGGAGATAAATGTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       281796 60 -    350446 CGTGTTTTCACATTGGTTTTGAAGGTCCTGATGGAGAACATGTGCCTGGAGATAAATGTG
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 380370 60 + 123869142 CACGTTTTCACCTCGGTGTCACAGGTCCTGACGCAAAACATGTGTGTGGAGATAAATGTG
i canFam3.chrX                 I 24 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             334401 30 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=18612.000000
s hg38.chrX_KI270880v1_alt     259676 3 +    284869 CTT
s panTro5.chrX                 444809 3 + 155549662 CTT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172439 3 -    177848 CTT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       337918 3 +    417917 CTT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74367 3 + 141252148 CTT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  32943 3 -     38397 CTT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    30771 3 +     34961 CTT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435423 3 +  25972781 CTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       305052 3 -   1025902 CTT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       281856 3 -    350446 CTT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             334431 3 +  11138919 CTT
i otoGar3.GL873584             I 30 C 0
s canFam3.chrX                 380430 3 + 123869142 CTT
i canFam3.chrX                 C 0 T 87
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=1736295.000000
s hg38.chrX_KI270880v1_alt     259679 426 +    284869 TAACCAAATGTGTGTCTTCTGGAACATTCTCTGGATAGCTCTAGCCAG--TGAGGAGTAAGGACAGCTGCTTCCTTTG--GACCCTACACTGACCATTGTTTGTCTCTACCTGCACAACCTTTATCTCTCCTCCA-GTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGGCACCATAATTGGCTCAAAGATGGGCATAGGACTCAGTGCAAGCCCTGAGTTTGTGCAGAAACTGAGCAGTGTAACAGCCTGGGAGGAAGTCCTGGAGGGACTTGAGCAAGATGACTTATCAGAGACAGAATCTGAGGA-GAAGGCTCAGAACTTACCTCTAATCTCTTGCATGTTGAACCCAACaactcaaatgaaaaccagagctcatggttgctgttgagacagtccacactttccagcctcctgaagcagagagtg
s panTro5.chrX                 444812 426 + 155549662 TAACCAAATGTGTGTCTTCTGGAACATTCTCTGGATAGCTCCAGCCAG--TGAGGAGTAAGGACAGCTGCTTCCTTTG--GACCCTACACTGACCATTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCCA-GTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGGCACCATAATTGGCTCAAAGATGGGTGTAGGACTCAGTGCAAGCCCTGAGTTTGTGCAGAAACTGAGCAGTGTAACAGCCTGGGAGGAAGTCCTAGAGGGACTTGAGCAAAATGACTTATCAGAGACAGAATCTGAGGA-GAAGGCTCAGAACTTACCTCTAATCTCTTGCATGTTGAACCCAACaactcaaatgaaaaccagagctcatggttgctgttgagacagtccacactttccagcctcctgaagcagagagtg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172442 425 -    177848 TAACCAAATGTGTGTCTTCTGGAACATTCTCTGGATAGCTCTAGCCAG--TGAGGAGTAAGGACAGCTGCTTCCTTTG--GACCCTACACTGACCATTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCCA-GTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGGCACCATAATTGGCTCAAAGATGGGCGTAGGACTCAGTGCAAGCCCTGAGTTTGTGCAGAAACTGAGCAGTGTAACAGCCTGGGAGGAAGTCCTGGAGGGACTTGAGCAAGATGACTTATCAGAGACAGAATCTGAGGA-GAAGGCTCAGAACTTA-CTCTAATCTCTTGCATGTTGAACCCAACaactcaaatgaaaaccagagctcatggttgctgttgagacagtccacactttccagcctcctgaagcagagagtg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       337921 426 +    417917 TAACCAAATGTGTGTCTTCTGGAACATTCTCTGGATAGCTCTAGCAAG--TGAGGACTAAGGATAGCTGCTTCCTTTG--GACCCTACAGTGACCATTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCCA-GTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGGCACCCTAATTGGTTCAAAGATGGGCGTAGGACTCAGTGCAAGCCCTGAGTTTGTGCAGAAACTGAGCAATGTAACAGCCTGGGAGGAAGTCCTGGAGGGACTTGAGCAAGATGACTTATCAGAGACAGAATCTGAGGA-GAAGGCTCAGAACTTAcctctaatctcttgcttgttgaacccaacaactcaaatgaaaaccagagctcatggttgctgttgagacagtccacactttccagcctcctgaagcagagagtg
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74370 426 + 141252148 TAACCAAATGTGGGTCTTCTGGAACATTCTCTGGATAGCTCTAGCCAG--TGAGGAGTAAGGACAGCTGCTTCCTTTG--GACGCTACAGTGACCATTGTTTGTCTCTACCTGCATGACTTCTATCTCTCCTCCA-GTTTAAGCAACGAGTTTCCTGCAGGTGAACATCCTGGCACCATAATTGGTTCAAAGATGGGCATAGGACTCAGTGCAAGCCCTGAGTTTGTGCAGAAACTGAGCAGTGTAACAGCCTGGGAGGAAGTCCTGGAGGGACTTGAGCAAGGTGACTTATCAGAGACAGAATCTGAGGA-GAAGGCTCAGAACTTAcctctaatctcttgcaggttgaagccaacaactcaactgaaaaccagagctcatggttgctgttgagacagtccacactttccagcctcctgaagcagagagtg
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  32946 427 -     38397 TAACCGAATATGTGTCTTCTGGAACACTCTCCAGATAGCTCTAGCCAG--TGAGAAGTAAGGACAGCTGCTTCCTTTG--GACCCTACAGCGACCATTGTTTCTCTCTACCTGCACAACGTCTATCTCTCCTCAAGGTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGACACCATAATTGGTTCAAAGATGGGTGTAGGACTTATTGCAAGCCCTGGATTTGTGTAGAAAGTGAGCAGTGTAACAGCCTGGGAGGAGGTCCTAGAGGGACTTGAACAAGGTGACTTATCAGAGAGAGAATCTGAGGA-AAAGGCTCAGAACTTACCTCTAATCTCTTGCAGGTTGAACCCAACAATTCAATGGAAAACCAGGGCTCATAGTTTCTGTTGGGACAGTCCACATTTTCCAGCCTCCTGAAGCAGAGAGTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    30774 391 +     34961 TAACCGAATATGTGTCTTCTGGAACACTCTCCAGATAGCTCTAGCCAG--TGAGAAGTAAGGACAGCTGCTTCCTTTG--GACCCTACAGCGACCATTGTTTGTCTCCACCTGCACAACCTCTATCTCTCCTCAAGGTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGACACCATAATTGGTTCAAAGATGGGTGTAGGACTTATTGCAAGCCCTGGATTTGTGTAGAAAGTGAGCGGTGTAACGGCCTGGGAGGAGGTCCTAGAGGGACTTGAACAAGGTGACTTATCAGAGAGAGAATCTGAGGA-AAAGGCTCAGAACTTACCTCTAATCTCTTGCAGGTTGAACCCAACAATTCAATGGAAAACCAGGGCTCATAGTTTCTGTTGGGA------------------------------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435426 427 +  25972781 TAACCGAATATGTGTCTTCTGGAACACTCTCCAGATAGCTCTAGCCAG--TGAGAAGTAAGGACAGCTGCTTCCTTTG--GACCCTACAGCGACCGTTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCAAGGTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGACACCATAATTGGTTCAAAGATGGGTGTAGGACTTATTGCAAGCCCTGGATTTGTGTAGAAAGTGAGCAGTGTAACAGCCTGGGAGGAGGTCCTAGAGGGACTTGAACAAGGTGACTTATCAGAGAGAGAATCTGAGGA-AAAGGCTCAGAACTTAcctctaatctcttgcaggttgaacccaacaattcaatggaaaaccagggctcatagtttctgttgggacagtgcacattttccagcctcctgaagcagagagtg
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       305055 427 -   1025902 TAACCGAATATGTGTCTTCTGGAACACTCTCCAGATAGCTCTAGCCAG--TGAGCAGTAAGGACAGCTCATTCCTTTG--GACCCTACAGCGACCATTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCCAGGTTTAAGCAACCAGTTTCCTGCAGGTGAACATCCTGACACCATAATTGGTTCAAAGATGGGTGTAGGACTTATTGCAAGCCCTGGATTTGTGTAAAAAGGGAGCAGTGTAACAGCCTGGGAGGAGGCCCTAGAGGGACTTGAACAAGGTGACTTATCAGAGAGAGAATCTGAGGA-AAAGGCTCAGAACTTAcctctaatctcttgcaggttgaacccaacgcttcaacagaaaaccagggctcatagtttctgttgagacagtccacactttccagcctcctgaagcagagagtg
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       281859 427 -    350446 TAACCGAATATGTGTCTTCTGGAACACTCTCCAGATAGCTCTAGCCAG--TGAGAAGTAAGGACAGCTGCTTCCTTTG--GACCCTACAGCGACCATTGTTTGTCTCTACCTGCACAACCTCTATCTCTCCTCCAGGTTTAAGCAACCGGTTTCCTGCAGGTGAACATCCTGACACCATAATTGGTTCCAAGATGGGTGTAGGACTTATTGCAAGCCCTGGATTTGGGCAGAAAGGGAGCAGTGTAACAGCCTGGGAGGAGGCCCTAGAGGGACTTGAACAAGGTGACTTATCAGAGAGAGAATCTGAGGG-AAAGGCTCAGAACTTACCTCTAATTTCTTGCAGGTTGAACTCAACAATTCAACGGAAAACCAGGGCTCATAGTTTCTGTTGAGACAGTCCACACTTTCCAGCCTCCTGAAGCAGAGAGTG
i manLeu1.NW_012108508v1       C 0 I 275
s otoGar3.GL873584             334434 415 +  11138919 GGACCCAACCCAAGCCTTCTGGAGAATTCTCCTGTTATCTCTGCCCAGGTGGAGAGGGGGGAATCCCTGCTTTCTTTGAAAATCTGGTAGCAACCATCAGTTGTGGTTGCCTGCAAAGTGTCCATCTCCCCTTCTCAAATCAGCAGCTGGTTGTCTGCAGGTGAACATCTTGGCACCGTGATAGGTTCAAGGGTGGGCACTTGACTCAGTGCAAATCCTGAGTTGCTACAGAAATGGAGAAATTTGATAAACTTGGAGAAAATTCTGGAGTGAGTTTAGCAA---GACCTATTAGGGAGGGACTCTAAGGACTCAGGCGTCAACCTCAGCTCTGCTctcctgcaggttgagcccagc--------tggaa------gctcatggttgctgttgagacagtccacaccgtccagcctcctggggcagagagtg
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=627297.000000
s hg38.chrX_KI270880v1_alt     260105 167 +    284869 gagaagaatgaagaggaa-ctggggaggtagaGGCTCTCTTGGGTTTATTGTAATACTTGAGTGAGTTAGCCCTTTTGAACAAACTTGACATTGAGCAGGTGTTGATTACAAATGAG-----ATGTTTCCTGTGTTACTCATGGACACCCAGAAGAGGCAGGGTATTAGAAAG
s panTro5.chrX                 445238 167 + 155549662 gagaagaatgaagaggaa-ctggggaggtagaGGCTCTCTTGGGTTTATTGTAATACTTGAGTGAGTTAGCCCTTTTGAACAAACTTGACATTGAGCAGGTGTTGATTACAAATGAG-----ATGTTTCCTGTGTTATTAATGGACACCCAGAAGAGGCAGGGTATTAGAAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 172867 167 -    177848 gagaagaatgaagaggaa-ctggggaggtagaGGCTCTCTTGGGTTTATTGTAATACTTGAGTGAGTTAGCCCTTTTGAACAAACTTGACATTGAGCAGGTGTTGATTACAAATGAG-----ATGTTTCCTGTGTTATTAATGGACACCCAGAAGAGGCAGGGTATTAGAAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338347 147 +    417917 gagaagAA---------------------AGAGGCTCTCTTGGGTTTATTGTAATACTTGAGTGAGTTAGCCCTTTTGAACAAACTTGACATTGAGCAGGTGTTTATTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACACCCAGAAGAGGCAGGGTATTAGAAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74796 167 + 141252148 gagaagaatgaagaggaa-ctggggaggtagaGACTCTGTTGGGTTTATTGTAATACTTGAGTGAGTTAGCCCTTTTGAACAAACTTGACACTGAGCGGGTGTTGATTACAAATGAG-----ATGTTTGCTGTGTTACTAATGGACACCCAGAAGAGGCAGGGTATTAGAAAG
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33373 167 -     38397 GAGAAGAATGAAGAGGAA-CTGGGGAGGTAGAAGCTCTCTTGGGTTTGTGGTAATACTTGAATGAGTTAGCCCTTTTGAACAAACTGGACATTAAGAAGGTGTTGGTTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACACCCGGAAGAGGTAGGGTATTAGAAAG
i rheMac8.chrUn_NW_014831239v1 C 0 I 357
s macFas5.chrUn_AQIA01076778    31165 146 +     34961 ----------------------GAGAGGTAGAAGCTCTCTTGGGTTTGTGGTAATACTTGAATGAGTTAGCCCTTTTGAACAAACTGGACATTAAGAAGGTGTTGGTTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACACCCGGAAGAGGTAGGGTATTAGAAAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       435853 167 +  25972781 gagaagaatgaagaggaa-ctggggaggtagaAGCTCTCTTGGGTTTGTGGTAATGCTTGAATGAGTTAGCCCTTTTGAACAAACTGGACATTAAGAAGGTGTTGGTTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACAACCAGAAGAGGTAGGGTATTAGAAAG
i macNem1.NW_012017243v1       C 0 I 361
s cerAty1.NW_012001098v1       305482 167 -   1025902 gagaagaatgaggaggaa-ctggggaggtagaAGCTCTCTTGGGTTTGTGGTAATACTTGAATGAGCTAGCCCTTTTGAACAAACTGGACATTGAGCAGGTGTTGGTTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACACCCGGCAGAGGTAGGGTATTAGAAAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       282561 167 -    350446 GAGAAGAATGAAGAGGAA-CTGGGGAGGTAGAAGCTCTCTTGGGTTTGCGGTAATACTTGAATGAGTTAGCCCTTTTGAACAAACTGGACATTGAGCAGGTGTTGATTACAAATGAG-----ATGTTTCCTGTGTTACTAATGGACACCCGGCAGAGGTAGGGTATTAGAAAG
i manLeu1.NW_012108508v1       I 275 C 0
s otoGar3.GL873584             334849 160 +  11138919 -aggaaggtacggagggatcCAAGAACCTATGGGCTCTCCTGGATTCCCTGTGATGATTCAGTGAGCTGGCAGACGTGAGCAGACATGGCACAGAGCAGGCACTGAGTGTGTATTTGTGTCTCTGCTTCCTGTGCTACTGATGGGTACTCAGAAAATGAAG------------
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=39995.000000
s hg38.chrX_KI270880v1_alt     260272 9 +    284869 GGTATTAGC
s panTro5.chrX                 445405 9 + 155549662 GGTATTAGC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173034 9 -    177848 GGTATTAGC
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338494 9 +    417917 GGTATTAGC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74963 9 + 141252148 GGTATTAGC
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33897 9 -     38397 GGTATTAGC
i rheMac8.chrUn_NW_014831239v1 I 357 C 0
s macFas5.chrUn_AQIA01076778    31311 9 +     34961 GGTATTAGC
i macFas5.chrUn_AQIA01076778   C 0 I 369
s macNem1.NW_012017243v1       436381 9 +  25972781 GGTATTAGC
i macNem1.NW_012017243v1       I 361 C 0
s cerAty1.NW_012001098v1       305649 9 -   1025902 GGTATTAGC
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       282728 9 -    350446 GGTATTAGC
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             335009 9 +  11138919 CGTGTTACT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=5005.000000
s hg38.chrX_KI270880v1_alt     260281 1 +    284869 T
s panTro5.chrX                 445414 1 + 155549662 T
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173043 1 -    177848 T
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338503 1 +    417917 T
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74972 1 + 141252148 T
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33906 1 -     38397 T
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31689 1 +     34961 T
i macFas5.chrUn_AQIA01076778   I 369 C 0
s macNem1.NW_012017243v1       436390 1 +  25972781 T
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       305658 1 -   1025902 T
i cerAty1.NW_012001098v1       C 0 I 404
s manLeu1.NW_012108508v1       282737 1 -    350446 T
i manLeu1.NW_012108508v1       C 0 I 410
s otoGar3.GL873584             335018 1 +  11138919 T
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=125812.000000
s hg38.chrX_KI270880v1_alt     260282 68 +    284869 TCCACTGGCTGCTGTAACGAAAATGATGACAGACTTCAtcttagtttattttgtacttctataaaaga
s panTro5.chrX                 445415 68 + 155549662 TCCACTGGCTGCTGTAACGAAAATGATTACAAACTTCAtcttagtttattttgtactgctataaaaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173044 68 -    177848 TCCACTGGCTGCTGTAACGAAAATGATTACAAACTTCAtcttagtttattttgtactgctataaaaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338504 68 +    417917 TCCGCTGGCTGCTGTAATGAAAATGATGACAGACTTCAtcttagtttattttgtactgctataaaaga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  74973 68 + 141252148 TCCACTGGCTGCTGTAACAAAAATGATGGCAAACATCAtcttagtttattttgtactgctataaaaga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33907 52 -     38397 TCCATTGGCCGCTGTAACAAAAACGATGACAAATATCAtcttagtttatttt----------------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31690 52 +     34961 TCCATTGGCCGCTGTAACAAAAACGATGACAAATATCATCTTAGTTTATTTT----------------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       436391 52 +  25972781 TCCATTGGCTGCTGTAACAAAAATGATGACAAATATCAtcttagtttatttt----------------
i macNem1.NW_012017243v1       C 0 C 0
s otoGar3.GL873584             335019 47 +  11138919 TCCACTGGCTGC-------------------AACATtgtctccattctttttctactgctataaaa--
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e manLeu1.NW_012108508v1       282738 410 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e cerAty1.NW_012001098v1       305659 404 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=18777.000000
s hg38.chrX_KI270880v1_alt     260350 6 +    284869 gtgcca
s panTro5.chrX                 445483 6 + 155549662 gtgcca
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173112 6 -    177848 gtgcca
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338572 6 +    417917 gtgcca
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75041 6 + 141252148 gtgcca
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33959 6 -     38397 gtgcct
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31742 6 +     34961 GTGCCT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       436443 6 +  25972781 gtgcct
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       283148 6 -    350446 gtgcct
i manLeu1.NW_012108508v1       I 410 C 0
s otoGar3.GL873584             335066 6 +  11138919 acgcca
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e cerAty1.NW_012001098v1       305659 404 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=615225.000000
s hg38.chrX_KI270880v1_alt     260356 164 +    284869 ctgattaggtaatttataaacaatgggagttcattggtctcatggttccgagggctgg-------aaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctgtg-----------------------------------------------------------------------------tcatccATTGTGAACTATctctt-cgaggtacttcatatccccacttcagagatggaga
s panTro5.chrX                 445489 164 + 155549662 ctgattaggtaatttataaacaatgggagttcattggtctcgtggttccgagggctgg-------aaagtctgaggttgaggtgctatgtctcgtgagg-----atctttttgctgtg-----------------------------------------------------------------------------tcatccATTGTGAACTATctctt-cgaggtacttcatatccccacttcagagatggaga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173118 164 -    177848 ctgattaggtaatttataaacaatgggagttcattggtctcgtggttccgagggctgg-------aaagtctgaggttgaggtgctatgtctcgtgagg-----atctttttgctgtg-----------------------------------------------------------------------------tcatccATTGTGAACTATctctt-cgaggtacttcatatccccacttcagagatggaga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338578 165 +    417917 ctgattaggtaatttagaaacaatgggagttcattggtctcgtggttctgagggctgg-------aaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctgtg-----------------------------------------------------------------------------tcatccATTGTGAACTATCTCTTCCGaggtacttcatatccccacttcagagatggaga
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75047 164 + 141252148 ctgattaggtaatttataaacaatgggagtttattggtctcatggttctgagggctgg-------gaagtctgaggtcgaggcgctatgcctggtgagg-----attgttttgctatg-----------------------------------------------------------------------------tcatccATTGTGAACTATCTCTT-CAaggtacttcatatccccacttcagagatgaaga
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  33965 171 -     38397 ctggttaggtaatttatacacaatgggagtttattggtcccatggttctgagggctgggaagtctgaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctaca-----------------------------------------------------------------------------tcatccATTGTGAACAATCTCTT-CCAGATACTTCACatccccactttggagacgaaga
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31748 171 +     34961 CTGGTtaggtaatttatacacaatgggagtttattggtcccatggttctgagggctgggaagtctgaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctaca-----------------------------------------------------------------------------tcatccATTGGGAACAATCTCTT-CCAGATACTTCACatccccactttggagacgaaga
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       436449 171 +  25972781 ctggttaggtaatttatacacaatgggagtttattggccccatggttctgagggctgggaagtctgaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctaca-----------------------------------------------------------------------------tcatccATTGTGAACAGTCTCTT-Ccagatacttcacatccccactttggagacgaaga
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       306063 171 -   1025902 ctggttaggtgatttatacacaatgggagtttatcggtctcgtggttctgagggctgggaagtctgaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctacg-----------------------------------------------------------------------------tcatccATTGTGAACAATCTCTT-CCGGATACTTCACATCCCCACTTCGGAGACGAAGA
i cerAty1.NW_012001098v1       I 404 C 0
s manLeu1.NW_012108508v1       283154 171 -    350446 ctggttaggtaatttatacacaataggagtttatcggtctcatggttctgagggctgggaagtctgaagtctgaggttgaggtgctatgtctggtgagg-----atctttttgctacg-----------------------------------------------------------------------------tcatccATTGTGAACAATCTCTT-CCAGATACTTCACatccccacttcggagatgaaga
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             335072 237 +  11138919 ccagttgggtgaataataatcaacagatgttc----gggtcatggttctggaggctgg-------gaagtccaagattgatgggctacacctggtgagggccaaatattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataagagagaagaaaggagaaaggaggaagggaaggggctgaagtaactctttcatcaggaacc-cctttc-tgtggta----acagacccatttctgagataacag
i otoGar3.GL873584             C 0 I 641
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=181514.000000
s hg38.chrX_KI270880v1_alt     260520 46 +    284869 aactgaggttGAAGAATGGTCAGTCTTATTGCTCAGCCCCAGTGAT
s panTro5.chrX                 445653 46 + 155549662 aactgaggttgaagaatggtcagtCTTATTGCTCAGCCCCAGTGAT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173282 46 -    177848 aactgaggttGAAGAATGGTCAGTCTTATTGCTCAGCCCCAGTGAT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338743 46 +    417917 aactgaggttgaagaatggtcagtCTTATTGCTCAGCCCCAGTGAT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75211 46 + 141252148 aactgagTTTGAAGAATGGTCAGTCTTATTGCTCAGCCCCAGTGAT
i nomLeu3.chrX                 C 0 T 1891
s rheMac8.chrUn_NW_014831239v1  34136 46 -     38397 aactgaggttGAAGAACGGGCAGTCTTATTTCTCAGCCCCAGTGAT
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31919 46 +     34961 aactgaggttGAAGAACGGGCAGTCTTATTTCTCAGCCCCAGTGAT
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       436620 46 +  25972781 aactgaggttGAAGAACGGGCAGTCTTATTTCTCAGCCCCAGTGAT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       306234 46 -   1025902 AACTGAGGTTGAAGAACGGGCAGTCTTATTTCTCAGCCCCAGTGAT
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283325 46 -    350446 aactgaggttGAAGAACGGGCAGTCTTATTTCTCAGCCCCAGTGAT
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=275157.000000
s hg38.chrX_KI270880v1_alt     260566 78 +    284869 GGGTGGAGTTGGGTTGACTTCAAACCTACTCTGAAATATAACATTAAGAAATGCTGGCAATATGGCGGTCACCAATAG
s panTro5.chrX                 445699 78 + 155549662 GGGTGGAGTTGGGTTGACTTCAAACCTACTCTGAAATATAACATTAAGAAATGCTGGCAATATGGCAGTCACCAATAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173328 78 -    177848 GGGTGGAGTTGGGTTGACTTCAAACCTACTCTGAAATATAACATTAAGAAATGCTGGCAATATGGCAGTCACCAATAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338789 78 +    417917 GGGTGGAGTTGGGTTGACTTCAAACCTACTCTGAAATATAACATTAAGAAATGCTGGCAATATGGCGGTCACCAATAG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  73366 78 + 141252148 GGGGGGAGTTGGGCTGGCTCCAAACCTGTCCCCAAAGATAGCACTAACAAATGCTGGCAACGTGGTGGTCACAAAGAG
i nomLeu3.chrX                 T 1891 C 0
s rheMac8.chrUn_NW_014831239v1  34182 78 -     38397 GAGTGGAGCTGGGTTGACTTCCAACCTACTCCCAAAGATAGCATTAAGAAATGCTGGCAATGTGGCGGTCACCAATAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    31965 78 +     34961 GAGTGGAGCTGGGTTGACTTCCAACCTACTCCCAAAGATAGCATTAAGAAACGCTGGCAATGTGGCGGTCACCAATAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       436666 78 +  25972781 GAGTGGAGCTGGGTTGACTTCCAACCTACTCCCAAAGATAGCATTAAGAAATGCTGGCAATGTGGCGGTCACCAATAG
i macNem1.NW_012017243v1       C 0 I 819
s cerAty1.NW_012001098v1       306280 78 -   1025902 GAGTGGAGCTGGGTTGACTTCCAACCTACTCCCAAAGACAGCATTAAGAAATGCTGGCAATGCGGTGGTCACCAACAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283371 78 -    350446 GAGTGGAGCTGGGTTGACTTCCAACCTACTCCCAAAGATAGTATTAAGAAATGCTGGCAATGCGGTGGTCACCAATAG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=153732.000000
s hg38.chrX_KI270880v1_alt     260644 58 +    284869 TGTTCATCAACTCCAGAGGGCAAGGAGGTCTCG-TAACTAGAAAACCTCACAGCTATTG
s panTro5.chrX                 445777 58 + 155549662 TGTTCATCAACTCCAGAGGGCAAGGAGGTCTCC-TAACTAGAAAACCTCACAGCTATTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173406 58 -    177848 TGTTCATCAACTCCAGAGGGCAAGGAGGTCTCC-TAACTAGAAAACCTCACAGCTATTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338867 58 +    417917 TGTTCATCAACTGCAGAGGGCAAGGAGGTCTCC-TAACTAGAAAACCTCACAGCTATTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  73444 57 + 141252148 TG-TCATCAACTCCAGATAGCAACCAGGTCTCC-TTACCAGAAAACCTAACAGGCATTG
i nomLeu3.chrX                 C 0 I 1756
s rheMac8.chrUn_NW_014831239v1  34260 59 -     38397 CGATCATCAACTCCAGATGGCAAGGAGGCCTCCTTAACTGGAAAACCTCACAGCTATTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    32043 59 +     34961 CGATCATCAACTCCAGATGGCAAGGAGGCCTCCTTAACTGGAAAACCTCACAGCTATTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       306358 59 -   1025902 CGTCCATCAACTCCAGATGGCAAGGAGGCGTCCTTAACTGGAAAACCTCACAGCTATTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283449 59 -    350446 CGTCCATCAACTCCAGATGGCAAGGAGGCCTCCTTAACTAGAAAACCTCACAGCTATTG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=22286.000000
s hg38.chrX_KI270880v1_alt     260702 10 +    284869 CTGAAGGAAG
s panTro5.chrX                 445835 10 + 155549662 CTGAAGGAAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173464 10 -    177848 CTGAAGGAAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338925 10 +    417917 CTGAAGGAAG
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  34319 10 -     38397 GTGAAGGAAG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    32102 10 +     34961 GTGAAGGAAG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       306417 10 -   1025902 GTGAAGGGAG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283508 10 -    350446 GTGAAGGAAG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  73501 1756 + 141252148 I
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=341331.000000
s hg38.chrX_KI270880v1_alt     260712 114 +    284869 GGCACAGAGTTGAATTCAACATGGTTGACTCCTTGAAACCTCCATCTTCCCTCTGACGTACAGCAAGTCCTGCCTGAGATTCTCCTCTGGTGA--TTGTTTGCTGTTTTTCAACTG
s panTro5.chrX                 445845 114 + 155549662 GGCACAGAGTTGAATTCAACATGTTTGACTCCTTGAAACCTCCATCTTCCCTCTGACGTACAGCAAGTCCTGCCTGAGATTCTCCTGTGGTGA--TTGTTTGCTGTTTTTCAACTG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173474 114 -    177848 GGCACAGAGTTGAATTCAACATGGTTGACTCCTTGAAACCTCCATCTTCCCTCTGACGTACAGCAAGTCCTGCCTGAGATTCTCCTCTGGTGA--TTGTTTGCTGTTTTTCAACTG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       338935 114 +    417917 GGCACAGAGTTGAATTCAACATGGTTGACTCCTTGAAACCTCCATCTTCCCTCTGACGTACAGCAAGTCCTGCCTGAGATTCTCCTCTGGTGA--TTGTTTGCTGTTTTTCAACTG
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75257 112 + 141252148 GGCACAGAGTTGAAGTCAACATGGTCGACTCCTTGAAACCTCCATCTTCCCTCTGACGTACAGCAAGTCCTGCCTGAGATTCTCCTCTGGTGA--CTGTTTGCTG--TTTCAACTG
i nomLeu3.chrX                 I 1756 M 425
s rheMac8.chrUn_NW_014831239v1  34329 116 -     38397 GGCACAGAGTTGAAGTCACCATGGTTGACCCCTTGAAACCTCCATCTTCCCTTTGATGTACAACAAGCCCTGCCTGAGGTTCTCCTCTGGTGATTTTGTTTGCTGTTTTTCAACTG
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    32112 116 +     34961 GGTACAGAGTTGAAGTCACCATGGTTGACCCCTTGAAACCTCCATCTTCCCTTTGATGTACAACAAGCCCTGCCTGAGGTTCTCCTCTGGTGATTTTGTTTGCTGTTTTTCAACTG
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       306427 116 -   1025902 GGCACAGAGTTGAAGTCACCATGGTTGACCCCTTGAATCCTCCATCTTCCCTTTGATGTATAGCAAGCCCTGCCTGAGGTTCTCCTTTGGTGATTTTGTTTGCTGTTTTTCAACTG
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283518 116 -    350446 GGCACAGAGTTGAACTCACCATGGTTGACCCCTTGAATCCTCCATCTTCCCTTTGATGTATAGCAAGCCCTGTCTGAGATTCTCCTCTGGTGATTTTGTTTGCTGTTTTTCAACTG
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=277110.000000
s hg38.chrX_KI270880v1_alt     260826 130 +    284869 GACCAGCTCCAGAGCCCAAGCTAACTGGGGTAATGACGAGGGGAGGGTATgattgatagatagatagataaatgatagagatagatagatgggta-------------------------gatagatatataga----tatacagatgatagatggata
s panTro5.chrX                 445959 130 + 155549662 GACCAGCTCCAGAGCCCAAGCAAACTGGGGTAATGACGAGGGGAGGGTGTgatggatagacagatagataaatgataaagatagatagatgggta-------------------------gatagatatataga----tatacagatgatagatggata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173588 130 -    177848 GACCAGCTCCAGAGCCCAAGCAAACTGGGGTAATGACGAGGGGAGGGTGTgatggatagacagatagataaatgatagagatagatagatgggta-------------------------gatagatatataga----tatacagatgatagatggata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339049 130 +    417917 GACCAGCTCCAGAGCCCAAGCAAACTGGGGTAATGACGAGGGGAGGGTGTgatggatagacagatagataaatgatagagatagatagatgggta-------------------------gatagatatataga----tatacagatgatagatggata
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  34445 150 -     38397 GACCAGTTCCAGAGCCCAAGCAAACTGGGGCAATGATGAGGGGAGGGTGTgatggatagatagatagatagat-agatagatagatagatagata--------gatcaatgatagagatggatagatagatagacaggcagacagataatagatggatg
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    32228 146 +     34961 GACCAGTTCCAGAGCCCAAGCAAACTGGGGCAATGATGAGGGGAGGGTGTgatggatagatagatagatagat-agatagatagatagatagata--------gatcaatgatagagatggatagatagataga----cagacagataatagatggatg
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       306543 154 -   1025902 GACCAGCTCCAGAGCCCAAGCAAACTGGGGCAATGATGAGGGGAGGGTGTgatggatagatagatagatagat-agatagatagatagatagatagatagatcgatcaatgatagagatggatagatagacaga----cagacagataatagatggata
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283634 142 -    350446 GACCAGCTTCAGAGCCCAAGCAAAGTGGGGCAATGATGAGGGGAGGGTGTgatggatagatagatagatagat-agatagatagatagatc------------gatcaatgatagagatggatagatagacaga----cagacagataatagatggata
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             335309 641 +  11138919 I
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=137422.000000
s hg38.chrX_KI270880v1_alt     260956 65 +    284869 gattgat-agaggggtagatagatatatagatag-atgatagatggatagagagattgatagatggg----
s panTro5.chrX                 446089 61 + 155549662 gattgat-agaggggtagatagatatatagatag-atgatagatggat----agattgatagatggg----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173718 60 -    177848 gattgat-aga-gggtagatagatatatagatag-atgatagatggat----agattgatagatggg----
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339179 61 +    417917 gattgat-agaggggtagatagatatatagatag-atgatagatggat----agattgatagagggg----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  34595 61 -     38397 gattgat-agatgggtaggtagatatatagatag-atgatagatggat----agattgttagatggg----
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    32374 61 +     34961 gattgat-agatgggtaggtagatatatagatag-atgatagatggat----agattgttagatggg----
i macFas5.chrUn_AQIA01076778   C 0 C 0
s cerAty1.NW_012001098v1       306697 57 -   1025902 gattgat-agatg----ggtagatatacagatag-atgatagatggat----agattgttagatggg----
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       283776 61 -    350446 gattgat-agatgagtagatagatatatagatgg-atgatagatggat----agattgttagatggg----
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             335950 67 +  11138919 GAATGATGAAATGGTTACGTTTTTAGAAAAATAGTATCAGGgatgaaa----agagagatagataagtagg
i otoGar3.GL873584             I 641 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=257494.000000
s hg38.chrX_KI270880v1_alt     261021 126 +    284869 tagacagatatataggtagatgatagatggatagattgatagaagggta----gatatata---gatagatgggtagatagacaaatgatagatgaatagataaatgatatatgatggacagatacatagatg
s panTro5.chrX                 446150 126 + 155549662 tagacagatatataggtagatgatagatggatagattgatagaagggta----gatatata---gatagatgggtagatagacaaatgatagatgaatagataaatgatatatgatggacagatacatagatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173778 126 -    177848 tagacagatatataggtagatgatagatggatagattgatagaagggta----gatatata---gatagatgggtagatagacaaatgatagatgaatagataaatgatatatgatggacagatacatagatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339240 126 +    417917 tagatagatatataggtagatgatcgatggatagattgatagaagggta----gatatata---gatagatgggtagatagacaaatgatagatgaatagataaatgatagacgatggacagatacatagatg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  34656 125 -     38397 --------tagatagatagatggtagatggatagattgatagaggggtagatcgatatataagtgatagttgggtagatagatagataatagatgaatagataaatgataaatgatggacagatagacagatg
i rheMac8.chrUn_NW_014831239v1 C 0 I 271
s macFas5.chrUn_AQIA01076778    32435 125 +     34961 --------tagatagatagatggtagatggatagattgatagaggggtagatcgatatataagtgatagttgggtagatagatagataatagatgaatagataaatgataaatgatggacagatagacagatg
i macFas5.chrUn_AQIA01076778   C 0 I 234
s cerAty1.NW_012001098v1       306754 125 -   1025902 t----agatagatagatagatggtagatggatagattgatagaggggtagacggatatataagtgatagttgggtagatagatagataatagatgaatagataaatgatagatgatggacagatagatg----
i cerAty1.NW_012001098v1       C 0 I 304
s manLeu1.NW_012108508v1       283837 129 -    350446 t----agatagatagatagatggtagatggatagattgatagaggggtagaccgatatgtaagtgatagttgggtagatagatagataatagatgaatagataaatgatagatgatggacagatagatagatg
i manLeu1.NW_012108508v1       C 0 I 270
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             336017   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=910.000000
s hg38.chrX_KI270880v1_alt     261147 1 +    284869 a
s panTro5.chrX                 446276 1 + 155549662 a
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173904 1 -    177848 a
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339366 1 +    417917 a
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    32794 1 +     34961 a
i macFas5.chrUn_AQIA01076778   I 234 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e manLeu1.NW_012108508v1       283966 270 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             336017 0 +  11138919 C
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e cerAty1.NW_012001098v1       306879 304 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  34781 271 -     38397 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=3822.000000
s hg38.chrX_KI270880v1_alt     261148 2 +    284869 ta
s panTro5.chrX                 446277 2 + 155549662 ta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173905 2 -    177848 ta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339367 2 +    417917 ta
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    32795 2 +     34961 ta
i macFas5.chrUn_AQIA01076778   C 0 I 34
s cerAty1.NW_012001098v1       307183 2 -   1025902 ta
i cerAty1.NW_012001098v1       I 304 C 0
s manLeu1.NW_012108508v1       284236 2 -    350446 ta
i manLeu1.NW_012108508v1       I 270 C 0
e canFam3.chrX                 380433 87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             336017 0 +  11138919 C
e chlSab2.chrUn_KE147541v1     239119 35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  34781 271 -     38397 I
e macNem1.NW_012017243v1       436744 819 +  25972781 I

a score=953920.000000
s hg38.chrX_KI270880v1_alt     261150 362 +    284869 gatggataaatagataaatgatagatgaatagataaaagatagatg---gatagataaatgacagatggatagatagataaataatagatgaatagataaaagatagacgatggacagatacctagatgatagatggacaaatagataaatgatagatgaatagataaatgatagaaagatagataaatgacagat--------------ggatagatagataaatg-tagatgaatagataaaagacacattgatagataaatgatggatagacacataaacaatagatggatggatagata---gatagatgggtatttagatggatagatagataaatagataagtaatacatgaatagataaatgacagatggatagat----
s panTro5.chrX                 446279 350 + 155549662 gttggataaatagataaatgatagatgaatagataaaagatagatg---gatagataagtgacagatggatagatagataaataatggatgaatagataaaagatagacgatggacagatacctagatgatagatggacaaatagataaatgatagatgaatagataaatgatagaaagatagataaatgacagat--------------ggatagatagataaatg-tagatgaatagataaaagacacattgatagataaatgatggatagatacataaacaatagatggatg----gata---catagatgggtatttagatg----gatagataaatagataagtaatacatgaatagataaatgacagatg----gat----
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 173907 351 -    177848 gttggataaatagataaatgatagatgaatagataaaagatagatg---gatagataaatgacagatggatagatagataaataatagacgaatagataaaagatagacgatggacagatacctagatgatagatggacaaatagataaatgatagatgaatagataaatgatagaaagatagataaatgacagat--------------ggatagatagataaatg-tagatgaatagataaaagacacattgatagataaatgatggatagatacataaacaatagatggatg----gata---catagatgggtatttagatggatagatagataaatagataagtaatacatgaatagataaatgacagatg-----------
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339369 352 +    417917 gatggataaatagataaatgatagatgaatagataaatgatagatg---gatagataaatgacagatggatagatagataaataatagatgaataggtaaaagatagacgatggacagaca--tagatgatagatggacaaatagataaatgatagatgaatagataaatgatagaaatatagataaatgacagat--------------ggatagatagataaatg-tagatgaatagataaaagacacattgataggtaaatgatggatagatacataaacaatagatggatg----gata---gatagatgggtatttagatggatagatagataaatagataagtaatacatgaatagataaaagacagatg----gat----
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  35052 356 -     38397 gatggatagatagataagtaatagatgaatagataaatgatagatggaagatagataaatggcagatgcatagataaataaatgatagatgaatagataaatgagagatgatggagaga----tagatgatagatggataaatagacaaatgatagattaatagataaatgatggatg-atagataaatgacagat--------------ggatagatagacacatgatagatgaatagataaaatatagatgaatatataaatgatggatagatacataaacaatagatggataaatagatacatgatagatgagtatttagatg----gatagatagaaaaataagtaatagatgaatagataaatgacagatg----gaa----
i rheMac8.chrUn_NW_014831239v1 I 271 C 0
s macFas5.chrUn_AQIA01076778    32831 356 +     34961 gatggatagatagataagtaatagatgaatagataaatgatagatggaagatagataaatggcagatgcatagataaataaatgatagatgaatagataaatgagagatgatggagaga----tagatgatagatggataaatagacaaatgatagatgaatagataaatgatggatg-atagataaatgacagat--------------ggatagatagacacatgatagatgaatagataaaatatagatgaatatataaatgatggatagatacataaacaatagatggataaatagatacatgatagatgagtatttagatg----gatagatagaaaaataagtaatagatgaatagataaatgacagatg----gaa----
i macFas5.chrUn_AQIA01076778   I 34 C 0
s macNem1.NW_012017243v1       437563 356 +  25972781 gatggatagatagataagtaatagatgaatagataaatgatagatggaagatagataaatggcagatgcatagataaataaatgatagacgaatagataaatgagagatgatggagaga----tagatgatagatggataaatagacaaatgatagatgaatagataaatgatggatg-atagataaatgacagat--------------ggatagatagacacatgatagatgaatagataaaatacagattgatatataaatgatggatagatacataaacaatagatggataaatagatacatgatagatgagtatttagatg----gatagatagaaaaataagtaatagatgaatagataaatgacagatg----gaa----
i macNem1.NW_012017243v1       I 819 C 0
s cerAty1.NW_012001098v1       307185 371 -   1025902 gatggatagatagataagtaatagatgaatagataaatgatagacggaagatagataaatggcagatggatagataaataaatgatagacgaatagataaatgagagatgatggagaga----tagatgatagatggataaatagacaaacgatagatgaatagataaatgatagatgaatagataaatgatggatgatagataaatgacggatagatagacacatgatagatgaatagataaaatatagattaatatataaatgatggatagatacataaacaatagatggataaatagatacatgatagatgagtatttagatg----gatagatagaaaaataagtaatagatgaatagatacatgacagatg----gaa----
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       284238 360 -    350446 gatggatacatagataagtaatagatgaatagataaatgatagatggaagatagataaatggcagatgcatagataaataaatgatagatgaatagataaatgagagatgatggagaga----tagatgatagatggataaatagacaaatgatagatggatagataaatgatggatg-atagataaatgacagat--------------ggatatatagacacatgatagatgaatagataaaatatagattaatatataaatgatggatagatacataaacaatagatggataaatagatacatgatagatgagtatttagatg----gatagatagaaaaataagtaaaagatgaatagatacatgacagatg----gaaagat
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             336017   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     239119  35 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=317140.000000
s hg38.chrX_KI270880v1_alt     261512 103 +    284869 agatagataaatgatagatgaatagataaaagatagatgatggacagatagatgatagatggataaatagataaatgatagatgaatagataaatgatagctg
s panTro5.chrX                 446629 103 + 155549662 agatagataaatgatagatgaatagataaaagatagatgatggacagatagatgatagatggataaatcgataaatgatagatgaatagataaatgatagatg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 174258 102 -    177848 -gatagataaatgatagatgaatagataaaagatagatgatggacagatagatgatagatggataaatcgataaatgatagatgaatagataaatgatagatg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339721 103 +    417917 agatagataaatgatagatgaatagataaaagacagatgatggacagatagatgatagatggataaatagataaatgatagatgaatagataaatgatagatg
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  35408  97 -     38397 agatagataaatgatagatgaatagataaatgatagaggacggacagatagacgatagagggataaatagataaatgatagatgaatagataaataa------
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    33187  97 +     34961 agatagataaatgatagatgaatagataaatgatagaggacggacagatagacgatagagggataaatagataaatgatagatgaatagataaataa------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       437919  97 +  25972781 agatagataaatgatagatgaatagataaatgatagaggacggacagatagacgatagagggataaatagataaatgatagatgaatagataaataa------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       307556  78 -   1025902 agatagataaatgatagat-------------------gacggacagatagacgatagagggataaatagataaatgatagatgaatagataaataa------
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     239154  97 -    811265 agatagataaatgatagatgaatagataaatgatagatgatggacagatagacgatagagggatacatagataaatgatagatgaatagataaatga------
i chlSab2.chrUn_KE147541v1     I 35 C 0
s manLeu1.NW_012108508v1       284598  74 -    350446 -----------------------agataaatgatagatgatggacagatagacgatagagggataaatagataaatgatagatgaatagataaataa------
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e nomLeu3.chrX                  75369 425 + 141252148 M
e otoGar3.GL873584             336017   0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=663103.000000
s hg38.chrX_KI270880v1_alt     261615 184 +    284869 ggtagatagataaatgacagatggatagacagattaatgatagatgaataataaaagatagact----gataaatgatggagagatacataag--caataggtg----gatagatagataaatggtagatgggta-tttagat--------agataaa--tagataagtaa------cagatgaatagataac-tggtagatggacagataC
s panTro5.chrX                 446732 188 + 155549662 ggtaggtagataaatgacagatggatagacagattaatgacagatgaataataaaagatagattgatagataaatgatggagagatacataag--caataggtg----gatagatagataaatggtagatgggta-tttagat--------agataaa--tagataagtaa------cagatgaatacataac-tggtagatggacagataC
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 174360 188 -    177848 ggtagatagataaatgacagatggatagacagattaatgacagatgaataataaaagatagattgatagataaatgatggagagatacataag--caataggtg----gatagatagataaatggtagatgggta-tttagat--------agataaa--tagataagtaa------cagatgaatacataac-tggtagatggacagatac
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       339824 188 +    417917 ggtagatagataaatgacagatggatagacagattaatgatagatgaataataaaagatagattgatagataaatgatggagagatacataag--caataggtg----gatagatagataaatggtagatgggta-tttagat--------agataaa--tagccaagtaa------cagatgaatagataac-tggtagatggacagataC
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75800 197 + 141252148 gatggatagataaatgacagacggatagatagataaatgatagatgaataataaaagat----tgatagataaatgatggatagatacataaaacaaatagatg----gatagatagatagatgatagatGGGTATTTTAGATG-------GGATAAATTTGGATAAATAAGTTACCCGGAGGAATTGGTTACTTATTAGGGGGCCAGATTA
i nomLeu3.chrX                 M 425 C 0
s rheMac8.chrUn_NW_014831239v1  35505 190 -     38397 --tagatggataaatgacagatgggtagatagatccatgatagatgaataataaaagat----tgatagataaatgatggatagatacataaa--caatcgata----gatagacagatagatgctcgatgggta-tttagatgcatagatcgataaa--cagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i rheMac8.chrUn_NW_014831239v1 C 0 C 0
s macFas5.chrUn_AQIA01076778    33284 190 +     34961 --tagatggataaatgacagatgggtagatagatccatgatagatgaataataaaagat----tgatagataaatgatggatagatacataaa--caatcgata----gatagacagatagatgctcgatgggta-tttagatgcatagatcgataaa--cagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       438016 186 +  25972781 --tagatggataaatgacagatgggtagatcgatccatgatagatgaataataaaagat----tgatagataaatgatggatagatacataaa--caatcgata----gatagac----agatgctcgatgggta-tttagatgcatagatcgataaa--cagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       307634 190 -   1025902 --tagatggataaatgacagatgggtagatagatccatgatagatgaataataaaagat----tgatagataaataatggatagatatataaa--cattggatg----gatagatagatagatgttcgatgggta-tttagatgcatagatagataaa--cagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     239251 174 -    811265 --tagatggataaatgacagatgggtagctagatccatgatagatgaataataaaagat----tgatagataaatgatggatagatacataaa--cattggatg--------gatagatagatgttc-------------gatgcatagatagataaa--cagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       284672 182 -    350446 --tagatggataaatgacagatgggtagatagatccatgatagatgaataataaaagat----tgatagataaatgatggatagatatataaa--cattggatggatagatagatagatagatgttc-------------gatgcatagatcgataaa--tagacaagtaa------tagatgaacagatcgc-tgataggtggacagatag
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 380433  87 + 123869142 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=1532313.000000
s hg38.chrX_KI270880v1_alt     261799 371 +    284869 ATGCTA--GATTTCCAA-GCATATTTTCACATTTTCACCTTGGTTTCATAGGTCCT-GATATAAAA-CATATGCCTGGAGATCAA--TGTGCTTCG--AATTAGGAt---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAGGAGAGT-CCC----CATAGAACGTGGGAGGGGACCTGTTTAG----TGTTCAGAGCTTGCTG----------GAGAGGCTCCAGCATGACTCGT---------------------------TGCTGGATGCTAAACAGGTGGTCCCCCGAGAAAGACCTGGGTCTGGAGGT---GAGGGTTGC-----AGGGTTTATATGCCAGCAACAGAACAGGCGCTTCCTTGGAGAAGTATGTGTGAACCGGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT------GT
s panTro5.chrX                 446920 375 + 155549662 ATGCTA--GATTTCCAA-GCATGTTTTCACATTTTCACCTTGGTTTCCTAGGTCCT-GATATAAAA-CATGTGCCTGGAGATCAA--TGTGCTTCG--AATTAGGAt---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAGGAGAGT-CCC----CATAGAACGTGGGAGGGGACCTGTTTAGTGTTTGTTCAGAGCTTGCTG----------GAGAGGCTCCAGCATGACTCGT---------------------------TGCTGGATGCTAAACAGGTGGTCCCCCGAGAAAGACCTGGGTCTCGAGGT---GAGGGTTGC-----AGGGTTTATACGCCAGCAACAGAACAGGCGCTTCCTTGGAGAAGTATGTGTGAACCGGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT------GT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 174548 373 -    177848 ATGCTA--GATTTCCAA-GCATGTTTTCACATTTTCACCTTGGTTTCCTAGGTCCT-GATATAAAA-CATGTGCCTGGAGATCAA--TGTGCTTCG--AATTAGGAt---ttttttt--ctttttc-tttttttGCCCC---AGAAGGTTAGGAGAGT-CCC----CATAGAACGTGGGAGGGGACCTGTTTAGTGTTTGTTCAGAGCTTGCTG----------GAGAGGCTCCAGCATGACTCGT---------------------------TGCTGGATGCTAAACAGGTGGTCCCCCGAGAAAGACCTGGGTCTCGAGGT---GAGGGTTGC-----AGGGTTTATACGCCAGCAACAGAACAGGCGCTTCCTTGGAGAAGTATGTGTGAACCGGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT------GT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       340012 372 +    417917 ATGCTA--GATTTCCAA-GCATATTTTCACATTTTCACCTTGGTTTCATAGGTCCT-GATACAAAA-CATGTGCCTAGAGATCAA--TGTGCTTCG--AATTAGGAT---TTTTGTTTCTTGTTTCTTTTTTTTGCCCC---AGAAGGTTAGGAGGGT-CCC----CATAGAACGTGGGAGGGGACCTGTCTAG----TGTTCAGAGCTTGCTG----------GAGAGGCTCCAGCATGACTCGT---------------------------TGCTGGATGCTAAACAGGTGGTCCCCCGAGAAAGACCTGGGTCTGGAGGT---GAGGGTTGC-----AGGGTTTATACGCCAGCAACGGAACAGGCGCTTCCTTGGAGAAGTATGTGTGAACCGGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT------GT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  75997 373 + 141252148 CTTCCAAGGATTTCCAAGGTTTATTTCCACGTTTTCCCTTTCGTTTCTTAGTTCTTGGATATAAAACCATGTGCTGGAAAAACCAATTGTGCTTCGGAAATTAGGAtttatttttttttctttttc-tctttttGCCCC---AGAAGGTTAGGAGAGT-CCC-ATGAATAGAACGTGTGAGGGGACCTGTTTAG----TGTTTGGAGCTGGCTG----------GAGAGGCTCCAACATGACTCGT---------------------------TGCTGGATGCTAAACAGGTGGTCCCCAGAGAAAGACCTGCGTCTGGAGGT---GAGGGTT------------------GCCAGCAACCAAACAGGCGCTTCCTTGGAGAAGTATGTGTGAACCGGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT------GT
i nomLeu3.chrX                 C 0 C 0
s rheMac8.chrUn_NW_014831239v1  35695 404 -     38397 atacTA--GATTTCCAA-GCATATTTTCGCATTTTCATCTTGGTTTCATAGGTTCT-GATAGAAAA-CACGTGCCTGGAGACCAA--TGTGCTTCG--AATTAGGAC---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAAGAGAGT-CCC-ATGAATGGAACGTGGGAGGGGACCTGTTTAG----TGTTTGGAGCTGGCTGTTTAGTGTTAGAGAGGCTTCACCACGACTCGTTGAAAATCAGAAAAGGGACGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGGAGGT---GAGGGTTGC-----AGGGTTGATGTGCAAGCAGCAAGACAGGGGCTTATTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTTGT------
i rheMac8.chrUn_NW_014831239v1 C 0 I 6
s macFas5.chrUn_AQIA01076778    33474 402 +     34961 ataCTA--GATTTCCAA-GCATATTTTCGCATTTTCATCTTGGTTTCATAGGTTCT-GATAGAAAA-CACGTGCCTGGAGACCAA--TGTGCTTCG--AATTAGGAC---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAAGAGAGT-CCC-ATGAATGGAACGTGGGAGGGGACCTGTTTAG----TGTTTGGAGCTGGCTGTTTAGTGTTAGAGAGGCTTCACCACGACTCGTTGAAAATCAGAAAAGGGACGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGGAGGT---GAGGGTTGC-----AGGGTTGATGTGCAAGCAGCAAGACAGGTGCTTATTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT--------
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       438202 402 +  25972781 ataCTA--GATTTCCAA-GCATATTTTCGCATTTTCATCTTGGTTTCATAGGTTCT-GATAGAAAA-CACGTGCCTGGAGACCAA--TGTGCTTCG--AATTAGGAC---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAAGAGAGT-CCC-ATGAATGGAACGTGGGAGGGGACCTGTTTAG----TGTTTGGAGCTGGCTGTTTAGTGTTAGAAAGGCTTCACCACGACTCGTTGAAAATCAGAAAAGGGACGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGGAGGT---GAGGGTTGC-----AGGGTTGATGTGCAAGCAGCAAGACAGGTGCTTATTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT--------
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       307824 375 -   1025902 atgcta--gattTCCAA-GCATATTTTTGCATTTTCATCTTTGTTTCATAGGTCCT-GATAGAAAA-CATGTGCCTGGAGACCAA--TGTGCTTTG--AATTAGGAA---T--------TTTTTTC-TTTTTGTGCCCC---AGAAGGTTAGGAGAGT-CCC-ATGAATGGAACGTGGGAGGGGAC-------------------------CTGCTTAGTGTTAGAGACGCTCCACCACGACTCGTTGAAAATCAGAAAAGGGACGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGCAGGT---GAGGGTTAC-----AGGGTTGATGTGCAAGCAGCAAGACAGGTGCTTATTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT--GT----
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     239425 404 -    811265 atacta--gatTTCCAA-GCATATTTTCGCATTTTCATCTTGGTTTCATAGGTCCT-GATAGGAAA-CACGTGCCTGGAGACCAA--TGTGCTTCC--AATTAGGAt---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAGGAGAGTCCCC-ATGAATGGAACGTGGGAGGGGACCTGTTTAG----TGTTCTGAGCTGGCTGTTTAGTGTCAGAGACGCTCCACCGCGACTTGTTGAAAATTAGAAGAGGGATGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGGAGGT---GAGGGTTGC-----GGGGTTGATGTGCAAGC-GCAAGACAGGTGCTTCTTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT----GT--
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       284854 383 -    350446 atacTA--GATTTCCAA-GCATATTTTCGCATTTTCATCTTTGCTTCATAGGTCCT-GATAGAAAA-CACGTGCCTGGAGACCAA--TGTGCTTCG--AATTAGGAC---ttttttttcttttttc-tttttttGCCCC---AGAAGGTTAGGAGAGT-CCC-ATGAATGGAACGTGGGAGGGGAC-------------------------CTGTTTAGTGTCAGAGACGCTCCACCACGACTCTTTGAAAATCAGAAAAGGGACGTAGCATCTGCTGGATGCTAAACAGGTGGTCCCCAGAGAA-------GGTCTGGAGGT---GAGGGTTAC-----AGGGTTGATGTGCAAGCAGCAAGACAGGTGCTTATTTGGAGAAGTACGTGTGAACCAGTCGCCCTCCCCACCTAAAGGTGTTCTGGGTTTGAGGAGGTT----GT--
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 380346 354 + 123869142 ATGCTG--GGTTTGCCA-GGGCATTCTCACGTTTTCACCTCGGTGTCACAGGTCCT-GACGCAAAA-CATGTGTGTGGAGATAAA--TGTGCTTCC--AATCACGCA------------TTTCTTC---------CCCCAGAAGAAGGTGAAGAGGGG-CCCCACGGATGGAACGTGTCAGGGGGCCTGTTCAG----TGTTTGGAGCTGGCGG----------GAGAGGCCCCGAGATGCCCTGCTGCTCTCTCAGGAAGGGGCCCAGCGCCCGCTCAGCGGTGA----------CCCAGGGAGGGCTGTGGGGCTGGGGGCAGAGAGGGCCGTGGGAGGGGGGTTAGAGTCAAGC----------------CCATGGGGGAGGATGTGTGA----------------GCACACATGTGGTCTGGGTTGAAGGGTGCT------GT
i canFam3.chrX                 T 87 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=178611.000000
s hg38.chrX_KI270880v1_alt     262170 94 +    284869 CAGTGGTGACCGTATGACCCCAAAAGTCAAACAGAATAATGCGCTTTATCCTTCCTTCTGCTTTAGGGAGGAGAATGTTTGCAGCAGTTCTTGT
s panTro5.chrX                 447295 94 + 155549662 CAGTGGCGACCGTATGACCCCAAAAGTCAAACAGAAGAATGTGCTTTATCCTTCCTTCTGCTTTAGGGAGGAGAATGTTTGCAGCAGTTCTTGT
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 174921 94 -    177848 CAGTGGTGACCGTATGACCCCAAAAGTCAAACAGAAGAATGTGCTTTATCCTTCCTTCTGCTTTAGGGAGGAGAATGTTTGCAGCAGTTCTTGT
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       340384 94 +    417917 CAGTGGTGACCGTATGACCCCAAAAGTCAAACAGAAGAATGTGCTTTATCCTTCCTTCTGCTTTAGGGAGGAGAGTGTTTGCAGCAGTTCTTGT
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  76370 94 + 141252148 CCGTGGTGACCGTATGACCCCAAAAGTCAAACAGAAGAAATTGCCTTATCCTTTCTTCTGCTTTAGGGAGGCGAATGTTTGCAGCAGTTCTTGC
i nomLeu3.chrX                 C 0 C 0
s macFas5.chrUn_AQIA01076778    33876  8 +     34961 --------------------------------------------------------------------------------------GTTCTTGC
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       438604  8 +  25972781 --------------------------------------------------------------------------------------GTTCTTGC
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       308199 94 -   1025902 CAGTGGTGACCGTGTGGCCCCAAGAGTCGAAGAGAAGAATGTGCTGCATCCTTTGTTCTGGTTTAGGGAGGCAAATGTTTGCAGCAGTTCTTGC
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     239829 69 -    811265 CAGTGGTGACCGTGTGGCCCCAAGAGTCAAACAGAAGAATGTGCT-------------------------GCGAATGTTTGCAGCGGTTCTTGC
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       285237 94 -    350446 CAGTGGTGACCGTGTGGCCCCAAGAGTCGAAGAGAAGAATGTGCTGCATCCTTTGTTCTGGTTTAGGGAGGCGAATGTTTGCAGCAGTTCTTGC
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 380700 93 + 123869142 GGGTGCTGAGCATCTGGTCCTCAAAGTCAGACA-AGCAGTTTGCTTTGTCCTCTGTTTGGCTCTAATGAGGCAAAGATTTCCAGCAGCTTTCGT
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017  0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36099  6 -     38397 I

