# Assembly name:  rEmyOrb1.hap2
# Organism name:  Emys orbicularis (European pond turtle)
# Isolate:  rEmyOrb1
# Sex:  male
# Taxid:          82168
# BioSample:      SAMN31805221
# BioProject:     PRJNA919101
# Submitter:      Vertebrate Genomes Project
# Date:           2023-01-26
# Assembly type:  haploid (haplotype 2)
# Release type:   major
# Assembly level: Scaffold
# Genome representation: full
# WGS project:    JAQMCV01
# Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 galaxy2
# Expected final version: no
# Genome coverage: 30.12x
# Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
# GenBank assembly accession: GCA_028017845.1
# Linked assembly: GCA_028017835.1 (haplotype 1)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_028018775.1		Primary Assembly
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
H_1	unplaced-scaffold	na	na	JAQMCV010000001.1	<>	na	Primary Assembly	57236	na
H_10	unplaced-scaffold	na	na	JAQMCV010000010.1	<>	na	Primary Assembly	37236	na
H_11	unplaced-scaffold	na	na	JAQMCV010000011.1	<>	na	Primary Assembly	35834	na
H_12	unplaced-scaffold	na	na	JAQMCV010000012.1	<>	na	Primary Assembly	34741	na
H_13	unplaced-scaffold	na	na	JAQMCV010000013.1	<>	na	Primary Assembly	32435	na
H_14	unplaced-scaffold	na	na	JAQMCV010000014.1	<>	na	Primary Assembly	32099	na
H_15	unplaced-scaffold	na	na	JAQMCV010000015.1	<>	na	Primary Assembly	29155	na
H_16	unplaced-scaffold	na	na	JAQMCV010000016.1	<>	na	Primary Assembly	28902	na
H_17	unplaced-scaffold	na	na	JAQMCV010000017.1	<>	na	Primary Assembly	25126	na
H_18	unplaced-scaffold	na	na	JAQMCV010000018.1	<>	na	Primary Assembly	24869	na
H_19	unplaced-scaffold	na	na	JAQMCV010000019.1	<>	na	Primary Assembly	18135	na
H_2	unplaced-scaffold	na	na	JAQMCV010000002.1	<>	na	Primary Assembly	50360	na
H_3	unplaced-scaffold	na	na	JAQMCV010000003.1	<>	na	Primary Assembly	45921	na
H_4	unplaced-scaffold	na	na	JAQMCV010000004.1	<>	na	Primary Assembly	44591	na
H_5	unplaced-scaffold	na	na	JAQMCV010000005.1	<>	na	Primary Assembly	42557	na
H_6	unplaced-scaffold	na	na	JAQMCV010000006.1	<>	na	Primary Assembly	41870	na
H_7	unplaced-scaffold	na	na	JAQMCV010000007.1	<>	na	Primary Assembly	41277	na
H_8	unplaced-scaffold	na	na	JAQMCV010000008.1	<>	na	Primary Assembly	38199	na
H_9	unplaced-scaffold	na	na	JAQMCV010000009.1	<>	na	Primary Assembly	37492	na
scaffold_1	unplaced-scaffold	na	na	JAQMCV010000020.1	<>	na	Primary Assembly	373365194	na
scaffold_10	unplaced-scaffold	na	na	JAQMCV010000029.1	<>	na	Primary Assembly	88857584	na
scaffold_100	unplaced-scaffold	na	na	JAQMCV010000119.1	<>	na	Primary Assembly	49969	na
scaffold_101	unplaced-scaffold	na	na	JAQMCV010000120.1	<>	na	Primary Assembly	48960	na
scaffold_102	unplaced-scaffold	na	na	JAQMCV010000121.1	<>	na	Primary Assembly	47497	na
scaffold_103	unplaced-scaffold	na	na	JAQMCV010000122.1	<>	na	Primary Assembly	46888	na
