# Assembly name: bNetRuf1.1 # Organism name: Netta rufina (red-crested pochard) # Taxid: 30387 # BioSample: SAMEA112468124 # BioProject: PRJEB75341 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-04-29 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXIUX01 # Assembly method: various # Genome coverage: 30x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_964035555.1 # Linked assembly: GCA_964035535.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964035554.1 Primary Assembly ## GCA_964035556.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ037790.1 <> na Primary Assembly 206794109 na SUPER_2 assembled-molecule 2 Chromosome OZ037791.1 <> na Primary Assembly 159107360 na SUPER_3 assembled-molecule 3 Chromosome OZ037792.1 <> na Primary Assembly 121819845 na SUPER_4 assembled-molecule 4 Chromosome OZ037794.1 <> na Primary Assembly 77261329 na SUPER_5 assembled-molecule 5 Chromosome OZ037795.1 <> na Primary Assembly 65509343 na SUPER_6 assembled-molecule 6 Chromosome OZ037796.1 <> na Primary Assembly 40490615 na SUPER_7 assembled-molecule 7 Chromosome OZ037797.1 <> na Primary Assembly 37833738 na SUPER_8 assembled-molecule 8 Chromosome OZ037798.1 <> na Primary Assembly 33152446 na SUPER_9 assembled-molecule 9 Chromosome OZ037799.1 <> na Primary Assembly 27023799 na SUPER_10 assembled-molecule 10 Chromosome OZ037800.1 <> na Primary Assembly 23241377 na SUPER_11 assembled-molecule 11 Chromosome OZ037801.1 <> na Primary Assembly 22859295 na SUPER_12 assembled-molecule 12 Chromosome OZ037802.1 <> na Primary Assembly 21969010 na SUPER_13 assembled-molecule 13 Chromosome OZ037803.1 <> na Primary Assembly 21707865 na SUPER_14 assembled-molecule 14 Chromosome OZ037804.1 <> na Primary Assembly 20796253 na SUPER_15 assembled-molecule 15 Chromosome OZ037805.1 <> na Primary Assembly 18365175 na SUPER_16 assembled-molecule 16 Chromosome OZ037807.1 <> na Primary Assembly 16878243 na SUPER_17 assembled-molecule 17 Chromosome OZ037808.1 <> na Primary Assembly 15971978 na SUPER_18 assembled-molecule 18 Chromosome OZ037809.1 <> na Primary Assembly 14181263 na SUPER_19 assembled-molecule 19 Chromosome OZ037810.1 <> na Primary Assembly 13147949 na SUPER_20 assembled-molecule 20 Chromosome OZ037811.1 <> na Primary Assembly 12738751 na SUPER_21 assembled-molecule 21 Chromosome OZ037812.1 <> na Primary Assembly 12349202 na SUPER_22 assembled-molecule 22 Chromosome OZ037813.1 <> na Primary Assembly 9403005 na SUPER_23 assembled-molecule 23 Chromosome OZ037814.1 <> na Primary Assembly 8590254 na SUPER_24 assembled-molecule 24 Chromosome OZ037815.1 <> na Primary Assembly 8068039 na SUPER_25 assembled-molecule 25 Chromosome OZ037816.1 <> na Primary Assembly 7901938 na SUPER_26 assembled-molecule 26 Chromosome OZ037817.1 <> na Primary Assembly 7570058 na SUPER_27 assembled-molecule 27 Chromosome OZ037818.1 <> na Primary Assembly 6317600 na SUPER_28 assembled-molecule 28 Chromosome OZ037819.1 <> na Primary Assembly 6009740 na SUPER_29 assembled-molecule 29 Chromosome OZ037820.1 <> na Primary Assembly 3773657 na SUPER_30 assembled-molecule 30 Chromosome OZ037821.1 <> na Primary Assembly 3141441 na SUPER_31 assembled-molecule 31 Chromosome OZ037822.1 <> na