a score=2146527.000000
s hg38.chrX_KI270880v1_alt     262264 541 +    284869 TAATTCATGAAGCATATGA-------------------CTAATTGCATCAAGGATGAAACAAGGTAGGTAGGT----------------------------------------AG-------------------GTAGACAGTTAAGTATGCACATGCATATGTAcatagatggcagatagatgggtaatagatcaatggc----agatagataaatagatgc-tggatagagagagagatagac-gatgaatagagagatagatgatggat--agagagagagggatacatagatagatgat--------tgattgattgattgattgattgat---gagatagatacatggataaaagagccatacacattacagtgtgtatacatgcagagatagac-gataga------cataggt-agtatgtagatagataggcagatagatgatagatgatggatagacagg-agatagagagataaatgc-tagatagagagacaaagagatagagatagata-acggatagatagatgaggtacatagacgtagataaatagatag-ctaataggtagatagat----------------------------aatagatgattgatggataatagatagataggtagataaacagatcataggtaggtagataatagat
s panTro5.chrX                 447389 539 + 155549662 TAATTCATGAAGCATGTGA-------------------CTAGTTGCATCAAGGATGAAACA----AGGTAGGT----------------------------------------AG-------------------GTAGACAGTTAAGTATGCACATGCATATGTAcatagatggcagatagatgggtaatagatcaatgccagatagatagataaatagatgc-tggat----agagagatagat-gatgaatagagagatagatgatggatagagagagagagggatacatagatagatgat--------tgattgattgattgattgattgat---gagatagatacatggataaaagagccatacacattacggtgtgtatacatgcagagatagac-gataga------cataggt-agtatgtagatagataggcagatagatgatagatgatggatagacagg-agatagagagataaatgc-tggatagagagacaaagagatagagatagata-atggatagatagatgaggtacatagatgtagataaatagatag-ctaataggtagatagat----------------------------aatagatgattgttggataatagatagataggcagataaacagatcataggtaggtagataatagat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 175015 531 -    177848 TAATTCATGAAGCATGTGA-------------------CTAGTTGCATCAAGGATGAAACAAGGTAGGTAGGT----------------------------------------AG-------------------GTAGACAGTTAAGTATGCACATGCATATGTACATAGATGGCagatagatgggtaatagatcaatgccagatagatagataaatagatgc-tggat----agagagatagat-gatgaatagagagatagatgatggatagagagagagagggatacataga----------------tgattgattgattgattgattgat---gagatagatacatggataaaagagcgatacacattacggtgtgtatacatgcagagatagac-gataga------cataggt-agtatgtagatagataggcagatagatgatagatgatggatagacagg-agatagagagataaatga-tggatagagagacaaagagatagagatagata-atggatagatagatgaggtacatagatgtagataaatagatag-ctaataggtagatagat----------------------------aatagatgattgatggata----atagataggcagataaacagatcataggtaggtagataatagat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       340478 529 +    417917 TAATTCATGAAGCACGTGA-------------------TTAGTTGCATCAAGGATGAAACAaggtaggtaggt----------------------------------------ag-------------------gtagacagttaagtatgcacatgcatatatacatagatggcagatagatgggtaatagatcaatgcc----agatagataaatagatgc-tggatagagagatagatagac-gatgaatagagagatagatgatggat--agagagagagggatacatagacaga----------------tgattgattgattgattgat---gagatagatacatgcataaaagagccatacacattacggtgtgtatacatgcagagatagac-gataga------gataggt-agtatgtagatagataggtagatagatgatagatgacggatagacagg-agatagagagataaatgc-tggatagagagacaaagagatatagatagata-atggataggtagatgaggtacacagatgtagataaatagatag-ctaataggtagatagat----------------------------aatagatgattgatggata----atagataggtagataaacagatcataggtaggtagataatagat
i gorGor5.CYUI01015925v1       C 0 C 0
s nomLeu3.chrX                  76464 540 + 141252148 TAATTCGTGTAGCATGTGA-------------------CTAGTTGCATCAGAGATGAAACAGGGtaggtagct----------------------------------------ag-------------------gtagacagttaagtatgtacatacatatatacatagatggcagatagacagggaatagatcaatgcc----ggatagataaatagatgc-tggatagagagatagatagac-gatgaatagagagataggtgatggat--agagagagagggatacgtagatagatgat--------tgattgattgactgatcgattgat--agaggtggatacattgatacaagagccatacacattaaggtgtatatacatgcagagatagac-gataga------gatagat-attatgtagatagataggtagatagatgatag-------------------------------atgc-tggatagagagacaaagagatagagatagata-atggatagatagatgaggtacatagatgtagataaatagatag-ctaatagatagatagatagatagatagatagatagatagatagaaaatagatgattgatggataatagatagaaatgtagataaacacatcatacgtaggtagataatagat
i nomLeu3.chrX                 C 0 N 0
s rheMac8.chrUn_NW_014831239v1  36105 576 -     38397 TAATTCATGCAGCATGTGA-------------------CTAGTTGCATCAGGGATGAGACAGGGTAGGTAGGTGTGTACATACCTACCTACTTACCTAGTAGCACGTAGT---AGTAGGCTACCTACCTAGTATGTACATAGTTAAGTATGTACataaatatatacatagatggtagattggtaggtaatagatcaatggc----ggatagataaatagatac-tggatagagagagagatagac-gatgaagagagaaatagatgatggat--agagagagagggatacatagatagatgactgac----tgattgattgattgattgattgat--agagatagatacatgaatacaagagccgtacacatgaaggtgtgcttacatgcagagatagat-gataga------gatagat-attatg----tagataggtagatagaggagagatgatggatagagagg-agatagagagataaatgc-tggatagagagacagagagatagagatagata-atggatagatagctgcggtacataggtgtagatagataga-----taataggtagata---------------------------------------------ggataatagat-gataggtagataaacagatgataggtaagtagataatagat
i rheMac8.chrUn_NW_014831239v1 I 6 C 0
s macFas5.chrUn_AQIA01076778    33884 571 +     34961 TAATTCATGCAGCATGTGA-------------------CTAGTTGCATCAGGGATGAGACAGGGTAGGTAGGTGTGTACATACCTACCTACTTACCTAGTAGCACGTAGT---AGTAGGCTACCTACCTAGTATGTACATAGTTAAGTATGTAcataaatatatacatagatggtagataggtaggtaatagatcaatggc----ggatagataaatagatac-tggatagagagagagatagac-gatgaagagagaaatagatgatggat--agagagagagggatacatagatagatgactgac----tgattgattgattgattgattgat--agagatagatacatgaatacaagagccgtacacatgaaggtgtgcttacatgcagagatagat-gataga------gatagat-attatg----tagataggtagacagaggagagatgatggatagagagg-agatagagagataaatgc-tggatagagagacagagagatagagatagata-atggatagatagggg-----cataggtgtagatagataga-----taataggtagata---------------------------------------------ggataatagat-gataggtagataaacagatgataggtaagtagataatagat
i macFas5.chrUn_AQIA01076778   C 0 C 0
s macNem1.NW_012017243v1       438612 580 +  25972781 TAATTCATGCAGCATGTGA-------------------CTAGTTGCATCAGGGATGAGACAGGGTAGGTAGGTGTGTACATACCTACCTACTTACCTAGTAGCACGTAGT---AGTAGGCTACCTACCTAGTATGTACATAGTTAAGTATGTAcataaatatgtacatagatggtagataggtaggtaatagatcaatggc----ggatagataaatagatac-tggatagagagagagatagac-gatgaagagagaaatagatgatggat--agagagagagggatacatagatagatgactgactgattgattgattgattgattgattgat--tgagatagatacatgaatacaagagccgtacacatgaaggtgtgcttacatgcagagatagat-gataga------gatagat-attatg----tagataggtagacagaggagagatgatggatagagagg-agatagagagataaatgc-tggatagagagacagagagatagagatagata-atggataggtaggtgcggtacatagatgtagatagataga-----taataggtagata---------------------------------------------ggataatagat-gataggtagataaacagatgataggtaagtagataatagat
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       308293 597 -   1025902 TAATTCATGCAGCATGTGG-------------------TTAGTTGCATCAGGGATGAGACAGGGTAGGTAGGTGTGTACATACCTACCTACTTACCTAGTAGTACGTAGTAGCAGTAGGCTACCTACCTAGTATGTACATAGCTAAGTATGAACATAGATATATACATAGATGGTAGATAGATAGGTAATAGATCAATGGC----GGGTAGATAAATAGATAC-TGGATAGAGAGAGAGATAGAC-GATGAAGAGAGAAATAGATGAGGGAC--AGAGAGAGAGGGAAACATAGATAGATGACtgat----tgattgattgattgattgattgat--AGAGATAGATACGTGAATACAAGAGCCCTACACATGAAGGTGTGCTTACATGCAGagatagac-gataga------gatagac-attatgtagatagataggcagatagaggatagatcatggatagacagg-agatagagagataaatgc-tggacagacaaatagagagatagagatagata-atggatagataacgg---tacatagatgtagatagataga-----taataggtagatacat----------------------------aatacatgactgatggataatagat-gataggtagataaacagatgataggtaggtagatactagat
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     239898 600 -    811265 TAATTCATGCGGCATGTGG-------------------CTAGTTGCATCAGGGATGAGACAGGgtaggtaggtgtgtacatacctacctacttacctagtagtacgtagtagtagtagcctacctacccagtatgtacatagctaagtatgtacatagatatatacatagatggtagataggtaggtaatagatcaatggc----ggatagataaatagatac-cggagagagagagagatagac-gatgaagggagaaatagatgatggat--agagagagagggatacatagatagatgatggat----tcattgattgattgattgattgat--agagatagatacatgaatacaagagccatacacatgaaggtgtgcttacatgcagagatagac-gataga------gacagat-tttatgtagatggataggtagatagaggatagacgatggatagagagg-agatagagagataaatgc-tggatagagagacagagagatagagatagata-atggatagataggtgcggtacacagatgtagatagataga-----taataggtagatacat----------------------------aatacctgattgatggataatagat-gataggtacataaacagatgataggtaggtagataatagat
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       285331 592 -    350446 TAATTCATGCAACATGTGA-------------------CTAGTTGCATCAGGGATGAGACAGGGTAGGTAGGTGTGTACATACCTACCTACTTACCtagtagtacgtagtagtagtagGCTACCTACCTAGTATGTACATAGCGAAGTATGAACatagacatatacatagatggtagatagataggtaatagatcaatggc----ggatagataaatagatac-tggatagagagagagatagac-gatgaagagagaaatagatgatggac--agagagagggggatacatagatagatg------------attgattgattgattgattgat--tgagatagatacgtgaatacaagagccgtacacatgaaggtgtgcttacatgcagagatagat-gataga------gatagat-attatgtagatagataggtagataaaggatagatgatggatagacagg-agatagagagataaatgc-tggacagacaaatagagagatagagatagata-atggatagataagtgcggtacacagatgtagatagataga-----taataggtagatacat----------------------------aatacatgattgatggataatagat-gataggtagataaacagatgataggtaggtagatactagat
i manLeu1.NW_012108508v1       C 0 C 0
s canFam3.chrX                 380793 488 + 123869142 TAAGTTGTGTAGCATGTGGTAGCAACAAAAGGTTAAGTTTTGCAGTATTGGGGATGGAAAAG---AGGGAGAC----------------------------------------AA-------------------GCACACAG--------------GCGGATTCACAGATATTATTgatagatagat------------------agatagatgaatagatacgtagatggatgggtggatggatggatggatggatggatagacagatagc--atacatggatgaacatacggatggatagct-------tgatcgatcaatgcattgatacatgcatggatggatgaatggatggatggacag--------atagaatagatgcatggatcaatagactgatggatcgatgaatggatcaatagattgatggatggatggatggatg------gatggatggatggatagatggacggatgaatacatggatggatagacggacagataga-attgatatatggatggattgatg---------------gatgaatggatcgatcaatacatagatgcat---------------------------------------------taatgaatggatggatggacaaatagaatacatgcatg------------
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=119915.000000
s hg38.chrX_KI270880v1_alt     262805 29 +    284869 gattgatagataatagatagat-gatagat
s panTro5.chrX                 447928 29 + 155549662 gattgatagataatagatagat-gatagat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 175546 29 -    177848 gattgatagataatagatagat-gatagat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       341007 29 +    417917 gattgatagataatagatagat-gatagat
i gorGor5.CYUI01015925v1       C 0 C 0
s rheMac8.chrUn_NW_014831239v1  36681 29 -     38397 gattgatagacaatagatagat-gatagat
i rheMac8.chrUn_NW_014831239v1 C 0 n 0
s macFas5.chrUn_AQIA01076778    34455 29 +     34961 gattgatagacaatagatagat-gatagat
i macFas5.chrUn_AQIA01076778   C 0 I 8
s macNem1.NW_012017243v1       439192 29 +  25972781 gattgatagacaatagatagat-gatagat
i macNem1.NW_012017243v1       C 0 I 539
s cerAty1.NW_012001098v1       308890 29 -   1025902 gattgatagacaatagatagat-gatagat
i cerAty1.NW_012001098v1       C 0 I 4
s chlSab2.chrUn_KE147541v1     240498 29 -    811265 gattgatagacaatagatagat-gatagat
i chlSab2.chrUn_KE147541v1     C 0 I 1122
s manLeu1.NW_012108508v1       285923 29 -    350446 gattgatagacaatagatagat-gatagat
i manLeu1.NW_012108508v1       C 0 I 4
s canFam3.chrX                 381281 26 + 123869142 gatggat---taatggatagatcaatcaa-
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017  0 +  11138919 C
e colAng1.NW_012115411v1       426512 7495 +   1230721 I

a score=78784.000000
s hg38.chrX_KI270880v1_alt     262834 59 +    284869 taaataggtagatgatag----a-tgataggt-agataataggtagatga--------taga-tagctagatag
s panTro5.chrX                 447957 71 + 155549662 taaataggtagatgatagatata-tgataggt-agataataggtagatggtagatagctaga-tagctagatag
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 175575 71 -    177848 taaataggtagatgatagatata-tgataggt-agataataggtagatggtagatagctaga-tagctagatag
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       341036 63 +    417917 taaatgggtagatgatagataga-tgataggt-agataataggtagatga--------taga-tagctagatag
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    34492 48 +     34961 tagataggaagatgatagataaa-tgagaggt-aggtaatagataggtag------------------------
i macFas5.chrUn_AQIA01076778   I 8 C 0
s cerAty1.NW_012001098v1       308923 64 -   1025902 tagataggaagatgatagataaa-tgagaggt-aggtaataggtagatga--------tagattagctagatag
i cerAty1.NW_012001098v1       I 4 I 541
s manLeu1.NW_012108508v1       285956 64 -    350446 tagataggaagatgatagataaa-tgataggt-aggtaataggtagatga--------tagattagctagatag
i manLeu1.NW_012108508v1       I 4 I 13223
s canFam3.chrX                 381307 47 + 123869142 ttgatggatcgatga---atgtattgataggtcaattgatggatggatgg------------------------
i canFam3.chrX                 C 0 C 0
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=202100.000000
s hg38.chrX_KI270880v1_alt     262893 326 +    284869 atgatagatagataggc-agatagatagatggt----agacag-atagatg-atagacagatagat-----gatagatagatatatagacagatatatagatagctagatagatgatagatagctagatagctagatagatgataga--------tagataggcaaatagct--------agatgatagac----agatgatagatagatatatagacagatatatagatagatagctagat-agatgatagatagat---------------agatagatgatagatatatagacagata---tatagatagatagctagatagat----gatagatagatagatgatagacagaga----atagat--agatatatagacagata
s panTro5.chrX                 448028 323 + 155549662 atgatagacagataggc-agatagatagatgatagacagacag-atagatg-atagacagatagat-----gatagatagatatatagacagatat-------------------atagatagctagatagctagatagatgataga--------tagataggcagatagat----agacagatgatagacagatagatgatagatagatatatagacagatatatagatagatagctagtt-agatgatagatagat----------------gata---gatagatatatagacagata---tatagatagatagctagatagatgatagatagatagatagatgatagacagatagatgatagat--agatatatagacagata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 175646 327 -    177848 atgatagatagataggc-agatagatagatgatagacagacag-atagatg-atagacagatagat-----gatagatagatatatagacagatat-------------------atagatagctagatagctagatagatgataga--------tagataggcagatagat----agacagatgatagacagatagatgatagatagatatatagacagatatatagatagatagctagtt-agatgatagatagat---------------agatgatagatagatatatagacagata---tatagatagatagctagatagatgatagatagatagatagatgatagacagatagatgatagat--agatatatagacagata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       341099 334 +    417917 atgatagatagataggc-----agatagatgatagacagacag-atagatg-atagatatatagaca----gatatatagatagctagatagatg--------------------atagatagctagatagctagataaatgataga--------tagataggcagatagatagatagatagatgatagacagatagatgatagatagatatatagacagatatatagatatatagatagat-agatgatagatagatagatgatagacagatagatgatagatagatatatagacagata---tatagatagatagctagatagatgatagatagatagatagatgatagagg--------atagat--agatatatagacagata
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    34540 306 +     34961 atgatagatagattagctagataggtagat--------gacag-atagatg-ataggtagatagac------------agata-ataggtagatg--------------------atagacagataggtagatagataaatggtagacgggtatttagatggatagatagataaatggataaatactagatgaatagataactgataggtggacatagagataaat-----gatagatggat-agataaaagataaat---------------aaataatagatggatcaataaatag--------taaatgaatagatagataaatcatagatgggtagataaaagatagataaata----atagat--ggatagaaaaatag---
i macFas5.chrUn_AQIA01076778   C 0 C 0
s canFam3.chrX                 381354 297 + 123869142 atgatggat---------gaatggatagatgatggatagatagaatcgatgtatggatggatCAATCAATTAATGGATCGATGAATGTACTGATAG-------------------GCCAATTgatgcatggatggatagatgatgga--------tgaatacgtggatggtt----aaataga---------------------atcgatgtatggatggattgatgggtggatggatggatcagtcaatgaatggat---------------cgatg---gatggatgcatcgatcaatagtgcattaatgaatggatggata-------ggtagatagatagatgATAGACAGTTG----GTAGATCAAGCCATGGAGGCAAACA
i canFam3.chrX                 C 0 I 14
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=68089.000000
s hg38.chrX_KI270880v1_alt     263219 134 +    284869 tataga----tagatagctagatagatgat--------aggta-----------gatagatagatgatagatagatgatagatagatatatagac--atatatagatagct--------------------------------------agatagatgatagatagat---------------------------------------agatagatagatagatagatagatagata
s panTro5.chrX                 448351 147 + 155549662 tatagatagctagatagctacatagatgatagataggcagata-----------gatagatagatgatagacagatagatgatagatatatagacagatatatagatagat--------------------------------------agatagatgatagatagat----------------------------------------gatagatagatatatagacagatatata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 175973 147 -    177848 tatagatagctagatagctagatagatgatagataggcagata-----------gatagatgatagacagatagatgatagatagatatatagacagatatatagatagat--------------------------------------agatagatgatagatagat----------------------------------------gatagatagatatatagacagatatata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       341433 232 +    417917 tataga----tagatagctagatagatgataggtagatagatagatagatagatgatagatagatgatagatagatgatagatagatatatagacagatatatagatagatagctagatagatgataggtagatagatagatgatagacagatagatgatagatagatagatagatacatacatacatagatagctagatagatgacagatagatagatagatagatagatagata
i gorGor5.CYUI01015925v1       C 0 C 0
s macFas5.chrUn_AQIA01076778    34846 115 +     34961 ----------taaataaaaagataaatgataaatgggtagata-----------gatggatagataagtgatagata--------acacatagatagatacatagatagat--------------------------------------agatg------------------------------------------------------gatagatagatagatagatagatagata
i macFas5.chrUn_AQIA01076778   C 0 N 0
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=7425.000000
s hg38.chrX_KI270880v1_alt     263353 15 +    284869 gatagacagatagat
s panTro5.chrX                 448498 15 + 155549662 gatagatagatagat
i panTro5.chrX                 C 0 I 736
s panPan2.chrUn_NW_014024190v1 176120 15 -    177848 gatagatagctagat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       341665 15 +    417917 gatagatagatagat
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=846.000000
s hg38.chrX_KI270880v1_alt     263368 3 +    284869 aga
s panPan2.chrUn_NW_014024190v1 176135 3 -    177848 aga
i panPan2.chrUn_NW_014024190v1 C 0 I 684
s gorGor5.CYUI01015925v1       341680 3 +    417917 aga
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017 0 +  11138919 C
e panTro5.chrX                 448513 736 + 155549662 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710 0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=34340.000000
s hg38.chrX_KI270880v1_alt     263371 461 +    284869 atatcaatttgttcttgcattgctataaagcaatacctgagcctgggtaatttataaagaaaagaggttgaattggctcatggttctgcaggctgtacaagaagcccagtggcttgggcttctgaggaggcctcaggaaacttataggcaaaggggaaacaggtacgtcttacattgctggagtaagaggagaggcgggggaggtgccacacacttgtaatcaaccagatcgcgtgagaactctagcagaagaacagcgccaaagggatggtcctaaaccactcttgaggggcccacccccacgatccaatcacctctccccaggcctaaaccactcctgaggggcccacccccacgatccaatcacctctcaccaggccccacctcc-aacattggggattacaattcagcatgcgatttgggcagggacacagatccaaaccctattagatagatagatt
s gorGor5.CYUI01015925v1       341683 408 +    417917 Atatcaatttgttcttgcattgctataaagcaatacctgagcctgggtaatttataaaggaaagaggttgaattggcttatggttctgcaggctgtacaagaagcccagtggcttgggcttctgaggaggcctcaggaaacttctaggcaaaggggaaacaggtacgtcttacattgctggagtaagaggag-ggcgggggaggtgccagacactcgtaatcaatcagatcgcgtgagaactctagcagaagaacagcaccaaagggatggt-----------------------------------------------------cctaaaccactcctgaggggcccacccccacgatcaaatcacctctcaccaggccccacctccaaacattggggattacaatccagcatgcgatttgggcagggacgcagacccaaaccctattagatagatagatt
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e panTro5.chrX                 448513 736 + 155549662 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e panPan2.chrUn_NW_014024190v1 176138 684 -    177848 I

a score=0.000000
s hg38.chrX_KI270880v1_alt     263832 190 +    284869 aatgatagatggatagatagatagatgattgatggatacatagataaatgatagatggatagataaatgatagagggataaatagatgatagatggatagatagatgattgatggatagatggataaatgatagatggatagataatgattgatggatatatagataatgattgatggatagataaatga
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336017   0 +  11138919 C
e panTro5.chrX                 448513 736 + 155549662 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091   0 +    417917 C
e panPan2.chrUn_NW_014024190v1 176138 684 -    177848 I

a score=333.000000
s hg38.chrX_KI270880v1_alt     264022 13 +    284869 tggatagataaat
s otoGar3.GL873584             336017 13 +  11138919 tggctatgtatgt
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e panTro5.chrX                 448513 736 + 155549662 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091  0 +    417917 C
e panPan2.chrUn_NW_014024190v1 176138 684 -    177848 I

a score=16490.000000
s hg38.chrX_KI270880v1_alt     264035 160 +    284869 -gatagatggataaatagatgatagatggatagatagatgattgatggatagatggataaatgataga------------tggataaatagatgatagatggata--------ga---tagatgatagatggatagatgg-ataaatgatagatggatagataatgattgatggatatatagat------------a
s panTro5.chrX                 449249 172 + 155549662 -gatagatggatagatagatgattgatggatacatagataaatgatagatggatagataaatgataga------------tggataaatagatgatagacggata--------ga---tagatgattgatggatagatgg-ataaatgatagatgcatagataatgattgatagatagataaatgatggatagataa
i panTro5.chrX                 I 736 C 0
s otoGar3.GL873584             336030 176 +  11138919 ataaaggtacataggtgggtagtagatgggta-atagatcagtgatgg-taaagaaatagataatagaaacctacagatgtagatgaatggatg---gacgggtaTCTACCATGACTCTAAAAGATAGA--GATAGATTACACAGATGACAGCTAGCTAGTTAAagataggtagatatagata--------------
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091   0 +    417917 C
e panPan2.chrUn_NW_014024190v1 176138 684 -    177848 I

a score=77195.000000
s hg38.chrX_KI270880v1_alt     264195 245 +    284869 atgattgatggata---------------gatagataaatggtagatggatagataaatgatagatggataaatagatgatagacggatagatagatgattgatggatagatggataaat-gatagatggatagataatgattgatggatatatagataatgattgatggatagatagataaatggtagatggatagataaatgatagatggataaatagatgatagacggatagatagatgattgatggatagatggata
s panTro5.chrX                 449421 256 + 155549662 atgatagatggataaatagatgatagatggatagatagatgacagatggatagataaatgatagatgggtaaatagatgatagacgaatagatagatgatagatggatacatggataaat-gatagatggatagataatgattgatggatatatagataatgattgatggatagata----aatgatagatggatagataaatgatagatggataaatagatgatagatggatagatagatgattgatggatagatggata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 176822 219 -    177848 atgattgatggata---------------catagataaatgatagatggatagataaatgatagatggataaatagatgatagacggatagatagatgattgatggatagatggataaat-gatagatg----------------------catagataatgattgatggatagata----aatgatagatggatagataaatgatagatggataaatagatgatagatggatagatagatgattgatggatagatggata
i panPan2.chrUn_NW_014024190v1 I 684 C 0
s otoGar3.GL873584             336206 193 +  11138919 --gttacatagata---------------gatagatgatagGGAAATGAAT-GATAGGTACtagatggatgggtagat-atagatagataggtagatg---gatggatggatggatagatagatagata----------------------gatagatag-----gatggatagata-------gatagatagatagata------ggatggatagata---gatagatagatagacagatga---atagatagatagata
i otoGar3.GL873584             C 0 I 173
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091   0 +    417917 C

a score=15595.000000
s hg38.chrX_KI270880v1_alt     264440 72 +    284869 aatgatagatggatagataatgaatgatggatagataaat-------gatagatggatagataaatgatagatggataa
s panTro5.chrX                 449677 75 + 155549662 aatgat----ggatagataatgattgacggatatatagataatgattgatggatagatagataaatgatagatggataa
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177041 75 -    177848 aatgat----ggatagataatgattgacggatatatagataatgattgatggatagatagataaatgatagatggataa
i panPan2.chrUn_NW_014024190v1 C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             336399 173 +  11138919 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091  0 +    417917 C

a score=34203.000000
s hg38.chrX_KI270880v1_alt     264512 104 +    284869 atagatgatagatggataga--------taga---taattgatggatagat-----------ggataaatgatacatggatagataatgattgacggatagatagataatgattggtggatagata
s panTro5.chrX                 449752 104 + 155549662 atagatgatagatggataga--------taga---taattgatggatagat-----------ggataaatgatacatggatagataatgattgacggatagatagataatgattggtggatagata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177116 104 -    177848 atagatgatagatggataga--------taga---taattgatggatagat-----------ggataaatgatacatggatagataatgattgacggatagatagataatgattggtggatagata
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             336572 119 +  11138919 ATATTTAACAAATGCATAGAAATCCTGCTAGGGCTTATTTTTTGGGTAGGTCTTATTTTGGGGGAAACACAGtagatagacaggaaa-----gacggatggatggata--gatggaaggatagatg
i otoGar3.GL873584             I 173 C 0
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I
e gorGor5.CYUI01015925v1       342091   0 +    417917 C

a score=210170.000000
s hg38.chrX_KI270880v1_alt     264616 349 +    284869 aatgatagatg----gatagatagatgattgatggatagatagataaatgatagatggatagatagatgggtagatagatatataaatgataggtagataaatgatagatgaacatataaatgattgatagatggatagataaatgatagatgaatagataaatgatggatagacacataatagatggataga----aagatagataaatgatagatgggtatttagatggatagatagataaatagataaataatagatggacagataactgatagttgggcagatagataaatgatcgatggatagataaaagatagataaataaataatagatagatcaataaatagtaaatga
s panTro5.chrX                 449856 353 + 155549662 aatgatagatg----gatagatagatagatgattgatggatagataaatgatagatgcatagatagatgggtagatagatatataaatgataggtagataaatgatagatgaatatataaatgattgatagatggatagataaatgatagatgaacagataaatgatggatagacacataatagatggatagatagaaagatagataaatgataggtgggtatttagatggatagatagataaatagataaataatagatggacagataactgatagttgggcagatagataaatgatcaatggatagataaaagatagataaataaataatagatagatcaataaatagtaaatga
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177220 357 -    177848 aatgatagatggatagatagatagatgattgatggatagatagataaatgatagatgcatagatagatgggtagatagatatataaatgataggtagataaatgatagatgaatatataaatgattgatagatggatagataaatgatagatgaacagataaatgatggatagacacataatagatggatagatagaaagatagataaatgatagacgggtatttagatggatagatagataaatagataaataatagatggacagataactgatagttgggcagatagataaatgatcaatggatagataaaagatagataaataaataatagatagatcaataaatagtaaatga
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342091 345 +    417917 aatgatagatg----gatagatagatgattgatggatagatagataaatgatag----atagatagatgggtagatagatatataaataataggtagataaatgatagatgaatatataaatgattgatagatggatagataaatgatagatgaatagataaatgatggatagacacataatagatggatagatagaaagatagataaatgatagatgggtatttagatggatagatag----atagataaataatagatggacagataactgacagttgggcagatagataaatgatcgatggatagataaaagatagataaatgaataatagatagatcaataaatagtaaatga
i gorGor5.CYUI01015925v1       C 0 C 0
s otoGar3.GL873584             336691 240 +  11138919 -------gata----gacagatagatagatgttggatag--agacagatgataaatatagagatagatagatggatggatacatagatattgggtagaga-------------------------tgatagatagatagata----------------------gatagatagac-------agacagatagattggaa---agatgaatg---------------gatggatggatgaatgaatagacaaatgttggatag---------------------agatagatgAGAGATCAATCTATTgat---tgatcgatagataaataattggtagatga--------tagatga
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651  14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e cerAty1.NW_012001098v1       308987 541 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=13478.000000
s hg38.chrX_KI270880v1_alt     264965 13 +    284869 --atagatgaatgac
s panTro5.chrX                 450209 13 + 155549662 --atagatgaatgat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177577 13 -    177848 --atagatgaatgat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342436 13 +    417917 --atagatgaatgat
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       309528 13 -   1025902 --atagatgatagac
i cerAty1.NW_012001098v1       I 541 C 0
s otoGar3.GL873584             336931 15 +  11138919 atacagataaatgat
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       286020 13223 -    350446 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=11215.000000
s hg38.chrX_KI270880v1_alt     264978 7 +    284869 agatggg
s panTro5.chrX                 450222 7 + 155549662 agatggg
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177590 7 -    177848 agatggg
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342449 7 +    417917 agatggg
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       309541 7 -   1025902 agataga
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       299243 7 -    350446 agatgga
i manLeu1.NW_012108508v1       I 13223 C 0
s otoGar3.GL873584             336946 7 +  11138919 agataga
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710 0 -     38397 I
e macNem1.NW_012017243v1       439221 539 +  25972781 I

a score=4242.000000
s hg38.chrX_KI270880v1_alt     264985 2 +    284869 ta
s panTro5.chrX                 450229 2 + 155549662 ta
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177597 2 -    177848 ta
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342456 2 +    417917 ta
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439760 2 +  25972781 ta
i macNem1.NW_012017243v1       I 539 C 0
s cerAty1.NW_012001098v1       309548 2 -   1025902 ta
i cerAty1.NW_012001098v1       C 0 C 0
s manLeu1.NW_012108508v1       299250 2 -    350446 ta
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             336953 2 +  11138919 ca
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     240527 1122 -    811265 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710 0 -     38397 I

a score=191463.000000
s hg38.chrX_KI270880v1_alt     264987 85 +    284869 gatagatggatagataaat-gatggata---gatagatagataata----gatgacagatagGTGAGAGAGAAATGGGTGACGGAAGGGAGAG
s panTro5.chrX                 450231 85 + 155549662 gatagatggatagataaat-gatagatg---gatagatagataata----gatgacagatagGTGAGAGAGAAATGGGTGACGGAAGGGAGAG
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177599 85 -    177848 gatagatggatagataaat-gatagatg---gatagatagataata----gatgacagataggTGAGAGAGAAATGGGTGACGGAAGGGAGAG
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342458 85 +    417917 gatagatggatagataaat-gatagatg---gatagatagataata----gatGACTGATAGGTGAGAGAGAAATGGGTGAAGGAAGGGAGAG
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439762 86 +  25972781 gatagatagaaagatagatagatagata---gatagacagataataggtggatGAC----AGGTGAGAGAGAAATGGCTGAAGAAAGGGAGAG
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       309550 85 -   1025902 gatagatag-atgatagatagatagata---gatggatagataataggtggatGAC----AGGTGAGAGAGAAATGGCTGAAGGAAGGGAGAG
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     241649 90 -    811265 gatagatagatagatagatagatagata---gatagatagataataggtagatgacagataggtgagagagaAATGGCTGAAGGAAGGGAGAG
i chlSab2.chrUn_KE147541v1     I 1122 C 0
s manLeu1.NW_012108508v1       299252 86 -    350446 ----gatagatagatagatagatagata---gatagatagataataggtagatGACAAATAGGTGAGAGAGAAATGGCTGAAGGAAGGGAGGG
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             336955 86 +  11138919 gat-gatggat-gatagat-gatggatactggattgatggataatt---agatgagata-aagagagagagaaatagacagaAGAAGGGAGAG
i otoGar3.GL873584             C 0 I 112
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=169557.000000
s hg38.chrX_KI270880v1_alt     265072 58 +    284869 AAAGAAGGAGAGAGATTTGGGGTCATTAAATAGCAGAGGAAAAGCATGTACACAAAAC-
s panTro5.chrX                 450316 58 + 155549662 AAAGAAGGAGAGAGATTTGGGGTCATTAAATAGCAGAGGAAAAGCATGTACACAAAAC-
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177684 58 -    177848 AAAGAAGGAGAGAGATTTGGGGTCATTAAATAGCAGAGGAAAAGCATGTACACAAAAC-
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342543 58 +    417917 AAAGAAGGAGAGAGATTTGGGGTCATTAAATAGCAGAGGAAAAGCATGTACACAAAAC-
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439848 58 +  25972781 AAAGAAGGAGAGAGATTTGGGGTCATTAGATAGCAGAGGAAAAGCATGTACACAAAAC-
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       309635 58 -   1025902 AAAGAAGGAGAGCGATTTGGGGTTGTTAGATAGCAGAGGAAAAGCATGTACACAAAAC-
i cerAty1.NW_012001098v1       C 0 I 55
s chlSab2.chrUn_KE147541v1     241739 58 -    811265 AAAGAAGGAGAGAGATTTGGGGTCGTTAGATAGCAAAGGAAAAGCATGTACACAAAAC-
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       299338 58 -    350446 AAAGAAGGAGAGAGATTTGGGGTCGTTAGATAGCAGGGGAAAAGCATGTACACAAAAC-
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             337153 59 +  11138919 GAGGAAGAAGAAAGATTTTGGTTCATTAAACAGCAGAGGAGAAACGTGTACAAAAAAAA
i otoGar3.GL873584             I 112 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=31885.000000
s hg38.chrX_KI270880v1_alt     265130 33 +    284869 TTTTGCAGCATGTGCAATGGAatatatatatat
s panTro5.chrX                 450374 33 + 155549662 TTTTGCAGCATGTGCAACGGAatatatatatat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177742 33 -    177848 TTTTGCAGCATGTGCAACGGAatatatatatat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342601 33 +    417917 CTTTGCAACATGTGCAATGGAatatatatatat
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439906 22 +  25972781 CTTTGCACCATCTGTAGTGGAA-----------
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     241797 30 -    811265 CTT---ATCATCTGTAAAGGAATATCTATATAT
i chlSab2.chrUn_KE147541v1     C 0 I 13
s manLeu1.NW_012108508v1       299396 24 -    350446 CTTTGCACCATCTGTAGTGGAATA---------
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             337212 26 +  11138919 TTTTGTAGCATCTTTAATGGGAAAAA-------
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=10698.000000
s hg38.chrX_KI270880v1_alt     265163 16 +    284869 gtttatatatatatat
s panTro5.chrX                 450407 16 + 155549662 gtttgtatatatatat
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177775 16 -    177848 gtttgtatatatatat
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s gorGor5.CYUI01015925v1       342634 16 +    417917 atttatatatatatat
i gorGor5.CYUI01015925v1       C 0 I 171
s otoGar3.GL873584             337238 14 +  11138919 --ATATATATGCATAT
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       299420  0 -    350446 C
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     241827 13 -    811265 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       439928  0 +  25972781 C

a score=600.000000
s hg38.chrX_KI270880v1_alt     265179 1 +    284869 g
s panTro5.chrX                 450423 1 + 155549662 g
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177791 1 -    177848 g
i panPan2.chrUn_NW_014024190v1 C 0 C 0
s otoGar3.GL873584             337252 1 +  11138919 g
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e manLeu1.NW_012108508v1       299420 0 -    350446 C
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     241827 13 -    811265 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710 0 -     38397 I
e macNem1.NW_012017243v1       439928 0 +  25972781 C
e gorGor5.CYUI01015925v1       342650 171 +    417917 I

a score=16481.000000
s hg38.chrX_KI270880v1_alt     265180 16 +    284869 tttatatatatatata
s panTro5.chrX                 450424 16 + 155549662 tttatatatatatata
i panTro5.chrX                 C 0 C 0
s panPan2.chrUn_NW_014024190v1 177792 16 -    177848 tttatatatatatata
i panPan2.chrUn_NW_014024190v1 C 0 N 0
s gorGor5.CYUI01015925v1       342821 16 +    417917 tttatatatatatata
i gorGor5.CYUI01015925v1       I 171 C 0
s macNem1.NW_012017243v1       439928 14 +  25972781 --TATCTATATATATA
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       299420 12 -    350446 ----TCTATATATATA
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337253  0 +  11138919 C
e chlSab2.chrUn_KE147541v1     241827 13 -    811265 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=6102.000000
s hg38.chrX_KI270880v1_alt     265196 14 +    284869 AATACACACACACa
s panTro5.chrX                 450440 14 + 155549662 cacacacacacaca
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       342837 14 +    417917 AATACACACagaga
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439942 14 +  25972781 AATACACagagaga
i macNem1.NW_012017243v1       C 0 C 0
s manLeu1.NW_012108508v1       299432 14 -    350446 AACACACagagaga
i manLeu1.NW_012108508v1       C 0 I 2
s otoGar3.GL873584             337253  1 +  11138919 -------------a
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e chlSab2.chrUn_KE147541v1     241827 13 -    811265 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=2511.000000
s hg38.chrX_KI270880v1_alt     265210 3 +    284869 gag
s panTro5.chrX                 450454 3 + 155549662 cac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       342851 3 +    417917 cag
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439956 3 +  25972781 gag
i macNem1.NW_012017243v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     241840 3 -    811265 gag
i chlSab2.chrUn_KE147541v1     I 13 I 2
s manLeu1.NW_012108508v1       299448 3 -    350446 gag
i manLeu1.NW_012108508v1       I 2 I 2
s otoGar3.GL873584             337254 3 +  11138919 gag
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e cerAty1.NW_012001098v1       309693 55 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710 0 -     38397 I

a score=149428.000000
s hg38.chrX_KI270880v1_alt     265213 91 +    284869 agagacagagagagagacagagtcatcagagagtcatcagacagcagaga---gGAAACCCACCCAG-CACTGAGGTCATACAGCAAGCTGGAAA
s panTro5.chrX                 450457 87 + 155549662 acacacacaGAGA----CAGAGTCATCAGAGAGTCATCAGACAGCAGAGA---GGAAACCCACCCAG-CACTGAGGTCATACAGCAAGCTGGAAA
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       342854 91 +    417917 agagacagagagagagacagagtcatcagagagtcatcagacagcagaga---gGAAACCCACCCAG-CACTGAGGTCATACAGCAAGCTGGAAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       439959 86 +  25972781 agagagacagagagagagaga-----cagagagTCATCCGGCAGCAGAGA---GAAAACCCACCCAG-GGCCGAGGTCATGCTGCAGGCTGGAAA
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       309748 91 -   1025902 agagagagagagagagacagagTCATCAGACAGTCATCCGGCAGCAGAGA---GGAAAGCCACCGAG-GGCTGAGGTCATGCTGCAGGCTGGAAG
i cerAty1.NW_012001098v1       I 55 C 0
s chlSab2.chrUn_KE147541v1     241845 91 -    811265 aggcagagagagagagtcagagTCATCAGAGAGTCACCCGACAGCAGAGA---GGAAACCCGCCCAG-GGCTGAGGTCATGCTGCAGGCTGGAAA
i chlSab2.chrUn_KE147541v1     I 2 C 0
s manLeu1.NW_012108508v1       299453 91 -    350446 agacagagagagagacacagagTCATCAGAGAGTCATCCGGCAGCAGAGA---GGAAACCCACCCAG-GGCTGAGGTCATGCTGCAGGCTGGAAA
i manLeu1.NW_012108508v1       I 2 C 0
s otoGar3.GL873584             337257 83 +  11138919 agaaagagagagacaggaagagt-----gaga-------gaaagCACAGAGCGGGAAACACACCCAGAGAAGGAGGTCATAGCCCAAGCTTGAGA
i otoGar3.GL873584             C 0 C 0
e canFam3.chrX                 381651 14 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I

a score=336004.000000
s hg38.chrX_KI270880v1_alt     265304 177 +    284869 GAGACAATGAGT-------AATGTTTGACATGAGAGGTCATTTTCTGCACGTCTGGAATCGAGGCATTGATTTTTCATACACATTATGGCTATTGGCTAGAGA---TGATCAT----------TGAACCTG----------TCTGAAGACAGATCTCTGGGTGGAGCAGACCAAGGCTGTTTGGTGACTTGCGTTATTTGAAGA-TTT
s panTro5.chrX                 450544 177 + 155549662 GAGACAATGAGT-------AATGTTTGACGTGAGAGGTCATTTTCTGCACGTCCGGAATCGAGGCATTGATTTTTCATACACATTATGGCTGTTGGCTAGAGA---TGATCAT----------TGAACCTC----------TCTGGAGACAGATCTCTGGGTGGAGCACACCAAGGCTGTTTGGTGACTTGCGTTATTTGAAGA-TTT
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       342945 177 +    417917 GAGACAATGAGT-------AATGTTTGACGTGAGAGGTCATTTTCTGCACGTCCGGAATCGAGGCATTGATTTTTCATACACATTATGGCTGTTGGCTAGAGA---TGACCAT----------TGAACCTG----------TCTGGAGACAGATCTCTGGGTGGAGCAGACCAAGGCTGTTTGGTGACTTGCGTTATTTGAAGA-TTT
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       440045 180 +  25972781 GAGACGATGAGTA-----AAATGTCTGATGTGACAGGTCATTTTCTGCACGTCTGGAATCCAGGCCTTGTTTTTTCATCCACAGTGTGGCCGTTGGCTACAAGC--TGACCAT----------TGACCGTC----------TCTGGAGAGAGATCCCTGGATAGAGCAGACCGAGGCTGTTGGGTGACTTGTGTTATTTGGAGA-TTT
i macNem1.NW_012017243v1       C 0 C 0
s cerAty1.NW_012001098v1       309839 178 -   1025902 GAGACGATGAGT-------AATGTCTGACGTGACAGGTCATTTTCTGCACGTCTGGAATCCAGGCCTTGTTTTTTCATCCACATTGTGGCCGTTGGCTACAAGC--TGACCAT----------TGACCGTC----------TCTGGAGAGAGATCCCTGGATGGGGCAGACCGAGGCCGTTGGGTGACTTGCGTTATCTGGAGA-TTT
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     241936 179 -    811265 GAGACGATGAGT-------AATGTCTGACGTGACAGGTCATTTTCTGCACGTCTGGAATCCAGGCACTGTTTTTTCATCCACATGACGGCCGTTGGCTAGAAGC--TGACCAT----------TGACCGTC----------TCTGGAGACAGATCCCTGGATGGAGCAGACCGAGGCTGTTGGGTGACTTGAGTTATTTGGAGATTTT
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       299544 180 -    350446 GAGACGATGAGT-------GACATCTGACGTGACAGGTCATTTTCTGCACGTCTGGAATCCAGGCCTTGTTTTTTCATCCACATTACGGCCGTTGGCTACAAGCTGTGACCAT----------TGACCGTC----------TCTGGAGACAGATCCCTGGATGGAGCAGACCGAGGCTGTTGGGTGACTTGCATTATTTGGAGA-TTT
i manLeu1.NW_012108508v1       C 0 C 0
s otoGar3.GL873584             337340 193 +  11138919 GAGACAATGACGGCTGATGAATGTTGGACACAAGAGGTCACCTTCCGCATGCCTGGAATTCAGAGATCGA-TTTTCATACACA-GATGGCCACTGGTTTGGACA--GGACCAC----------TTAAAGTCGGTTCATCTTTCTGGAGACACATTTTTATATGGAGCAGACAGAGGCTGTTTGGCAAACTGCGTTATCAGGTGA-TTT
i otoGar3.GL873584             C 0 I 3144
s canFam3.chrX                 381665 182 + 123869142 GAGAGAGTGACT-------GGCCCTTAACTCGGGAGGCCCTTCTCCGCACGCCTGGAATTCAGGCATCAA-TTCTCATACACG---TGACATTTAAATATGATT--AATTCATTTTAAGTCCGTGACATTG----------TCCTGGGGCAG-TTTCTGCGTCCAGCTGA-GGGTGCCGGTGGATGAGTTGCCTCATGGGGAGG-TTT
i canFam3.chrX                 I 14 I 1567
e saiBol1.JH378345             269125 743 +    465904 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I

a score=148603.000000
s hg38.chrX_KI270880v1_alt     265481 110 +    284869 CCCTGCATGCTA-CTGAAACCAGA-tgtagtgagcta-tgatcatcccac-tgcactccaccctgagcgaca--gagcgagaccctgactcttat--aaaaataaaaataaaaaaTAA
s panTro5.chrX                 450721 110 + 155549662 CCCTGCATGCCA-CTGAAACCAGA-Cgtagtgagcta-tgatcatcccac-tgcactccaccctgagcgaca--gagcgagaccctgactcttat--aaaaataaaaataaaaaataa
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343122 111 +    417917 CCCTGCATGCTA-CTGAAACCAGA-tgtagtgagcta-tgatcatcccac-tgctctccaccctgagcgaca--gagcgagaccctgactcttat-aaaaaacaaaaataaaaaaTAA
i gorGor5.CYUI01015925v1       C 0 C 0
s macNem1.NW_012017243v1       440225 115 +  25972781 CTGT-GATGCTACCTGAAACCAGAGtgtagtgaggtatttgtcgtctcacttgcactccagcctgaagcgtacagagcaagaccctgactcttat--aaaaataaaaataaaaaaTAA
i macNem1.NW_012017243v1       C 0 I 852
s cerAty1.NW_012001098v1       310017 102 -   1025902 CTGTGGATGCTA-CTGAAAGCAGA-tgtagtgaggta-ttgtcgtctcac-tgcactccagcct----------aagcgaga-cctgactcttat-aaaaaataaaaataaaaaATAA
i cerAty1.NW_012001098v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     242115 112 -    811265 CTGTGGATGCTA-CTGAGACCAGA-tggagtgagcta-ttatcgtctcac-cgcactccagcctgagcgaca--gagcgagactctgactcttataaaaaaataaaaataaaaaacaa
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       299724 111 -    350446 CTGTGGATGCCA-CTGAAAGCAGA-tgtagtgagcta-ttgtcgtctcac-cgcactccagcctgagcgaca--gagcaagaccctgactcttat-agaaaataaaaataaaaaataa
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 381847 1567 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I

a score=146151.000000
s hg38.chrX_KI270880v1_alt     265591 133 +    284869 ggcc-agtgcagtggctcaaggctgtcatcccagcactttgggaggccgaggcgggtggatcat-gaggtcaggagttcgagaccagcctggccaacagggtgaaacccc-gtctctactaaaagtacaaaaatta
s panTro5.chrX                 450831 134 + 155549662 GGCC-Agtgcagtggctcatgcctgtcatcccagcactttgggaagctgaggagggtggatcctcgaggtcaggagttcgagaccagcctgaccaacatggagaaaccct-gtctctactaaaaatacaaaaatta
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343233 133 +    417917 GGTC-Agtgcagtggctcatgcctgtaatcccagcactttgggaagctgaggcaggtggatcctcgaggtcaggacttcgagaccagcctgaccaacatggagaaacccc-gtctctactaaaaatac-aaaatta
i gorGor5.CYUI01015925v1       C 0 C 0
s cerAty1.NW_012001098v1       310119 133 -   1025902 ggcc-ggcgcggtggctcacgcctgtcaccgcagcactgtgggaggccgaggcgggcggatcac-aaggtcaggagttcgagaccagcctggccaacatggtgaaacccc-gtctctactaaaaatacaaaaatta
i cerAty1.NW_012001098v1       C 0 I 749
s chlSab2.chrUn_KE147541v1     242227 134 -    811265 ggccgggcgcggtggctcacgcctgtcatcccagcattgtgggaggccgaggcggacggatcac-gaggtcaggagatcgagaccagcctggccaacatggtgaaacccc-gtctctattagaaatacaaaaatta
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       299835 135 -    350446 ggccgggcgcggtggctcacacctgtcaccccagcactgtgggaggccgaggcgggcggatcac-aaggtcaggagttcgagaccagcctggccaaagtcgtgaaaccccggtctctactaaaaatacaaaaatta
i manLeu1.NW_012108508v1       C 0 C 0
e canFam3.chrX                 381847 1567 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       440340 852 +  25972781 I

a score=43232.000000
s hg38.chrX_KI270880v1_alt     265724 54 +    284869 tctgggagtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcag
s panTro5.chrX                 450965 54 + 155549662 tctgggcgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343366 54 +    417917 tctgtgcatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcag
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     242361 53 -    811265 gccgggtgt-gtggcaggtgcctgtaatcccagctactcgggaggctgagtcag
i chlSab2.chrUn_KE147541v1     C 0 C 0
s manLeu1.NW_012108508v1       299970 54 -    350446 gccaggcatggtggcaggtgcctgtaatcccagctactcgggaggctgaggcag
i manLeu1.NW_012108508v1       C 0 T 8279
e canFam3.chrX                 381847 1567 + 123869142 I
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e cerAty1.NW_012001098v1       310252 749 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       440340 852 +  25972781 I

a score=23653.000000
s hg38.chrX_KI270880v1_alt     265778 51 +    284869 gagaatggcgtgaacct-ggaggcagaggttgcagtgagccgagatgttgcc
s panTro5.chrX                 451019 52 + 155549662 gagaatggcgtgaacccaggaggcagaggttgcagtgagccgagatgttgcc
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343420 51 +    417917 gagaatggcgtgaacct-ggaggcagaggttgcagtgagccgacatgttgcc
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     242414 52 -    811265 gaggatcgcttgaacccaggaggcggaggctgcagtgagccgagatggtgcc
i chlSab2.chrUn_KE147541v1     C 0 I 572
e canFam3.chrX                 381847 1567 + 123869142 I
e manLeu1.NW_012108508v1       300024 8279 -    350446 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e cerAty1.NW_012001098v1       310252 749 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710  0 -     38397 I
e macNem1.NW_012017243v1       440340 852 +  25972781 I

a score=129197.000000
s hg38.chrX_KI270880v1_alt     265829 510 +    284869 caggctgggtgacagagcaagactccatttcaaaaaataaataaaTTaattaaataaaaataacataacataaaataaaatGGGAACGTCTCCACTCCTCAGAGTGACTCATCCCACCGATCCCACACTGAAATTTAGTTTTTGACACACTGCAGAATGCAAGTAATAATTGCTCAAAATTTGACTGAAGGCGCAGCCCAGAAAGTGAGCTCAAGAAGGTAGGGATGTGGGTG-TTTTTGTTCAGAAGTAtctctctctctctctctctttttttttttttttttttttttgagatggagtctcgctctgtcacccaggctggaatgcagtggtgcgatctcggctcactgcaagatccgcctcctgggttcacaccattctcctgcctcag-cctcccaagtagctgggactacaggtgcccgccaccacgcccggctaattttttgtatttttagtagagttggggtttcaccatgttggccaggctggtcttgaactcctgacctcaag
s panTro5.chrX                 451071 504 + 155549662 caggctgggtgacagagcaagactccatttcaaaaaataaaTTaattaattaaataaaaataacataacgtaaaataaaatGGGAACGTCTCCACTCCTCAGAGTGACTCATCCCACTGATCCCACACTGAAATTTAGTTTTTGACACACTGCAGAATGCAAGTAATAATTGCTCAAAATTTGACCGAAGCCGCTGCCCAGAAAGTGAGCTCAAGAAGGTAGGGATGTAGGTC-TTTTTGTTCAGAAGTATCTCTCTCTCTCC------ttttttttttcttttttgttttgacatggagtctcgctctgtcacccaggctggagtgcagtggtgcgatctgggctcactgcaagatccgcctcctgggttcacaccattcccctgcctcag-cctcccaagtagctgggactacaggtgcccgccaccactccaggctaattttttgtatttttagtagagttggggtttcaccatgttggccaggctggtcttgaactcttagcctcaag
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343471 501 +    417917 caggctgggtgacagagcaagactccatttcaaaaaataaataaaTTaattaaataaaaataacataacataaaataaaatGGGAACGTCTCCACTCCTCAGAGTGACTCAT-CCACCGATCCCACACTGAAATTTAGTTTTTGACACACTGCAGAATGCAAGTAATAATTGCTCAAAATTTGACTGAAGCCGCTTCccagaaagtgagctcaagaaggtagggatgtgggtcttttttgttcagaagtatcctctttt----------tttttttttttttttttcttttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcgatctgggctcactgcaagatccgcctcctgggttcacaccattctcctgcctcagccctcccaagtagcttggactacaggtgcccgccaccactccaggctaattttttgtatttttagtagagttgggatttcaccatgttggccaggctggtcttgaactcttagcctcaag
i gorGor5.CYUI01015925v1       C 0 C 0
e canFam3.chrX                 381847 1567 + 123869142 I
e manLeu1.NW_012108508v1       300024 8279 -    350446 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1     242466 572 -    811265 I
e cerAty1.NW_012001098v1       310252 749 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       440340 852 +  25972781 I

a score=56911.000000
s hg38.chrX_KI270880v1_alt     266339 120 +    284869 aacctccacctcccaggttcaagtgagtctcctgcctcagcctcccgagtagctgggactacaggcacctgccactacacccggctaa--tttttgtatttttagtagagacggggtttcac
s panTro5.chrX                 451575 120 + 155549662 aacctccacctcccagattcaagtgagtctcctgcctcagcctcccgagtaggtgggactacaggcacctgccaccatgcctggctaa--tttttgtgtttttagtagagacggggtttcac
i panTro5.chrX                 C 0 C 0
s gorGor5.CYUI01015925v1       343972 122 +    417917 aacctccacctcccaggttcaagcgagtctcctgcctcagcctcccgagtagctaggactacaggcacctgctactgcgcccggcTAATTtttttgtatttttagtagagacggggtttcac
i gorGor5.CYUI01015925v1       C 0 C 0
s chlSab2.chrUn_KE147541v1     243038 120 -    811265 aacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccaagcctggctaa--ttttgtattttttagtagagatggggtttcac
i chlSab2.chrUn_KE147541v1     I 572 C 0
e canFam3.chrX                 381847 1567 + 123869142 I
e manLeu1.NW_012108508v1       300024 8279 -    350446 T
e saiBol1.JH378345             269125 743 +    465904 I
e otoGar3.GL873584             337533 3144 +  11138919 I
e cerAty1.NW_012001098v1       310252 749 -   1025902 I
e colAng1.NW_012115411v1       426512 7495 +   1230721 I
e rheMac8.chrUn_NW_014831239v1  36710   0 -     38397 I
e macNem1.NW_012017243v1       440340 852 +  25972781 I

a score=52887.000000
s hg38.chrX_KI270880v1_alt 266459 64 +    284869 cacattggccaggctggtcttgaactcctgacctcgtgatccgcccacctcggcctcccaaagt
s panTro5.chrX             451695 64 + 155549662 catgttggccaggctggtctcgaactcctgaccttgtgatccacccgcctcggcctcccaaagt
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344094 64 +    417917 catgttggccaggctggtctcgaactcctgacctcgtgatccgcccgcctcggcctcccaaagt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             155035 64 + 149150640 cacgttggccaggctggtctctatctccggacctcatgatccaccggcctcggcctcccaaagt
i rheMac8.chrX             I 2843 C 0
s chlSab2.chrUn_KE147541v1 243158 64 -    811265 catattggccaggctggtctcgaactcctgacctcgtgatccgcctgcctcggccgcccaaagt
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   440340 852 +  25972781 I

a score=411620.000000
s hg38.chrX_KI270880v1_alt 266523 386 +    284869 gctggga-ttacaggcatgaggccaccgcgcccggccAAAAATGGATTTTAATTGCCTAAATTTCCTGCCTCTAGGAGA-AAGTACCTTCT-TGATCCTTCAGGAGCTAATTTCCACCCAAATCCTCGATGGCTTCAGGGCTCTGGC---TGGCAGATGATGTTACAG-TGAGGAAGCCGTCATCCTGTGTGGAGTATGGTTCACACTAGCATGCTGTGTCCTGGCCATCAAAGAGATACATGTGCCAGATAAAATATGTGTGTATAGATCACGCATAAACTTGCATTCTGGGTCTTCATAAAGAAGTTTAAAGAAggccgggagtggtgg---ctcacgcctgtaatc-ccagcactttggggggc-cgaggtgggtgg-atcacctgaggtcaggag
s panTro5.chrX             451759 383 + 155549662 gctggga-ttacaggcatgaggccaccgtgcccggccAAAAATGGATTTTAATTTCCTAAATTTCCTGGCTCTAGGAGA-AAGTACCTTCT-TGATCCTTCAGGAGCTAATTTCCACCCAAATCCTCGATGGCTTCAGGGCTCTGGC---TGGCAGATGATGTTACAG-TGAGGAAGCCATCGTCCTGTGTGGAGTATGGTTCACACCAGTATGCTGTGTCCTGGCCATCAAAGAGATACATGTGCCAGAAAAAAT--GTGTGTATAGATCATGCATAGACTTGCATTCTGGGTCTTCATAAA-AAGTTTAAATAAggccgggagtggtgg---ctcacacctgtaatc-ccagcactttggggggc-cgaggtgggtgg-atcatctgaggtcaggag
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344158 387 +    417917 gctgggatttacaggcctgaggccaccgtgcccagccAAAAATGGATTTTAATTTTCTAAATTTCCTGCCTCTAGGAGA-AAGTACCTTCT-TGATCCTTCAGGAGTTAATTTCCACCCAAATCCTCGATGGCTTCAGGGCTCTGGC---TGGCAGATGATGTTACAG-TGAGGAAGCCGTCGTCCTGTGTGGAGTATGGTTCACACCAGCATGCTGCGTCCTGGCCATCAAAGAGATACATGTGCCAGATAAAATATGTGGGTATAGATCACGCATAGACTTGCATTCTGGGTCTTCATAAAAAAGTTTAAAGAAggccgggagtggtgg---ctcacgcctgtaatc-ccagcactttgggaagc-cgaggtgggtgg-atcacctgaggtcaggag
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             155099 386 + 149150640 gctgggg-tgacaggcatga-gccaccgcgctcggccAAAAATGGATTTTAATTTCCTAAATATCCTGCCTGTGGGAGACCAGTACCTTCGTTGATCCTGCAGGAGCTAATTT-CACCCAAATCCTC-ACGGCTTTTGGGCTCTGGCTA-TAGCAGGTGATGTCACAGTTGACGCAGCCGTCGTCCTGTGT-GAGGATGGTTCCCGTCCGTGTGCTGTGTCCTGGCCAGCAAAGGAGTACAGGTACCAGGTAAAATGTGTGTGTGTAGATCACGCATAGACTTGGATTCT-GGTCTTCATAAA-AAGTTTAAAGAAGTccggatggggtgg---ctcacacctgtcatccccagcactttgggaggcgcgaggcgggtg--atcacctgaggtcagaga
i rheMac8.chrX             C 0 C 0
s macNem1.NW_012017243v1   441192 392 +  25972781 gctgggg-tgacaggcatga-gccaccgcgctcggccAAAAATGGATTTTAATTTCCTAAATATCCTGCCTGTGGGAGA-AAGTACCTTCG-TGATCCTGCAGGAGCTAATTTCCACCGAAATCCTCAACGGCTTTGGGACTCTGGCTA-TAGCAGGTGATGTCACAG-TGACGCAGCCGTCGTCCTGTGTGGAGGACGGTTCCCGTCCGTGTGCTGTGTCCTGGCCAGCAAAGAGGTACAGGTACCAGGTAAAATGTGTGTGTGTAGATCACGCATAGACTTGGATTCTGGGTCTTCATAAA-AAGTTTAAAGAAggcccggagtggtggctcctcacacctgtcatcgcagcaactctggagggccgagggcgggtggcatcacctgaggtcaggag
i macNem1.NW_012017243v1   I 852 I 4079
s chlSab2.chrUn_KE147541v1 243222 387 -    811265 gctggga-tgacaggcatga-gccaccgcgctcggccAAAAATGGATTTTAATTTCCTACATATCCTGCCTCTGGGAGA-AAGTACCTTCC-TGATCCTTCGGGAGCTAATTTCCAGCCAAATCCTCAACGGCTTCGGGGCTCTGGCTATTAGCAGATGATGTCACAG-TGACGCAGCCGTCGTCCTGTGTGGAGGATGGTTCCCGTCCGTGTGCTGTGTCCTGGCCAGCAAAGAGGTACGGGTACCAGGTAAAATGTGTGTGTGTAGCTCACACATAGACTTGGATTCTGGGTCTTCATAAA-AAGTTTAAAGAAggcccggagcggtgg---ctcacacctgtcatc-ccagcactttgggaggc-cgaggcaggtgg-atcacctgaggtcaggag
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I

a score=53348.000000
s hg38.chrX_KI270880v1_alt 266909 67 +    284869 ttcgagaccagcctgaccaacacggtgaaaccccatctctactaaaaatacaaaaattagccaggcg
s panTro5.chrX             452142 67 + 155549662 ttcgagaccagcctggccaacatgctgaaaccccgtctgtactaaaaatacaaaaattagccaggcg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344545 67 +    417917 ttcgagaccagcctgaccaacacggtgaaaccccgtctctactaaaaatacaaaaattagccaggcg
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             155485 67 + 149150640 tgcagagacagcctggccaacatcgtgaaaccccgtctctactaaaaatacaaaaattagccaggtg
i rheMac8.chrX             C 0 I 11
s chlSab2.chrUn_KE147541v1 243609 67 -    811265 ttcgagaccagcctggtcaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggca
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=5376.000000
s hg38.chrX_KI270880v1_alt 266976 11 +    284869 tggtggcaggt
s panTro5.chrX             452209 11 + 155549662 tggtggcaggt
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344612 11 +    417917 tggtggcagga
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 243676 11 -    811265 cggtggcaggt
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             155552 11 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=12740.000000
s hg38.chrX_KI270880v1_alt 266987 15 +    284869 gcctgtaatcccagc
s panTro5.chrX             452220 15 + 155549662 gcctgtaatcccagc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344623 15 +    417917 gcctgtaatcccagc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             155563 15 + 149150640 gcctgtaatcgcagc
i rheMac8.chrX             I 11 C 0
s chlSab2.chrUn_KE147541v1 243687 15 -    811265 gcctgtcatcccagc
i chlSab2.chrUn_KE147541v1 C 0 I 1540
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=51837.000000
s hg38.chrX_KI270880v1_alt 267002 116 +    284869 actttgggggaccgaggtgggtggatcatctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaagaaatacaaaaattagtcaggcgtggtg
s panTro5.chrX             452235 114 + 155549662 actttgggaggccgaggcgggtggatcac--gaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaagaaatacaaaaattagtcaggcgtggtg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   344638 113 +    417917 actttggggggccgaggtgggtggatcAGctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaa--aaatac-aaaaTTAgccgggcgtggtg
i gorGor5.CYUI01015925v1   C 0 I 2140
s rheMac8.chrX             155578 112 + 149150640 attttgggaggccgaggcaggtggatcac--aaggtcaggagttcgagaccagcctggccaacatgatgaaacccgtcctctactaa--agatacaaaaattagccgggcgtggtg
i rheMac8.chrX             C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=40252.000000
s hg38.chrX_KI270880v1_alt 267118 198 +    284869 acaggtgcctgtcatcccagctactcggggggctgaggcagaattg-ttgaacctggga-ggcggtggtt-gtagagagccgaggtcactgcactccagcctgggcga-tagagtgaga-ctcagtgtcaaaaaaaaaaaaaaaaTTAAAGATAGAGggagaaagaggagaaacaagagga----ggaggaggctggaggaggag--------------------------------aa
s panTro5.chrX             452349 226 + 155549662 gcagatgcctgtaatcccagctactcggggggctgaggcagaattg-ttgaacctggga-ggcggtggtt-gtagagagccgaggtcactgcactccagcctgggcga-tagagtgaga-ctcagtgtcaaaaaaaaaaaa----TTAAAGATAGAGggagaaagaggagaaacaagagga----ggaggaggttggaggaggaggaggttggaggaggaggaggttggaggaggagaa
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             155690 206 + 149150640 gcaggtgcctgtagtcccagctactcgggaggctgaggcagaattgcttgaaccggggagggcagagattggcagacagccgaggtcacttcactccagcctggatgattagagtgagacctcagtgtcaaaaaaaaaaaa-aGTTTGAAGATggagggggaaagaggagaaagaagaggagggcggaggaggttggaggaggag--------------------------------aa
i rheMac8.chrX             C 0 I 33
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=4238.000000
s hg38.chrX_KI270880v1_alt 267316 44 +    284869 ggaggaggaagagaaagaggaggaggtggaggaggagggagaca
s panTro5.chrX             452575 44 + 155549662 ggaggaggaagagaaagaggaggaggtggaggaggagggagaca
i panTro5.chrX             C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             155896 33 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=17429.000000
s hg38.chrX_KI270880v1_alt 267360  94 +    284869 gaggaggaggaggg---agtggttggaggaggag----------------aaagagaaggatgaggaagagaaaaagaaggagggggaggaggaagaagaggaggaggggaag
s panTro5.chrX             452619 108 + 155549662 gaggaggaggaggaggaagtggttggaggaggaggtggttggaggagcagaaagagaaggacgaggaagagaaaagga-----ggggaggaggaagaacaggaggaggggaag
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             155929  89 + 149150640 gaggagaaggagg----aggcgttggaggaggag----------------aaacagaaggacaaggaagagaaaaagga----ggggaggaggaaggagaggaggaggggaag
i rheMac8.chrX             I 33 I 8672
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=9829.000000
s hg38.chrX_KI270880v1_alt 267454 124 +    284869 gaggagaaagag------gaggagagggaggaagaggaggaggctggaggaggagaaaaaggagaaagagaaaaaggaggagggagaggaggaggggaaggaggagggagagaaagaggaggagagggag
s panTro5.chrX             452727 129 + 155549662 gaggagaaagagaaagaggaggagagggaggaagaggaggaggctggaggaggagaaaaaggggaaagagaaaaaggaggagggagaggaggagggcaaggaggagggagaggg-gaggaggaaagaaag
i panTro5.chrX             C 0 I 249
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=0.000000
s hg38.chrX_KI270880v1_alt 267578 264 +    284869 gaagaggaggaggctggaggaggaggaaaaggagaaagagaaaaaggaggagggagaggaggaggggaagggggagggagagaaagaggaggagagggaggaagaggaggaggctggaggaggaggaaaaggagaaagagaaaaaggaggagggagaggaggaggggaagggggagggagagaagtagaagcaggaagagtggggaaggaggaggttggagaaggtggaggaggaagaagagaaacaggaagaagaggaggaaa
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e panTro5.chrX             452856 249 + 155549662 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=260.000000
s hg38.chrX_KI270880v1_alt 267842 4 +    284869 aagg
s panTro5.chrX             453105 4 + 155549662 aggg
i panTro5.chrX             I 249 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   344751 2140 +    417917 I

a score=82551.000000
s hg38.chrX_KI270880v1_alt 267846 425 +    284869 ggaggaggagggagaggaggaaagagaggaggaggggaaggaggaggaagagaaagaggagg-agggggagaagcagggagaggaggaggaggaagagaaagaggaggaggg---agaggaggagggagaggaggaggaagagaaagaggagaagggagaggaggagggg---------gaggaggagggagaggaggaggaggaagagaaagaggagaagggagaggaggaagagcctggaggaggaggaagagaaagaagaaaaggaagaggaggggaaagaagaggctggagaagatggaggaggaagaagagaaagaggaagaggagaggggagaggatgaggggaaggaggaggaagagaaagaggaggagggagaggagg-------------------------------aagaggc---------------tggagaggag---------------aaggaggaagagaaagaggaggagggggaggaggg
s panTro5.chrX             453109 440 + 155549662 ggagggggaggg-gaggagga----ggggaggagagga-ggaggagagggggaacgagcagggaagaggagaaggagtaagaagaagaggaggaggagag-gaggaggaaagcagagaggaggagggagaggaggaggagggg---gacgagcagggagaggaggaggagtaagagaaagaggaggagggagaggaggagga---agagaaagaggaggagggagaggaggaagagcctggaggaggaggaagagaaagaagaaaaggaagaggaggggaaggaagaggctggagaagatggaggaggaagaagagaaagaggaagaggagaggggagaggaggagggagaggaggaggaagagaaagaggaggagggagaggagg-------------------------------aggaggaagagaaagaggaggagggggaggag---------------gaggaggaagagaaagaggaggagggggaggaggg
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   346891 466 +    417917 ggaggaggagggggaggagcagggagaggagaaggagggagaggaggagggaaaggaggagg----gggaggagcagggagaggaggaggaggaagagaaagaggaggaggg---agaggaggagggagaggagga----------gaggaagagaaagaggaggaggga---------gaggaggagggagaggaggaggaggaagagaaagacgaggagggagaggaggaagagcctggaggaggaggaagagaaaga--aaaaggaagaggaggggaaggaagaggctggagaagatggaggaggaagaagag--agaggaagaggagaggggagaggatgag---aagaaggaggaagagaaagaggaggagggagaggaggaagagggctggagaggagaagaaggaagagaaagaggaggagggggaggaggggaaggaagaggctggagaaggtagagaggaggaagagaaagaaaaggagggggaggagag
i gorGor5.CYUI01015925v1   I 2140 I 74
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=764.000000
s hg38.chrX_KI270880v1_alt 268271 8 +    284869 gaaggaag
s panTro5.chrX             453549 8 + 155549662 gaaggaag
i panTro5.chrX             C 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   347357 74 +    417917 I