scaffold_104	unplaced-scaffold	na	na	JAQMCV010000123.1	<>	na	Primary Assembly	45644	na
scaffold_105	unplaced-scaffold	na	na	JAQMCV010000124.1	<>	na	Primary Assembly	43843	na
scaffold_106	unplaced-scaffold	na	na	JAQMCV010000125.1	<>	na	Primary Assembly	43810	na
scaffold_107	unplaced-scaffold	na	na	JAQMCV010000126.1	<>	na	Primary Assembly	41778	na
scaffold_108	unplaced-scaffold	na	na	JAQMCV010000127.1	<>	na	Primary Assembly	41198	na
scaffold_109	unplaced-scaffold	na	na	JAQMCV010000128.1	<>	na	Primary Assembly	40042	na
scaffold_11	unplaced-scaffold	na	na	JAQMCV010000030.1	<>	na	Primary Assembly	81172933	na
scaffold_110	unplaced-scaffold	na	na	JAQMCV010000129.1	<>	na	Primary Assembly	38902	na
scaffold_111	unplaced-scaffold	na	na	JAQMCV010000130.1	<>	na	Primary Assembly	38405	na
scaffold_112	unplaced-scaffold	na	na	JAQMCV010000131.1	<>	na	Primary Assembly	38179	na
scaffold_113	unplaced-scaffold	na	na	JAQMCV010000132.1	<>	na	Primary Assembly	37430	na
scaffold_114	unplaced-scaffold	na	na	JAQMCV010000133.1	<>	na	Primary Assembly	37323	na
scaffold_115	unplaced-scaffold	na	na	JAQMCV010000134.1	<>	na	Primary Assembly	36032	na
scaffold_116	unplaced-scaffold	na	na	JAQMCV010000135.1	<>	na	Primary Assembly	35807	na
scaffold_117	unplaced-scaffold	na	na	JAQMCV010000136.1	<>	na	Primary Assembly	35466	na
scaffold_118	unplaced-scaffold	na	na	JAQMCV010000137.1	<>	na	Primary Assembly	35229	na
scaffold_119	unplaced-scaffold	na	na	JAQMCV010000138.1	<>	na	Primary Assembly	35201	na
scaffold_12	unplaced-scaffold	na	na	JAQMCV010000031.1	<>	na	Primary Assembly	53809056	na
scaffold_120	unplaced-scaffold	na	na	JAQMCV010000139.1	<>	na	Primary Assembly	35151	na
scaffold_121	unplaced-scaffold	na	na	JAQMCV010000140.1	<>	na	Primary Assembly	34892	na
scaffold_122	unplaced-scaffold	na	na	JAQMCV010000141.1	<>	na	Primary Assembly	33653	na
scaffold_123	unplaced-scaffold	na	na	JAQMCV010000142.1	<>	na	Primary Assembly	31561	na
scaffold_124	unplaced-scaffold	na	na	JAQMCV010000143.1	<>	na	Primary Assembly	31052	na
scaffold_125	unplaced-scaffold	na	na	JAQMCV010000144.1	<>	na	Primary Assembly	30341	na
scaffold_126	unplaced-scaffold	na	na	JAQMCV010000145.1	<>	na	Primary Assembly	30285	na
scaffold_127	unplaced-scaffold	na	na	JAQMCV010000146.1	<>	na	Primary Assembly	29639	na
scaffold_128	unplaced-scaffold	na	na	JAQMCV010000147.1	<>	na	Primary Assembly	29562	na
scaffold_129	unplaced-scaffold	na	na	JAQMCV010000148.1	<>	na	Primary Assembly	29150	na
scaffold_13	unplaced-scaffold	na	na	JAQMCV010000032.1	<>	na	Primary Assembly	51064388	na
scaffold_130	unplaced-scaffold	na	na	JAQMCV010000149.1	<>	na	Primary Assembly	28937	na
scaffold_131	unplaced-scaffold	na	na	JAQMCV010000150.1	<>	na	Primary Assembly	25578	na
scaffold_132	unplaced-scaffold	na	na	JAQMCV010000151.1	<>	na	Primary Assembly	24631	na
scaffold_133	unplaced-scaffold	na	na	JAQMCV010000152.1	<>	na	Primary Assembly	24360	na
