# Assembly name:  Cmac_reference.fasta
# Organism name:  Cochliomyia macellaria (secondary screw-worm)
# Isolate:  Kerr-NC-F1
# Sex:  male
# Taxid:          66361
# BioSample:      SAMN47485997
# BioProject:     PRJNA1254291
# Submitter:      USDA-Agricultural Research Service, USA
# Date:           2025-09-12
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBOJLO01
# Assembly method: Hifiasm v. 0.19.8
# Expected final version: yes
# Genome coverage: 57x
# Sequencing technology: PacBio Sequel IIe
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_052576185.1
# Linked assembly: GCA_052576165.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_052576205.1		Primary Assembly
## GCA_052576215.1		non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
Chromosome1	assembled-molecule	1	Chromosome	CM127281.1	<>	na	Primary Assembly	129122140	na
Chromosome2	assembled-molecule	2	Chromosome	CM127282.1	<>	na	Primary Assembly	102561840	na
Chromosome3	assembled-molecule	3	Chromosome	CM127283.1	<>	na	Primary Assembly	103608352	na
Chromosome4	assembled-molecule	4	Chromosome	CM127284.1	<>	na	Primary Assembly	104309685	na
Chromosome5	assembled-molecule	5	Chromosome	CM127285.1	<>	na	Primary Assembly	92196900	na
ChromosomeX	assembled-molecule	X	Chromosome	CM127286.1	<>	na	Primary Assembly	8820982	na
ChromosomeY	assembled-molecule	Y	Chromosome	CM127287.1	<>	na	Primary Assembly	2742285	na
ctg00000033.1	unplaced-scaffold	na	na	JBOJLO010000008.1	<>	na	Primary Assembly	651744	na
ctg00000034.1	unplaced-scaffold	na	na	JBOJLO010000009.1	<>	na	Primary Assembly	593894	na
ctg00000035.1	unplaced-scaffold	na	na	JBOJLO010000010.1	<>	na	Primary Assembly	530092	na
ctg00000036.1	unplaced-scaffold	na	na	JBOJLO010000011.1	<>	na	Primary Assembly	455256	na
ctg00000037.1	unplaced-scaffold	na	na	JBOJLO010000012.1	<>	na	Primary Assembly	324193	na
ctg00000038.1	unplaced-scaffold	na	na	JBOJLO010000013.1	<>	na	Primary Assembly	319170	na
ctg00000039.1	unplaced-scaffold	na	na	JBOJLO010000014.1	<>	na	Primary Assembly	280136	na
ctg00000040.1	unplaced-scaffold	na	na	JBOJLO010000015.1	<>	na	Primary Assembly	266276	na
ctg00000041.1	unplaced-scaffold	na	na	JBOJLO010000016.1	<>	na	Primary Assembly	245366	na
ctg00000042.1	unplaced-scaffold	na	na	JBOJLO010000017.1	<>	na	Primary Assembly	220180	na
ctg00000043.1	unplaced-scaffold	na	na	JBOJLO010000018.1	<>	na	Primary Assembly	197710	na
ctg00000044.1	unplaced-scaffold	na	na	JBOJLO010000019.1	<>	na	Primary Assembly	179261	na
ctg00000045.1	unplaced-scaffold	na	na	JBOJLO010000020.1	<>	na	Primary Assembly	167357	na
ctg00000046.1	unplaced-scaffold	na	na	JBOJLO010000021.1	<>	na	Primary Assembly	163214	na
ctg00000047.1	unplaced-scaffold	na	na	JBOJLO010000022.1	<>	na	Primary Assembly	162077	na
ctg00000048.1	unplaced-scaffold	na	na	JBOJLO010000023.1	<>	na	Primary Assembly	157194	na
ctg00000049.1	unplaced-scaffold	na	na	JBOJLO010000024.1	<>	na	Primary Assembly	153348	na