Primary Assembly 2867562 na SUPER_32 assembled-molecule 32 Chromosome OZ037823.1 <> na Primary Assembly 1949878 na SUPER_33 assembled-molecule 33 Chromosome OZ037824.1 <> na Primary Assembly 1938080 na SUPER_34 assembled-molecule 34 Chromosome OZ037825.1 <> na Primary Assembly 1877549 na SUPER_35 assembled-molecule 35 Chromosome OZ037826.1 <> na Primary Assembly 691301 na SUPER_36 assembled-molecule 36 Chromosome OZ037827.1 <> na Primary Assembly 478856 na SUPER_37 assembled-molecule 37 Chromosome OZ037828.1 <> na Primary Assembly 548848 na SUPER_38 assembled-molecule 38 Chromosome OZ037829.1 <> na Primary Assembly 274719 na SUPER_39 assembled-molecule 39 Chromosome OZ037830.1 <> na Primary Assembly 156107 na SUPER_40 assembled-molecule 40 Chromosome OZ037831.1 <> na Primary Assembly 110427 na SUPER_W assembled-molecule W Chromosome OZ037806.1 <> na Primary Assembly 17954532 na SUPER_Z assembled-molecule Z Chromosome OZ037793.1 <> na Primary Assembly 79609170 na SUPER_36_unloc_1 unlocalized-scaffold 36 Chromosome CAXIUX010000001.1 <> na Primary Assembly 76524 na SUPER_38_unloc_1 unlocalized-scaffold 38 Chromosome CAXIUX010000002.1 <> na Primary Assembly 59247 na SCAFFOLD_125 unplaced-scaffold na na CAXIUX010000003.1 <> na Primary Assembly 57000 na SCAFFOLD_52 unplaced-scaffold na na CAXIUX010000004.1 <> na Primary Assembly 860000 na SCAFFOLD_156 unplaced-scaffold na na CAXIUX010000005.1 <> na Primary Assembly 32792 na SCAFFOLD_108 unplaced-scaffold na na CAXIUX010000006.1 <> na Primary Assembly 85000 na SCAFFOLD_41 unplaced-scaffold na na CAXIUX010000007.1 <> na Primary Assembly 1137007 na SCAFFOLD_174 unplaced-scaffold na na CAXIUX010000008.1 <> na Primary Assembly 25352 na SCAFFOLD_118 unplaced-scaffold na na CAXIUX010000009.1 <> na Primary Assembly 66000 na SCAFFOLD_132 unplaced-scaffold na na CAXIUX010000010.1 <> na Primary Assembly 51269 na SCAFFOLD_103 unplaced-scaffold na na CAXIUX010000011.1 <> na Primary Assembly 98000 na SCAFFOLD_195 unplaced-scaffold na na CAXIUX010000012.1 <> na Primary Assembly 15559 na SCAFFOLD_159 unplaced-scaffold na na CAXIUX010000013.1 <> na Primary Assembly 31337 na SCAFFOLD_194 unplaced-scaffold na na CAXIUX010000014.1 <> na Primary Assembly 15866 na SCAFFOLD_175 unplaced-scaffold na na CAXIUX010000015.1 <> na Primary Assembly 24489 na SCAFFOLD_152 unplaced-scaffold na na CAXIUX010000016.1 <> na Primary Assembly 33956 na SCAFFOLD_136 unplaced-scaffold na na CAXIUX010000017.1 <> na Primary Assembly 49000 na SCAFFOLD_72 unplaced-scaffold na na CAXIUX010000018.1 <> na Primary Assembly 350387 na SCAFFOLD_124 unplaced-scaffold na na CAXIUX010000019.1 <> na Primary Assembly 58264 na SCAFFOLD_182 unplaced-scaffold na na CAXIUX010000020.1 <> na Primary Assembly 21834 na SCAFFOLD_104 unplaced-scaffold na na CAXIUX010000021.1 <> na Primary Assembly 94998 na SCAFFOLD_190 unplaced-scaffold na na CAXIUX010000022.1 <> na Primary Assembly 16562 na SCAFFOLD_173 unplaced-scaffold na na CAXIUX010000023.1 <> na Primary Assembly 25863 na SCAFFOLD_146 unplaced-scaffold na na CAXIUX010000024.1 <> na Primary Assembly 38485 na SCAFFOLD_189 unplaced-scaffold na na CAXIUX010000025.1 <> na Primary Assembly 17152 na SCAFFOLD_206 unplaced-scaffold