scaffold_134	unplaced-scaffold	na	na	JAQMCV010000153.1	<>	na	Primary Assembly	20892	na
scaffold_135	unplaced-scaffold	na	na	JAQMCV010000154.1	<>	na	Primary Assembly	19777	na
scaffold_136	unplaced-scaffold	na	na	JAQMCV010000155.1	<>	na	Primary Assembly	18017	na
scaffold_137	unplaced-scaffold	na	na	JAQMCV010000156.1	<>	na	Primary Assembly	16338	na
scaffold_14	unplaced-scaffold	na	na	JAQMCV010000033.1	<>	na	Primary Assembly	38553198	na
scaffold_15	unplaced-scaffold	na	na	JAQMCV010000034.1	<>	na	Primary Assembly	37556609	na
scaffold_16	unplaced-scaffold	na	na	JAQMCV010000035.1	<>	na	Primary Assembly	36320314	na
scaffold_17	unplaced-scaffold	na	na	JAQMCV010000036.1	<>	na	Primary Assembly	29241083	na
scaffold_18	unplaced-scaffold	na	na	JAQMCV010000037.1	<>	na	Primary Assembly	29064708	na
scaffold_19	unplaced-scaffold	na	na	JAQMCV010000038.1	<>	na	Primary Assembly	25747829	na
scaffold_2	unplaced-scaffold	na	na	JAQMCV010000021.1	<>	na	Primary Assembly	283816758	na
scaffold_20	unplaced-scaffold	na	na	JAQMCV010000039.1	<>	na	Primary Assembly	22276197	na
scaffold_21	unplaced-scaffold	na	na	JAQMCV010000040.1	<>	na	Primary Assembly	21979480	na
scaffold_22	unplaced-scaffold	na	na	JAQMCV010000041.1	<>	na	Primary Assembly	19918490	na
scaffold_23	unplaced-scaffold	na	na	JAQMCV010000042.1	<>	na	Primary Assembly	19515181	na
scaffold_24	unplaced-scaffold	na	na	JAQMCV010000043.1	<>	na	Primary Assembly	7872119	na
scaffold_25	unplaced-scaffold	na	na	JAQMCV010000044.1	<>	na	Primary Assembly	7169582	na
scaffold_26	unplaced-scaffold	na	na	JAQMCV010000045.1	<>	na	Primary Assembly	7130966	na
scaffold_27	unplaced-scaffold	na	na	JAQMCV010000046.1	<>	na	Primary Assembly	5136772	na
scaffold_28	unplaced-scaffold	na	na	JAQMCV010000047.1	<>	na	Primary Assembly	5024092	na
scaffold_29	unplaced-scaffold	na	na	JAQMCV010000048.1	<>	na	Primary Assembly	3855652	na
scaffold_3	unplaced-scaffold	na	na	JAQMCV010000022.1	<>	na	Primary Assembly	241594704	na
scaffold_30	unplaced-scaffold	na	na	JAQMCV010000049.1	<>	na	Primary Assembly	3576978	na
scaffold_31	unplaced-scaffold	na	na	JAQMCV010000050.1	<>	na	Primary Assembly	3198664	na
scaffold_32	unplaced-scaffold	na	na	JAQMCV010000051.1	<>	na	Primary Assembly	2377987	na
scaffold_33	unplaced-scaffold	na	na	JAQMCV010000052.1	<>	na	Primary Assembly	2197037	na
scaffold_34	unplaced-scaffold	na	na	JAQMCV010000053.1	<>	na	Primary Assembly	2062863	na
scaffold_35	unplaced-scaffold	na	na	JAQMCV010000054.1	<>	na	Primary Assembly	1712051	na
scaffold_36	unplaced-scaffold	na	na	JAQMCV010000055.1	<>	na	Primary Assembly	1847176	na
scaffold_37	unplaced-scaffold	na	na	JAQMCV010000056.1	<>	na	Primary Assembly	1836885	na
scaffold_38	unplaced-scaffold	na	na	JAQMCV010000057.1	<>	na	Primary Assembly	1608632	na
scaffold_39	unplaced-scaffold	na	na	JAQMCV010000058.1	<>	na	Primary Assembly	1529048	na