a score=13487.000000
s hg38.chrX_KI270880v1_alt 268279 50 +    284869 aggttggagaaggtagaggaggaagaagcgaaagaaaaggagggggagga
s panTro5.chrX             453557 50 + 155549662 aggttggagaaggtagaggaggaagaagagaaagaaaaggagggggagta
i panTro5.chrX             C 0 C 0
s panPan2.chrX             488695 50 + 155392059 AGGTTGGAGAaggtagaggaggaagaagagaaagaaaaggagggggagga
i panPan2.chrX             N 0 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I
e gorGor5.CYUI01015925v1   347357 74 +    417917 I

a score=46374.000000
s hg38.chrX_KI270880v1_alt 268329  99 +    284869 gagagg-ggaggagaaagaacaggaagag------------------------gagagggagaaggaggaacaagagaagggggaagaggggaggaggaaaagatgagaggaggagaaggaagc
s panTro5.chrX             453607  99 + 155549662 gagagg-ggaggagaaagaacaggaagag------------------------gagagggagaaggaggaacaagagaagggggaggaggggaggaggaaaagatgagaggaggagaaggagga
i panTro5.chrX             C 0 C 0
s panPan2.chrX             488745  99 + 155392059 gagagg-ggaggagaaagaacaggaagag------------------------gagagggagaaggaggaacaagagaagggggaggaggggaggaggaaaagatgagaggaggagaaggagga
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   347431 123 +    417917 gagaggaggagaaggaggaacaagagaagggggaaggggaggaggaaagatgagaggaggagaaggaggaacaagagaagggggaggaggggaggagg-aaagatgagaggaggagaaggagga
i gorGor5.CYUI01015925v1   I 74 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e chlSab2.chrUn_KE147541v1 243702 1540 -    811265 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=25256.000000
s hg38.chrX_KI270880v1_alt 268428 30 +    284869 ggaagagaaagagggagaggtggagaaggg
s panTro5.chrX             453706 30 + 155549662 ggaagagaaagaggcagaggtggagaaggg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             488844 30 + 155392059 ggaagagaaagaggcagaggtggagaaggg
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   347554 29 +    417917 -gaagagaaagagggagaggtggagaaggg
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 245242 30 -    811265 ggaggaggaagaggtagaggtggaggaggg
i chlSab2.chrUn_KE147541v1 I 1540 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e manLeu1.NW_012108508v1   300024 8279 -    350446 T
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e cerAty1.NW_012001098v1   310252 749 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=45852.000000
s hg38.chrX_KI270880v1_alt 268458 35 +    284869 gg--aggaggaggggaaggaggaggaggaagaggagg
s panTro5.chrX             453736 35 + 155549662 gg--aggaggaagggaaggaggaggaggaggagaagg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             488874 34 + 155392059 gg--agggggaggggaaggaggaggaggagaaggag-
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   347583 37 +    417917 gagcagaagggaagagaggaggaggaggaagaggagg
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311001 35 -   1025902 gg--aggaacaggggaagggggccgaggaagaggagg
i cerAty1.NW_012001098v1   I 749 C 0
s chlSab2.chrUn_KE147541v1 245272 35 -    811265 gg--aggaagaggggaagggggccgaggaagaggagg
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   291745 35 -    350446 gg--aggaagagggggagggggccgaggaagaggagg
i manLeu1.NW_012108508v1   T 8279 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e saiBol1.JH378345         269125 743 +    465904 I
e otoGar3.GL873584         337533 3144 +  11138919 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=1045429.000000
s hg38.chrX_KI270880v1_alt 268493 649 +    284869 -aggagaagaaggtggaggagggagaaaagggaagaggggggcagag-----------ggtggagaggGACTCAGGAAAACAGGTCCCCCTCACCC---CCATCCCACCGTAATAAAGACATGACGCCTTTTTA-----TGCTGAGAAAACATCAAGCTGTGTTTCTCCTTCCCCAGAGACACTTCGCAGCCCCTCTTGGGATCCAG------CGCAGCGCAAGGTAAGCCAGATGCCTCT--GCTG--TTGCCCTCCCTGT-GGGCCTGCTCTCCTCACGC---CGGCCCCCACCTGGGCCACCTGTGGCACCTGCCAGGAGGCTGAGCTGC---AAACCCCAATGAGGGGCAGGTGCTCCCGGAGACCTGCTTCCCACACGCCCATCGTTCTGCCCCCGGCTTTGAGTTCTCCCAG--GCCCCT-------CTGTGCACCCCTCCCTA----------GCAGGAAC--------ATGCCGTCTGCCCCCTTGAGCTTTGCAAGGTCTCGGTGATAATAG-GAAGGTCTTTGCCTTGCAGGGAGA--ATGAGTCATCCGTGCTCCCTCCGAGGGGGATTCTGGAGTCCACAGTAATTGCAGGGCTGACACTCTGCC------CTGCACCGGGCGCCCCAGCTCCTCCCCACCTCCCTCCTCCATCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCGC-TCAGGGGCCTGTAACTGGGGAAGGTATA
s panTro5.chrX             453771 649 + 155549662 -ag------aaggtggaggagggagaaaagggaagaggggggcagag-----------ggtggagaggGACTCAGGAAAGCAGGTCCCCCTCACCC---CCATCCCACCATAATAAAGACATGACTCCTTTTTA-----TGCTGAGAAAACATCAAGCTGTGTTTCTCCTTCCCCAGAGACACTTCGCAGCCCCTCTTGGGATCCAGAGCCAGGGCAGCGCAAGGTAAGCCAGATGCCTCT--GCTG--TTGCCCTCCCTGT-GGGCCTGCTCTCCTCACGC---CGGCCCCCACCTGGGCCACCTGTGGGACCTGCCACGATGCTGAGCTGC---AAACCCTAATGAGGGGCAGGTGCTCCCGGAGACCTGCTTCCCACACGCCCATCGTTCTCTCCCCCGCTTTGAGTTCTCCCAG--GCCCCT-------CTGTGCACCCCTCCCTA----------GCAGGAAC--------ATGCCGTCTGCCCCCTTGAGCTTTGCAAGGTCTCGGTGATAATAG-GAAGGTCTTTGCCTTGCAGGGAGA--ATGAGTCATCCGTGCTCGCTCCGAGGGGGATTCTGGAGTCCACAGTAATTGCAGGGCTGACACTCTGCC------CTGCACCGGGCGCCCCAGCTCCTCCCCACCTCCCTCCTCCATCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCGC-TCAGGGGCCTGTAACTGGGGAAGGTATA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             488908 641 + 155392059 ---------aaggtggaggagggagaaaagggaagaggGGGGCAGAG-----------GGTGGAGAGGGACTCAGGAAAGCAGGTCCCCCTCACCC---CCATCCCACCGTAATAAAGACATGACGCCTTTTTA-----TGCTGAGAAAACATCAAGCTGTGTTTCTCCTTCCCCAGAGACACTTCGCAGCCCCTCTTGGGATCCAG------TGCAGCGCAAGGTAAGCCAGATGCCTCT--GCTG--TTGCCCTCCCTGT-GGGCCTGCTCTCCTCACGC---CGGCCCCCACCTGGGCCACCTGTGGGACCTGCCACGATGCTGAGCTGC---AAACCCTAATGAGGAGCAGGTGCTCCCGGAGACCTGCTTCCCACACGCCCATCGTTCTCTCCCCCGCTTTGAGTTCTCCCAG--GCCCCT-------CTGTGCACCCCTCCCTA----------GCAGGAAC--------ATGCCGTCTGCCCCCTTGAGCTTTGCAAGGTCTCGGTGATAATAG-GAAGGTCTTTGCCTTGCAGGGAGA--ATGAGTCATCCGTGCTCGCTCCGAGGGGGATTCTGGAGTCCACAGTAATTGCAGGGCTGACACTCTGCC------CTGCACCGGGCGCCCCAGCTCCTCCCCACCTCCCTCCTCCATCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCGC-TCAGGGGCCTGTAACTGGGGAAGGTATA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   347620 647 +    417917 -aggggaaggaggtggaggagggagaaaagggaaga-ggGGGCAGAG-----------GGTGGAGAGGGACTCAGGAAAGCAGGT-CCCCTCA-CC---CCATCCCGCCGTAATAAAGACACGACGCCTTTTTATTTTTTGCTGAGAAAACATCAAGCTGTGTTTCTCCTTCCCCAGAGACACTTCGCAGCCCTTCTTGGCATCCAG------TGCAGCGCAAGGTAAGCCAGATGCCTCT--GCCG--TTGCCCTCCCTGT-GGCCCTGCTCTCCTCACGC---CGGCCCCCACCTGGGCCACCTGTGG-ACCTGCCAGGATGCTGAGCTGC---AAACCCTAATGAGG-GCAGGTGCT-CCAGAGACCTGCTTCCCACACGCCCATCGTTCTCTCCCC-GCTTTGAGTTCTCCCGG--GCCCCT-------CTGTGCACCCCTCCCTA----------GCAGGAAC--------ATGCCGTCTGCCCCCTTGAGCTTTGCAAGGTCTCGGTGATAATAG-GAAGGTCTTTGCCTTGCAGGGAGA--ATGAGTCATCCGTGCTCCCTCCGA-GGGGATACTGGAGTCCACAGTAATTGCA-GGCTGACACTCTGCC------CTGCACCGGGCG-CCCAGCTcctcccaccctccctcctccatccctgtctcccGGCTA----TTAATGCGGGGGCGCTTCAGGGGCCTGTAACTGGGGAAGGTATA
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311036 642 -   1025902 -aggaa---aaggtggaggaggCCGAAAAGGGAA-AGCGGGGCAGAG-----------GGGGCAGAGGGACTCCGGAAAGCGGGGCCCCCTCACCC---CGGTCCCGCCATAATAAAGACACGACGCTTTTTCT-----TGCTGAGAAAACACGAAGCTGTGTTTCTCCCTCCCCAGAGACCCTCCGCAGCCCC-CCCGGGAGCCGC------TGCAGCCCGACCTAAGCCAGATGCCTGC--GCTG--TTCCCCTCCCTGTGGGACCTGCTCTCCCCACGCCG-CGGCCCCCACCCGGGCCCCGTCGGAGCGCTGCCAGGAGGCTGAGCGGC---AAACCCTAATGAGGGGCAGGTGCACCCGGAGACCGGCTTCCCACAGGCCCGTCGCTCCCTCCCGCGCTGGGAGTTCTCTCGG--GCCCCG--------TTTCCCCCCCTCCCTG----------GCAGGAAC--------ATGCCGCCTGCGCCCCGGAGCTTTGCGAGGTCTCGGTGATAATAGCAAAGGTCTTTGCCCCGCGGGGAGA--ATGACTCATCCGCGCTGCATCCCAGGCGGATTCCGGAGTCCGCAGTAATTGCAGGGCGGACACTCTGCC------CCGCACAGGGCGCCCCAGCTCCTCCC-----CCGTCCTCCGTCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCTC-TCAGGGGCCTCTAACCGGGGCAGGTATA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 245307 625 -    811265 -aggag---aaggtggaggaggCCGAAAAGGGAA-AGGGGGGCAGAG-----------GGTGCAGAGGGACGCAGGAAAGCGGGGCCCCCTCACCC---CCGTCCCGCCATAATAAAGACACGACCCCTGTTCT-----TGCTGAGAAAACACGAAGCTGTGTTGCTCCTTCCCCAGAGACCCTCCGCAGCCCC-CCCGGGAGCCGC------TGCAGCCCGACCCCAGCCAGATGCCTGC--GCTG--TTCCCCTCCCTGT-GGACCTGCTCTCCCCACGC---CGGCCCCCGCCCCGGCCACCTCTGAGCGCTGCCAGGAGGCTGAGCGGC---AAACCCTAATGAGGGGCAGGTGCACCCGGAGACCGGCTTCCCACAGGCCCGTGGCTCGCTCCCGCGCTGGGAGTTCTCTCGG--GCCCCG--------GGTCCCCCCCTCCCTG----------GCAGGAAC--------CTGCCGCCTGCGCTCTGGAGCTTTGCGAGGTCTCGGTGATAATAGCAAAGGTCTTTGCCCTGCGGGGAGAATATGACTCATCCGCGCTGCATCCCAG----------------GCAGTAATTGTAGGGCGGACACTCGGCC------CCGCGCAGGGCGCCCCAGCTCCTCCC-----CCCTCCTCCATCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCTC-TCAGGGGCCTCTAACTGGGGCAGGTATA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   291780 641 -    350446 -aggag---aaggtggaggaggCCGAAAAGGGAA-AGGGGGGCAGAG-----------GGTGCAGAGGGACTCCGGAAAGCGGGGCCCCGTCACCC---CCGTCCCGCCATAATAAAGACGCGACGCTTTTTGT-----TGCTGAGAAAACACGAAGCTGTGTTTGTCCTTCCCCAGAGACCCTCCGCAGCCCC-CCCGGGAGCCGC------TGCAGCCCGACCTAAGCCAGATGCCTGC--GCTG--TTCCCCTCCCTGTGGGACCTGCTCTCCCCACGCCG-CGGCCCCCGCCCGGGCCCCGTCTGAGCGCTGCCAGGAGGCTGAGCGGC---AAACCCTAATGAGGGGCAGGTGCACCCGGAGACCGGCTTCCCACAGGCCCGTCGCTCCCTCCCGCGCTGAGCGTTCTCTCGG--GCCCC---------GTTTCCCCCCTCCCCG----------GCAGGAAC--------ATGCCGCCTGCGCCCCGGAGCTTTGCGAGGTCTCGGTGATAATAGCAAAGGTCTTTGCCCTGCAGGGAGA--ATGACTCATCCGCGCTGCATCCCAGGCGGATTCCGGAGTCCGCAGTAATTGCAGGGCGGACACTCTGCC------CCGCACAGGGCGCCCCAGCTCCTCCC-----CCGTCCTCCGTCCCTGTCT-CCGGCTA----TTAAGAC-GGGGCTC-TCAGCGGCCTCTAACTGGGGCAGGTATA
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         340677 665 +  11138919 AAGGAGAG-GAGGAGGAGGAGGGAAGAGAGAGAG-TGGGAAGCCTGGCCCTCTCACCCGGAAGAGAGAGAGT--GGGAAGCCTGGCCCTCTCACCCGTACCACCACAAGATAATTAAGACATTATGTCTTTTTG-----TGCAGAGAAACCATCAACCTAGGTTTCTTTTTCCACAAAGATACTCTGCAGTCCTGTTTGTGAGCAAC------TGCAGCCCAACCTAGGCCAGATGTCTCCCACCTGCACGGCCCTCCCTGC----CTTGCCCTCTCTGCCCCACTGACCCCCACTTGGGCCACCTCCATGCCCCGCCGGGAAGCCGATCGTCCCACAGCCCTAATGAGCACCAGGCCCAGCCGAGCAAGACCTTCCCACGTTTCCATCCTTCTCTTCCC--CTGGGACTCCTCCCGGCTGCCCCGGCCACCTCCGTGCACCCTTCCTGGTTCGGCTGCTTCAGGAACAGAGCACAATGTCACCTCCAT------GCTCGGCAAGGTCTCCCTCATAATAG-GGAGCTCTGTGCATTCCAGGGATG--GCGACTGGTCCCCGAGCTGCACCTGGTGGGCT----------------------GGCCGTCAATCCCCCGGCCCTCCGTAACAGGCGCCCCG---CCTCCC----TTTCTCCTGCATCCCTGTCT-CCCACTATTAGTTAGGAC-CCTGCTC-TCTGGTGCTTCTAATTGGGGAGGG--TC
i otoGar3.GL873584         I 3144 C 0
e canFam3.chrX             381847 1567 + 123869142 I
e saiBol1.JH378345         269125 743 +    465904 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=63969.000000
s hg38.chrX_KI270880v1_alt 269142 40 +    284869 CCCGCCCTGCAGAGGTGGA-CCCTGTCTG---TTTTGATTTCT-G
s panTro5.chrX             454420 40 + 155549662 CCCGCCCTGCAGAGGTGGA-CCCTGTCTG---TTTTGATTTCT-G
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489549 40 + 155392059 CCCGCCCTGCAGAGGTGGA-CCCTGTCTG---TTTTGATTTCT-G
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348267 41 +    417917 CCCGCCCTGCAGAGGTGGATCCCTGTCTG----TTTGATTTCTGG
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311678 41 -   1025902 TCCGCCCTGCCGAGGTGGA-CACTGCGTG--TTTTCCATTTAT-G
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 245932 40 -    811265 TCCGCCCTGCAGAGGTGGA-CACTGTCTG---TTTCCATTTAT-G
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   292421 40 -    350446 TCCGCCCTGCCGAGGTGGA-CACTCTCTG---TTTCCATTTAT-G
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         341342 40 +  11138919 CCTGCTCTGCAGAGCTGGA-CAGTGTCTC---TTCTGATTTCT-G
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             383414 39 + 123869142 CCCGCCTCCC---GGGGGA-CCCCGCCCACGTCTTCCCTCCCC--
i canFam3.chrX             I 1567 C 0
e saiBol1.JH378345         269125 743 +    465904 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=267878.000000
s hg38.chrX_KI270880v1_alt 269182 109 +    284869 TTCCATGTCCAAGGCA-GGACATGACCCTGTTTTGGAATGCTGA-TTTATGGA----TTTTCCAGGCCACTGTGCCCCAGATACAATTTTCT-CTGACATT--AAGA--A-TACGTAGAGA
s panTro5.chrX             454460 109 + 155549662 TTCCATGTCCAAGGCA-GGACATGACCCTGTTTTGGAATGCTGA-TTTATGGA----TTTTCCAGGCCACTGTGCCCCAGATACAATTTTCT-CTGACATT--AAGA--A-TACGTAGAGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489589 109 + 155392059 TTCCATGTCCAAGGCA-GGACATGACCCTGTTTTGGAATGCTGA-TTTATGGA----TTTTCCAGGCCACTGTGCCCCAGATACAATTTTCT-CTGACATT--AAGA--A-TACGTAGAGA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348308 110 +    417917 TTCCATGTCCAAGGCA-GGACATGACCCTGTTTTGGAATGCTGA-TTTATGGA----TTTTCCAGGCCACTGTG-CCCAGATACAATTTTCTCCTGACATT--AAGA--ATTACGTAGAGA
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311719  98 -   1025902 TTCCCTGTCCAAGGCA-GGGCGTGACCCTGC--------------TTTATGGA----TTTTCCAGGCCGCTGTGCCCCAGATACAATTTTCT-CTGACATT--AAGAATA-TACATGGAGA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 245972  96 -    811265 TTCCCTGTCCAAGGCA-GGACGTGACCCTGT--------------TTTATGGA----TTTTCCAGGCCGCTCTGCCCCAGATACAATTTTCT-CTGACATT--AAGA--A-TACATGGAAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   292461  96 -    350446 TTCCCTGTCCAAGGCA-GGACGTGACCCTGT--------------TTTATGGA----TTTTCCAGGCCGCTCTGCCCCAGATACAATTTTCT-CTGACGTT--AAGA--A-TACATGGAGA
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345         269868 114 +    465904 TTCCACGTCCACGGCGTGGCCGTGGCCCTGGTTTGGAATCCTGC-TGCCGGGCGGCTTTTTCCAGGCCTCGCTGCCCCAGACACGGTTTCCT-CTGACGTC--AGGA--A-TATGTGGACG
i saiBol1.JH378345         I 743 C 0
s otoGar3.GL873584         341382 109 +  11138919 TTTCGTGTCCAGCGCA-GGACGTGACCCTCTTTTGGAATGCTGA-TTTATGGA----TTTCAGAGATGACTGTGTCCCAGATACAATTTTCT-CTGACATT--AAGA--A-TACAGTGAGA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             383453 112 + 123869142 CTCTGCTTCCAACTCA-GGACGTGACCCTCTTCCGGAGTGCTGACACTCGGAA----TTTTGTAGGCGACTCTGCCCCAGATGCCAGTTTCT-GGGACATTCGCAAA--A-CACGCAGAAA
i canFam3.chrX             C 0 I 4459
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=27704.000000
s hg38.chrX_KI270880v1_alt 269291 10 +    284869 ACCAAATGCA
s panTro5.chrX             454569 10 + 155549662 ACCAAATGCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489698 10 + 155392059 ACCAAATGCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348418 10 +    417917 ACCAAATGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311817 10 -   1025902 ACCAAATGCA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 246068 10 -    811265 ATCAAATGCA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   292557 10 -    350446 ACCAAATGCA
i manLeu1.NW_012108508v1   C 0 I 12831
s saiBol1.JH378345         269982 10 +    465904 GCCACAGGCA
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         341491 10 +  11138919 ACCAAATACA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=6209.000000
s hg38.chrX_KI270880v1_alt 269301 3 +    284869 TTT
s panTro5.chrX             454579 3 + 155549662 TTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489708 3 + 155392059 TTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348428 3 +    417917 TTT
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   311827 3 -   1025902 Ttt
i cerAty1.NW_012001098v1   C 0 I 718
s chlSab2.chrUn_KE147541v1 246078 3 -    811265 TTT
i chlSab2.chrUn_KE147541v1 C 0 I 335
s saiBol1.JH378345         269992 3 +    465904 TGT
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         341501 3 +  11138919 TTT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=10204.000000
s hg38.chrX_KI270880v1_alt 269304 21 +    284869 ---TCTTCTT--------aaaaaaaaaaaaaa
s panTro5.chrX             454582 17 + 155549662 ---TCTTCTT--------aaaaaaaaaa----
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489711 17 + 155392059 ---TCTTCTT--------aaaaaaaaaa----
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348431 17 +    417917 ---TCTTCTT--------AAAAAAAAAA----
i gorGor5.CYUI01015925v1   C 0 C 0
s saiBol1.JH378345         269995 17 +    465904 ---TCTTCTC--------GGGAAAGAAA----
i saiBol1.JH378345         C 0 I 2171
s otoGar3.GL873584         341504 28 +  11138919 TCTTCTTCTTTTTTAGGGGGGTAGAGAG----
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e chlSab2.chrUn_KE147541v1 246081 335 -    811265 I
e cerAty1.NW_012001098v1   311830 718 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=-713.000000
s hg38.chrX_KI270880v1_alt 269325 25 +    284869 ccaaaaaaaaaaaaaaaaaccaaaa
s panTro5.chrX             454599 24 + 155549662 -ccaaaaaaaaaaaaaaactcaaaa
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489728 24 + 155392059 -ccaaaaaaaaaaaaaaaaccaaaa
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348448  8 +    417917 -----------------AAACCAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         341532  1 +  11138919 --------------------C----
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e chlSab2.chrUn_KE147541v1 246081 335 -    811265 I
e cerAty1.NW_012001098v1   311830 718 -   1025902 I
e colAng1.NW_012115411v1   426512 7495 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=5607.000000
s hg38.chrX_KI270880v1_alt 269350 5 +    284869 aaCTG
s panTro5.chrX             454623 5 + 155549662 aaCTG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489752 5 + 155392059 aaCTG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348456 5 +    417917 AACTG
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 246416 5 -    811265 AACTC
i chlSab2.chrUn_KE147541v1 I 335 C 0
s colAng1.NW_012115411v1   434007 5 +   1230721 AACTC
i colAng1.NW_012115411v1   I 7495 C 0
s otoGar3.GL873584         341533 4 +  11138919 -AGTG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e cerAty1.NW_012001098v1   311830 718 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   441584 4079 +  25972781 I

a score=373813.000000
s hg38.chrX_KI270880v1_alt 269355 163 +    284869 TACTTAATAAGATCCATGCCTATAAGACAAAGGAACACCTCTTGTCATATATGTGGGACCTCGGGCAGCGTGTGAAAGTTTACTTGCAGTTTGCAGTAAAATGACAAAGCTAACACCTGGCGTGGACAATCTTACCTAGCTAT-G--CTCTCC-AAAATGTATTTTT
s panTro5.chrX             454628 163 + 155549662 TACTTAATAAGATCCATGCCTATAAGAGAAAGGAACACCTCTTGTCATATATGCGGGACCTGGGGCAGCGTGTGAAAGTTTACTTGCAGTTTGCAGTAAAATGACAAAGCTAACACCTGGCGTGGACAATCTTACCTAGCTAT-G--CTCTCC-AAAATGTATTTTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489757 163 + 155392059 TACTTAATAAGATCCATGCCTATAAGAGAAAGGAACACCTCTTGTCATATATGCGGGACCTGGGGCAGCGTGTGAAAGTTTACTTGCAGTTTGCAGTAAAATGACAAAGCTAACACCTGGCGTGGACAATCTTACCTAGCTAT-G--CTCTCC-AAAATGTATTTTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348461 164 +    417917 TACTTAATAAGATCCATGCCTATAAGAGAAAGCAACACCTCTTTTCATATATACGGGACCT-GGGCAGTGTGTGAAAGTTTACTTGCAGTTTGCAGTAAAATGACAAAGCTAACACCTGGCGTGGACAATCTTACCTAGCTATGG--CTCTCCTAAAATGTATTTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   445663 164 +  25972781 TACTTAATAAGATCCATACCCATAAGAGAAACGAACATCTCTTTTCAGACATGGGGGACCTGGGGCAGCTTGTGAACGTTTACTTGCAGTTTGCAGTACAATTCCAAAGCCAACACCTGGCGTGGACGATCTTACC-AGCTAT-GCTGTGTCT-AAAATGTGTTTTT
i macNem1.NW_012017243v1   I 4079 C 0
s cerAty1.NW_012001098v1   312548 164 -   1025902 TACTTAGTAAGATCCATACCCATAAGAGAAACGAACATCTCTTTTCAGACGTGGGGGACCTGGGGCAGCTTATGAAAGTTCACTTGCAGTTTGCAGTACAATTCCAAAGCCAACACCTGGCGTGGACGATCTTACC-AGCTAT-GCTGTGTCT-AAAATGTATTTTT
i cerAty1.NW_012001098v1   I 718 C 0
s chlSab2.chrUn_KE147541v1 246421 162 -    811265 TACTTAATAAGATCCATGCCTGTAAGAGAAATGAACATCTCTTTTCAGACATGTGGGACCTGGGGCAGCTTGTGAACGTTTACTTGCAGTTTGCAGTAGAATTCCAAAGCCAACACCTGGCGTGGACGATCTTACC-AGCTAT-G--ATGTCT-AAAATGTATTTTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   434012 162 +   1230721 TACTTAATAAGATCCATGCCTGTAAGAGAAACGAACATCTCTTTTCAGACATGTGGGACCTGGGGCAGCGTGTGAAAGTTTACTTGCAGTTTGCACTAAAATTACAAAGTCCACACCTGGCATGAATGATCTTACC-AGCTAT-G--CTGTCT-AAAATGTATTTTT
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         341537 140 +  11138919 TGCTTAATAAGATCCTTGCCTGTAAGAGAAACTAACACTTCTTTTCCAACTGGCCAGACCTAAGGC------------------CACAATTGGCAGTAAAATTACTAAG----CAGCCAGCCTGTGCAATTGTCCT-GGCTCT-G--TTCCCT-AACAGTTATTTTT
i otoGar3.GL873584         C 0 I 1569
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=679869.000000
s hg38.chrX_KI270880v1_alt 269518 318 +    284869 TCTAATCTGGGCAAcaatggtgccatctcggttca-ctgcaacctccgcttcccaggttcaagcgattctccggcctcagcctcccaagtagctgggaggacaggcacccgccatgatgcccggttaatttttgtatttttagcaga-gatggg-ttttcgcc-atgttggccaggctggtctcgaactcct-gacctcaggtgatccgcctgccttggcc-tcccaaagtgctggga----tgacaggcgtgagccaccgcgcccagccAGGAATCTATGCATTTGCCTTTGAATAT-TAGCCTCCACTGCCCCATCAGCAAAAGGC-----------------------------------------------------------------------------A
s panTro5.chrX             454791 348 + 155549662 TCTAATCTGGGCAAcaatggtgccatctcggttca-ctgcaacctccgcttcccaggttcaagcgattctccggcctcagcctcccaagtagctgggattacaggcacccgccatcatgcccggttaatttttgtatttttagcaga-gatggg-tttttgcc-atgttggccaggctggtctcgaactcct-gacctcagatgatccgcctgccttggcc-tcccaaagtgctggga----tgacaggcgtgagccaccgcacccagccAGAAATCCATGCATTTGCCTTTGAATAT-TAGCCTCCACTGCCCCATCAGCAAAAGACAACCAACATCCTCAGCA-----------------------------------------------GAAAATCAGAGAAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             489920 348 + 155392059 TCTAATCTGGGCAAcaatggtgccatctcggttca-ctgcaacctccgcttcccaggttcaagcgattctccggcctcagcctcccaagtagctgggattacaggcacccgccatcatgcccggttaatttttgtatttttagcaga-gatggg-tttttgcc-atgttggccaggctggtctcgaactcct-gacctcagataatccgcctgccttggcc-tcccaaagtgctggga----tgacaggcgtgagccaccgcacccagccAGAAATCCATGCATTTGCCTTTGAATAT-TAGCCTCCACTGCCCCATCAGCAAAAGACAACCAACATCCTCAGCA-----------------------------------------------GAAAATCAGAGAAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348625 352 +    417917 TCTAATCTGGGCAAcaatggtgccatctcggttcacctgcaacctccacttcccaggttcaagcgattctccggcctcagcctcccaagtagctgcgattacaggcacccgccatcatgcccggttaatttttgtatttttagcagacgatgggttttttgccaatgttggccaggctggtctcgaactcctggacctcagatgatccgcctgccttggcc-tcccaaactgct-gga----tgacaggcgtgagccaccgcgcccagccAGGAATCCATGCATTTGCCTTTGAATATGTAGCCTCCACTGCCCCATCAGC-AAAGACAACCAACATCCTCAGCA-----------------------------------------------GAAAATCAGAGAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   445827 368 +  25972781 TCCAGCCTGGGCAACGGGGATTTCATGAcagctca-cggcaacctctgcctcccgggttcaaacgattctcctgcctcagcttcccagatagctgggacgacaggcacccgccaccacgcccggctaatttttgtatttttagcaga-gatggg--tttcacc-acgttggccaggctggtctcgaactcgt-gacctcaggggatcc-cccgcctcgtccttcccaaaatgctgggatgactgacaggcgtgagccaccgcacccggccAGAAATCTATGCATTTGCCTTTGAATAT-TAGCCTCCACCGCCCCATCACC-AAAGAT-ACCAACATCCTCAGaaaaacaaaacaaaacaaaac----------------------------aaaaaaCGGAGAAA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   312712 395 -   1025902 TCCAGCCTGGGCAACGGGGATTTCATGATAgctca-cggcaacctctgcctcccgggttcaagcgattctcctgcctcagcttcccaaatagctgggatgacaggcagccgccactgtgcccggctaatttttgtatttttagcaga-gatgag-ttttcacc-acgttggccaggctggtctcgaactcgt-gacctcaggggatccgcccgcctcatccttcccaaagtgttggga----tgacaggcgtgagccaccgcacccggccAGAAATCTATGCATTTGCCTTTGAATAT-TAGCCTCCACCGCCCCATCACCAAAAGAT-ACCAACATCCTCAGAAaaacaaaacaaaacaaagcaaaacacacacacacacacacacaaaaaaaaaaacCGGAGAA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 246583 372 -    811265 TCCAGCCTGGGTAACGGAGATTTCTTGAcagctca-cggcaacctctacctcccaggttcaagagattctcctgcctcagcttcccaaatagctgggatgacaggcacctgccaccgtgcccggctaatttttgtatttttagcaga-gatggg-ttttcacc-acgttggccaggctggtctggaactcgt-gacctcaggggatccgcccacctcatccttcccaaagtgctggga----tgacaggcgagagtcaccacacctggccAGAAATCTATGCATTTGCCTTTGAATAT-TAGCCTCCACTGCCCCATCACCAAAAGAT-ACCAACATCCTCAGAaaaacaaag-----------------------caaaacaaaacaaaacaaaTGCAGGAGAAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   434174 356 +   1230721 TCCAGCCTGGGCAATGGAGATTTCATGAGAgctca-cggcaacatctgcctcccaggttcaagcgattctcctgcctcagcttcccaaatagctgggattacaggtacccgccaccgtgcctggctaatttttgtatttttagcaga-gagggg-ttttcacc-acgttggccaggctggtctcgaactcct-gacctcagaggatccgcccacctcgtccttcccaaagtgctggga----tgacaggcgtgagccaccgcacccggccAGGAATCTATGCATTTGCCTTTGAATAT-TAGCCTCCACTGCCCCATCACCAAAAGAT-ACCAACATCCTCAGaaaaaaaaaa---------------------------------------aaaaaaacgagaaa
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         341677 1569 +  11138919 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=256628.000000
s hg38.chrX_KI270880v1_alt 269836 114 +    284869 AAACAGGTTACCAGCCTCCC--GCCACCCCTGAAGAAT-AATT---GTG-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTTGCTGAGGTTATAAGCCACTTCCTTCATCTGGGT
s panTro5.chrX             455139 114 + 155549662 AAACAGGTTACCAGCCTCCC--GCCACCCCTGAAGAAT-AATT---GTG-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTTGCTGAGGTTATAAGCCACTTCCTTCATCTGGGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490268 114 + 155392059 AAACAGGTTACCAGCCTCCC--GCCACCCCTGAAGAAT-AATT---GTG-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTTGCTGAGGTTATAAGCCACTTCCTTCATCTGGGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   348977 120 +    417917 AAAGAGGTTACCAGCCTCCCCAGCCACCCTGAAGAAATAAATT---GTGAAAAAAACGTGGAATTTAGCAACATGTTGGCAGGATTTTTTGCTGAGGTTATAAGCCACTTCCTTCATCTGGGT
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   446195 114 +  25972781 AGACAGGTTACCAGCCTCCT--GCCACCCCTGAACAAT-AAAT---GGA-AAAAAATGTGGAA-TTAGCACCATGTTGGCAGGA-TTTTGGGTGAGGTTATAAGGCGCTTCCTTCATCTGGAG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   313107 115 -   1025902 AAACAGGTTACCAGCCTCCT--GCCACCCCTGAAGAAT-AAATG--GGA-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTGGGTGAGGTTATAAGGCGCTTCCTTCATCTGGAG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 246955 117 -    811265 AAACAGGTTACCAGCCTCCC--GCCACCCCTGAAGAAT-AAATGGAAAA-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTGGGTGAGGTTATAAGGCGCTTCCTTCATCTGGAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   434530 114 +   1230721 aaaCAGGTTACCAGCCTCCC--GCCACCCCTGAAGAAT-AAAT---GGA-AAAAAATGTGGAA-TTAGCAACATGTTGGCAGGA-TTTTGGGTAAGGTTATAAGGCACTTCCTTCATCTGGAG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         343246 102 +  11138919 AAAGAGGCTGCCACCTGCCC--GCCGCTC-TGGGGGAC-AA-----ACA-CAAAGATGTGAGA-GCAGCAGGGTGTGG---GGC-------CTGAGGTCAGAAGCCACTTCTTCCCTCTGTGT
i otoGar3.GL873584         I 1569 I 330
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=761653.000000
s hg38.chrX_KI270880v1_alt 269950 379 +    284869 CTGAGCTTTTTTGTATTCGGTCTTACCATTCGTTGGTTCTGTAGTTCATGTTTCAAAA-ATGCAGCCTCAGAGACTGCAAGCCGCTGAGTCAAA--TACAAATAGATTTTTAAAGTGTATTTA-TTTt----aaacaaaa-a---ataaaatcacacataagataaaacaaaacgaaactgactttatacag-taaaataaaCGATGCctgggcacagtggctcacg-cctgtcaacccagcactttgggaggctgaggcgggtcgatcacctgaggttaggagttcaagaccagtctggccaacttagtgaaactcccg--tctactaaaaacacacaaattggctggatgtggtggcagatgcctgtaatcccagctacacaggaggctgagg
s panTro5.chrX             455253 378 + 155549662 CTGAGCTTTTTTGTACTCGGTCTTACCATTCGTTGGTTCTGTAGTTCATGTTTCAAAA-ATGCAGCCTCAGAGACTGCAAGCCGCTGAGTCAAA--TACAAATAGATTTTTAAAGTGTATTTA-TTTT----aaacaaaa-------aaaatcacaaataagataaaacaaaatgaaactgactttatacag-taaaataaaCGATGCctgggcacagtggctcacg-cctgtcaacccagcactttgggaggctgaggcgggtggatcacctgaggttaggagttcaggaccatcctggccaacttagtgaaactcccgtctctactaaaaccacacaaattggctggatgtggtggcagatgcctgtaatcccagctacacaggaggctgagg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490382 380 + 155392059 CTGAGCTTTTTTGTACTCGGTCTTACCATTCGTTGGTTCTGTAGTTCATGTTTCAAAA-ATGCAGCCTCAGAGACTGCAAGCCGCTGAGTCAAA--TACAAATAGATTTTTAAAGTGTATTTA-TTTT----aaacaaaa-----ataaaatcacaaataagataaaacaaaacgaaacTGACTTTAGACAG-TAAAATAAACGATGCctgggcacagtggctcacg-cctgtcaacccagcactttgggaggctgaggcgggtggatcacctgaggttaggagttcaagaccatcctggccaacttagtgaaactcccgtctctactaaaaccacacaaattggctggatgtggtggcagatgcctgtaatcccagctacacaggaggctgagg
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349097 381 +    417917 CTGAGCTATTTTGTATTCAGTC-TACCATTCGTTGGTTCTGTAGTTCATGTTTCAAAA-ATGCAGCCTCAGAGACTGCAAGCCGCTGAGTCAAA--TACAATCAGATTTTTAAAGTGTATTTATTTTT----AAACAAAAAA---ATAAAATCACAAATAAGATGAAAC-AAACGAAGCTGACTTTATACAGTTAAAATAAACGATGCctgggcacagtggctcacg-cctgtcaaccc-gcactttgggaggctgaggcgggcggatcacctgaggttaggagttcaagaccatcctggccaacttagtgaaactcccgtctctactaaaaatacacaaattggctggatgtggtggcagatgcctgtaatcccagctacacaggaggctgagg
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   446309 390 +  25972781 CTGAGCTTTTATGTCTTGAGTTTGACCATTCCTTGGTTCTGTATTTCATGTTTTAAAATATGCACCCTCAGAGACCGCGTGCCGGTGAGTCAAATATACAAACAGATTTTTAAAGTGTATTTA-TTTTaaacaaacaaacaaac-aaacaGTCACAAATGAGGTAAAACAAAGTGAAACTAACTTTATACAG-TAAAATAAACGATggccgggcgcaatatctcatgccctgtcatcccagcactttgggaggctgaggcgggaggatcccctgaggttgggagttcgagaccagcctgaccaacacggtgaaac-cccgtctctactaaaagtacaaaaattagccgggtgtggtggc-ggcacctgtagtcccagctactcgggaggctgagg
i macNem1.NW_012017243v1   C 0 I 321
s cerAty1.NW_012001098v1   313222 386 -   1025902 CTGAGCTTTTATGTCTTGAGTTTGACCATTCCTTGGTTCTGTATTTCATGTTTTAAAATATGCACCCTCAGAGACCGCGTGCCGGTGAGTCAAATATACAAACAGATTTTTAAAGTGTATTTA-TTTT----AAAGACACAAAC-AGAAAGTCACAAATGAGGTAAAACAAAATGAAACTAACTTTATACAG-TAAAATAAACGATggccgggcgcggtggctcacg-cctgtcatccgagcactgtgggaggcggaggcaggtggattacctgaggtcaggagttcaagaccagcctggccaacatggtgaaac-cccgtttctactaaaaatacaaaaattagccgggcatggtggcaggtgactgtcatcccagctactcgggaggctgagg
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 247072 386 -    811265 CTGAGCTTTTATGTCTTGAGTTTGAGCATTCCTTGGTTCTGTATTTCATGTTTTAAAATATGCACCCTCAGAGACCGCGTGCCGGTGAGTCAAACGCACAAAAAGATTTTTAAAGTGTATTTA-TTTT----AAACAAACAAAC-GAAAAGTCACAAATGAGGTAAAACAAAATGAAACTAACTTTATACAG-TAAAATAAACGATggccgggcgtggtggctcaca-cctgtcatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcaagaccagcctgaccaacatggtgaaac-cccgtctctactaaaaatacaaaaattagccgggcgaggtggcgggtgcctgtagtcccagctactcgggaggctgagg
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   434644 389 +   1230721 CTGAGCTTTTATGTCTTGAGTTTTACCATTCCTTGGTTCTGTATTTCATGTTTTAAAATATGAACCTTCAGAGACCACATGCCGGTGAGTCAAATATACAAATAGATTTTTTAAGTGTATTTA-TTTTTA--aaaaaaacaaacaaaaaaatcacaaatgaggtaaaacaaaatgaaactaactttataagg-taaaataaacgatggtcgggcgtggtggctcacg-cctgtcatcccagcactttgggaggccgaggcaggcggatcacctgaggtcgggagttcaagaccagcctggccaacatggtgaaac-tccgtgtctactaaaaatacaaaaattgcctggatgtggtggcacacgcctgtagtcccagttactcgggaggctgagg
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343348 330 +  11138919 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=246393.000000
s hg38.chrX_KI270880v1_alt 270329 114 +    284869 caggagaatcacttgaacccaggaggcggaggttgcagtgagccgagatcgtgtcactgcactccagcctgggtgacagagtgagactctgtctc-aaaaatataagtaaataaa
s panTro5.chrX             455631 114 + 155549662 caggagaatcacttgaacccaggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcctgggtgacagagtgagactctgtctc-aaaaatataagtaaataaa
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490762 114 + 155392059 caggagaatcacttgaacccaggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcctgggtgacagagtgagactctgtctc-aaaaacataagtaaataaa
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349478 113 +    417917 caggagaatcacttgaa-ccaggaggcggaggttgcagtgagccgagatcgtgcccctgcactccagcctgggcgacagagtgagactctgtccc-aaaaatataagtaaataaa
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   447020 114 +  25972781 caggagaatcacttgaacccgagaggcggaggttgcggtgagccgagatcgcaccactgcactccagcctgggcaatggagctaggctctgtctc-aaaaaTataagtacataaa
i macNem1.NW_012017243v1   I 321 C 0
s cerAty1.NW_012001098v1   313608 115 -   1025902 caggagaatggcgtaaacccgggagatggaggttgcagtgagccgagatccggccactgcactccagcctggggcacagagcgagactctgtctcaaaaaatataaataaataaa
i cerAty1.NW_012001098v1   C 0 I 28
s chlSab2.chrUn_KE147541v1 247458 115 -    811265 caggagaatggcgtgaacccgggagatggaggttgcagtgagccgagatcgcaccactgcactccagcctgggccacagagtgagactctgtctcaaaaaatataaataaataaa
i chlSab2.chrUn_KE147541v1 C 0 I 28
s colAng1.NW_012115411v1   435033 114 +   1230721 caggagaattgcttgaacctgggaggcagagattgcagtgagccgagatcacaccactgaactccagcctgggtgacagagcgagactctgtctc-aaaaatataagtacataaa
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343348 330 +  11138919 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=7020.000000
s hg38.chrX_KI270880v1_alt 270443 11 +    284869 taaat-aaaaTA
s panTro5.chrX             455745 11 + 155549662 taaat-aaaaTA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490876 11 + 155392059 taaat-aaaaTA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349591 12 +    417917 taaataaaaaTA
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   447134 11 +  25972781 taaat-aacata
i macNem1.NW_012017243v1   C 0 C 0
s colAng1.NW_012115411v1   435147  6 +   1230721 ----t-aa-ata
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343348 330 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=78721.000000
s hg38.chrX_KI270880v1_alt 270454 49 +    284869 AAATAAACAATCTTCCTGC-TCAAAATTGAGGGCATTTTTGTTGAGATAG
s panTro5.chrX             455756 49 + 155549662 AAATAAACAATCTTCCTGC-TCAAAATTGAGGGCATTTTTGTTGAGATAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490887 49 + 155392059 AAATAAACAATCTTCCTGC-TCAAAATTGAGGGCATTTTTGTTGAGATAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349603 49 +    417917 AAATAAACAATCTTCCTGC-TCAAAATTGAGGGCATTTTTGTTGAGATAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   447145 49 +  25972781 aaataaacaaTCTTCATGC-TTAAAATTGGGGGCATTTTTGTCGAGACAG
i macNem1.NW_012017243v1   C 0 C 0
s colAng1.NW_012115411v1   435153 49 +   1230721 aaataaacaaTCTTCCTGC-TTAAAATTGGGGGCATTTTTGTTGAGATAG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         343678 50 +  11138919 AAAGAACAAATCCTCCAGTGTTAAAGTTGCAGGCATTTTTGTTGAGATGG
i otoGar3.GL873584         I 330 I 2113
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=10274.000000
s hg38.chrX_KI270880v1_alt 270503 10 +    284869 ATTCATTCA-G
s panTro5.chrX             455805 10 + 155549662 ATTCATTCA-G
i panTro5.chrX             C 0 C 0
s panPan2.chrX             490936 10 + 155392059 ATTCATTCA-G
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349652 11 +    417917 ATTCATTCAGG
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   447194 10 +  25972781 CTTCATTCA-G
i macNem1.NW_012017243v1   C 0 I 8939
s colAng1.NW_012115411v1   435202 10 +   1230721 CTTCATTCA-G
i colAng1.NW_012115411v1   C 0 I 1029
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343728 2113 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I

a score=180452.000000
s hg38.chrX_KI270880v1_alt 270513 364 +    284869 AGTGAGACTCTCACCTCCTACTTCTGTTTTTTTCTGA------------TTTATTTTTATTTTTTTGCTACCTCTGTAGCGACGTT-TTCATTGCTGGAGCACGGGTGAGA-CTATGTCTTTAGACTTCTCCCTCTCCTTCCCCTAAGCCTCCAACGCGTGCTAAAGTGCAAAAAACACCTGAGTCCAAACAGCCTggccgggtgcagtggctcatgcctgt-catcccagcacgttgggagcctgaagtgggtgg-atcacccgaagtc--agcagttcgagaccagcctggccaacacggtgaaaccccgtctctattaaaaatacg-aaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggaggt
s panTro5.chrX             455815 376 + 155549662 AGTGAGACTGTCACCTCCTACTTCTGTTTTTTTCTGAtttatttttatttttatttttatttttTTGCTACCTCTGTAGTGACGTT-TTCATTGTTGGAGCACGGGTGAGA-CTATGTCTTTAGATTTCTCCCTCTCCTTCCCCTAAGCCTCCAATGCGTGCTAAAGTGCAAAAAACGCCTGAGTCCAAACAGACTggccgggtgcggtggctcatgcctgt-catcccagcacgctgagagcctgaagtgggtgg-atcacccgaaggc--agcagttcgagaccagcctggccaacacggtgaaaccccgtctctattaaaaatacg-aaaattagccgggcatggtggcgcatgcctgtaatcccagccacttgggaggt
i panTro5.chrX             C 0 I 273
s panPan2.chrX             490946 374 + 155392059 AGTGAGACTGTCACCTCCTACTTCTG-TTTTTTCTGAtttatttttatttttatttttatttttTTGCTACCTCTGTAGCGACGTT-TTCATTGTTGGAGCACGGGTGAGA-CTATGTCTTTAGATTTCT-CCTCTCCTTCCCCTAAGCCTCCAATGCGTGCTAAAGTGCAAAAAACGCCTGAGTCCAAACAGACTggccgggtgcggtggctcatgcctgt-catcccagcacgctgagagcctgaagtgggtgg-atcacccgaaggc--agcagttcgagaccagcctggccaacacggtgaaaccccgtctctattaaaaatacg-aaaattagccgggcatggtggcgcatgcctgtaatcccagccacttgggaggt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   349663 374 +    417917 AGCAAGACTCTCACCTCCTCCTTCTGtttttttctgatt--------tttttttttttttttttttGCTACCTGTGTAGCGACGTTATCCATTGCTGGAGCACGGGTGAGACCTATGTCTTTAGACTTCTCCCCTCCTTCCCCCTAAGCCTCCAACGCGTGCTAAAGTGC-AAAAACACCTGAGTCCAAACAGCCTggccgggtgcagtggctcatgcctgtccatcccagcacgctgggagcctgaagtgggtggaatcacccgaaggtcaggcagtttgagaccagcctggccaacacggtgaaaccctgtctctattaaaaatacgaaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggaggt
i gorGor5.CYUI01015925v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343728 2113 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573  28 -    811265 I
e cerAty1.NW_012001098v1   313723  28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=131925.000000
s hg38.chrX_KI270880v1_alt 270877 301 +    284869 tgaggca-ggagaatcgcttgaacccagggggtggagg-gtgcagtgagctgagattgtgccactgc--------------------------------------------------------------------------------------------actccagcctgggtgacagagtgagactgtgtctcaaaaaaaaaaaaaaaaaaa--------------------------gaaagaaagaaAAGAAAAAGCAAGAAATGGC-AGGGATA-TGGTTTGT-CTTCAGAACCATGGTGGAGA-GAAGATtgtgtgagtt-cctgaggctgtcagaacaaaagaccatgacctcagagtgg-gaaggtcaaaac-agcagagattcatcctctcccagctgtggagaac-agcagtctgtgatc
s panTro5.chrX             456464 327 + 155549662 tgaggca-ggagaatcgcttgaacccagggggtggagg-gtgcagtgagctgagattgtgccactgc--------------------------------------------------------------------------------------------actccagcctgggtgacagagtgagactgtgtctcaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaaAGGAAAAGCAAGAAATGGC-AGGGATA-AGGTTTGT-CTTCAGAACCATGATGGAGA-GAAGATtgtgtgagtt-cctggggctgtcagaacaaatgaccgtgacctcagagtgg-gaaggtcaaaac-agcagagattcatcctctcccagctgtggagaac-agcagtctgtgatc
i panTro5.chrX             I 273 C 0
s panPan2.chrX             491320 404 + 155392059 tgaggca-ggagaatcgcttgaacccagggggtggagg-gtgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagacgaggcaggagaatcgcttgaacccagaggggtggagggtgcagtgagccgagattgtgccactgaactccagcctgggtgacagagtgagactgtgtctcaaaaaaaaaaaaaaaaaaa---------------agaaaaagaaagaaagaaagaaaagaaaaagcaagaaaTGGC-AGGGATA-AGGTTTGT-CTTCAGAACCATGATGGAGA-GAAGATtgtgtgagtt-cctggggctgtcagaacaaatgaccgtgacctcagagtgg-gaaggtcaaaac-agcagagattcatcctctcccagctgtggagaac-agcagtctgtgatc
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   350037 300 +    417917 tgaggcagggagaatcgcttgaacccagggggtggaggcgtgcagtgagccgagattgtgccactgc--------------------------------------------------------------------------------------------actccagcctgggtgacagagtgagactgtgtctcaaaaaaaa-------------------------------------aagagaaagaaaagaaaaaaGCAGAAATGGCAAGGGATATAGGTTTGTCCTTCAGAACCATGGTGGAGAGGGGGATtgtgtgagttccccggggctgtcagaacaaatgaccatgacctcacagtggagaaggtcaaaaagagcagagattcatcctctcccagctctggagaacaagcagtctgtgatc
i gorGor5.CYUI01015925v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         343728 2113 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573  28 -    811265 I
e cerAty1.NW_012001098v1   313723  28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=27538.000000
s hg38.chrX_KI270880v1_alt 271178 49 +    284869 cagctgtctgaggaccttcctcccatc--------------------------agaagctctaggggaggctcct
s panTro5.chrX             456791 49 + 155549662 cagctgtctgaggaccttcctcccatc--------------------------agaagctctaggggagggtcct
i panTro5.chrX             C 0 C 0
s panPan2.chrX             491724 49 + 155392059 cagctgtctgaggaccttcctcccatc--------------------------agaagctctaggggagggtcct
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   350337 51 +    417917 cagctgtctgaggaccatgcctccctcca------------------------agaagctctaggggagggtcct
i gorGor5.CYUI01015925v1   C 0 I 673
s otoGar3.GL873584         345841 75 +  11138919 catctatttggggatctccattcaacccatcacaGTTGTATCCAgttccttctggaggtcccagggaaggctcct
i otoGar3.GL873584         I 2113 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=546.000000
s hg38.chrX_KI270880v1_alt 271227 1 +    284869 t
s panTro5.chrX             456840 1 + 155549662 t
i panTro5.chrX             C 0 C 0
s panPan2.chrX             491773 1 + 155392059 t
i panPan2.chrX             C 0 C 0
s otoGar3.GL873584         345916 1 +  11138919 t
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I
e gorGor5.CYUI01015925v1   350388 673 +    417917 I