ctg00000051.1	unplaced-scaffold	na	na	JBOJLO010000025.1	<>	na	Primary Assembly	132664	na
ctg00000052.1	unplaced-scaffold	na	na	JBOJLO010000026.1	<>	na	Primary Assembly	126118	na
ctg00000053.1	unplaced-scaffold	na	na	JBOJLO010000027.1	<>	na	Primary Assembly	115814	na
ctg00000054.1	unplaced-scaffold	na	na	JBOJLO010000028.1	<>	na	Primary Assembly	103675	na
ctg00000056.1	unplaced-scaffold	na	na	JBOJLO010000029.1	<>	na	Primary Assembly	93580	na
ctg00000057.1	unplaced-scaffold	na	na	JBOJLO010000030.1	<>	na	Primary Assembly	92541	na
ctg00000058.1	unplaced-scaffold	na	na	JBOJLO010000031.1	<>	na	Primary Assembly	92244	na
ctg00000059.1	unplaced-scaffold	na	na	JBOJLO010000032.1	<>	na	Primary Assembly	91225	na
ctg00000062.1	unplaced-scaffold	na	na	JBOJLO010000033.1	<>	na	Primary Assembly	85692	na
ctg00000063.1	unplaced-scaffold	na	na	JBOJLO010000034.1	<>	na	Primary Assembly	84294	na
ctg00000064.1	unplaced-scaffold	na	na	JBOJLO010000035.1	<>	na	Primary Assembly	83686	na
ctg00000065.1	unplaced-scaffold	na	na	JBOJLO010000036.1	<>	na	Primary Assembly	82259	na
ctg00000066.1	unplaced-scaffold	na	na	JBOJLO010000037.1	<>	na	Primary Assembly	80533	na
ctg00000067.1	unplaced-scaffold	na	na	JBOJLO010000038.1	<>	na	Primary Assembly	79794	na
ctg00000069.1	unplaced-scaffold	na	na	JBOJLO010000039.1	<>	na	Primary Assembly	79008	na
ctg00000070.1	unplaced-scaffold	na	na	JBOJLO010000040.1	<>	na	Primary Assembly	77500	na
ctg00000071.1	unplaced-scaffold	na	na	JBOJLO010000041.1	<>	na	Primary Assembly	76183	na
ctg00000072.1	unplaced-scaffold	na	na	JBOJLO010000042.1	<>	na	Primary Assembly	75463	na
ctg00000073.1	unplaced-scaffold	na	na	JBOJLO010000043.1	<>	na	Primary Assembly	74816	na
ctg00000074.1	unplaced-scaffold	na	na	JBOJLO010000044.1	<>	na	Primary Assembly	74609	na
ctg00000076.1	unplaced-scaffold	na	na	JBOJLO010000045.1	<>	na	Primary Assembly	72952	na
ctg00000077.1	unplaced-scaffold	na	na	JBOJLO010000046.1	<>	na	Primary Assembly	70760	na
ctg00000078.1	unplaced-scaffold	na	na	JBOJLO010000047.1	<>	na	Primary Assembly	70677	na
ctg00000083.1	unplaced-scaffold	na	na	JBOJLO010000048.1	<>	na	Primary Assembly	64928	na
ctg00000084.1	unplaced-scaffold	na	na	JBOJLO010000049.1	<>	na	Primary Assembly	63718	na
ctg00000085.1	unplaced-scaffold	na	na	JBOJLO010000050.1	<>	na	Primary Assembly	62434	na
ctg00000087.1	unplaced-scaffold	na	na	JBOJLO010000051.1	<>	na	Primary Assembly	60127	na
ctg00000089.1	unplaced-scaffold	na	na	JBOJLO010000052.1	<>	na	Primary Assembly	59670	na
ctg00000090.1	unplaced-scaffold	na	na	JBOJLO010000053.1	<>	na	Primary Assembly	59296	na
ctg00000091.1	unplaced-scaffold	na	na	JBOJLO010000054.1	<>	na	Primary Assembly	58408	na
ctg00000092.1	unplaced-scaffold	na	na	JBOJLO010000055.1	<>	na	Primary Assembly	57594	na
ctg00000093.1	unplaced-scaffold	na	na	JBOJLO010000056.1	<>	na	Primary Assembly	56605	na
ctg00000094.1	unplaced-scaffold	na	na	JBOJLO010000057.1	<>	na	Primary Assembly	56340	na
ctg00000095.1	unplaced-scaffold	na	na	JBOJLO010000058.1	<>	na	Primary Assembly	56014	na
