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hub gateway | description |
---|---|
primates | NCBI primate genomes (207 assemblies) |
mammals | NCBI mammal genomes (509 assemblies) |
birds | NCBI bird genomes (327 assemblies) |
fishes | NCBI fish genomes (358 assemblies) |
vertebrate | NCBI other vertebrate genomes (201 assemblies) |
invertebrate | NCBI invertebrate genomes (646 assemblies) |
fungi | NCBI fungi genomes (612 assemblies) |
plants | NCBI plant genomes (251 assemblies) |
viral | NCBI virus genomes (265 assemblies) |
bacteria | NCBI bacteria genomes (74 assemblies) |
collections below are subsets of the assemblies above | |
VGP | Vertebrate Genomes Project collection (773 assemblies) |
CCGP | The California Conservation Genomics Project (126 assemblies) |
HPRC | Human Pangenome Reference Consortium (96 assemblies) |
globalReference | Global Human Reference genomes, January 2020 (10 assemblies) |
mouseStrains | 16 mouse strain assembly and track hub, May 2017 |
legacy | NCBI genomes legacy/superseded by newer versions (437 assemblies) |
Please note: text file listing of 3891 genome assembly hubs
Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
Please use the Assembly Request page to find and request GenBank assemblies that have not yet been included in the collections here.
To reference these resources in publications, please credit:
Clawson, H., Lee, B.T., Raney, B.J. et al.
GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023).
https://doi.org/10.1186/s13059-023-03057-x