# Assembly name: ASM4372814v1 # Organism name: Rhinolophus trifoliatus (Trefoil horseshoe bat) # Infraspecific name: ecotype=Malaysia # Sex: male # Taxid: 430492 # BioSample: SAMN33421007 # BioProject: PRJNA937897 # Submitter: Bat1K # Date: 2024-10-24 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARDWN01 # Assembly method: HiFiasm v. 0.13; purge-dups v. 1.2.3; bwa-mem v. 0.7.17; salsa v. 2.2; pbmm2 v. 1.4; deepvariant v. 1.2.0; bcftools v. 1.12 # Expected final version: yes # Genome coverage: 27x # Sequencing technology: PacBio Sequel; Illumina NovaSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_043728145.1 # Linked assembly: GCA_043728055.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_043728215.1 Primary Assembly ## GCA_043728305.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name manual_scaffold_1 assembled-molecule 1 Chromosome CM093112.1 <> na Primary Assembly 220842049 na manual_scaffold_6 assembled-molecule 2 Chromosome CM093113.1 <> na Primary Assembly 220335264 na manual_scaffold_11 assembled-molecule 3 Chromosome CM093114.1 <> na Primary Assembly 195071716 na manual_scaffold_2 assembled-molecule 4 Chromosome CM093115.1 <> na Primary Assembly 194547401 na manual_scaffold_5 assembled-molecule 5 Chromosome CM093116.1 <> na Primary Assembly 187817605 na manual_scaffold_3 assembled-molecule 6 Chromosome CM093117.1 <> na Primary Assembly 184920896 na manual_scaffold_4 assembled-molecule 7 Chromosome CM093118.1 <> na Primary Assembly 175554969 na manual_scaffold_7 assembled-molecule 8 Chromosome CM093119.1 <> na Primary Assembly 120000719 na manual_scaffold_8 assembled-molecule 9 Chromosome CM093120.1 <> na Primary Assembly 109176887 na manual_scaffold_10 assembled-molecule 10 Chromosome CM093121.1 <> na Primary Assembly 100537001 na manual_scaffold_12 assembled-molecule 11 Chromosome CM093122.1 <> na Primary Assembly 92091446 na manual_scaffold_13 assembled-molecule 12 Chromosome CM093123.1 <> na Primary Assembly 80865862 na manual_scaffold_14 assembled-molecule 13 Chromosome CM093124.1 <> na Primary Assembly 58180676 na manual_scaffold_16 assembled-molecule 14 Chromosome CM093125.1 <> na Primary Assembly 52527844 na manual_scaffold_15 assembled-molecule 15 Chromosome CM093126.1 <> na Primary Assembly 49007307 na manual_scaffold_9 assembled-molecule X Chromosome CM093127.1 <> na Primary Assembly 86017936 na manual_scaffold_17 assembled-molecule Y Chromosome CM093128.1 <> na Primary Assembly 41710516 na manual_scaffold_18 unplaced-scaffold na na JARDWN010000018.1 <> na Primary Assembly 6033880 na manual_scaffold_19 unplaced-scaffold na na JARDWN010000019.1 <> na Primary Assembly 4155080 na manual_scaffold_20 unplaced-scaffold na na JARDWN010000020.1 <> na Primary Assembly 3789355 na manual_scaffold_21 unplaced-scaffold na na JARDWN010000021.1 <> na Primary Assembly 3432022 na manual_scaffold_22 unplaced-scaffold na na JARDWN010000022.1 <> na Primary Assembly 3323415 na manual_scaffold_23 unplaced-scaffold na na JARDWN010000023.1 <> na Primary Assembly 2656765 na manual_scaffold_24 unplaced-scaffold na na JARDWN010000024.1 <> na Primary Assembly 2396875 na manual_scaffold_25 unplaced-scaffold na