# Assembly name: bLonStr1.mat # Organism name: Lonchura striata (white-rumped munia) # Isolate: bLonStr1 # Sex: male # Taxid: 40157 # BioSample: SAMN44779081 # BioProject: PRJNA1186962 # Submitter: Vertebrate Genomes Project # Date: 2024-12-17 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBJHRQ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.9 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 69.0x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_046129695.1 # Linked assembly: GCA_046129705.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_046129745.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM100612.1 <> na Primary Assembly 157315129 na SUPER_2 assembled-molecule 2 Chromosome CM100613.1 <> na Primary Assembly 117569463 na SUPER_3 assembled-molecule 3 Chromosome CM100614.1 <> na Primary Assembly 113993779 na SUPER_4 assembled-molecule 4 Chromosome CM100615.1 <> na Primary Assembly 76977286 na SUPER_5 assembled-molecule 5 Chromosome CM100616.1 <> na Primary Assembly 73424396 na SUPER_6 assembled-molecule 6 Chromosome CM100617.1 <> na Primary Assembly 70844820 na SUPER_7 assembled-molecule 7 Chromosome CM100618.1 <> na Primary Assembly 40407389 na SUPER_8 assembled-molecule 8 Chromosome CM100619.1 <> na Primary Assembly 40362602 na SUPER_9 assembled-molecule 9 Chromosome CM100620.1 <> na Primary Assembly 30234567 na SUPER_10 assembled-molecule 10 Chromosome CM100621.1 <> na Primary Assembly 27298692 na SUPER_11 assembled-molecule 11 Chromosome CM100622.1 <> na Primary Assembly 24801325 na SUPER_12 assembled-molecule 12 Chromosome CM100623.1 <> na Primary Assembly 24353675 na SUPER_13 assembled-molecule 13 Chromosome CM100624.1 <> na Primary Assembly 23994805 na SUPER_14 assembled-molecule 14 Chromosome CM100625.1 <> na Primary Assembly 21850736 na SUPER_15 assembled-molecule 15 Chromosome CM100626.1 <> na Primary Assembly 19856986 na SUPER_16 assembled-molecule 16 Chromosome CM100627.1 <> na Primary Assembly 17873874 na SUPER_17 assembled-molecule 17 Chromosome CM100628.1 <> na Primary Assembly 15904283 na SUPER_18 assembled-molecule 18 Chromosome CM100629.1 <> na Primary Assembly 15433448 na SUPER_19 assembled-molecule 19 Chromosome CM100630.1 <> na Primary Assembly 12897437 na SUPER_20 assembled-molecule 20 Chromosome CM100631.1 <> na Primary Assembly 12119265 na SUPER_21 assembled-molecule 21 Chromosome CM100632.1 <> na Primary Assembly 11558188 na SUPER_22 assembled-molecule 22 Chromosome CM100633.1 <> na Primary Assembly 11412281 na SUPER_23 assembled-molecule 23 Chromosome CM100634.1 <> na Primary Assembly 11233015 na SUPER_24 assembled-molecule 24 Chromosome CM100635.1 <> na Primary Assembly 10279328 na SUPER_25 assembled-molecule 25 Chromosome CM100636.1 <> na Primary Assembly 9989107 na SUPER_26 assembled-molecule 26 Chromosome CM100637.1 <> na Primary Assembly 9651691 na SUPER_27 assembled-molecule 27 Chromosome CM100638.1 <> na Primary Assembly 9530130 na SUPER_28 assembled-molecule 28 Chromosome CM100639.1 <> na Primary Assembly 8652657 na SUPER_29 assembled-molecule 29 Chromosome CM100640.1 <> na Primary Assembly 7830199 na SUPER_30 assembled-molecule 30 Chromosome CM100641.1 <> na Primary Assembly 6699845 na SUPER_31 assembled-molecule 31 Chromosome CM100642.1 <> na Primary Assembly 6571379 na SUPER_32 assembled-molecule 32 Chromosome CM100643.1 <> na Primary Assembly 6452742 na SUPER_33 assembled-molecule 33 Chromosome CM100644.1 <> na Primary Assembly 6004506 na SUPER_34 assembled-molecule 34 Chromosome CM100645.1 <> na Primary Assembly 5263211 na SUPER_35 assembled-molecule 35 Chromosome CM100646.1 <> na Primary Assembly 5182662 na SUPER_36 assembled-molecule 36 Chromosome