na na CAXIUX010000026.1 <> na Primary Assembly 1000 na SCAFFOLD_171 unplaced-scaffold na na CAXIUX010000027.1 <> na Primary Assembly 26915 na SCAFFOLD_82 unplaced-scaffold na na CAXIUX010000028.1 <> na Primary Assembly 237000 na SCAFFOLD_114 unplaced-scaffold na na CAXIUX010000029.1 <> na Primary Assembly 76000 na SCAFFOLD_177 unplaced-scaffold na na CAXIUX010000030.1 <> na Primary Assembly 23032 na SCAFFOLD_71 unplaced-scaffold na na CAXIUX010000031.1 <> na Primary Assembly 383018 na SCAFFOLD_178 unplaced-scaffold na na CAXIUX010000032.1 <> na Primary Assembly 22800 na SCAFFOLD_166 unplaced-scaffold na na CAXIUX010000033.1 <> na Primary Assembly 28464 na SCAFFOLD_197 unplaced-scaffold na na CAXIUX010000034.1 <> na Primary Assembly 15318 na SCAFFOLD_202 unplaced-scaffold na na CAXIUX010000035.1 <> na Primary Assembly 8000 na SCAFFOLD_142 unplaced-scaffold na na CAXIUX010000036.1 <> na Primary Assembly 42452 na SCAFFOLD_42 unplaced-scaffold na na CAXIUX010000037.1 <> na Primary Assembly 1133675 na SCAFFOLD_186 unplaced-scaffold na na CAXIUX010000038.1 <> na Primary Assembly 19311 na SCAFFOLD_198 unplaced-scaffold na na CAXIUX010000039.1 <> na Primary Assembly 15264 na SCAFFOLD_149 unplaced-scaffold na na CAXIUX010000040.1 <> na Primary Assembly 35903 na SCAFFOLD_61 unplaced-scaffold na na CAXIUX010000041.1 <> na Primary Assembly 741000 na SCAFFOLD_162 unplaced-scaffold na na CAXIUX010000042.1 <> na Primary Assembly 30956 na SCAFFOLD_170 unplaced-scaffold na na CAXIUX010000043.1 <> na Primary Assembly 27615 na SCAFFOLD_49 unplaced-scaffold na na CAXIUX010000044.1 <> na Primary Assembly 956000 na SCAFFOLD_87 unplaced-scaffold na na CAXIUX010000045.1 <> na Primary Assembly 139000 na SCAFFOLD_50 unplaced-scaffold na na CAXIUX010000046.1 <> na Primary Assembly 922320 na SCAFFOLD_193 unplaced-scaffold na na CAXIUX010000047.1 <> na Primary Assembly 15922 na SCAFFOLD_122 unplaced-scaffold na na CAXIUX010000048.1 <> na Primary Assembly 59122 na SCAFFOLD_168 unplaced-scaffold na na CAXIUX010000049.1 <> na Primary Assembly 27840 na SCAFFOLD_203 unplaced-scaffold na na CAXIUX010000050.1 <> na Primary Assembly 6000 na SCAFFOLD_143 unplaced-scaffold na na CAXIUX010000051.1 <> na Primary Assembly 39955 na SCAFFOLD_176 unplaced-scaffold na na CAXIUX010000052.1 <> na Primary Assembly 24041 na SCAFFOLD_161 unplaced-scaffold na na CAXIUX010000053.1 <> na Primary Assembly 31130 na SCAFFOLD_167 unplaced-scaffold na na CAXIUX010000054.1 <> na Primary Assembly 28036 na SCAFFOLD_208 unplaced-scaffold na na CAXIUX010000055.1 <> na Primary Assembly 1000 na SCAFFOLD_163 unplaced-scaffold na na CAXIUX010000056.1 <> na Primary Assembly 30305 na SCAFFOLD_75 unplaced-scaffold na na CAXIUX010000057.1 <> na Primary Assembly 293533 na SCAFFOLD_46 unplaced-scaffold na na CAXIUX010000058.1 <> na Primary Assembly 1027000 na SCAFFOLD_154 unplaced-scaffold na na CAXIUX010000059.1 <> na Primary Assembly 33353 na SCAFFOLD_199 unplaced-scaffold na na CAXIUX010000060.1 <> na Primary Assembly 12996 na SCAFFOLD_147 unplaced-scaffold na na CAXIUX010000061.1 <> na Primary Assembly 37661 na SCAFFOLD_201 unplaced-scaffold na na CAXIUX010000062.1 <> na Primary Assembly 11027 na SCAFFOLD_141 