# Assembly name: HG00558_pat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG00558 # Sex: female # Taxid: 9606 # BioSample: SAMN33758780 # BioProject: PRJNA1157294 # Submitter: UCSC Genomics Institute # Date: 2024-09-20 # Assembly type: haploid (paternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHIHC01 # Assembly method: Hifiasm v. 0.19.9 # Expected final version: no # Genome coverage: 63x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042037725.1 # Linked assembly: GCA_042036935.1 (maternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042037795.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG00558#1#h1tg000002l assembled-molecule 1 Chromosome CM088491.1 <> na Primary Assembly 249305418 na HG00558#1#h1tg000014l assembled-molecule 3 Chromosome CM088492.1 <> na Primary Assembly 200145877 na HG00558#1#h1tg000011l assembled-molecule 4 Chromosome CM088493.1 <> na Primary Assembly 192841155 na HG00558#1#h1tg000010l assembled-molecule 5 Chromosome CM088494.1 <> na Primary Assembly 180749117 na HG00558#1#h1tg000015l assembled-molecule 6 Chromosome CM088495.1 <> na Primary Assembly 172200301 na HG00558#1#h1tg000009l assembled-molecule 7 Chromosome CM088496.1 <> na Primary Assembly 161367939 na HG00558#1#h1tg000016l assembled-molecule 8 Chromosome CM088497.1 <> na Primary Assembly 147172190 na HG00558#1#h1tg000007l assembled-molecule 9 Chromosome CM088498.1 <> na Primary Assembly 135736796 na HG00558#1#h1tg000004l assembled-molecule 11 Chromosome CM088499.1 <> na Primary Assembly 137634363 na HG00558#1#h1tg000006l assembled-molecule 12 Chromosome CM088500.1 <> na Primary Assembly 134375872 na HG00558#1#h1tg000026l assembled-molecule 13 Chromosome CM088501.1 <> na Primary Assembly 107576128 na HG00558#1#h1tg000018l assembled-molecule 16 Chromosome CM088502.1 <> na Primary Assembly 89564160 na HG00558#1#h1tg000024l assembled-molecule 20 Chromosome CM088503.1 <> na Primary Assembly 64851267 na HG00558#1#h1tg000008l assembled-molecule X Chromosome CM088504.1 <> na Primary Assembly 153792402 na HG00558#1#h1tg000005l unplaced-scaffold na na JBHIHC010000002.1 <> na Primary Assembly 98607507 na HG00558#1#h1tg000012l unplaced-scaffold na na JBHIHC010000008.1 <> na Primary Assembly 147939941 na HG00558#1#h1tg000017l unplaced-scaffold na na JBHIHC010000012.1 <> na Primary Assembly 196767 na HG00558#1#h1tg000019l unplaced-scaffold na na JBHIHC010000013.1 <> na Primary Assembly 95254849 na HG00558#1#h1tg000021l unplaced-scaffold na na JBHIHC010000014.1 <> na Primary Assembly 50615493 na HG00558#1#h1tg000022l unplaced-scaffold na na JBHIHC010000015.1 <> na Primary Assembly 37079507 na HG00558#1#h1tg000023l unplaced-scaffold na na JBHIHC010000016.1 <> na Primary Assembly 2193274 na HG00558#1#h1tg000028l unplaced-scaffold na na JBHIHC010000019.1 <> na Primary Assembly 433202 na HG00558#1#h1tg000029l unplaced-scaffold na na JBHIHC010000020.1 <> na Primary Assembly 21098637 na HG00558#1#h1tg000030l unplaced-scaffold na na JBHIHC010000021.1 <> na Primary Assembly 18251039 na HG00558#1#h1tg000032l unplaced-scaffold na na JBHIHC010000022.1 <> na Primary Assembly 6399501 na HG00558#1#h1tg000040l unplaced-scaffold na na JBHIHC010000023.1 <> na Primary Assembly 926655 na HG00558#1#h1tg000043l unplaced-scaffold na na JBHIHC010000024.1 <> na Primary Assembly 113066 na HG00558#1#h1tg000045l unplaced-scaffold na na JBHIHC010000025.1 <> na Primary Assembly 624831 na HG00558#1#h1tg000047l unplaced-scaffold na na JBHIHC010000026.1 <> na Primary Assembly 509431 na HG00558#1#h1tg000048l unplaced-scaffold na na JBHIHC010000027.1 <> na Primary Assembly 71328 na HG00558#1#h1tg000049l unplaced-scaffold na na JBHIHC010000028.1 <> na Primary Assembly 417849 na HG00558#1#h1tg000051l unplaced-scaffold na na JBHIHC010000029.1 <> na Primary Assembly 225162 na HG00558#1#h1tg000052l unplaced-scaffold na na JBHIHC010000030.1 <> na Primary