# Assembly name: bLonStr1.pat # Organism name: Lonchura striata (white-rumped munia) # Isolate: bLonStr1 # Sex: male # Taxid: 40157 # BioSample: SAMN44779081 # BioProject: PRJNA1186963 # Submitter: Vertebrate Genomes Project # Date: 2024-12-17 # Assembly type: haploid (paternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBJHRR01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.9 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 69.0x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_046129705.1 # Linked assembly: GCA_046129695.1 (maternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_046129735.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM100659.1 <> na Primary Assembly 157070485 na SUPER_2 assembled-molecule 2 Chromosome CM100660.1 <> na Primary Assembly 111316233 na SUPER_3 assembled-molecule 3 Chromosome CM100661.1 <> na Primary Assembly 114731601 na SUPER_4 assembled-molecule 4 Chromosome CM100662.1 <> na Primary Assembly 73617835 na SUPER_5 assembled-molecule 5 Chromosome CM100663.1 <> na Primary Assembly 71850231 na SUPER_6 assembled-molecule 6 Chromosome CM100664.1 <> na Primary Assembly 72614999 na SUPER_7 assembled-molecule 7 Chromosome CM100665.1 <> na Primary Assembly 38131852 na SUPER_8 assembled-molecule 8 Chromosome CM100666.1 <> na Primary Assembly 39434117 na SUPER_9 assembled-molecule 9 Chromosome CM100667.1 <> na Primary Assembly 31544151 na SUPER_10 assembled-molecule 10 Chromosome CM100668.1 <> na Primary Assembly 27778962 na SUPER_11 assembled-molecule 11 Chromosome CM100669.1 <> na Primary Assembly 24373625 na SUPER_12 assembled-molecule 12 Chromosome CM100670.1 <> na Primary Assembly 23444233 na SUPER_13 assembled-molecule 13 Chromosome CM100671.1 <> na Primary Assembly 24938967 na SUPER_14 assembled-molecule 14 Chromosome CM100672.1 <> na Primary Assembly 22306510 na SUPER_15 assembled-molecule 15 Chromosome CM100673.1 <> na Primary Assembly 20123025 na SUPER_16 assembled-molecule 16 Chromosome CM100674.1 <> na Primary Assembly 14968701 na SUPER_17 assembled-molecule 17 Chromosome CM100675.1 <> na Primary Assembly 15090189 na SUPER_18 assembled-molecule 18 Chromosome CM100676.1 <> na Primary Assembly 17034625 na SUPER_19 assembled-molecule 19 Chromosome CM100677.1 <> na Primary Assembly 13503188 na SUPER_20 assembled-molecule 20 Chromosome CM100678.1 <> na Primary Assembly 11210296 na SUPER_21 assembled-molecule 21 Chromosome CM100679.1 <> na Primary Assembly 11963212 na SUPER_22 assembled-molecule 22 Chromosome CM100680.1 <> na Primary Assembly 14015290 na SUPER_23 assembled-molecule 23 Chromosome CM100681.1 <> na Primary Assembly 9033522 na SUPER_24 assembled-molecule 24 Chromosome CM100682.1 <> na Primary Assembly 5173961 na SUPER_25 assembled-molecule 25 Chromosome CM100683.1 <> na Primary Assembly 8478236 na SUPER_26 assembled-molecule 26 Chromosome CM100684.1 <> na Primary Assembly 10559826 na SUPER_27 assembled-molecule 27 Chromosome CM100685.1 <> na Primary Assembly 3289930 na SUPER_28 assembled-molecule 28 Chromosome CM100686.1 <> na Primary Assembly 4988366 