unplaced-scaffold na na CAXIUX010000063.1 <> na Primary Assembly 43066 na SCAFFOLD_207 unplaced-scaffold na na CAXIUX010000064.1 <> na Primary Assembly 1000 na SCAFFOLD_192 unplaced-scaffold na na CAXIUX010000065.1 <> na Primary Assembly 16015 na SCAFFOLD_53 unplaced-scaffold na na CAXIUX010000066.1 <> na Primary Assembly 859000 na SCAFFOLD_180 unplaced-scaffold na na CAXIUX010000067.1 <> na Primary Assembly 22507 na SCAFFOLD_179 unplaced-scaffold na na CAXIUX010000068.1 <> na Primary Assembly 22782 na SCAFFOLD_86 unplaced-scaffold na na CAXIUX010000069.1 <> na Primary Assembly 161000 na SCAFFOLD_73 unplaced-scaffold na na CAXIUX010000070.1 <> na Primary Assembly 330000 na SCAFFOLD_183 unplaced-scaffold na na CAXIUX010000071.1 <> na Primary Assembly 21573 na SCAFFOLD_172 unplaced-scaffold na na CAXIUX010000072.1 <> na Primary Assembly 26105 na SCAFFOLD_160 unplaced-scaffold na na CAXIUX010000073.1 <> na Primary Assembly 31256 na SCAFFOLD_55 unplaced-scaffold na na CAXIUX010000074.1 <> na Primary Assembly 827000 na SCAFFOLD_196 unplaced-scaffold na na CAXIUX010000075.1 <> na Primary Assembly 15337 na SCAFFOLD_94 unplaced-scaffold na na CAXIUX010000076.1 <> na Primary Assembly 122000 na SCAFFOLD_188 unplaced-scaffold na na CAXIUX010000077.1 <> na Primary Assembly 17443 na SCAFFOLD_200 unplaced-scaffold na na CAXIUX010000078.1 <> na Primary Assembly 12040 na SCAFFOLD_187 unplaced-scaffold na na CAXIUX010000079.1 <> na Primary Assembly 17627 na SCAFFOLD_181 unplaced-scaffold na na CAXIUX010000080.1 <> na Primary Assembly 22442 na SCAFFOLD_68 unplaced-scaffold na na CAXIUX010000081.1 <> na Primary Assembly 434604 na SCAFFOLD_130 unplaced-scaffold na na CAXIUX010000082.1 <> na Primary Assembly 53510 na SCAFFOLD_185 unplaced-scaffold na na CAXIUX010000083.1 <> na Primary Assembly 21112 na SCAFFOLD_153 unplaced-scaffold na na CAXIUX010000084.1 <> na Primary Assembly 33367 na SCAFFOLD_164 unplaced-scaffold na na CAXIUX010000085.1 <> na Primary Assembly 29362 na SCAFFOLD_151 unplaced-scaffold na na CAXIUX010000086.1 <> na Primary Assembly 35273 na SCAFFOLD_157 unplaced-scaffold na na CAXIUX010000087.1 <> na Primary Assembly 32503 na SCAFFOLD_158 unplaced-scaffold na na CAXIUX010000088.1 <> na Primary Assembly 32001 na SCAFFOLD_204 unplaced-scaffold na na CAXIUX010000089.1 <> na Primary Assembly 3000 na SCAFFOLD_119 unplaced-scaffold na na CAXIUX010000090.1 <> na Primary Assembly 65931 na SCAFFOLD_205 unplaced-scaffold na na CAXIUX010000091.1 <> na Primary Assembly 1000 na SCAFFOLD_138 unplaced-scaffold na na CAXIUX010000092.1 <> na Primary Assembly 46551 na SCAFFOLD_165 unplaced-scaffold na na CAXIUX010000093.1 <> na Primary Assembly 28921 na SCAFFOLD_109 unplaced-scaffold na na CAXIUX010000094.1 <> na Primary Assembly 84000 na SCAFFOLD_150 unplaced-scaffold na na CAXIUX010000095.1 <> na Primary Assembly 35869 na SCAFFOLD_56 unplaced-scaffold na na CAXIUX010000096.1 <> na Primary Assembly 817965 na SCAFFOLD_78 unplaced-scaffold na na CAXIUX010000097.1 <> na Primary Assembly 279972 na SCAFFOLD_184 unplaced-scaffold na na CAXIUX010000098.1 <> na Primary Assembly 21250 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ037832.1 <> na non-nuclear 16625 na