ctg00000096.1	unplaced-scaffold	na	na	JBOJLO010000059.1	<>	na	Primary Assembly	55714	na
ctg00000098.1	unplaced-scaffold	na	na	JBOJLO010000060.1	<>	na	Primary Assembly	54939	na
ctg00000099.1	unplaced-scaffold	na	na	JBOJLO010000061.1	<>	na	Primary Assembly	54899	na
ctg00000100.1	unplaced-scaffold	na	na	JBOJLO010000062.1	<>	na	Primary Assembly	54701	na
ctg00000101.1	unplaced-scaffold	na	na	JBOJLO010000063.1	<>	na	Primary Assembly	54500	na
ctg00000102.1	unplaced-scaffold	na	na	JBOJLO010000064.1	<>	na	Primary Assembly	54469	na
ctg00000105.1	unplaced-scaffold	na	na	JBOJLO010000065.1	<>	na	Primary Assembly	53324	na
ctg00000106.1	unplaced-scaffold	na	na	JBOJLO010000066.1	<>	na	Primary Assembly	53319	na
ctg00000107.1	unplaced-scaffold	na	na	JBOJLO010000067.1	<>	na	Primary Assembly	53302	na
ctg00000108.1	unplaced-scaffold	na	na	JBOJLO010000068.1	<>	na	Primary Assembly	52745	na
ctg00000109.1	unplaced-scaffold	na	na	JBOJLO010000069.1	<>	na	Primary Assembly	52734	na
ctg00000110.1	unplaced-scaffold	na	na	JBOJLO010000070.1	<>	na	Primary Assembly	52681	na
ctg00000112.1	unplaced-scaffold	na	na	JBOJLO010000071.1	<>	na	Primary Assembly	52395	na
ctg00000113.1	unplaced-scaffold	na	na	JBOJLO010000072.1	<>	na	Primary Assembly	51804	na
ctg00000114.1	unplaced-scaffold	na	na	JBOJLO010000073.1	<>	na	Primary Assembly	51089	na
ctg00000115.1	unplaced-scaffold	na	na	JBOJLO010000074.1	<>	na	Primary Assembly	50439	na
ctg00000116.1	unplaced-scaffold	na	na	JBOJLO010000075.1	<>	na	Primary Assembly	49119	na
ctg00000117.1	unplaced-scaffold	na	na	JBOJLO010000076.1	<>	na	Primary Assembly	48639	na
ctg00000118.1	unplaced-scaffold	na	na	JBOJLO010000077.1	<>	na	Primary Assembly	48380	na
ctg00000120.1	unplaced-scaffold	na	na	JBOJLO010000078.1	<>	na	Primary Assembly	48299	na
ctg00000122.1	unplaced-scaffold	na	na	JBOJLO010000079.1	<>	na	Primary Assembly	46648	na
ctg00000124.1	unplaced-scaffold	na	na	JBOJLO010000080.1	<>	na	Primary Assembly	46201	na
ctg00000125.1	unplaced-scaffold	na	na	JBOJLO010000081.1	<>	na	Primary Assembly	45886	na
ctg00000126.1	unplaced-scaffold	na	na	JBOJLO010000082.1	<>	na	Primary Assembly	45719	na
ctg00000128.1	unplaced-scaffold	na	na	JBOJLO010000083.1	<>	na	Primary Assembly	44512	na
ctg00000129.1	unplaced-scaffold	na	na	JBOJLO010000084.1	<>	na	Primary Assembly	44416	na
ctg00000130.1	unplaced-scaffold	na	na	JBOJLO010000085.1	<>	na	Primary Assembly	44149	na
ctg00000132.1	unplaced-scaffold	na	na	JBOJLO010000086.1	<>	na	Primary Assembly	43953	na
ctg00000133.1	unplaced-scaffold	na	na	JBOJLO010000087.1	<>	na	Primary Assembly	43698	na
ctg00000134.1	unplaced-scaffold	na	na	JBOJLO010000088.1	<>	na	Primary Assembly	43686	na
ctg00000135.1	unplaced-scaffold	na	na	JBOJLO010000089.1	<>	na	Primary Assembly	43175	na
ctg00000136.1	unplaced-scaffold	na	na	JBOJLO010000090.1	<>	na	Primary Assembly	43171	na
ctg00000138.1	unplaced-scaffold	na	na	JBOJLO010000091.1	<>	na	Primary Assembly	42979	na
