# Assembly name: rBraPum1.hap2 # Organism name: Bradypodion pumilum (lizards & snakes) # Infraspecific name: ecotype=Western Cape Province # Isolate: JTBG20231 # Sex: male # Taxid: 179887 # BioSample: SAMN35825189 # BioProject: PRJNA1172113 # Submitter: Vertebrate Genomes Project # Date: 2025-12-17 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFLG02 # Assembly method: HiFiasm + Hi-C phasing v. 0.19.9 + galaxy0; YaHS v. 1.2a.2 + galaxy1 # Expected final version: No # Genome coverage: 51.1x # Sequencing technology: PacBio Sequel II HiFi; Dovetail Omni-C # GenBank assembly accession: GCA_047715955.2 # Linked assembly: GCA_047715975.2 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047715965.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1_v2 assembled-molecule 1 Chromosome CM106084.1 <> na Primary Assembly 519964437 na SUPER_2_v2 assembled-molecule 2 Chromosome CM106085.1 <> na Primary Assembly 476613123 na SUPER_3_v2 assembled-molecule 3 Chromosome CM106086.1 <> na Primary Assembly 388707816 na SUPER_4_v2 assembled-molecule 4 Chromosome CM106087.1 <> na Primary Assembly 348680079 na SUPER_5_v2 assembled-molecule 5 Chromosome CM106088.1 <> na Primary Assembly 268343309 na SUPER_6_v2 assembled-molecule 6 Chromosome CM106089.1 <> na Primary Assembly 146123549 na SUPER_7_v2 assembled-molecule 7 Chromosome CM106090.1 <> na Primary Assembly 46442534 na SUPER_8_v2 assembled-molecule 8 Chromosome CM106091.1 <> na Primary Assembly 43628960 na SUPER_9_v2 assembled-molecule 9 Chromosome CM106092.1 <> na Primary Assembly 42888479 na SUPER_10_v2 assembled-molecule 10 Chromosome CM106100.1 <> na Primary Assembly 37095987 na SUPER_11_v2 assembled-molecule 11 Chromosome CM106093.1 <> na Primary Assembly 28444465 na SUPER_12_v2 assembled-molecule 12 Chromosome CM106094.1 <> na Primary Assembly 26084294 na SUPER_13_v2 assembled-molecule 13 Chromosome CM106095.1 <> na Primary Assembly 21450492 na SUPER_14_v2 assembled-molecule 14 Chromosome CM106096.1 <> na Primary Assembly 16840505 na SUPER_15_v2 assembled-molecule 15 Chromosome CM106097.1 <> na Primary Assembly 16259577 na SUPER_16_v2 assembled-molecule 16 Chromosome CM106098.1 <> na Primary Assembly 15638299 na SUPER_17_v2 assembled-molecule 17 Chromosome CM106099.1 <> na Primary Assembly 12977769 na HAP2_SCAFFOLD_10_v2 unplaced-scaffold na na JBLFLG020000018.1 <> na Primary Assembly 3326666 na HAP2_SCAFFOLD_12_v2 unplaced-scaffold na na JBLFLG020000019.1 <> na Primary Assembly 2286748 na HAP2_SCAFFOLD_13_v2 unplaced-scaffold na na JBLFLG020000020.1 <> na Primary Assembly 1977805 na HAP2_SCAFFOLD_15_v2 unplaced-scaffold na na JBLFLG020000021.1 <> na Primary Assembly 1422512 na HAP2_SCAFFOLD_18_v2 unplaced-scaffold na na JBLFLG020000022.1 <> na Primary Assembly 1095135 na HAP2_SCAFFOLD_19_v2 unplaced-scaffold na na