na SUPER_29 assembled-molecule 29 Chromosome CM100687.1 <> na Primary Assembly 6121583 na SUPER_30 assembled-molecule 30 Chromosome CM100688.1 <> na Primary Assembly 9246939 na SUPER_31 assembled-molecule 31 Chromosome CM100689.1 <> na Primary Assembly 7008879 na SUPER_32 assembled-molecule 32 Chromosome CM100690.1 <> na Primary Assembly 7018767 na SUPER_33 assembled-molecule 33 Chromosome CM100691.1 <> na Primary Assembly 5250351 na SUPER_34 assembled-molecule 34 Chromosome CM100692.1 <> na Primary Assembly 6537620 na SUPER_35 assembled-molecule 35 Chromosome CM100693.1 <> na Primary Assembly 4391137 na SUPER_36 assembled-molecule 36 Chromosome CM100694.1 <> na Primary Assembly 3656649 na SUPER_37 assembled-molecule 37 Chromosome CM100695.1 <> na Primary Assembly 4692461 na SUPER_38 assembled-molecule 38 Chromosome CM100696.1 <> na Primary Assembly 1936494 na SUPER_39 assembled-molecule 39 Chromosome CM100697.1 <> na Primary Assembly 369165 na SUPER_Z assembled-molecule Z Chromosome CM100698.1 <> na Primary Assembly 87576289 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBJHRR010000059.1 <> na Primary Assembly 919913 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome JBJHRR010000051.1 <> na Primary Assembly 1228326 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JBJHRR010000054.1 <> na Primary Assembly 1127411 na SUPER_10_unloc_2 unlocalized-scaffold 10 Chromosome JBJHRR010000068.1 <> na Primary Assembly 679588 na SUPER_10_unloc_1 unlocalized-scaffold 10 Chromosome JBJHRR010000073.1 <> na Primary Assembly 519171 na SUPER_12_unloc_1 unlocalized-scaffold 12 Chromosome JBJHRR010000067.1 <> na Primary Assembly 695691 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JBJHRR010000065.1 <> na Primary Assembly 733688 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JBJHRR010000080.1 <> na Primary Assembly 396207 na SUPER_28_unloc_1 unlocalized-scaffold 28 Chromosome JBJHRR010000083.1 <> na Primary Assembly 375832 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JBJHRR010000105.1 <> na Primary Assembly 209666 na Scaffold_83 unplaced-scaffold na na JBJHRR010000037.1 <> na Primary Assembly 4044937 na Scaffold_84 unplaced-scaffold na na JBJHRR010000040.1 <> na Primary Assembly 3234844 na Scaffold_86 unplaced-scaffold na na JBJHRR010000041.1 <> na Primary Assembly 2041142 na Scaffold_87 unplaced-scaffold na na JBJHRR010000042.1 <> na Primary Assembly 1973779 na Scaffold_88 unplaced-scaffold na na JBJHRR010000043.1 <> na Primary Assembly 1968149 na Scaffold_89 unplaced-scaffold na na JBJHRR010000045.1 <> na Primary Assembly 1931735 na Scaffold_93 unplaced-scaffold na na JBJHRR010000046.1 <> na Primary Assembly 1397762 na Scaffold_94 unplaced-scaffold na na JBJHRR010000047.1 <> na Primary Assembly 1350970 na Scaffold_95 unplaced-scaffold na na JBJHRR010000048.1 <> na Primary Assembly 1316977 na Scaffold_96 unplaced-scaffold na na JBJHRR010000049.1 <> na Primary Assembly 1289915 na Scaffold_98 unplaced-scaffold na na JBJHRR010000050.1 <> na Primary Assembly 1272749 na Scaffold_101 unplaced-scaffold na na