na JARDWN010000025.1 <> na Primary Assembly 2366309 na manual_scaffold_26 unplaced-scaffold na na JARDWN010000026.1 <> na Primary Assembly 2267883 na manual_scaffold_27 unplaced-scaffold na na JARDWN010000027.1 <> na Primary Assembly 2152060 na manual_scaffold_28 unplaced-scaffold na na JARDWN010000028.1 <> na Primary Assembly 1771701 na manual_scaffold_29 unplaced-scaffold na na JARDWN010000029.1 <> na Primary Assembly 1627504 na manual_scaffold_30 unplaced-scaffold na na JARDWN010000030.1 <> na Primary Assembly 1556432 na manual_scaffold_31 unplaced-scaffold na na JARDWN010000031.1 <> na Primary Assembly 1433943 na manual_scaffold_32 unplaced-scaffold na na JARDWN010000032.1 <> na Primary Assembly 1424372 na manual_scaffold_33 unplaced-scaffold na na JARDWN010000033.1 <> na Primary Assembly 1319875 na manual_scaffold_34 unplaced-scaffold na na JARDWN010000034.1 <> na Primary Assembly 1316376 na manual_scaffold_35 unplaced-scaffold na na JARDWN010000035.1 <> na Primary Assembly 1177762 na manual_scaffold_36 unplaced-scaffold na na JARDWN010000036.1 <> na Primary Assembly 1057700 na manual_scaffold_37 unplaced-scaffold na na JARDWN010000037.1 <> na Primary Assembly 837606 na manual_scaffold_38 unplaced-scaffold na na JARDWN010000038.1 <> na Primary Assembly 823068 na manual_scaffold_39 unplaced-scaffold na na JARDWN010000039.1 <> na Primary Assembly 785835 na manual_scaffold_40 unplaced-scaffold na na JARDWN010000040.1 <> na Primary Assembly 713657 na manual_scaffold_41 unplaced-scaffold na na JARDWN010000041.1 <> na Primary Assembly 596318 na manual_scaffold_42 unplaced-scaffold na na JARDWN010000042.1 <> na Primary Assembly 595982 na manual_scaffold_43 unplaced-scaffold na na JARDWN010000043.1 <> na Primary Assembly 575824 na manual_scaffold_44 unplaced-scaffold na na JARDWN010000044.1 <> na Primary Assembly 572741 na manual_scaffold_45 unplaced-scaffold na na JARDWN010000045.1 <> na Primary Assembly 568460 na manual_scaffold_46 unplaced-scaffold na na JARDWN010000046.1 <> na Primary Assembly 544568 na manual_scaffold_47 unplaced-scaffold na na JARDWN010000047.1 <> na Primary Assembly 515986 na manual_scaffold_48 unplaced-scaffold na na JARDWN010000048.1 <> na Primary Assembly 499189 na manual_scaffold_49 unplaced-scaffold na na JARDWN010000049.1 <> na Primary Assembly 472733 na manual_scaffold_50 unplaced-scaffold na na JARDWN010000050.1 <> na Primary Assembly 431084 na manual_scaffold_51 unplaced-scaffold na na JARDWN010000051.1 <> na Primary Assembly 419877 na manual_scaffold_52 unplaced-scaffold na na JARDWN010000052.1 <> na Primary Assembly 419256 na manual_scaffold_53 unplaced-scaffold na na JARDWN010000053.1 <> na Primary Assembly 359067 na manual_scaffold_54 unplaced-scaffold na na JARDWN010000054.1 <> na Primary Assembly 324013 na manual_scaffold_55 unplaced-scaffold na na JARDWN010000055.1 <> na Primary Assembly 315383 na manual_scaffold_56 unplaced-scaffold na na JARDWN010000056.1 <> na Primary Assembly 287686 na manual_scaffold_57 unplaced-scaffold na na JARDWN010000057.1 <> na Primary Assembly 284949 na manual_scaffold_58 unplaced-scaffold na na JARDWN010000058.1 <> na Primary Assembly 274307 na manual_scaffold_59 