CM100647.1 <> na Primary Assembly 3935492 na SUPER_37 assembled-molecule 37 Chromosome CM100648.1 <> na Primary Assembly 3588607 na SUPER_38 assembled-molecule 38 Chromosome CM100649.1 <> na Primary Assembly 3429855 na SUPER_39 assembled-molecule 39 Chromosome CM100650.1 <> na Primary Assembly 1279623 na SUPER_Z assembled-molecule Z Chromosome CM100651.1 <> na Primary Assembly 86666777 na SUPER_12_unloc_1 unlocalized-scaffold 12 Chromosome JBJHRQ010000061.1 <> na Primary Assembly 626571 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JBJHRQ010000069.1 <> na Primary Assembly 465229 na SUPER_14_unloc_2 unlocalized-scaffold 14 Chromosome JBJHRQ010000070.1 <> na Primary Assembly 398555 na SUPER_Z_unloc_1 unlocalized-scaffold Z Chromosome JBJHRQ010000060.1 <> na Primary Assembly 639713 na Scaffold_82 unplaced-scaffold na na JBJHRQ010000036.1 <> na Primary Assembly 5226282 na Scaffold_85 unplaced-scaffold na na JBJHRQ010000041.1 <> na Primary Assembly 2424353 na Scaffold_90 unplaced-scaffold na na JBJHRQ010000042.1 <> na Primary Assembly 1872588 na Scaffold_91 unplaced-scaffold na na JBJHRQ010000043.1 <> na Primary Assembly 1717428 na Scaffold_92 unplaced-scaffold na na JBJHRQ010000044.1 <> na Primary Assembly 1475932 na Scaffold_97 unplaced-scaffold na na JBJHRQ010000045.1 <> na Primary Assembly 1282472 na Scaffold_99 unplaced-scaffold na na JBJHRQ010000047.1 <> na Primary Assembly 1225168 na Scaffold_100 unplaced-scaffold na na JBJHRQ010000048.1 <> na Primary Assembly 1216534 na Scaffold_106 unplaced-scaffold na na JBJHRQ010000049.1 <> na Primary Assembly 988764 na Scaffold_109 unplaced-scaffold na na JBJHRQ010000050.1 <> na Primary Assembly 871734 na Scaffold_111 unplaced-scaffold na na JBJHRQ010000051.1 <> na Primary Assembly 862484 na Scaffold_113 unplaced-scaffold na na JBJHRQ010000052.1 <> na Primary Assembly 846873 na Scaffold_114 unplaced-scaffold na na JBJHRQ010000053.1 <> na Primary Assembly 804502 na Scaffold_115 unplaced-scaffold na na JBJHRQ010000054.1 <> na Primary Assembly 804323 na Scaffold_116 unplaced-scaffold na na JBJHRQ010000055.1 <> na Primary Assembly 801386 na Scaffold_117 unplaced-scaffold na na JBJHRQ010000056.1 <> na Primary Assembly 770528 na Scaffold_118 unplaced-scaffold na na JBJHRQ010000057.1 <> na Primary Assembly 753232 na Scaffold_121 unplaced-scaffold na na JBJHRQ010000058.1 <> na Primary Assembly 724234 na Scaffold_123 unplaced-scaffold na na JBJHRQ010000059.1 <> na Primary Assembly 698366 na Scaffold_125 unplaced-scaffold na na JBJHRQ010000062.1 <> na Primary Assembly 610498 na Scaffold_126 unplaced-scaffold na na JBJHRQ010000063.1 <> na Primary Assembly 605677 na Scaffold_127 unplaced-scaffold na na JBJHRQ010000064.1 <> na Primary Assembly 581720 na Scaffold_131 unplaced-scaffold na na JBJHRQ010000065.1 <> na Primary Assembly 539501 na Scaffold_81 unplaced-scaffold na na JBJHRQ010000066.1 <> na Primary Assembly 527248 na Scaffold_132 unplaced-scaffold na na JBJHRQ010000067.1 <> na Primary Assembly 514622 na Scaffold_133 unplaced-scaffold na na JBJHRQ010000068.1 <> na Primary Assembly 511435 na Scaffold_144 unplaced-scaffold na na JBJHRQ010000071.1 <> na Primary Assembly 366112 na Scaffold_145 unplaced-scaffold na na JBJHRQ010000072.1 <> na Primary Assembly 363106 na Scaffold_147 unplaced-scaffold na na JBJHRQ010000073.1 <> na Primary Assembly 346551 na Scaffold_149 unplaced-scaffold na na JBJHRQ010000074.1 <> na Primary Assembly 345021 na Scaffold_150 unplaced-scaffold na na JBJHRQ010000075.1 <> na Primary Assembly 325035 na Scaffold_151 unplaced-scaffold na na JBJHRQ010000076.1 <> na Primary Assembly 322914 na Scaffold_154 unplaced-scaffold na na JBJHRQ010000077.1 <> na Primary