JBLFLG020000023.1 <> na Primary Assembly 1039228 na HAP2_SCAFFOLD_20_v2 unplaced-scaffold na na JBLFLG020000024.1 <> na Primary Assembly 964801 na HAP2_SCAFFOLD_21_v2 unplaced-scaffold na na JBLFLG020000025.1 <> na Primary Assembly 922796 na HAP2_SCAFFOLD_24_v2 unplaced-scaffold na na JBLFLG020000026.1 <> na Primary Assembly 704707 na HAP2_SCAFFOLD_26_v2 unplaced-scaffold na na JBLFLG020000027.1 <> na Primary Assembly 603375 na HAP2_SCAFFOLD_27_v2 unplaced-scaffold na na JBLFLG020000028.1 <> na Primary Assembly 538446 na HAP2_SCAFFOLD_29_v2 unplaced-scaffold na na JBLFLG020000029.1 <> na Primary Assembly 458575 na HAP2_SCAFFOLD_30_v2 unplaced-scaffold na na JBLFLG020000030.1 <> na Primary Assembly 412859 na HAP2_SCAFFOLD_31_v2 unplaced-scaffold na na JBLFLG020000031.1 <> na Primary Assembly 386465 na HAP2_SCAFFOLD_32_v2 unplaced-scaffold na na JBLFLG020000032.1 <> na Primary Assembly 368217 na HAP2_SCAFFOLD_33_v2 unplaced-scaffold na na JBLFLG020000033.1 <> na Primary Assembly 368102 na HAP2_SCAFFOLD_34_v2 unplaced-scaffold na na JBLFLG020000034.1 <> na Primary Assembly 361896 na HAP2_SCAFFOLD_35_v2 unplaced-scaffold na na JBLFLG020000035.1 <> na Primary Assembly 352124 na HAP2_SCAFFOLD_36_v2 unplaced-scaffold na na JBLFLG020000036.1 <> na Primary Assembly 324199 na HAP2_SCAFFOLD_37_v2 unplaced-scaffold na na JBLFLG020000037.1 <> na Primary Assembly 293368 na HAP2_SCAFFOLD_38_v2 unplaced-scaffold na na JBLFLG020000038.1 <> na Primary Assembly 289469 na HAP2_SCAFFOLD_39_v2 unplaced-scaffold na na JBLFLG020000039.1 <> na Primary Assembly 275216 na HAP2_SCAFFOLD_40_v2 unplaced-scaffold na na JBLFLG020000040.1 <> na Primary Assembly 274449 na HAP2_SCAFFOLD_41_v2 unplaced-scaffold na na JBLFLG020000041.1 <> na Primary Assembly 260930 na HAP2_SCAFFOLD_42_v2 unplaced-scaffold na na JBLFLG020000042.1 <> na Primary Assembly 250008 na HAP2_SCAFFOLD_43_v2 unplaced-scaffold na na JBLFLG020000043.1 <> na Primary Assembly 249250 na HAP2_SCAFFOLD_44_v2 unplaced-scaffold na na JBLFLG020000044.1 <> na Primary Assembly 232952 na HAP2_SCAFFOLD_45_v2 unplaced-scaffold na na JBLFLG020000045.1 <> na Primary Assembly 224814 na HAP2_SCAFFOLD_46_v2 unplaced-scaffold na na JBLFLG020000046.1 <> na Primary Assembly 220391 na HAP2_SCAFFOLD_47_v2 unplaced-scaffold na na JBLFLG020000047.1 <> na Primary Assembly 173730 na HAP2_SCAFFOLD_48_v2 unplaced-scaffold na na JBLFLG020000048.1 <> na Primary Assembly 167631 na HAP2_SCAFFOLD_50_v2 unplaced-scaffold na na JBLFLG020000049.1 <> na Primary Assembly 155650 na HAP2_SCAFFOLD_52_v2 unplaced-scaffold na na JBLFLG020000050.1 <> na Primary Assembly 133084 na HAP2_SCAFFOLD_53_v2 unplaced-scaffold na na JBLFLG020000051.1 <> na Primary Assembly 113815 na HAP2_SCAFFOLD_54_v2 unplaced-scaffold na na JBLFLG020000052.1 <> na Primary Assembly 113336 na