unplaced-scaffold na na JARDWN010000059.1 <> na Primary Assembly 269503 na manual_scaffold_60 unplaced-scaffold na na JARDWN010000060.1 <> na Primary Assembly 258210 na manual_scaffold_61 unplaced-scaffold na na JARDWN010000061.1 <> na Primary Assembly 249234 na manual_scaffold_62 unplaced-scaffold na na JARDWN010000062.1 <> na Primary Assembly 245422 na manual_scaffold_63 unplaced-scaffold na na JARDWN010000063.1 <> na Primary Assembly 231961 na manual_scaffold_64 unplaced-scaffold na na JARDWN010000064.1 <> na Primary Assembly 218647 na manual_scaffold_65 unplaced-scaffold na na JARDWN010000065.1 <> na Primary Assembly 217422 na manual_scaffold_66 unplaced-scaffold na na JARDWN010000066.1 <> na Primary Assembly 203542 na manual_scaffold_67 unplaced-scaffold na na JARDWN010000067.1 <> na Primary Assembly 197499 na manual_scaffold_68 unplaced-scaffold na na JARDWN010000068.1 <> na Primary Assembly 196619 na manual_scaffold_69 unplaced-scaffold na na JARDWN010000069.1 <> na Primary Assembly 192617 na manual_scaffold_70 unplaced-scaffold na na JARDWN010000070.1 <> na Primary Assembly 181776 na manual_scaffold_71 unplaced-scaffold na na JARDWN010000071.1 <> na Primary Assembly 176679 na manual_scaffold_72 unplaced-scaffold na na JARDWN010000072.1 <> na Primary Assembly 175587 na manual_scaffold_73 unplaced-scaffold na na JARDWN010000073.1 <> na Primary Assembly 166209 na manual_scaffold_74 unplaced-scaffold na na JARDWN010000074.1 <> na Primary Assembly 159163 na manual_scaffold_75 unplaced-scaffold na na JARDWN010000075.1 <> na Primary Assembly 155066 na manual_scaffold_76 unplaced-scaffold na na JARDWN010000076.1 <> na Primary Assembly 153042 na manual_scaffold_77 unplaced-scaffold na na JARDWN010000077.1 <> na Primary Assembly 144176 na manual_scaffold_78 unplaced-scaffold na na JARDWN010000078.1 <> na Primary Assembly 142987 na manual_scaffold_79 unplaced-scaffold na na JARDWN010000079.1 <> na Primary Assembly 135637 na manual_scaffold_80 unplaced-scaffold na na JARDWN010000080.1 <> na Primary Assembly 121223 na manual_scaffold_81 unplaced-scaffold na na JARDWN010000081.1 <> na Primary Assembly 121134 na manual_scaffold_82 unplaced-scaffold na na JARDWN010000082.1 <> na Primary Assembly 119674 na manual_scaffold_83 unplaced-scaffold na na JARDWN010000083.1 <> na Primary Assembly 119389 na manual_scaffold_84 unplaced-scaffold na na JARDWN010000084.1 <> na Primary Assembly 104489 na manual_scaffold_85 unplaced-scaffold na na JARDWN010000085.1 <> na Primary Assembly 101758 na manual_scaffold_86 unplaced-scaffold na na JARDWN010000086.1 <> na Primary Assembly 96849 na manual_scaffold_87 unplaced-scaffold na na JARDWN010000087.1 <> na Primary Assembly 95661 na manual_scaffold_88 unplaced-scaffold na na JARDWN010000088.1 <> na Primary Assembly 93432 na manual_scaffold_89 unplaced-scaffold na na JARDWN010000089.1 <> na Primary Assembly 91667 na manual_scaffold_90 unplaced-scaffold na na JARDWN010000090.1 <> na Primary Assembly 85463 na manual_scaffold_91 unplaced-scaffold na na JARDWN010000091.1 <> na Primary Assembly 84172 na manual_scaffold_92 unplaced-scaffold na na JARDWN010000092.1 <> na Primary Assembly 80866 na