# Assembly name: aLisHel1.1 # Organism name: Lissotriton helveticus (palmate newt) # Taxid: 256425 # BioSample: SAMEA110240860 # BioProject: PRJEB79500 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-10-17 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXVQV01 # Assembly method: various # Genome coverage: 27x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_964261635.1 # Linked assembly: GCA_964258895.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964261634.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1_1 assembled-molecule 1_1 Chromosome OZ180042.1 <> na Primary Assembly 2146314909 na SUPER_1_2 assembled-molecule 1_2 Chromosome OZ180043.1 <> na Primary Assembly 459926735 na SUPER_2_1 assembled-molecule 2_1 Chromosome OZ180044.1 <> na Primary Assembly 2140055507 na SUPER_2_2 assembled-molecule 2_2 Chromosome OZ180045.1 <> na Primary Assembly 526359502 na SUPER_3_1 assembled-molecule 3_1 Chromosome OZ180046.1 <> na Primary Assembly 2132484007 na SUPER_3_2 assembled-molecule 3_2 Chromosome OZ180047.1 <> na Primary Assembly 510744347 na SUPER_4_1 assembled-molecule 4_1 Chromosome OZ180048.1 <> na Primary Assembly 2141402031 na SUPER_4_2 assembled-molecule 4_2 Chromosome OZ180049.1 <> na Primary Assembly 154081089 na SUPER_5_1 assembled-molecule 5_1 Chromosome OZ180050.1 <> na Primary Assembly 2143815925 na SUPER_5_2 assembled-molecule 5_2 Chromosome OZ180051.1 <> na Primary Assembly 17068361 na SUPER_6 assembled-molecule 6 Chromosome OZ180052.1 <> na Primary Assembly 2139332349 na SUPER_7 assembled-molecule 7 Chromosome OZ180053.1 <> na Primary Assembly 1965638399 na SUPER_8 assembled-molecule 8 Chromosome OZ180054.1 <> na Primary Assembly 1730884321 na SUPER_9 assembled-molecule 9 Chromosome OZ180055.1 <> na Primary Assembly 1292683186 na SUPER_10 assembled-molecule 10 Chromosome OZ180056.1 <> na Primary Assembly 1220333517 na SUPER_11 assembled-molecule 11 Chromosome OZ180057.1 <> na Primary Assembly 1209226565 na SUPER_12 assembled-molecule 12 Chromosome OZ180058.1 <> na Primary Assembly 921867516 na SUPER_1_unloc_1 unlocalized-scaffold 1_1 Chromosome CAXVQV010000001.1 <> na Primary Assembly 7799006 na SUPER_1_unloc_2 unlocalized-scaffold 1_1 Chromosome CAXVQV010000002.1 <> na Primary Assembly 6103965 na SUPER_1_unloc_3 unlocalized-scaffold 1_1 Chromosome CAXVQV010000003.1 <> na Primary Assembly 6019561 na SUPER_1_unloc_4 unlocalized-scaffold 1_1 Chromosome CAXVQV010000004.1 <> na Primary Assembly 5757000 na SUPER_1_unloc_5 unlocalized-scaffold 1_1 Chromosome CAXVQV010000005.1 <> na Primary Assembly 5351306 na SUPER_1_unloc_6 unlocalized-scaffold 1_1 Chromosome CAXVQV010000006.1 <> na Primary Assembly 5334200 na SUPER_1_unloc_7 unlocalized-scaffold 1_1 Chromosome CAXVQV010000007.1 <> na Primary Assembly 5253027 na SUPER_1_unloc_8 unlocalized-scaffold 1_1 Chromosome CAXVQV010000008.1 <> na Primary Assembly 5156200 na SUPER_1_unloc_9 unlocalized-scaffold 1_1 Chromosome CAXVQV010000009.1 <> na Primary Assembly 5151726 na SUPER_1_unloc_10 unlocalized-scaffold 1_1 Chromosome CAXVQV010000010.1 <> na Primary Assembly 5135350 na SUPER_1_unloc_11 unlocalized-scaffold 1_1 