Assembly 1942827 na HG00558#1#h1tg000054l unplaced-scaffold na na JBHIHC010000031.1 <> na Primary Assembly 403053 na HG00558#1#h1tg000056l unplaced-scaffold na na JBHIHC010000032.1 <> na Primary Assembly 1130948 na HG00558#1#h1tg000057l unplaced-scaffold na na JBHIHC010000033.1 <> na Primary Assembly 81504 na HG00558#1#h1tg000060l unplaced-scaffold na na JBHIHC010000034.1 <> na Primary Assembly 113273 na HG00558#1#h1tg000062l unplaced-scaffold na na JBHIHC010000035.1 <> na Primary Assembly 147699 na HG00558#1#h1tg000063l unplaced-scaffold na na JBHIHC010000036.1 <> na Primary Assembly 307154 na HG00558#1#h1tg000065l unplaced-scaffold na na JBHIHC010000037.1 <> na Primary Assembly 668000 na HG00558#1#h1tg000066l unplaced-scaffold na na JBHIHC010000038.1 <> na Primary Assembly 174127 na HG00558#1#h1tg000068l unplaced-scaffold na na JBHIHC010000039.1 <> na Primary Assembly 192430 na HG00558#1#h1tg000072l unplaced-scaffold na na JBHIHC010000040.1 <> na Primary Assembly 141468 na HG00558#1#h1tg000081l unplaced-scaffold na na JBHIHC010000041.1 <> na Primary Assembly 308476 na HG00558#1#h1tg000086l unplaced-scaffold na na JBHIHC010000042.1 <> na Primary Assembly 93999 na HG00558#1#h1tg000088l unplaced-scaffold na na JBHIHC010000043.1 <> na Primary Assembly 261602 na HG00558#1#h1tg000089l unplaced-scaffold na na JBHIHC010000044.1 <> na Primary Assembly 167658 na HG00558#1#h1tg000091l unplaced-scaffold na na JBHIHC010000045.1 <> na Primary Assembly 185040 na HG00558#1#h1tg000096l unplaced-scaffold na na JBHIHC010000046.1 <> na Primary Assembly 54524 na HG00558#1#h1tg000098l unplaced-scaffold na na JBHIHC010000047.1 <> na Primary Assembly 175655 na HG00558#1#h1tg000104l unplaced-scaffold na na JBHIHC010000048.1 <> na Primary Assembly 55486 na HG00558#1#h1tg000105l unplaced-scaffold na na JBHIHC010000049.1 <> na Primary Assembly 63631 na HG00558#1#h1tg000107l unplaced-scaffold na na JBHIHC010000050.1 <> na Primary Assembly 69176 na HG00558#1#h1tg000108l unplaced-scaffold na na JBHIHC010000051.1 <> na Primary Assembly 51135 na HG00558#1#h1tg000111l unplaced-scaffold na na JBHIHC010000052.1 <> na Primary Assembly 57757 na HG00558#1#h1tg000117l unplaced-scaffold na na JBHIHC010000053.1 <> na Primary Assembly 67097 na HG00558#1#h1tg000122l unplaced-scaffold na na JBHIHC010000054.1 <> na Primary Assembly 57459 na HG00558#1#h1tg000001l unplaced-scaffold na na JBHIHC010000055.1 <> na Primary Assembly 94634338 na HG00558#1#h1tg000003l unplaced-scaffold na na JBHIHC010000057.1 <> na Primary Assembly 61059685 na HG00558#1#h1tg000013l unplaced-scaffold na na JBHIHC010000059.1 <> na Primary Assembly 38787302 na HG00558#1#h1tg000020l unplaced-scaffold na na JBHIHC010000061.1 <> na Primary Assembly 135539381 na HG00558#1#h1tg000025l unplaced-scaffold na na JBHIHC010000062.1 <> na Primary Assembly 57024750 na HG00558#1#h1tg000027l unplaced-scaffold na na JBHIHC010000063.1 <> na Primary Assembly 3183924 na HG00558#1#h1tg000031l unplaced-scaffold na na JBHIHC010000064.1 <> na Primary Assembly 19289791 na HG00558#1#h1tg000033l unplaced-scaffold na na JBHIHC010000065.1 <> na Primary Assembly 2937860 na HG00558#1#h1tg000034l unplaced-scaffold na na JBHIHC010000066.1 <> na Primary Assembly 3421037 na HG00558#1#h1tg000035l unplaced-scaffold na na JBHIHC010000067.1 <> na Primary Assembly 256125 na HG00558#1#h1tg000036l unplaced-scaffold na na JBHIHC010000068.1 <> na Primary Assembly 4559538 na HG00558#1#h1tg000037l unplaced-scaffold na na JBHIHC010000069.1 <> na Primary Assembly 561507 na HG00558#1#h1tg000038l unplaced-scaffold na na JBHIHC010000070.1 <> na Primary Assembly 672948 na HG00558#1#h1tg000039l unplaced-scaffold na na JBHIHC010000071.1 <> na Primary Assembly 986718 na HG00558#1#h1tg000041l unplaced-scaffold na na JBHIHC010000072.1 <> na Primary Assembly 1384869 na HG00558#1#h1tg000044l unplaced-scaffold na na JBHIHC010000073.1 <> na