a score=426013.000000
s hg38.chrX_KI270880v1_alt 271228 795 +    284869 cctgcctctcccagct-cctgggggctccaggtgtccctgggcttgtggccgcatcactccagtctctgcctccatctccacgtggccttctcctctgtgtctgcgtctcctcttctgtctcttacagggacacctgtcattgtatttagggcccagccctaaatggagtaccaggatgacctcatta------taactaactatatctgcagagaccgtagttccaaataagtcacCCGTCCTGGGTTCCAG------ATGAAATTATTTGTGTGGGGG-AGATATTATTCCACCTG-CTACGCAGGATGATTTGTTTTCCTCACTATCAGTGA-TTGAGATTAACATGTTTCTGTGCTTGGTTAGAGAAATGTAGGATGCTGTTCTGTCTCCTGCTCtttttttttttttttttttttttgaggtggagtcctgctctgttgcccaggctggaggacaatggtgcaatcttggttcactgcaacttccacctccatggttcaaggaattcccctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccatgtccagctaattgttttgtgtttttagtagagatgggatttcgccatgttggccaggctggtctcgaactcctgacctcagatg-atccgcccg-cctcggcctcccaacgtgc---tgggatgacaggtgtgagccactgtgcctggccCTGCTGTATCTTATGCACAT-AAAAATCTGTGAGAACTTTCCTTAGGTGA-TCATCCAAGCCTCAGGGGTCTGAGCAATGGC-TTTTTGCTGTAAAAGTCAGACGTGG
s panTro5.chrX             456841 796 + 155549662 cctgcctctcccagct-cctgggggctccaggcatccctgggcttgtggccacatcactccagtctctgcctccgtctccacgtggcctcctcctctgtgtctgtgtctcctcttctgtctcttacagggacacctgtcattgtgtttagggcccagccctaaatggagtaccaggatgatctcacta------taactaactatatctgcagagaccgtagttccaaataagtcacCCATCCTGGGTTCTAG------ATGAAATTATTTGTATGGGGGGAGATATTATTCCACCTG-CTACGCAGGATGATTTGTTTTCCTCACTATCAGTGA-TTGAGATTAGCATGTTTCTGTGCTTGGTTAGAGAAATGTAAGATGCCGTTCTGTCTCCTGCTCtttttctttttttttttttttttgagatggagtcctgctctgttgcccaggctggaggacaatggtgcaatcttgccccactgcaacctccacctccatggttcaagaaattcccctgcctcagcctcccgagtagctgcgattacaggtgcgtgccaccatgtccagctaattgttttgtgtttttagtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcagatg-atccgcccg-cctcggcctcccaacgtgc---tgggatgacaggtgtgagccactgcgtctggccCTGCTGTATCTTATGCACAT-AAAAATGTGTGAGAACTTTCCTTAGGTGA-TCCTCCAAGCCTCAGGGGTCTGACCAATGGC-TTTTTGCTGTAAAAGTCAGACGTGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             491774 793 + 155392059 cctgcctctcccagct-cctgggggctccaggcatccctgggcttgtggccacatcactccagtctctgcctccgtctccacgtggcctcctcctctgtgtctgtgtctcctcttctgtctcttacagggacacctgtcattgtgtttagggcccagccctaaatggagtaccaggatgatctcacta------taactaactatatctgcagagaccgtagttccaaataagtcacCCATCCTGGGTTCTAG------ATGAAATTATTTGTATGGGGGGAGATATTATTCCACCTG-CTACGCAGGATGATTTGTTTTCCTCACTATCAGTGA-TTGAGATTAGCATGTTTCTGTGCTTGGTTAGAGAAATGTAAGATGCCGTTCTGTCTCCTGCTCttt---tctttttctttttttttgagatggagtcctgctctgttgcccaggctggaggacaatggtgcaatcttggttcactgcaacctccacctccatggttcaagaaattcccctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccatgtccagctaattgttttgtgtttttagtagagacgggatttcgccatgttggccaggctggtctcgaactcctgacctcagatg-atccgcccg-cctcggcctcccaacgtgc---tgggatgacaggtgtgagccactgcgtctggccCTGCTGTATCTTATGCACAT-AAAAATGTGTGAGAACTTTCCTTAGGTGA-TCCTGCAAGCCTCAGGGGTCTGACCAATGGC-TTTTTGGTGTAAAAGTCAGACGTGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   351061 798 +    417917 cctgcctctcccagctacctgggggctccaggcgtccctgggcctgtggccgcatcactccagtctctgcctccgtctccacgtggcctcctcctctgtgtctgtgtctcctcttctgtctcttacaaagacacctgtcattgtatttagggcccagccctaaatggagtaccacgatgacctcatta------taactaactgtatctgcagagaccgtagttccaaataagtcacCCATCCTGGGTTCCAG-----AATGAAATTATTTGTGTGGGGG-AGATATTATTCCAGCTGACTACACAGGATGATTTGTTTTCCTCACTATCAGTGATTTGAGATTAGCATATTTCTGTGCTTGGTTAGAGAAATGTAAGATGCCGTTCTGTCTCCTGCTCttt---------tttttttttttgagatggagtcctgctctgttgcccaggctggaggacaatggcgcaatcttggttcactgcaacgtccacctccatggttcaagaaattcccctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccatgtgcagctaattgttttgtgtttttagtagagacgggatttcaccatgttggccaggctggtctcgaactcctgacctcagatgaatccacccgccctcggcctcccaatgtgcgtgggggatgacaggtgtgagccactgcgcctggccCTGCTGTATCTTATGCACATAAAAAATCTGTGAGAACTTTCCTTAGGTGATTCCTCCAAGCCTCAGGGGTCTCACCAATGGCTTTTTTGCTGTAAATGTCAGACGTGG
i gorGor5.CYUI01015925v1   I 673 C 0
s otoGar3.GL873584         345917 473 +  11138919 cctgcctctcccagct-cct-ggggcaccaggtatccctgggcttgtggccacatcactccagtctctgcctccatctccacatgg-cttctcctctgtgtctgtgtctcctctgctgtctcttgtgagttcactggtcactgggtttaggg---gagtctaacttaggt----cgatgttatcttgagattcttcactcattccctctgccaagaccctatttccaaattagggtctattcCCTGGTTCCTGTTCTATATAAAGT--TTTGT--------TGAAATGACCCAACTCA-ATACAAAGAGGGATTT--------------------------------------------------------------------------TCTCCAGCTATTT-------------------------------------------CCAGG------------------------------------------------------------------------------------------------GATGTGTGTTGACAT-------------TTTTTTTTCTTAATTAGGGAAAAG----------------------------------------TAAGATG-AT---TCTG-TCT---------------------------------------------------CCAGCTCCATCCTTTGCAGGG-ACAAGCCCATGGGAATTGTACTCAGATGA-GCATCAGAATCTTAGTGGTCTGAGCCAGAAT-GTTTCCTGGTAGGGGTGAGATGTGG
i otoGar3.GL873584         C 0 I 3222
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e chlSab2.chrUn_KE147541v1 247573  28 -    811265 I
e cerAty1.NW_012001098v1   313723  28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=147773.000000
s hg38.chrX_KI270880v1_alt 272023 307 +    284869 ggccgggcgcggtggctcacgcctgtcatcccagcactttgggaggctgaggcgggc-gggtcacgaggtcaggagatcgagaccatcctggctaa-cacggtg-caaccccgtctctactaaaaatacaaaaaa-ttagccgggcgtggtggcgggcgcctgtagtgccagctactcgggaggctgaggcaggaggatggtgcgaaccc-gggaggtggagcttgcagtgagcccagatcgcgccactgcactccagcctgggcgacagagcaagactccatcttaaataaataaataaataaataaataa
s panTro5.chrX             457637 308 + 155549662 ggccgggcggggtggctcacgcctgtcatcccagcactttgggaggctgaggtgggc-ggatcacgaggtcaggagattgagtccatcctggctga-cacggtg-aaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtgccagctactcgggaggctgaggcaggaggatggtgtgaacca-gggagttagagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagcaagactccagctcaaataaataaataaataaataaataa
i panTro5.chrX             C 0 C 0
s panPan2.chrX             492567 300 + 155392059 ggccgggcggggtggctcacgcctgtcatcccagcactttgggaggctgaggtgggc-ggatcacgaggtcaggagatcgagtccatcctggctga-cacggtg-aaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggaggatggtgtgaacca-gggagttagagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacggagcaagactccagctcaaataaataaataaataa--------
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   351859 308 +    417917 ggccgggcgcgg-ggctcacgcctgtaatcccagcacttcgggaggctgaggcgggcgggatcacgaggtcaggagatcaagtccatcctggctaagtacggtgccaaccccgtctctactaaaaatacaaaaaa-ttagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcatgaggatggtgtgaaccaggggagttagagcttgcagtgagccaagattgcgccattgcactccagcctgggcgacagggtgagactccatctcaaataaat--ataaataaataaataa
i gorGor5.CYUI01015925v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573  28 -    811265 I
e cerAty1.NW_012001098v1   313723  28 -   1025902 I
e colAng1.NW_012115411v1   435212 1029 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=5713.000000
s hg38.chrX_KI270880v1_alt 272330 42 +    284869 ataaataaataa--ataataaataaatgaataat---aaaaataaaC-----
s panTro5.chrX             457945 31 + 155549662 ataaataaataa--ataa-----------ataat---aaaaataaaC-----
i panTro5.chrX             C 0 C 0
s panPan2.chrX             492867 15 + 155392059 -----------------------------ataat---aaaaaTAAAC-----
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352167 26 +    417917 ataaataaataa-----------------ataat----aaaataaat-----
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   436241 41 +   1230721 ataaataaataaaaataa-----------aTAAATGCATAAATAAATAAAAG
i colAng1.NW_012115411v1   I 1029 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247573 28 -    811265 I
e cerAty1.NW_012001098v1   313723 28 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=8022.000000
s hg38.chrX_KI270880v1_alt 272372 4 +    284869 TCAG
s panTro5.chrX             457976 4 + 155549662 TCAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             492882 4 + 155392059 TCAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352193 4 +    417917 TCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   313751 4 -   1025902 TCAG
i cerAty1.NW_012001098v1   I 28 C 0
s chlSab2.chrUn_KE147541v1 247601 4 -    811265 TCAG
i chlSab2.chrUn_KE147541v1 I 28 C 0
s colAng1.NW_012115411v1   436282 4 +   1230721 TCAG
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   292567 12831 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=243080.000000
s hg38.chrX_KI270880v1_alt 272376 120 +    284869 ACGT-GGACGCCAAGCTGCCACGCGCACAGATTAGCCTGCGTCAGACGACCGGAGAGACTGGCTGCGTAGAATCCTCGTTGCCTTTGACTCCTGTCACCTTTACACGCCGGAAAGCC--CTGG
s panTro5.chrX             457980 120 + 155549662 ACGT-GGACGCCAAGCTGTCACGTGCACAGATTAGCCTGCGTCAGACGACCGGAGAGACTGGCTGCGTAGAATCCTCGTTGCCTTTGACTCCTGTCACCTTTACACGCCGGAAAGCC--CTGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             492886 120 + 155392059 ACGT-GGACGCCAAGCTGCCACGCGCACACATTAGCCTGCGTCAGACGACCGGAGAGACTGGCTGCGTAGAATCCTCGTTGCCTTTGACTCCTGTCACCTTTACACGCCGGAAAGCC--CTGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352197 123 +    417917 ACGTGGGACGCCAAGCTGTCATGCGCACAGATTAGGCTGCGTCAGACGACCGGAGAGACTGGCTGTGTAGAATCCTCGTTTGCTTTGACTCCTGTCACCTTTACACGTGGGAAAGCCCACTGG
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   313755 120 -   1025902 ACGT-GGATACCAAGCTGTCATGTCAACAGATTAAGCTGCGTCAGATGACCGGAGACACTCGCTGTCTAGAATCCTGCTAGCCGTTGACTCCTGTCACCTTGACATGCCGTAAAGCC--CTGG
i cerAty1.NW_012001098v1   C 0 I 3915
s chlSab2.chrUn_KE147541v1 247605 120 -    811265 ACGT-GGATACCAAGCTGTCATGTCAACAGGTTAGGCTGCGTCAGATGACAGGAGAGACTCGCTGTCTAGAATCCTGCTAGCCGTTGACTCCTGTCACGTTGACATGCCGTAAAGCC--CTGG
i chlSab2.chrUn_KE147541v1 C 0 I 7464
s manLeu1.NW_012108508v1   305398 120 -    350446 ACGT-GGACACCAAGCTGTCATGGCAACAGATTAAGCTGCGTCAGATGACCGGAGAGACTCGCTGTCTAGAATCCTGCTAGCCGTTGACTCCTATCACCTTGACATGCCGTAAAGCC--CTGG
i manLeu1.NW_012108508v1   I 12831 I 17714
s colAng1.NW_012115411v1   436286 120 +   1230721 ACGT-GGACACCAAGCTGTCACATCAACAGATTAGGCTGCATCAGACGACCAGAGAGACTGCCTGTCTAGAATCCTCCTAGCCATTGACTCCTGTCACCTTGACATGCCGTAAAGCC--CTGG
i colAng1.NW_012115411v1   C 0 I 1
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=21423.000000
s hg38.chrX_KI270880v1_alt 272496 27 +    284869 TCGTCTGCGTTTCTGTCCAGCTCCTGG
s panTro5.chrX             458100 27 + 155549662 TCATCTGTGTTTCTGTCCAGCTCCTGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493006 26 + 155392059 TCATCTGCG-TTCTGTCCAGCTCCTGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352320 27 +    417917 TCATCTGCGATTCTGTCCAGCTCCTGG
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   436407 27 +   1230721 TCATCCGTGTTTCTGTCCAGCTCCTGG
i colAng1.NW_012115411v1   I 1 I 4743
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   305518 17714 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247725 7464 -    811265 I
e cerAty1.NW_012001098v1   313875 3915 -   1025902 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=1146.000000
s hg38.chrX_KI270880v1_alt 272523 2 +    284869 AC
s panTro5.chrX             458127 2 + 155549662 AC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493032 2 + 155392059 AC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352347 2 +    417917 AC
i gorGor5.CYUI01015925v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   305518 17714 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247725 7464 -    811265 I
e cerAty1.NW_012001098v1   313875 3915 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=3490.000000
s hg38.chrX_KI270880v1_alt 272525 3 +    284869 ttt
s panTro5.chrX             458129 3 + 155549662 ttt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493034 3 + 155392059 ttt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352349 3 +    417917 ttt
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     3285 2 +     47233 -tt
i macFas5.chrUn_KE146044   N 0 I 1
s cerAty1.NW_012001098v1   317790 3 -   1025902 ttt
i cerAty1.NW_012001098v1   I 3915 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   305518 17714 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247725 7464 -    811265 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e rheMac8.chrX             156018 8672 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=16940.000000
s hg38.chrX_KI270880v1_alt 272528 12 +    284869 tttttttttttt
s panTro5.chrX             458132 12 + 155549662 tttttttttttt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493037 12 + 155392059 tttatttttttt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352352 12 +    417917 tttttttttttt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             164690 12 + 149150640 ttttttattttt
i rheMac8.chrX             I 8672 C 0
s macFas5.chrUn_KE146044     3288 12 +     47233 ttttttattttt
i macFas5.chrUn_KE146044   I 1 C 0
s cerAty1.NW_012001098v1   317793 12 -   1025902 tattttttattt
i cerAty1.NW_012001098v1   C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   305518 17714 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e chlSab2.chrUn_KE147541v1 247725 7464 -    811265 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=520888.000000
s hg38.chrX_KI270880v1_alt 272540 259 +    284869 t-----ttttgagacggactctcactctgtcgcccaggccgg-agtgcagtggcacgatc-tcggctcaccacaacctctgcctcccggg-ttcaagcgattctcctgcctcagcctccctagtaggtgggattacaggtgcccgccaccacgcctggctaatttttgtatttttactagaaacgggg-tttcaccctgttggccaggttggtcttgaactcctgacctcg--tgatccgcctgcctcagtctcccaaagggctgggatt
s panTro5.chrX             458144 254 + 155549662 t---------gagacagactctcactctgtcgcc-aggctgg-agtgcagtggcacgatc-tcggctcaccacaacctctgcctccaggg-ttcaagcgattctcctgcctcagcctccctagtaggtgggactacaggcgcccgccaccacgcctggctaatttttgtatttttactagaaacgggg-tttcaccgtgttggccaggttggtcttgaactcctgacctcg--tgatccgcctgcctcagtctcccaaagagctgggatt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493049 254 + 155392059 t---------gagacagactctcactctgtcgcc-aggccgg-agtgcagtggcacgatc-tcggctcaccacaacctctgcctccaggg-ttcaagcgattctcctgcctcagcctcccgagtaggtgggactacaggcgcccgccaccacgcctggctaatttttgtatttttactagaaacgggg-tttcaccgtgttggccaggttggtcttgaactcctgacctcg--tgatccgcctgcctcagtctcccaaagggctgggatt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352364 267 +    417917 ttttttttttgagacggactttcactctgtcacccaggctggaagtgtggtggtgtgatcttcggctcaccacaacctctgcctcccgggtttcaagcgattctcctgcctcagcctcccgagtaggtgggactacaggca-ccaccaccatgcctggctaatttttgtatttttactagaaacggggttttcaccatgttggccaggttggtcttgaactcctgacctcg--tgatccgcctgcctcagtctcccaaagggctgggatt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             164702 259 + 149150640 -----tttttgagacagagtctcgctctgccgcccaggctgg-agtgcagtggccggatc-tcggctcattacaagctccgcctcccaag-ttcacgccattctcctgcctcagcctcccgagtagctgggaccccaggcacctgccacctcgcccggctagtttttgcatttttagtagagacgggg-tttcaccatgttggccaggctggtcttgaacccctgacctca--tgatccacctgcctcggcctcccacagtgctgggatg
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3300 259 +     47233 -----tttttgagacagagtttggctctgtcgcccaggctga-agtgcagtggccggatc-tcggctcattacaagctccgcctcccaag-ttcacgccattctcctgcctcagcctcccgagtagctgggaccccaggcacctgccacctcgcccggctagtttttgcatttttagtagagacgggg-tttcaccatgtcggccaggctggtcttgaacccctgacctca--tgatccacctgcctcggcctcccacagtgctgggatg
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   317805 255 -   1025902 -----tttttgagacagagtcttgctctgtcacccaggctgg-agtgcaatggcgcgatc-tcggctcgttacaacctctgcctcccaag-ttcacgccattctcctgcctcagcctcctgagtagctgggaccccaggcacctgccaccacgccctgctaagttttgtatttttattagagacgg-----ccaccgtgttgaccaggctggtctcgatctcctgaccttg--tgatccacctgcctcggcctcccaaggtgctgggatg
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 255189 261 -    811265 -----tttttgagacggagtctcactctgtcgcccaggctgg-agtgcagtggccggatc-tcagctcactgcaacctgcacctcccagg-ttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccacctcgcctggataatttttgtattttcagtagagatgggg-tttcaccacgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggatg
i chlSab2.chrUn_KE147541v1 I 7464 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   305518 17714 -    350446 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=21720.000000
s hg38.chrX_KI270880v1_alt 272799 8 +    284869 acaggcgt
s panTro5.chrX             458398 8 + 155549662 ataggcgt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493303 8 + 155392059 acaggcgt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352631 8 +    417917 acaggcgt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             164961 8 + 149150640 acaggtgc
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3559 8 +     47233 acaggtgc
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318060 8 -   1025902 acaggtgc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 255450 8 -    811265 acaggtgc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323232 8 -    350446 ACAGGTGC
i manLeu1.NW_012108508v1   I 17714 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         270012 2171 +    465904 I
e otoGar3.GL873584         346390 3222 +  11138919 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=59986.000000
s hg38.chrX_KI270880v1_alt 272807 18 +    284869 gagccaccgcgcccggcc
s panTro5.chrX             458406 18 + 155549662 gagccaccgcgtccggcc
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493311 18 + 155392059 gagccaccgcgcccggcc
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352639 18 +    417917 gagccgccgtgcccggcc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             164969 18 + 149150640 gagccaccgcgcccggcc
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3567 18 +     47233 gagccaccgcgcccggcc
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318068 18 -   1025902 cagccaccgcgcccggcc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 255458 18 -    811265 gagccaccgcgcccggcc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323240 18 -    350446 GAGCCACCGCGCCCGGCC
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         349612 18 +  11138919 GAGCAATCCCATTCTCTT
i otoGar3.GL873584         I 3222 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         270012 2171 +    465904 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=228851.000000
s hg38.chrX_KI270880v1_alt 272825 73 +    284869 TCACCTCCTTGACCGTTTACAGG-TG--ACAACTGTTTGAATCGGTCACCAAA-GCGTC--AAGATTAC--GGATCCTCAA
s panTro5.chrX             458424 73 + 155549662 TCACCTCCTTGACCGTTTACAGG-TG--ACAACTGTTTGAATCGGTCACCAAA-GTGTC--AAGATTAC--AGATCCTCAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493329 73 + 155392059 TCTCCTCCTTGACCATTTACAGG-TG--ACAACTGTTTGAATCGGTCACCAAA-GTGTC--AAGATTAC--AGATCCTCAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352657 76 +    417917 TCACCTCCTTGACCGTTTACAGGTTG--ACAACTCTTTGAATCAGTCACCAAA-GCGTTCAAGGATTAC--AGATCCTCAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             164987 75 + 149150640 TCACCTCCTTGACGGTTTACAGG-TA--AAAACTGTCTGAATCCGTCAGCAAA-GGGTC--AAGATCACACAGAGCCTCAA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3585 75 +     47233 TCACCTCCTTGACGGTTTACAGG-TA--AAAACTGTCTGAATCCGTCAGCAAA-GGGTC--AAGATCACACAGAGCCTCAA
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318086 75 -   1025902 TCACCTCCTTGACGGTTTACAGG-TA--AAAACTGTCTGAATCCGTCAGCAAA-GGGTC--AAGATCACAGAGAGCCTCGA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 255476 75 -    811265 TCACCTCCTTGACCGTTTACAGG-TA--AAAACTGTCTGAATCCGTCAGCAAA-GGGTC--AAGATCACAGAGAGCCTCAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323258 75 -    350446 TCACCTCCTTGTCGGTTTACAGG-TA--AAAACTGTCTGAATCCGTCAGCAAA-GGGTC--AAGATCACACAGAGCCTCAA
i manLeu1.NW_012108508v1   C 0 C 0
s saiBol1.JH378345         272183 73 +    465904 TCGCCTCCTTGATGGTTTACAGG-TC--ACGACCGGTTCAAGGAGCCACCAGA-GGGCT--GAGGTTTC--AGACCCTaaa
i saiBol1.JH378345         I 2171 I 2864
s otoGar3.GL873584         349630 76 +  11138919 CTGCCCCCTTAGAGGATGACAGG-GGATAAAACAGAATGGATCGGCCACCAAAGGGGTC--ACAACTGC--AGATCCTGAA
i otoGar3.GL873584         C 0 I 4
e canFam3.chrX             383565 4459 + 123869142 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=47161.000000
s hg38.chrX_KI270880v1_alt 272898 21 +    284869 GCCGTAGA-CATTTCACGTACA-----
s panTro5.chrX             458497 21 + 155549662 GCCATAGA-CATTTCATGTACA-----
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493402 21 + 155392059 GCCATAGA-CATTTCACGTACA-----
i panPan2.chrX             C 0 I 47
s gorGor5.CYUI01015925v1   352733 22 +    417917 GCCGTAGACCATTTCACGTACA-----
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165062 21 + 149150640 GCCATAGA-CCTTCTACGTGCA-----
i rheMac8.chrX             C 0 I 1
s macFas5.chrUn_KE146044     3660 21 +     47233 GCCATAGA-CCTTCTACGTGCA-----
i macFas5.chrUn_KE146044   C 0 I 1
s cerAty1.NW_012001098v1   318161 21 -   1025902 GCCATAGA-CCTTCTACGTGCA-----
i cerAty1.NW_012001098v1   C 0 I 1
s chlSab2.chrUn_KE147541v1 255551 21 -    811265 GCCATAGA-CCTTCTACCTGCA-----
i chlSab2.chrUn_KE147541v1 C 0 I 1
s manLeu1.NW_012108508v1   323333 21 -    350446 GCCATAGA-CCTTCTACGTGCA-----
i manLeu1.NW_012108508v1   C 0 I 1
s otoGar3.GL873584         349710 21 +  11138919 GTTTAAGA-C-----ACCTGCAAAATG
i otoGar3.GL873584         I 4 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=451138.000000
s hg38.chrX_KI270880v1_alt 272919 231 +    284869 ATCAAA-ATCAACTGAAAAGGCAG-GCGACGTTTCCT-GGAGGAACTTTGCTGAAAGAAAAGTCATGAGCCATAACA-AACCCTGGAACCGGCTTCT-----TAACCCCCACCGCAAACTCCC-AAGCTTCGGCGTGTGTTGAAAAAC---CAGAAAGACAGCCTTCTCTAAATAG--GATCCACATCTTCATCTTTCTCTCAGGACCCCAAAGACACCTCC--TGGCTGTTTCTTGCTGGAGAGAAA
s panTro5.chrX             458518 230 + 155549662 ATCAAA-ATCAACTAAAAAGGCAG-GAGGTGTTTCCT-GGAGGAACTTTGCTGAAAGAAA-TTCATGAGCCATAACA-AACCCTGGAACCGGCTTCT-----TAACCCCCACCGCAAACTCCC-AAGCTTCGGTGTGTGTTGAAAAAC---CAGAAAGACAGCCTTCTGTAAATAG--GATCCACATCTTCATCTTTCTTGCAGGACCCGAAAGACACCTCC--TGGCTGTTTCTTGCTGGAGAGAAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352755 232 +    417917 ATCAAAGATCAACTAAAAAGGCCA-GGCGTGTTTCCTGGGAGGAACTTTGCTGAAAGAAAAATCATGAGCCATAACA-AATCCTGGAGCTGGCTTCT-----TAACCCCCACTGCAAACTCCC-AAGCTTCGGTGTGTGTTGAAAAAC---CAGAAAGATAGCCTTCTGTAAATAG--GATCCACATCTTCATCTTTCTTTCAGGACCCGAAAGACACCTCC--TGGCTGTTTCTTGCTGGAGAAAA-
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165084 223 + 149150640 ATCAAA-ATCAACTCCGAAGGCTGAGCCGTGTTTCCC-GGAGGAACTTTGCTGAAAGGAAAATCACGAACCATAACA-AACCCTG-----------------CACCCCCCACTGCAAACTCCCAAAGCTTCCACGTGTGTTGAAAAACCAGAAAAAAAATCGCCTTCT-CGAATAG--TATCCACATCTTCATCTTTCTTTTAGGACCCAAAAGAGGCCTCG--TGGCTGTTTCTTGCTGGAGAGAAA
i rheMac8.chrX             I 1 C 0
s macFas5.chrUn_KE146044     3682 222 +     47233 ATCAAA-ACCAACTCCGAAGGCTGAGCCGTGTTTCCC-GGAGGAACTTTGCTAAAAGGAAAATCACGAACCATAACA-AACCCCG-----------------CACCCCCCACTGCAAACTCCCAAAGCTTCCACGTGTGTTGAAAAACCAG-AAAAAAATCGCCTTCT-CGAATAG--TATCCACATCTTCATCTTTCTTTTAGGACCCAAAAGAGGCCTCC--TGGCTGTTTCTTGCTGGAGAGAAA
i macFas5.chrUn_KE146044   I 1 C 0
s cerAty1.NW_012001098v1   318183 233 -   1025902 ATCAAA-ATCAACTCCGAAGGCTGAGCCATGTTTCCC-GGAGGAACTTTGCTGAAAGGAAAATCACGAACCATCACA-AACCCTGCAACCTGCTTCT----TCACCCCCCACTGCAAACTCTC-AAGCTTCCACGTGTGTTGAAAAAT--GCAGAAAAATTGCCTTCT-CGAATAG--TATCCACATCTTCATCTTTGTTTTAGGACTCAAAAGAGGCCTCC--TGGCTGTTTCTTGCTGGAGAGAAA
i cerAty1.NW_012001098v1   I 1 C 0
s chlSab2.chrUn_KE147541v1 255573 228 -    811265 ATCAAA-ATCAACTCCGAAGGCTGAGCGGTGTTTCCT-GGAGGAGCTTTGCTGAAAGAAA-------AACCATCACA-AACCCTGGAACCCGCTTCT----TCACCCCCCACTGCAAACTCCC-AAGCTTCCACGTGTGTCCAAAAAC--CAGAAAAAATCGCCTTCT-CGAATCG--TATCCACATCTTCATCTTTCTTTTAGGACCCGAAAGAGGCCTCCTGTGGCTGTTTCTGGCTGGAGAGAAA
i chlSab2.chrUn_KE147541v1 I 1 C 0
s manLeu1.NW_012108508v1   323355 234 -    350446 ATCAAA-ATCAACTCCGAAGGCTGAGCCGTGTTTCCC-GGAGGAACTTTGCTGAAAGGAAAATCAC-AACCATCACA-AACCCTGCAACCCGCTTCT----TCACCCCCCACTGCAAACTCTC-AAGCTTCCATGTGTGTTGAAAAAT--GCAGAAAAATTGCCTTCT-CGAATAGTATATCCACATCTTCATCTTCCTTTTAGGACCCAAAAGAGGCCTCC--TGGCTGTTTCTTGCTGGAGAGAAA
i manLeu1.NW_012108508v1   I 1 C 0
s otoGar3.GL873584         349731 234 +  11138919 CTCAAA-ATAAACTTTAGTGTCTG-GCAGCTCTTCAC-GGAGGA-CCTCGCTACAATAAAATTCACAAGCAACAACAGAATCTCGCAAGGCACCAAGGAGATTGCATCCTGGAGCATACTCTC-CAGTCCCAGCAGGCGTTGAAAGGT----AGAAAAATAACTCCTTGTCAATAT--TGCCCGCAT-TCCATCTTTCTTCCAGGACTCAGAAGACCCTGGA--TGGTCATTTCTTGCTGGAGAGTCA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I
e panPan2.chrX             493423  47 + 155392059 I

a score=28887.000000
s hg38.chrX_KI270880v1_alt 273150 9 +    284869 GCATTTCAC
s panTro5.chrX             458748 9 + 155549662 GCATTTCAC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493470 9 + 155392059 GCATTTCAC
i panPan2.chrX             I 47 C 0
s gorGor5.CYUI01015925v1   352987 9 +    417917 GCATTTCAC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165307 9 + 149150640 GCGTTTCAC
i rheMac8.chrX             C 0 I 26
s macFas5.chrUn_KE146044     3904 9 +     47233 GCGTTTCAC
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318416 9 -   1025902 GCGTTTCAC
i cerAty1.NW_012001098v1   C 0 I 103
s chlSab2.chrUn_KE147541v1 255801 9 -    811265 GCGTTTCAC
i chlSab2.chrUn_KE147541v1 C 0 I 63
s manLeu1.NW_012108508v1   323589 9 -    350446 GCGTTTCAC
i manLeu1.NW_012108508v1   C 0 I 105
s otoGar3.GL873584         349965 9 +  11138919 TCGGTTCCT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=29926.000000
s hg38.chrX_KI270880v1_alt 273159 63 +    284869 GTGCAGTACACCCTGTTTGAAACATCGCTTGGGT-ATTTTGATACATTGTTTTGTTGTAGTCAG
s panTro5.chrX             458757 63 + 155549662 GTGCAGTACACCCTGTTTGAAACATTGCTCGGGT-ATTTTGATACATTGTTTTGTTGTAGTCAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493479 63 + 155392059 GTGCAGTACACCCTGTTTGAAACATTGCTCGGGT-ATTTTGATACATTGTTTTGTTGTAGTCAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   352996 64 +    417917 GTGCAGTACACCCTGTTTGAAACATTGCTCGGGTAATTTTGATACATTGTTTTGTTGTAGTCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     3913 25 +     47233 ATTCGGTACCTCCTGTTCACAACAT---------------------------------------
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         349974 52 +  11138919 GTACAGCGACGTCTGTTCAAAACAGTATTTGGGC------AGCACATGCCATTGTCAC------
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 255810 63 -    811265 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e rheMac8.chrX             165316 26 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=-10335.000000
s hg38.chrX_KI270880v1_alt 273222 7 +    284869 ---AAAC---A-GC
s panTro5.chrX             458820 7 + 155549662 ---AAAC---A-GC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493542 7 + 155392059 ---AAAC---A-GC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353060 8 +    417917 ---AAAC---AGGC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     3938 1 +     47233 ------T-------
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 255873 7 -    811265 ---AAACAGA----
i chlSab2.chrUn_KE147541v1 I 63 C 0
s otoGar3.GL873584         350026 7 +  11138919 GAAAAGC-------
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e rheMac8.chrX             165316 26 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=11634.000000
s hg38.chrX_KI270880v1_alt 273229 6 +    284869 GCATCA
s panTro5.chrX             458827 6 + 155549662 ACATCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493549 6 + 155392059 ACATCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353068 6 +    417917 GCATCA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165342 6 + 149150640 GCATCA
i rheMac8.chrX             I 26 C 0
s macFas5.chrUn_KE146044     3939 6 +     47233 GCATCA
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 255880 6 -    811265 GCATCA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         350033 6 +  11138919 TGATCA
i otoGar3.GL873584         C 0 I 4
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=43638.000000
s hg38.chrX_KI270880v1_alt 273235 23 +    284869 GAAAACACAGTTGTACAAATACT
s panTro5.chrX             458833 23 + 155549662 GAAAACACGGTTTTACAAATACT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493555 23 + 155392059 GAAAACACGGTTTTACAAATACT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353074 23 +    417917 GAAAACACAGTTGTACAAATACT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165348 23 + 149150640 GAAAACACAGTTGTACAAACACT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3945 23 +     47233 GAAAACACAGTTGTACAAACACT
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 255886 23 -    811265 GAAAACACAGGTGTACAAATACT
i chlSab2.chrUn_KE147541v1 C 0 I 974
s otoGar3.GL873584         350043 23 +  11138919 GAAAACACCGATCTCCACAGATG
i otoGar3.GL873584         I 4 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=16564.000000
s hg38.chrX_KI270880v1_alt 273258 25 +    284869 -CTTTTTAATGGTACTCGGTGGGGGC
s panTro5.chrX             458856 25 + 155549662 -GTTTTTAATGGTACTCGGTGGGGGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493578 25 + 155392059 -GTTTTTAATGGTACTCGGTGGGGGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353097 25 +    417917 -GTTTTTAGTGCTACTTGGTGGGGGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165371 23 + 149150640 -ACTGTTAATTGCACGTGGGGGGG--
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3968 22 +     47233 -ACTGTTAATTGCACGT-GGGGGG--
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350066 23 +  11138919 ATGTTTTAATTACACTCGGGGGG---
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 255909 974 -    811265 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=1113.000000
s hg38.chrX_KI270880v1_alt 273283 1 +    284869 T
s panTro5.chrX             458881 1 + 155549662 T
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493603 1 + 155392059 T
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353122 1 +    417917 T
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165394 1 + 149150640 G
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3990 1 +     47233 T
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256883 1 -    811265 t
i chlSab2.chrUn_KE147541v1 I 974 C 0
s otoGar3.GL873584         350089 1 +  11138919 T
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323598 105 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=45225.000000
s hg38.chrX_KI270880v1_alt 273284 18 +    284869 GTGTGTGTGTTTTAAAAT
s panTro5.chrX             458882 18 + 155549662 GTGTGTGTGTTTTAAAAT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493604 18 + 155392059 GTGTGTGTGTTTTAAAAT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353123 18 +    417917 GTGTGTGTGTTTTAAAAT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165395 18 + 149150640 GGGTGTGTGTTTTAAAAC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     3991 18 +     47233 GTGTGTGTGTTTTAAAAC
i macFas5.chrUn_KE146044   C 0 I 142
s chlSab2.chrUn_KE147541v1 256884 18 -    811265 gtgtgtgtgtTTTAAAAT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323703 18 -    350446 GTGTGTGTGTTTTAAAAC
i manLeu1.NW_012108508v1   I 105 C 0
s otoGar3.GL873584         350090 17 +  11138919 GTGCGTTTGTTTGTAAT-
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=41852.000000
s hg38.chrX_KI270880v1_alt 273302 18 +    284869 AACAAAACTGCTAAACTC
s panTro5.chrX             458900 18 + 155549662 AACAAAACGGCTCAACTC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493622 18 + 155392059 AATAAAACGGCTCAACTC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353141 18 +    417917 AACAAAACTGCTCAACTC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165413 18 + 149150640 AACCCAACGGCTAAACTC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4151 18 +     47233 AACAAAAGTGCTAAACTC
i macFas5.chrUn_KE146044   I 142 C 0
s chlSab2.chrUn_KE147541v1 256902 18 -    811265 AACAAAACGGCTAAACTC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323721 18 -    350446 AACCAAACGGCTAAACTC
i manLeu1.NW_012108508v1   C 0 I 110
s otoGar3.GL873584         350107 18 +  11138919 AACAAAAGTGACAAACTC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=43913.000000
s hg38.chrX_KI270880v1_alt 273320 20 +    284869 CATGGGAATTACTCAAAATG
s panTro5.chrX             458918 20 + 155549662 CATGGGAATTAGTGAAAATG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493640 20 + 155392059 CATGGGAATTAGTCAAAATG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353159 20 +    417917 CATGGGAATTAGTCAAAATG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165431 20 + 149150640 TATAGGAATTAGTCGAAATG
i rheMac8.chrX             C 0 I 88
s macFas5.chrUn_KE146044     4169 20 +     47233 CATAGGAATTAGTCGAAATG
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256920 20 -    811265 CATAGGAATTAGTCGAAATG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         350125 20 +  11138919 CACGGGAATTAGTCGAAATG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=29153.000000
s hg38.chrX_KI270880v1_alt 273340 25 +    284869 AATATC--AGGGAAAGGTTTCCTTCGT
s panTro5.chrX             458938 24 + 155549662 AATATC--GGGGAAGGG-TTCCTTCGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493660 25 + 155392059 AATATC--GGGGAAGGGTTTCCTTCGA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353179 25 +    417917 AATATC--GGGGAAAGGTTTCCTTCGT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4189 25 +     47233 AATATC--GGGAAAGGGGTTCCTTCAA
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256940 25 -    811265 AATAAC--GGGAAAGGGGTTCCTTCAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         350145 27 +  11138919 AATTTCTGGGGGAAGAATTTCATTCCA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   436434 4743 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=79896.000000
s hg38.chrX_KI270880v1_alt 273365 54 +    284869 TACTTAAACAGATGCC--TTTGCAACCTACTAT----TTTATTTTATTATGTCATTTCTA
s panTro5.chrX             458962 49 + 155549662 TACTTAAATAGGTGCC--TTTGCAACCTAC---------TATTTTATTATGTCATTTCTA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493685 49 + 155392059 TACTTAAATAGGTGCC--TTTGCAACCTAC---------TATTTTATTATGTCATTTCTA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353204 49 +    417917 TACTTAAATAGATGCC--TTTGCAACCTAC---------TATTTTATTATGTCATTTCTA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4214 60 +     47233 TACTTAAATAGATGTGTTTTTGCCGCCTGGTATTTTATTTATTTTATTGTGTCATTTCTA
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256965 54 -    811265 TACTTAAATAGACGCG--TTTGCAACCTACTGT----TTTATTTTATTATGTCATTTCTA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   441177 54 +   1230721 TACTTAAACAGACGCG--TTTGCAGCCTCCTGT----TTTATTTTATTATGTCATTTCTA
i colAng1.NW_012115411v1   I 4743 I 454
s otoGar3.GL873584         350172 53 +  11138919 CACTTGAAATGACATA--TTTA-GACTCATTGT----TTTATTTTATTAGATCATTTCTA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=6141.000000
s hg38.chrX_KI270880v1_alt 273419 4 +    284869 TGGG
s panTro5.chrX             459011 4 + 155549662 TGGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493734 4 + 155392059 TGGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353253 4 +    417917 TGGG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4274 4 +     47233 TGGA
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 257019 4 -    811265 AGGG
i chlSab2.chrUn_KE147541v1 C 0 I 24
s otoGar3.GL873584         350225 4 +  11138919 TGGG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=21930.000000
s hg38.chrX_KI270880v1_alt 273423 29 +    284869 AAGAGATTATTTAAAAGAAGAAAAGGGGC
s panTro5.chrX             459015 28 + 155549662 AAGAGATTATTTAAAAGAAGAAAAGGGG-
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493738 28 + 155392059 AAGAGATTATTTAAAAGAAGAAAAGGGG-
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353257 28 +    417917 AAGAGATTATTTAAAAGAAGAAAAGGGC-
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4278 28 +     47233 AGGAGATTATTTAAAAGAAGAAAAAGAC-
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350229 20 +  11138919 GGAAGTTCATCAAAAAGGAG---------
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257023 24 -    811265 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=46611.000000
s hg38.chrX_KI270880v1_alt 273452 38 +    284869 CCCAGGTTT------------TCTCTCCTAAATTTCTAG-CCCCAAACCTT
s panTro5.chrX             459043 38 + 155549662 CCCAGGTTT------------TTTCTCCTAAATTTCTAG-CCCCAAACCTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493766 38 + 155392059 CCCAGGTTT------------TTTCTCCTAAATTTCTAG-CCCCAAACCTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353285 37 +    417917 CCCAGGTTT------------TCTCTCCTAAATTTCTAG--CCCAAACCTT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4306 50 +     47233 CTCACGTTTTTTTTTTTTTTCTTTCTCCTAAATTTCTGG-CCCCAGACCTT
i macFas5.chrUn_KE146044   C 0 I 1
s chlSab2.chrUn_KE147541v1 257047 37 -    811265 CCCACGTTT------------TTCACACTAAATTTCTAG-CCCCA-ACCTT
i chlSab2.chrUn_KE147541v1 I 24 T 1081
s otoGar3.GL873584         350249 43 +  11138919 CTCATTTTTTTTT--------TTCCTCCTAAATTTCTATCCCCCAAACCTT
i otoGar3.GL873584         C 0 T 266
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=10955.000000
s hg38.chrX_KI270880v1_alt 273490 9 +    284869 CGTGATATT
s panTro5.chrX             459081 9 + 155549662 CGTGATATT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493804 9 + 155392059 CGTGATATT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353322 9 +    417917 CCTGATATT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4357 9 +     47233 CGTGATACT
i macFas5.chrUn_KE146044   I 1 C 0
s chlSab2.chrUn_KE147541v1 256003 9 -    811265 CGTGATATT
i chlSab2.chrUn_KE147541v1 T 1081 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e otoGar3.GL873584         350292 266 +  11138919 T
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=17594.000000
s hg38.chrX_KI270880v1_alt 273499 18 +    284869 GAAAAGCAAG-TATATCAC
s panTro5.chrX             459090 18 + 155549662 GAAAAGCAAG-TATATCAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493813 18 + 155392059 GAAAAGCAAG-TATATCAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353331 18 +    417917 GAAAAGCAAG-TATATCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4366 17 +     47233 G-AGAGCAAG-TACCTCAG
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256012 19 -    811265 GAAAAGCAAGTTATTTCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         350026 18 +  11138919 GAAAAGCTGA-TCAACCTG
i otoGar3.GL873584         T 266 C 0
e canFam3.chrX             383565 4459 + 123869142 I
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=51128.000000
s hg38.chrX_KI270880v1_alt 273517 37 +    284869 AAAAGACTGT-CTTCTACAAATTATATTTTTAATTGCA
s panTro5.chrX             459108 37 + 155549662 AAAAGACTGT-CTTCTACAAATTATGTTTTTAATTGCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493831 37 + 155392059 AAAAGACTGT-CTTCTACAAATTATGTTTTTAATTGCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353349 36 +    417917 -AAAGACTGT-CTTCTACAAATTATGTTTTTAATTGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4383 38 +     47233 AAAAGACTGTCTTTCTAGAAATGATGTTTTTAATGGCT
i macFas5.chrUn_KE146044   C 0 I 2
s chlSab2.chrUn_KE147541v1 256031 37 -    811265 AAAAGGTTGT-GTTCTACAAAGTATGTTTTCAATCGCA
i chlSab2.chrUn_KE147541v1 C 0 I 7
s otoGar3.GL873584         350044 36 +  11138919 AAAACACCGA-TCTCCACAGATGATGTTTT-AATTACA
i otoGar3.GL873584         C 0 I 8
s canFam3.chrX             388024 36 + 123869142 AAGACACTTT-GTTCTACAAACAACACTTC-CATCACG
i canFam3.chrX             I 4459 C 0
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318425 103 -   1025902 I
e colAng1.NW_012115411v1   441231 454 +   1230721 I
e rheMac8.chrX             165451 88 + 149150640 I
e macNem1.NW_012017243v1   447204 8939 +  25972781 I

a score=3704.000000
s hg38.chrX_KI270880v1_alt 273554  6 +    284869 G------------------TGTGC
s panTro5.chrX             459145  6 + 155549662 C------------------TGTGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493868  6 + 155392059 C------------------TGTGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353385 24 +    417917 Ctgtgtgtgtgtgtgtgtgtgtgt
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4423  6 +     47233 ------------------GTGTGT
i macFas5.chrUn_KE146044   I 2 C 0
s macNem1.NW_012017243v1   456143  6 +  25972781 ------------------gtgtgt
i macNem1.NW_012017243v1   I 8939 C 0
s cerAty1.NW_012001098v1   318528  6 -   1025902 ------------------GTGTGT
i cerAty1.NW_012001098v1   I 103 C 0
s chlSab2.chrUn_KE147541v1 256075  6 -    811265 ------------------GTGTGT
i chlSab2.chrUn_KE147541v1 I 7 C 0
s colAng1.NW_012115411v1   441685  6 +   1230721 ------------------gtgtgt
i colAng1.NW_012115411v1   I 454 C 0
s otoGar3.GL873584         350088  6 +  11138919 ------------------GTGTGC
i otoGar3.GL873584         I 8 C 0
s canFam3.chrX             388060  6 + 123869142 ------------------CTGGCC
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   323739 110 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e rheMac8.chrX             165451 88 + 149150640 I

a score=256931.000000
s hg38.chrX_KI270880v1_alt 273560 54 +    284869 GTGTGT-GTTTTAAAATAACAAAACTGCTAAACTCCATGGGAATTAGTCAAAATG
s panTro5.chrX             459151 54 + 155549662 GTGTCT-GTTTTAAAATAACAAAACTGCTAAACTCCATGGGAATTAGTCAAAATG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493874 54 + 155392059 GTGTCT-GTTTTAAAATAACAAAACTGCTAAACTCCATGGGAATTAGTCAAAATG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353409 54 +    417917 gtgtgt-gtTTTAAAATAACAAAACTGCTCAACTCCATGGGAATTAGTCAAAATG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165539 54 + 149150640 GTGTGT-GTTTTAAACGAACAAAAGTGCTAAACTCCATAGGAATTAGTCGAAATG
i rheMac8.chrX             I 88 C 0
s macFas5.chrUn_KE146044     4429 54 +     47233 GCGTGT-GTCTTCAAATAACAAAAATTGTAAGCTCCATGGGAGTTACTCAAAATG
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456149 54 +  25972781 gtgggt-gtTTTAAAATAACAAAAGTGCTAAACTGCACGGAAATTACTCAAAATG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   318534 54 -   1025902 GCGTGT-GTTTTAAAACAACCAAACGGCTAAACTCTGTAGGAATGAGTCGAAATG
i cerAty1.NW_012001098v1   C 0 I 99
s chlSab2.chrUn_KE147541v1 256081 54 -    811265 GTGTGT-GTCTTAAAATAACAAAAGTACTAAACTCCATGGGAATTAGTCGAAATG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323849 54 -    350446 GTGTGT-GTTTTAAACTAACAAAAGTGCTAAACTCCGTAGGAATTAGTCGAAATG
i manLeu1.NW_012108508v1   I 110 C 0
s colAng1.NW_012115411v1   441691 54 +   1230721 gtgtgt-gtTTTAAAATAACAAAAGTGCTAAACTCCATGGGAATGACTCAGAACG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350094 51 +  11138919 --GTTT-GT-TTGTAATAACAAAAGTGACAAACTCCACGGGAATTAGTCGAAATG
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388066 53 + 123869142 GCGTTTCGTTTTCA--TAACCAGACGGATTGGCTCCGTGGGAATTAGGAAAAATG
i canFam3.chrX             C 0 C 0
e saiBol1.JH378345         272256 2864 +    465904 I

a score=54373.000000
s hg38.chrX_KI270880v1_alt 273614 16 +    284869 AATATC--GGGGAAGGGT
s panTro5.chrX             459205 16 + 155549662 AATATC--GGGGAAGGGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493928 16 + 155392059 AATATC--GGGGAAGGGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353463 16 +    417917 AATATC--GGGGAAGGGT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165593 16 + 149150640 AATATC--GGGAAAGGGG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4483 16 +     47233 AATAAC--AGGGGAAGGT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456203 16 +  25972781 AATATC--GCAGAAGGGT
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256135 16 -    811265 AATATC--GGGAAAGGGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323903 16 -    350446 AATATC--GGGAAAGGGG
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441745 16 +   1230721 AATAGT--GGGAAAGGGT
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350145 18 +  11138919 AATTTCTGGGGGAAGAAT
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388119 16 + 123869142 AACTCG--GAGGGCAGGT
i canFam3.chrX             C 0 I 557
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=26101.000000
s hg38.chrX_KI270880v1_alt 273630 9 +    284869 TTCCTTCGA
s panTro5.chrX             459221 9 + 155549662 TTCCTTCGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493944 9 + 155392059 TTCCTTCGA
i panPan2.chrX             C 0 T 268
s gorGor5.CYUI01015925v1   353479 9 +    417917 TTCCTTCGT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165609 9 + 149150640 TTCCTTCGA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4499 6 +     47233 TTCCTT---
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456219 9 +  25972781 TTCCTTTGA
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256151 9 -    811265 TTCCTTCAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323919 9 -    350446 TTCCTTCAA
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441761 9 +   1230721 TTCCATGGA
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350163 9 +  11138919 TTCATTCCA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=22002.000000
s hg38.chrX_KI270880v1_alt 273639 5 +    284869 TACTT
s panTro5.chrX             459230 5 + 155549662 TACTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493685 5 + 155392059 TACTT
i panPan2.chrX             T 268 C 0
s gorGor5.CYUI01015925v1   353488 5 +    417917 TACTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165618 5 + 149150640 TACTT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4505 3 +     47233 --CTT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456228 5 +  25972781 TACTT
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256160 5 -    811265 TACTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323928 5 -    350446 TACTT
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441770 5 +   1230721 TACTT
i colAng1.NW_012115411v1   C 0 I 50
s otoGar3.GL873584         350172 5 +  11138919 CACTT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=9741.000000
s hg38.chrX_KI270880v1_alt 273644 5 +    284869 -AAATA
s panTro5.chrX             459235 5 + 155549662 -AAACA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493690 5 + 155392059 -AAATA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353493 5 +    417917 -AAATA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165623 5 + 149150640 -AAATA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4508 5 +     47233 -AAATA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456233 5 +  25972781 -CCATA
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256165 5 -    811265 -AAAta
i chlSab2.chrUn_KE147541v1 C 0 I 805
s manLeu1.NW_012108508v1   323933 5 -    350446 -AGATA
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         350177 5 +  11138919 GAAAT-
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   441775 50 +   1230721 I

a score=4500.000000
s hg38.chrX_KI270880v1_alt 273649 1 +    284869 G
s panTro5.chrX             459240 1 + 155549662 G
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493695 1 + 155392059 G
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353498 1 +    417917 G
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165628 1 + 149150640 G
i rheMac8.chrX             C 0 I 26
s macFas5.chrUn_KE146044     4513 1 +     47233 G
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456238 1 +  25972781 G
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256975 1 -    811265 G
i chlSab2.chrUn_KE147541v1 I 805 C 0
s manLeu1.NW_012108508v1   323938 1 -    350446 G
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         350182 1 +  11138919 G
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   441775 50 +   1230721 I

a score=7479.000000
s hg38.chrX_KI270880v1_alt 273650 20 +    284869 GTACCTTTGCAACC-TACTAT
s panTro5.chrX             459241 20 + 155549662 ATGCCTTTGCAAAC-TACTAT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493696 20 + 155392059 GTGCCTTTGCAACC-TACTAT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353499 20 +    417917 ATGCCGTTGCAACC-TACTAT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4514 15 +     47233 ATGTGTCTGCAACC-T-----
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456239 15 +  25972781 -TTTGCTTCCTACTGT-----
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256976 16 -    811265 ACGCGTTTGCAACC-TA----
i chlSab2.chrUn_KE147541v1 C 0 I 4
s manLeu1.NW_012108508v1   323939 20 -    350446 ACACGTTTGCCACC-TGGTAT
i manLeu1.NW_012108508v1   C 0 I 5
s otoGar3.GL873584         350183 19 +  11138919 ACATATTTA-GACT-CATTGT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   441775 50 +   1230721 I
e rheMac8.chrX             165629 26 + 149150640 I

a score=11187.000000
s hg38.chrX_KI270880v1_alt 273670 3 +    284869 TTT
s panTro5.chrX             459261 3 + 155549662 TTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493716 3 + 155392059 TTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353519 3 +    417917 TTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165655 3 + 149150640 TTT
i rheMac8.chrX             I 26 C 0
s macFas5.chrUn_KE146044     4529 3 +     47233 CTT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456254 3 +  25972781 TTT
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256996 3 -    811265 TTT
i chlSab2.chrUn_KE147541v1 I 4 C 0
s manLeu1.NW_012108508v1   323964 3 -    350446 TTT
i manLeu1.NW_012108508v1   I 5 C 0
s otoGar3.GL873584         350202 3 +  11138919 TTT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   441775 50 +   1230721 I

a score=15015.000000
s hg38.chrX_KI270880v1_alt 273673 3 +    284869 ATT
s panTro5.chrX             459264 3 + 155549662 ATT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493719 3 + 155392059 ATT
i panPan2.chrX             C 0 I 41
s gorGor5.CYUI01015925v1   353522 3 +    417917 ATT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165658 3 + 149150640 ATT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4532 3 +     47233 ATT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456257 3 +  25972781 ATT
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256999 3 -    811265 ATT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323967 3 -    350446 ATT
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441825 3 +   1230721 ATT
i colAng1.NW_012115411v1   I 50 C 0
s otoGar3.GL873584         350205 3 +  11138919 ATT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=97853.000000
s hg38.chrX_KI270880v1_alt 273676 36 +    284869 TTATTATGTCATTTCT-ATGGG-AGGAGATTATTTAAA
s panTro5.chrX             459267 36 + 155549662 TTATTATGTCATTTCT-ATCGG-AGGAGATTATTTAAA
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353525 36 +    417917 TTATTATGTCATTTCT-ATGGG-AAGAGATTATTTAAA
i gorGor5.CYUI01015925v1   C 0 I 50
s rheMac8.chrX             165661 36 + 149150640 TTATTGTGTCATTTCT-ATGGA-AGGAGATTATTTAAA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4535 36 +     47233 GTATCATGTCATTTCC-ATGGC-AGGAGATTATTTAAA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456260 37 +  25972781 TTATTATGTCATTTCTAAGGGC-AGGACGTGATTTGAA
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 257002 37 -    811265 TTATTATGTCATTTCT-AAGGGCAGGACGTGATTTAAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   323970 36 -    350446 TTATTGTGTCATTTCT-ATGGA-AGCAGATTATTTAAA
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441828 36 +   1230721 TTATTGTGTCATTCCT-ATGGC-AGGACGTGATTTAAA
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350208 36 +  11138919 TTATTAGATCATTTCT-ATGGG-GGAAGTTCATCAAAA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e panPan2.chrX             493722 41 + 155392059 I

a score=12312.000000
s hg38.chrX_KI270880v1_alt 273712 5 +    284869 AGGAG
s panTro5.chrX             459303 5 + 155549662 AGGAG
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             165697 5 + 149150640 AGAAG
i rheMac8.chrX             C 0 I 5
s macFas5.chrUn_KE146044     4571 5 +     47233 AGAAG
i macFas5.chrUn_KE146044   C 0 I 3
s macNem1.NW_012017243v1   456297 5 +  25972781 AGGAG
i macNem1.NW_012017243v1   C 0 I 3
s chlSab2.chrUn_KE147541v1 257039 5 -    811265 AGGAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324006 5 -    350446 AGAAG
i manLeu1.NW_012108508v1   C 0 I 41
s colAng1.NW_012115411v1   441864 5 +   1230721 AGGAG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350244 2 +  11138919 ---AG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353561 50 +    417917 I
e panPan2.chrX             493722 41 + 155392059 I

a score=5376.000000
s hg38.chrX_KI270880v1_alt 273717 5 +    284869 GAGCT
s panTro5.chrX             459308 5 + 155549662 GAGCT
i panTro5.chrX             C 0 T 268
s panPan2.chrX             493763 5 + 155392059 GGGCC
i panPan2.chrX             I 41 C 0
s rheMac8.chrX             165707 5 + 149150640 GACCT
i rheMac8.chrX             I 5 C 0
s macFas5.chrUn_KE146044     4579 1 +     47233 ----C
i macFas5.chrUn_KE146044   I 3 C 0
s macNem1.NW_012017243v1   456305 2 +  25972781 ---CC
i macNem1.NW_012017243v1   I 3 C 0
s chlSab2.chrUn_KE147541v1 257044 5 -    811265 GAGCC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   441869 5 +   1230721 GGGCC
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350246 5 +  11138919 GAGCT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324011 41 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353561 50 +    417917 I

a score=55749.000000
s hg38.chrX_KI270880v1_alt 273722 29 +    284869 CACG--------TTTTTCGTACGAAATTTCTAGCCCC
s panTro5.chrX             459045 29 + 155549662 CAGG--------TTTTTTCTCCTAAATTTCTAGCCCC
i panTro5.chrX             T 268 C 0
s panPan2.chrX             493768 29 + 155392059 CAGG--------TTTTTTCTCCTAAATTTCTAGCCCC
i panPan2.chrX             C 0 C 0
s rheMac8.chrX             165712 37 + 149150640 CACGTTTGTTTTTTTTTTCTCCTAAATTTCTGGCCCC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4580 29 +     47233 CACT--------TGTTTTGTCCGAAATGTCTAGCCTC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456307 29 +  25972781 CACG--------TTTTTTGCACTAAATTTCTAGCCCC
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 257049 29 -    811265 CACG--------TTTTTCACACTAAATTTCTAGCCCC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   441874 30 +   1230721 CACG-------TTTTTTCGCACTAAATTTCTAGCCCC
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350251 33 +  11138919 ----CATTTTTTTTTTTCCTCCTAAATTTCTATCCCC
i otoGar3.GL873584         C 0 I 2
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324011 41 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353561 50 +    417917 I

a score=13394.000000
s hg38.chrX_KI270880v1_alt 273751 8 +    284869 A-ACCCTCC
s panTro5.chrX             459074 8 + 155549662 A-AACCTTC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493797 8 + 155392059 A-AACCTTC
i panPan2.chrX             C 0 C 0
s rheMac8.chrX             165749 9 + 149150640 AGACCTTTC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4609 7 +     47233 --ACCCTTC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456336 7 +  25972781 --AACCTTC
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 257078 7 -    811265 --AACCTTC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324052 8 -    350446 -AACCTTTC
i manLeu1.NW_012108508v1   I 41 C 0
s colAng1.NW_012115411v1   441904 7 +   1230721 --AACCTTC
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350286 8 +  11138919 -AACCTTTC
i otoGar3.GL873584         I 2 T 255
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353561 50 +    417917 I

a score=19770.000000
s hg38.chrX_KI270880v1_alt 273759 7 +    284869 ATGATAC
s panTro5.chrX             459082 7 + 155549662 GTGATAT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493805 7 + 155392059 GTGATAT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353611 7 +    417917 GTGATAT
i gorGor5.CYUI01015925v1   I 50 C 0
s rheMac8.chrX             165758 7 + 149150640 GTGATAC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4616 7 +     47233 GTGATAT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456343 7 +  25972781 ATGATGC
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 257085 7 -    811265 ATGATGC
i chlSab2.chrUn_KE147541v1 C 0 T 281
s manLeu1.NW_012108508v1   324060 7 -    350446 GTGATAC
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441911 7 +   1230721 CTGATGC
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e otoGar3.GL873584         350294 255 +  11138919 T
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=46648.000000
s hg38.chrX_KI270880v1_alt 273766 14 +    284869 TGAAAAGCAAGTAT
s panTro5.chrX             459089 14 + 155549662 TGAAAAGCAAGTAT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493812 14 + 155392059 TGAAAAGCAAGTAT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353618 14 +    417917 TGAAAAGCAAGTAT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165765 13 + 149150640 TG-AGAGCAGGTAT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4623 14 +     47233 TGAAAAGCAAGTAT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456350 14 +  25972781 GGAAAAGCAAGTAT
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256811 14 -    811265 TGAAAAGCAAGTAT
i chlSab2.chrUn_KE147541v1 T 281 C 0
s manLeu1.NW_012108508v1   324067 14 -    350446 TGAAAAGCAGGTAC
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441918 14 +   1230721 AGAAAAGCAAGTAT
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e otoGar3.GL873584         350294 255 +  11138919 T
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=169208.000000
s hg38.chrX_KI270880v1_alt 273780 56 +    284869 AT-CAGAAAAGACTGTGTT-CTACAAATTATGTTTTTAATTGCACtgtgtgtgtgtgt
s panTro5.chrX             459103 56 + 155549662 AT-CAGAAAAGACTGTCTT-CTACAAATTATGTTTTTAATTGCACTGTGTGTGTCTGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493826 56 + 155392059 AT-CAGAAAAGACTGTCTT-CTACAAATTATGTTTTTAATTGCACTGTGTGTGTCTGT
i panPan2.chrX             C 0 T 279
s gorGor5.CYUI01015925v1   353632 55 +    417917 AT-CAGAAAAGACTGTCTT-ATACAAATTATG-TTTTAATTGCACTGCGTGTGTCTGT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165778 57 + 149150640 CT-CAGAAAAGACTGTCTTCCTAGAAATGATGTTTTTAATGGCTCtgtgtgtgtgtgt
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4637 56 +     47233 TT-CAGAAAAGGCTGTGTT-CTACAAATTATGTTTTTAATGGCTgtgtgtatgtgggt
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456364 56 +  25972781 CT-CAGAAAAGACTGTCTG-CTACAAATTATGTTTTTCGTTGCACtgtgtgtgtgtgt
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256825 57 -    811265 TTCCAGAAAATGCTGTGTT-CTACAAATTATGTTTTCAATCGCACTTGGGgtgtgtgt
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324081 48 -    350446 CT-CAGAAAAGACTGTCTT-CTAGAAATTATGTTTTTAAT--------GGCtgtgtgt
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441932 56 +   1230721 CT-CAGATAAGACTGTCTT-CTACAAATTATGTTTTTCATTGCACtgtgtgtgtgtgt
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350039 55 +  11138919 AC-CTGAAAACACCGATCT-CCACAGATGATG-TTTTAATTACACTCGGGGGGTGTGC
i otoGar3.GL873584         T 255 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=5383.000000
s hg38.chrX_KI270880v1_alt 273836 3 +    284869 gtg
s rheMac8.chrX             165835 3 + 149150640 gtg
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4693 3 +     47233 gtg
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456420 3 +  25972781 gtc
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 256882 3 -    811265 gtg
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324129 3 -    350446 gtg
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441988 3 +   1230721 gtg
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350094 3 +  11138919 GTT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459159 0 + 155549662 C
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353687 0 +    417917 C
e panPan2.chrX             493882 279 + 155392059 T

a score=17512.000000
s hg38.chrX_KI270880v1_alt 273839 10 +    284869 tgtgtgtgtg
s panPan2.chrX             493603 10 + 155392059 TGTGTGTGTG
i panPan2.chrX             T 279 C 0
s rheMac8.chrX             165838 10 + 149150640 tgtgtgtgtg
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4696 10 +     47233 tgtgtgtggg
i macFas5.chrUn_KE146044   C 0 I 24
s macNem1.NW_012017243v1   456423 10 +  25972781 tgtgtgtgtg
i macNem1.NW_012017243v1   C 0 I 395
s chlSab2.chrUn_KE147541v1 256885  8 -    811265 tgtgtgtg--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324132  8 -    350446 tgtgtgtg--
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   441991 10 +   1230721 tgtgtgtgtg
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350097  7 +  11138919 TGTTTGT---
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459159  0 + 155549662 C
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e gorGor5.CYUI01015925v1   353687  0 +    417917 C

a score=1911.000000
s hg38.chrX_KI270880v1_alt 273849 1 +    284869 t
s panPan2.chrX             493613 1 + 155392059 T
i panPan2.chrX             C 0 C 0
s rheMac8.chrX             165848 1 + 149150640 t
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4730 1 +     47233 t
i macFas5.chrUn_KE146044   I 24 C 0
s chlSab2.chrUn_KE147541v1 256893 1 -    811265 t
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324140 1 -    350446 t
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   442001 1 +   1230721 t
i colAng1.NW_012115411v1   C 0 I 190
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e otoGar3.GL873584         350104 0 +  11138919 C
e panTro5.chrX             459159 0 + 155549662 C
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I
e gorGor5.CYUI01015925v1   353687 0 +    417917 C

a score=122975.000000
s hg38.chrX_KI270880v1_alt 273850 50 +    284869 TTTAAAATAACAAAACTGCTAAACTCCATGGGAATTACTCAAAATGAATA
s panTro5.chrX             459159 50 + 155549662 TTTAAAATAACAAAACTGCTAAACTCCATGGGAATTAGTCAAAATGAATA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493614 50 + 155392059 TTTAAAATAATAAAACGGCTCAACTCCATGGGAATTAGTCAAAATGAATA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353687 50 +    417917 TTTAAAATAACAAAACTACTCAACTCCATGGGAATTAGTCAAAATGAATA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165849 50 + 149150640 CTTCAAATAACAAAAATTGTAAGCTCCATGGGAATTACTCAAAATGAATA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4731 50 +     47233 TTTAAAATAACAAAAGTGCTAAACTGCACGGAAATTACTCAAAATGAATA
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 256894 50 -    811265 TTTAAAATAACAAAACGGCTAAACTCCATAGGAATTAGTCGAAATGAATA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324141 50 -    350446 TTTCAAATAACAAAAGTTGTAAGCTCCATGGGAATTACTCAAAATAAATA
i manLeu1.NW_012108508v1   C 0 I 602
s otoGar3.GL873584         350104 45 +  11138919 -----AATAACAAAAGTGACAAACTCCACGGGAATTAGTCGAAATGAATT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442002 190 +   1230721 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=25831.000000
s hg38.chrX_KI270880v1_alt 273900 21 +    284869 --TCAGGGAAAGGTTTCCTTCGT
s panTro5.chrX             459209 21 + 155549662 --TCGGGGAAGGGTTTCCTTCGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493664 21 + 155392059 --TCGGGGAAGGGTTTCCTTCGA
i panPan2.chrX             C 0 I 268
s gorGor5.CYUI01015925v1   353737 19 +    417917 --TCGGG--AGGGTTTCCTTCGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165899 18 + 149150640 --ACAGGGGAGGGTTTCCTT---
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4781 21 +     47233 --TTGCAGAAGGGTTTCCTTTGA
i macFas5.chrUn_KE146044   C 0 I 23
s chlSab2.chrUn_KE147541v1 256944 21 -    811265 --ACGGGAAAGGGGTTCCTTCAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s otoGar3.GL873584         350149 23 +  11138919 TCTGGGGGAAGAATTTCATTCCA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324191 602 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442002 190 +   1230721 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=76717.000000
s hg38.chrX_KI270880v1_alt 273921 38 +    284869 TACTTAAACAGATGCCTTTGCAACCTACTATTTTATTT
s panTro5.chrX             459230 38 + 155549662 TACTTAAACAGATGCCTTTGCAAACTACTATTTTATTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493953 38 + 155392059 TACTTAAACAGATGCCTTTGCAAACTACTATTTTATTT
i panPan2.chrX             I 268 C 0
s gorGor5.CYUI01015925v1   353756 38 +    417917 TACTTAAATAGGTGCCTTTGCAACCTACTATTTTATTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165917 31 + 149150640 --CTTAAATAGATGTGTCTGCAACC-----TCTTATTG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     4825 38 +     47233 CACTTAAACACAGGCGTTTGCAACCTACTGTTTTATTT
i macFas5.chrUn_KE146044   I 23 C 0
s chlSab2.chrUn_KE147541v1 256965 38 -    811265 TACTTAAATAGACGCGTTTGCAACCTACTGTTTTATTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324793 38 -    350446 TACTTAAACAGACGCGTTTGCAACCTACTGTTATATTT
i manLeu1.NW_012108508v1   I 602 C 0
s otoGar3.GL873584         350172 37 +  11138919 CACTTGAAATGACATATTTA-GACTCATTGTTTTATTT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442002 190 +   1230721 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=125725.000000
s hg38.chrX_KI270880v1_alt 273959 45 +    284869 TATTATGTCATTTCT-ATGGGAGGAGATTATTTAAAAGGAGGAGCC
s panTro5.chrX             459268 45 + 155549662 TATTATGTCATTTCT-ATCGGAGGAGATTATTTAAAAGGAGGAGCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             493991 45 + 155392059 TATTATGTCATTTCT-ATCGGAGGAGATTATTTAAAAGGAGGAGCC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353794 45 +    417917 TATTATGTCATTTCT-ATGGGAGGAGATTATTTAAAAGGAGGAGCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             165948 45 + 149150640 TATCATGTCATTTCC-ATGGCAGGAGATTATTTAAAAGAAGGGGCC
i rheMac8.chrX             C 0 I 850
s macFas5.chrUn_KE146044     4863 46 +     47233 TATTATGTCATTTCTAAGGGCAGGACATGATTTAAAAGGAGGAGCC
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 257003 46 -    811265 TATTATGTCATTTCTAAGGGCAGGACGTGATTTAAAAGGAGGAGCC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   324831 46 -    350446 TATTATGTCATTTCTAAGGGCAGGACATGATTTAAAAGGAGGAGCC
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   442192 45 +   1230721 tattatgtcgtttct-aCGGAAGGAGGTTATTTAAAAGGAGCAGCC
i colAng1.NW_012115411v1   I 190 C 0
s otoGar3.GL873584         350209 42 +  11138919 TATTAGATCATTTCT-ATGGGGGAAGTTCATCAAAAAGGAGCT---
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=7231.000000
s hg38.chrX_KI270880v1_alt 274004 3 +    284869 CAC
s panPan2.chrX             494036 3 + 155392059 CAC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353839 3 +    417917 CAC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4909 3 +     47233 CAC
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 257049 3 -    811265 CAC
i chlSab2.chrUn_KE147541v1 C 0 I 1120
s manLeu1.NW_012108508v1   324877 3 -    350446 CAC
i manLeu1.NW_012108508v1   C 0 I 4938
s colAng1.NW_012115411v1   442237 3 +   1230721 CAC
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350251 3 +  11138919 CAT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459313 0 + 155549662 C
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=20126.000000
s hg38.chrX_KI270880v1_alt 274007 29 +    284869 ----TTTCTTGCTTTTAAATTTCCAGCCCCAAC--
s panPan2.chrX             494039 29 + 155392059 ----TTTTTTGCTTTTAAATTTCCAGCCCTAAC--
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353842 29 +    417917 ----GTTTTTCGTACGAAATTTCTAGCCCCAAC--
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     4912 29 +     47233 ----GTTTTTTGCACTAAATTTCTAGCCCCAAC--
i macFas5.chrUn_KE146044   C 0 I 264
s colAng1.NW_012115411v1   442240 29 +   1230721 ----GTTTTTCCTTCTAAATCTCCAGCCCCCAA--
i colAng1.NW_012115411v1   C 0 I 2
s otoGar3.GL873584         350254 35 +  11138919 TTTTTTTTTTCCTCCTAAATTTCTATCCCCCAAAC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459313  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=32411.000000
s hg38.chrX_KI270880v1_alt 274036 41 +    284869 CCTTCTGGACATAACTCGTCT-TCCTCTGCAGATTGGAACAG
s panPan2.chrX             494068 38 + 155392059 CCTTCTGGACATAACTCGTCT-TCCTGTG---ATTGGAAAAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353871 41 +    417917 CCTTCTGGACATAACTCGTCT-TCCTCTGCAGACTGGAAAAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5205 41 +     47233 CCTTCCTGACATAACCCACCT-CCCTCTGCAGATTGGAAAGA
i macFas5.chrUn_KE146044   I 264 I 1
s colAng1.NW_012115411v1   442271 42 +   1230721 CCTTCCTGACATAACTGGCCTCCCCTCTGCAGATTGGGACAG
i colAng1.NW_012115411v1   I 2 I 55
s otoGar3.GL873584         350289 41 +  11138919 CTTTCCCCGTATAAGCCATCT-TCCCCTGCAGACTGGAAGCG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459313  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=6338.000000
s hg38.chrX_KI270880v1_alt 274077 11 +    284869 ATGATTTTGCC
s panPan2.chrX             494106 11 + 155392059 ATGATTTTGCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353912 11 +    417917 ATGATTTTGCC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5247 11 +     47233 GCGATTCTACC
i macFas5.chrUn_KE146044   I 1 C 0
s otoGar3.GL873584         350330 11 +  11138919 TTAATTTTACC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e panTro5.chrX             459313  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442313 55 +   1230721 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=34852.000000
s hg38.chrX_KI270880v1_alt 274088 47 +    284869 GTCCAAGCATCCACCGGTGC-TGTAGGAGAAGACGCACCGTGTTAGGT
s panTro5.chrX             459313 47 + 155549662 GTCCAAGCATCCACCGGTGC-TGTAGGAGAAGACGCACCGTGTTAGGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494117 47 + 155392059 GTCCACGCATCCACCGGTGC-TGTAGGAGAAGACGCACCGTGTTAGGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353923 47 +    417917 GTCCAAGCATCCACCGGTGC-TGTAGGAGAAGACGCACCGTGTTAGGT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5258 47 +     47233 GGCCGAGCATCCCCCAGGGC-CGTAGAAGACGATGCCCTGTGTGAGGT
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350341 35 +  11138919 CCCTAAGAATCTGTAAATTCTTATA-------------CGTGTTGGGC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442313 55 +   1230721 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=22215.000000
s hg38.chrX_KI270880v1_alt 274135 25 +    284869 AGGTCAGCTGGCTCTGAGTTGAAAG----
s panTro5.chrX             459360 25 + 155549662 AGGTCAGCTGGCTCTGAGTTGAAAG----
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494164 25 + 155392059 AGGTCAGCTGGCTCTGAGTTGAAAG----
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353970 25 +    417917 AGGTCAGCTGGCTCTGAGTTGAAAG----
i gorGor5.CYUI01015925v1   C 0 C 0
s colAng1.NW_012115411v1   442368 25 +   1230721 AGGTCAGCCGGCTCTGAGTTGAAAG----
i colAng1.NW_012115411v1   I 55 I 102
s otoGar3.GL873584         350376 25 +  11138919 ---CCGCTTTGCCCTGAA-TGAGAGAGAG
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I
e macFas5.chrUn_KE146044     5305  0 +     47233 C

a score=58201.000000
s hg38.chrX_KI270880v1_alt 274160 88 +    284869 TGTCACCCAAACCCAGGAGATCCAGGGCAGAAATTGTTTTAGTTCCACAGAGCAGCCACGGGTGCACCGTCTGTGTATCTCTGTCAGT
s panTro5.chrX             459385 88 + 155549662 AGTCACCCAAACCCAGGAGGTCCAGGGCAGACATTGTTTTAGTTCCACAGAGCAGCCAAGGGTGCACCGTCTGTGTATCTCTGTCAGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494189 88 + 155392059 AGTCACCCAAACCCAGCAGGTCCAGGGCAGACATTGTTTTAGTTCCACAGAGCAGCCAAGGGTGCACCGTCTGTGTATCTCTGTCAGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   353995 88 +    417917 AGTCACCCAAACCCAGGAGGTCCAGGGCAGAAATTGTTTTAGTTCCACAGAGCAGCCACGGGTGCACCGTCTGTGTGTCTCTGTCAGT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5305 41 +     47233 ---------------------------------------CAGGTCCACAAAGCCGCCACGCGTGCACTGTCTGTGCG--------AGT
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350401 80 +  11138919 ATTTACACAAACAGCTCATGCAAAGGGCTGGCATATTTTTAGGTCCACAAAGCACCAGAGTCTGCACCGTCTGTGTA--------GCT
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             388135 557 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442393 102 +   1230721 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=18754.000000
s hg38.chrX_KI270880v1_alt 274248 19 +    284869 GATGCAATCCAATGCATCT
s panTro5.chrX             459473 19 + 155549662 GATGCAATCCAATGCATCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494277 19 + 155392059 GATGCAATCCAATGCATCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354083 19 +    417917 GACGCAATCCAATGCATCT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5346 19 +     47233 GACTCTGCTGAATACATTT
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350481 19 +  11138919 GGTACAATATAGTAAATTT
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388692 19 + 123869142 GGCACAATGTAATAAATTT
i canFam3.chrX             I 557 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442393 102 +   1230721 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=47344.000000
s hg38.chrX_KI270880v1_alt 274267 39 +    284869 GGCAAAGGGAACGCA-GGGGGCTGCGAGGAAGGCCCATTC
s panTro5.chrX             459492 39 + 155549662 GGCAAAGGGAACGCA-GGGGGCTGCGAGGAAGGCCCATTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494296 39 + 155392059 GGCAAAGGGAACGCG-GGGGGCTGCGAGGAAGGCCCATTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354102 39 +    417917 GGCAAAGGGAACGCG-GGGGGCTGCGGGGAAGGCCCATTT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5365 38 +     47233 GGCAAAGGGAAGGCA--GGTGCTGCAAGGGAGGCCCATTC
i macFas5.chrUn_KE146044   C 0 C 0
s colAng1.NW_012115411v1   442495 39 +   1230721 GGCAAAGGCAAGGCA-GGGCGCTGCCAGGAAGGCCCATTC
i colAng1.NW_012115411v1   I 102 I 46
s otoGar3.GL873584         350500 39 +  11138919 GGCAGGAGAGAAATC-GGGGACCCTGATTATGGCTCATTC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388711 35 + 123869142 AGCGCAAGCAAACCAGGGGGGCTGTGATTACGCTC-----
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=15046.000000
s hg38.chrX_KI270880v1_alt 274306 29 +    284869 GAGTGGCCTGTAAAAATGCTGAAAGCTCC-------
s panTro5.chrX             459531 29 + 155549662 GAGTGGCCTGTAAAAATGCTGAAAGCTCC-------
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494335 29 + 155392059 GAGTGGCCTGTAAAAATGCTGAAAGCTCC-------
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354141 29 +    417917 GAGTGGCCTGTAAAAATGCTTAAAGTTCC-------
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5403 27 +     47233 AGATGGC--ACAGAAATGCTCCAAGTCCA-------
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         350539 28 +  11138919 AAATAGGATGTA-AATTGGTCAAAGCAAA-------
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388746 35 + 123869142 AAATAGGGTGTA-AATGGGTCAAAGCAGAGGAGCTG
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442534 46 +   1230721 I
e rheMac8.chrX             165993 850 + 149150640 I
e macNem1.NW_012017243v1   456433 395 +  25972781 I