Chromosome CAXVQV010000011.1 <> na Primary Assembly 5014589 na SUPER_1_unloc_12 unlocalized-scaffold 1_1 Chromosome CAXVQV010000012.1 <> na Primary Assembly 5000200 na SUPER_1_unloc_13 unlocalized-scaffold 1_1 Chromosome CAXVQV010000013.1 <> na Primary Assembly 4690224 na SUPER_1_unloc_14 unlocalized-scaffold 1_1 Chromosome CAXVQV010000014.1 <> na Primary Assembly 4353000 na SUPER_1_unloc_15 unlocalized-scaffold 1_1 Chromosome CAXVQV010000015.1 <> na Primary Assembly 4300000 na SUPER_1_unloc_16 unlocalized-scaffold 1_1 Chromosome CAXVQV010000016.1 <> na Primary Assembly 4283017 na SUPER_1_unloc_17 unlocalized-scaffold 1_1 Chromosome CAXVQV010000017.1 <> na Primary Assembly 4217319 na SUPER_1_unloc_18 unlocalized-scaffold 1_1 Chromosome CAXVQV010000018.1 <> na Primary Assembly 4041256 na SUPER_1_unloc_19 unlocalized-scaffold 1_1 Chromosome CAXVQV010000019.1 <> na Primary Assembly 3893000 na SUPER_1_unloc_20 unlocalized-scaffold 1_1 Chromosome CAXVQV010000020.1 <> na Primary Assembly 3691000 na SUPER_1_unloc_21 unlocalized-scaffold 1_1 Chromosome CAXVQV010000021.1 <> na Primary Assembly 3509788 na SUPER_1_unloc_22 unlocalized-scaffold 1_1 Chromosome CAXVQV010000022.1 <> na Primary Assembly 3191562 na SUPER_1_unloc_23 unlocalized-scaffold 1_1 Chromosome CAXVQV010000023.1 <> na Primary Assembly 3131000 na SUPER_1_unloc_24 unlocalized-scaffold 1_1 Chromosome CAXVQV010000024.1 <> na Primary Assembly 3020000 na SUPER_1_unloc_25 unlocalized-scaffold 1_1 Chromosome CAXVQV010000025.1 <> na Primary Assembly 2928000 na SUPER_1_unloc_26 unlocalized-scaffold 1_1 Chromosome CAXVQV010000026.1 <> na Primary Assembly 2815000 na SUPER_1_unloc_27 unlocalized-scaffold 1_1 Chromosome CAXVQV010000027.1 <> na Primary Assembly 2705392 na SUPER_1_unloc_28 unlocalized-scaffold 1_1 Chromosome CAXVQV010000028.1 <> na Primary Assembly 2571338 na SUPER_1_unloc_29 unlocalized-scaffold 1_1 Chromosome CAXVQV010000029.1 <> na Primary Assembly 2523630 na SUPER_1_unloc_30 unlocalized-scaffold 1_1 Chromosome CAXVQV010000030.1 <> na Primary Assembly 2521000 na SUPER_1_unloc_31 unlocalized-scaffold 1_1 Chromosome CAXVQV010000031.1 <> na Primary Assembly 2514986 na SUPER_1_unloc_32 unlocalized-scaffold 1_1 Chromosome CAXVQV010000032.1 <> na Primary Assembly 2497048 na SUPER_1_unloc_33 unlocalized-scaffold 1_1 Chromosome CAXVQV010000033.1 <> na Primary Assembly 2475704 na SUPER_1_unloc_34 unlocalized-scaffold 1_1 Chromosome CAXVQV010000034.1 <> na Primary Assembly 2456498 na SUPER_1_unloc_35 unlocalized-scaffold 1_1 Chromosome CAXVQV010000035.1 <> na Primary Assembly 2381349 na SUPER_1_unloc_36 unlocalized-scaffold 1_1 Chromosome CAXVQV010000036.1 <> na Primary Assembly 2244940 na SUPER_1_unloc_37 unlocalized-scaffold 1_1 Chromosome CAXVQV010000037.1 <> na Primary Assembly 2166000 na SUPER_1_unloc_38 unlocalized-scaffold 1_1 Chromosome CAXVQV010000038.1 <> na Primary Assembly 2106131 na SUPER_1_unloc_39 unlocalized-scaffold 1_1 Chromosome CAXVQV010000039.1 <> na Primary Assembly 2065360 na SUPER_1_unloc_40 unlocalized-scaffold 1_1 Chromosome CAXVQV010000040.1 <> na Primary Assembly 2020090 na SUPER_1_unloc_41 unlocalized-scaffold 1_1 