# Assembly name: HG00558_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG00558 # Sex: female # Taxid: 9606 # BioSample: SAMN33758780 # BioProject: PRJNA1157251 # Submitter: UCSC Genomics Institute # Date: 2024-09-20 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHIHD01 # Assembly method: Hifiasm v. 0.19.9 # Expected final version: no # Genome coverage: 63x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042036935.1 # Linked assembly: GCA_042037725.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042037195.1 Primary Assembly ## GCA_042037215.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG00558#2#h2tg000010l assembled-molecule 1 Chromosome CM088520.1 <> na Primary Assembly 247720917 na HG00558#2#h2tg000015l assembled-molecule 3 Chromosome CM088521.1 <> na Primary Assembly 200833223 na HG00558#2#h2tg000019l assembled-molecule 4 Chromosome CM088522.1 <> na Primary Assembly 192982312 na HG00558#2#h2tg000002l assembled-molecule 5 Chromosome CM088523.1 <> na Primary Assembly 183445353 na HG00558#2#h2tg000007l assembled-molecule 6 Chromosome CM088524.1 <> na Primary Assembly 174149967 na HG00558#2#h2tg000012l assembled-molecule 7 Chromosome CM088525.1 <> na Primary Assembly 159951115 na HG00558#2#h2tg000001l assembled-molecule 8 Chromosome CM088526.1 <> na Primary Assembly 147412894 na HG00558#2#h2tg000017l assembled-molecule 9 Chromosome CM088527.1 <> na Primary Assembly 136460399 na HG00558#2#h2tg000009l assembled-molecule 10 Chromosome CM088528.1 <> na Primary Assembly 134550631 na HG00558#2#h2tg000005l assembled-molecule 11 Chromosome CM088529.1 <> na Primary Assembly 134169907 na HG00558#2#h2tg000006l assembled-molecule 12 Chromosome CM088530.1 <> na Primary Assembly 133899657 na HG00558#2#h2tg000004l assembled-molecule 14 Chromosome CM088531.1 <> na Primary Assembly 99999316 na HG00558#2#h2tg000013l assembled-molecule 15 Chromosome CM088532.1 <> na Primary Assembly 101364787 na HG00558#2#h2tg000023l assembled-molecule 16 Chromosome CM088533.1 <> na Primary Assembly 89239991 na HG00558#2#h2tg000018l assembled-molecule 20 Chromosome CM088534.1 <> na Primary Assembly 67621689 na HG00558#2#h2tg000014l assembled-molecule X Chromosome CM088535.1 <> na Primary Assembly 155574909 na HG00558#2#h2tg000008l unplaced-scaffold na na JBHIHD010000006.1 <> na Primary Assembly 149383603 na HG00558#2#h2tg000016l unplaced-scaffold na na JBHIHD010000012.1 <> na Primary Assembly 46101625 na HG00558#2#h2tg000020l unplaced-scaffold na na JBHIHD010000014.1 <> na Primary Assembly 36952275 na HG00558#2#h2tg000022l unplaced-scaffold na na JBHIHD010000015.1 <> na Primary Assembly 62142931 na HG00558#2#h2tg000024l unplaced-scaffold na na JBHIHD010000016.1 <> na Primary Assembly 36838910 na HG00558#2#h2tg000026l unplaced-scaffold na na JBHIHD010000017.1 <> na Primary Assembly 3674110 na HG00558#2#h2tg000029l unplaced-scaffold na na JBHIHD010000018.1 <> na Primary Assembly 18991549 na HG00558#2#h2tg000033l unplaced-scaffold na na JBHIHD010000019.1 <> na Primary Assembly 350825 na HG00558#2#h2tg000034l unplaced-scaffold na na JBHIHD010000020.1 <> na Primary Assembly 1391537 na HG00558#2#h2tg000036l unplaced-scaffold na na JBHIHD010000021.1 <> na Primary Assembly 1637402 na HG00558#2#h2tg000042l unplaced-scaffold na na JBHIHD010000022.1 <> na Primary Assembly 147943 na HG00558#2#h2tg000043l unplaced-scaffold na na JBHIHD010000023.1 <> na Primary Assembly 1373877 na HG00558#2#h2tg000044l unplaced-scaffold na na JBHIHD010000024.1 <> na Primary Assembly 241430 na HG00558#2#h2tg000049l unplaced-scaffold na na JBHIHD010000025.1 <> na Primary Assembly 487615 na HG00558#2#h2tg000052l unplaced-scaffold na na JBHIHD010000026.1 <> na Primary Assembly 308888 na HG00558#2#h2tg000054l unplaced-scaffold na na