a score=9100.000000
s hg38.chrX_KI270880v1_alt 274335 4 +    284869 ATAC
s panTro5.chrX             459560 4 + 155549662 ATAC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494364 4 + 155392059 ATAC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354170 4 +    417917 ATAC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             166843 4 + 149150640 ATAC
i rheMac8.chrX             I 850 C 0
s macFas5.chrUn_KE146044     5430 4 +     47233 ATAC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456828 4 +  25972781 ATAC
i macNem1.NW_012017243v1   I 395 C 0
s otoGar3.GL873584         350567 4 +  11138919 ATAA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388781 4 + 123869142 AGGC
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         272256 2864 +    465904 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442534 46 +   1230721 I

a score=24460.000000
s hg38.chrX_KI270880v1_alt 274339 12 +    284869 -ACCTTCCCTGTC
s panTro5.chrX             459564 12 + 155549662 -ACCTTCCCTGTC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494368 12 + 155392059 -ACCTTCCCTGTC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354174 12 +    417917 -ACCTTCCCTGTC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             166847 12 + 149150640 -GCCTTCCCTGTC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5434 12 +     47233 -GCCTTCCCTGTC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456832 12 +  25972781 -GCCTTCCCTGTC
i macNem1.NW_012017243v1   C 0 C 0
s saiBol1.JH378345         275120 12 +    465904 -ACCTTCCTTGTG
i saiBol1.JH378345         I 2864 I 2
s otoGar3.GL873584         350571 12 +  11138919 -GCCCTGAGTGGC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388785 12 + 123869142 AGCCCACGCGGG-
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e colAng1.NW_012115411v1   442534 46 +   1230721 I

a score=144446.000000
s hg38.chrX_KI270880v1_alt 274351 55 +    284869 TCTGGGATTCTCAGCATCCTGCTCTGCCCTCCAAGTACAGGTCGCTGACCCACCT
s panTro5.chrX             459576 55 + 155549662 TCTGGGATTCTCAGCATCCTGCTCTGCCCTCCAAGTACAGGTCGCTGACCCACCC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494380 55 + 155392059 TCTGGGATTCTCAGCATCCTGCTCTGCCCTCCAAGTACAGGTCGCTGACCCACCC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354186 55 +    417917 TCTGGGATTCTCAGCATCCTGCTCTGCCCTCCAAGTACAGGTCGCTGACCCACCC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             166859 55 + 149150640 TGTGGGAGTCTCAGCCTCCTGCTCCGTCCACCTAGGACAGGTCCCTGACCCACCC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5446 55 +     47233 TCTGGGAGTCTCAGCCTCCTGCTCCGTCCACCTAGGACAGGTCCCTGACCCACCC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456844 55 +  25972781 TCTGGGAGTCTCAGCCTCCTGCTCCGTCCACCTGCAACAGGTCCCTGACCCACCC
i macNem1.NW_012017243v1   C 0 C 0
s colAng1.NW_012115411v1   442580 55 +   1230721 TCTGGGACGCTCAGCCTCCTGCTCTGTCCACGCAGAACAGGTTGCTGACCCACCC
i colAng1.NW_012115411v1   I 46 C 0
s saiBol1.JH378345         275134 54 +    465904 TGTGGGAATCTCAGCGTCCTCCTCTCTCCACTAAGCCCAGGCCGCTGACCCGCC-
i saiBol1.JH378345         I 2 C 0
s otoGar3.GL873584         350583 45 +  11138919 CCTGGGACCGTTAGCACCCCGGCCT-CCCCCCTGGTGTGGGTCTCT---------
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388797 51 + 123869142 CCGCGGATGCTTAGCATGTTTCTCT---CCCCCGCCGTGGGTCGCTGACCCCTC-
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 257052 1120 -    811265 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=258510.000000
s hg38.chrX_KI270880v1_alt 274406 75 +    284869 CCCACCCCTGCCCACCTCCAATCACATG--CCTTGCACCCCTT--CCTACCATTAGGCCTGCCGCTAAGGACCTGATTA
s panTro5.chrX             459631 75 + 155549662 CCCACCCCTGCCGACCTCCAATCACATG--CCTTGCACCCCTT--CCTACCATTAGGCCTACCGCTAAGGACCTGATTA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494435 75 + 155392059 CCCACCCCTGCCGACCTCCAATCACATG--CCTTGCACCCCTT--CCTACCATTAGGCCTACCGCTAAGGACCTGATTA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354241 75 +    417917 CCCACCCCTGCCCACCTCCAATCACATG--CCTTGCACCCCTT--CCTACCACTAGGCCTGCCGCTAAGGACCTGATTA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             166914 75 + 149150640 CCCAGGCCCGCCCACCTCCAATCACACC--CCTTCCACCCCTT--CCTACCATGACGGCTGCCACTGAGGACCTGATTA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5501 75 +     47233 CCCAGGCCCGCCCACCTCCAATCACACC--CCTTCCACCCCTT--CCTACCATGACGGCTGCCACTGAGGACCTGATTA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   456899 75 +  25972781 CCCAGGCCCGCCCACCTCCAATCGCACC--CCTTCCACCCCTT--CCTACCATGACGGCTGCCACTGAGGACCTGATTA
i macNem1.NW_012017243v1   C 0 I 3977
s chlSab2.chrUn_KE147541v1 258172 75 -    811265 CCCACGCCCGCCCACCTCCACTCACACC--CCTTCCACCCCTT--CCTGCCATGACGGCTGCCACTGAGGACCTGATTA
i chlSab2.chrUn_KE147541v1 I 1120 C 0
s colAng1.NW_012115411v1   442635 77 +   1230721 CCCAAGCCCGCCCACCTCCCATCACACCCGCCTTCCACCCCTT--CCTGCCCTGACGGCTGCCACCGAGGACCTGATTA
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         275188 65 +    465904 ----CCCCTGCCA-----CAATGACACA--TCCTCCACCCGTC--TCTGCCGTCA-GGCTGCCACTGAGGACCTGATTA
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         350628 64 +  11138919 ------------CACCCCTAATCACGGC--CCCTCTGCCCGCTCGCCCGCCATTT-GGCTGCCGCTAAGGACCTGATTA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388848 53 + 123869142 --------------------ATCACGGC--TCCACCGCCCGTC--CCACCCTTT--GGCAGCCGCTAAGGACCTGATTA
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I

a score=140277.000000
s hg38.chrX_KI270880v1_alt 274481 45 +    284869 GCTATAAATTTAT-GGCAATCCGCAACCACCGG-CCTTCCCCTCCTG
s panTro5.chrX             459706 45 + 155549662 GCTATAAATTTAT-GGCAATCCGCAACCACCGG-CCTTCCCCTCCTG
i panTro5.chrX             C 0 I 3
s panPan2.chrX             494510 45 + 155392059 GCTATAAATTTAT-GGCAATCCGCAACCACCGG-CCTTCCCCTCCTG
i panPan2.chrX             C 0 I 3
s gorGor5.CYUI01015925v1   354316 45 +    417917 TCTATAAATTTAT-GGCAATCCACAACCACCGG-CCTTCCCCTCCTG
i gorGor5.CYUI01015925v1   C 0 I 3
s rheMac8.chrX             166989 47 + 149150640 TCTAACAACGTATGGGGCATCTGCAACCACCAGCCCTTCCCCTCCTC
i rheMac8.chrX             C 0 I 3
s macFas5.chrUn_KE146044     5576 47 +     47233 TCTAACAACGTATGGGGCATCTGCAACCACCAGCCCTTCCCCTCCTC
i macFas5.chrUn_KE146044   C 0 I 3
s chlSab2.chrUn_KE147541v1 258247 46 -    811265 TCTCACAACGTCT-GGGCATCCGCAACCCCCAGCCCTTCCCCTCCTC
i chlSab2.chrUn_KE147541v1 C 0 I 3
s colAng1.NW_012115411v1   442712 45 +   1230721 TCGAAGAATTTAC-GGGAATCTGCAACCACCGG-CCTTCCCCTCCTG
i colAng1.NW_012115411v1   C 0 I 3
s saiBol1.JH378345         275253 45 +    465904 TCTATAAATTTAT-GGGAATCCACAAACACGGG-CCTTTCCCTCCTG
i saiBol1.JH378345         C 0 I 5
s otoGar3.GL873584         350692 45 +  11138919 TCTATAAATTTAT-GGGAATCCTCAACAACCGA-CCTTCCTCTCCTG
i otoGar3.GL873584         C 0 I 3
s canFam3.chrX             388901 45 + 123869142 TCTATAAATTTAT-GGGGATCCGCAACAACTGG-CCTTCCCCGTCTG
i canFam3.chrX             C 0 I 3
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   318588 99 -   1025902 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=150359.000000
s hg38.chrX_KI270880v1_alt 274526 25 +    284869 ATGTTTTCTGACACATTTCAGGAGA
s panTro5.chrX             459754 25 + 155549662 ATGTTTTCTGACACATTTCAGGAGA
i panTro5.chrX             I 3 C 0
s panPan2.chrX             494558 25 + 155392059 ATGTTTTCTGACACATTTCAGGAGA
i panPan2.chrX             I 3 C 0
s gorGor5.CYUI01015925v1   354364 25 +    417917 ATGTTTTCTGACACATTTCAGGAGA
i gorGor5.CYUI01015925v1   I 3 C 0
s rheMac8.chrX             167039 25 + 149150640 ATGTTTTCTGACACATTTCAGGAGA
i rheMac8.chrX             I 3 I 141
s macFas5.chrUn_KE146044     5626 25 +     47233 ATGTTTTCTGACACATTTCAGGAGA
i macFas5.chrUn_KE146044   I 3 C 0
s cerAty1.NW_012001098v1   318687 25 -   1025902 ATGTTTTCTGACACATTTCAGGAGA
i cerAty1.NW_012001098v1   I 99 I 55
s chlSab2.chrUn_KE147541v1 258296 25 -    811265 ATGTTTTCTGACACATTTCAGGAGA
i chlSab2.chrUn_KE147541v1 I 3 C 0
s colAng1.NW_012115411v1   442760 25 +   1230721 ATGTTTTCTGACACATTTCAGGAGA
i colAng1.NW_012115411v1   I 3 C 0
s saiBol1.JH378345         275303 25 +    465904 ATGTTTTCTGACATGTTTCAGGAGA
i saiBol1.JH378345         I 5 C 0
s otoGar3.GL873584         350740 25 +  11138919 ATGTTTTCTGACACATTTCAGGAGA
i otoGar3.GL873584         I 3 C 0
s canFam3.chrX             388949 25 + 123869142 ATGTTTTCTGACACATTTCAGGAGT
i canFam3.chrX             I 3 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=8363.000000
s hg38.chrX_KI270880v1_alt 274551 3 +    284869 CGC
s panTro5.chrX             459779 3 + 155549662 TGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494583 3 + 155392059 CGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354389 3 +    417917 TGC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5651 3 +     47233 GGC
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 258321 3 -    811265 GGC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   442785 3 +   1230721 CGC
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         275328 3 +    465904 CGC
i saiBol1.JH378345         C 0 I 50
s otoGar3.GL873584         350765 3 +  11138919 CGC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388974 3 + 123869142 CGC
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   318712 55 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=1577.000000
s hg38.chrX_KI270880v1_alt 274554 1 +    284869 A
s panTro5.chrX             459782 1 + 155549662 A
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494586 1 + 155392059 A
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354392 1 +    417917 A
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5654 1 +     47233 A
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 258324 1 -    811265 A
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   442788 1 +   1230721 A
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         350768 1 +  11138919 G
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             388977 1 + 123869142 G
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275331 50 +    465904 I
e cerAty1.NW_012001098v1   318712 55 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=2800.000000
s hg38.chrX_KI270880v1_alt 274555 1 +    284869 G
s panTro5.chrX             459783 1 + 155549662 G
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494587 1 + 155392059 G
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354393 1 +    417917 G
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 258325 1 -    811265 G
i chlSab2.chrUn_KE147541v1 C 0 I 55
s colAng1.NW_012115411v1   442789 1 +   1230721 G
i colAng1.NW_012115411v1   C 0 I 72
s otoGar3.GL873584         350769 1 +  11138919 G
i otoGar3.GL873584         C 0 I 46
s canFam3.chrX             388978 1 + 123869142 G
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275331 50 +    465904 I
e cerAty1.NW_012001098v1   318712 55 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     5655 0 +     47233 C

a score=592.000000
s hg38.chrX_KI270880v1_alt 274556 11 +    284869 ------------------------------------AATACAGGCTC----------
s panTro5.chrX             459784 11 + 155549662 ------------------------------------AATACAGGCTC----------
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494588 11 + 155392059 ------------------------------------AATACAGGCTC----------
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354394 11 +    417917 ------------------------------------AATACAGGCTC----------
i gorGor5.CYUI01015925v1   C 0 C 0
s otoGar3.GL873584         350816 11 +  11138919 ------------------------------------CACACAGGCAA----------
i otoGar3.GL873584         I 46 I 10
s canFam3.chrX             388979 57 + 123869142 CTGATGTGCGAGGCATTATGTACGCGGGGCTGCCTGTACACAGGCAATGAGCCTGCA
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275331 50 +    465904 I
e chlSab2.chrUn_KE147541v1 258326 55 -    811265 I
e cerAty1.NW_012001098v1   318712 55 -   1025902 I
e colAng1.NW_012115411v1   442790 72 +   1230721 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     5655  0 +     47233 C

a score=2642.000000
s hg38.chrX_KI270880v1_alt 274567 3 +    284869 -GCT
s panTro5.chrX             459795 3 + 155549662 -GCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494599 3 + 155392059 -GCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354405 3 +    417917 -GCT
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   318767 3 -   1025902 -GCT
i cerAty1.NW_012001098v1   I 55 C 0
s saiBol1.JH378345         275381 3 +    465904 -GCT
i saiBol1.JH378345         I 50 C 0
s otoGar3.GL873584         350837 3 +  11138919 -GCC
i otoGar3.GL873584         I 10 C 0
s canFam3.chrX             389036 3 + 123869142 GAC-
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 258326 55 -    811265 I
e colAng1.NW_012115411v1   442790 72 +   1230721 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     5655 0 +     47233 C

a score=66841.000000
s hg38.chrX_KI270880v1_alt 274570 42 +    284869 GGTCCACCCGAGA--CCCC-TGGCTGCAGAAACAG-CCCGGCTCGT
s panTro5.chrX             459798 42 + 155549662 GGTCCACCCGAGA--CCCC-TGGCTGCAGAAACAG-CCCGGCTCAT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494602 42 + 155392059 GGTCCACCCGAGA--CCCC-TGGCTGCAGAAACAG-CCCGGCTCGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354408 43 +    417917 GGTCCACCCGAGA--CCCCTTGGCTGCAGAAACAG-CCCGACTCGT
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   318770 44 -   1025902 GGTCCACCCGAGACGCCCC-CGGCTGCAGAGACAG-CCCGGTTCAG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 258381 45 -    811265 GGTCCACCCGAGACGCCCC-TGGCTGCACAAACAGCCCCGGTTCAG
i chlSab2.chrUn_KE147541v1 I 55 C 0
s saiBol1.JH378345         275384 42 +    465904 GGTCCGGCCCAGA--CCCC-CGGCTGCAGGAACGT-CTCCGCGAAG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         350840 39 +  11138919 GGTCCATTGGAGA--CCTC-TGGCTGGAGAGAT-G-CTCGCCAG--
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             389039 39 + 123869142 GGTCCATCGGAGA--CCTC-TGGCTACAGACA-AG-CACGCCAG--
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e colAng1.NW_012115411v1   442790 72 +   1230721 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     5655  0 +     47233 C

a score=132517.000000
s hg38.chrX_KI270880v1_alt 274612 45 +    284869 GAACACAGTTGCCGTGGTAACATGCCCCCCAGCTGTAGCCGGCCT
s panTro5.chrX             459840 45 + 155549662 GAACACGGTTGCCGTGGTAACATGCCCCTCAGCTGTAGCCGGCCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494644 45 + 155392059 GAACACGGTTGCCGTGGTAACATGCCCCTCAGCTGTAGCCGGCCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354451 45 +    417917 GAACACAGTTGCCGTGGTAACATGCCCCTCAGCTGTAGCCGGCCT
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   318814 45 -   1025902 GAACACGGTTGCCGTGGCAACCTGCCCCACAGCTGTGGACGGCCT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 258426 45 -    811265 GATCACGGTTGCCGTGGCAACGTGCCCCCCAGCTGTGGGCGGCCT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   442862 45 +   1230721 GAACACAGTTGCCGTGGCAACCTGCCCCACAGCTCTGGACGGCCT
i colAng1.NW_012115411v1   I 72 C 0
s saiBol1.JH378345         275426 45 +    465904 AAACCCAGTTACCGTGGAAACGTGGCCCTCAGGTGCCGCCGACCC
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         350879 45 +  11138919 GAAAGCCGTTGCCGTGGCAACGTGCCCCACAGCTGTAGCGAGACT
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             389078 45 + 123869142 AAAAGCGGTTTCCATGGCAACGTGCCCCACAGCTGTAGTTAGACT
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     5655  0 +     47233 C

a score=139830.000000
s hg38.chrX_KI270880v1_alt 274657 60 +    284869 AGGAAAACTACGTGGACAAGGATGATTTTTTCA--CAAGTtttattttttatttatttactt
s panTro5.chrX             459885 60 + 155549662 AGGAAAACTACGTGGACAAGGATGATTTTTTCA--CAAGTtttattttttatttatttactt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494689 60 + 155392059 AGGAAAACTACGTGGACAAGGATGATTTTTTCA--CAAGTtttattttttatttatttactt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354496 59 +    417917 AGGAAAACTACGTGG-CAAGGATGATTTTTTCA--CAAGTtttattttttatttatttactt
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5655 59 +     47233 AGGAAAACTCCTTGTCCGACGATGATCG-CTCA--CAAGTTTTATTCTTTATTTATTTACTT
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318859 59 -   1025902 AGGAAAACCCCTTGTCCAACGACGATCG-TTCA--CAAGTTTTATTCTTTATTTATTTACTT
i cerAty1.NW_012001098v1   C 0 I 79
s chlSab2.chrUn_KE147541v1 258471 60 -    811265 AGGAAAACGCCTTGTCCCACGATCATCGTTTCA--CAAGTTTTATTCTTTATTTATTTACTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   442907 59 +   1230721 CGGAAAACGCCTCGTCCGAAGATGGTTG-TTCG--CAAGTTTTATTCTTTATTTATTTACTG
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         275471 59 +    465904 GGAAAAGCTGCTTGC---AGGATGATCATCTCAACCAAGTGTTATTTTTTATTTATTTACCG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         350924 56 +  11138919 AGGAAAAATAGTTTT------ATGATTATTTCAATGAAGtttctttctttctcttctttctt
i otoGar3.GL873584         C 0 I 4
s canFam3.chrX             389123 52 + 123869142 AGGAAAAATagtttt------atgattatttcaacgaagtttctttttttttcttttt----
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=25865.000000
s hg38.chrX_KI270880v1_alt 274717 16 +    284869 GGGACCTTTTGTT-----------------TGG
s panTro5.chrX             459945 16 + 155549662 GCGACCTTTTGTT-----------------TGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494749 16 + 155392059 GCGACCTTTTGTT-----------------TGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354555 16 +    417917 GGGACCTTTTGTT-----------------TGG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5714 16 +     47233 AAGGCCTCTCGTG-----------------TGG
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 258531 16 -    811265 AAGGCCTGTTGTG-----------------TGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   442966 16 +   1230721 GAGGCCTTTTGTG-----------------TGG
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         275530 33 +    465904 GGGCCCTTTTTCTTTTTTTTTTTTTTTTCCTGG
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         350984 16 +  11138919 tcCAGCTTTTGTT-----------------TTG
i otoGar3.GL873584         I 4 C 0
s canFam3.chrX             389175 12 + 123869142 ----ctttttgtt-----------------tgg
i canFam3.chrX             C 0 I 3432
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   318918 79 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=7294.000000
s hg38.chrX_KI270880v1_alt 274733 3 +    284869 CAG
s panTro5.chrX             459961 3 + 155549662 CAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494765 3 + 155392059 CAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354571 3 +    417917 CAG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5730 3 +     47233 CAG
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 258547 3 -    811265 CAG
i chlSab2.chrUn_KE147541v1 C 0 I 119
s colAng1.NW_012115411v1   442982 3 +   1230721 CGG
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         275563 3 +    465904 CAG
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351000 0 +  11138919 C
e cerAty1.NW_012001098v1   318918 79 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=14874.000000
s hg38.chrX_KI270880v1_alt 274736 11 +    284869 CCGGACG---GTGC
s panTro5.chrX             459964 11 + 155549662 CCGGACG---GTGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494768 11 + 155392059 CCGGACG---GTGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354574 11 +    417917 CCGGACG---GTGC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5733 11 +     47233 GTGGACG---GTGC
i macFas5.chrUn_KE146044   C 0 I 16
s colAng1.NW_012115411v1   442985 11 +   1230721 CCGGACG---GTGC
i colAng1.NW_012115411v1   C 0 I 9184
s saiBol1.JH378345         275566 13 +    465904 CCGGACGTTTGTG-
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         351000  9 +  11138919 --GAATG---CTAC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e cerAty1.NW_012001098v1   318918 79 -   1025902 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=7758.000000
s hg38.chrX_KI270880v1_alt 274747 14 +    284869 AGCTTTTTCTCTGC
s panTro5.chrX             459975 14 + 155549662 AGCTTTTTCTCTGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494779 14 + 155392059 AGCTTTTTCTCTGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354585 14 +    417917 AGGTTTCTCTCTGC
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5760 14 +     47233 agttatttatttGC
i macFas5.chrUn_KE146044   I 16 I 17
s saiBol1.JH378345         275579 14 +    465904 GGCTTTTGCGATGG
i saiBol1.JH378345         C 0 I 3
s otoGar3.GL873584         351009  4 +  11138919 AGCT----------
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e cerAty1.NW_012001098v1   318918 79 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=755.000000
s hg38.chrX_KI270880v1_alt 274761 1 +    284869 A
s panTro5.chrX             459989 1 + 155549662 A
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494793 1 + 155392059 A
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354599 1 +    417917 A
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     5791 1 +     47233 G
i macFas5.chrUn_KE146044   I 17 C 0
s cerAty1.NW_012001098v1   318997 1 -   1025902 A
i cerAty1.NW_012001098v1   I 79 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275593 3 +    465904 I
e otoGar3.GL873584         351013 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             167064 141 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=46277.000000
s hg38.chrX_KI270880v1_alt 274762 24 +    284869 CGGAGTCTGGTTGTGTCTACACAC
s panTro5.chrX             459990 24 + 155549662 CGGAGTCTGGTTGTGTCTACACAC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494794 24 + 155392059 CGGAGTCTGGTTGTGTCTACACAC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354600 24 +    417917 AGGAGTCTGCTTGTGTCCACACAC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167205 24 + 149150640 CGGAGTCTGGATATGTCGACACGC
i rheMac8.chrX             I 141 C 0
s macFas5.chrUn_KE146044     5792 24 +     47233 CGGAGTCTGGATATGTCGACACGC
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   318998 24 -   1025902 CGGAGTCTGGATATGTCTACACGC
i cerAty1.NW_012001098v1   C 0 C 0
s saiBol1.JH378345         275596 24 +    465904 GGGTGTGTCTATGTGTCCACACTC
i saiBol1.JH378345         I 3 C 0
s otoGar3.GL873584         351013 24 +  11138919 CCGAAGCGGGTTTTGTTCAGACAC
i otoGar3.GL873584         C 0 I 2352
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=43381.000000
s hg38.chrX_KI270880v1_alt 274786 20 +    284869 ACAGGCAACACGC----ATAGATG
s panTro5.chrX             460014 20 + 155549662 ACAGGCAACACGC----ATAGATG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494818 20 + 155392059 ACAGGCAACACGC----ATAGATG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354624 20 +    417917 ACAGGCAACACAC----ACTGATG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167229 20 + 149150640 ACGGGCAACACGC----ATAGATG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5816 20 +     47233 ACGGGCAACACGC----ATAGATG
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   319022 24 -   1025902 ACGGGCAACACACGCATATAGATG
i cerAty1.NW_012001098v1   C 0 C 0
s saiBol1.JH378345         275620 20 +    465904 ACAGGCAACACGC----ATGGATG
i saiBol1.JH378345         C 0 I 1069
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=43535.000000
s hg38.chrX_KI270880v1_alt 274806 30 +    284869 GAC----ATAAAACTATCCCCTCCCAAGACTTGC
s panTro5.chrX             460034 30 + 155549662 GAC----ATAAAACTATCCCCTCCCAAGGCTTGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494838 30 + 155392059 GAC----ATAAAACTATCCCCTCCCAAGGCTTGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354644 30 +    417917 GAC----ATAAAACTATCCCCTCCCAAGGCTTGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167249 34 + 149150640 GACGTGAACAAAACAGTTGCCTCCCGAGGCTTGC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5836 34 +     47233 GACGTGAACAAAACAGTTGCCTCCCGAGGCTTGC
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   319046 34 -   1025902 GACGTGAACAAAACTGTTGCCTCCCGAGGCTTGC
i cerAty1.NW_012001098v1   C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275640 1069 +    465904 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e chlSab2.chrUn_KE147541v1 258550 119 -    811265 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=283650.000000
s hg38.chrX_KI270880v1_alt 274836 137 +    284869 AAAGGATG-CACGTTTTTCAGGCTGCAGCCAGGACGAGGGAGAGGTAGAGGTTGTAGTTA-TTGAGTAGGGGAGTCCCAAGAAAATCGTTGCCATAGGAAAGAAA-cagtggctcacgtctctcattccagcactttggg
s panTro5.chrX             460064 138 + 155549662 AAAGGATG-CACGTTTTTCAGGCTGCAGCCAGGACGAGGGAGAGGTAGAGGTTGTAGTTACTTGAATAGGGGAGTCCCAAGAAAATCATTGCCATAGGAAAGAAA-cagtggctcacgcctgtaatcccagcactttggg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             494868 138 + 155392059 AAAGGATG-CACGTTTTTCAGGCTGCAGCCAGGACGAGGGAGAGGTAGAGGTTGTAGTTACTTGAATAGGGGAGTCCCAAGAAAATCATTGCCATAGGAAAGAAA-cagtggctcacgcctgtaatcccagcactttggg
i panPan2.chrX             C 0 M 1256
s gorGor5.CYUI01015925v1   354674 139 +    417917 AAAGGATGCCACGTTTTTCAGGCTGCAGCCAGGACGAGGGAGAGGTAGAGGTTGTAGTTACTTGAATAGGGGAGTCCCAAGAAAATCGTTGCCATAGGAAAGAAA-cagtggctcatgtctgtcattccagcactttggg
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167283 139 + 149150640 GAGGGATG-CACGTTGTTCAGGCTGCAGACGGCACGAGCGAGAGGCAGGGGTTGTAGCTCCTTGAATGGGGTAGTCCAAAGACAATCGTGGCTATAGGAAAGAAAGGggtggctcacgcctgtcatcccagcactttggg
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     5870 139 +     47233 GAGGGATG-CACGTTGTTCAGGCTGCAGACGGCACGAGCGAGAGGCAGGGGTTGTAGCTCCTTGAATGGGGTAGTCCAAAGACAATCGTGGCTATAGGAAAGAAAGGggtggctcacgcctgtcatcccagcactttggg
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   319080 139 -   1025902 GAGGGATG-CACGTTGTTCAGGCTGCAGCCGGCAGGAGCGAGAGCCAGGGGTTGTAGTTCCTTGAACGGGGTAGTCCAAAGACAATCGTGGCTATTGGAAAGAAAGGggcggctcacgcctgtcatcccagcactttggg
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 258669 139 -    811265 GAGGGACG-CACGTTGTTCAGGCTGCAGCCGGCACGAGCCAGAGGCAGGGGTTGCAGTTCCTTGAATGGGGTAGTCCGAAGACAATCGTGGCTATAGGAAAGAAAGGggtggctcacacctgtcatcccagcgctttggg
i chlSab2.chrUn_KE147541v1 I 119 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275640 1069 +    465904 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=113096.000000
s hg38.chrX_KI270880v1_alt 274973 70 +    284869 aggccgaggcg-ggcggatcaactgaggtcaggagtttgagaccagcctggccaacatagtgaaaccccg-c
s panTro5.chrX             460202 71 + 155549662 aggccgaggcg-ggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354813 71 +    417917 aggtagaggtgcggcggatcaactgaggtcaggagttcgagaccagcgtggccaacatggtgaaacccgt-c
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167422 71 + 149150640 aggccgaggcg-ggcggatcacttgaggtcaggagttcgagaccagcctggccaacatagtgaaaacccgtc
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     6009 71 +     47233 aggctgaggcg-ggtggatcacctgaggtcaggagttcgagaccagcctggccaacatagtgaaaccccgtc
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   319219 71 -   1025902 aggccgaggcg-ggtggagcacctgaggttgagagttcgagaccagcctggccaacatggtgaaaccccgtc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 258808 71 -    811265 aggctgaggcg-ggcggatcgcttgaggtcaggagtttgagaccagcctggccaacatggagaaaccccgtc
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         275640 1069 +    465904 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e panPan2.chrX             495006 1256 + 155392059 M

a score=21728.000000
s hg38.chrX_KI270880v1_alt 275043 9 +    284869 tctactaaa
s panTro5.chrX             460273 9 + 155549662 tctactaaa
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354884 9 +    417917 tctactaaa
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167493 9 + 149150640 tctactaaa
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     6080 9 +     47233 tctactaaa
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   319290 9 -   1025902 tctactaaa
i cerAty1.NW_012001098v1   C 0 I 2676
s chlSab2.chrUn_KE147541v1 258879 9 -    811265 tctactaaa
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         276709 9 +    465904 TCCGCTAAA
i saiBol1.JH378345         I 1069 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e panPan2.chrX             495006 1256 + 155392059 M

a score=25220.000000
s hg38.chrX_KI270880v1_alt 275052 20 +    284869 aatacaaaaattagccaggc
s panTro5.chrX             460282 20 + 155549662 aatacaaaaattagccacgc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354893 20 +    417917 aatacaaaCAGTAgccaggt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167502 20 + 149150640 aatacaaaaattagccgggc
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     6089 20 +     47233 aatacaaaaattagccgggc
i macFas5.chrUn_KE146044   C 0 I 1001
s chlSab2.chrUn_KE147541v1 258888 20 -    811265 aatacaaaaattagccgggc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         276718 19 +    465904 -GAAAGAAATGCggccgggc
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e panPan2.chrX             495006 1256 + 155392059 M

a score=118196.000000
s hg38.chrX_KI270880v1_alt 275072 103 +    284869 acggtggctcacgcctgtaatcccagcactttgggaggtcaaggcgggaggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacccc
s panTro5.chrX             460302 103 + 155549662 atggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggaggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacccc
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   354913 103 +    417917 gtggtggcgggcacctgtaatcccagcactttgggaggccgaggtgggaggatcacctgaggtcaggagttcgagaccagcctggccaacatggagaaacccc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             167522 103 + 149150640 gaggtggcaggtgcctgtaatcccagcactttgggaagctgaggcgggtggatcacctgaggtcaggagttcgagaccagcctgcccaacacagtgaaacccc
i rheMac8.chrX             C 0 C 0
s chlSab2.chrUn_KE147541v1 258908 103 -    811265 gtggtggcgggtgcctgtagtcccagcactttgggaggctgaggcaggtagatcacctgaggtcacaagttcgagaccagcctggccaacacagtgaaacccc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         276737 103 +    465904 gcggtggctcacgcctgtcatcccagcactttgggaggctggactgggtggatcatgtgaggtcgggagttcgagaccagcctggccaatacggtgaaacccc
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     6109 1001 +     47233 I
e panPan2.chrX             495006 1256 + 155392059 M

a score=476.000000
s hg38.chrX_KI270880v1_alt 275175 1 +    284869 g
s panTro5.chrX             460405 1 + 155549662 g
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             167625 1 + 149150640 g
i rheMac8.chrX             C 0 C 0
s chlSab2.chrUn_KE147541v1 259011 1 -    811265 a
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         276840 1 +    465904 g
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     6109 1001 +     47233 I
e gorGor5.CYUI01015925v1   355016 0 +    417917 C
e panPan2.chrX             495006 1256 + 155392059 M

a score=19758.000000
s hg38.chrX_KI270880v1_alt 275176 19 +    284869 tctctactaaaaatacaaa
s panTro5.chrX             460406 19 + 155549662 tctctactaaaaatacaaa
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             167626 19 + 149150640 tctctactaaaaatacaaa
i rheMac8.chrX             C 0 I 871
s macFas5.chrUn_KE146044     7110 19 +     47233 TTTCCACTGAAGAAAGAAA
i macFas5.chrUn_KE146044   I 1001 C 0
s chlSab2.chrUn_KE147541v1 259012 19 -    811265 tctctactaaaaatacaaa
i chlSab2.chrUn_KE147541v1 C 0 I 837
s saiBol1.JH378345         276841 19 +    465904 tcaccactaaaaatacaga
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355016  0 +    417917 C
e panPan2.chrX             495006 1256 + 155392059 M

a score=2599.000000
s hg38.chrX_KI270880v1_alt 275195 14 +    284869 cagtagccaggctt
s panTro5.chrX             460425 14 + 155549662 CAGTAgccaggctt
i panTro5.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7129 13 +     47233 -TGTggccgggcgc
i macFas5.chrUn_KE146044   C 0 C 0
s saiBol1.JH378345         276860 14 +    465904 aattatccagggat
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e chlSab2.chrUn_KE147541v1 259031 837 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             167645 871 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355016  0 +    417917 C
e panPan2.chrX             495006 1256 + 155392059 M

a score=106720.000000
s hg38.chrX_KI270880v1_alt 275209 125 +    284869 ggtggc--tcacatctgtcattccagcactttgggaggctgaCGTGgggcggatcaactgaggtcaggggttcgaga---------ccagcctggtcaacatggtgaaactccatctctattgaa-agtacaaacat
s panTro5.chrX             460439 125 + 155549662 ggtggc--tcacatctgtcattccagcactttgggaggccgacgtggggcagatcaactgagatcaggggttcgaga---------ccagcctggtcaacatggtgaaactccatctctattaaa-agtacaaacat
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             168516 124 + 149150640 ggtggc--tcacgcctgtcatcccagcactttgggaggccggggt-gggcggatcacttgaggtcaggagatcgaga---------ccggcctgggcaaggtggtgaaaccccatcttcactaaa-aatgcaaaaat
i rheMac8.chrX             I 871 C 0
s macFas5.chrUn_KE146044     7142 124 +     47233 ggtggc--tcacgcctgtcatcccagcactttgggaggccggggt-gggcggatcacttgaggtcaggagatcgaga---------ccggcctgggcaaggtggtgaaaccccatcttcactaaa-aatgcaaaaat
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 259868 124 -    811265 ggtggc--tcacgcctgtcatcccagcgctttgggaggccgaggc-gggcggatcgcttgaggtcaggagatcgaga---------ccagcctggccaaggtggtgaaaccccgtctctactgaa-aatacagaaat
i chlSab2.chrUn_KE147541v1 I 837 C 0
s saiBol1.JH378345         276874 134 +    465904 ggtgacgggggcacctgtcctcccagttactcgggaggctgaggc-aggagaatcgcttgaa--ccggggatcgcgccacggcactccggcctgggggacagagcgagactctgtctccaaaaaataaaatgaaaat
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         351037 2352 +  11138919 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355016   0 +    417917 C
e panPan2.chrX             495006 1256 + 155392059 M

a score=145135.000000
s hg38.chrX_KI270880v1_alt 275334 113 +    284869 tagcca-------------------ggcatggtggctcacgcctgtaatcccagcactttgggaggcccaggcagggggatcgcctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccc
s panTro5.chrX             460564 113 + 155549662 tagcca-------------------ggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggaggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccc
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             168640 112 + 149150640 tagctg-------------------ggcatggtggtgggcgcctgtcatcccagcactttgggagaacaaggtgggaggatcacctgaggtcaggagttcgagaccagcctgggcaaaatagtgaaacccc-
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7266 112 +     47233 tagctg-------------------ggcatggtggtgggcgcctgtcatcccagcactttgggagaacaaggtgggaggatcacctgaggtcaggagttcgagaccagcctgggcaaaatagtgaaacccc-
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 259992 112 -    811265 tagccg-------------------ggcgtggtggctcacgcctgtcatcccagcactttgggagaacaaggcgggaggatcacctgaggtcaggggttagaggccagcctgggcaacacggtgaaacccc-
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         277008 131 +    465904 aagacaaataaATAAATGAATggccggcgtggtggctcacacgtgaaatcgcaacaattcggtaagccgaggcgggtggatcccgtgaggtcacgagttcgagaccagcctggccaacatggttagacccc-
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         353389 110 +  11138919 TAgctg-------------------ggcccagtggctcacgcctgtaatcccagcactctgggaggctgaggcgggtggattgcttgagctcaggagttcaagaccagcctgagccagagggagaactc---
i otoGar3.GL873584         I 2352 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355016   0 +    417917 C
e panPan2.chrX             495006 1256 + 155392059 M

a score=254775.000000
s hg38.chrX_KI270880v1_alt 275447 150 +    284869 gtctctactaacaatacaaaaattagctgagcgtagtggtgcgcacctgtaatcccacatactcaggaggctgaggcaggataatcgcttgaacccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagcctggat
s panTro5.chrX             460677 150 + 155549662 gtctctactaacaatacaaaaattagctgggcgtagtggtgcgcacctgtaatcccacatactcaggaggctgaggcaggataatcgcttgaacccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagcctggat
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355016 150 +    417917 gtctctactaacaatacaaaaattagctgggcgtagtggtgtgcacctgtaatcccacatactcaggaggctgaggcaggataatcgcttgaacccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             168752 149 + 149150640 atcttcactaaaaatgcaaaaattagccggacgtggtggtgggcgcctgtcatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgtgatggtgccact-cactccagcctagga
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7378 149 +     47233 atcttcactaaaaatgcaaaaattagccgggcatggtggtgggcgcctgtcatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgtgatggtgccact-cactccagcctagga
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 260104 150 -    811265 accttcactaaaaatgcaaaaattagccgggcgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcagtagaatggcgtaaacccgggaagcggaggttgcagtgagctgagattgtgccactgcactccagcctgggc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s saiBol1.JH378345         277139 150 +    465904 atttctactaaaaattcaaaaatcagccgggcgtggtggcgggcgcctgtgagcccagctactcgggaggctgaggcgggagggtcgcgtgaacccgggaggcggaggctgcggtgagccgagatcgcgccacggcactccggcctgggt
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         353499 122 +  11138919 atctcta----------aaaaa--acctgtaggttgtggtgtgcacctgccatcccagctactcaggaggatgaggcaagaggatcac-tgaacccaacagtctgagcttgctgtgagctgtga---cgtcatggcac------------
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e panPan2.chrX             495006 1256 + 155392059 M

a score=439282.000000
s hg38.chrX_KI270880v1_alt 275597 299 +    284869 gacagagcaagactccatctcaaacaa--------aaagaaaagaaaTG------------------------------------------------------------------------------------------------------------------------------------------CATGGGTCTTGATGGGTGACATTTTATGT-GGAAATAATGACAACAGCT-AAAACACAAAGCAAAGCTATTTTGTTTCCCAATTTacacaaaaaaccaaaccaaacaaaacaGGTGCTGAGGTGATATTGAAAGATAAGATTGCTTAGAATATGGAGGCTAATGTTTGGAGGTGACTTTTGTAAATTGATCTTCATCCCTGGCAGTCCTTTGGTTGAAGGAGCCTGG------ATTTTAGTGTAAGATTTGGCTGGTTTGTTATAA
s panTro5.chrX             460827 299 + 155549662 gacagagcaagactccaactcaaaaaa--------aaagaaaaaaaaTG------------------------------------------------------------------------------------------------------------------------------------------CATGGGTCTTGATGGGTGACATTTTATGT-GGAAATAATGACAACAGCT-AAAACACAAAGCAAAGCTATTTTGTTTCCCAATTTACACGAAAAACCAAACAAAACAAAACAGGTGCTGGGGTGATATTGAAAGATAAGATTGCTTAGAATATGGAGGCTAATGTTTGGAGGTGACTTTTGTAAATTGATCTTCATCCCTGGCAGTCCTTTGGTTGAAGGAGCCTGG------ATTTTAGTGTAAGATTTGGCTGGTTTGTTATAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496262 298 + 155392059 GACAGAGCAAGACTCCAACTCAAAAAA--------AAAGAAAAAAATAG------------------------------------------------------------------------------------------------------------------------------------------CATGGGTCTTGATGGGTGACATTTTATGT-GGAAATAATGACAACAGCT-AAAACACAAAGCAAAGCTATTTTGTTTCCCAATTTACACGAAAAACC-AACCAAACAAAACAGGTGCTGGGGTGATATTGAAAGATAAGATTGCTTAGAATATGGAGGCTAATGTTTGGAGGTGACTTTTGTAAATTGATCTTCATCCCTGGCAGTCCTTTGGTTGAAGGAGCCTGG------ATTTTAGTGTAAGATTTGGCTGGTTTGTTATAA
i panPan2.chrX             M 1256 C 0
s gorGor5.CYUI01015925v1   355166 302 +    417917 gacagagcgagactccatctcaaaaaa--------aaaaaaagaaaaca--aTT-------------------------------------------------------------------------------------------------------------------------------------CATGGATCCTGAAGGGTGACATTTTAGGT-GGAAATAATGACAACAGCT-AAAACACAAAGCAAAGCTATTTTGTTTCCCAATTTACACGAAAAACCAAACCAAACAAAACAGGTGCTGGGGTGATATTGAAAGATAAGATTGCTTAGAATATGGAGGCTAATGTTTGGAGGTGACTTTTGTAAATTGATCTTCATCCCTGGCACTCCTTTGGTTGAAGGAGCCTGG------ATTTTAGTGTAAGATTTGGCCGGTTTGTTATAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             168901 304 + 149150640 gacagagccagactctatctcaaaaac--------aaaaacaaaaacaaaaaaC-------------------------------------------------------------------------------------------------------------------------------------TATGAGTCTTGAAGGGTGACATTTTAGGTGGGAAATAATGACAACAGCTCAAAACACAAACCAAAGCTATTTTGTTTCCCAACTTACACGAAAAACACAACCGAACAAAACAGGTGCTGGGGTGATACTGAAAGATAAGATTGCTTAGA--ACGGAGGCTGATTTTTGGAGGCGACTTTTGTAAATTGTTCTTCGTCCCTGGTGTTACTTTGGTTCAGGGAGCCTGG------ATTTTAGTGTAAAATCTGCCTCATTTGTTATAA
i rheMac8.chrX             C 0 I 2
s macFas5.chrUn_KE146044     7527 304 +     47233 gacagagccagactctatctcaaaaac--------aaaaacaaaaacaaaaaaC-------------------------------------------------------------------------------------------------------------------------------------TATGAGTCTTGAAGGGTGACATTTTAGGTGGGAAATAATGACAACAGCTCAAAACACAAACCAAAGCTATTTTGTTTCCCAACTTACACGAAAAACACAACCGAACAAAACAGGTGCTGGGGTGATACTGAAAGATAAGATTGCTTAGA--ACGGAGGCTGATTTTTGGAGGCGACTTTTGTAAATTGTTCTTCGTCCCTGGTGTTACTTTGGTTCAGGGAGCCTGG------ATTTTAGTGTAAAATCTGCCTCATTTGTTATAA
i macFas5.chrUn_KE146044   C 0 I 2
s chlSab2.chrUn_KE147541v1 260254 218 -    811265 aacagagcgagact-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cACAAACCAAAGCTATTTTGTTTCCCAACTTACACGAAAAACACAACCGAACAAAACAGGTGCTGGGGTGACATTGAAAGGTAAGATTGCTTAGA--ACGGAGGCTGATTTTTGGAGGCGATTTTTGTAAATTGTTCTTCATCTCAGGTGTCACTTTGGTTCAGGGAGCCTGG------ATTTTAGTGTAAAATCTGCCTCCTTTGTTATAA
i chlSab2.chrUn_KE147541v1 C 0 I 19
s saiBol1.JH378345         277289 229 +    465904 gagagagcgagacgccatcccaaaaaa--------caaaaacagaacaagaaaaaaaaa------------------------------------------------------------------------------AAGC------------------------GCTGG---------------TGCGTGGGTTGTGAACGGTGACGTTTTCGTT-GGAAGTAATG-CCGCAGCT-GAAACGT--CCCAAAGCCGTTTT----------------------------------------------------------------------CCCAGA------AG----------GGAGGTGACATTTGT-CACTGGTCTTCATTCCCGGCACTGGTTCGGTTGAAGGAGGC-GG------GTTTTAGTGGGAGATTTTGCTGCTTGGTTAGAA
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         353621 409 +  11138919 ---aaagtgagactgtacctcaaaaaacaacaaccaaaaaaaaaaaGGAAAAAAAGAAAAGAAAGGGTAAAAAGATGCCTTTTACAAAAATAAACTTAGCCAAGAGAGGATACAGTAAAAAATATACTGCAAGAGTGAAGCTCTTCTTCTTTTTTTTTTTTTTTGGCCGGCTCCCTTAGAAGTCACACCTGGGTGTTGAAGGTACGTATTTTAGGT-AGAAATAATGACAGTGGCT-ATAAGTCAACACAAAGACACTTTGTTTCCCAACTTA-----------------AAAAAAAATGATGTTGGGATGATATGGAAAGATAAATATTCTTGGG--ATGTGGACTCGCTTTTCAAGGTGAACTTGGCA--------------------GTTGCCTGGGTGGGAGGAGCCTGGATTTTTATTTTATCGCAGGATTCTGCTTACGTGTTGTGA
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=13388.000000
s hg38.chrX_KI270880v1_alt 275896 13 +    284869 CATGTGGAT-CCCc
s panTro5.chrX             461126 13 + 155549662 CATGTGGAT-CCCc
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496560 13 + 155392059 CATGTGGAT-CCCc
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355468 14 +    417917 CATGTGGATCCCCc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169207 11 + 149150640 TATATGGAt-cc--
i rheMac8.chrX             I 2 C 0
s macFas5.chrUn_KE146044     7833 11 +     47233 TATATGGAt-cc--
i macFas5.chrUn_KE146044   I 2 C 0
s saiBol1.JH378345         277518 11 +    465904 CATGTGGAT-TT--
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         354030 13 +  11138919 GATCTGGAT-TCCC
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e chlSab2.chrUn_KE147541v1 260472 19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=96227.000000
s hg38.chrX_KI270880v1_alt 275909 70 +    284869 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt
s panTro5.chrX             461139 68 + 155549662 tttctttctttctttc--tctttctttctttctttttcttttcctttctttctttctgtctctctctctt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496573 68 + 155392059 tttctttctttctttc--tctttctttctttctttttcttttcctttctttctgtctctctctctttctt
i panPan2.chrX             C 0 I 3
s gorGor5.CYUI01015925v1   355482 70 +    417917 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169218 69 + 149150640 -ttccttccttctttccttcctttcttccttctttctttctttctttctttctttctttctttctttctt
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7844 69 +     47233 -ttccttccttccttccttcctttcttctttctttctttctttctttctttctttctttctttctttctt
i macFas5.chrUn_KE146044   C 0 C 0
s saiBol1.JH378345         277529 67 +    465904 -TTCTCTCTTTCTTTC--TCTGTCTCCCTTCCTTCCttctcttcattctttctttctttcttatttattt
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043  0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260472 19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=3160.000000
s hg38.chrX_KI270880v1_alt 275979 3 +    284869 tct
s panTro5.chrX             461207 3 + 155549662 tct
i panTro5.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355552 3 +    417917 tct
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169287 3 + 149150640 tct
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7913 3 +     47233 tct
i macFas5.chrUn_KE146044   C 0 C 0
s saiBol1.JH378345         277596 3 +    465904 tat
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260472 19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e panPan2.chrX             496641 3 + 155392059 I

a score=910.000000
s hg38.chrX_KI270880v1_alt 275982 1 +    284869 t
s panTro5.chrX             461210 1 + 155549662 t
i panTro5.chrX             C 0 C 0
s rheMac8.chrX             169290 1 + 149150640 t
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7916 1 +     47233 t
i macFas5.chrUn_KE146044   C 0 I 2
s saiBol1.JH378345         277599 1 +    465904 t
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260472 19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355555 0 +    417917 C
e panPan2.chrX             496641 3 + 155392059 I

a score=9606.000000
s hg38.chrX_KI270880v1_alt 275983 47 +    284869 tttctttctttctttcttttcctttctttcttttcctttctttcttt-
s rheMac8.chrX             169291 31 + 149150640 ----------------tctttctttctttctttctctttctttcttt-
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7919 47 +     47233 tttctttctttctttctctttctttctttctttctctttctttcttt-
i macFas5.chrUn_KE146044   I 2 C 0
s saiBol1.JH378345         277600 47 +    465904 -ttattttatttattttattttattattttattttatttatttatttt
i saiBol1.JH378345         C 0 I 583
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043  0 +  11138919 C
e panTro5.chrX             461211  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 260472 19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355555  0 +    417917 C
e panPan2.chrX             496641  3 + 155392059 I

a score=-2053.000000
s hg38.chrX_KI270880v1_alt 276030  94 +    284869 ctctctctttcttctttccttccttctttctttctttcttttttctttctctcttttctttctttctctctctctctccctccct------------------------------------------------ccctccttc
s rheMac8.chrX             169322  23 + 149150640 ctttctct---------------ttctttctttctttc--------------------------------------------------------------------------------------------------------
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     7966 101 +     47233 ctttctct---------------ttctttctttctttc----------------tttctttctttctttcttt----------ctttctttctttctttctttctttctctctctctctctctcttccttcctccctccctc
i macFas5.chrUn_KE146044   C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043   0 +  11138919 C
e panTro5.chrX             461211   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 260472  19 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355555   0 +    417917 C
e panPan2.chrX             496641   3 + 155392059 I

a score=4860.000000
s hg38.chrX_KI270880v1_alt 276124 33 +    284869 ccttccttccttccttccatctttctttctttt--
s macFas5.chrUn_KE146044     8067 30 +     47233 ----ccttccttccttccttccttTCTCTCTTTT-
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 260491 35 -    811265 ccttccttccttccttccttccttccttccttcct
i chlSab2.chrUn_KE147541v1 I 19 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e panTro5.chrX             461211  0 + 155549662 C
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169345  0 + 149150640 C
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e gorGor5.CYUI01015925v1   355555  0 +    417917 C
e panPan2.chrX             496641  3 + 155392059 I

a score=19439.000000
s hg38.chrX_KI270880v1_alt 276157 77 +    284869 tctttctttctttctttctttctttctttctttctttctctctttctttc--tttctttctttctctctttttctttct
s rheMac8.chrX             169345 77 + 149150640 tctttctttctttctttctttctttctttctttctttctttctttctttc--tttctttctttctctctctctctctct
i rheMac8.chrX             C 0 C 0
s chlSab2.chrUn_KE147541v1 260526 79 -    811265 tctttctttctttctttctttctttctttctttctttctttctttctttctgtttctttctttctctctctctcttcct
i chlSab2.chrUn_KE147541v1 C 0 I 69
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e panTro5.chrX             461211  0 + 155549662 C
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097  0 +     47233 C
e gorGor5.CYUI01015925v1   355555  0 +    417917 C
e panPan2.chrX             496641  3 + 155392059 I

a score=820.000000
s hg38.chrX_KI270880v1_alt 276234 18 +    284869 tttctttcttctttcttt
s rheMac8.chrX             169422 18 + 149150640 cttccttcctccctccct
i rheMac8.chrX             C 0 I 49
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e panTro5.chrX             461211  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 260605 69 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097  0 +     47233 C
e gorGor5.CYUI01015925v1   355555  0 +    417917 C
e panPan2.chrX             496641  3 + 155392059 I

a score=0.000000
s hg38.chrX_KI270880v1_alt 276252 12 +    284869 ctttctttcttt
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e panTro5.chrX             461211  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 260605 69 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097  0 +     47233 C
e gorGor5.CYUI01015925v1   355555  0 +    417917 C
e panPan2.chrX             496641  3 + 155392059 I

a score=533.000000
s hg38.chrX_KI270880v1_alt 276264 7 +    284869 ctttctt
s panTro5.chrX             461211 7 + 155549662 ctttcct
i panTro5.chrX             C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260605 69 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097 0 +     47233 C
e gorGor5.CYUI01015925v1   355555 0 +    417917 C
e panPan2.chrX             496641 3 + 155392059 I

a score=5953.000000
s hg38.chrX_KI270880v1_alt 276271 23 +    284869 tctttctttctttctctcttttc
s panTro5.chrX             461218 23 + 155549662 tctttctttctttctttcttttc
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496644 23 + 155392059 tccttctttctttctttcttttc
i panPan2.chrX             I 3 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260605 69 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097  0 +     47233 C
e gorGor5.CYUI01015925v1   355555  0 +    417917 C

a score=2784.000000
s hg38.chrX_KI270880v1_alt 276294 5 +    284869 tttct
s panTro5.chrX             461241 5 + 155549662 tttct
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496667 5 + 155392059 tttct
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355555 5 +    417917 ttTCT
i gorGor5.CYUI01015925v1   C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 260605 69 -    811265 I
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097 0 +     47233 C

a score=2386.000000
s hg38.chrX_KI270880v1_alt 276299 3 +    284869 tcc
s panTro5.chrX             461246 3 + 155549662 tCC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496672 3 + 155392059 tcc
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355560 3 +    417917 TCC
i gorGor5.CYUI01015925v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 260674 3 -    811265 tct
i chlSab2.chrUn_KE147541v1 I 69 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043 0 +  11138919 C
e cerAty1.NW_012001098v1   319299 2676 -   1025902 I
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097 0 +     47233 C

a score=1365.000000
s hg38.chrX_KI270880v1_alt 276302 1 +    284869 t
s panTro5.chrX             461249 1 + 155549662 T
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496675 1 + 155392059 t
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355563 1 +    417917 T
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   321975 1 -   1025902 t
i cerAty1.NW_012001098v1   I 2676 C 0
s chlSab2.chrUn_KE147541v1 260677 1 -    811265 t
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043 0 +  11138919 C
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e rheMac8.chrX             169440 49 + 149150640 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097 0 +     47233 C

a score=11655.000000
s hg38.chrX_KI270880v1_alt 276303 6 +    284869 tctttT
s panTro5.chrX             461250 6 + 155549662 TCTTTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496676 6 + 155392059 tctttT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355564 6 +    417917 TCTTTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169489 6 + 149150640 TCTTTT
i rheMac8.chrX             I 49 C 0
s cerAty1.NW_012001098v1   321976 6 -   1025902 tctttT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 260678 6 -    811265 tcttTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043 0 +  11138919 C
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I
e macFas5.chrUn_KE146044     8097 0 +     47233 C

a score=104105.000000
s hg38.chrX_KI270880v1_alt 276309 50 +    284869 Taagtgaaagcaagttttttaagaaagtgaagtaataaaagaatggctac
s panTro5.chrX             461256 50 + 155549662 Taagtgaaagtaagttttttaagaaagtgaagtaataaaagaatggctac
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496682 50 + 155392059 Taagtgaaagtaagttttttaagaaagtgaagtaataaaagaatggctac
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355570 50 +    417917 Taagtgaaagcaagttttttaagaaagtgaagtaataaaagaatggctac
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169495 50 + 149150640 Taagtcaaagcaagtttattaacaaactgaaggaataaaacaatgactac
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     8097 50 +     47233 Taagtcaaagcaagtttattaacaaactgaaggaataaaacaatgactac
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   321982 50 -   1025902 Taagtcaaagtaaatttattaacaaactgaagaaataaaacaatggctac
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 260684 50 -    811265 Taagtcaaagcaagtttattaacaaactgaaggaatgaaacaatggctac
i chlSab2.chrUn_KE147541v1 C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e colAng1.NW_012115411v1   442996 9184 +   1230721 I
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=116841.000000
s hg38.chrX_KI270880v1_alt 276359 45 +    284869 tcca--gaggcagagtac-cccttagggctgctggttggctatcttta
s panTro5.chrX             461306 45 + 155549662 tcca--gaggcagagtac-cccttagggctgctggttggctatcttta
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496732 45 + 155392059 tcca--gaggcagagtac-cccttagggctgctggttggctatcttta
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355620 44 +    417917 tcca--gaggcagagta--cccttagggctgctggtcggctgtcttta
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169545 45 + 149150640 tccc--taggcagagtag-ccctgagggctgctgattggctattttta
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     8147 45 +     47233 tccc--taggcagagtag-ccctgagggctgctgatcggctattttta
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   322032 45 -   1025902 tccc--taggcagagtag-gcctgagggctgctgatcggctattttta
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 260734 48 -    811265 tccccgtaggcagagtagcccctgagggctgctgatcagctattttta
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   452180 45 +   1230721 tcca--taggcagagtag-ccctgagggctgctggttggctattttta
i colAng1.NW_012115411v1   I 9184 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e saiBol1.JH378345         277647 583 +    465904 I
e otoGar3.GL873584         354043  0 +  11138919 C
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=566600.000000
s hg38.chrX_KI270880v1_alt 276404 200 +    284869 tatctgctcctatttatttatttatttattggagacagagtctcgttctgtcgcccaggctggagtgcagtggtgcaatcttggctca---ctgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctaggattatagtcatgagcgaccacaccaagctaatttttttttttttttt---tgta
s panTro5.chrX             461351 199 + 155549662 tATCTGCTCCTAtttatttatttatttattggagacagagtctcgttctgtcgcccaggctggagtgcagtggtgcaatcttggctcg---ctgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattatagtcatgagcgaccacaccaagctaaattttttttttttttt----gta
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496777 197 + 155392059 tATCTCCTCCTAtttatttatttatttattggagacagagtctcgttctgtcgcccaggctggagtgcagtggtgcaatcttggctca---ctgcaacctctgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattatagtcatgagcgaccacaccaagctaaattttttttttttt------gta
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355664 203 +    417917 tATCTGCTCCTAtttatttatttatttattggagacagagtctcgttctgtcgcccaggctggagtgcagtggtgcaatcttggctca---ctgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattatagtcatgagccaccacaccaagctaaatttttttttcttttttttttta
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169590 202 + 149150640 tgTCTGATCCTATTCAtttatttatttattggagacagagtctcgttctgtggcccaggctggagtgcagtggcgcgatctcggctcactgctgcaacctcagccttccgggttcaagccattctcctgcctcagcctcttgagtagctgggattacaggcacctgccaccacgtccggctaattttactttttatttt----tta
i rheMac8.chrX             C 0 I 10
s macFas5.chrUn_KE146044     8192 202 +     47233 tgTCTGATCCTATTCAtttatttatttattggagacagagtctcgttctgtggcccaggctggagtgcagtggcgcgatctcggctcactgctgcaacctcagccttccgggttcaagccattctcctgcctcagcctcttgagtagctgggattacaggcacctgccaccacgcccggctaattttactttttatttt----tta
i macFas5.chrUn_KE146044   C 0 I 10
s cerAty1.NW_012001098v1   322077 202 -   1025902 tgTCTGATCCTATTCAtttatttatttattggagacagagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgctgcaacctctgccttctgggttcaagcaattctcctgcctcagcctcttgagtagctgggattacaggcacctgccaccacgtctggctaatttaactttttatttt----tta
i cerAty1.NW_012001098v1   C 0 I 9
s chlSab2.chrUn_KE147541v1 260782 198 -    811265 tgTCTGATCCTATTCAtttatttatttattggagacagagtctccctctgttgcccaggccggagtgcagtggtgtgatctcggctca---ctgcaacctctgccttccgggttcaagcgattctcctgcctcagcctcctgagtagctggcattacaggcacctgccaccacacccagctaattt-attttttatttt----tta
i chlSab2.chrUn_KE147541v1 C 0 I 9
s colAng1.NW_012115411v1   452225 196 +   1230721 tgTCTCATCCTATTCAtttatctatttattggagacagagtcttgttctgttgcccaggctggagtgcagtggtgcgatctcagctca---ctgcaatatctgccttccgggttcaggcgattctcctgcctcagcctcctgagtcgctgggattacaggcacctgccaccaagcccagctaattt---tttttttttt----cta
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         278230 155 +    465904 taattgcttttcttt-tttctacatttagtagacatggggtctcactatgttggccaggctgg----------------------------------tctcaacctcttgactccaggggatcctcctgcctcggcctcccaaagtgctggggtgac---catgaccgaccgcacccTGGTCATTt---------tttt----gta
i saiBol1.JH378345         I 583 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043   0 +  11138919 C
e macNem1.NW_012017243v1   456974 3977 +  25972781 I

a score=506964.000000
s hg38.chrX_KI270880v1_alt 276604 131 +    284869 tttttagtagagaca-----------gggtttcaccatgttggccatgctggtctcgaactgctagcctcaggtgacccgcccgcctcggcctcccaacgtgctgggatgacaggtttgagccaccgcccccggtcCATCCT
s panTro5.chrX             461550 131 + 155549662 tttttagtagagaca-----------gggtttcaccatgttggccatgctggtctcgaactgctagcctcaggtgacccgcccgcctcggcctcccaacgtgctgggatgacaggcttgagccaccatccccggtcCATCCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             496974 131 + 155392059 tttttagtagagaca-----------gggtttcaccatgttggccatgctggtctcgaactgctagcctcaggtgacccgcccgcctcggcctcccaacgtgctgggatgacaggcttgagccaccatccccggtcCATCCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355867 131 +    417917 tttttagtagagaca-----------gggtttcaccatgttggccatgctggtctcgaactgctagcctcaggtgacccgcccgcctcggcctcccaacgtgctgggatgacaggtttgagccactgaccccggtcCATCCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169802 131 + 149150640 tttttagtagagaca-----------gggtttcactatgttggccaggctggtctcgaacttctaacctcagatgacccgcccgccttggcctcccaaagtgctgggatgacaggcttgagccactgcccccagccCATCCT
i rheMac8.chrX             I 10 C 0
s macFas5.chrUn_KE146044     8404 131 +     47233 tttttagtagagaca-----------gggtttcactatgttggccaggctggtctcgaacttctaacctcagatgacccgcccgccttggcctcccaaagtgctgggatgacaggcttgagccactgcccccagccCATCCT
i macFas5.chrUn_KE146044   I 10 C 0
s macNem1.NW_012017243v1   460951 128 +  25972781 tttttagtagagaca------------ggtttcactatgttggccaggctggtctcgaactt-taacctcagatgacccgcccgccttggcctcccaaagtggtgggatgacaggcttgagccact-tgcccagccCATCCT
i macNem1.NW_012017243v1   I 3977 C 0
s cerAty1.NW_012001098v1   322288 131 -   1025902 tttttagtagacacc-----------gggtttcactatgttggccaggctggtctcgaacttctaacctcagatgacccgcccgccttggcctcccaaagtgctgggatgacaggcgtgagccaccgcccccagccCCTCCT
i cerAty1.NW_012001098v1   I 9 C 0
s chlSab2.chrUn_KE147541v1 260989 111 -    811265 tttttagtagagaca-----------gggtttcactatgttggccaggctggtctcgaacagctaccctcagatgac--------------------gtatactgggatgacaggcttgagccaccgcccccagccCATCCT
i chlSab2.chrUn_KE147541v1 I 9 C 0
s colAng1.NW_012115411v1   452421 113 +   1230721 -----agtagagaca-----------gggtttcactatgttggctaggctggtctcgaactgctagcctcagatgacccgcccgccttggcctcccagcgt-------------gcttgagccaccgcccccagccCATCCT
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         278385 134 +    465904 tttttagttgagacgggggcgggggcgggtgtcaccatgttgtccaggctggtctcgaactcgtgacctcaggtgatccgcccgcctcggcctcccaaggtgctggggtgacaggcgtgag--------ccCGTCCCATCCC
i saiBol1.JH378345         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I
e otoGar3.GL873584         354043   0 +  11138919 C

a score=6600.000000
s hg38.chrX_KI270880v1_alt 276735 1 +    284869 C
s panTro5.chrX             461681 1 + 155549662 C
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497105 1 + 155392059 C
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355998 1 +    417917 C
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169933 1 + 149150640 C
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     8535 1 +     47233 C
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   461079 1 +  25972781 C
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   322419 1 -   1025902 C
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 261100 1 -    811265 C
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   452534 1 +   1230721 C
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         278519 1 +    465904 C
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         354043 1 +  11138919 C
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             389187 3432 + 123869142 I
e manLeu1.NW_012108508v1   324880 4938 -    350446 I