scaffold_4	unplaced-scaffold	na	na	JAQMCV010000023.1	<>	na	Primary Assembly	210333468	na
scaffold_40	unplaced-scaffold	na	na	JAQMCV010000059.1	<>	na	Primary Assembly	1515822	na
scaffold_41	unplaced-scaffold	na	na	JAQMCV010000060.1	<>	na	Primary Assembly	1441464	na
scaffold_42	unplaced-scaffold	na	na	JAQMCV010000061.1	<>	na	Primary Assembly	1440654	na
scaffold_43	unplaced-scaffold	na	na	JAQMCV010000062.1	<>	na	Primary Assembly	1372083	na
scaffold_44	unplaced-scaffold	na	na	JAQMCV010000063.1	<>	na	Primary Assembly	1108741	na
scaffold_45	unplaced-scaffold	na	na	JAQMCV010000064.1	<>	na	Primary Assembly	1085611	na
scaffold_46	unplaced-scaffold	na	na	JAQMCV010000065.1	<>	na	Primary Assembly	1085017	na
scaffold_47	unplaced-scaffold	na	na	JAQMCV010000066.1	<>	na	Primary Assembly	1038852	na
scaffold_48	unplaced-scaffold	na	na	JAQMCV010000067.1	<>	na	Primary Assembly	1013601	na
scaffold_49	unplaced-scaffold	na	na	JAQMCV010000068.1	<>	na	Primary Assembly	839942	na
scaffold_5	unplaced-scaffold	na	na	JAQMCV010000024.1	<>	na	Primary Assembly	135176522	na
scaffold_50	unplaced-scaffold	na	na	JAQMCV010000069.1	<>	na	Primary Assembly	821029	na
scaffold_51	unplaced-scaffold	na	na	JAQMCV010000070.1	<>	na	Primary Assembly	754126	na
scaffold_52	unplaced-scaffold	na	na	JAQMCV010000071.1	<>	na	Primary Assembly	623688	na
scaffold_53	unplaced-scaffold	na	na	JAQMCV010000072.1	<>	na	Primary Assembly	616814	na
scaffold_54	unplaced-scaffold	na	na	JAQMCV010000073.1	<>	na	Primary Assembly	569380	na
scaffold_55	unplaced-scaffold	na	na	JAQMCV010000074.1	<>	na	Primary Assembly	560656	na
scaffold_56	unplaced-scaffold	na	na	JAQMCV010000075.1	<>	na	Primary Assembly	504491	na
scaffold_57	unplaced-scaffold	na	na	JAQMCV010000076.1	<>	na	Primary Assembly	494744	na
scaffold_58	unplaced-scaffold	na	na	JAQMCV010000077.1	<>	na	Primary Assembly	472925	na
scaffold_59	unplaced-scaffold	na	na	JAQMCV010000078.1	<>	na	Primary Assembly	417714	na
scaffold_6	unplaced-scaffold	na	na	JAQMCV010000025.1	<>	na	Primary Assembly	130989954	na
scaffold_60	unplaced-scaffold	na	na	JAQMCV010000079.1	<>	na	Primary Assembly	414591	na
scaffold_61	unplaced-scaffold	na	na	JAQMCV010000080.1	<>	na	Primary Assembly	398381	na
scaffold_62	unplaced-scaffold	na	na	JAQMCV010000081.1	<>	na	Primary Assembly	397653	na
scaffold_63	unplaced-scaffold	na	na	JAQMCV010000082.1	<>	na	Primary Assembly	388453	na
scaffold_64	unplaced-scaffold	na	na	JAQMCV010000083.1	<>	na	Primary Assembly	315207	na
scaffold_65	unplaced-scaffold	na	na	JAQMCV010000084.1	<>	na	Primary Assembly	307428	na
scaffold_66	unplaced-scaffold	na	na	JAQMCV010000085.1	<>	na	Primary Assembly	296604	na
scaffold_67	unplaced-scaffold	na	na	JAQMCV010000086.1	<>	na	Primary Assembly	219735	na
scaffold_68	unplaced-scaffold	na	na	JAQMCV010000087.1	<>	na	Primary Assembly	212045	na
scaffold_69	unplaced-scaffold	na	na	JAQMCV010000088.1	<>	na	Primary Assembly	176764	na