ctg00000141.1	unplaced-scaffold	na	na	JBOJLO010000092.1	<>	na	Primary Assembly	42012	na
ctg00000142.1	unplaced-scaffold	na	na	JBOJLO010000093.1	<>	na	Primary Assembly	41964	na
ctg00000144.1	unplaced-scaffold	na	na	JBOJLO010000094.1	<>	na	Primary Assembly	41736	na
ctg00000145.1	unplaced-scaffold	na	na	JBOJLO010000095.1	<>	na	Primary Assembly	41381	na
ctg00000146.1	unplaced-scaffold	na	na	JBOJLO010000096.1	<>	na	Primary Assembly	41380	na
ctg00000147.1	unplaced-scaffold	na	na	JBOJLO010000097.1	<>	na	Primary Assembly	41255	na
ctg00000149.1	unplaced-scaffold	na	na	JBOJLO010000098.1	<>	na	Primary Assembly	40668	na
ctg00000150.1	unplaced-scaffold	na	na	JBOJLO010000099.1	<>	na	Primary Assembly	40540	na
ctg00000151.1	unplaced-scaffold	na	na	JBOJLO010000100.1	<>	na	Primary Assembly	40436	na
ctg00000154.1	unplaced-scaffold	na	na	JBOJLO010000101.1	<>	na	Primary Assembly	40010	na
ctg00000155.1	unplaced-scaffold	na	na	JBOJLO010000102.1	<>	na	Primary Assembly	39512	na
ctg00000158.1	unplaced-scaffold	na	na	JBOJLO010000103.1	<>	na	Primary Assembly	38895	na
ctg00000159.1	unplaced-scaffold	na	na	JBOJLO010000104.1	<>	na	Primary Assembly	38856	na
ctg00000161.1	unplaced-scaffold	na	na	JBOJLO010000105.1	<>	na	Primary Assembly	37279	na
ctg00000162.1	unplaced-scaffold	na	na	JBOJLO010000106.1	<>	na	Primary Assembly	36269	na
ctg00000163.1	unplaced-scaffold	na	na	JBOJLO010000107.1	<>	na	Primary Assembly	36154	na
ctg00000166.1	unplaced-scaffold	na	na	JBOJLO010000108.1	<>	na	Primary Assembly	35133	na
ctg00000168.1	unplaced-scaffold	na	na	JBOJLO010000109.1	<>	na	Primary Assembly	34463	na
ctg00000169.1	unplaced-scaffold	na	na	JBOJLO010000110.1	<>	na	Primary Assembly	34452	na
ctg00000170.1	unplaced-scaffold	na	na	JBOJLO010000111.1	<>	na	Primary Assembly	34446	na
ctg00000171.1	unplaced-scaffold	na	na	JBOJLO010000112.1	<>	na	Primary Assembly	34091	na
ctg00000173.1	unplaced-scaffold	na	na	JBOJLO010000113.1	<>	na	Primary Assembly	33392	na
ctg00000174.1	unplaced-scaffold	na	na	JBOJLO010000114.1	<>	na	Primary Assembly	32998	na
ctg00000178.1	unplaced-scaffold	na	na	JBOJLO010000115.1	<>	na	Primary Assembly	31805	na
ctg00000180.1	unplaced-scaffold	na	na	JBOJLO010000116.1	<>	na	Primary Assembly	31678	na
ctg00000181.1	unplaced-scaffold	na	na	JBOJLO010000117.1	<>	na	Primary Assembly	31567	na
ctg00000184.1	unplaced-scaffold	na	na	JBOJLO010000118.1	<>	na	Primary Assembly	31125	na
ctg00000186.1	unplaced-scaffold	na	na	JBOJLO010000119.1	<>	na	Primary Assembly	30652	na
ctg00000189.1	unplaced-scaffold	na	na	JBOJLO010000120.1	<>	na	Primary Assembly	30472	na
ctg00000190.1	unplaced-scaffold	na	na	JBOJLO010000121.1	<>	na	Primary Assembly	30009	na
ctg00000197.1	unplaced-scaffold	na	na	JBOJLO010000122.1	<>	na	Primary Assembly	28988	na
ctg00000200.1	unplaced-scaffold	na	na	JBOJLO010000123.1	<>	na	Primary Assembly	28810	na
ctg00000202.1	unplaced-scaffold	na	na	JBOJLO010000124.1	<>	na	Primary Assembly	28503	na
ctg00000206.1	unplaced-scaffold	na	na	JBOJLO010000125.1	<>	na	Primary Assembly	28145	na