Chromosome CAXVQV010000041.1 <> na Primary Assembly 1984906 na SUPER_1_unloc_42 unlocalized-scaffold 1_1 Chromosome CAXVQV010000042.1 <> na Primary Assembly 1979565 na SUPER_1_unloc_43 unlocalized-scaffold 1_1 Chromosome CAXVQV010000043.1 <> na Primary Assembly 1923000 na SUPER_1_unloc_44 unlocalized-scaffold 1_1 Chromosome CAXVQV010000044.1 <> na Primary Assembly 1897601 na SUPER_1_unloc_45 unlocalized-scaffold 1_1 Chromosome CAXVQV010000045.1 <> na Primary Assembly 1889461 na SUPER_1_unloc_46 unlocalized-scaffold 1_1 Chromosome CAXVQV010000046.1 <> na Primary Assembly 1888387 na SUPER_1_unloc_47 unlocalized-scaffold 1_1 Chromosome CAXVQV010000047.1 <> na Primary Assembly 1867200 na SUPER_1_unloc_48 unlocalized-scaffold 1_1 Chromosome CAXVQV010000048.1 <> na Primary Assembly 1790339 na SUPER_1_unloc_49 unlocalized-scaffold 1_1 Chromosome CAXVQV010000049.1 <> na Primary Assembly 1787005 na SUPER_1_unloc_50 unlocalized-scaffold 1_1 Chromosome CAXVQV010000050.1 <> na Primary Assembly 1779570 na SUPER_1_unloc_51 unlocalized-scaffold 1_1 Chromosome CAXVQV010000051.1 <> na Primary Assembly 1701000 na SUPER_1_unloc_52 unlocalized-scaffold 1_1 Chromosome CAXVQV010000052.1 <> na Primary Assembly 1686000 na SUPER_1_unloc_53 unlocalized-scaffold 1_1 Chromosome CAXVQV010000053.1 <> na Primary Assembly 1673682 na SUPER_1_unloc_54 unlocalized-scaffold 1_1 Chromosome CAXVQV010000054.1 <> na Primary Assembly 1672058 na SUPER_1_unloc_55 unlocalized-scaffold 1_1 Chromosome CAXVQV010000055.1 <> na Primary Assembly 1664000 na SUPER_1_unloc_56 unlocalized-scaffold 1_1 Chromosome CAXVQV010000056.1 <> na Primary Assembly 1639000 na SUPER_1_unloc_57 unlocalized-scaffold 1_1 Chromosome CAXVQV010000057.1 <> na Primary Assembly 1515887 na SUPER_1_unloc_58 unlocalized-scaffold 1_1 Chromosome CAXVQV010000058.1 <> na Primary Assembly 1510218 na SUPER_1_unloc_59 unlocalized-scaffold 1_1 Chromosome CAXVQV010000059.1 <> na Primary Assembly 1438000 na SUPER_1_unloc_60 unlocalized-scaffold 1_1 Chromosome CAXVQV010000060.1 <> na Primary Assembly 1436000 na SUPER_1_unloc_61 unlocalized-scaffold 1_1 Chromosome CAXVQV010000061.1 <> na Primary Assembly 1394915 na SUPER_1_unloc_62 unlocalized-scaffold 1_1 Chromosome CAXVQV010000062.1 <> na Primary Assembly 1369000 na SUPER_1_unloc_63 unlocalized-scaffold 1_1 Chromosome CAXVQV010000063.1 <> na Primary Assembly 1347721 na SUPER_1_unloc_64 unlocalized-scaffold 1_1 Chromosome CAXVQV010000064.1 <> na Primary Assembly 1303000 na SUPER_1_unloc_65 unlocalized-scaffold 1_1 Chromosome CAXVQV010000065.1 <> na Primary Assembly 1296098 na SUPER_1_unloc_66 unlocalized-scaffold 1_1 Chromosome CAXVQV010000066.1 <> na Primary Assembly 1259000 na SUPER_1_unloc_67 unlocalized-scaffold 1_1 Chromosome CAXVQV010000067.1 <> na Primary Assembly 1213000 na SUPER_1_unloc_68 unlocalized-scaffold 1_1 Chromosome CAXVQV010000068.1 <> na Primary Assembly 1198000 na SUPER_1_unloc_69 unlocalized-scaffold 1_1 Chromosome CAXVQV010000069.1 <> na Primary Assembly 1145000 na SUPER_1_unloc_70 unlocalized-scaffold 1_1 Chromosome CAXVQV010000070.1 <> na Primary Assembly 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