JBJHRR010000052.1 <> na Primary Assembly 1186041 na Scaffold_102 unplaced-scaffold na na JBJHRR010000053.1 <> na Primary Assembly 1152238 na Scaffold_103 unplaced-scaffold na na JBJHRR010000055.1 <> na Primary Assembly 1127373 na Scaffold_104 unplaced-scaffold na na JBJHRR010000056.1 <> na Primary Assembly 1060321 na Scaffold_105 unplaced-scaffold na na JBJHRR010000057.1 <> na Primary Assembly 1036042 na Scaffold_107 unplaced-scaffold na na JBJHRR010000058.1 <> na Primary Assembly 980439 na Scaffold_108 unplaced-scaffold na na JBJHRR010000060.1 <> na Primary Assembly 917909 na Scaffold_110 unplaced-scaffold na na JBJHRR010000061.1 <> na Primary Assembly 862558 na Scaffold_112 unplaced-scaffold na na JBJHRR010000062.1 <> na Primary Assembly 852574 na Scaffold_119 unplaced-scaffold na na JBJHRR010000063.1 <> na Primary Assembly 740138 na Scaffold_120 unplaced-scaffold na na JBJHRR010000064.1 <> na Primary Assembly 739903 na Scaffold_122 unplaced-scaffold na na JBJHRR010000066.1 <> na Primary Assembly 704921 na Scaffold_124 unplaced-scaffold na na JBJHRR010000069.1 <> na Primary Assembly 666194 na Scaffold_128 unplaced-scaffold na na JBJHRR010000070.1 <> na Primary Assembly 561926 na Scaffold_129 unplaced-scaffold na na JBJHRR010000071.1 <> na Primary Assembly 552802 na Scaffold_130 unplaced-scaffold na na JBJHRR010000072.1 <> na Primary Assembly 540739 na Scaffold_134 unplaced-scaffold na na JBJHRR010000074.1 <> na Primary Assembly 505818 na Scaffold_135 unplaced-scaffold na na JBJHRR010000075.1 <> na Primary Assembly 465943 na Scaffold_136 unplaced-scaffold na na JBJHRR010000076.1 <> na Primary Assembly 447950 na Scaffold_137 unplaced-scaffold na na JBJHRR010000077.1 <> na Primary Assembly 414230 na Scaffold_138 unplaced-scaffold na na JBJHRR010000078.1 <> na Primary Assembly 412507 na Scaffold_139 unplaced-scaffold na na JBJHRR010000079.1 <> na Primary Assembly 399403 na Scaffold_140 unplaced-scaffold na na JBJHRR010000081.1 <> na Primary Assembly 389615 na Scaffold_141 unplaced-scaffold na na JBJHRR010000082.1 <> na Primary Assembly 384127 na Scaffold_142 unplaced-scaffold na na JBJHRR010000084.1 <> na Primary Assembly 370460 na Scaffold_143 unplaced-scaffold na na JBJHRR010000086.1 <> na Primary Assembly 368574 na Scaffold_146 unplaced-scaffold na na JBJHRR010000087.1 <> na Primary Assembly 362352 na Scaffold_148 unplaced-scaffold na na JBJHRR010000088.1 <> na Primary Assembly 346484 na Scaffold_152 unplaced-scaffold na na JBJHRR010000089.1 <> na Primary Assembly 309115 na Scaffold_153 unplaced-scaffold na na JBJHRR010000090.1 <> na Primary Assembly 308803 na Scaffold_155 unplaced-scaffold na na JBJHRR010000091.1 <> na Primary Assembly 293715 na Scaffold_158 unplaced-scaffold na na JBJHRR010000092.1 <> na Primary Assembly 280128 na Scaffold_160 unplaced-scaffold na na JBJHRR010000093.1 <> na Primary Assembly 277254 na Scaffold_163 unplaced-scaffold na na JBJHRR010000094.1 <> na Primary Assembly 270860 na Scaffold_164 unplaced-scaffold na na JBJHRR010000095.1 <> na Primary Assembly 267137 na Scaffold_168 unplaced-scaffold