a score=610273.000000
s hg38.chrX_KI270880v1_alt 276736 145 +    284869 TTTATT-TTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CAGGGGCTGAGAAAGCATGAAATACAGAGAATTTCTCTCCTCTTTCAACCAGAA--AAGTTGTCTCATGTC-----TTTGGAGGTGGT-AAGACCAGAG
s panTro5.chrX             461682 145 + 155549662 TTTGTT-TTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTGGTGGCTCTT-CGGGGGCTGAGAAAGCATGAAATACAGAGAATTTCTCTCCTCTTTCACCCAGAA--AAGTTGTCTCATGTC-----TTTGGAGGTGGT-AAGACCAGAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497106 146 + 155392059 TTTGTT-TTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTTCCGGGGGTTGAGAAAGCATGAAATACAGAGAATTTCTCTCCTCTTTCACCCAGAA--AAGTTGTCTCATGTC-----TTTGGAGGTGGT-AAGACCAGAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   355999 146 +    417917 TTTATT-TTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTTCCGGGGGTTGAGAAAGCATGAAATACAGAGAATTTCTCTCCTCTTTCACCCAGAA--AAGTTGTCTCATGTC-----TTTGGAGGTGGT-AAGACCAGAG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             169934 146 + 149150640 TTTATTATTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CAGGGACTGAGAACCCATGAAATCAAGAGAATTTCTCTCCTCTTTCACCCAGGA--AAGTTATCCCATGTC-----TTTGGAGGAGGT-AAGACCGGAG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     8536 146 +     47233 TTTATTATTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CAGGGACTGAGAACCCATGAAATCAATAGAATTTCTCTCCTCTTTCACCCAGGA--AAGTTATCCCATGTC-----TTTGGAGGAGGT-AAGACCGGAG
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   461080 140 +  25972781 TTTATTATTTTAAATTCTATTTGTATTCTTGATCTT-CCAGTTTTAGTGGCTCTT-CAGGGACTGAGAACCCATGAAATCAA-AGAATT--TCTCCTCTTTCACCCA-GA--AAGTTATCCCATGTC-----TTT-GAGAAGGT-AAGACCGGAG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   322420 146 -   1025902 TTTATTACTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CGGAGACTCAGAACCCATGAAATCAAGAGAATTTCTCTCCTCTTTCACCCAGGA--AAGTTATTTCATGTC-----TTTGGAGGAGGT-AAGACCGGAG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 261101 146 -    811265 TTTATTATTTTCAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CGGGGACTCAGAACCCATGAAATCAAGAGAATTTCTCTCGTCTTTCACCCAGGA--AAGTTGTCCCACGTC-----TTTGGAGGCGGT-AAGACTGGAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s colAng1.NW_012115411v1   452535 146 +   1230721 TTTATTATTTTAAATTCTATTTGTATTCTTGATCTTCCCAGTTTTAGTGGCTCTT-CAGGGACTGAGAACCCATGAAATAAAGAGAATTTCTCTCCTCTTTCACCCAGGA--AAGTTGCGTCATGTC-----TTTGGCGGACGT-AAGACCAGAG
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         278520 144 +    465904 GTTCTT-TCTTCAATTACATTTCTATGCTTGACCTTCCCCGTTTGAGCGGCTCT--CGGGGGCTGAGAAGGCGTCAAATCAAGAGGATTTCGCTCCTCCTTCCCCCGGCA--AAGCTCTCGCAGGTC-----TCGGGAGGCGGTCGAGGCCGAC-
i saiBol1.JH378345         C 0 C 0
s otoGar3.GL873584         354044 143 +  11138919 TCTACT-CTTTGAATTCTGTTTGTTTTCTGGGTCTCCTGGGTTTGGGTGCCTTT--CTGGGGATGATACACCCAGAAACAGGGAGG-TGTTTATCCTTTTTCATTCGGAG--AGGTTGTTTTCTGCAGGAGGGGTGGAGGGGGA-CAGGC-----
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             392619 143 + 123869142 TTTATT-CTCCGAATCCTATTTGTATTCTGGATCTCCCCGCTTCCAGTTTCTTTT-CAGGG-CTGATGAGCGATGAAAGACGGAGGATTTCTGTCCTCTTTTGCTGAAAAACAAGTCGGCCCAGAAT-----TTCCTGTGTGGG-AGACGCA---
i canFam3.chrX             I 3432 C 0
e manLeu1.NW_012108508v1   324880 4938 -    350446 I

a score=916598.000000
s hg38.chrX_KI270880v1_alt 276881 189 +    284869 ATATCTTTCTTGCAGG------------AGGAAGATGA--TTTCAAGAACAGAGAAATTGAGATGATTTT-CCCGAGACAGGCAGTTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGCGAGGCCA--------AGATGAAGTTGCTTCATTTTCTTAAGAGAGAAT-GACCGGAATGTTCCGGAAAA-CCAAAACGTC-CAAGCTTTTGCAGGA
s panTro5.chrX             461827 189 + 155549662 ATATCTTTCTTGCAGG------------AGGAAGATGG--TTTCAAGAACAGAGAAATTGAGATGATTTT-CCCGAGACAGGCAGTTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGCGAGGGCA--------AGATGAAGTTGCTTCATTTTCTTAAGAGAGAAT-GACCGGAATGTTCCGGAAAA-CCAAAACGTC-CAAGCTTTTGCAGGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497252 189 + 155392059 ATATCTTTCTTGCAGG------------AGGAAGATGG--TTTCAAGAACAGAGAAATTGAGATGATTTT-CCCGAGACAGGCAGTTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGCGAGGGCA--------AGATGAAGTTGCTTCATTTTCTTAAGAGAGAAT-GACCGGAATGTTCCGGAAAA-CCAAAACGTC-CAAGCTTTTGCAGGA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356145 189 +    417917 ATATCTTTCTTGCAGG------------AGGAAGATGA--TTTCAAGAACAGAGAAACTGAGATGATTTT-CCCGAGACAGGCAGCTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGCGAGGCCA--------AGATGAAGTTGCTTCATTTTCTTAAGAGAGAAT-GACTGGAATGTTCCAGAAAA-CCGAAACGTC-CAAGCTTTTGCAGGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             170080 190 + 149150640 GTATCTGTCTTGCAGG------------AGGCAGAGGA--TTCCAAAAACAGAGACATTGCAATGATTTT-CCCGAGATGGGCAATTGTT-CCTTTCCTCCTCTCAGACACCTGTCCCGTGAGGCGA--------AGATGAAGCTGCTTCATTTTCTTCAGAGAGAAG-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CCAACTTTTCCAGGA
i rheMac8.chrX             C 0 I 3
s macFas5.chrUn_KE146044     8682 190 +     47233 ATATCTGTCTTGCAGG------------AGGCAGAGGA--TTCCAAAAACAGAAACATTGCAATGATTTT-CCCGAGATGGGCAATTGTT-CCTTTCCTCCTCTCAGACACCTGTCCCGTGAGGCGA--------AGATGAAGCTGCTTCATTTTCTTCAGGGAGAAG-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CCAACTTTTCCAGGA
i macFas5.chrUn_KE146044   C 0 I 3
s macNem1.NW_012017243v1   461220 189 +  25972781 ATATCTGTCTTGCAGG------------AGGCAGAGGA--TTCCAAAAACAG-AACATTGCAATGATTTT--CCGAGATGGTCAATTGTTGCCTTTCCTCCTCTCAGACACCTGTCCCGTGAGGCGA--------AGATGAAGCTGCTTCATTTTCTTCAGAGAGAAG-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CAAACTTTTCCAGGA
i macNem1.NW_012017243v1   C 0 I 3
s cerAty1.NW_012001098v1   322566 190 -   1025902 ACATCTGTCTTGCAGG------------AGGGAGAGGA--TTCCAAAAACAGAGAGATTGAAATGATTTT-CCCGAGACGGGCAATTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGTGAGGCGA--------AGATGAAGCTGCTTCATTTTCTTCAGAGAGAAG-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CAAACTTTTCCAGGA
i cerAty1.NW_012001098v1   C 0 I 4
s chlSab2.chrUn_KE147541v1 261247 190 -    811265 ATATCTGTCTTGCAGG------------AGGGAGAGGA--TTCCAAAAACAGTGACACTGAAATGATTTT-CCCGAGACGGGCAATTGTT-TCTTTCCTCCTCTCAGACACCTGTCCCGCGAGGCGA--------AGATGAAGCTGCTTCATTTTCTTCGGAGAGAAT-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CAACCTTTTCCAGGA
i chlSab2.chrUn_KE147541v1 C 0 I 29
s manLeu1.NW_012108508v1   329818 190 -    350446 ATATCTGTCTTGCAGG------------AGGGAGAGGA--TTCCAAAAACAGAGAGATTGAAATGATTTT-CCCGAGACGGGCAATTGTT-CCTTTCCTCCTCTCAGACACCTGTCCCGTGAGGCGA--------AGCTGAAGCTGCTTCATTTTCTTCGGAGAGAAG-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CAAACTTTTCCAGGA
i manLeu1.NW_012108508v1   I 4938 I 4
s colAng1.NW_012115411v1   452681 193 +   1230721 ATATCTTTCTTGCAGG------------AGGGAGAGGATTTTCCAAGAACAGAGAAATTGAAATGATTTTTCCCTAGAGGGGCAATTGTT-TATTTCCTCCTCTCAGACGCCTGTCCCGCCAGGCAA--------AGATGAAGCTGCTTCATTTTCTCCCGAGAGAAT-GACCGGAATGTTCCGGAAAAGCCAAAACGTC-CAAATTTTTCCAGGA
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         278664 186 +    465904 ATGTCTTTCTTCCTGG------------GGGACGAGGA-TTTCCGGGGTCAGAGACACTGGGACGCTCTTCCCCGGGGGGGGCGGCTGTG-AGTGTCCT--GCTCGGACGCCCGTCCCGTCAGGCAA--------ACATGAAGGGTCTTCGTTGTCTT--GAGACAAA-GGCCTGGCTGTCCCCTCAC--CCCACATGGA-CAGGCTTTTGCAGGG
i saiBol1.JH378345         C 0 I 4
s otoGar3.GL873584         354187 201 +  11138919 AATTCTTTTTGGAAGGACAAGGGAGGCTAGGATGCTGA--GGCTGAGGACACAGCAATTGTGATGATTTTTCCTGAGAGCTGCAATTGCT-GTTAGACTCCACGCAGAATTCTGCCCCACGAGGCAA--------AGATTAAGTTGCTTCATTTTCTTCCGAGAGAAACTACCTGAATGCTCCTAGA---GCTAAAGGTA-TGAGGGTTTTTTGGT
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             392762 160 + 123869142 -------CCTTGCAGT------------GGCCGGAGCC--T--------CAGAG---CTGCGATG----T-CCC-----------------GTTTTCCTGCCCTCGGAATCCTGCCCCCACAAAAGACCACTGTTAATTTAAGTCGTTTTGTGTTCTCCTGCGAGAAC-TAGCTTGCCGCTCCCGAAGC-CAAAAACATCACCAACTTTTGGGGGA
i canFam3.chrX             C 0 C 0

a score=45660.000000
s hg38.chrX_KI270880v1_alt 277070 21 +    284869 TGGAAGGAGTGGATCTATAGC
s panTro5.chrX             462016 21 + 155549662 TGGAAGGAGTGGATCTACAGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497441 21 + 155392059 TGGAAGGAGTGGATCTACAGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356334 21 +    417917 TGGAAGGAGTGGATCTATAGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             170273 21 + 149150640 TGGGGGGAGCAGATCCATAGC
i rheMac8.chrX             I 3 I 5
s macFas5.chrUn_KE146044     8875 21 +     47233 TGGGGGGAGCAGATCCATAGC
i macFas5.chrUn_KE146044   I 3 I 5
s macNem1.NW_012017243v1   461412 21 +  25972781 TGGGGGGAGCAGATCCATAGC
i macNem1.NW_012017243v1   I 3 I 5
s cerAty1.NW_012001098v1   322760 21 -   1025902 GGGGGGGAGCAGATCCATAGC
i cerAty1.NW_012001098v1   I 4 I 5
s manLeu1.NW_012108508v1   330012 21 -    350446 GGGGGGGAGCAGATCCATAGC
i manLeu1.NW_012108508v1   I 4 I 5
s saiBol1.JH378345         278854 18 +    465904 AGGGGAGACGACGTCTCT---
i saiBol1.JH378345         I 4 C 0
s otoGar3.GL873584         354388 21 +  11138919 GGGGGGGGGATGATTTCTCCC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             392922 11 + 123869142 ------AGTTTGCTCCC----
i canFam3.chrX             C 0 C 0
e chlSab2.chrUn_KE147541v1 261437 29 -    811265 I
e colAng1.NW_012115411v1   452874  0 +   1230721 C

a score=2004729.000000
s hg38.chrX_KI270880v1_alt 277091 427 +    284869 AATTGAATTGAACACTTGTGTCCCTGTGTCTCCCTTGCTGCCCCCCAAACCTGAGAG--CCCAT------------------------------------------TTTCAGCTTCTCCAGTGACCCAGTTGTC--CAAGCGGAAACTAGTTAATCACCCTCAGTGGA----CCTGATATTCCCC-GGAAATTATGGCTCGTGG---AGATCTCATCGGAATTGTAAACTCATGCAGC--CAGCCACATCTGCAAGTCCC---AGGGG---AATACAGGTC----------AAAAAACGTACCGGAATTACAGAAAAATCGTGTTGTCATCTCTGCACCGTACAAGGACAGAAACGACCTGTTTCCAAGAA-----TGACATTATATAGCATCCCTG---------------------CCTTTTCGTTGACGGGGGAGACTGTATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAAAATGACAAAATTAAAAGGAACGAAGGTGTATAGAAAGG--
s panTro5.chrX             462037 429 + 155549662 AATTGAATTGAACACTTGAGTCCCTGTGTCTCCCTTGCTGTCCCCCAAACCTGAGAGAGCCCAT------------------------------------------TTTCAGCTTCTCCAGTGACCCAGTTGTC--CAAGCGGAAACTAGTTAATCACCCTCAGTGGA----CCTGATATTCCCC-GGAAATTATGGCTCGTGG---AGATCTCATCGGAATTGTAAACTCATGCAGC--CAGCCACATCTGCAAGTCCC---AGGGG---CATACAGGTC----------AAAAAACGTACCGGAATTACAGAAAAATCGTGTTGTCATCTCTGCACCGTACAAGGACAGAAACGACCTGATTCCAAGAA-----TGACATTATATAGCATCCCTC---------------------CCTTTTCGTTGACGGGGGAGACTGTATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAAAATGACAAAATTAAAAGGAACCAAGGTGTATAGAAGGG--
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497462 429 + 155392059 AATTGAATTGAACACTTGAGTCCCTGTGTCTCCCTTGCTGCCCCCCAAACCTGAGAGAGCCCAT------------------------------------------TTTCAGCTTCTCCAGTGACCCAGTTGTC--CAAGCGGAAACTAGTTAATCACCCTCAGTGGA----CCTGATATTCCCC-GGAAATTATGGCTCGTGG---AGATCTCATCGGAATTGTAAACCCATGCAGC--CAGCCACATCTGCAAGTCCC---AGGGG---AATACAGGTC----------AAAAAACGTACCGGAATTACATAAACATCGTGTTGTCATCTCTGCACCGTACAAGGACAGAAACGACCTGATTCCAAGAA-----TGACATTATATAGCATCCCTC---------------------CCTTTTCGTTGACGGGGGAGACTGTATTATCCTC-TAAAAGGTGCCAC-AAAGAATATTCAGAAAGGGTAAAATGACAAAATTAAAAGGAACGAAGGTGTATAGAAGGG--
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356355 428 +    417917 AATTGAATTGAACACTTGAGTTCCTGTGTCTCCCTTGCTGCCCCCCAAACCTGAGAG--CCCAT------------------------------------------TTTCAGCTTCTCCAGTGACCCAGTTGTC--CAAGTGGAAACTAGTCAATCACCCTCAGTGGA----CCTGATATTCCCC-AGAAATTATGGCTCGTGG---AGATCTCATCGGAATTGTAAACTCATGCAGC--CAGCCACATCTGCAAGTCCC---AGGGG---AAT-CAGGTC--------AAAAAAAACGTACCGGAATTACAGAAAAATCGTGTTGTCATCTCTGCACCGTACAAGGACAGAAACGACCTGTTTCCAAGAA-----TGACATTATATAGCATCCCTC---------------------CCTTTTCGTTGACAGGGGAGACTGTATTATCCTC-TAAAAGGTGCCAC-GAAGACTATTCAGAAAGGGTAAAATGACAAAATTAAAAGGAATGAAGGTGTATAGAAGGG--
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             170299 429 + 149150640 AACTGAAGTGAACACTTGTGTCCCTGTGTCTCCTTTGCCGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------GTGAAGCTTCTCCAGTGACCTCATTGTC-AAAAGCAAAAACTAGTGAATCGCCCTCAGTGGA----CCTCATATGCTCT-GGGAACTATGGCTTATGG---AGCTCTCATCGGAATTGTAAACTCATCTAGCCACAGCCAAATCCACAAGTCCC--GGGGGG---ACTACAGGTC---------AAAAAAACACAGCGGAATTACAGAAAAATCGTATTGTCATCTCCGCACCGTACGAGGACAGACATGGCCTGTTTCCAGGAA-----TGACATTATACAGCACCCCCC--------------------TCCTTTCTGTTGAGGGGGGAGAC--TATTATCCTC-TACAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAGAATGACCAAATTAAAAGGAACGAAGGTGTATAGAAAGG--
i rheMac8.chrX             I 5 I 22
s macFas5.chrUn_KE146044     8901 429 +     47233 AACTGAAGTGAACACTTGTGTCCTTGTGTCTCCTTTGCCGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------GTGAAGCTTCTCCAGTGACCTCATTGCC-AAAAGCAAAAACTAGTGAATCGCCCTCAGTGGA----CCTCATGTGCTCT-GGGAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGCCACAGCCAAATCCACAAGTCCC--GGGGGG---ACTACAGGTC---------AAAAAAACACAGCGGAATTACAGAAAAATCGTATTGTCATCTCTGCACCGTACGAGGACAGACACGGCCTGTTTCCAGGAA-----TGACATTATACAGCACCCCCC--------------------TCCTTTCTGTTGAGGGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAGAATGACCAAATTAAAAGGAACGAAGGTGTATAGAAAGG--
i macFas5.chrUn_KE146044   I 5 I 1
s macNem1.NW_012017243v1   461438 430 +  25972781 AACTGAAGTGAACACTTGTGTCCTTGTGTCTCCTTTGCCGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------GTGAAGCTTCTCCAGTGACCTCATTGCC-AAAAGCAAAAACTAGTTAATCGCCCTCAGTGGA----CCTCATATGCTCT-GGAAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGCCACAGCCAAATCCACAAGTCCC--GGGGGG---ACTACAGGTC--------AAAAAAAACACAGCGGAATTACAGAAAAATCGTATTGTCATCTCTGCACCGTACGAGGACAGACAAGGCCTGTTTCCAGGAA-----TGACATCATACAGCACCCCCC--------------------TCCTTTCTGTTGAGGGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAGAATGACCAAATTAAAAGGAACGAAGGTGTATAGAAAGG--
i macNem1.NW_012017243v1   I 5 I 1
s cerAty1.NW_012001098v1   322786 431 -   1025902 AATTGAACTGAACACTTGTGTCCCTGTGTCTCCTTTGCTGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------GTGAAGCTTCTCCAGTGACCTCATTGCC-AAAAGCAAAAACTGGTTAATCGCCCTCAGTGGA----CCTCATATGCTCT-GGGAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGCCACAGACAAATGCACAAGTCCCCGGGGGGG---AATACAGGTC---------AAAAAAACACAGCGGAATTATAGAAAAATCGTGTTGTCATCTCTGCACCCTACGAGGACAGACACGGCCTGTTTCCAGGAA-----TGACATTATACAGCACCCCCC--------------------TCCTTTCTGTTGAGGGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAAGGTAAAATGACCAAATTAAAAGGAACGAAGGTGTATAGAAAGG--
i cerAty1.NW_012001098v1   I 5 I 22
s chlSab2.chrUn_KE147541v1 261466 429 -    811265 AATTGAACTGAACACTTGTGTCCCTGCGTCTCCTTTGCCGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------CTGAAGCTTCTCCAGTGACCTCATTGCC-AAAAGCAAAAACTGGTTAATCGCCCTCAGGGGA----CCTCATATGCTCT-GGGAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGCCACAGCCCAATCCACAAGTCCC--GGGGGG---AATACAGGTC---------AAAAAAACACACCGGAATTACAGAAAAATCGTGTTGTCATCTCTGCACCGTACGAGGCCAGACACGGTCTGTTTCCAGGAA-----TGACATTATACAGCACCCCCC--------------------TCTTTTCTGTTGAAGGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTAGAATGACCAAATTAAAAAGAATGAAGGCGTATAGAAAGA--
i chlSab2.chrUn_KE147541v1 I 29 I 1
s manLeu1.NW_012108508v1   330038 431 -    350446 AATTGAACTGAACACTTGTGTCCCTGCGTCTCCTCTGCTGCCCCC--ACCCTGGGAG--CCCAT------------------------------------------GTGAAGCTTCTCCAGTGACCTCATTGCC-AAAAGCAAAAACTAGTGAATCGCCCTCAGTGGA----CCTCATATGCTCT-GGGAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGCCACAGCCAAATGCACAAGTCCCCGGGGGGG---AATACAGGTC---------AAAAAAACACAGCGGAATTATAGAAAAATCGTGTTGTCATCTCTGCACCCTACGAGGACAGACATGGCCTGTTTCCAGGAA-----TGACATTATACAGCACCCCCC--------------------TCCTTTCTGTTGAGGGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAAGGTAAAATGACCAAATTAAAAGGAACGAAGCTGTATAGAAAGG--
i manLeu1.NW_012108508v1   I 5 I 1
s colAng1.NW_012115411v1   452874 376 +   1230721 --------------------------------------------------------------------------------------------------------------AGCTTCCCCAGTGACCTCATTGCC---AGGCAAAAACTAGTTAATCGCCCTCAGTGGAACTCACTCATAGTCTCC-GGGAATTATGGCTTATGG---AGATCTCATCGGAATTGTAAACTCATCTAGT--CAGCCAAATCCGCAACTCCC--GGGGGGGACAATACAGGTCAAAAAAAAAAAAAAAACATACCAGAATTACAGAAAAATGGTGTTGTCATCTCTGCACTGTACAAGGACAGACACGGCCTGTTTCCGGGAA-----TGACATTATACAGCACCCCCC--------------------TCCTTTTTGTTGA-GGGGGAGAC--TATTATCCTC-TAAAAGGTGCCAC-GAAGAATATTCAGAAAGGGTCAAATGACCAAATTAAAAGGAACGAAGGCGTATAGAAAGG--
i colAng1.NW_012115411v1   C 0 I 2
s saiBol1.JH378345         278872 331 +    465904 ----------TCCAGTGCAGCGTCTGCGTCTCTGTTACCGCCCTG--ACCCCAGAAC--CCCGT-----------------------------------------CTTTCAGCGTCTGCAGCGACCCCGTGGCA--GGAGAGAAACCCCATGAATC-CCCCGAGCGGG----CCTGACGCTCTCC-CGGAATCACGTCTCGCCGCTCGCATGTCGTCGGAACGGGAACGTCATCGAGG--CCACCAAACGGACACGTCCC---AGGAG---GACACGGGTC-------------------------------------------------------ACCACGCGTGGAGGG---------GGTCACGGGAA----------------------------------------------------------AAGGGGAGGGC-GTGTCACCCTG-TGAAAGGTGCCAC-GGAGCACACGCAGGAAGGGTGAAAGGAGGTAATGATGGGGCGAGGAGGCGGAGCGGGAGG--
i saiBol1.JH378345         C 0 I 1
s otoGar3.GL873584         354409 441 +  11138919 -----AATCCAACACCTGTCTCTC-----CCTCCTCACTGCACTCCCACCCTCA-AG--CACAT------------------------------------------TTTAAGTTTCACCGCTGACCCAATTGCT--GGAATGAAAACTAGTTATCTGTCCTCGGTGGA----CATGCTATTCCCT-GGGAATTATGTCTCATTG---AGATTTCATCAGAATTGTAAACTCATCTAGC--TGGCCAGATCGGCAACTCCC---AGGAG---GACACAGGTC--------AAGAAAAATACTGCAG-ATTACAGAAAAACTCTGTTGTCATTTTGCCATGATACAAGCATGGGAAGGGCTGGTTTCCAAGAATTCCTTGACATTAAACAACTctttcttccttccttccttccttccttccttccttTCGATAGAAGGTG---TATAATCCCCATAAAGCATGCTATAGAAAAATATTCAGAAAGAGTAAAATAATAAAATTAAAAAGAGCCAGGGCATATCGAAGC---
i otoGar3.GL873584         C 0 I 1
s canFam3.chrX             392933 461 + 123869142 -----AATTGAACATCTCATTTTCTCTCTCTCTCTCG--GCCCCC--AGCCTTGAAG--CTCTTAttatttatttatttatttatttatttatttatttatttatttTTAAGTTTCTCCAGTGACCCATATGCCTGAGTGAAAAAACCAGTTAATCGCCCCTGGTGGA----CCCGATACTTCCTGGGGAATTATGGCTCATTG---AGATTTCATAGGAACCGTAAACTCATCTACC--CAGGCGAATCTGCAACTCCC---GAGAG---AACACAGGTC----------AAGAAAAATACACGAATCACAGAAAAACTCTGTTGTCATTTCCCCGTCGTACAAGCACAGA-GCGACCGGTTTCCAAGGATTCCCTGACATTGAGTAGCCCTCTTC-----------------------------CTGAGGGTGGAGGGGCTGTTATTCTG-TAACGTGTGCCGC-TGAGAATATTCAGAAAGAGTTAAATAATGGAATAAAACGGAGACAAGGCGTACGGAACAGGG
i canFam3.chrX             C 0 C 0

a score=-6185.000000
s hg38.chrX_KI270880v1_alt 277518 3 +    284869 CCA-
s panTro5.chrX             462466 3 + 155549662 CCA-
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497891 3 + 155392059 CCA-
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356783 3 +    417917 CCA-
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     9331 2 +     47233 CC--
i macFas5.chrUn_KE146044   I 1 I 14
s macNem1.NW_012017243v1   461869 2 +  25972781 CC--
i macNem1.NW_012017243v1   I 1 I 19
s chlSab2.chrUn_KE147541v1 261896 2 -    811265 CC--
i chlSab2.chrUn_KE147541v1 I 1 I 1
s manLeu1.NW_012108508v1   330470 2 -    350446 CC--
i manLeu1.NW_012108508v1   I 1 I 1
s colAng1.NW_012115411v1   453252 2 +   1230721 CC--
i colAng1.NW_012115411v1   I 2 C 0
s saiBol1.JH378345         279204 2 +    465904 CC--
i saiBol1.JH378345         I 1 I 1
s otoGar3.GL873584         354851 2 +  11138919 TC--
i otoGar3.GL873584         I 1 I 2
s canFam3.chrX             393394 3 + 123869142 CC-A
i canFam3.chrX             C 0 C 0
e cerAty1.NW_012001098v1   323217 22 -   1025902 I
e rheMac8.chrX             170728 22 + 149150640 I

a score=2991.000000
s hg38.chrX_KI270880v1_alt 277521 10 +    284869 ATTCTAAAAA
s panTro5.chrX             462469 10 + 155549662 ATTATAAAAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497894 10 + 155392059 ATTATAAAAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356786 10 +    417917 ATTATAAAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044     9347  7 +     47233 ATTTTTA---
i macFas5.chrUn_KE146044   I 14 C 0
s chlSab2.chrUn_KE147541v1 261899 10 -    811265 ATTAAAAAAA
i chlSab2.chrUn_KE147541v1 I 1 I 10
s manLeu1.NW_012108508v1   330473  6 -    350446 ATT----AAA
i manLeu1.NW_012108508v1   I 1 I 10
s colAng1.NW_012115411v1   453254 10 +   1230721 ATTaaaaaaa
i colAng1.NW_012115411v1   C 0 I 11
s saiBol1.JH378345         279207  9 +    465904 ATTAAGTCA-
i saiBol1.JH378345         I 1 C 0
s otoGar3.GL873584         354855  8 +  11138919 ATTAAAAA--
i otoGar3.GL873584         I 2 C 0
s canFam3.chrX             393397  7 + 123869142 -TTAAAAA--
i canFam3.chrX             C 0 C 0
e cerAty1.NW_012001098v1   323217 22 -   1025902 I
e rheMac8.chrX             170728 22 + 149150640 I
e macNem1.NW_012017243v1   461871 19 +  25972781 I

a score=1220568.000000
s hg38.chrX_KI270880v1_alt 277531 238 +    284869 CCTAAATGCTGGAGGCGGCGGGGTGGCCT--GTGGTTGGTCTCTGCAAATTTTCTCCGGATCTGACAGAGATCCAGTTCCGTCACCTCCAGGGCACAACGTAAGACCCCTGTTTCTGCAGTTCTGCCTTTTTAATTGAT-CGCCAGCGCTTTCTGGAAGATGATAGAATAAGGCCAGATTGTACGTGCCGGGGTGCTGATCTTCATGACTGG-GGTATGT--GTGTGTGTTCTCCAAAATTA-AA
s panTro5.chrX             462479 239 + 155549662 CCTAAATGCTGGAGGCGGCGGGGTGGCCT--GTGGTTGGTCTCTGCAAATTTTCTccggatctgacagagacccagttccgtcacctccagggcacaacgtaagacccctgtttctgcagttctgcctttttaattgat-CGCCAGAGCTTTCTGGAAGATGATAGAATAAGGCCAGATTGTACGCGCCGGGGTGCTGATCTTCATGACTGG-GGTATGT--GTGTGTGTTCTCCAAAATTAGAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             497904 239 + 155392059 CCTAAATGCTGGAGGCGGCGGGGTGGCCT--GTGGTTGGTCTCTGCAAATTTTCTccggatctgacagagacccagttccgtcacctccagggcacaacgtaagacccctgtttctgcagttctgcctttttaattgat-CGCCAGAGCTTTCTGGAAGATGATAGAATAAGGCCAAATTGTACGCACCGGGGTGCTGATCTTCATGACTGG-GGTATGT--GTGTGTGTTCTCCAAAATTAGAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   356796 237 +    417917 CCTAAATGCTGGAGGCGACGGGGTGGCCT--GTGGTtcgtctctgcaaattttctccgcatctgacagagacccagttccgtcacctccagggcacaacgtaagacccctgtttctgcagttctgcctttttaattgat-CGCCAGAGCTTTCTGGAAGATGATAGAATAAGGCCAAATTGTACGCGCCGGGGTGCTGATCTTAATGACTGG-GGTA--T--GTGTGTGTTCTCCGAAATTAGAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             170750 241 + 149150640 TATAAATGCTGGAGACGGTGGGGTGGCCC--ATGGTCAGTCTCTGCACATTTTCCCCGGATCTGACAGATACCCAGTTCCGTCACCTCCAGGGCACCACGGAAGGCCCGTATTTCCGCGGGTCTGTCTTTTTAATTGCT-CACCAGAGCTCTGTGGAAGATGATAGAATAAGGCCAGATGGTACGTCCCGTGGTGCTGACGTTAATGACTGG-GGTATGTGCGTGTGTGTTCTCCGAaattaaaa
i rheMac8.chrX             I 22 C 0
s macFas5.chrUn_KE146044     9354 239 +     47233 --TAAATGCTGGAGACGGTGGGGTGGCCC--ATGGTCAGTCTCTGCACATTTTCCCCGGATCTGACAGATACCCAGTTCCGTCACCTCCAGGGCACCACGGAAGGCCCGTATTTCCGCAGGTCTGTCTTTTTAATTGCT-CACCAGAGCTCTGTGGAAGATGATAGAATAAGGCCAGATGGTACGTCCCGTGGTGCTGACGTTAATGACTGG-GGTATGTGCGTGTGTGTTCTCCGAAATTAAAA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   461890 241 +  25972781 TATAAATGCTGGAGACGGTGGGGTGGCCC--ATGGTCAGTCTCTGCACATTTTCCCCGGATCTGACAGATACCCAGTTCCGTCACCTCCAGGGCACCACGGAAGGCCCGTATTTCCGCAGGTCTGTCTTTTTAATTGCT-CACCAGAGCTCTGTGGAAGATGATAGAATAAGGCCAGATGGTACGTCCCGTGGTGCTGATGTTAATGACTGG-GGTATGTGCGTGTGTGTTCTCCGAAATTAAAA
i macNem1.NW_012017243v1   I 19 C 0
s cerAty1.NW_012001098v1   323239 243 -   1025902 TGTAAATGCTGGAGACGGTGGTGTGGCCCCTGTGGTCAGTCTCTGCACATTTTctctggatctgacagagacccagttccgtcacctccagggcaccacggaaggcccgtatttccgcaggtctgtctttttaattgCT-CGCCGGAGCTCTGTGGAAGATGATAGAATAAGGCCAGATGGTACGTCCCGCGGTGCTGACGTTAATGACTGG-GGTATGTGCGTGTGTGTTCTCCGAAATTAAGA
i cerAty1.NW_012001098v1   I 22 C 0
s chlSab2.chrUn_KE147541v1 261919 241 -    811265 TCTAAATGCTGGAGACGGTGGGGTGGCCC--ATGGTCAGTGTCTGCAAATTTTCTCCAGGTCTGACACAGACCCAGTTCCGTCACCTCCAGGGCACCAGGGAAGGCCCATATTTCCACAGTTCTGTCTTTTTAATTGCT-CGCCAGAGCTCTGTGGAGGATGATAGAATAAGGCCAGATAGTGCGTCCCGTGGTGCTGACGTTAATGACTGG-GGTATGTGCGTGTGCGTTCTCCGAAATTAAAA
i chlSab2.chrUn_KE147541v1 I 10 C 0
s manLeu1.NW_012108508v1   330489 243 -    350446 TATAAATGCTGGAGACGGTGGGGTGGCCCCtgtggtcagtccctgcacattttctctggatctgacagagacccagttccatcacctccagggcaccacggaaggcccgtgtttCCGCAGGTCTGTCTTTTTAATTGCT-CGCCGGAGCTCTGTGGAAGATGATAGAATAAGGCCAGATGGTACGTCCCGTGGTGCTGACGTTAATGACTGG-GGTATGTGCGTGTGTGTTCTCCGAAATTAAAA
i manLeu1.NW_012108508v1   I 10 C 0
s colAng1.NW_012115411v1   453275 231 +   1230721 TCTAAATGCTGGAGACGGCGAGGTGGCCC--ACGGTCGGTCTCTGCAAATTGTctctggatgtgacagagacccagctccgtcacctccagggcagcacggaaggcccgtatttctgcaggtctgcctttgtaattgatCCGCCGGAGCTGTGTGGAAGACGATAGAATAAGGTTAGATCATAC-----------CCCATCTTAATGACTGG-GGTGTGTGCGTGTGGGTTCTCCGAAATTAAAA
i colAng1.NW_012115411v1   I 11 C 0
s saiBol1.JH378345         279216 199 +    465904 CGTCAACGCCGCAGGCAGCAG----------GTGGCCTGTCTCCCC-----TTCT------------GAGACCCGATTCACTCACCTCCAGGGCCCAGCGCAGGAAACGG------GCGTTTCTGCCAT--TAATTGAT-C---------CGGTTTCAGGTGACGGAATCAGGCCAGCCGTGCCGGGCCGTGCCGCCGACGCCAGTGACGGGCCGTGTGTCCGTGGGTCCCCCCCAAAATTAAA-
i saiBol1.JH378345         C 0 I 687
s otoGar3.GL873584         354863 219 +  11138919 TCTAAGTGCTGCAGGCTGTGG---GTGCC--GTTCTTGGACTCTGGAAATCTTACCCGGATCTGACAGAGACCCAGTTCAGTTACCTCCAGGGCAGAGGGTAAAG-CCATCTTTCTGCATTTCTACTTTTTTAATTGAT-AGGCAGAGCTTTGTTGGATGTGATAGAATAAGGCCAAATTGCATTCAACGCAATGCT----------------CGGATTT--CTCTGTGGTCTCCTAAATTAAA-
i otoGar3.GL873584         C 0 I 2
s canFam3.chrX             393404 233 + 123869142 TCTAAGTGCTGGAGGCGCTGG-GTGCCCC--GTTCTTGGACTTTGGATATATTCTCCGGATCTGACAAAGACCCAGTTCAATTACCTCCAGGGCAGAGGGTAAG--CTGTATTTCTGCAATTCTACTTTTTTAATTGAT-AGGTAGAGCGTTGTTGGATATGATAGAATAAGGCCAAATGTTTTTCACTGGAGCACTTATCTTCATGCCTGG-GATTT----CTCTGTGTTCTCCTAAATTAAA-
i canFam3.chrX             C 0 C 0

a score=843960.000000
s hg38.chrX_KI270880v1_alt 277769 194 +    284869 GGAGCAAAGTGagaccacagattgtacaattccattcgaatcacatgtccagaataggaaaatctactggggcaga-gggtggatcagtagttgcttaggact---gggggaa-caaggatgggataactacggagggagggatctgaagatggcaagtcagcttccttggggggtgataaaga--tatcctaaaagtgac
s panTro5.chrX             462718 193 + 155549662 GGAGGAAAGTGagaccacagattgtacaattccattcgaatcccatgtccagaataggaaaatctattggggcgga-gggtggatcagtagttgcttaggact---gggggaa-ccaggatgggataactaaggagggaggg-tctgaagatggcaagtcagcttccttggggggtgataaaaa--tatcctaaaagtgac
i panTro5.chrX             C 0 C 0
s panPan2.chrX             498143 193 + 155392059 GGAGGAAAGTGagaccacagattgtacaatttcattcgaatcccatgtccagaataggaaaatctattggggcgga-gggtggatcagtagttgcttaggact---gggggaa-ccaggatgggataactacggagggaggg-tctgaagatggcaagtcagcttccttggggggtgataaaaa--tatcctaaaagtgac
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357033 194 +    417917 GGAGGAAAGTGagaccacagattgtacaattccattcgaatcacatgtccagaacaggaaaatctatgggggcgga-gggtggatcagtagttgcttaggact---gggggaa-ccaggatgggataactacggagggaggggtctgaagatggcaggtcagcttctttggggggtgataaaga--taccctaaaagtgac
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             170991 193 + 149150640 ggagg-aagtgagacctcacattctatcattccattcgagtcacatgtctggaatagggaaatctattggggtaga-gggtggaacagtaggtgcttgggact---ggggggatccagggtgggagaactagggagggaggg-tctgacgacaggaactcagcttctttgggacgtgattaaga--tgtcctaaaagtgac
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     9593 193 +     47233 GGAGG-AAGTGagacctcagattctatcattccattcgagtcacatgtctggaatagggaaatctattggggtaga-gggtggaacagtaggtgcttgggact---ggggggatccagggtgggagaactagggagggaggg-tctgacgacaggaactcagcttctttgggacgtgattaaga--tgtcctaaaagtgac
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   462131 194 +  25972781 GGAGGAAAGTGagacctcagattctatcattccattcgagtcacatgtctggaatagggaaatctattggggtaga-gggtggaacagtaggtgcttgggact---ggggggatccagggtgggagaactagggagggaggg-tctgatgacaggaactcagcttctttgggacgtgattaaga--tgtcctaaaagtgac
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   323482 194 -   1025902 GGAGGAAAGTGagacctcagattctatctttccattcgagtcacatgtccggaatagggaaatctattggggtaga-gggtggaacagtaggtgtttgggact---ggggggatccagggtgggagaactaggcagggaggg-tctgacgacaggaactcagcttctttggaaggtgataaaga--tgtcctaaaagtgac
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 262160 195 -    811265 GGAGGAAAGTGagacctcagattctatctttccattcgagtcacatgtccggaatagggaaatctattggggtagagggggggaacagtaggtgcttgggact---ggggggatccaggatgggagaactaggcagggaggg-tctgatgacaggaactcagcttctttgggaggtgataaaga--tgtcctaaaagtgac
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   330732 194 -    350446 GGAGGAAAGTGagacctcagattctatctttccattcaagtcacatgtccggaatagggaaatctattggggtaga-gggtggaacagtaggtacttgggaat---ggggggatccaggatgggagaactaggcagggaggg-tctgatgacaggaactcagcttctttgggaggcgataaaga--tgtcctaaaagtgac
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   453506 191 +   1230721 GGAAGAAAGTGagacctcagattctatcattccattccagtcacgtgtcc------gggaaatctattggggtcga-gggtggatcaggagttgcttaggacttggggggggaaccaggatgggagaactagggagggaggg-tctgacgacacgaactcagcttctttgggaggtgataaaga--tgtcctgaaagtgac
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         355084 161 +  11138919 GGAGGACCATGagaccacgtatcctaagagtcccttcatgcagaatgcacagaacaggtgagtctctgtggacaga-gagtgggccagtgattgattaggact---gagggcaggaggtatgagaga-------tgggagtg-gctg--------------------------ggtaataaaaa--tgttctaaaattgac
i otoGar3.GL873584         I 2 C 0
s canFam3.chrX             393637 188 + 123869142 GGGGGGAaac-agaccaggtatcctatgattgcacatggatgaaacgtccagaggaggcaaatctattcagacaga-aatgggatgcgtgtttgcatggagga---tgcgggc----ggaggggggtcgtggcggtgactgg-tcatgacacggggtgtca---tttttggggggtggcggtgaactcttctcaaatcgac
i canFam3.chrX             C 0 I 2255
e saiBol1.JH378345         279415 687 +    465904 I

a score=710684.000000
s hg38.chrX_KI270880v1_alt 277963 138 +    284869 tctgA----------------------------------------------GTGCCTTAAATAGATGCATTGTACGA---TATGTCAGTTATAGCCCGACAAACCTGCTTTGAA-GAAAAAGAAGGCAGATTGTGAAATACACATAATAAATGGAAGCAAAGCAAATGACAATGATTTTTAAATTTAt
s panTro5.chrX             462911 138 + 155549662 tctgA----------------------------------------------GTGCCTTAAAAAGATGCATTGTACGA---TATGTCAGTTATAGCCCGACAAACCTGCTTCGAA-GAAAAAGAAAGCAGATTGTGAAATACACACAATAAATGGAAGCAAAGCAAATGACAATGATTTTTAAATTTAt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             498336 138 + 155392059 tctgA----------------------------------------------GTGCCTTAAATAGATGCCTTGTACGA---TATGTCAGTTATAGCCCGACAAACCTGCGTCGAA-GAAAAAGAAGGCAGATTGTGAAATACACACAATAAATGGAAGCAAAGCAAATGACAATGATTTTTAAATTTAt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357227 184 +    417917 tctgaggaccgttgctcaactctgtgaatataataaaacctattgaattgtgtgacttaaatagatgcattgtatga---taggtcagttatagcccgacaaacctGCTTCGAA-GGAAAAGAAGGCAGATTGTGAAATACACACAACAAATGGAAGCAAAGCAAATGACAATGATTTTTAAATTTAt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             171184 185 + 149150640 tctgatgaccattgctgaactctgggaatataacaaaacctatagaactgtgtgccttaaatagatgcgttggatga---tacttcggttataGCCGGACACACCTGCTTCAAAGGAAAAGGAAGGCAGATTGTGAGATACACATAATAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     9786 185 +     47233 tctgatgaccattgctgaactctgggaatataacaaaacctatagaactgtgtgccttaaatagatgcgttggatga---tacgtcggttataGCCGGACACACCTGCTTCAAAGGAAAAGGAAGGCAGATTGTGAGATACACATAATAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   462325 185 +  25972781 tctgatgaccattgctgaactctgggaatataataaaacctatagaactgtgtgccttaaatagatgcgttggatga---tacgtcggttataGCCGGACACACCTGCTTCAAAGGAAAAGGAAGGCAGATTGTGAGATACACATAATAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   323676 184 -   1025902 tctgatgactattgctgaactctgtgaatataataaaacctatacaattgtgtgccttaaatagatgcgttggatga---tacgtcggttacagccggataaacctGCTTCAAA-GAAAAAGAAGGCAGATTGTGAGATACACATAGTAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 262355 184 -    811265 tctgatgaccattgctgaactctgtaaatataataaaacctatagaattgtgtgccttaaatagatgcatcggatga---tatgtcggttatagccagacaaacctGCTTCAAA-GAAAAAGAAGGCAGATTGTGAGATACACGTAATAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   330926 184 -    350446 tctgatgaccattgctgaactctgtgaatataataaaacctatacaattgtgtgccttaaatagatgcattggatga---tatgtcggttatagccggataaacctGCTTCAAA-GAAAAAGAAGGCAGCTTGTGAGATACACATAGTAAATGGAAGCAAAGCAAATGACAATTATTTTTAAATTTAt
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   453697 184 +   1230721 tctgatgaccgttgctgaactctgtgaatataataaaacctataggatcgtgtgccttaaatagatgcattggatga---tacgtcggttatagctggccaaacctgctTCAAA-GAAAAAGAAGGCAGATTGTGAGATACACATATTAAATGGAAGCAAAGCAAATGACCATTATTTTTACATTTAt
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         355245 172 +  11138919 tgcggtgatggttgccc-cctttgtgaacacaatgacacccacggcactgtaggctttaaataagggtgttgtatgaaataatgtcgattgtatcacaaccaagctgctgaaaT-AAAAAAGCA-------TATGAAACACCAATAATAAAT-----CTAAGCAAATTACAA--GTTTTTAAAAATAT
i otoGar3.GL873584         C 0 I 3697
e canFam3.chrX             393825 2255 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I

a score=511658.000000
s hg38.chrX_KI270880v1_alt 278101 113 +    284869 ttttattttttgtagagatggggg--------tgtctagctaggtggcccgggctggtctcaaactcatgggctcaagcaatcctccagccttagcctccgaaaatgctgggaccacagat
s panTro5.chrX             463049 113 + 155549662 ttttattttttgtagagatggagg--------tgtctagctaggtggcccgggctggtctcaaactcgtgggctcgaggaatcctccagccttagcctccgaaaatgctgggaccacagat
i panTro5.chrX             C 0 C 0
s panPan2.chrX             498474 113 + 155392059 ttttattttttgtagagatggggg--------tgtctagctaggtggcccgggctagtctcaaactcgtgggctcgaggaatcctccagccttagcctccgaaaatgctgggaccacagat
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357411 113 +    417917 ttttattttttgtagagatggggg--------tgtctagctaggtggcccgggctggtctctaactcgtgggctcaaggaatcctccagccttagcctctgaaaatgctgggaccacagat
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             171369 121 + 149150640 ttttactttttgtagagatggggggcggggggcgtctagctatgtggcccgggctggtctcaaactcatggcctcaaggaatcctccagtcttagcctccggaagtgctgggaccacagat
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044     9971 121 +     47233 ttttactttttgtagagatggggggcggggggcgtctagctatgtggcccgggctggtctcaaactcatggcctcaaggaatcctccagtcttagcctccggaagtgctgggaccacagat
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   462510 121 +  25972781 ttttactttttgtagagatggggggcggggggcgtctagctatgtggcccgggctggtctcaaactcgtggcctcaaggaatcctccagtcttagcctccggaagtgctgggaccacagat
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   323860 112 -   1025902 ttttactttttgtagagatgggga---------gtctagctatgtggcccgggctggtctcaaactcgtggcctcaaggaatcctccagtcttagcctccagaagtgctgggaccacagat
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 262539 112 -    811265 ttttactttttgtagagatgggga---------gtctagctatgtggcccgggctggtctcaaactcgtggcctcaaggaatcctccagtcttagcctccagaagtgctgagaccacagat
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   331110 112 -    350446 ttttactttttgtagagatgggga---------gtctagctatgtggcccaggctggtctcaaactcgtggcctcaaggaatcctccagtcttagcctccagaagtgctgggaccacagat
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   453881 112 +   1230721 ttttactttttgtagagatgggga---------gtctagctgtgtggcccgggctggcttcaaactcgtggcctcaaggaatcctccactcttagcttccagaagtgctgggaccatagAT
i colAng1.NW_012115411v1   C 0 M 4410
e canFam3.chrX             393825 2255 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         355417 3697 +  11138919 I

a score=1508384.000000
s hg38.chrX_KI270880v1_alt 278214 433 +    284869 gggagtcaccacCGTACCCATCCATACAAC----TTTTTTTTTTTTTAATGTGAGACTACAAAATTATGAGGACATATCATATATTTGGAAAACTAAGGTAGAAAATCTCTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcatagtggctcacgcctgtcatcccagcactttgggagctcgaggtgagcagatcacctgacatcaggagttcaagaccagcct-gccaacgtggtgaaaccccatctctactaaaaataggaaattcacc------tggtggcaggtgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcactgagctgagatcacgccactgcgctccagcctgggtgacagagcaagactccata-------aaaaaaaaaaTTATAACCTAATG
s panTro5.chrX             463162 435 + 155549662 gggagtcaccacCGTACCCATCCATACAAC-----TTTTTTTTTTTTAATGTGAGACTACAAAATTATGAGGACGTATCATATATTTGGAAAACTAAGGTAGAAAATCTCTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcatggtggctcacgcctgtcatcccagcactttgggagctcgaggtgagcagatcacctgacatcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaataggaaattcacc------tggtggcaggtgcctgtaatcccagctactcgggaggctgaggcagaagaatctcttgaacccaggaggtggagattgcactgagctgagatcacgccactgcgctccagcctgggtgatggagcaagactccataa-----gaaaaaaaaaaTTATAACCTAATG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             498587 436 + 155392059 gggagtcaccacCGTACCCATCCATACAAC----TTTTTTTTTTTTTAATGTGAGACTACAAAATTATGAGGACGTATCATATATTTGGAAAACTAAGGTAGAAAATCTCTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcatggtggctcacgcctgtcatcccagcactttgggagctcgaggtgagcagatcacctgacatcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaataggaaattcacc------tggtggcaggtgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcactgagctgagatcacgccactgcgctccagcctgggtgatggagcaagactccataa-----gaaaaaaaaaTATATAACCTAATG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357524 429 +    417917 gggagtcaccaccgtacccatccatacaac----tttttttttttttaatgtgagacTACAAAATTATGAGGACATATCATATATTTGGAAAACTAAGGTAGAAAATCTCTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcatggtggctcacgcctgtcat-ccagcactttgggagctcgaggtgagcagatcacctgacatcaggagttcaagaccagcctggccaacatggtgaaaccccatctctact-aaaataggaaattcacc------tggtggcaggtgcctgtaatcccagctactc-ggaggctgaggcagaagaatcacttgaacccaggaggtggagattgcactgagccgacatcacaccactgcgctccagcctgggtgacacagcaagactccata---------aaaaaaaaTTATAACCTAATG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             171490 433 + 149150640 ggaagtcaccAGCGTAACCATCCATACAAC-----TTTTTTTTTTTTTATGTGACACAACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAGGTAGGAAATCTGTACTTGTGATTGTTTTAAAACTGTGTTCATTggctgggcgtggtgtctcatgcctgtcatcccagcactttgggagctcaaggcggatagatcacctgacatcaagaattgaagaccagcctggccaacatggtgaaa-cccatctctactaaaaatagaaaattcagcagggcatgatggcggatgcctgtaatcgcagttactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcagtgagccgagatcacgccactgctctccagcctgggtgacagagcgagactccatcc-------aaaaaaaaaagataaCCTAATG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    10092 435 +     47233 ggaagtcaccagcgTAACCATCCATACAAC--TTTTTTTTTTTTTTTTATGTGACACTACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAGGTAGGAAATCTGTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcgtggtgtctcatgcctgtcatcccagcactttgggagctcgaggcggatagatcacctgacatcaagaattgaagaccagcctggccaacatggtgaaa-cccatctctactaaaaatagaaaattcagcagggcatgatggcggatgcctgtaattgcagctactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcagtgagccgagatcacaccactgctctccagcctgggtgacagagcgagactccatcc--------aaaaaaaaaGATAACCTAATG
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   462631 440 +  25972781 ggaattcaccAGCGTAACCATCCATACAACttttttttttttttttttATGTGACACTACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAGGTAGGAAATCTGTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcgtggtgtctcatgcctgtcatcccagcactttgggagctcgaggcggatagatcacctgacatcaagaattgaagaccagcctggccaacatggtgaaa-cccatctctactaaaaatagaaaattcagcagggcatgatggtggatgcctgtaattgcagctactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcagtgagccgagatcacgccactgctctccagcctgggtgacagagcgagactccatcc-----aaaaaaaaaaaagataaCCTAATG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   323972 436 -   1025902 gaaagttaccacTGTAACCATCCATACAAC-----TTTTTTTTTTTTAATGTGACACTACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAAGTAGGAAATCTGTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcgtggtgtctcatgcctgtcatcccagcactttgggagct----gcgggcggatcacatgacatcaggagttcaagaccagcctggccaacatggtgaaatcccatctctactaaaaatagaaaattcagcagggtgtggtggtggatgcctgtaattgcagctacttgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcagtgagccgagatcacgccactgctctccagcctgggtgacagagcaagactccatcca-aaaaaaaaaaaaaaagataaCCTAATG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 262651 437 -    811265 ggaagtcaccAGCGTAACCATCCATACAAC---ATTTTTTTTTTTTTAATGTGACACTACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAGGTAGGAAATCTGTACTTGTGATTGTTTTAAAAGTGTATTCATCggccgggtgtggtgtctcatgcctgtcatcacagcactttgggagctggaggtgggtggatcacctgacatcaagaattcaagaccaccctggccaacatggtgaaatcccatctctactaaaaatagaaaattcagcagggcatggtggtggatgcctgtaattgcagctatttgggaggctgaggcggaagaatcgcttgaacccaggaggtggagattgcagtgagctgagatcacaccactgatctccagcctgggtgacagagcaagactcc------aaaaaaaaaaaaaaagataaCCTAATG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   331222 438 -    350446 gaaagttaccacCGTAACCATCTGTACAAC--------TTTTTTTTTAATGTGACACTACAAAATTATGAGGA-----CAAATAAGTGAAAAACTAAAGTAGGAAATCTGTACTTGTGATTGTTTTAAAAGTGTATTCATTggccgggcgtggtgtctcatgcctgtcatcccagcactttgggagctggaggcgggcagatcacacgacatcaagaattcaagaccagcctggccaacatggtgaaatcccatctctactaaaaatagacaattcagcagggcatggtggtggatgcctgtagttgcagctacttgggaggctgaggcagaagaatcgcttgaacccaggaggtggagattgcagtgaactgagatcacgccactgctctccagcctgggtgacagagcaagactccatccaaaaaaaaaaaaaaaaagataaCCTAATG
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             393825 2255 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         355417 3697 +  11138919 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=52685.000000
s hg38.chrX_KI270880v1_alt 278647 11 +    284869 ATTAAATACTG
s panTro5.chrX             463597 11 + 155549662 ATTAAATACTG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499023 11 + 155392059 ATTAAATACTG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357953 11 +    417917 ATTAAATACTG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             171923 11 + 149150640 ATTAAATACTG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    10527 11 +     47233 ATTAAATACTG
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   463071 11 +  25972781 ATTAAATACTG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   324408 11 -   1025902 ATTAAATACTG
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 263088 11 -    811265 ATTAAATACTA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   331660 11 -    350446 ATTAAATACTG
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         359114 11 +  11138919 atgaaatactg
i otoGar3.GL873584         I 3697 C 0
e canFam3.chrX             393825 2255 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=2060942.000000
s hg38.chrX_KI270880v1_alt 278658 493 +    284869 TAGGGAAGAGCTTACCACAATTGCTGGCCCATGGCCAATGCTGGGTATAAGACAG-CTACTGCAAACAACCATGATGATGATACATCTCTTGTGTAGGGTTAGGTTGTTTGAGACACATTCTATGCTCCTTGATTTGATTGGAAGGTACCTTGGTTCCTTGGG-GACTTGGAGGTGATGAAAGCCTCCCTGGGGACAAAACTCACCTTCACTTCTCTAATATCAAGCTTCAGCAACCTGCT-CC-------------AGCTAC-AGCACAGGGTTGGACAGGCCCAACAACAGAGGAAATCCACAAAGTGTGTCTTGACACATACATCCACGGGGTCTAACGAGGTGA----GGCCAATGACTGCTTCCACACACCCCAGCCAGACTCTGACTTCACTCCCGGCAGGTTTCAGTAGACTTGGCAGCAGTTGGAGCGAGCTGGCTTCTtgcggtaggcagccatgttggaagagctcccaatagtcctcgtttcctggtaat-ctcatgcttggat
s panTro5.chrX             463608 493 + 155549662 TAGGGAAGAGCTTACCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGACAG-CTATTGCAAACAACCATGATGATGATACATCTCTTGTGTAGGGTTAGGTTGTTTGAGACACATTCTATGCTCCTTGATTGGATTGGAGGGTACCTTGGTTCCTTGGG-GACTTGGAGGTGACGAAAGCCTCCCTGGGGACAAAAGTGACCTTCGCTTCTCTAATATCAAGCTTCAGCAACCTGCT-CC-------------AGCTAC-AGCACAGGGTTGGACAGGCCCAACAACAGAGGAAATCCACAAAGTGTGTCTTGACACATACATCCACGGGGTCTAACGAGGTGA----GGCCAATGACTGCTTCCACACGCCCCAGCCAGACTCTGACTTCACTCCCAGCAGGTTTCAGTAGACTTGGCAGCAGTTGGAGTGAGCTGGCTTCTtgcggtaggcagccatgttggaagagctcccaatagtccccgtttcctggtaat-ctcatgcttggat
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499034 493 + 155392059 TAGGGAAGAGCTTACCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGACAG-CTATTGCAAACAACCATGATGATGATACATCTCTTGTGTAGGGTTAGGTTGTTTGAGACACATTCTATGCTCCTTGATTGGATTGGAGGGTATCTTGGTTCCTTGGG-GACTTGGAGGTGACGAAAGCCTCCCTGGGGACAAAAGTGACCTTCGCTTCTCTAATATCAAGCTTCAGCAACCTGCT-CC-------------AGCTAC-AGCACAGGGTTGGACAGGCCCAAAAACAGAGGAAATCCACAAAGTGTGTCTTGACACATACATCCACGGGGTCTAACGAGGTGA----GGCCAATGACTGCTTCCACACGCCCCAGCCAGACTCTGACTTCACTCCCAGCAGGTTTCAGTAGACTTGGCAGCAGTTGGAGTGAGCTGGCTTCTtgcggtaggcagccatgttggaagagctcccaatagtccccgtttcctggtaat-ctcatgcttggat
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   357964 503 +    417917 TAGGGAACAGCTTACCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGATAG-CTATTGCAAACAACCATGATGATGATACATCTCTTGTGTAGGGTTAGGTTGTTTGAGACACATTCTATGCTCCTTGATTTGATTGGAGGGTACCTTGGTTCCTTGGG-GACTTGGAGGTGATGAAAGCCTCCCTGGGGACAAAACTCACCTTCACTTCTCTAATATCAAGCTTCAGCGACCTGCT-CCAAAAAAATTTCTGAGCTAC-AGCACAGGGTTGGACATGCCCAACAACAGAGGAAATCCACAAAGTGTGTCTTGACACATACATCCAC--GGTCTAACGAGGTGA----GGCCAATGACTGCTTCCACACACCCCAGCCAGACTCTGACTTCACTCCCAGCAGGTTTCAGTAGACTTGGCAGCAGTTGGAGTGAGCTGGCTTCTtgtggtaggtagccatgttggaagagct-ccaatagtccctgtttcctggtaat-ctcatgcttggat
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             171934 504 + 149150640 CAGGGAAGAACTTGCCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGATAA-CTATCGCAAACAACCATGATTAT--TACATGTCTTGTGTAGGGTTAGGTTGCTTGAGACACATTCTATGCTCCTTGATTTGATCGGAAGTTACCTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAACTCGTCTTCACATCTCTAATATCAAGCTTCAGTGACCTGCT-TCAAAAACATTTCTGGGCTAC-AGCACAAGGTTGGACAAGCCCAACGACAGAGGATATCCACAAAGTGTGCCTTGACGTGTCCCTCCATGGGGTCTAACGAGGTGA----GGCCAATGACTCCTTCCACATGCCCCAGCCAGGCTCTGACTTCACTCACAGCAGCTTTCAGTAGACTCGGCAGCCCTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagctcccaacggtccccgtttcctggtaat-ctcatgcttgggt
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    10538 504 +     47233 CAGGGAAGAACTTGCCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGATAA-CTATTGCAAACAACCATGATGAT--TACATGTCTTGTGTAGGGTTAGGTTGCTTGAGACACATTCTATGCTCCTTGATTTGATCGGAAGTTACCTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAACTCGTCTTCACATCTCTAAGATCAAGCTTCAGTGACCTGCT-TCAAAAACATTTCTGGGCTAC-AGCACAAGGTTGGACAAGCCCAACGACAGAGGATATCCACAAAGTGTGCCTTGACGTGTCCCTCCATGGGGTCTAACGAGGTGA----GGCCAATGACTCCTTCCACATGCCCCAGCCAGGCTCTGACTTCACTCACAGCAGCTTTCAGTAGACTCGGCAGCCCTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagctcccaacggtccccgtttcctggtaat-ctcatgcttgggt
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   463082 504 +  25972781 CAGGGAAGAACTTGCCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGATAA-CTATTGCAAACAACCATGATGAT--TCCATCTCTTGTGTAGGGTTAGGTTGCTTGACACACATTCTATGCTCCTTGATTTGATCGGAAGTTACCTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAACTCGTCTTCACATCTCTAATATCAAGCTTCAGTGACCTGTT-TCAAAAACATTTCTGGGCTAC-AGCACAAGGTTGGACAAGCCCAACGACAGAGGATATCCACAAAGTGTGCCTTGACGTGTCCCTCCATGGGGTCTAACGAGGTGA----GGCCAATGACTCCTTCCACATGCCCCAGCCAGGCTCTGACTTCACTCGCAGCAGCTTTCAGTAGACTCGGCAGCCGTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagctcccaacggtccccgtttcctggtaat-ctcatgcttgggt
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   324419 496 -   1025902 CAGGGAAGAACTTGCCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAG-----CTATTGCAAACAACCATGATGAT--TATATCTCTTGTGTAGGGTTAGA----TTGAGACACATTCTATGCTCCTTGATTTGATCAGAAGTTACCTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAACTCATCTTCACATCTCTAATATCAAGCTTCAGTGACCTGCT-TCAAAAACATTTCTGAGCTAC-AGCACAAGGTTGGACAAGCCCAACGACAGAGGATATCCACAAAGTGTGTCTTGACGTGTCCCTCCATGGGGTCTAACGAGGTGA----GGCCAATGACTCCTTCCACATGCCCCAGCCAGGCTCTGACTTCACTCACAGCAGCTTTCAGTAGACTTGGCAGCCGTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagctcccaacagtccccgtttcctggtaat-ctcatgcttgggt
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 263099 496 -    811265 CAGGGAAGAACTTGCCACAGTTCCTGGCCCATGGCCAATGCTGGGTATA----AC-CTATTGCAAACAACCATGATGAT--TACATCCCTTGTGTAGGGTTAGA----TTGAGACACATTCTATGCTCCTTGATTTGATCGGAAGTTACTTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAACTCGTCTTCACATCTCTAATATCAAGCTTCAGTGGCCTGCT-TCAAAAACATTTCTGGGCTAC-AGCACAAGGTTGGACAAGCCCAACGACAGAGGACATCCACAAAGTGTGCCTTGACGTGTCCCTCCATGGGGTCTAACGAGGAGA----GGCCAGTGACTCCTTCCACATGCCCCAGCCAGGCTCTGACTTCACTCACAGCAGCTTTCTGTAGACTTGGCAGCCGTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagctcccaacggtccccgtttcctggtaat-ctcatgcttgggt
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   331671 500 -    350446 CAGGGAAGAACTTGCCACAATTCCTGGCCCATGGCCAATGCTGGGTATAAGATAA-CTATTGCAAACAACCATGATGAT--TACATCTCTTGTGTAGGGTTAGA----TTGAGACACATTCTATGCTCCTTGATTTGATCGGAAGTTACCTTGGTTCCTTTGGCGACTTGGAGGTAA-AAAAGTGTCCCTGGGGACAAAATTCGTCTTCACATCTCTAATATCAAGCTTCAGTGACCTGCT-TCAAAAACATTTCTGGGCTAT-AGCACAAGGTTGAACATGCCCAACGACAGAGGAAATCCACAAATTGTGCCTTGACGTGTCCCTCCATGGGGTCTAACGAGGTGA----GGCCAATGACTCCTTCCACATGCCCCAGCCAGGTTCTGACTTCACTCACAGCAGCTTTCAGTAGACTCGGCAGCCGTTGGAGGGAGCTGGCTTCTtgcagtcggcagccatgttggaagagcccccaacggtccccgtttcctggtaat-ctcatgcttgggt
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         359125 477 +  11138919 ca--aaagagcttggcacaattactggcccatggcaggtgctggataaaagacagcctatcaCAAATAAAAATGTTGATCATACATCCGTTGGGCA-AGTTCGATTCTTTGAGAAGCATTTGAGGCCTCTTGGTTAGCTTGGAGGATGACTTGGCTCCTCTGCTGAATTGGAAGTGACAGGAGCCTCCCTGGGGACAAAACTCATTTTCACTTCTTTGGTGTCAACCTTCAGCGTTCTATT-CCAAAATC--TTCTAAGCCACAAGCATAGGGCTAGACATGC---AGGACAGTGGAGGCCCA-AAAATATTTCTCAACACATCT---------------------------GCTTAGCAACTATTTCCATGTGACCCATCCAGACCCCAAGTTCACTTGTAGAAGGTTTCAGTAGAGTTGGTGGGGGGTGGACTGAACAAGTGCCTTGTGGTAGGCAGACATTTTGAAATGATTCTGAACAATCCCAATCTCCTGCTATT-CTCATGCTTGGGT
i otoGar3.GL873584         C 0 I 10
s canFam3.chrX             396080 469 + 123869142 taggacagagcgtggcac-gtccctaggccatcgcaagtgctggataaaaggcagATTGTTGCTCGTGTCAATGGTGATGATCCATCCTGTATGC-----TCAGCTCTTTGAGGAGCATCCAAGGCTAGTTCATTAGGTCGGAGGAACTCTTCGTTTCTTTGGTGACACGGAGGTGATAGAAGCCTCCTTGTGGATGAGACTCGTCTTTGAGGCTCTAGTGTCAGGC-TAAGTGTCCTGCTGTCAAGGACAT-------CGAC-ATCGCAGGCC----CAGGGTGGACCACCGTGGACAACCACACAG---------------CCATCCACATGGTCCTGGAAAGTCGAACCGGTCAATGGCTGCCTCCAGGGCTTCTTGCTGGAC-CTGACTTTGCTCCTGGTGGGTTTCATCCGAGT---------TCTGACAGACCCAGCTTCTAGGGCTTggcagctacctcagaatggctcccaaagatcc--gtttcccggacgtgctcacccttatgt
i canFam3.chrX             I 2255 C 0
e saiBol1.JH378345         279415 687 +    465904 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=135527.000000
s hg38.chrX_KI270880v1_alt 279151 44 +    284869 catcttcttctcttgagtgAAGAGAAGAACTGC--agagagag--aca--
s panTro5.chrX             464101 40 + 155549662 catcttcttctcttgagtgAAGAGAAGAACTGC--agagag------a--
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499527 42 + 155392059 catcttcttctcttgagtgAAGAGAAGAACTGC--agagagag----a--
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358467 46 +    417917 catcttcttctcttgagtgAAGAGAAGAACTGC--agagagagagaga--
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             172438 42 + 149150640 tgtcttcttctcttgagtgAAGAGAAGAACTGC--AGcgagag----a--
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    11042 44 +     47233 tgtcttcttctcttgagtgAAGAGAAGAACTGCAgagagagag----a--
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   463586 40 +  25972781 tgtcttcttctcttgagtgAAGAGAAGAACTGC----agagag----a--
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   324915 44 -   1025902 catcttcttctcttgagtgAAGAGAAGAACTGCagagagagag----a--
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 263595 38 -    811265 catcttcttctcttgactgAAGAGAAGAACTGC------agag----a--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   332171 42 -    350446 catcttcttctcttgagtgAAGAGAAGAACTGC--agagagag----a--
i manLeu1.NW_012108508v1   C 0 C 0
s canFam3.chrX             396549 40 + 123869142 gatcccattccccggagcatggagggg----gc--acagagag----tca
i canFam3.chrX             C 0 I 1260
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602 10 +  11138919 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=585469.000000
s hg38.chrX_KI270880v1_alt 279195 159 +    284869 gagacagagagacagatcacaggggcagtttcccccatactgttctcaagataaatgagtcaactcttacACCTCTTTTCTCTGGTGTAAAACAAGGCTGGTGAACAGGCAGAGAGAACTGGGGTGTTGGAGTA--------GCATTGACCTTCCTTCTTCATCCCT
s panTro5.chrX             464141 159 + 155549662 gagagagagagaCAgatcacaggggcagtttcccccatagtgttctcaagataaatgagtcaactcttacACCTCTTTTCTCTGGTGTAAAACAAGGCAGGTGTACAGGCAGAGAGAACTGGGGTGTTGGAGTA--------GCATTGAACTTCCTTCTTCATCCCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499569 159 + 155392059 gagagagagagaCAgatcacaggggcagtttcccccatagtgttctcaagataaatgagtcaactcttacACCTCTTTTCTCTGGTGTAAAACAAGGCAGGTGTACAGGCAGAGAGAACTGGGGTGTTGGAGTA--------GCATTGAACTTCCTTCTTCATCCCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358513 159 +    417917 gagagagagagagagatcacaggggcagtttcccccatgccgttctcatgataaatgagtcaactcttacACCTCTTTTCTCTGGTGTAAAACAAGGCTGGTGAACAGGCAGAGAGAACTGGGGTGTTGGAGTA--------GCATTGACCTTCCTTTTTCATCCCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             172480 167 + 149150640 gagagagagagacagagatcatgaggctgttcccccatgctgttctcatgacaaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAACAAGGCTGGGGAACAGGCAGAGAGAACTGGGGTGTTGGAGTAGCATTGACGCATTGACCTTCCTTCTTCATCCCT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    11086 167 +     47233 gagagagagagacagagatcatgaggctgttcccccatgctgttctcatgacaaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAACAAGGCTGGGGAACAGGCAGAGAGAACTGGGGTGTTGGAGTAGCATTGACGCATTGACCTTCCTTCTTCATCCCT
i macFas5.chrUn_KE146044   C 0 I 299
s macNem1.NW_012017243v1   463626 167 +  25972781 gagagagagagacagagatcatgaggctgttcccccatgctgttctcatgacaaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAATAAGGCTGGGGAACAGGCAGAGAGAACTGGGGTGTTGGAGTAGCATTGACGCATTGACCTTCCTTCTTCATCCCT
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   324959 167 -   1025902 gagagagagagacagagatcatggggcagttcccccatgctgttctcacgataaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAACAAGGCTGGGGAACAGGCGGAGAGAACTGGGGTGTTGGAGTAGCATTGATGCATTGACCTTCCTTCTTCATCCCT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 263633 167 -    811265 gagagagagagacagagatcatggggtggttcccccatgctcttctcacgataaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAACAAGGCTGGGGAACAGGCAGAGAGAACTGGGGTGTTGGAGTAGCATTGACGCATTGACCTTCCTTCTTCATCCCT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   332213 167 -    350446 gagagagagagacagagatcatggggcggttcccccatgctgttctcacgataaatgggtcaactcttacACCTCTTTCCTCTGGTGTAAAACAAGGCTGGGGAACAGGCAGAGAGAACTGGGGTGTTGGAGTAGCATTGATGCATTGACTTTCCTTCTTCATCCCT
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602  10 +  11138919 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=45162.000000
s hg38.chrX_KI270880v1_alt 279354 11 +    284869 CTATAATCTCT
s panTro5.chrX             464300 11 + 155549662 CTATAATCTCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499728 11 + 155392059 CTATAATCTCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358672 11 +    417917 CTATAATCTCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             172647 11 + 149150640 CTATAAtctct
i rheMac8.chrX             C 0 I 341
s macFas5.chrUn_KE146044    11552 11 +     47233 cTATAATCTCT
i macFas5.chrUn_KE146044   I 299 C 0
s macNem1.NW_012017243v1   463793 11 +  25972781 CTATAAtctct
i macNem1.NW_012017243v1   C 0 I 344
s cerAty1.NW_012001098v1   325126 11 -   1025902 CTATAGtctct
i cerAty1.NW_012001098v1   C 0 I 210
s chlSab2.chrUn_KE147541v1 263800 11 -    811265 CTATAAtctct
i chlSab2.chrUn_KE147541v1 C 0 I 345
s manLeu1.NW_012108508v1   332380 11 -    350446 CTATAATCTCt
i manLeu1.NW_012108508v1   C 0 I 348
e canFam3.chrX             396589 1260 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602 10 +  11138919 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M