HAP2_SCAFFOLD_55_v2 unplaced-scaffold na na JBLFLG020000053.1 <> na Primary Assembly 108836 na HAP2_SCAFFOLD_56_v2 unplaced-scaffold na na JBLFLG020000054.1 <> na Primary Assembly 97928 na HAP2_SCAFFOLD_57_v2 unplaced-scaffold na na JBLFLG020000055.1 <> na Primary Assembly 95853 na HAP2_SCAFFOLD_58_v2 unplaced-scaffold na na JBLFLG020000056.1 <> na Primary Assembly 88612 na HAP2_SCAFFOLD_59_v2 unplaced-scaffold na na JBLFLG020000057.1 <> na Primary Assembly 79293 na HAP2_SCAFFOLD_60_v2 unplaced-scaffold na na JBLFLG020000058.1 <> na Primary Assembly 79243 na HAP2_SCAFFOLD_61_v2 unplaced-scaffold na na JBLFLG020000059.1 <> na Primary Assembly 73264 na HAP2_SCAFFOLD_62_v2 unplaced-scaffold na na JBLFLG020000060.1 <> na Primary Assembly 70533 na HAP2_SCAFFOLD_63_v2 unplaced-scaffold na na JBLFLG020000061.1 <> na Primary Assembly 63343 na HAP2_SCAFFOLD_64_v2 unplaced-scaffold na na JBLFLG020000062.1 <> na Primary Assembly 60240 na HAP2_SCAFFOLD_65_v2 unplaced-scaffold na na JBLFLG020000063.1 <> na Primary Assembly 57638 na HAP2_SCAFFOLD_66_v2 unplaced-scaffold na na JBLFLG020000064.1 <> na Primary Assembly 55120 na HAP2_SCAFFOLD_67_v2 unplaced-scaffold na na JBLFLG020000065.1 <> na Primary Assembly 45194 na HAP2_SCAFFOLD_68_v2 unplaced-scaffold na na JBLFLG020000066.1 <> na Primary Assembly 39607 na HAP2_SCAFFOLD_69_v2 unplaced-scaffold na na JBLFLG020000067.1 <> na Primary Assembly 39148 na HAP2_SCAFFOLD_70_v2 unplaced-scaffold na na JBLFLG020000068.1 <> na Primary Assembly 38217 na HAP2_SCAFFOLD_71_v2 unplaced-scaffold na na JBLFLG020000069.1 <> na Primary Assembly 37935 na HAP2_SCAFFOLD_72_v2 unplaced-scaffold na na JBLFLG020000070.1 <> na Primary Assembly 34667 na HAP2_SCAFFOLD_73_v2 unplaced-scaffold na na JBLFLG020000071.1 <> na Primary Assembly 34568 na HAP2_SCAFFOLD_74_v2 unplaced-scaffold na na JBLFLG020000072.1 <> na Primary Assembly 34341 na HAP2_SCAFFOLD_75_v2 unplaced-scaffold na na JBLFLG020000073.1 <> na Primary Assembly 33331 na HAP2_SCAFFOLD_77_v2 unplaced-scaffold na na JBLFLG020000074.1 <> na Primary Assembly 31483 na HAP2_SCAFFOLD_78_v2 unplaced-scaffold na na JBLFLG020000075.1 <> na Primary Assembly 31335 na HAP2_SCAFFOLD_79_v2 unplaced-scaffold na na JBLFLG020000076.1 <> na Primary Assembly 30857 na HAP2_SCAFFOLD_80_v2 unplaced-scaffold na na JBLFLG020000077.1 <> na Primary Assembly 30562 na HAP2_SCAFFOLD_81_v2 unplaced-scaffold na na JBLFLG020000078.1 <> na Primary Assembly 29529 na HAP2_SCAFFOLD_82_v2 unplaced-scaffold na na JBLFLG020000079.1 <> na Primary Assembly 28189 na HAP2_SCAFFOLD_83_v2 unplaced-scaffold na na JBLFLG020000080.1 <> na Primary Assembly 27749 na HAP2_SCAFFOLD_84_v2 unplaced-scaffold na na JBLFLG020000081.1 <> na Primary Assembly 27375 na HAP2_SCAFFOLD_85_v2 unplaced-scaffold na na JBLFLG020000082.1 <> na Primary Assembly 23047 na