Primary Assembly 220466 na HG00558#1#h1tg000046l unplaced-scaffold na na JBHIHC010000074.1 <> na Primary Assembly 127175 na HG00558#1#h1tg000050l unplaced-scaffold na na JBHIHC010000075.1 <> na Primary Assembly 208476 na HG00558#1#h1tg000053l unplaced-scaffold na na JBHIHC010000076.1 <> na Primary Assembly 700378 na HG00558#1#h1tg000055l unplaced-scaffold na na JBHIHC010000077.1 <> na Primary Assembly 74546 na HG00558#1#h1tg000058l unplaced-scaffold na na JBHIHC010000078.1 <> na Primary Assembly 302412 na HG00558#1#h1tg000059l unplaced-scaffold na na JBHIHC010000079.1 <> na Primary Assembly 213866 na HG00558#1#h1tg000061l unplaced-scaffold na na JBHIHC010000080.1 <> na Primary Assembly 365010 na HG00558#1#h1tg000064l unplaced-scaffold na na JBHIHC010000081.1 <> na Primary Assembly 409941 na HG00558#1#h1tg000067l unplaced-scaffold na na JBHIHC010000082.1 <> na Primary Assembly 162769 na HG00558#1#h1tg000069l unplaced-scaffold na na JBHIHC010000083.1 <> na Primary Assembly 131522 na HG00558#1#h1tg000070l unplaced-scaffold na na JBHIHC010000084.1 <> na Primary Assembly 384442 na HG00558#1#h1tg000073l unplaced-scaffold na na JBHIHC010000085.1 <> na Primary Assembly 68408 na HG00558#1#h1tg000074l unplaced-scaffold na na JBHIHC010000086.1 <> na Primary Assembly 65827 na HG00558#1#h1tg000075l unplaced-scaffold na na JBHIHC010000087.1 <> na Primary Assembly 527346 na HG00558#1#h1tg000076l unplaced-scaffold na na JBHIHC010000088.1 <> na Primary Assembly 253892 na HG00558#1#h1tg000077l unplaced-scaffold na na JBHIHC010000089.1 <> na Primary Assembly 337492 na HG00558#1#h1tg000079l unplaced-scaffold na na JBHIHC010000090.1 <> na Primary Assembly 715807 na HG00558#1#h1tg000080l unplaced-scaffold na na JBHIHC010000091.1 <> na Primary Assembly 177648 na HG00558#1#h1tg000082l unplaced-scaffold na na JBHIHC010000092.1 <> na Primary Assembly 238303 na HG00558#1#h1tg000083l unplaced-scaffold na na JBHIHC010000093.1 <> na Primary Assembly 183629 na HG00558#1#h1tg000084l unplaced-scaffold na na JBHIHC010000094.1 <> na Primary Assembly 70405 na HG00558#1#h1tg000085l unplaced-scaffold na na JBHIHC010000095.1 <> na Primary Assembly 70620 na HG00558#1#h1tg000087l unplaced-scaffold na na JBHIHC010000096.1 <> na Primary Assembly 184786 na HG00558#1#h1tg000092l unplaced-scaffold na na JBHIHC010000097.1 <> na Primary Assembly 80924 na HG00558#1#h1tg000093l unplaced-scaffold na na JBHIHC010000098.1 <> na Primary Assembly 67716 na HG00558#1#h1tg000094l unplaced-scaffold na na JBHIHC010000099.1 <> na Primary Assembly 161301 na HG00558#1#h1tg000095l unplaced-scaffold na na JBHIHC010000100.1 <> na Primary Assembly 53116 na HG00558#1#h1tg000099l unplaced-scaffold na na JBHIHC010000101.1 <> na Primary Assembly 71987 na HG00558#1#h1tg000100l unplaced-scaffold na na JBHIHC010000102.1 <> na Primary Assembly 66383 na HG00558#1#h1tg000101l unplaced-scaffold na na JBHIHC010000103.1 <> na Primary Assembly 53004 na HG00558#1#h1tg000102l unplaced-scaffold na na JBHIHC010000104.1 <> na Primary Assembly 100962 na HG00558#1#h1tg000103l unplaced-scaffold na na JBHIHC010000105.1 <> na Primary Assembly 82118 na HG00558#1#h1tg000109l unplaced-scaffold na na JBHIHC010000106.1 <> na Primary Assembly 86542 na HG00558#1#h1tg000110l unplaced-scaffold na na JBHIHC010000107.1 <> na Primary Assembly 208721 na HG00558#1#h1tg000113l unplaced-scaffold na na JBHIHC010000108.1 <> na Primary Assembly 99579 na HG00558#1#h1tg000114l unplaced-scaffold na na JBHIHC010000109.1 <> na Primary Assembly 91967 na HG00558#1#h1tg000115l unplaced-scaffold na na JBHIHC010000110.1 <> na Primary Assembly 54153 na HG00558#1#h1tg000116l unplaced-scaffold na na JBHIHC010000111.1 <> na Primary Assembly 108386 na HG00558#1#h1tg000119l unplaced-scaffold na na JBHIHC010000112.1 <> na Primary Assembly 83908 na HG00558#1#h1tg000121l unplaced-scaffold na na JBHIHC010000113.1 <> na Primary Assembly 53257 na