manual_scaffold_93 unplaced-scaffold na na JARDWN010000093.1 <> na Primary Assembly 80058 na manual_scaffold_94 unplaced-scaffold na na JARDWN010000094.1 <> na Primary Assembly 77471 na manual_scaffold_95 unplaced-scaffold na na JARDWN010000095.1 <> na Primary Assembly 74648 na manual_scaffold_96 unplaced-scaffold na na JARDWN010000096.1 <> na Primary Assembly 69642 na manual_scaffold_97 unplaced-scaffold na na JARDWN010000097.1 <> na Primary Assembly 69548 na manual_scaffold_98 unplaced-scaffold na na JARDWN010000098.1 <> na Primary Assembly 61557 na manual_scaffold_99 unplaced-scaffold na na JARDWN010000099.1 <> na Primary Assembly 60737 na manual_scaffold_100 unplaced-scaffold na na JARDWN010000100.1 <> na Primary Assembly 58114 na manual_scaffold_101 unplaced-scaffold na na JARDWN010000101.1 <> na Primary Assembly 52923 na manual_scaffold_102 unplaced-scaffold na na JARDWN010000102.1 <> na Primary Assembly 49756 na manual_scaffold_103 unplaced-scaffold na na JARDWN010000103.1 <> na Primary Assembly 46079 na manual_scaffold_104 unplaced-scaffold na na JARDWN010000104.1 <> na Primary Assembly 44377 na manual_scaffold_105 unplaced-scaffold na na JARDWN010000105.1 <> na Primary Assembly 41521 na manual_scaffold_106 unplaced-scaffold na na JARDWN010000106.1 <> na Primary Assembly 39593 na manual_scaffold_107 unplaced-scaffold na na JARDWN010000107.1 <> na Primary Assembly 37705 na manual_scaffold_108 unplaced-scaffold na na JARDWN010000108.1 <> na Primary Assembly 35678 na manual_scaffold_109 unplaced-scaffold na na JARDWN010000109.1 <> na Primary Assembly 34580 na manual_scaffold_110 unplaced-scaffold na na JARDWN010000110.1 <> na Primary Assembly 33349 na manual_scaffold_111 unplaced-scaffold na na JARDWN010000111.1 <> na Primary Assembly 32578 na manual_scaffold_112 unplaced-scaffold na na JARDWN010000112.1 <> na Primary Assembly 31264 na manual_scaffold_113 unplaced-scaffold na na JARDWN010000113.1 <> na Primary Assembly 31100 na manual_scaffold_114 unplaced-scaffold na na JARDWN010000114.1 <> na Primary Assembly 30149 na manual_scaffold_115 unplaced-scaffold na na JARDWN010000115.1 <> na Primary Assembly 30035 na manual_scaffold_116 unplaced-scaffold na na JARDWN010000116.1 <> na Primary Assembly 29952 na manual_scaffold_117 unplaced-scaffold na na JARDWN010000117.1 <> na Primary Assembly 28270 na manual_scaffold_118 unplaced-scaffold na na JARDWN010000118.1 <> na Primary Assembly 27333 na manual_scaffold_119 unplaced-scaffold na na JARDWN010000119.1 <> na Primary Assembly 22975 na manual_scaffold_120 unplaced-scaffold na na JARDWN010000120.1 <> na Primary Assembly 20527 na manual_scaffold_121 unplaced-scaffold na na JARDWN010000121.1 <> na Primary Assembly 20229 na manual_scaffold_122 unplaced-scaffold na na JARDWN010000122.1 <> na Primary Assembly 17387 na manual_scaffold_123 unplaced-scaffold na na JARDWN010000123.1 <> na Primary Assembly 17307 na manual_scaffold_124 unplaced-scaffold na na JARDWN010000124.1 <> na Primary Assembly 15468 na manual_scaffold_125 unplaced-scaffold na na JARDWN010000125.1 <> na Primary Assembly 14106 na atg000012l_rc_rotated assembled-molecule MT Mitochondrion CM093172.1 <> na non-nuclear 16777 na