JBHIHD010000027.1 <> na Primary Assembly 152627 na HG00558#2#h2tg000056l unplaced-scaffold na na JBHIHD010000028.1 <> na Primary Assembly 58615 na HG00558#2#h2tg000057l unplaced-scaffold na na JBHIHD010000029.1 <> na Primary Assembly 86853 na HG00558#2#h2tg000062l unplaced-scaffold na na JBHIHD010000030.1 <> na Primary Assembly 77922 na HG00558#2#h2tg000065l unplaced-scaffold na na JBHIHD010000031.1 <> na Primary Assembly 156844 na HG00558#2#h2tg000066l unplaced-scaffold na na JBHIHD010000032.1 <> na Primary Assembly 57079 na HG00558#2#h2tg000067l unplaced-scaffold na na JBHIHD010000033.1 <> na Primary Assembly 104106 na HG00558#2#h2tg000070l unplaced-scaffold na na JBHIHD010000034.1 <> na Primary Assembly 75993 na HG00558#2#h2tg000075l unplaced-scaffold na na JBHIHD010000035.1 <> na Primary Assembly 119417 na HG00558#2#h2tg000080l unplaced-scaffold na na JBHIHD010000036.1 <> na Primary Assembly 52897 na HG00558#2#h2tg000003l unplaced-scaffold na na JBHIHD010000037.1 <> na Primary Assembly 93170455 na HG00558#2#h2tg000011l unplaced-scaffold na na JBHIHD010000040.1 <> na Primary Assembly 104375332 na HG00558#2#h2tg000021l unplaced-scaffold na na JBHIHD010000043.1 <> na Primary Assembly 18640375 na HG00558#2#h2tg000025l unplaced-scaffold na na JBHIHD010000045.1 <> na Primary Assembly 8484778 na HG00558#2#h2tg000027l unplaced-scaffold na na JBHIHD010000046.1 <> na Primary Assembly 50182918 na HG00558#2#h2tg000028l unplaced-scaffold na na JBHIHD010000047.1 <> na Primary Assembly 21387521 na HG00558#2#h2tg000030l unplaced-scaffold na na JBHIHD010000048.1 <> na Primary Assembly 7324585 na HG00558#2#h2tg000031l unplaced-scaffold na na JBHIHD010000049.1 <> na Primary Assembly 2897803 na HG00558#2#h2tg000035l unplaced-scaffold na na JBHIHD010000050.1 <> na Primary Assembly 277699 na HG00558#2#h2tg000037l unplaced-scaffold na na JBHIHD010000051.1 <> na Primary Assembly 3856202 na HG00558#2#h2tg000038l unplaced-scaffold na na JBHIHD010000052.1 <> na Primary Assembly 206415 na HG00558#2#h2tg000041l unplaced-scaffold na na JBHIHD010000053.1 <> na Primary Assembly 343537 na HG00558#2#h2tg000045l unplaced-scaffold na na JBHIHD010000054.1 <> na Primary Assembly 82504 na HG00558#2#h2tg000046l unplaced-scaffold na na JBHIHD010000055.1 <> na Primary Assembly 1474787 na HG00558#2#h2tg000047l unplaced-scaffold na na JBHIHD010000056.1 <> na Primary Assembly 71267 na HG00558#2#h2tg000048l unplaced-scaffold na na JBHIHD010000057.1 <> na Primary Assembly 396991 na HG00558#2#h2tg000050l unplaced-scaffold na na JBHIHD010000058.1 <> na Primary Assembly 176249 na HG00558#2#h2tg000051l unplaced-scaffold na na JBHIHD010000059.1 <> na Primary Assembly 50245 na HG00558#2#h2tg000053l unplaced-scaffold na na JBHIHD010000060.1 <> na Primary Assembly 58448 na HG00558#2#h2tg000055l unplaced-scaffold na na JBHIHD010000061.1 <> na Primary Assembly 151492 na HG00558#2#h2tg000058l unplaced-scaffold na na JBHIHD010000062.1 <> na Primary Assembly 5139293 na HG00558#2#h2tg000060l unplaced-scaffold na na JBHIHD010000063.1 <> na Primary Assembly 70878 na HG00558#2#h2tg000063l unplaced-scaffold na na JBHIHD010000064.1 <> na Primary Assembly 86412 na HG00558#2#h2tg000064l unplaced-scaffold na na JBHIHD010000065.1 <> na Primary Assembly 129397 na HG00558#2#h2tg000069l unplaced-scaffold na na JBHIHD010000066.1 <> na Primary Assembly 90935 na HG00558#2#h2tg000073l unplaced-scaffold na na JBHIHD010000067.1 <> na Primary Assembly 68719 na HG00558#2#h2tg000077l unplaced-scaffold na na JBHIHD010000068.1 <> na Primary Assembly 71558 na HG00558#2#h2tg000079l unplaced-scaffold na na JBHIHD010000069.1 <> na Primary Assembly 62095 na HG00558#2#atg000001l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHIHD010000070.1 <> na non-nuclear 16572 na