a score=32369.000000
s hg38.chrX_KI270880v1_alt 279365 46 +    284869 CCTAGTGCAGGAGTAGGAAAACTAAAAATCACACGTCTGATCATCT
s panTro5.chrX             464311 46 + 155549662 CCTTGTGCAGGAGTAGGAAAACTAAAAATCACACTTCTGATCATCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499739 46 + 155392059 CCTTGTGCAGGAGTAGGAAAACTAAAAATCACACTTCTGATCATCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358683 46 +    417917 TCTTGTGCAGGAGTAGGAAAACTAAAAGTCACACTTCTGATCATCT
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    11563 45 +     47233 TCTTGTGCAGCAATAGGAAAAC-AAAAATGACATTTCCCATCTCCC
i macFas5.chrUn_KE146044   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   332391 348 -    350446 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602 10 +  11138919 I
e chlSab2.chrUn_KE147541v1 263811 345 -    811265 I
e cerAty1.NW_012001098v1   325137 210 -   1025902 I
e colAng1.NW_012115411v1   453993 4410 +   1230721 M
e rheMac8.chrX             172658 341 + 149150640 I
e macNem1.NW_012017243v1   463804 344 +  25972781 I

a score=196991.000000
s hg38.chrX_KI270880v1_alt 279411 46 +    284869 GTGATCTCAGAGTCTTGGACAAGCCTTGCTTGCCAATCAGCAGGGA
s panTro5.chrX             464357 46 + 155549662 GTGATCTCAGAGTCTTGGACAAGCCTTGCTTGCCAATCAGCAGGGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499785 46 + 155392059 GTGATCTCAGAGTCTTGCACAAGCCTTGCTTGCCAATCAGCAGGGA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358729 46 +    417917 GTGATCTCAGAGTCTTGGACAAGCCTTGCTTGCCAATCAGCAGGGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             172999 46 + 149150640 GTGATCGCAGACTCTTGGACAAACCTTGCTTGGCAATCAGTAGGGA
i rheMac8.chrX             I 341 C 0
s macFas5.chrUn_KE146044    11608 46 +     47233 GTGATCGCAGACTCTTGGACAAACCTTGCTTGGCAATCAGTAGGGA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464148 46 +  25972781 GTGATCGCAGACTCTTGGACAAACCTTGCTTGGCAATCAGTAGGGA
i macNem1.NW_012017243v1   I 344 C 0
s cerAty1.NW_012001098v1   325347 46 -   1025902 GTGATCCCAGAATCTTGGACAAACTTTGCTTGACAGTCAGCAAGGA
i cerAty1.NW_012001098v1   I 210 C 0
s chlSab2.chrUn_KE147541v1 264156 46 -    811265 GTGATCCCAGAATCTTGGACAAACGTTGCTTGACAGTCAGCAAGGA
i chlSab2.chrUn_KE147541v1 I 345 C 0
s manLeu1.NW_012108508v1   332739 46 -    350446 GTGATCCCAGAATCTTGGAGAAACTTTGCTTGACAGTCAGCAAGGA
i manLeu1.NW_012108508v1   I 348 C 0
s colAng1.NW_012115411v1   458461 46 +   1230721 GTGATCCCAGAGTCTTGGACAAACCCTGCTTGACAATCAGCAGGGA
i colAng1.NW_012115411v1   M 4410 I 16
e canFam3.chrX             396589 1260 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602 10 +  11138919 I

a score=208944.000000
s hg38.chrX_KI270880v1_alt 279457 57 +    284869 TGGGAGTTGGAGCCATCTCCAagtgtccccccacaaatctatgtccacctggaagtt
s panTro5.chrX             464403 57 + 155549662 TGGGAGTTGGAGCCATCTCCAagtgtccccccacaaatctatgtccacctggaagtt
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499831 57 + 155392059 TGGGAGTTGGAGCCATCTCCAAGTGTCCCCGCACAAATCTATGTCCAcctggaagtt
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358775 57 +    417917 TGGGAGTTGGAGCCATCTCCAagtgtccccccacaaatctgtgtccacctggaagtt
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             173045 57 + 149150640 TGGGAGTTGGAACCATCTCCAAGTGTCCCTCCACAAGTCTATCTCCAcctggaagct
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    11654 57 +     47233 TGGGAGTTGGAACCATCTCCAAGtgtccctccacaagtctatctccacctggaagct
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464194 57 +  25972781 TGGGAGTTGGAACCATCTCCAAGTGTCCCTCCACAAGTCTATCTCCAcctggaagct
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   325393 57 -   1025902 TGGGAGTTGAAGCCATCTCCAAGTGTCCCTCCGCAAGTCTATGATCACCTGAAAGTT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 264202 57 -    811265 TGGGAGTTGAAGCCATGTCCAAGTGTCCCTCCGCAAGTCTATGATCACCTGAAAGTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   332785 57 -    350446 TGGGAGTTGAAGCCATCTCCAAGTGTCCCTCCGCAAGTCTATGATCACCTGAAAGTT
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602 10 +  11138919 I
e colAng1.NW_012115411v1   458507 16 +   1230721 I

a score=1972422.000000
s hg38.chrX_KI270880v1_alt 279514 430 +    284869 tcaaatgcaactttatttgggaaaagcaattttgcaaatgttattaagtgaaggatctagggatgagatcatcctggagtagggtgggtccTAGGTCAAATGAcaggaaatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccaaacctggccTATCATTGATTTAATGATtaatacggttaggctctgtgtccccacccaaatctcatctcaaattgtaattcccatgtgtccagggagggagcttgtggaaggtgattggatcacaggggcagtttttgtcatgctgttctcatgataaatgagtcaattctcagaagagatgatggttttaaagtgtggcacttctttgctctcttg--ctctctctctctcctgAGTAGACTGGCTCATTCTTTCTACTGGTTACAAGCAA
s panTro5.chrX             464460 430 + 155549662 tcaaatgcaactttatttgggaaaagcaattttgcaaatgttattaagtgaaggatctagggatgagatcatcctggagtagggtgggtccTAGGTCAAATGAcaggaaatctgcccacctcggcctcccaaagtgatgggattacaggcatgagccaccaaacctgaccTATCGTTGATTTAATGATtgatacggtttggctctgtgtccccacccaaatctcatctcaaattgtaattcccatgtgtccagggagggagcttgtggaaggtgattggatcacaggggcagtttttgtcatgctgttctcatgataaatgagtcaattcttggaagagatgatggttttaaagtgtggcacttctttgctctcttg--ctctctctctctcctgAGTAGACTGGCTCATTCTTTCTACCTGTTACAAGCAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             499888 430 + 155392059 tcaaatgcaactttatttgggaaaagcaattttgcaaatgttattaagtgaaggatctaaggatgagatcatcctggagtagggtgggtcctaggtcaaatgacaggaAATCTgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccaaacctggcctatccttgatttAATGATtgatatggtttggctctgtgtccccacccaaatctcatctcaaattgtaattcccatgtgtccagggagggagcttgtggaaggtgattggatcacaggggcagtttttgtcatgctgttctcatgataaatgagtcaattcttggaagagatgatggttttaaagtgtggcacttctttgctctcttg--ctctctctctctcctgAGTAGACTGGCTCATTCTTTCTACCAGTTACAAGCAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   358832 432 +    417917 tcaaatgcaactttatttgggaaaagcaattttgcaaatgttactaagtgaaggatctagggatgagatcatcctggagtagggtgggtccTAGGTCAAATGAcaagaaatctgcccacctcggcctcccgaagtgctgggattacaggcatgagccaccaaacctggccTATCATTGATTTAATGATtgatacggtttggctctgtgtccccacccaaatctcatctcaaattgtaattcccatgtgtccagggagggagcttgtggaaggtgattggatcacaggggcagtttttgtcatgttgttctcatgataaatgagtcaattctcagaagagatgatggttttaaagtgtggcacttctttgctctcttgctctctctctctctcctgAGTAGACAGGCTCATTCTTTCTACTGGTTACAAGCAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             173102 428 + 149150640 tcaaatgcaactctgtttgggaaaagcaattttgcaaatgttattaagtgaaggatctagggatgagatcatcctggaatggggtgggtcctagatcaaatgacaggagacccgcccaccttggtctcccaaagtgctgggattacaggcgtgagccaccacacctggccTATCATTGATTTAATGATtgatgcggtttggctctgtgtccccacctaaatctcatctcaaattgtaattcccatatgtccagggagggaccttgtgggaggtgattagatcacaggggcagtttttgtcatgctgttctcatggaaaatgagtcaattctcagaagagatgatgggtttaaactgtggcacttctttgctttcttg----gtctctctctcctgGGTGGACTGGCTCATTCCTTCTACTGGTTACGAGCAA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    11711 428 +     47233 tcaaatgcaactctgtttgggaaaagcaattttgcaaatgttattaagtgaaggatctagggatgagatcatcctggaatggggtgggtccTAGATCAAATGAcaggagatccgcccaccttggtctcccaaagtgctgggattacaggcgtgagccaccacacctggccTATCATTGATTTAATGATtgatgcggtttggctctgtgtccccacctaaatctcatctcaaattgtaattcccatatgtccagggagggaccttgtgggaggtgattagatcacaggggcagtttttgtcatgctgttctcatggaaaatgagtcaattctcagaagagatgatgggtttaaactgtggcacttctttgctttcttg----gtctctctctcctgGGTGGACTGGCTCATTCCTTCTACTGGTTACGAGCAA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464251 428 +  25972781 tcaaatgcaactctgtttgggaaaagcaattttgcaaatgttattaagtgaaggatctagggatgagatcatcctggaatggggtgggtcctagatcaaatgacaggagatccgcccacctaggtctcccaaagtgctgggattacaggcgtgagccaccacacctggccTATCATTGATTTAATGATtgatgcggtttggctctgtgtccccacctaaatctcatctcaaattgtaattcccatatgtccagggagggaccttgtgggaggtgattagatcacaggggcagtttttgtcatgctgttctcatggaaaatgagtcaattctcagaagagatgatgggtttaaactgtggcacttctttgctttcttg----gtctctctctcctgGGTGGACTGGCTCATTCCTTCTACTGGTTACGAGCAA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   325450 428 -   1025902 TCAAatgcaactctgtttgggaaaagcaattttgcaaatgtcattaagtgaaggatctagggatgagatcatcctggaatggggtgggtcctagatcaaatgacaggagatccgcccaccttggtctcccaaagtgctgggattacaggcgtgagccaccacacctggccTATCATTGATTTAATGATtgatgcggttcggctctctgtccccacccaaatctcatcttaaattgtgattcccacatgtccagggaggaaccttgtgggaggtgattggatcacaggggcagttttcgtcatgctgttctcatgaaaaatgagtcaattctcagaagagatgatggttttaaactgtggcacttctttgctttcttg----ctctctctctcctgGGTGGACTGGCTCATTCCTTCTACTGGTTACAAGCAA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 264259 428 -    811265 TCAAatgcaactttgtttgggaaaagcaatttggcaaatgtcattaagtgaaggatctagggatgagatcatcctggaatggggtgggtccTAGATCAAATGAcaggagatccgcccaccttggtctcccaaagtgctgggattgcaggcgtgagccaccacgcctggccTATCATTGATTTAATGATtgatgcggttcggctctctgtccccacccaaatctcatcttaaatggtgattcccacatgtccagggagggaccttgtgggaggtgattagatcacaggggcagttttcgtcatgctgttctcatgaaaaatgagtcaattctcagaagagatgatgggtttaaactgtggcacttcttcgctttcttg----ctgtctctctcctgGGTGAACTGTCTCATTCCTTCTACTGGTTACGAGCAA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   332842 427 -    350446 TCAAatgcaactttgtttgggaaaagcaattttgcaaatgtcattaagtgaaggatctagggatgagatcatcctggaatggggtgggtccTAGATCAAATGAcaggagatccgcccaccttggtctcccaaagtgctgggattacaggcgtgagccaccacacctggccTATCATTGATTTAATGATtgatgcggttcggctctgtgtccccacccaaatctcatcttaaattgtgattcccacatgtccagggaggga-cttgtgggaggtgattagatcacacggacagttttcatcatgctgttctcatgaaaaatgagtcaattctcagaagagatgatggttttaaactgtgacacttctttgctttcttg----ctctctctttcctgGGTGGACTGGCTCATTCCTTCTACTGGTTACGAGCaa
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   458523 393 +   1230721 TCAAatgcaactttgtttgggaaaagcaattttgcaaatgtcattaactgaaggatctagggatgagatcatccgggagtggggtgggtccTAGATCAAATGAcaggagatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacacctggccGATCATT-----------------------------------cacccaaatctcatctcaaattgtaattcccacatgtccagggagggatcttgtgggaggtgattagaccacagggacagtttttgtcatgctgttctcatgaaaaatgagtcaattctcagaagagatgatggttttaaagtgtggcacgtctttgcttttttg----ctctctctctcctgGGTGGACTGGCTCATTTCTTCTACTGGTTACAAGCAA
i colAng1.NW_012115411v1   I 16 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e saiBol1.JH378345         279415 687 +    465904 I
e otoGar3.GL873584         359602  10 +  11138919 I

a score=54494.000000
s hg38.chrX_KI270880v1_alt 279944 9 +    284869 TAGAAGTGA
s panTro5.chrX             464890 9 + 155549662 TAGAAGTGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             500318 9 + 155392059 TAGAAGTGA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   359264 9 +    417917 TAGAAGTGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             173530 9 + 149150640 TAGAAGTGA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12139 9 +     47233 TAGAAGTGA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464679 9 +  25972781 TAGAAGTGA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   325878 9 -   1025902 TAGAAGTGA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 264687 9 -    811265 TAGAAGTGA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   333269 9 -    350446 tagaagtga
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   458916 9 +   1230721 TAGAAGCGA
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         280102 9 +    465904 TAGAAGTGA
i saiBol1.JH378345         I 687 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         359602 10 +  11138919 I

a score=660037.000000
s hg38.chrX_KI270880v1_alt 279953 143 +    284869 TAACAAAAT--------------------------------TGATGGTTTCTCATTTCCTAAATG--G-TACCAGTGGATT--CCTGGTTTCCTCTCTCTCTCTTCTCTCTCTCTATCAACTTTT---------CCCTCAATCTCTCTATCAACCTCCCTCTCTCTCAATCTCAATCTC--TCTCAGTCTC
s panTro5.chrX             464899 144 + 155549662 TAACAAAAT--------------------------------TGATGGTTTCTCATTTCCTAAATG--GTTACCAGTGGATT--CCTGGTTTCCCCTGTCTCTCTTCTCTCTCTCTATCAACTTTT---------CCCTCAATCTCTCTATCAACCTCCCTCTCTCTCGATCTCAATCTC--TCTCAGTCTC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             500327 144 + 155392059 TAACAAAAT--------------------------------TGATGGTTTCTCATTTCCTAAATG--GTTACCAGTGGATT--CCTGGTTTCCCCTGTCTCTCTTCTCTCTCTCTGTCAACTTTT---------CCCTCAATCTCTCTATCAACCTCCCTCTCTCTCAATCTCAATCTC--TCTCAGTCTC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   359273 144 +    417917 TAACAAAAT--------------------------------TGATGGTTTCTCATTCCCTAAATG--GTTACCAGTGGATT--CCTGGTTTCctctctctctcttctctctccctatcaactttt---------gcctcaatctctctatcaacctccctctctctcaatctcaatctc--tctcagtctc
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             173539 142 + 149150640 TGGCAAAAT--------------------------------TGATGGCTTGTCATTTCCAAGATGAAGTTACCTGTGGATT--CCTGGTTTCCTCTCTCTCTCT------TCTCTATCAACTTTT---------CTCTCAATCTCTCTATCAACCTCCCTCTCTGTCAATCTCTCTCTCTGTCTCAGTCTC
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12148 142 +     47233 TGGCAAAAT--------------------------------TGATGGCTTGTCATTTCCAAGATGAAGTTACCTGTGGATT--CCTGGTTTCCTCTCTCTCTCT------TCTCTATCAACTTTT---------CTCTCAATCTCTCTATCAACCTCCCTCTCTGTCAATCTCTCTCTCTGTCTCAGTCTC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464688 142 +  25972781 TGGCAAAAT--------------------------------TGATGGCTTGTCATTTCCAAGATGAAGTTACCTGTGGATT--CCTGGTTTCCTCTCTCTCTCT------TCTCTATCAACTTTT---------CTCTCAATCTCTCTATCAACCTCCCTCTCTGTCAATCTCTCTCTCTGTCTCAGTCTC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   325887 174 -   1025902 TGGCAAAATTGATGGCTTGTCATTTCCAAGATGAAGTTACCTGATGGCTTGTCATTTCCAAGATGAAGTTACCTGTGAATT--CCTGGTTTCTTCTCTCTCTCT------TCTCTATCAACTTTt---------ctctcaatctctctatcaacctccctctctgtcaatctctctctctctctcagtctc
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 264696 142 -    811265 TGACAAAAT--------------------------------TGATGGCTTGTCATTTCCAAGATGAAGTTACCTGTGGATT--CCTGGTTTCCTCTCTCTCTCT------TCTCTATCAACTTTT---------CTCTCAATCTGTCTAGCAACCTCCCTCTCTGTCAAACTCTCtctctctctcagtctc
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   333278 142 -    350446 tggcaaaat--------------------------------tgatggcttgtcatttccaagatgaagttacctgtggatt--cctggtttcctctctctctct------tctctatcTACTTTt---------ctctcaatctctctatcaacctccctctctgtcaatctctctctctctctcagtctc
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   458925 141 +   1230721 TGACAAAAT--------------------------------TGATGGCTTGTCATTTCCAAGATGAAGCTACCTGTGGATT--CCTGGTTTCctctctctctcttctc-ctctctatcaactttt---------ctctcaa----tctatcaatctccctctctgtcaatctccctctc--tctcagtctc
i colAng1.NW_012115411v1   C 0 C 0
s saiBol1.JH378345         280111 141 +    465904 TGATACAAC--------------------------------TGAGGGTTT-TCATGTCCAGGATGAAGTTATCAGTGAAAT--CCTGGCTTCCTCTCTCTGTCC------TGT-TATCAACGTTCAATCTCCCGGTCTCAATCTGTCTTTTAATATCCGTCTCT------CCTTCTCTC--TCTCCGTCTC
i saiBol1.JH378345         C 0 N 0
s otoGar3.GL873584         359612 143 +  11138919 tggcagaag--------------------------------tgaaggaatgtaatttctaagatgggtttaccagtagacttctctggcttcccccctctctct-caatctctctcactgtttct---------ctctctaaACATTTGTCAATCTCTTTCAC----ATAGtctctctc--tcttaacctc
i otoGar3.GL873584         I 10 C 0
e canFam3.chrX             396589 1260 + 123869142 I

a score=2157313.000000
s hg38.chrX_KI270880v1_alt 280096 442 +    284869 ATTCTCAATCTCTTTTGCTCAATCTCTTTCTCAGCTTCTCTCCCTCAATTTCTCTTTTGCAACTTCTCTCTCTCAGTCTGTGTCTCTCAATCTCCCT-----CTCTCAATCTCTCTtgtagtctccctgtctctcatactctctc------tgtttctgtctgtctctgccc--ttgctctagggaaagcaagttcttatgctgtaagttctcctgtaaaaaggtccacatgatacggaactggccatctttggccaaca-----tgagtgagtttagaagtgtgcctttcaccagttgagccttcaaatgagatcccagccctggatgacacagtgacagtaacctgctaggaactgtgaaccagaggcacccagccaagctgctcccagactcccaacccagtgaaaccataagataataaatgc--------atgttgttttaagctgctaagtttgggggtc----ac
s panTro5.chrX             465043 441 + 155549662 ATTCTCAATCTCTTTTGCTCAATCTCTTTCTCAGCTTCTCTCCCTCAATTTCTCTTTCGCAACTTCTCTCTCTCAGTCTGTTTCTCTCAATCTCCCT-----CTCTCAATCTCTCTTTTAGTCTCCctgtctctcatactctctc------tgtttctctctgtctctgccc--ttgttctggggaaagcaagttctcatgctctaagttctcctgtaaagaagtccacatgatatggaactggccatctttggccaaca-----tgagtgagtttagaagtgtgcctttccccagttaagccttcaaatgagatcccagccctggatgacacagtgacagtaacctgccaggaactgtgaaccagaggcacccagccaagctgctcccagactcccaacccagtgaaaacgtaagataataaatgc--------atgttgttttaagctgctaagttt-ggggtc----ac
i panTro5.chrX             C 0 C 0
s panPan2.chrX             500471 441 + 155392059 ATTCTCAATCTCTTTTGCTCAATCTCTTTCTCAGCTTCTCTCCCTCAATTTCTCTTTCGCAACTTCTCTCTCTCAGTCTGTTTCTCTCAATCTCCCT-----CTCTCAATCTCTCTTTTAGTCTCCctgtctctcatactctctc------tgtttctctctgtctctgccc--ttgttctggggaaagcaagttctcatgctctaagttctcctgtaaagaagtccacatgatatggaactggccatctttggccaaca-----tgagtgagtttagaagtgtgcctttccccagttaagccttcaaatgagatcccagccctggatgacacagtgacagtaacctgccaggaactgtgaaccagaggcacccagccaagctgctcccagactcccaacccagtgaaaacgtaagataataaatgc--------atgttgttttaagctgctaagttt-ggggtc----ac
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   359417 442 +    417917 attctcaatctcttttgctcaatctctttctcagcttctctccctcaatttctcttttgcaacttctctctctcagtctgtgtctctcaatctccct-----ctctcaatctgtcttgtagtctccctgtctctcatactctctc------tgtttctgtctgtctctgcgc--ttgctctggggaaagcaagttctcatgctgtaagttctcccgtaaaaaggtccacatgatacggaactggccatctttggccaaca-----tgagtgagtttagaagtgtgcctttccccagttgagccttcaaatgagatcccagccctggatgacacagtgacagtaacctgctaggaactgtgaaccagaggcacccagccaagctgctcccagactcccaacccagtgaaaccataagataataaatgc--------atgttgttttaagctgctaagtttgggggtc----ac
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             173681 433 + 149150640 AGTCTCAATCTCTTTCACTCAATCTCTTTCTAAGCTTCTCTCCCTCAATTTCTCTTTCACGACT--TCTCTCTCCATCTCTCTCTCTCAATCTCCCT-----CTCTCAATCTCTCTTTTACTCTCCCTGTCTCTCATA----CTC------TGcttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcccgtacagaggtgtgcatgataaggaactgaccacctttgggcaaca-----tgaatgagtttggaagtgtgcctttccccagttgagccttcaaatgagatcccagccctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcccaacccaacaaaaccataagataataaaggc--------atgttgttttaagctgctaagttg-gggATC------
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12290 433 +     47233 AGTCTCAATCTCTTTCACTCAATCTCTTTCTAAGCTTCTCTCCCTCAATTTCTCTTTCACGACT--TCTCTCTCCATCTCTCTCTCTCAATCTCCCT-----CTCTCAATCTCTCTTTTACTCTCCCTGTCTCTCATA----ctc------tgtttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcccgtacagacgtctgcatgataaggaactgaccacctttgggcaaca-----tgaatgagtttggaagtgtgcctttccccagttgagccttcaaatgagatcccagccctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcccaacccaacaaaaccataagataataaaggc--------atgttgttttaagctgctaagttg-gggATC------
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   464830 433 +  25972781 AGTCTCAATCTCTTTCACTCAATCTCTTTCTAAGCTTCTCTCCCTCAATTTCTCTTTCACGACT--TCTCTCTCCATCTCTCTCTCTCAATCTCCCT-----CTCTCAATCTCTCTTTTACTCTCCCTGTCTCTCATA----ctc------tgtttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcccgtacagaggtctgcatgataaggaactgaccacctttgggcaaca-----tgaatgagtttggaagtgtgcctttccccagttgagccttcaaatgagatcccagccctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcccaacccaacaaaaccataagataataaaggc--------atgttgttttaagctgctaagttg-gggATC------
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   326061 437 -   1025902 agtctcaatctctttcgctcaatctctttctaagcttctctccctcaatttctctttcacgacttctctctctccatctctctctctcaatctccct-----ctctcaatctctctTTTAGTCTCCCTGTCTCTCATA----Ctc------tgtttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcccgtacagaggtctgcatgataaggaactgaccacctttgggcaaca-----tgagtgagtttggaagtgtgcctttccccagttgagccttcaaatgagatcccaggcctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcccgacccaacaaaaccataagataataaaggc--------atgttgttttaagctgctaagttg-gggATCAC----
i cerAty1.NW_012001098v1   C 0 I 13
s chlSab2.chrUn_KE147541v1 264838 435 -    811265 attctcaatctcttttgctcaatctctttctaagcttctctccctcaatttctctttcacgacttctctctctccatctctctctctcaatctccct-----ctctcaatctctctTTTAGTCTCCCTGTCTCTCATA----ctc------tgtttctctctgtctctgccc--ttgttctggggatagcaagttttcatgttgtaagttctcccgtacagaggtctgcatgataaggaactgaccacctttgggcaaca-----tgagtgagtttggaagtgtgcctttccccagttgagccttcaaatgagatcccagccctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcctgactcaacaaaaccataagataataaatgc--------atgttgttttaagctgctaagttG-GGGATC------
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   333420 435 -    350446 agtctcaatctctttcgctcaatctctttctaagcttctctccctcaatttctctttcacgacttctctctctccatctctctctctcaatctccct-----ctctcaatctctctTTTAGTCTCCCTGTCTCTCATA----ctc------tgtttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcccgtacagaggtctgcatgataaggaactgaccacctttgggcaaca-----tgagtgagtttggaagtgtgcctttccccagttgagctttcaaatgagatcccagccctggctgacacagtgacagcaacctgccaggaactgtgaaccagacgcatccagccaagctgctcccagactcctgagccaacaaaaccataagataataaatgc--------atgttgttttaagctgcaaagttg-gggATC------
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   459066 437 +   1230721 attctcaatctctttcgctcaatctctttctaagcttctctccctcaagttctctttcacgacttctctctctcca----tgtctctgaatctccct-----ctctcaatctctctTTTAGCCTCCCTGTCtctcatactctctc------tatttctctctgtctctgccc--ttgctctggggatagcaagttttcatgttgtaagttctcctgtgaagaggtctgcatgataaggaactgaccaccttcgggcaacg-----tgagtgagtttggaagtgtggctttccccagttgagccttcaaatgagatcccagccctggctgacacagtgagagcaacctgccaggaactgtgaaccagacgcacccagccaagctgctcccagactcccgactcaacaaaaccataagataataaatgc--------atgttgttttaagctgctaagttG-GGGATC--AC--
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         359755 449 +  11138919 actttcattttctctctctcaa----tgtctcaatctctttcactcagtttgtc------------tgtatcccaatttttctctcttaatctctctcaatactctcaatct-tttcccactcaatctgtctctcACAATctctctcctagtatctccctctttccctacccctttgctctgaggaaagcaagtagccattttgtcaacagttctgtggagaggcccatatggcaaggagctgact-tcttgggccaacaccaagtgagtgagtttggatgcatgctcttccccagttgagccttcacatgagacctctgccctggctggtaccatgatgatagcctacaagg-gttttgagtcagaatcactcagccaagctgctctcaacctcctgacccaaggaagctataagataataaatgcacattgttatgttattgttagctgttatgttttggggcc----ac
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I

a score=29114.000000
s hg38.chrX_KI270880v1_alt 280538 30 +    284869 ttgttacacagcaacagctgactcat--acaT
s panTro5.chrX             465484 30 + 155549662 ttgttacacagcaacagctgactcat--acaC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             500912 30 + 155392059 ttgttacacagcaacagctgactcat--acaC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   359859 30 +    417917 ttgttacacagcaagagctgactcat--acaT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             174114 15 + 149150640 -------------ACAAGTGACTCAT--AG--
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12723 15 +     47233 -------------ACAAGTGACTCAT--AG--
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465263 15 +  25972781 -------------ACAAGTGACTCAT--AG--
i macNem1.NW_012017243v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 265273 17 -    811265 -------------ACAAGTGACTCATACAG--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   333855 15 -    350446 -------------ACAAGTGACTCAT--AG--
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   459503 15 +   1230721 ---------------AAGTGACTCGTACAG--
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         360204 30 +  11138919 ttgttacacagcaacagcagactcatataG--
i otoGar3.GL873584         C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e cerAty1.NW_012001098v1   326498 13 -   1025902 I

a score=908608.000000
s hg38.chrX_KI270880v1_alt 280568 200 +    284869 TTTCTTT------------------------GAAATTGAT------------------------TTCCACTTCTGTCACCAGCATCATTCCATAAATTTGCTCTATGTGC--ATTGCTGACCTGCAGTAGAAGTTTTGGAGAAGTGAACCACATCCCCTTATCTGCCATTTGACAGCAAGCAGCCTCAAACATTCATAATTTCTTTCCTGACTCTCCACTCCACACTGTTGCCTGCCTTCCTGGTTCCAG
s panTro5.chrX             465514 200 + 155549662 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCTGTCACCAGCATCATTCCATAAATTTGCTCTATGTGC--ATTGCTGACCTGCAGTAGAAGTTTTGGAGAAGTGAACCACATCCCCTTATCTTCCATTTCACAGCAAGCAGCCTCAAACATTCATAATTTCTTTCCTGACTCTCCACTCCACACTGTTGCCTGCCTCCCTGGTTCCAG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             500942 200 + 155392059 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCTGTCACCAGCATCATTCCATAAATTTGCTCTATGTGC--ATTGCTGACCTGCAGTAGAAGTTTTGGAGAAGTGAACCACATCCCCTTATCTGCCATTTCACAGCAAGCAGCCTCAAACATTCATAATTTCTTTCCTGACTCTCCACTCCACACTGTTGCCTGCCTCCCTGGTTCCAG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   359889 190 +    417917 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCTATCACCAGCATCATTCCATAAATTTGCTCTATGTGC--ATTGCTGACCTGCAGTAGAAGTTTTGGAGAAGTGAACCACATCCCCTTATCTGCCATTTCACAGCAAG----------CATTCATAATTTCTTTCCTGACTCTCCACTCCACACTGTTGCCTGCCTCCCTGGTTCCAG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             174129 200 + 149150640 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCATCCTCATTCCATAAATTTGTTCTATGTGC--ATTGCTGACCTGCAGTGGGAGTTTTGGGAAAGTGAACGACCTGCCCTTATCTGCCGCTTCGCAGCAAGCAGCCTCAAACGTTCAGGATCTCTTTCCTGACCTTCCACCCCACATTGTTGGCTGCCTCCCTGATTCCAG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12738 200 +     47233 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCATCCTCATTCCATAAATTTGTTCTATGTGC--ATTGCTGACCTGCAGTGGGAGTTTTGGGAAAGTGAACGACCTGCCCTTATCTGCCGCTTCGCAGCAAGCAGCCTCAAACGTTCAGGATCTCTTTCCTGACCTTCCACCCCACATTGTTGGCTGCCTCCCTGGTTCCAG
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465278 200 +  25972781 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCATCCTCATTCCATAAATTTGTTCTATGTGC--ATTGCTGACCTGCAGTGGGAGTTTTGGGAAAGTGAACGACCTGCCCTTATCTGCCGCTTCGCAGCAAGCAGCCTCAAACGTTCAGGATCTCTTTCCTGACCTTCCACCCCACATTGTTGGCTGCCTCCCTGGTTCCAG
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   326511 200 -   1025902 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCTTCCTTATTCCATAAATTTGTTCTATGTAC--ATTGCTGACCTGCAGTGGGAGTTCTGGGAAAGTGAACGACCTACCCTTATCTGCCGCTTCGCAGCAAGCAGCCTCAAACGTTCGTGATCTCTTTCCTGACCTTCCACTCCACACTGTTGGCTGCCTCCCTGGTTCCCG
i cerAty1.NW_012001098v1   I 13 C 0
s chlSab2.chrUn_KE147541v1 265290 202 -    811265 GTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCATCATCATTCCATAAATTCGCTCTATGTGCATATTACTGACCTACAGTGGGAGTTTTGGAGAAGTGGACGACCTGCTCTTATCTGCCATTTTGCAGCAAGCAGCCTCAAACGTTCGGGATCTCTTTCCTGACCTTCCACCCCACATTGTTGGCTGCCTCCCTGGTTCCAG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   333870 199 -    350446 TTTCTTT------------------------GAAATTGAT------------------------TTCCACCTCCATCACCATCCTCATTCCATAAATTTGCTCTATGTGC--ATTACTGACCTGCAGTGGGA-TTTTGGAGAAGTGGACAACCTGCTCTTATCTGCCACTTCGCAGCAAGCAGCCTCAAACGTTCGTGATCTCTTCCTTGACCTTCCACTCCACACTGTTGGCTGCCTCCCTAGTTCCCG
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   459518 200 +   1230721 TTTCTTT------------------------GAAATTGAT------------------------TTCCGCCTCCATCACCATCATCATTCCATAAATTCGCTCTATGTGC--ATTACTGACCTGCAGTGGGAGTTTTGGAGAAGTGGACGACCTCCCCTTATCTGCCGCTTCACAGCAAGCAGCCTCAAACATTCGTGATCTCTTTCCTGACCCTCCACTCCACACTGTTGGCTGCCTCCCTGGTTCCAG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         360234 224 +  11138919 -TGCTTGAGTCCATGAGTCCCAGCTCATACAGAGGTTGATATAAAGGGAGGTTGAGAATCTCGCTTCCACCTCC-CCAATTCCATCGTTCCACACATT-GTGCTATA-GC--ATTGTTCACATGC-------------------TATACCACACACCGTCCTCACCCATCATGCAGCAAGCATCCCTGAGCACCTGTGACTTC-TCCCTGGCTCCCCACTCCACACTATTGGTTGCCTTCCTGGTCCCAG
i otoGar3.GL873584         C 0 I 200
e canFam3.chrX             396589 1260 + 123869142 I

a score=1089737.000000
s hg38.chrX_KI270880v1_alt 280768 234 +    284869 ATCTTTGGA-------------------------------TCTGGACTGACACCTGGGCACtgtcataggcatccgtgtgaagagaccacc-aacaggctctgtgtgagcaataaagctttttaatcacctgggtgcaggtgggctgattctgaaaagagagtcagcaaagagtggtgggattatcattagttcttataggttcgggataggtggtggagttaggagcaattttttgtgggcagggagtggatcttacaaaggaca
s panTro5.chrX             465714 265 + 155549662 ATCTTTGGATTCACGTTGTGAACATGAAAATGCTCATCACTCTGGACCGACACCTGGGCACtgtcacaggcatccgtgtgaagagaccacc-aacaggctctgtgtgagcaataaagctttttaatcacctgggtgcaggtgggctgattctgaaaagagagtcagcaaagagtggtgggattatcattagttcttataggtccgggataggcggtggagttaggagcaattttttgtgggcagggagtggatcttacaaaggaca
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501142 265 + 155392059 ATCTTTGGATTCACGTTGTGAACATGAAAATGCTCATCACTCTGGACCGACACCTGGGCACtgtcacaggcatccgtgtgaagagaccacc-aacaggctctgtgtgagcaataaagctttttaatcacctgggtgcaggtgggctgattctgaaaagagagtcagcaaagagtggtgggattatcattagttcttataggtccgggataggcggtggagttaggagcaattttttgtgggcagggagtggatcttacaaaggaca
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360079 265 +    417917 ATCTTTGGATTCACGTTGTGAACATGAAAATGCTCATCACTCTGGACTGACACCTGGGCACtgtcacaggcatccgtgtgaagagaccacc-aacaggctttgtgtgagcaataaagctttttaatcacctgggtgcaggtgggctgattctgaaaagagagtcagcaaagagtggtgggattatcactagttcttataggttcgggataggcggtggagttaggagcaattttttgtgggcagggagtggatcttacaaaggaca
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             174329 266 + 149150640 ATCTTTGGATTCACGCCGTGAACCTGAAAATGCTCCTCACTCTGGACTGGCACCTGGGCACGgtcacgcacgactgtgtgaagagaccaccaaacgggctttgtgtgagcaataaagcgttttaatcacctgggtgccagtgagctgagtcggaaaagaaagtcagcaaagggaggtgggattatcacgagttcttacaggtttgggatgggtggtggaggtaggaggaattttttgtgggcaggggttggatcttacaaattaca
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    12938 266 +     47233 ATCTTTGGATTCACGCCGTGAGCCTGAAAATGCTCCTCACTCTGGACTGGCACCTGGGCACGgtcacgcacgactgtgtgaagagaccaccaaacgggctttgtgtgagcaataaagcgttttaatcacctgggtgccagtgagctgagtcggaaaagagagtcagcaaagggaggtgggattatcacgagttcttacaggtttgggatgggcggtggaggtaggaggaattttttgtgggcaggggttggatcttacaaattaca
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465478 266 +  25972781 ATCTTTGGATTCACGCCGTGAGCCTGAAAATGCTCCTCACTCTGGACTGGCACCTGGGCACGgtcacgcatgactgtgtgaagagaccaccaaacgggctttgtgtgagcaataaagcgttttaatcacctgggtgccagtgagctgagtcggaaaagagagtcagcaaagggaggtgggattatcacgagttcttacaggtttgggatgggcggtggagttaggaggaattttttgtgggcaggggttggatcttacaaattaca
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   326711 256 -   1025902 ATCTTTGGATTCACGCCGTGAACCTGAAAATGCTCCTCACCCCGGACTGGCACCTGGGCACGgtcacccacgtctgtgtgaagagaccaccaaacaggctttgtgtgagcaataaagcattttaatcacctgggtgcaggcgagctgagtcagaaaagagagtcagcaaaaggaggtgggattatcatga----------gtttgtgatgggcggtggagttaggaggaattttttgtgggcaggggttggatcttacaaattaca
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 265492 256 -    811265 ATCTTTGGATTCACGCCGTGAACCTGAAAATGCTTCTCACCCCGGACTGGCACCTGGGCACAAtcacgtgagtctgtgtgaagagaccaccaaacaggctttgtgtgagcaacgaagctttttaatcacctgggtgccggcgagctgagttggaaaagagagtcagcaaagggaggtgggattatcatga----------gtttgggatgggcggtggagttaagaggaattttttgtgggcggggattggatcttacaaattaca
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334069 256 -    350446 ATCTTTGGATTCACGCCATGAACCTGAAAATGCTCCTCACTCTGGACTGGCACCTGGGCACGgtcacgggcgtctgtgtgaagagaccaccaaacaggctttgtgtgagcaataaagcattttaatcacctgggtgcaggcgagctgagtcagaaaagagagtcagcaaaaggaggtgggattatcatga----------gtttgtgatgggtggtggagttaggaggaattttttgtgggcaggggttggatcttacaaattaca
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   459718 266 +   1230721 ATCTTTGGATTCATGCCGTAAACCTGAAAATGCTCATCACCCCGGACTGGCACCTGGGCATtgtcatgtgcatctatgtgaagagaccaccaaacaggctttgtgtgagcaataaagctttttaatcacctgggtgcaggcgggctgagtcggaaaagagagtcagcaaagggaggtgggattatcatgagttcttataggtttgggatgggtggtggagttaggaggaaatttttgtgggcaggggttgcatctcacaaattaca
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I

a score=51164.000000
s hg38.chrX_KI270880v1_alt 281002 16 +    284869 ttctcaagggtgggga
s gorGor5.CYUI01015925v1   360344 15 +    417917 ttctc-agggtgggga
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             174595 16 + 149150640 ttctcaagggtgggga
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    13204 16 +     47233 ttctcaagggtgggga
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465744 16 +  25972781 ttctcaagggtgggga
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   326967 16 -   1025902 ttctcaagggtgggga
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 265748 16 -    811265 ttctcaagggtgggga
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334325 16 -    350446 ttctcaagggtgggga
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   459984 16 +   1230721 ttctcaagggtgggga
i colAng1.NW_012115411v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e panPan2.chrX             501407  0 + 155392059 C

a score=170969.000000
s hg38.chrX_KI270880v1_alt 281018 80 +    284869 tgattttacaaagtaccttcttaagggcgggggaggatattacaaagtaccttctcaagggtgggg-atgattttacaaag
s rheMac8.chrX             174611 81 + 149150640 ggatattacaaagcaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggggaggatattacaaag
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    13220 81 +     47233 ggatattacaaagcaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgagggaggatattacaaag
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465760 80 +  25972781 ggatattacaaagtactttctcaagggt-gggaaggatattacaaagcaccttctcaagggtgggggaggatattacaaag
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   326983 80 -   1025902 ggatattacaaagcaccttctcaagggt-ggggaggatattacaaagcaccttctcaagggtggggaagaatattacaaag
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 265764 79 -    811265 ggatattacaaagtaccttctcaagggtaggggaggatattacaaagtaccttctcaagggtgggg--gaatatcacaaag
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334341 79 -    350446 ggatattacaaagcaccttctcaagggt-ggggaggatgttacaaattaccttctcaagggtgggg-aggatattacaaag
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   460000 79 +   1230721 ggatattagaaattaccttctcaagggt-ggggaggatattacaaggtactttctcaagggtgggg-aggatattacaaag
i colAng1.NW_012115411v1   C 0 M 7360
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e gorGor5.CYUI01015925v1   360359  0 +    417917 C
e panPan2.chrX             501407  0 + 155392059 C

a score=84215.000000
s hg38.chrX_KI270880v1_alt 281098 53 +    284869 taccttcttaagggcgggggaggatattacaaagtaccttctcaagggtg-gGg
s rheMac8.chrX             174692 53 + 149150640 taccttctcaagggtgggggaggatattacaaagtaccttctcaagggtg-ggg
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    13301 53 +     47233 taccttctcaagggtgggggaggatattacaaagtaccttctcaagggtg-ggg
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465840 52 +  25972781 taccttctcaagggt-ggggaggatattacaaagtaccttctcaagggtg-ggg
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   327063 53 -   1025902 caccttctcaaagatgggggaggatattacaaagtaccttctcaagggtg-ggg
i cerAty1.NW_012001098v1   C 0 M 344
s chlSab2.chrUn_KE147541v1 265843 53 -    811265 taccttctcaagggtgagggaggatattacaaattacattctcaagggtgtag-
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334420 51 -    350446 taccttctcaagggtg-gggaggatattacaaagtaccttctcaagggtg-gg-
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e gorGor5.CYUI01015925v1   360359  0 +    417917 C
e panPan2.chrX             501407  0 + 155392059 C

a score=119372.000000
s hg38.chrX_KI270880v1_alt 281151 109 +    284869 gtggatattagaaagtaccttcttaagggcggg-ggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggggaggata
s rheMac8.chrX             174745 107 + 149150640 -aggatattacaaagtaccttctcaagggt-gg-ggaggatattacaaagtaccttctcaagggtgagggaggatattacaaagtaccttctcaagggtgagggaggata
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    13354 107 +     47233 -aggatattacaaagtaccttctcaagggt-gg-ggaggatattacaaagtaccttctcaagggtgagggaggatattacaaagtaccttctcaagggtgagggaggata
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   465892 102 +  25972781 -agcatactacaaagtaccttctcaagggtggg-ggaggatattacaaagtac-----caagggtg-gggaggatattacaaagtaccttctcaagggtgggggaggata
i macNem1.NW_012017243v1   C 0 I 25
s chlSab2.chrUn_KE147541v1 265896 106 -    811265 gaggatattac-aagtaccttctcaagggt-ggaggagggtattacaaagtacattctcaagggt-ggggaggatattacaaagtaccttctcaagggtcgggg-ggata
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334471 108 -    350446 gaggatattacaaagtaccttctcaagggt-gg-ggaggatattacaaagcaccttctcaaagatgggggagaatattacaaagtaccttctcaagggtgggggaggata
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979   0 + 155549662 C
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e gorGor5.CYUI01015925v1   360359   0 +    417917 C
e panPan2.chrX             501407   0 + 155392059 C

a score=21396.000000
s hg38.chrX_KI270880v1_alt 281260 24 +    284869 ttacaaagtaccttctcaagggtg
s rheMac8.chrX             174852 24 + 149150640 ttacaaagtaccttctcaagggtg
i rheMac8.chrX             C 0 I 1
s macFas5.chrUn_KE146044    13461 24 +     47233 ttacaaagtaccttctcaagggtg
i macFas5.chrUn_KE146044   C 0 I 1
s chlSab2.chrUn_KE147541v1 266002 24 -    811265 ttacaaagtaccttctcaagggtg
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   334579 24 -    350446 ttacaaagcacattctcaagggtg
i manLeu1.NW_012108508v1   C 0 I 1
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macNem1.NW_012017243v1   465994 25 +  25972781 I
e gorGor5.CYUI01015925v1   360359  0 +    417917 C
e panPan2.chrX             501407  0 + 155392059 C

a score=86226.000000
s hg38.chrX_KI270880v1_alt 281284 203 +    284869 gggatgattttacaaagtaccttcttaagggcagggt-ggatattacaaagtaccttctcaagggtgggggtggatattacaaagtaccttctcaagggt-ggggatgattttacaaagtaccttcttaagggcgggggaggatattacaaagtaccttctcaagtgtgggggtggatattacaaaggacattctcaagggtggg-
s rheMac8.chrX             174877 194 + 149150640 gggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtac-----caagggtggGGA-GGATATTACAAAGTACATTCTCAAGGGTgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagcaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggg
i rheMac8.chrX             I 1 C 0
s macFas5.chrUn_KE146044    13486 194 +     47233 gggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtac-----caagggtgggga-ggatattacaaagtaccttctcaagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggg
i macFas5.chrUn_KE146044   I 1 C 0
s chlSab2.chrUn_KE147541v1 266026 202 -    811265 gggaagatattacaaagtaacttctcaagggtggggggggatattacaaagtaccttctcaagggtgggga-ggatattacaaagtaccttctcaaggat-ggggaggatattacaaagaactttctcaagggt-gggggggatattacaaagaaccttctcaaaggtgggggaggatattacaaagtaccttctcaagggtggg-
i chlSab2.chrUn_KE147541v1 C 0 I 24
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603   1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979   0 + 155549662 C
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macNem1.NW_012017243v1   465994  25 +  25972781 I
e gorGor5.CYUI01015925v1   360359   0 +    417917 C
e panPan2.chrX             501407   0 + 155392059 C

a score=205199.000000
s hg38.chrX_KI270880v1_alt 281487 972 +    284869 gATGATTTTACAAAGTACCTTCTTAAgggcaggggaggatattccaaagtaccttctcaagggt-ggggaggatattacaaagtaccttcttaagggcgggggaggatattacaaagtaccttctcaagggtgggggtggatattagaaagtaccttctcaagggtggggaggaTATTACAAAGTACCTTCTCAAGGGTgggggtggatattacaaagtaccttctcaagggtggg-gatgattttacaaagtaccttcttaagggtgggggtggatattacaaagtaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtggggATGATTttacaaagtaccttcttaagggcagggtggatattacaaagtaccttctcaagggtgggggtggatattacaaagtaccttctcaagggtg-gggatgattttacaaagtaccttcttaagggcaggggaggatattacaaagtaccttctcaagtgtgggggtggatattacaaaggacattctcaagggtggggATGATTTTACAAAGTACCTTCTTAAgggcaggggaggatattccaaagtaccttctcaagggt-ggggaggatattacaaagtaccttcttaagggcgggggaggatattacaaagtaccttctcaagggtgggggtggatattacaaagtaccttcttaagggcaggggaggatattacaaagtaccttctcaagggtgggggtggatattagaaagtaccttctcaagggt-ggggaggatattacaaagtaccttctcaagggtgggggtggatattacaaagtaccttctcaagggtg-gggatgattttacaaagtaccttcttaagggtgggggaggatattacaaagtaccttctcaagggtgggggtggatattacaaaggacattctcaagggtggggAT-gattttacaaagtaccttct--taagggtg
s rheMac8.chrX             175071 926 + 149150640 gaggatattacaaagtagcttctcaagggtgggggaggatattacaaagtagcttctcaagggtaggggaggatattacaaaatacattctcaagggtgggggaggatattacaaagtacattctcaagggtgagggaggatattacaaagtaccttctcaagggtggggaggatattacaaagtaccttctcaagggtgggga-ggatattacaaagcaccttctcaagggtgggagaggatattacaaagtacc-----aagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaattacattctcaagggtggggaggatattacaaagcaccttctcaagggtggggaggatattacaaagcaccttctcaagggtg-gggaggatattacaaattaccttctcaagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagtacattctcaagggtgggggaggatattacaaagtac-----caagggtggggaggatattacaaagtacattctcaagggt-ggggaggatattacaaagcaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtacc-----aagggt-ggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtagcttctcaagggtaggggaggatattacaaaatacattctcaagggtgggggaggatattacaaagtacattctcaagggtgagggaggatattacaaagtaccttctcaagggt-ggggaggatattacaaagcaccttctcaagggtgggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtac-------caagggt-
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    13680 926 +     47233 gaggatattacaaagtagcttctcaagggtgggggaggatattacaaagtagcttctcaagggtgggggaggatattacaaaatacattctcaagggtgggggaggatattacaaagtacattctcaagggtgagggaggatattacaaagtaccttctcaagggtggggaggatattacaaagtaccttctcaagggtgggga-ggatattacaaagcaccttctcaagggtgggggaggatattacaaagtacc-----aagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagtaccttctcaagggtggggaggatattacaaagcaccttctcaagggtggggaggatattacaaagcaccttctcaagggtgagggaggatattacaaagtaccttctcaagggtgagggaggatattacaaagcaccttctcaagggt-ggggaggatattacaaattaccttctcaagggtgggggaggatattacaaagtac-----caagggtggggaggatattacaaagtaccttctcaagggt-ggggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtaccttctcaagggtgggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtacc-----aagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagtaccttctcaagggt-ggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtac-----caagggtgggggaggatattacaaagtac-----caagggt-ggggaggatattacaaagtaccttctcaagggt-ggggaggatattacaaagcacattctcaagggtggggga--atatcacaaagtccattatcacaagggtg
i macFas5.chrUn_KE146044   C 0 I 100
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603   1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 266228  24 -    811265 I
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macNem1.NW_012017243v1   465994  25 +  25972781 I
e gorGor5.CYUI01015925v1   360359   0 +    417917 C
e panPan2.chrX             501407   0 + 155392059 C

a score=8681.000000
s hg38.chrX_KI270880v1_alt 282459 105 +    284869 ggggaggatattacaaagtaccttctcaagggtgggggtggatattacaaagtaccttcttaagggcaggggaggatattacaaagtaccttctcaagggtgggg
s rheMac8.chrX             175997 104 + 149150640 ggGGAGGATATTACAAAGTACCTTCTCAAGGGTgggggaggatattacaaagtaccttctcaagggt-ggggaggatattacaaagcacattctcaagggtgggg
i rheMac8.chrX             C 0 I 3
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603   1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 266228  24 -    811265 I
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macNem1.NW_012017243v1   465994  25 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I
e gorGor5.CYUI01015925v1   360359   0 +    417917 C
e panPan2.chrX             501407   0 + 155392059 C

a score=0.000000
s hg38.chrX_KI270880v1_alt 282564 52 +    284869 atgattttacaaagtaccttcttaagggcgggggaggatattacaaagtacc
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603  1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e cerAty1.NW_012001098v1   327116 344 -   1025902 M
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101  3 + 149150640 I
e macNem1.NW_012017243v1   465994 25 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I
e gorGor5.CYUI01015925v1   360359  0 +    417917 C
e panPan2.chrX             501407  0 + 155392059 C

a score=13441.000000
s hg38.chrX_KI270880v1_alt 282616 185 +    284869 ttctcaagggtgggggtggatattagaaagtaccttctcaagggtggggATGATATTACAAAGTACCTTCTCAAGGGTgggggtggatattacaaagtaccttctcaagggtggggatgattttacaaagtaccttcttaagggcgggggaggatattacaaagtaccttctcaagggtgggggt
s cerAty1.NW_012001098v1   327472 181 -   1025902 TTCTCAAGGGTgggga-ggatattacaaagcacattctcaagggtggggaggatattacaaagtaccttctcaagggtgggga-ggatattacaaagtaccttctcaagggtggggaggatattacaaagcaccttctcaagggtgggg-aggatattacaaagcaccttctcaagggtgggga-
i cerAty1.NW_012001098v1   M 344 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603   1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979   0 + 155549662 C
e chlSab2.chrUn_KE147541v1 266228  24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101   3 + 149150640 I
e macNem1.NW_012017243v1   465994  25 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I
e gorGor5.CYUI01015925v1   360359   0 +    417917 C
e panPan2.chrX             501407   0 + 155392059 C

a score=12797.000000
s hg38.chrX_KI270880v1_alt 282801 51 +    284869 ggatattacaaagtaccttcttaagggcaggggaggatattacaaagtacc
s gorGor5.CYUI01015925v1   360359 51 +    417917 ggatattacaaagtaccttcttaagggcgggggaggatattacaaagtacc
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   327653 51 -   1025902 gaatattacaaagtaccttctcaagggtgagggaggatattacaaagtaca
i cerAty1.NW_012001098v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603  1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             465979  0 + 155549662 C
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101  3 + 149150640 I
e macNem1.NW_012017243v1   465994 25 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I
e panPan2.chrX             501407  0 + 155392059 C

a score=40812.000000
s hg38.chrX_KI270880v1_alt 282852 51 +    284869 ttctcaagggtggGGATG-ATTTTACAAAGTACCTTCTTAAgggcgggggag
s panTro5.chrX             465979 51 + 155549662 ttctcaagggtggggagg-atattacaaagtaccttcttaagggtgggggag
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501407 51 + 155392059 ttctcaagggtggggagg-atattacaaagtaccttcttaagggtgggggag
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360410 51 +    417917 ttctcaagggtggggatg-attttacaaagtaccttcttaagggcgggagag
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   327704 52 -   1025902 ttctcaagggtggggaagaatattacaaagcaccttctcaaagatgggggag
i cerAty1.NW_012001098v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603  1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101  3 + 149150640 I
e macNem1.NW_012017243v1   465994 25 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=79992.000000
s hg38.chrX_KI270880v1_alt 282903 66 +    284869 gatattacaaagtaccttctcaagggtggggagggtgtgttgtacaaaatacattcacaagggtgg
s panTro5.chrX             466030 66 + 155549662 gatattacaaagtaccttctcaagggtggggagggtgtgttgtacaaaatacattcacaagggtgg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501458 66 + 155392059 gatattacaaagtaccttctcaagggtggggagggtgtgttgtacaaaatacattcacaagggtgg
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360461 66 +    417917 gatattacaaagtaccttctcaagggtggggagggtgtgttgtacaaaatacattcacaagggtgg
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   466019 62 +  25972781 gatattacaaagtaccttctcaagggtggggaggatat----tacaaagcacattctcaagggtgg
i macNem1.NW_012017243v1   I 25 C 0
s cerAty1.NW_012001098v1   327756 62 -   1025902 gatattacaaagtaccttctcaagggtggggaggatat----tacaaagcacattctcaagggtga
i cerAty1.NW_012001098v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334603  1 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101  3 + 149150640 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=8892.000000
s hg38.chrX_KI270880v1_alt 282969 5 +    284869 gggac
s panTro5.chrX             466096 5 + 155549662 gggaa
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501524 5 + 155392059 gggaa
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360527 5 +    417917 gggaa
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   466081 5 +  25972781 gggaa
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   327818 5 -   1025902 gggaa
i cerAty1.NW_012001098v1   C 0 C 0
s manLeu1.NW_012108508v1   334604 5 -    350446 gggaa
i manLeu1.NW_012108508v1   I 1 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176101 3 + 149150640 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=42943.000000
s hg38.chrX_KI270880v1_alt 282974 20 +    284869 tatcagaaagtacattatca
s panTro5.chrX             466101 20 + 155549662 tatcagaaagtacattatca
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501529 20 + 155392059 tatcagaaagtacattatca
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360532 20 +    417917 tatcagaaagtacattatca
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176104 20 + 149150640 tatcacaaagtccattatca
i rheMac8.chrX             I 3 C 0
s macNem1.NW_012017243v1   466086 20 +  25972781 tatcacaaagtccattatca
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   327823 20 -   1025902 tatcacaaagtccattatcc
i cerAty1.NW_012001098v1   C 0 C 0
s manLeu1.NW_012108508v1   334609 20 -    350446 tatcacaaagtccattatcc
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266228 24 -    811265 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=882203.000000
s hg38.chrX_KI270880v1_alt 282994 302 +    284869 caagggcggggagggtgtattgtcacaaagtcaattgatcagttagggttgggcaggaacaaatcacaatggtggaatgtcatcagttaagacaggaactggctattttcacttcttttgtgggtcttcaattgcttcaggccacctggatgtatacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacaGGCACTGCTTACTCACTGATGAGTCTCCGTTGGGACTTACTTCCAGGACTCCATCAGCAGGGGATTTTTCTGCTTCAAGGGCTCATGCTGGGCA
s panTro5.chrX             466121 302 + 155549662 cgagggcggggagggtgtattgtcacaaagtcaactgatctgttagggttgggcaggaacaaatcacaatggtcgaatgtcatcagttaaggcaggaaccggctattttcacttcttttgtgggtcttcaattgcttcaggccacctggatgtacacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacaGGCACTGCTTGCTCACTGATGAGTCTCCGTTGGGGCTTACTTCCAGGACTCCCTCAGCAGGGGATTTTTCTGCTTCAAGGGCTCATGCTGAGCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501549 302 + 155392059 cgagggcggggagggtgtattgtcacaaagtcaattgatctgttagggttgggcaggaacaaatcacaatggtcgaatgtcatcagttaaggcaggaaccggctattttcacttcttttgtgggtcttcaattgcttcaggccacctggatgtagacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacaGGCACTGCTTGCTCACTGATGAGTCTCCGTTGGGGCTTACTTCCAGGACTCCCTCAGCAGGGGATTTTTCTGCTTCAAGGGCTCATGCTGAGCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360552 302 +    417917 caagggcagggagggtgcattgtcacaaagtcaattgatcagttagggtggggcaggaacaaatcacaatggtggaatgtcatcagttaaggcaggaactggctattttcacttctttcgtgggtcttcaattgcttcaggccacctggatgtatacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacaGGCACTGCTTGCTCATTGATGAGTCTCCGTTGGGGCTTACTTCCAGGACTCCCTTAGCAGGGGATTTTTCTGCTTCAAGGGCTCATGCTGGGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176124 302 + 149150640 caagggtggggagggtatattgttacaaagtcaactgatcagtaggggtggggcagaaacaattcgcaatggtggaatgtcatcagttaaggcagaaactggctcttttcacttcctgtgcggatcttcagttgcttcaggccatctggatgtatccgtgcaggtcacaggggataggatggctgagcttgggctcagaggcctgacaAACACCGCTTGCTCATCGATGAGTCTCCTTTGGGGCTCACTTCCAGGACTCCCTCGGCTGGGGATTTGGCTGCCTCAAGGGCTCACACTGGGCA
i rheMac8.chrX             C 0 I 154
s macNem1.NW_012017243v1   466106 302 +  25972781 caagggtggggagggtatattgttacaaaatcaactgatcagtaggggtggggcagaaacaattcgcaatggtggaatgtcatcagttaaggcagaaactggctcttttcacttcttgtgcggatcttcagttgcttcaggccatctggatgtatccgtgcaggtcacaggggataggatggctgagcttgggctcagaggcctgacaGACACTGCTTGCTCATCGATGAGTCTCCTTTGGGGCTCACTTCCAGGACTCCCTCGGCTGGGGATTTGGCTGCCTCAAGGGCTCACACTGGGCA
i macNem1.NW_012017243v1   C 0 I 136
s cerAty1.NW_012001098v1   327843 302 -   1025902 caaaggtggggagggtgtattgttacacagccaattgaccagtaggggtggggcagaaacaaatcgcaatggtggaatgtcatcagttaaggcaggaactgacccttttcacttgttgtgcagatcttcagttgcttcaggccatctggatgtatccgtgcaggtcacaggggatgtgatggctgagcttgggctcagaggtctgacaGACACTGCTTGCTCATCGATGAGTCTCCTCTGGGGCTCACTTCCAGGACTCCCTCGGTTGGGGATTTGGCTGCCTCAAGGGCTCACACTGGGCA
i cerAty1.NW_012001098v1   C 0 I 122
s chlSab2.chrUn_KE147541v1 266252 300 -    811265 caagggaagggagggtgtattgttacaaagtcagctgatcagtaggggtgggacagaaacaaatcgcaatggtggaatgtcatcagttaaggcaggaactggctcttttcacttcttgt--ggatcttcagttgcttcaggccatctggatgtatccatgcaggtcacaggggataggatggctgagcttgggctcagaggcctgacaGACACTGCTTGCTCATCGATGAGTCTCCTTTGGGGCTCACTTCCAGGACTCCCTCGGCTGGGGATTTGGCTGCCTCAAGGGCTCACACTGGGCA
i chlSab2.chrUn_KE147541v1 I 24 I 124
s manLeu1.NW_012108508v1   334629 302 -    350446 caaaggtggggagggtatattgttacacagccaattgaccagtaggggtggggcagaaacaaatcgcaatggtggaatgtcatcagttaaggcaggaactgacccttttcacttgttgtgcggatcttcagttgcttcaggccatctggatgtatccgtgcaggtcacaggggataggatggttgagcttgggctcagaggtctgacaGACACTGCTTGCTCATCGATGAGTCTCCTTTGGGGCTCACTTCCAGGATTCCCTCGGTTGGGGATTTGGCTGCCTCAAGGGCTCACACTGGGCA
i manLeu1.NW_012108508v1   C 0 I 136
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=1692.000000
s hg38.chrX_KI270880v1_alt 283296 3 +    284869 CAT
s panTro5.chrX             466423 3 + 155549662 CAT
i panTro5.chrX             C 0 I 120
s panPan2.chrX             501851 3 + 155392059 CAT
i panPan2.chrX             C 0 I 120
s gorGor5.CYUI01015925v1   360854 3 +    417917 CAT
i gorGor5.CYUI01015925v1   C 0 I 119
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334931 136 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266552 124 -    811265 I
e cerAty1.NW_012001098v1   328145 122 -   1025902 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176426 154 + 149150640 I
e macNem1.NW_012017243v1   466408 136 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=0.000000
s hg38.chrX_KI270880v1_alt 283299 3 +    284869 GAA
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334931 136 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e panTro5.chrX             466426 120 + 155549662 I
e chlSab2.chrUn_KE147541v1 266552 124 -    811265 I
e cerAty1.NW_012001098v1   328145 122 -   1025902 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176426 154 + 149150640 I
e macNem1.NW_012017243v1   466408 136 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I
e gorGor5.CYUI01015925v1   360857 119 +    417917 I
e panPan2.chrX             501854 120 + 155392059 I