ctg00000208.1	unplaced-scaffold	na	na	JBOJLO010000126.1	<>	na	Primary Assembly	27719	na
ctg00000209.1	unplaced-scaffold	na	na	JBOJLO010000127.1	<>	na	Primary Assembly	27097	na
ctg00000210.1	unplaced-scaffold	na	na	JBOJLO010000128.1	<>	na	Primary Assembly	27031	na
ctg00000211.1	unplaced-scaffold	na	na	JBOJLO010000129.1	<>	na	Primary Assembly	26992	na
ctg00000213.1	unplaced-scaffold	na	na	JBOJLO010000130.1	<>	na	Primary Assembly	26833	na
ctg00000217.1	unplaced-scaffold	na	na	JBOJLO010000131.1	<>	na	Primary Assembly	26107	na
ctg00000218.1	unplaced-scaffold	na	na	JBOJLO010000132.1	<>	na	Primary Assembly	25756	na
ctg00000224.1	unplaced-scaffold	na	na	JBOJLO010000133.1	<>	na	Primary Assembly	25391	na
ctg00000232.1	unplaced-scaffold	na	na	JBOJLO010000134.1	<>	na	Primary Assembly	24230	na
ctg00000233.1	unplaced-scaffold	na	na	JBOJLO010000135.1	<>	na	Primary Assembly	24154	na
ctg00000234.1	unplaced-scaffold	na	na	JBOJLO010000136.1	<>	na	Primary Assembly	23490	na
ctg00000236.1	unplaced-scaffold	na	na	JBOJLO010000137.1	<>	na	Primary Assembly	23421	na
ctg00000237.1	unplaced-scaffold	na	na	JBOJLO010000138.1	<>	na	Primary Assembly	23303	na
ctg00000238.1	unplaced-scaffold	na	na	JBOJLO010000139.1	<>	na	Primary Assembly	23190	na
ctg00000242.1	unplaced-scaffold	na	na	JBOJLO010000140.1	<>	na	Primary Assembly	22851	na
ctg00000244.1	unplaced-scaffold	na	na	JBOJLO010000141.1	<>	na	Primary Assembly	22831	na
ctg00000245.1	unplaced-scaffold	na	na	JBOJLO010000142.1	<>	na	Primary Assembly	22666	na
ctg00000246.1	unplaced-scaffold	na	na	JBOJLO010000143.1	<>	na	Primary Assembly	22261	na
ctg00000247.1	unplaced-scaffold	na	na	JBOJLO010000144.1	<>	na	Primary Assembly	21644	na
ctg00000249.1	unplaced-scaffold	na	na	JBOJLO010000145.1	<>	na	Primary Assembly	21490	na
ctg00000253.1	unplaced-scaffold	na	na	JBOJLO010000146.1	<>	na	Primary Assembly	20393	na
ctg00000256.1	unplaced-scaffold	na	na	JBOJLO010000147.1	<>	na	Primary Assembly	19726	na
ctg00000257.1	unplaced-scaffold	na	na	JBOJLO010000148.1	<>	na	Primary Assembly	19629	na
ctg00000259.1	unplaced-scaffold	na	na	JBOJLO010000149.1	<>	na	Primary Assembly	18846	na
ctg00000260.1	unplaced-scaffold	na	na	JBOJLO010000150.1	<>	na	Primary Assembly	18792	na
ctg00000263.1	unplaced-scaffold	na	na	JBOJLO010000151.1	<>	na	Primary Assembly	17611	na
ctg00000266.1	unplaced-scaffold	na	na	JBOJLO010000152.1	<>	na	Primary Assembly	17172	na
ctg00000267.1	unplaced-scaffold	na	na	JBOJLO010000153.1	<>	na	Primary Assembly	16140	na
ctg00000268.1	unplaced-scaffold	na	na	JBOJLO010000154.1	<>	na	Primary Assembly	15909	na
ctg00000269.1	unplaced-scaffold	na	na	JBOJLO010000155.1	<>	na	Primary Assembly	14678	na
ctg00000270.1	unplaced-scaffold	na	na	JBOJLO010000156.1	<>	na	Primary Assembly	13381	na
ctg00000271.1	unplaced-scaffold	na	na	JBOJLO010000157.1	<>	na	Primary Assembly	12431	na
Mitogenome	assembled-molecule	MT	Mitochondrion	CM127288.1	<>	na	non-nuclear	16055	na