na na JBJHRR010000096.1 <> na Primary Assembly 264184 na Scaffold_171 unplaced-scaffold na na JBJHRR010000097.1 <> na Primary Assembly 258636 na Scaffold_173 unplaced-scaffold na na JBJHRR010000098.1 <> na Primary Assembly 242907 na Scaffold_174 unplaced-scaffold na na JBJHRR010000099.1 <> na Primary Assembly 240573 na Scaffold_176 unplaced-scaffold na na JBJHRR010000100.1 <> na Primary Assembly 236816 na Scaffold_178 unplaced-scaffold na na JBJHRR010000101.1 <> na Primary Assembly 233513 na Scaffold_180 unplaced-scaffold na na JBJHRR010000102.1 <> na Primary Assembly 228562 na Scaffold_182 unplaced-scaffold na na JBJHRR010000103.1 <> na Primary Assembly 227003 na Scaffold_184 unplaced-scaffold na na JBJHRR010000104.1 <> na Primary Assembly 225459 na Scaffold_191 unplaced-scaffold na na JBJHRR010000106.1 <> na Primary Assembly 206320 na Scaffold_193 unplaced-scaffold na na JBJHRR010000107.1 <> na Primary Assembly 199208 na Scaffold_195 unplaced-scaffold na na JBJHRR010000108.1 <> na Primary Assembly 194213 na Scaffold_196 unplaced-scaffold na na JBJHRR010000109.1 <> na Primary Assembly 193788 na Scaffold_198 unplaced-scaffold na na JBJHRR010000110.1 <> na Primary Assembly 190292 na Scaffold_199 unplaced-scaffold na na JBJHRR010000111.1 <> na Primary Assembly 187335 na Scaffold_201 unplaced-scaffold na na JBJHRR010000112.1 <> na Primary Assembly 179575 na Scaffold_204 unplaced-scaffold na na JBJHRR010000113.1 <> na Primary Assembly 177024 na Scaffold_208 unplaced-scaffold na na JBJHRR010000114.1 <> na Primary Assembly 166123 na Scaffold_209 unplaced-scaffold na na JBJHRR010000115.1 <> na Primary Assembly 164519 na Scaffold_211 unplaced-scaffold na na JBJHRR010000116.1 <> na Primary Assembly 160520 na Scaffold_212 unplaced-scaffold na na JBJHRR010000117.1 <> na Primary Assembly 159683 na Scaffold_213 unplaced-scaffold na na JBJHRR010000118.1 <> na Primary Assembly 155390 na Scaffold_214 unplaced-scaffold na na JBJHRR010000119.1 <> na Primary Assembly 151949 na Scaffold_215 unplaced-scaffold na na JBJHRR010000120.1 <> na Primary Assembly 145841 na Scaffold_216 unplaced-scaffold na na JBJHRR010000121.1 <> na Primary Assembly 144910 na Scaffold_217 unplaced-scaffold na na JBJHRR010000122.1 <> na Primary Assembly 137102 na Scaffold_220 unplaced-scaffold na na JBJHRR010000123.1 <> na Primary Assembly 133375 na Scaffold_221 unplaced-scaffold na na JBJHRR010000124.1 <> na Primary Assembly 132735 na Scaffold_222 unplaced-scaffold na na JBJHRR010000125.1 <> na Primary Assembly 132510 na Scaffold_223 unplaced-scaffold na na JBJHRR010000126.1 <> na Primary Assembly 132080 na Scaffold_224 unplaced-scaffold na na JBJHRR010000127.1 <> na Primary Assembly 130091 na Scaffold_226 unplaced-scaffold na na JBJHRR010000128.1 <> na Primary Assembly 128815 na Scaffold_231 unplaced-scaffold na na JBJHRR010000129.1 <> na Primary Assembly 121554 na Scaffold_233 unplaced-scaffold na na JBJHRR010000130.1 <> na Primary Assembly 116667 na Scaffold_234 unplaced-scaffold na na JBJHRR010000131.1 <> na Primary Assembly 115372 na Scaffold_238 unplaced-scaffold