Assembly 294084 na Scaffold_156 unplaced-scaffold na na JBJHRQ010000078.1 <> na Primary Assembly 292877 na Scaffold_157 unplaced-scaffold na na JBJHRQ010000079.1 <> na Primary Assembly 292345 na Scaffold_159 unplaced-scaffold na na JBJHRQ010000080.1 <> na Primary Assembly 279843 na Scaffold_161 unplaced-scaffold na na JBJHRQ010000081.1 <> na Primary Assembly 275390 na Scaffold_162 unplaced-scaffold na na JBJHRQ010000082.1 <> na Primary Assembly 273585 na Scaffold_165 unplaced-scaffold na na JBJHRQ010000083.1 <> na Primary Assembly 265647 na Scaffold_166 unplaced-scaffold na na JBJHRQ010000084.1 <> na Primary Assembly 265643 na Scaffold_167 unplaced-scaffold na na JBJHRQ010000085.1 <> na Primary Assembly 264612 na Scaffold_169 unplaced-scaffold na na JBJHRQ010000086.1 <> na Primary Assembly 261062 na Scaffold_170 unplaced-scaffold na na JBJHRQ010000087.1 <> na Primary Assembly 258963 na Scaffold_172 unplaced-scaffold na na JBJHRQ010000088.1 <> na Primary Assembly 248540 na Scaffold_175 unplaced-scaffold na na JBJHRQ010000089.1 <> na Primary Assembly 236816 na Scaffold_177 unplaced-scaffold na na JBJHRQ010000090.1 <> na Primary Assembly 234478 na Scaffold_179 unplaced-scaffold na na JBJHRQ010000091.1 <> na Primary Assembly 231838 na Scaffold_181 unplaced-scaffold na na JBJHRQ010000092.1 <> na Primary Assembly 228369 na Scaffold_183 unplaced-scaffold na na JBJHRQ010000093.1 <> na Primary Assembly 226087 na Scaffold_185 unplaced-scaffold na na JBJHRQ010000094.1 <> na Primary Assembly 222934 na Scaffold_186 unplaced-scaffold na na JBJHRQ010000095.1 <> na Primary Assembly 222690 na Scaffold_187 unplaced-scaffold na na JBJHRQ010000096.1 <> na Primary Assembly 222360 na Scaffold_188 unplaced-scaffold na na JBJHRQ010000097.1 <> na Primary Assembly 221855 na Scaffold_189 unplaced-scaffold na na JBJHRQ010000098.1 <> na Primary Assembly 219807 na Scaffold_190 unplaced-scaffold na na JBJHRQ010000099.1 <> na Primary Assembly 218663 na Scaffold_192 unplaced-scaffold na na JBJHRQ010000100.1 <> na Primary Assembly 203964 na Scaffold_194 unplaced-scaffold na na JBJHRQ010000101.1 <> na Primary Assembly 194503 na Scaffold_197 unplaced-scaffold na na JBJHRQ010000102.1 <> na Primary Assembly 190475 na Scaffold_200 unplaced-scaffold na na JBJHRQ010000103.1 <> na Primary Assembly 182975 na Scaffold_202 unplaced-scaffold na na JBJHRQ010000104.1 <> na Primary Assembly 178933 na Scaffold_203 unplaced-scaffold na na JBJHRQ010000105.1 <> na Primary Assembly 177572 na Scaffold_205 unplaced-scaffold na na JBJHRQ010000106.1 <> na Primary Assembly 171644 na Scaffold_206 unplaced-scaffold na na JBJHRQ010000107.1 <> na Primary Assembly 170923 na Scaffold_207 unplaced-scaffold na na JBJHRQ010000108.1 <> na Primary Assembly 167625 na Scaffold_210 unplaced-scaffold na na JBJHRQ010000109.1 <> na Primary Assembly 161577 na Scaffold_218 unplaced-scaffold na na JBJHRQ010000110.1 <> na Primary Assembly 136675 na Scaffold_219 unplaced-scaffold na na JBJHRQ010000111.1 <> na Primary Assembly 134078 na Scaffold_225 unplaced-scaffold na na JBJHRQ010000112.1 <> na Primary Assembly 129659 na Scaffold_227 unplaced-scaffold na na JBJHRQ010000113.1 <> na Primary Assembly 126054 na Scaffold_228 unplaced-scaffold na na JBJHRQ010000114.1 <> na Primary Assembly 126028 na Scaffold_229 unplaced-scaffold na na JBJHRQ010000115.1 <> na Primary Assembly 125250 na Scaffold_230 unplaced-scaffold na na JBJHRQ010000116.1 <> na Primary Assembly 125067 na Scaffold_232 unplaced-scaffold na na JBJHRQ010000117.1 <> na Primary Assembly 117331 na Scaffold_235 unplaced-scaffold na na JBJHRQ010000118.1 <> na Primary Assembly 114782 na Scaffold_236 unplaced-scaffold na na JBJHRQ010000119.1 <> na Primary Assembly 114291 na Scaffold_237 unplaced-scaffold na na JBJHRQ010000120.1 <> na Primary Assembly 110605 na Scaffold_241 unplaced-scaffold na na JBJHRQ010000121.1 <> na Primary Assembly 106572 na Scaffold_243 unplaced-scaffold na na JBJHRQ010000122.1 <> na Primary Assembly 99608 na Scaffold_244 unplaced-scaffold na na JBJHRQ010000123.1 <> na Primary Assembly 96936 na Scaffold_248 unplaced-scaffold na na JBJHRQ010000124.1 <> na Primary Assembly 92068 na Scaffold_251 unplaced-scaffold na na JBJHRQ010000125.1 <> na Primary Assembly 90500 na Scaffold_253 unplaced-scaffold na na JBJHRQ010000126.1 <> na Primary Assembly 86669 na Scaffold_255 unplaced-scaffold na na JBJHRQ010000127.1 <> na Primary Assembly 81825 na Scaffold_256 unplaced-scaffold na na JBJHRQ010000128.1 <> na Primary Assembly 80223 na Scaffold_259 unplaced-scaffold na na JBJHRQ010000129.1 <> na Primary Assembly 77817 na Scaffold_264 unplaced-scaffold na na JBJHRQ010000130.1 <> na Primary Assembly 74738 na Scaffold_267 unplaced-scaffold na na JBJHRQ010000131.1 <> na Primary Assembly 73780 na Scaffold_269 unplaced-scaffold na na JBJHRQ010000132.1 <> na Primary Assembly 70596 na Scaffold_273 unplaced-scaffold na na JBJHRQ010000133.1 <> na Primary Assembly 68017 na Scaffold_276 unplaced-scaffold na na JBJHRQ010000134.1 <> na Primary Assembly 66605 na Scaffold_483 unplaced-scaffold na na JBJHRQ010000135.1 <> na Primary Assembly 65541 na Scaffold_277 unplaced-scaffold na na JBJHRQ010000136.1 <> na Primary Assembly 62876 na Scaffold_279 unplaced-scaffold na na JBJHRQ010000137.1 <> na Primary Assembly 61769 na Scaffold_281 unplaced-scaffold na na JBJHRQ010000138.1 <> na Primary Assembly 60721 na Scaffold_282 unplaced-scaffold na na JBJHRQ010000139.1 <> na Primary Assembly 59788 na Scaffold_283 unplaced-scaffold na na JBJHRQ010000140.1 <> na Primary Assembly 58790 na Scaffold_489 unplaced-scaffold na na JBJHRQ010000141.1 <> na Primary Assembly 56097 na Scaffold_288 unplaced-scaffold na na JBJHRQ010000142.1 <> na Primary Assembly 55032 na Scaffold_491 unplaced-scaffold na na JBJHRQ010000143.1 <> na Primary Assembly 54529 na Scaffold_291 unplaced-scaffold na na JBJHRQ010000144.1 <> na Primary Assembly 53887 na Scaffold_292 unplaced-scaffold na na JBJHRQ010000145.1 <> na Primary Assembly 53190 na Scaffold_295 unplaced-scaffold na na JBJHRQ010000146.1 <> na Primary Assembly 50783 na Scaffold_495 unplaced-scaffold na na JBJHRQ010000147.1 <> na Primary Assembly 49849 na Scaffold_496 unplaced-scaffold na na JBJHRQ010000148.1 <> na Primary Assembly 45826 na Scaffold_301 unplaced-scaffold na na JBJHRQ010000149.1 <> na Primary Assembly 45658 na Scaffold_498 unplaced-scaffold na na JBJHRQ010000150.1 <> na Primary Assembly 45008 na Scaffold_302 unplaced-scaffold na na JBJHRQ010000151.1 <> na Primary Assembly 43773 na Scaffold_500 unplaced-scaffold na na JBJHRQ010000152.1 <> na Primary Assembly 43036 na Scaffold_304 unplaced-scaffold na na JBJHRQ010000153.1 <> na Primary Assembly 42566 na Scaffold_502 unplaced-scaffold na na JBJHRQ010000154.1 <> na Primary Assembly 41064 na Scaffold_305 unplaced-scaffold na na JBJHRQ010000155.1 <> na Primary Assembly 41047 na Scaffold_312 unplaced-scaffold na na JBJHRQ010000156.1 <> na Primary Assembly 36446 na Scaffold_315 unplaced-scaffold na na JBJHRQ010000157.1 <> na Primary Assembly 34457 na Scaffold_316 unplaced-scaffold na na JBJHRQ010000158.1 <> na Primary Assembly 32759 na Scaffold_507 unplaced-scaffold na na JBJHRQ010000159.1 <> na Primary Assembly 30633 na Scaffold_508 unplaced-scaffold na na JBJHRQ010000160.1 <> na Primary Assembly 30078 na Scaffold_509 unplaced-scaffold na na JBJHRQ010000161.1 <> na Primary Assembly 29343 na