scaffold_7	unplaced-scaffold	na	na	JAQMCV010000026.1	<>	na	Primary Assembly	114083970	na
scaffold_70	unplaced-scaffold	na	na	JAQMCV010000089.1	<>	na	Primary Assembly	143871	na
scaffold_71	unplaced-scaffold	na	na	JAQMCV010000090.1	<>	na	Primary Assembly	140200	na
scaffold_72	unplaced-scaffold	na	na	JAQMCV010000091.1	<>	na	Primary Assembly	133349	na
scaffold_73	unplaced-scaffold	na	na	JAQMCV010000092.1	<>	na	Primary Assembly	131425	na
scaffold_74	unplaced-scaffold	na	na	JAQMCV010000093.1	<>	na	Primary Assembly	130773	na
scaffold_75	unplaced-scaffold	na	na	JAQMCV010000094.1	<>	na	Primary Assembly	122535	na
scaffold_76	unplaced-scaffold	na	na	JAQMCV010000095.1	<>	na	Primary Assembly	115851	na
scaffold_77	unplaced-scaffold	na	na	JAQMCV010000096.1	<>	na	Primary Assembly	112117	na
scaffold_78	unplaced-scaffold	na	na	JAQMCV010000097.1	<>	na	Primary Assembly	110118	na
scaffold_79	unplaced-scaffold	na	na	JAQMCV010000098.1	<>	na	Primary Assembly	101722	na
scaffold_8	unplaced-scaffold	na	na	JAQMCV010000027.1	<>	na	Primary Assembly	107847434	na
scaffold_80	unplaced-scaffold	na	na	JAQMCV010000099.1	<>	na	Primary Assembly	98011	na
scaffold_81	unplaced-scaffold	na	na	JAQMCV010000100.1	<>	na	Primary Assembly	95585	na
scaffold_82	unplaced-scaffold	na	na	JAQMCV010000101.1	<>	na	Primary Assembly	92207	na
scaffold_83	unplaced-scaffold	na	na	JAQMCV010000102.1	<>	na	Primary Assembly	89934	na
scaffold_84	unplaced-scaffold	na	na	JAQMCV010000103.1	<>	na	Primary Assembly	87504	na
scaffold_85	unplaced-scaffold	na	na	JAQMCV010000104.1	<>	na	Primary Assembly	84712	na
scaffold_86	unplaced-scaffold	na	na	JAQMCV010000105.1	<>	na	Primary Assembly	84672	na
scaffold_87	unplaced-scaffold	na	na	JAQMCV010000106.1	<>	na	Primary Assembly	79763	na
scaffold_88	unplaced-scaffold	na	na	JAQMCV010000107.1	<>	na	Primary Assembly	79344	na
scaffold_89	unplaced-scaffold	na	na	JAQMCV010000108.1	<>	na	Primary Assembly	77101	na
scaffold_9	unplaced-scaffold	na	na	JAQMCV010000028.1	<>	na	Primary Assembly	91336828	na
scaffold_90	unplaced-scaffold	na	na	JAQMCV010000109.1	<>	na	Primary Assembly	76138	na
scaffold_91	unplaced-scaffold	na	na	JAQMCV010000110.1	<>	na	Primary Assembly	75440	na
scaffold_92	unplaced-scaffold	na	na	JAQMCV010000111.1	<>	na	Primary Assembly	75117	na
scaffold_93	unplaced-scaffold	na	na	JAQMCV010000112.1	<>	na	Primary Assembly	68799	na
scaffold_94	unplaced-scaffold	na	na	JAQMCV010000113.1	<>	na	Primary Assembly	62341	na
scaffold_95	unplaced-scaffold	na	na	JAQMCV010000114.1	<>	na	Primary Assembly	59850	na
scaffold_96	unplaced-scaffold	na	na	JAQMCV010000115.1	<>	na	Primary Assembly	58691	na
scaffold_97	unplaced-scaffold	na	na	JAQMCV010000116.1	<>	na	Primary Assembly	58319	na
scaffold_98	unplaced-scaffold	na	na	JAQMCV010000117.1	<>	na	Primary Assembly	55619	na
scaffold_99	unplaced-scaffold	na	na	JAQMCV010000118.1	<>	na	Primary Assembly	52751	na