na na JBJHRR010000132.1 <> na Primary Assembly 110225 na Scaffold_239 unplaced-scaffold na na JBJHRR010000133.1 <> na Primary Assembly 109291 na Scaffold_240 unplaced-scaffold na na JBJHRR010000134.1 <> na Primary Assembly 106661 na Scaffold_242 unplaced-scaffold na na JBJHRR010000135.1 <> na Primary Assembly 100780 na Scaffold_245 unplaced-scaffold na na JBJHRR010000136.1 <> na Primary Assembly 95139 na Scaffold_246 unplaced-scaffold na na JBJHRR010000137.1 <> na Primary Assembly 94901 na Scaffold_247 unplaced-scaffold na na JBJHRR010000138.1 <> na Primary Assembly 93991 na Scaffold_249 unplaced-scaffold na na JBJHRR010000139.1 <> na Primary Assembly 91278 na Scaffold_250 unplaced-scaffold na na JBJHRR010000140.1 <> na Primary Assembly 91200 na Scaffold_252 unplaced-scaffold na na JBJHRR010000141.1 <> na Primary Assembly 87227 na Scaffold_254 unplaced-scaffold na na JBJHRR010000142.1 <> na Primary Assembly 86193 na Scaffold_257 unplaced-scaffold na na JBJHRR010000143.1 <> na Primary Assembly 79753 na Scaffold_258 unplaced-scaffold na na JBJHRR010000144.1 <> na Primary Assembly 78397 na Scaffold_260 unplaced-scaffold na na JBJHRR010000145.1 <> na Primary Assembly 76410 na Scaffold_261 unplaced-scaffold na na JBJHRR010000146.1 <> na Primary Assembly 76231 na Scaffold_262 unplaced-scaffold na na JBJHRR010000147.1 <> na Primary Assembly 75576 na Scaffold_263 unplaced-scaffold na na JBJHRR010000148.1 <> na Primary Assembly 74746 na Scaffold_265 unplaced-scaffold na na JBJHRR010000149.1 <> na Primary Assembly 74516 na Scaffold_266 unplaced-scaffold na na JBJHRR010000150.1 <> na Primary Assembly 74116 na Scaffold_268 unplaced-scaffold na na JBJHRR010000151.1 <> na Primary Assembly 70753 na Scaffold_270 unplaced-scaffold na na JBJHRR010000152.1 <> na Primary Assembly 69907 na Scaffold_271 unplaced-scaffold na na JBJHRR010000153.1 <> na Primary Assembly 69728 na Scaffold_272 unplaced-scaffold na na JBJHRR010000154.1 <> na Primary Assembly 68647 na Scaffold_274 unplaced-scaffold na na JBJHRR010000155.1 <> na Primary Assembly 67018 na Scaffold_275 unplaced-scaffold na na JBJHRR010000156.1 <> na Primary Assembly 66857 na Scaffold_278 unplaced-scaffold na na JBJHRR010000157.1 <> na Primary Assembly 61883 na Scaffold_280 unplaced-scaffold na na JBJHRR010000158.1 <> na Primary Assembly 61461 na Scaffold_705 unplaced-scaffold na na JBJHRR010000159.1 <> na Primary Assembly 60721 na Scaffold_284 unplaced-scaffold na na JBJHRR010000160.1 <> na Primary Assembly 58016 na Scaffold_285 unplaced-scaffold na na JBJHRR010000161.1 <> na Primary Assembly 56254 na Scaffold_286 unplaced-scaffold na na JBJHRR010000162.1 <> na Primary Assembly 56065 na Scaffold_287 unplaced-scaffold na na JBJHRR010000163.1 <> na Primary Assembly 55297 na Scaffold_289 unplaced-scaffold na na JBJHRR010000164.1 <> na Primary Assembly 54162 na Scaffold_290 unplaced-scaffold na na JBJHRR010000165.1 <> na Primary Assembly 54140 na Scaffold_712 unplaced-scaffold na na JBJHRR010000166.1 <> na Primary Assembly 53420 na Scaffold_293 unplaced-scaffold na na JBJHRR010000167.1 <> na Primary Assembly 52158 na Scaffold_294 unplaced-scaffold na na JBJHRR010000168.1 <> na Primary Assembly 52121 na Scaffold_715 unplaced-scaffold na na JBJHRR010000169.1 <> na Primary Assembly 51342 na Scaffold_296 unplaced-scaffold na na JBJHRR010000170.1 <> na Primary Assembly 50145 na Scaffold_297 unplaced-scaffold na na JBJHRR010000171.1 <> na Primary Assembly 49632 na Scaffold_298 unplaced-scaffold na na JBJHRR010000172.1 <> na Primary Assembly 49485 na Scaffold_719 unplaced-scaffold na na JBJHRR010000173.1 <> na Primary Assembly 49008 na Scaffold_299 unplaced-scaffold na na JBJHRR010000174.1 <> na Primary Assembly 48404 na Scaffold_300 unplaced-scaffold na na JBJHRR010000175.1 <> na Primary Assembly 48272 na Scaffold_303 unplaced-scaffold na na JBJHRR010000176.1 <> na Primary Assembly 43534 na Scaffold_306 unplaced-scaffold na na JBJHRR010000177.1 <> na Primary Assembly 40558 na Scaffold_724 unplaced-scaffold na na JBJHRR010000178.1 <> na Primary Assembly 39637 na Scaffold_307 unplaced-scaffold na na JBJHRR010000179.1 <> na Primary Assembly 39569 na Scaffold_726 unplaced-scaffold na na JBJHRR010000180.1 <> na Primary Assembly 39366 na Scaffold_308 unplaced-scaffold na na JBJHRR010000181.1 <> na Primary Assembly 39272 na Scaffold_728 unplaced-scaffold na na JBJHRR010000182.1 <> na Primary Assembly 39220 na Scaffold_309 unplaced-scaffold na na JBJHRR010000183.1 <> na Primary Assembly 39147 na Scaffold_730 unplaced-scaffold na na JBJHRR010000184.1 <> na Primary Assembly 38599 na Scaffold_310 unplaced-scaffold na na JBJHRR010000185.1 <> na Primary Assembly 38394 na Scaffold_732 unplaced-scaffold na na JBJHRR010000186.1 <> na Primary Assembly 36901 na Scaffold_311 unplaced-scaffold na na JBJHRR010000187.1 <> na Primary Assembly 36631 na Scaffold_734 unplaced-scaffold na na JBJHRR010000188.1 <> na Primary Assembly 36532 na Scaffold_735 unplaced-scaffold na na JBJHRR010000189.1 <> na Primary Assembly 36319 na Scaffold_313 unplaced-scaffold na na JBJHRR010000190.1 <> na Primary Assembly 36206 na Scaffold_737 unplaced-scaffold na na JBJHRR010000191.1 <> na Primary Assembly 35304 na Scaffold_314 unplaced-scaffold na na JBJHRR010000192.1 <> na Primary Assembly 34896 na Scaffold_739 unplaced-scaffold na na JBJHRR010000193.1 <> na Primary Assembly 34487 na Scaffold_740 unplaced-scaffold na na JBJHRR010000194.1 <> na Primary Assembly 34121 na Scaffold_741 unplaced-scaffold na na JBJHRR010000195.1 <> na Primary Assembly 32195 na Scaffold_317 unplaced-scaffold na na JBJHRR010000196.1 <> na Primary Assembly 30300 na Scaffold_318 unplaced-scaffold na na JBJHRR010000197.1 <> na Primary Assembly 29663 na Scaffold_744 unplaced-scaffold na na JBJHRR010000198.1 <> na Primary Assembly 29343 na Scaffold_319 unplaced-scaffold na na JBJHRR010000199.1 <> na Primary Assembly 27909 na Scaffold_746 unplaced-scaffold na na JBJHRR010000200.1 <> na Primary Assembly 27427 na Scaffold_320 unplaced-scaffold na na JBJHRR010000201.1 <> na Primary Assembly 26810 na Scaffold_321 unplaced-scaffold na na JBJHRR010000202.1 <> na Primary Assembly 17269 na