a score=546.000000
s hg38.chrX_KI270880v1_alt 283302 1 +    284869 T
s panTro5.chrX             466546 1 + 155549662 t
i panTro5.chrX             I 120 C 0
s panPan2.chrX             501974 1 + 155392059 t
i panPan2.chrX             I 120 C 0
s gorGor5.CYUI01015925v1   360976 1 +    417917 t
i gorGor5.CYUI01015925v1   I 119 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334931 136 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e chlSab2.chrUn_KE147541v1 266552 124 -    811265 I
e cerAty1.NW_012001098v1   328145 122 -   1025902 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176426 154 + 149150640 I
e macNem1.NW_012017243v1   466408 136 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=13435.000000
s hg38.chrX_KI270880v1_alt 283303 11 +    284869 GGAAGGGTTGA
s panTro5.chrX             466547 11 + 155549662 ggaagggttga
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501975 11 + 155392059 ggaagggttga
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360977 11 +    417917 gggagggttga
i gorGor5.CYUI01015925v1   C 0 C 0
s cerAty1.NW_012001098v1   328267 11 -   1025902 ggaacggttga
i cerAty1.NW_012001098v1   I 122 C 0
s chlSab2.chrUn_KE147541v1 266676 11 -    811265 ggaagagttga
i chlSab2.chrUn_KE147541v1 I 124 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e manLeu1.NW_012108508v1   334931 136 -    350446 I
e otoGar3.GL873584         360458 200 +  11138919 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176426 154 + 149150640 I
e macNem1.NW_012017243v1   466408 136 +  25972781 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=39346.000000
s hg38.chrX_KI270880v1_alt 283314 18 +    284869 TTCCTCCTGGAGGCGTCG
s panTro5.chrX             466558 18 + 155549662 ttccccctggaggcttcg
i panTro5.chrX             C 0 C 0
s panPan2.chrX             501986 18 + 155392059 ttccccctggaggcttcg
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   360988 18 +    417917 ttcctcctggaggcttcg
i gorGor5.CYUI01015925v1   C 0 C 0
s macNem1.NW_012017243v1   466544 18 +  25972781 ttcctcctggaggatctg
i macNem1.NW_012017243v1   I 136 C 0
s cerAty1.NW_012001098v1   328278 18 -   1025902 ttcctcctggaggctctg
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 266687 18 -    811265 ctcctcctggaggctctg
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   335067 18 -    350446 ttcctcctggaggctctg
i manLeu1.NW_012108508v1   I 136 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e rheMac8.chrX             176426 154 + 149150640 I
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=246526.000000
s hg38.chrX_KI270880v1_alt 283332 88 +    284869 AGGGAGATGCCTCCAAAAGGAGGAACTGACTCTCTTTGACCAACGTCACATGATAGCAA-CCTGCCAGGAACCAGGAACCAGAGACACG
s panTro5.chrX             466576 88 + 155549662 agggagaTGCCTCCAAAAGGAGGAACTGACTCTCTTTGACCAACATCACATGATAGCAA-CCTGCCAGGAACCAGGAACCAGAGACACG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502004 88 + 155392059 agggagaTGCCTCCAAAAGGAGGAACTGACTCTCTTTGACCAACATCACATGATAGCAA-CCTGCCAGGAACCAGGAACCAGAGACACG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361006 88 +    417917 agggagaTGCCTCCAAAAGGAGGAACTGACTCTCTTTGACCAACATCACATGATAGCAA-CCTGCCAGGAACCAAGAACCAGAGACACG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176580 89 + 149150640 aggaagaTGCCTCCAGAAGGAGGAGCTGATGATCTTTGGCCAACACCACATGATAGCAGCCCTGCTGGGAACCAGGAACCAGAGGCACC
i rheMac8.chrX             I 154 C 0
s macNem1.NW_012017243v1   466562 89 +  25972781 aggaagaTGCCTCCAGAAGGAGGAGCTGATGATCTTTGGCCAACACCACATGATAGCAGCCCTGCTGGGAACCAGGAACCAGAGGCACC
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   328296 89 -   1025902 agggagaagcttccaGAAGGAGGAGCTGACTATCTTTGGCCAACACCACATGATAGCAGCCCTGCTGGGAACCAGGAACCAGAGGCACC
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 266705 88 -    811265 aggaagaTGCCTCCAGAAGGAGGAGCTGACTATCGTTGGCCAACACCACATGATAGCAA-CCTGCTGGGAATCAGGAACCAGAGGCACC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   335085 89 -    350446 agggagaagcttccaGAAGGAGGAGCTGACTATGTTTCACCAACACCACATGATAGCAGCCCTGCTGGGAACCAGGAACCAGAGGCACC
i manLeu1.NW_012108508v1   C 0 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M
e macFas5.chrUn_KE146044    14606 100 +     47233 I

a score=77706.000000
s hg38.chrX_KI270880v1_alt 283420 20 +    284869 TATCCAACCAAAAGGCACCT
s panTro5.chrX             466664 20 + 155549662 TATCCAACCAAAAGGCACCT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502092 20 + 155392059 TATCCAACCAAAAGGCACCT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361094 20 +    417917 TATGCAACCAAAAGGCACCT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176669 20 + 149150640 TATCCAACCAACAGGCACCT
i rheMac8.chrX             C 0 I 6
s macFas5.chrUn_KE146044    14706 20 +     47233 TATCCAACCAACAGGCACCT
i macFas5.chrUn_KE146044   I 100 I 6
s macNem1.NW_012017243v1   466651 20 +  25972781 TATCCAACCAACAGGCACCT
i macNem1.NW_012017243v1   C 0 I 6
s cerAty1.NW_012001098v1   328385 20 -   1025902 TATCCAACCAAGAGGCACCT
i cerAty1.NW_012001098v1   C 0 I 6
s chlSab2.chrUn_KE147541v1 266793 20 -    811265 TATCCAACCAAGAGGCACCT
i chlSab2.chrUn_KE147541v1 C 0 I 6
s manLeu1.NW_012108508v1   335174 20 -    350446 TATCCAACCAAGAGGCACCT
i manLeu1.NW_012108508v1   C 0 I 6
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I
e colAng1.NW_012115411v1   460079 7360 +   1230721 M

a score=530350.000000
s hg38.chrX_KI270880v1_alt 283440 135 +    284869 GCCTCTTCCCCAGCTCCTGCTGGTTTGTGGGGCAACCCT---GGGAGTCCTTGTCTTGCAAATGTGTTGTCTAGCTCTCCTCCTGAATGAGGCATCACCTGCATTCTCCACCTGCGTTCTTTGGAAGAGCTTTGCAGC
s panTro5.chrX             466684 135 + 155549662 GCCTCTTCCCCAGCTCCTGCTGGTTTGCGGGGCAACCCT---GGGGGTCCTTGTCTTGCAAATGTGTTGTCTAGCTCTCCTCCTGAATGAGGCGTCACCTGCATTCTCCACCTGCGTTCTTTGGAAGAGCTTTGCAGC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502112 135 + 155392059 GCCTCTTCCCCAGCTCCTGCTGGTTTGCGGGGCAACCCT---GGGGGTCCTTGTCTTGCAAATGTGTTGTCTAGCTCTCCTCCTGAATGAGGCATCACCTGCATTCTCCACCTGCGTTCTTTGGAAGAGCTTTGCAGC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361114 135 +    417917 GCCTCTTCCCCAGCTCCTGCTGGTTTGCGGGGCAACCCT---GGGGGTCCTTGTCTTGCAAATGTGTTGTCTAGCTCTCCGCCTGAATGAGGCATCACCTGCATTCTCCACCTGCGTTCTTTGGAAGAGCTTTGCAGC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176695 122 + 149150640 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGACATCCCT-GGGGGGGTCCCCGTCTTGTAAATGTGTTGTGTAGCTCTCCGTCTGAATGAGGCGTCACTTGCATTCTCCACCT---------------GCTTTGTGGC
i rheMac8.chrX             I 6 C 0
s macFas5.chrUn_KE146044    14732 122 +     47233 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGACATCCCT-GGGGGGGTCCTCGTCTTGTAAATGTGTTGTGTAGCTCTCCGTCTGAATGAGGCGTCACTTGCATTCTCCACCT---------------GCTTTGTGGC
i macFas5.chrUn_KE146044   I 6 C 0
s macNem1.NW_012017243v1   466677 122 +  25972781 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGACATCCCT-GGGGGGGTCCTCGTCTTGTAAATGTGTTGTGTAGCTCTCCGTCTGAATGAGGCGTCACTTGCATTCTCCACCT---------------GCTTTGTGGC
i macNem1.NW_012017243v1   I 6 C 0
s cerAty1.NW_012001098v1   328411 123 -   1025902 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGGCATCCCTGGGGGGGGTCCTCGTCTTGTAAATGTGTTGTGTAACTCTCCGTCTGAATGAGGTGTCACTTGCATTCTCCACCT---------------GCTTTGCGGC
i cerAty1.NW_012001098v1   I 6 C 0
s chlSab2.chrUn_KE147541v1 266819 122 -    811265 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGGCATCCCT-GGGGAGGTCCTCGTCTTGTAAATGTGTTGTCTAGCTCTCCGTCTGAATGAGGCGTCACTTGCATTGTCCACCT---------------GCTTTGCGGC
i chlSab2.chrUn_KE147541v1 I 6 C 0
s manLeu1.NW_012108508v1   335200 122 -    350446 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGGCATCCCT-GGGGGGGTCCTCGTCTTGTAAATGTGTTGTGTAGCTTTCCGTCTGAATGAGGCGTCACTTGCATTCTCCACCT---------------GCTTTGTGGC
i manLeu1.NW_012108508v1   I 6 C 0
s colAng1.NW_012115411v1   467444 120 +   1230721 GCCTCTTCCCCAGCTCCTGCTGCTTTGCAGGCCATCCCT---GGGGGTCCTTCTCTTGTAAATGTGTTGCCTAGCTCTCCTCCTGAATGAGGCATCACTTGCCTTCTCCACCT---------------GCTTTGCAGC
i colAng1.NW_012115411v1   M 7360 C 0
e canFam3.chrX             396589 1260 + 123869142 I
e otoGar3.GL873584         360458 200 +  11138919 I

a score=205413.000000
s hg38.chrX_KI270880v1_alt 283575 49 +    284869 CTCTCAGGAGAGCTGCTCACCTGTCCCCCCTGCC-TGCTCATTG-CCCTGT
s panTro5.chrX             466819 50 + 155549662 CTCTCAGGAGAGCTGCTCACCTGTCCCCCCTGCCCTGCTCATTG-CCCTGT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502247 50 + 155392059 CTCTCAGGAGAGCTGCTCACCTGTCCCCTCTGCCCTGCTCATTG-CCCTGT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361249 49 +    417917 CTCTCAGGAGAGCTGCTCACCTGTCCCCCCTGCC-TGCTCGTTG-CCCTGT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             176817 50 + 149150640 CTCTCAGGAGAGCTGCTCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i rheMac8.chrX             C 0 I 1646
s macFas5.chrUn_KE146044    14854 50 +     47233 CTCTCAGGAGAGCTGCTCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i macFas5.chrUn_KE146044   C 0 I 6
s macNem1.NW_012017243v1   466799 50 +  25972781 CTCTCAGGAGAGCTGCTCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i macNem1.NW_012017243v1   C 0 I 6
s cerAty1.NW_012001098v1   328534 50 -   1025902 CTCTCAGGAGAGCTGCTCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i cerAty1.NW_012001098v1   C 0 I 6
s chlSab2.chrUn_KE147541v1 266941 50 -    811265 CTCTCAGGAGAGCTGCCCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i chlSab2.chrUn_KE147541v1 C 0 I 6
s manLeu1.NW_012108508v1   335322 50 -    350446 CTCTCAGGAGAGCTGCTCACCTGTCCTCCCTGCCCTGCTCATTG-CTCTGT
i manLeu1.NW_012108508v1   C 0 I 6
s colAng1.NW_012115411v1   467564 20 +   1230721 CTGTCAGGAGAGCTGCTCAC-------------------------------
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         360658 47 +  11138919 CTCTCAGGAAGGAAACCCTTC--TCTTTCTTGCC--TCACATTGCCCCTGT
i otoGar3.GL873584         I 200 I 6
e canFam3.chrX             396589 1260 + 123869142 I

a score=134646.000000
s hg38.chrX_KI270880v1_alt 283624 30 +    284869 GCAAACCAGAGTCCTGAGACACTCCCCAAA
s panTro5.chrX             466869 30 + 155549662 GCAAACCAGAGTCCTGCGATGCTCCCCAAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502297 30 + 155392059 GCAAACCAGAGTCCTGCGATGCTCCCCAAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361298 30 +    417917 GCAAACCAGAGTCCTGAGACACTCTCCAAA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             178513 30 + 149150640 CCAAACCAGTGTCCTGCGAGGCTCCCCGAA
i rheMac8.chrX             I 1646 C 0
s macFas5.chrUn_KE146044    14910 30 +     47233 CCAAACCAGTGTCCTGCGAGGCTCCCCGAA
i macFas5.chrUn_KE146044   I 6 C 0
s macNem1.NW_012017243v1   466855 30 +  25972781 CCAAACCAGTGTCCTGCGAGGCTCCCCGAA
i macNem1.NW_012017243v1   I 6 C 0
s cerAty1.NW_012001098v1   328590 30 -   1025902 CCAAACCAGTGTCCTGCGACGCTCCCTGAA
i cerAty1.NW_012001098v1   I 6 C 0
s chlSab2.chrUn_KE147541v1 266997 30 -    811265 CCAAACCAGCGTCCTGCAAGGCTCCCCGAA
i chlSab2.chrUn_KE147541v1 I 6 C 0
s manLeu1.NW_012108508v1   335378 30 -    350446 CCAAACCAGCGTCCTGCGAGGCTCCCCGAA
i manLeu1.NW_012108508v1   I 6 C 0
s colAng1.NW_012115411v1   467584 28 +   1230721 --AAACCAGTGTCCCGCGACACTTCCCGAA
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         360711 30 +  11138919 ATGAACCAGGGCCCTGTGATGCTCTCCAAT
i otoGar3.GL873584         I 6 C 0
e canFam3.chrX             396589 1260 + 123869142 I

a score=3048145.000000
s hg38.chrX_KI270880v1_alt 283654 617 +    284869 GGTTGGTCC--CTACCAACCCAGGTTGCCTCTTGTTTCTTGCAACAAGACAGCAAAAGACGCTGCAGAAGGATCGCTTACCTTGTTTGGAAAGAGAGCCCACCCTT-TCACCTCGCTGGCAAACATTTTCTTGTGTCCTAATGAGAACCCCAAGGAAT--ACCCCGGGATGTGAGGAGAGGGAGCGTCCGCCCGGCGGCCCGCCCCAAGGAGCC--TGAGGCTGT--CCTGCACACATCACCACACACACTCTCTGCATTGCAGTCCCATGTTTATA-GAGAAGATTACAGGTGAGTTTCCAAAATCCCAGCCCATGCTGCCCCTACCTGACGATGTTTGATTTCCGAATTCCTTTAATTTCAGCAAATGGATATTGGCTGTGGGTCAGCATAGATTTT----------TTCCGGTTATTTAAACAACATTTCAGATGCTTTTCCTGGCATCATTAGC-TGAATGCTTCTACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAAGAGAGTGAACA--GGACGTTC-ACTTGTTACCGTATCTCCTCGCTTCTCAACCACCACCCCTGAAATTCGCAGACTGTCA--CTGGGGAGCCTGTGAACGTGGCTGAACGCAAACGGATTTAAAACTTGACAGGTGTT
s panTro5.chrX             466899 619 + 155549662 GGCTGGTCC--CTACCAACCCAGGTTGCCTCTTACTTCTTGCAACAAGACAGCAAAAGACGCTGCAGAAGGATCGCTTACCTTGTTTGGAAAGAGTGCCCACCCTT-TCACCTCGCTGGCAAACATTTTCTTGTGTCCTAATGAGAACCCCAAGGAAT--ACCCCGGGATGTGAGGAGAGGGAGCGTCCGCCCGGCGGCCCGCCCCAAGGAGCC--TGAGGCTGT--CCTGCACACATCACCACACACACTCTCTGCATTGCAGTCCCATGTTTATA-GAGAAGATTACAGGTGAGTTTCCAAAATCCCAGCCCATGCTGCCCCTACCTGACGATGTTTGATTTCCGAATTCCTTTAATTTTGGCAAATGGATATTGGCTGTGGGTCAGCATAGATTTT----------TTCCGGTTATTTAAACAACCTTTCAGATGCTTTTCCTGGCATCATTAGC-TGAATGCTTCTACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAAGAGAGTGAACA--GGACGTTC-ACTTGTTACCGTGTCTCCTGGCTTCTCAACCACCACCCCTGAAATTCGCAGAGTGTCACTCTGGGGAGCCTGTGAACGTGGCTGAACGCAAATGGATTTAAAACTTGACAGGTGTT
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502327 619 + 155392059 GGCTGGTCC--CTACCAACCCAGGTTGCCTCTTACTTCTTGCAACAAGACAGCAAAAGACGCTGCAGAAGGATCGCTTACCTTGTTTGGAAAGAGAGCCCACCCTT-TCACCTCGCTGGCAAACATTTTCTTGTGTCCTAATGAGAACCCCAAGGAAT--ACCCCGGGATGTGAGGAGAGGGAGCGTCCGCCCGGCGGCCCGCCCCAAGGAGCC--TGAGGCTGT--CCTGCACACATCACCACACACACTCTCTGCATTGCAGTCCCATGTTTATA-GAGAAGATTACAGGTGAGTTTCCAAAATCCCAGCCCATGCTGCCCCTACCTGACGATGTTTGATTTCCGAATTCCTTTAATTTTGGCAAATGGATATTGGCTGTGGGTCAGCATAGATTTT----------TTCCGGTTATTTAAACAACCTTTCAGATGCTTTTCCTGGCATCATTAGC-TGAATGCTTCTACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAAGAGAGTGAACA--GGACGTTC-ACTTGTTACCGTGTCTCCTGGCTTCTCAACCACCACCCCTGAAATTCGCAGAGTGTCACTCTGGGGAGCCTGTGAACGTGGCTGAACGCAAATGGATTTAAAACTTGACAGGTGTT
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361328 618 +    417917 GGCTGGTCC--CTACCAACCCAGGTTGCCTCTTATTTCTTGCAACAAGACAGCAAAAGACGCTGCAGAAGGATCGTTTACCTTGTTTGGAAAGAGAGCCCACCCTT-TCACCTCGCTGGCAAACATTTTCTTGTGTACTAATGAGAACCCCAAGGAAT--ACCCCGGGATGTGAGGAGAGGGAGCGTCCGCCCGGCGGCCTGCCCCAAGGAGCC--TAAGTCTGT--CCTGCACACATCACCACACACACTCTCGGCATTGCAGTCCCATGTTTATA-GAGAAGATTACAGGTGAGTTTCCAAAATCCCAGCCCACGCTGCCCCTACCTGACGATGTTTGATTCCCGAATTCCTTTAATTTTGGCAAATGGATATTGGCTGTGGGTCAGCATAGA-TTT----------TTCTGGATATTTAAACAACATTTCAGATGCTTTTCCTGGCATCATTAGC-TGAATGCTTCTACTGGACAGCTGGAATCATTCAAACATCTGAGA------CAAGAGAGTGAACA--GGACGTTC-ACTTGTTACCGTGTCTCCTGGCTTCTCAATCACCACCCCTGAAATTCGCAGAGTATCACTCT-GGAAGCCTGTGAACGTGGCTGAACGCAAATGGATTTAAAACTTGACAGGTGTT
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             178543 622 + 149150640 AGCTGGTCC--CTACCAACCCTGGTTGCCTCTTATTTCTTGCAACAAGACAGGAAAGGACGCTGCAGAGGGATGACATACCTTGTTTGGGAAGGAAGCCCACCGTT-CCGCCTCGCTGGCAAACATTTTCTTGTGCCCTAATGAGAACCCCAAGGAATATACCCCGGGATGTGAGGAGAGGTAGCGTCCGCCCATTGGCCTGCCCCAAGGAGCC--TCAGGCTGTGTCCTGCACACATCAC--CACACGCTCTCTGCACTCCAGTCCCGTGTCTATA-GGAGAGATTACAGACGAGTTTCCGACACCCCAGCCCACGCTGCCCCTACCTGATGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTTTTCCAGGCCTCATTAGCTTTAACGCTTCCACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAGGGGAGTGAACACAGGATGTTC-GCCTGTTACCGCGTCTCCTCGCTTCTCAACCATCAGCCCTGAAATGCACACGGTGTCACCCTGGGGAGCCTGTGAACGCGGCTGAACGCTAATGGGTTTAAAATTTGACAGGTGTT
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    14940 591 +     47233 AGCTGGTCC--CTACCAACCCCGGTTGCCTCTTATTTCTTGCAACAAGACAGGAAAGGACGCTGCAG-------------------------------CCACCGTT-CCGCCTCGCTGGCAAACATTTTCTTGTGCCCTAATGAGAACCCCAAGGAATATACCCCGGGATGTGAGGAGAGGTAGCGTCCGCCCATTGGCCTGCCCCAAGGAGCC--TCAGGCTGTGTCCTGCACACATCAC--CACACGCTCTCTGCACTCCAGTCCCGTGTCTATA-GGAGAGATTACAGACGAGTTTCCGACACCCCAGCCCACGCTGCCCCTACCTGATGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTTTTCCAGGCCTCATTAGCTTTAACGCTTCCACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAGGGGAGTGAACACAGGATGTTC-GCCTGTTACCGCGTCTCCTCGCTTCTCAACCGTCAGCCCTGAAATGCACACGGTGTCACCCTGGGGAGCCTGTGAACGCGGCTGAACGCTAATGGGTTTAAAATTTGACAGGTGTT
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   466885 591 +  25972781 AGCTGGTCC--CTACCAACCCCGGTTGCCTCTTATTTCTTGCAACAAGACAGGAAAGGACGCTGCAG-------------------------------CCACCGTT-TCGCCTCGCTGGCAAACATTTTCTTGTGCCCTAATGAGAACCCCAAGGAATATACCCCGGGATGTGAGGAGAGGTAGCGTCCGCCCATTGGCCTGCCCCAAGGAGCC--TCAGGCTGTGTCCTGCACACATCAC--CGCACGCTCTCTGCACTCCAGTCCCGTGTCTATA-GGAGAGATTACAGACGAGTTTCCGACACCCCAGCCCACGCTGCCCCTACCTGATGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTTTTCCAGGCCTCATTAGCTTTAACGCTTCCACT-GACAGCTGGAATCATTCAAACATCTGAGA------CAGGGGAGTGAACACAGGATGTTG-GCCTGTTACCGCGTCTCCTCGCTTCTCAACCGTCAGCCCTGAAATGCACACAGTGTCACCCTGGGGAGCTTGTGAACGCGGCTGAACGCTAATGGGTTTAAAATTTGACAGGTGTT
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   328620 625 -   1025902 AGCTGGTCCCTCTACCAACCCCGGTTGCCTCTTATTTCTTGCAACACGACAGGAAAGGACACTGCAGAAGGATGACGTACCTTGTTTGGGAAGGAAGCCCACCCTT-TCGCCTCGCTGGCAAACATTTTCTTGTGCCCTAATGAGAACCCCAAGGAATATACCCCGGGATGTGAGGAGAGGTAGCGTCCGCCCGTTGGCCTGCCCCAAGGAGCC--TGAGGCTGTGTCCTGCACACATCAC--CACACGCTCTCTGCACTCCAGTCCCGTGTCTATAGGGGGAGATTACAGACGAGTTTCCAACACCCCAGCCCACGCTGCCCCTACCTGACGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTCTCAGATGCTTTTCCAGGCCTCATTAGCTTTAACGCTTCCACT-GACAGCTGGAATCATTCAAACACCCGAGA------CAGGGGAGTGAACACAGGATGTTC-GCTTGTTACCGCGTCTCCTCGCTTCTCAACCATCAGCCCTGAAATGCACACGGTGTCACCCTGGGGAGCCTGTGAACGCGGCTGAACGCTAATGGGTTTAAACCTTGACAGGTGCT
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 267027 587 -    811265 AGCTGGTCC--CTACCAAGCCCGGTTGCCTCTTATTTCTTGCAACAAGACAGGAAAGGACGCTGCAGAAGGACGACTCACCTTGTTTGGAAAGGAAGCCCACCCTT-TCGCCTCGCTGGCAAACATTTTCTTGTGCCCTAATGAGAACCCCAAGGAATAGACCCCGGGATGTGAGGAGAGGTAGAATCCGCCCGTTGGCCAGCCCCAAGGAGCC--TGAGGCTGT--------------------------------------GTCCCGTGTCTATAGGGGGAGATTACAGGCGAGTTTCCAACACCCCAGCCCACGCTGCCCCTACCTGACGGTGTTTGATTTCTCAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTCTTCCAGGCCTCATTAGCTTTAACGCTTCCACT-GACAGCTGGAATCATTCGAACACCCGAGA------CGAGGGAGTGAACACAGGACGTTC-GCTTGTTACCGCGTCTCCTCGCTTCTCAACCATCAGCCCTGAAATGCGCACGGTGTCACCCTGGGGAGCCTGTGAACGCGGCTGAACGCCAATGGATTTAAAACTTGACAGGTGTT
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   335408 623 -    350446 AGCTGGTCC--CTACCAACCCCGGTTGCCTCTTATTTCTTGCAACAAGACAGGAAAGGACACTGCAGAAGGATGACGTACCTTGTTTGGGAAGGAAGCCCACCCTT-TCGCCTCGCTGGCAAACAGTTTCTTGTGCCCTAATGAGAACCCCAAGGAATATACCCCGGGATGTGAGGAGTGGTAGCGTCTGGCCGTTGGCCTGCCCCAAGGAGCC--CGAGGCTGTGTCCTGCACACATCAC--CACACGCTCTCTGCACTCCAGTCCCGTGTCTATAGGGGGAGATTACAGACGACTTTCCAACACCCCAGCCCACGCTGCCCCTACCTGACGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATGTGGGCTGGGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTTTTCCAGGCCTCATTAGCTTTAACGCTTCTACT-GACAGCTGGAATCATTCAAACACCCGAGA------CAGGGGAATGAACACAGGATGTTC-GCTTGTTACCGCGTCTCCTCGCTTCTCAACCATCAGCCCTGAAATGCACACGGTGTCACCCTGGGGAGCCTGTGAACGCGGCTGAACGCTAATGGGTTTAAAACTTGACAGGTGCT
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   467612 606 +   1230721 AGCTGGTCTCCCTACCAACCCCGGTTGCCTCTTATTTCTTGCCACAAGACAGCAAAGGA-------------TGACTTACCTTGTTTAGAAAGAAAGCCCACCCTT-TCGCCTCACTGGCAAGCATTTTCTTGTGTCCTAATGAGAACCCCGAGGAAT--ACTCCGGGATGTGAGGAGAGGTAGCGTCCGCCCATTGGCCGGGCCCAAGGAGCC--TGAGGCTGT--CCTGCCCACATCAC--CACAGGCTCTCTGCGCTCCGGTCCCACGTTTCTA-GGGGAGATTGCAGGCGAGTTTGCAACAGCCCAGCCCACGCTGCCCGTACCTCATGGTGTTTGATTTCTGAATTCCTTTAATTTGGGCAAATGGATCTGGGTTGTGGGTCAGTGTCGA--TT----------TTCTGGTTATTTAAACAACGTTTCAGATGCTCTTCCCGGCCTCGTTAGC-TTAACGCTTCCACT-GACAGCTGGGATCATTCGAACACCCGAGA------CGAGGGATGGAACACGGGACGTTC-GCTGGTCACCGCGTCTCCTCGCTTCTCAACCATCAGCCCTGAAATGCGCAGGGTGTGACCCTGGGGAGCCTGTGAACGCGGCTGCACGCAGATGGGCTGAAAACTTGACAGGTGTT
i colAng1.NW_012115411v1   C 0 I 66
s otoGar3.GL873584         360741 590 +  11138919 TTCTGAGCA--CTGCCAACCCTGGTAGCATCTTATTCCTTCCAAAAAGACAACAAAGAACATTACAGAGTGATGGCTTACCTTGTTTGGGAAGGAAACCCACCCTT-TTGCCTTGCTGGCAAACATCTTCTTGTGTTCTAATGAGAACCCCGAGGAAT--ACCCAGCAAGGAGAGGAGAGGAGTCGTCC------------ACCCCACGGAGCC--CGCGGCTGC--CCTTCAGTCATCAC--TCCAGACTCCCCTCGCTAGAGCCAC----------------ATTACAGGTGAGTTTCCAAAATCCCATTCTGT--------CACCCGAAGACTTTTGATTTCTGATTTCCTTTAATTTGGGCAAATGGGTATTGGCTGCGGGTCAGCATAGA--TTCCCCTCCCCACCCCAGTTATTTAGATAACGTTTCTCATGATTTCCCCTGGATCATTAGT-TTAATTCCTCCACT-GTCAGGTGGAATCATTCACACGCTAAAGA------CAACAGAGGAAATA--GGATCTTT-GCTTGTTTCTGCGTCTCTTGCCTTACCGACTGTCGCCCCCGAAATGTGCTCAGTGTCACTCTGGGGAACCGATGAACTCGGCTTAACACAAATGGATTTTACACTTTACAGGTGTT
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             397849 597 + 123869142 GGCAAGTTC--TCACCAGGCT-GGTAGCATGTTGTTTCTTACAACAAGGCAACGGAGAAGAGTATCGAGCTGTGGGTTACCTCGTTCAGAAGGGAAGCCCATGCTCATGAACTGTCCGGCAAACACTTCCCTGAGACCTAATGAGACCCTCAAGGAGG--A---------GAAATAAGAGGGTGCGTCCACCCAGCAGCCCACCCCATGGAGCCCACGTGGCTGTGGC---------------CGCCCTCCTTCTTCGCCCAAGTGCCACCGTTCCA-CCG-----TACAGGTGAGTTTCCAGACTCCCAGCCATTTCTGTC---ACCT-ACAGTCTCTGATTTCTCATTTCCTTTAATTTGGGTAAATGGGTATTGGCTGAGGGTCAGCATAGA--TT----------TTCCGGTTATTTAAATAACGTTTCACATTATTTCCCAAGGATCATTAGT-TACATTCTTCAACT-GTCAGGTGGAATGGTTTAAAAAAAAAAAAAAAACCCAGACAACAGAACAGGAGGCGCCCTGCTTGATGCTCTGTCTTTTCGTCTCCCGTCCATCACCCCTGAAATGTTTGGGGTGTCACTTGACGGAGCCTGTGAACTCAGCTTCGTGCAAATGGGTTTTAAATTTTACAGATGTT
i canFam3.chrX             I 1260 C 0

a score=121439.000000
s hg38.chrX_KI270880v1_alt 284271 30 +    284869 TCCAGCATGGAAAGGAACAAGGAC-TATAAC
s panTro5.chrX             467518 30 + 155549662 TCAAGCATGGAAAGGAATAAGGAC-TATAAC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502946 30 + 155392059 TCAAGCATGGAAAGGAACAAGGAC-TACAAC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361946 30 +    417917 TCAAGCATGGAAAGGAACAAGGAC-TATAAC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179165 30 + 149150640 TCAAGCACGGCGAGGAACCAGCAC-TAGAAC
i rheMac8.chrX             C 0 I 22
s macFas5.chrUn_KE146044    15531 30 +     47233 TCAAGCACGGCGAGGAACCAGCAC-TAGAAC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   467476 30 +  25972781 TCAAGCACGGCGAGGAACCAGCAC-TAGAAC
i macNem1.NW_012017243v1   C 0 I 23
s cerAty1.NW_012001098v1   329245 30 -   1025902 TCAAGCACGGCGAGGAACCAGCAC-TAGAAC
i cerAty1.NW_012001098v1   C 0 I 11
s chlSab2.chrUn_KE147541v1 267614 30 -    811265 TCAAGCACGGCGAGGAACCAGCAC-TGGAAC
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   336031 30 -    350446 TCAAGCACGGCGAGGAACCAGCAC-TAGAAC
i manLeu1.NW_012108508v1   C 0 I 11
s otoGar3.GL873584         361331 31 +  11138919 TCTGGCACTGAAAGGAACCAGGGTGTGTAAC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398446 31 + 123869142 TCCGGCACTGAGAGGAACCAGGACGTGTAAC
i canFam3.chrX             C 0 C 0
e colAng1.NW_012115411v1   468218 66 +   1230721 I

a score=-3177.000000
s hg38.chrX_KI270880v1_alt 284301 15 +    284869 GGCGaataataataa
s panTro5.chrX             467548  9 + 155549662 GGTG------aataa
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502976 15 + 155392059 GGCGaataataataa
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361976  9 +    417917 GGCG------aataa
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15561  6 +     47233 ---------CAAGAG
i macFas5.chrUn_KE146044   C 0 I 5
s chlSab2.chrUn_KE147541v1 267644  6 -    811265 ---------CAAGAA
i chlSab2.chrUn_KE147541v1 C 0 I 8
s otoGar3.GL873584         361362  3 +  11138919 ------------TGA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398477  3 + 123869142 ------------TGA
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   336061 11 -    350446 I
e cerAty1.NW_012001098v1   329275 11 -   1025902 I
e colAng1.NW_012115411v1   468218 66 +   1230721 I
e rheMac8.chrX             179195 22 + 149150640 I
e macNem1.NW_012017243v1   467506 23 +  25972781 I

a score=326.000000
s hg38.chrX_KI270880v1_alt 284316 13 +    284869 -taataa--taataat
s panTro5.chrX             467557 13 + 155549662 -taataa--taataat
i panTro5.chrX             C 0 C 0
s panPan2.chrX             502991 13 + 155392059 -taataa--taataat
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361985 13 +    417917 -taataa--taataat
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15572 10 +     47233 ----TAA--TAACAAG
i macFas5.chrUn_KE146044   I 5 I 2
s cerAty1.NW_012001098v1   329286 10 -   1025902 ----TAA--TAATAAG
i cerAty1.NW_012001098v1   I 11 I 1
s chlSab2.chrUn_KE147541v1 267658  7 -    811265 ---------TAATAAG
i chlSab2.chrUn_KE147541v1 I 8 C 0
s manLeu1.NW_012108508v1   336072 12 -    350446 ----TAATATAATAAG
i manLeu1.NW_012108508v1   I 11 C 0
s otoGar3.GL873584         361365 13 +  11138919 -GAAAGA--AAGGAAA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398480 13 + 123869142 GGAGGGG--AAAAAA-
i canFam3.chrX             C 0 C 0
e colAng1.NW_012115411v1   468218 66 +   1230721 I
e rheMac8.chrX             179195 22 + 149150640 I
e macNem1.NW_012017243v1   467506 23 +  25972781 I

a score=4095.000000
s hg38.chrX_KI270880v1_alt 284329 1 +    284869 a
s panTro5.chrX             467570 1 + 155549662 a
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503004 1 + 155392059 a
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   361998 1 +    417917 a
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179217 1 + 149150640 A
i rheMac8.chrX             I 22 C 0
s cerAty1.NW_012001098v1   329297 1 -   1025902 A
i cerAty1.NW_012001098v1   I 1 C 0
s chlSab2.chrUn_KE147541v1 267665 1 -    811265 A
i chlSab2.chrUn_KE147541v1 C 0 I 1
s manLeu1.NW_012108508v1   336084 1 -    350446 A
i manLeu1.NW_012108508v1   C 0 I 1
s otoGar3.GL873584         361378 1 +  11138919 A
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398493 1 + 123869142 A
i canFam3.chrX             C 0 C 0
e colAng1.NW_012115411v1   468218 66 +   1230721 I
e macNem1.NW_012017243v1   467506 23 +  25972781 I
e macFas5.chrUn_KE146044    15582 2 +     47233 I

a score=1749.000000
s hg38.chrX_KI270880v1_alt 284330 1 +    284869 a
s panTro5.chrX             467571 1 + 155549662 a
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503005 1 + 155392059 a
i panPan2.chrX             C 0 I 172
s gorGor5.CYUI01015925v1   361999 1 +    417917 a
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179218 1 + 149150640 G
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    15584 1 +     47233 G
i macFas5.chrUn_KE146044   I 2 C 0
s macNem1.NW_012017243v1   467529 1 +  25972781 G
i macNem1.NW_012017243v1   I 23 C 0
s cerAty1.NW_012001098v1   329298 1 -   1025902 G
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 267667 1 -    811265 G
i chlSab2.chrUn_KE147541v1 I 1 C 0
s manLeu1.NW_012108508v1   336086 1 -    350446 G
i manLeu1.NW_012108508v1   I 1 C 0
s otoGar3.GL873584         361379 1 +  11138919 A
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398494 1 + 123869142 A
i canFam3.chrX             C 0 C 0
e colAng1.NW_012115411v1   468218 66 +   1230721 I

a score=250926.000000
s hg38.chrX_KI270880v1_alt 284331 62 +    284869 AAGACAAATTAGGGATCAAGATCCAGTCTGTTTTTGTCTCATTTATAGTCTTTTCTCCAAGA
s panTro5.chrX             467572 62 + 155549662 AAGACAAATTAGGGATCAAGATCCAGTCTGTTTTTGTCTCATTTATAGTCTTTTCTACAAGA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503178 62 + 155392059 AAGACAAATTAGGGATCAAGATCCAGTCTGTTTTTATCTCATTTATAGTCTTTTCTCCAAGA
i panPan2.chrX             I 172 C 0
s gorGor5.CYUI01015925v1   362000 62 +    417917 AAGACAAATTAGGGATCAAGATCCAGTCTGTTTTTGTCTCATTTATAGTCTTTTCTGCAAGA
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179219 62 + 149150640 AAGACAAATGAGGGATCCATAGCCACTCTGGTTTTGTCTCACTTACCATGTTTTCTCCAAGA
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    15585 62 +     47233 AAGACAAATGAGGGATCCATAGCCACTCTGGTTTTGTCTCACTTAGCATGTTTTCTCCAGGA
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   467530 62 +  25972781 AAGACAAATGAGGGATCCATAGCCACTCTGGTTTTGTCTCACTTACCATGTTTTCTCCAGGA
i macNem1.NW_012017243v1   C 0 C 0
s cerAty1.NW_012001098v1   329299 62 -   1025902 AAGACAAATGAGGGATCCACAGCCACTCTGGTGTTGTCTCACTTACCATGTTTTCTCCAAGA
i cerAty1.NW_012001098v1   C 0 C 0
s chlSab2.chrUn_KE147541v1 267668 58 -    811265 AAGACAAATGAGGAATCCACAGC----CTGGTTTTGTCTCACTTACCTTCTTTTCTCCAAGA
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   336087 62 -    350446 AAGACAAATGAGGGATCCACAGCCACTCTGGTGTTGTCTCACTTACCATGTTTTCTCCAAGA
i manLeu1.NW_012108508v1   C 0 C 0
s otoGar3.GL873584         361380 56 +  11138919 AAGACAAATTAAGGAT------CTACTCTATTTTTGTCTCATTTACAATCTTTTCCCCAAGA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398495 56 + 123869142 GTGACAAATTAAGGAT------CTGCTCTATTTTTGTCTCATTTAGAATATTTTCCCCGAGA
i canFam3.chrX             C 0 C 0
e colAng1.NW_012115411v1   468218 66 +   1230721 I

a score=798051.000000
s hg38.chrX_KI270880v1_alt 284393 165 +    284869 GGTTGTAGGCTGGTACCATTTCACTAGGTTAAAAGCCTACGGTGTCAAGAGGT----------------------------------------------------------------------------------------GCT--AAGCTTTGCTGCTGTCTCTTGCTTGGCAAG-------ACAAGC-------TCCGAGTCTTTCTGGAACTGACAA-----TTGTGTGTGGGCA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGCA------TAGGGG-
s panTro5.chrX             467634 165 + 155549662 GGTTGTAGGCTGGTACCATTTCACTAGGTTAAAAGCCTACGGTGTCAAGAGGT----------------------------------------------------------------------------------------GCT--AAGCTTTGCTGCTGTCTCTTGCTTGGCAAG-------ACAAGC-------TCCGAGTCTTTCTGGAACCGACAA-----TTGTGTGTGGGCA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGCA------TATGGG-
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503240 165 + 155392059 GGATGTAGGTTGGTACCATTTCACTAGGTTAAAAGCCTACGGTGTCAAGAGGT----------------------------------------------------------------------------------------GCT--AAGCTTTGCTGCTGTCTCTTGCTTGGCAAG-------ACAAGC-------TCCGAGTCTTTCCGGAACTGACAA-----TTGTGTGTGGGCA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGCA------TAGGGG-
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362062 165 +    417917 GGTTGTAGGCTGGTACCATTTCACTAGGTTAAAAGCCTACGGTGTCAAGAGGT----------------------------------------------------------------------------------------GCT--AAGCTTTGCTGCTGTCTCTTGCTTGGCAAG-------ACAAGC-------TCCGAGTCTTTCTGGAACTGACAA-----TTGTGTGTGAGCA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGCA------TAGGGG-
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179281 165 + 149150640 GTTTGTAGGCTGGTCCCATCTCACTAGATTAAAAGCTCACGGTGTCAAGAGAC----------------------------------------------------------------------------------------TGT--GAGCTTGGCTGTTGTCTCTTGCCTGGCAAG-------ACAAGC-------TCTGAGTCTTTCCGGAACCGACAA-----TCGTGTGTGGGTA-----TTTCCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i rheMac8.chrX             C 0 I 119
s macFas5.chrUn_KE146044    15647 165 +     47233 GTTTGTAGGCTGGTCCCATCTCACTAGATTAAAAGCTCACGGTGTCAAGAGAC----------------------------------------------------------------------------------------GGT--GAGCTTGGCTGTTGTCTCTTGCCTGGCAAG-------ACAAGC-------TCTGAGTCTTTCCAGAACCGACAA-----TCGTGTGTGGGTA-----TTTCCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i macFas5.chrUn_KE146044   C 0 I 7
s macNem1.NW_012017243v1   467592 165 +  25972781 GTTTGTAGGCTGGTCCCATCTCACTAGATTAAAAGCTCACGGTGTCAAGAGAC----------------------------------------------------------------------------------------GGT--GAGCTTGGCTGTTGTCTCTTGCCTGGCAAG-------ACAAGC-------TCTGAGTCTTTCCGGAACCGACAA-----TCGTGTGTGGGTA-----TTTCCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i macNem1.NW_012017243v1   C 0 I 119
s cerAty1.NW_012001098v1   329361 167 -   1025902 CGTTGGAGGCTGGTCCCATCTCACTCGGTTAAAAGCTCACGGTGTCAAGAGAC----------------------------------------------------------------------------------------GGTGAGAGCTTGGCTATTGTCTCTTGCCTGGCAAG-------ACAAGC-------TCTGAGTCTTTCCGGAACCCACAA-----TCGTGTGTGGGTG-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i cerAty1.NW_012001098v1   C 0 I 119
s chlSab2.chrUn_KE147541v1 267726 165 -    811265 GTTCGTAGGCTGGTCCCATTTCACTCGGTTAAAAGCTTACGGTGTCAAGAGAC----------------------------------------------------------------------------------------GGT--GAGCTTGGCTGTTGTCTCTTGCCCGGCAAG-------ACAAGC-------TCTGAGTCTTTCCGGAACCGACAA-----TCGTGTGTGGGTA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i chlSab2.chrUn_KE147541v1 C 0 I 7
s manLeu1.NW_012108508v1   336149 253 -    350446 CGTTGGAGGCTGGTTCCATTTCACTGGGTTAAAAGCTCACGGTGTCAAGAGACGGTGAGAGCTTGGCTGTTGTCTCTTGCCTCCAAGACGTTGGAGGCTGGTTCCATTTCACTTGGTTAAAAGCTTATGGTGTCAACAGGTGGT--GAGCTTGGCTGTTGTCTCTTGTCTGGCAAG-------ACAAGC-------TCTGAGTCTTTCCGGAACCGACAA-----TCGTGTGTGGGTA-----TTTTCTTGTTTCTGGGGT----TCTTTGCATGTG------TAGGGG-
i manLeu1.NW_012108508v1   C 0 I 7
s colAng1.NW_012115411v1   468284 165 +   1230721 GGTTCTAGGCTGGTTGCCTTTCACTAGGTTAaaagcttacggtggcaagaggc----------------------------------------------------------------------------------------ggt--gacctttgctgctgtcccttgcctggcaag-------acaacc-------tctgagtctttccggaACCCACCA-----TCGTGGGTGGGTA-----TTTTCTTGTTCCTGGGGT----TCTTTGCGTGTG------TAGGCG-
i colAng1.NW_012115411v1   I 66 I 8
s otoGar3.GL873584         361436 176 +  11138919 GGTTGTAGGCTGGTTAAATTTAACTAGTTTAAAAGGCAACTGTGTCAAAAGGC----------------------------------------------------------------------------------------ACC--AAGCTTCACTGCTCTGTCTTGCCTGGCAAGAACACCAACCAGC-------TCTGAGTCCTTTGGGGGCTGGCAA-----TAGGGCTTATACA-----AATTTTTTCTTCC--AGC----TCCTTCTATGCGATATTCTAGGGG-
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398551 187 + 123869142 GGTTGTAGGCTGCTTACACTTAACTCGTTTAAAAGGCAGCTGTGTCTAGAGGC----------------------------------------------------------------------------------------GCT--GAGCGTTGCGACTCGCTCTTGCCTGGCAGG-------ACGAACACTCGGTTCTGGGTCTTTCCAGAACTGCCGGGGGGTTGGGGGGTGGATGCGTCTTCTGCTGGGGCCTGGGGCTGGGTCTTTGCATGTT------TTTGGAG
i canFam3.chrX             C 0 C 0

a score=118627.000000
s hg38.chrX_KI270880v1_alt 284558 62 +    284869 CTGATCTTTGATATC---CACT-CTGGACTCCTCTCTGC--AAAC--------CTCTGGACATGCCACAGACAGCA
s panTro5.chrX             467799 62 + 155549662 CTGATCTTTGATATC---CACT-CTGGACTCCTCTCTGC--AAAC--------CTCTGGACATGCCACAGACAGCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503405 62 + 155392059 CTGATCTTTGATATC---CACT-CTGGACTCCTCTCTGG--AAAC--------CTCTGGACATGCCACAGACAGCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362227 62 +    417917 CTGATCTTTGATATC---CACT-CTGGACTCCTCTTTGC--AAAC--------CTCTGGACATGCCACAGACAGCA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15819 63 +     47233 TGGACCTTTGGTATC---CGCT-CTGGGCTTCTATTTGCAAAAAC--------CTCTGGACACGCCACGGACAGC-
i macFas5.chrUn_KE146044   I 7 C 0
s chlSab2.chrUn_KE147541v1 267898 62 -    811265 TAGACCTTTGGTATC---CGCT-CTGGGCTTCTATTTGC--AAAC--------CCCTGGACATGCCACGGACAGCA
i chlSab2.chrUn_KE147541v1 I 7 I 48
s manLeu1.NW_012108508v1   336409 64 -    350446 TGGACCTTTGGTATC---CGCT-CTGGGCTTCTCTTTGCAAAAAC--------CTCTGGACACGCCACGGACAGCA
i manLeu1.NW_012108508v1   I 7 I 48
s colAng1.NW_012115411v1   468457 62 +   1230721 TGGACCTTTGGTATC---TGCT-GTGAGCTTCTATTTGC--AAAC--------CTCTGGACAGGCCACGGACAGCA
i colAng1.NW_012115411v1   I 8 C 0
s otoGar3.GL873584         361612 40 +  11138919 AGCGTCTTTGCCCTC---CAATGCTGGGATACTCTCTGC--AAAC-------------------------------
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398738 71 + 123869142 --CACCTCAGTCCTCCTGCACG-CTGGTATATTTTGCAC--AGACAGCTGGTCTGCTGGACCCACCCAGAGGGGCA
i canFam3.chrX             C 0 C 0
e cerAty1.NW_012001098v1   329528 119 -   1025902 I
e rheMac8.chrX             179446 119 + 149150640 I
e macNem1.NW_012017243v1   467757 119 +  25972781 I

a score=20858.000000
s hg38.chrX_KI270880v1_alt 284620 20 +    284869 GCTGTAACTTACTGAGGTCA
s panTro5.chrX             467861 20 + 155549662 GCTGTAACGTAGTGAGGTCA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503467 20 + 155392059 GCTGTAACGTAGTGAGGTCA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362289 20 +    417917 GCTGTAATGTAGTGAGGTCA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15882 14 +     47233 -----AACCTGGTGAGGTC-
i macFas5.chrUn_KE146044   C 0 C 0
s colAng1.NW_012115411v1   468519 20 +   1230721 GCTGCAACCTGGTGAGGTCA
i colAng1.NW_012115411v1   C 0 I 34
s canFam3.chrX             398809 20 + 123869142 GCTGCAGGCTGCTTAGGTCG
i canFam3.chrX             C 0 C 0
e manLeu1.NW_012108508v1   336473 48 -    350446 I
e otoGar3.GL873584         361652  0 +  11138919 C
e chlSab2.chrUn_KE147541v1 267960 48 -    811265 I
e cerAty1.NW_012001098v1   329528 119 -   1025902 I
e rheMac8.chrX             179446 119 + 149150640 I
e macNem1.NW_012017243v1   467757 119 +  25972781 I

a score=5482.000000
s hg38.chrX_KI270880v1_alt 284640 5 +    284869 ACCTG
s panTro5.chrX             467881 5 + 155549662 GCCTG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503487 5 + 155392059 GCCTG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362309 5 +    417917 GCCTG
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15896 5 +     47233 ACCTG
i macFas5.chrUn_KE146044   C 0 C 0
s canFam3.chrX             398829 5 + 123869142 TCCTG
i canFam3.chrX             C 0 I 111
e manLeu1.NW_012108508v1   336473 48 -    350446 I
e otoGar3.GL873584         361652 0 +  11138919 C
e chlSab2.chrUn_KE147541v1 267960 48 -    811265 I
e cerAty1.NW_012001098v1   329528 119 -   1025902 I
e colAng1.NW_012115411v1   468539 34 +   1230721 I
e rheMac8.chrX             179446 119 + 149150640 I
e macNem1.NW_012017243v1   467757 119 +  25972781 I

a score=27808.000000
s hg38.chrX_KI270880v1_alt 284645 62 +    284869 CTTACAACCCACGTACCAACCCCATGGAGGTGATTGTCGTA------------------TGACTAACAGCAGGCAGTTAA
s panTro5.chrX             467886 62 + 155549662 CTTACAACCCACGTACCAACCCCCTGGAGGTGATTGTCGTA------------------TGACTAACAGCAGGCCGTTAA
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503492 62 + 155392059 CTTACAACCCACGTACCAACCCCCTGGAGGTGATTGTCGTA------------------TGACTAACAGCAGGCCGTTAA
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362314 62 +    417917 CTTACAACCCACATACCAACCCCATGGAGGTGATTGTCGTA------------------CGATTAACAGCAGGCAGTTAA
i gorGor5.CYUI01015925v1   C 0 C 0
s macFas5.chrUn_KE146044    15901 30 +     47233 CTTACACACCACGTGTCCA--------------------------------------------------AAGGCGGTGAG
i macFas5.chrUn_KE146044   C 0 C 0
s otoGar3.GL873584         361652 54 +  11138919 -------ACCATGTG-------------------TGTCNNNNNNNNNNNNNNNNNNNNCTAATTAGTAGCATAGGACTAA
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             398945 62 + 123869142 CCCATGGTCCACCCACCAACCCCAGGGAGCTCATAATCCCC------------------TAATTAATAGCACAGCATTAG
i canFam3.chrX             I 111 C 0
e manLeu1.NW_012108508v1   336473 48 -    350446 I
e chlSab2.chrUn_KE147541v1 267960 48 -    811265 I
e cerAty1.NW_012001098v1   329528 119 -   1025902 I
e colAng1.NW_012115411v1   468539 34 +   1230721 I
e rheMac8.chrX             179446 119 + 149150640 I
e macNem1.NW_012017243v1   467757 119 +  25972781 I

a score=342961.000000
s hg38.chrX_KI270880v1_alt 284707 69 +    284869 GGAGAAAGTCATGCTTTACAAACGAGTCTGTGACTAGAAATCACA-GGACCTGATGAATCCCTCAGAAAC
s panTro5.chrX             467948 69 + 155549662 GGAGAAAGTCATGCTTTACAAACGAGTCTGTGACTAGAAATCACA-GGACCCGATGAATCCCTCAGAAAC
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503554 69 + 155392059 GGAGAAAGTCATGCTTTACAAACGAGTCTGTGACTAGAAATCACA-GGACCCGATGAATCCCTCAGAAAC
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362376 69 +    417917 GGAGAAAGTCGTGCTTTACAAACGAGTCTGTGACTAGAAATCACA-GGACCTGATGAATCCCTCAGAAAC
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179565 69 + 149150640 GGAGAAAGTCAGGCTTTACCCACAAGTCTGTGACTAGAAATCGGA-GAACCTGGTGAATCCCTCAGAAAC
i rheMac8.chrX             I 119 C 0
s macFas5.chrUn_KE146044    15931 69 +     47233 GGAGAAAGTCAGGCTTTACCCACAAGTCTGTGACTAGAAATCGGA-GAACCTGGTGAATCCCTCAGAAAC
i macFas5.chrUn_KE146044   C 0 C 0
s macNem1.NW_012017243v1   467876 69 +  25972781 GGAGAAAGTCAGGCTTTACCCACAAGTCTGTGACTAGAAATCGGA-GAACCTGGTGAATCCCTCAGAAAC
i macNem1.NW_012017243v1   I 119 N 0
s cerAty1.NW_012001098v1   329647 69 -   1025902 GGAGAAAGTCAGGCTTTACCCACGAGTCTGTGACTAGAAATCGGA-CAACCTGGTGAATCCCTCAGAAAC
i cerAty1.NW_012001098v1   I 119 C 0
s chlSab2.chrUn_KE147541v1 268008 69 -    811265 GGAGAAAGTCAGGCTTTACCCACGAGTCTCTGACTAGAAATCGGA-GAACCTGGTGAATCCTTTAGAAAC
i chlSab2.chrUn_KE147541v1 I 48 C 0
s manLeu1.NW_012108508v1   336521 69 -    350446 GGAGAAAGTCAGGCTTTACCCACGAGTCTGTGACTAGAAATCGGA-GAACCTGGTGAATCCTTCAGAAAC
i manLeu1.NW_012108508v1   I 48 C 0
s colAng1.NW_012115411v1   468573 69 +   1230721 GGAGAAAGTCAGGCTTTACCGATGAGTCTGTGACTAGAAATCGGA-GAATCTGGTGAATCCTTCAGAAAA
i colAng1.NW_012115411v1   I 34 C 0
s otoGar3.GL873584         361706 70 +  11138919 CAAGCAACTCATGCTGTACCAACATGTTGGGGCAGAGGGATCTCAGGGGCCTGGTGAATCCCTCAGAGAC
i otoGar3.GL873584         C 0 C 0
s canFam3.chrX             399007 61 + 123869142 ---GAAAGC--AGCTTTACAAATAAGGCTGC-ACAAAAGATCCAG-GATCCC--CGACTCCCTCAGAGGC
i canFam3.chrX             C 0 C 0

a score=25352.000000
s hg38.chrX_KI270880v1_alt 284776 17 +    284869 --CCAAGAGGGAT----GGACT---A
s panTro5.chrX             468017 17 + 155549662 --CCAAGAAGGAT----GGACT---A
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503623 17 + 155392059 --CCAAGAAGGAT----GGACT---A
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362445 17 +    417917 --CCAAGAGGGAT----GGACT---A
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179634 16 + 149150640 --TCAAGAGGGAT----GGGCT----
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    16000 16 +     47233 --TCAAGAGGGAT----GGGCT----
i macFas5.chrUn_KE146044   C 0 C 0
s cerAty1.NW_012001098v1   329716 17 -   1025902 --TCACGAGGGAT----GGGCTA---
i cerAty1.NW_012001098v1   C 0 N 0
s chlSab2.chrUn_KE147541v1 268077 17 -    811265 --TCAAGAGGGAT----GGGTT-A--
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   336590 17 -    350446 --TCAAGAGGGAC----GGGCT-A--
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   468642 21 +   1230721 --CCAAGAGGGATGTGGGGGCT--A-
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         361776 16 +  11138919 --TTAAGAGGAAT----GAAAT----
i otoGar3.GL873584         C 0 I 1
s canFam3.chrX             399068 15 + 123869142 CCCCAAAATGAAC----TG-------
i canFam3.chrX             C 0 C 0

a score=102030.000000
s hg38.chrX_KI270880v1_alt 284793 36 +    284869 -ACATT-AAGGGGTTGTGGACTGTCCAGCCGTGCAGGG
s panTro5.chrX             468034 37 + 155549662 -ACATTGAGGGGGTTGTGGACTGTCCAGCCGTGCAGGG
i panTro5.chrX             C 0 C 0
s panPan2.chrX             503640 37 + 155392059 -ACATTGAGGGGGTTGTGGACTGTCCAGCCGTGCAGGG
i panPan2.chrX             C 0 C 0
s gorGor5.CYUI01015925v1   362462 37 +    417917 -ACATTGAGGTGGTTGTGGACTGTCCAGCCGTGCAGGG
i gorGor5.CYUI01015925v1   C 0 C 0
s rheMac8.chrX             179650 37 + 149150640 -ACATGGAGGAGGTGGTGGACTGTCCAGCCGTGGAGGG
i rheMac8.chrX             C 0 C 0
s macFas5.chrUn_KE146044    16016 37 +     47233 -ACATGGAGGAGGTGGTGGACTGTCCAGCCGTGGAGGG
i macFas5.chrUn_KE146044   C 0 C 0
s chlSab2.chrUn_KE147541v1 268094 36 -    811265 --CAAGGAGGAGGTGGTGGACTGTCCAGCCGTGGAGGG
i chlSab2.chrUn_KE147541v1 C 0 C 0
s manLeu1.NW_012108508v1   336607 36 -    350446 --CATGGAGGAGGTGGTGGACTGTCCAGCCGTGGAGGG
i manLeu1.NW_012108508v1   C 0 C 0
s colAng1.NW_012115411v1   468663 37 +   1230721 -ACATGGAGGAGGTTGCGGACTGTCCGGCCGTGGAGGG
i colAng1.NW_012115411v1   C 0 C 0
s otoGar3.GL873584         361793 34 +  11138919 -ATAATGCC-AGGTGGCAGA--GTACAGCCTTGCATGG
i otoGar3.GL873584         I 1 N 0
s canFam3.chrX             399083 33 + 123869142 AGCTTGGGGAGGGAGGTGCA-----CAGCTGTGCACGG
i canFam3.chrX             C 0 C 0

a score=129986.000000
s hg38.chrX_KI270880v1_alt 284829 40 +    284869 ACAGTCTCCA-AGAAGATGC-TTTAGACACAACGGTGAATTC
s panTro5.chrX             468071 40 + 155549662 ACAGTCTCCA-AGAAGATGC-TTTAGACACAACGGTGAATTC
i panTro5.chrX             C 0 N 0
s panPan2.chrX             503677 40 + 155392059 ACAGTCTCCA-AGAAGATGC-TTTAGACACAACGGTGAATTC
i panPan2.chrX             C 0 N 0
s gorGor5.CYUI01015925v1   362499 40 +    417917 ACAGTCTCCA-AGAAGACGC-TTTAGACACAACGGTGAATTC
i gorGor5.CYUI01015925v1   C 0 N 0
s rheMac8.chrX             179687 40 + 149150640 ACGGTCTCCA-AGGAGCCGC-TTCAGACACAGCGGTGAATTC
i rheMac8.chrX             C 0 N 0
s macFas5.chrUn_KE146044    16053 40 +     47233 ACGGTCTCCA-AGGAGCCGC-TTCAGACACAGCGGTGAATTC
i macFas5.chrUn_KE146044   C 0 N 0
s chlSab2.chrUn_KE147541v1 268130 40 -    811265 ACGGTCTCCA-AGGAGCCGC-TTCAGACACAGCGGTGAATTC
i chlSab2.chrUn_KE147541v1 C 0 N 0
s manLeu1.NW_012108508v1   336643 40 -    350446 ACGGTCTCCA-AGGAGCCGC-TTCAGACACAGCGGCGAATTC
i manLeu1.NW_012108508v1   C 0 N 0
s colAng1.NW_012115411v1   468700 40 +   1230721 ACAGTGTCCA-AGAAGCCGC-TTTAGACACAGCGGCGAATTC
i colAng1.NW_012115411v1   C 0 N 0
s canFam3.chrX             399116 42 + 123869142 ACAGGCCCCAGAAAAGCCACTTTTAGACAAAACTGTGAATCC
i canFam3.chrX             C 0 N 0

