track EST_Alignments
bigDataUrl contrib/VEuPathDB/bbi/EST_Alignments.bb
html contrib/VEuPathDB/html/blat_ests.html
longLabel Transcriptomics__BLAT_and_Blast_Alignments__EST_Alignments.gff3.bed.bb
maxWindowToDraw 200000
shortLabel EST Alignments
type bigBed 9
visibility dense

track Long_ncRNA
bigDataUrl contrib/VEuPathDB/bbi/Long_ncRNA.bb
html contrib/VEuPathDB/html/noncoding_rna.html
longLabel Gene_Models__Transcripts__Long_non-coding_RNA_for_P._falciparum.gff3.bed.bb
shortLabel Long ncRNA
type bigBed 9
visibility pack

track Curated_transcript
bigDataUrl contrib/VEuPathDB/bbi/Curated_transcript.bb
html contrib/VEuPathDB/html/annotated_transcripts.html
longLabel Gene_Models__Transcripts__Annotated_Transcripts.gff3.bed.bb
shortLabel Curated transcript
type bigBed 12
visibility pack

track Long_Read_RNA
bigDataUrl contrib/VEuPathDB/bbi/Long_Read_RNA.bb
html contrib/VEuPathDB/html/Long_Read_RNA.html
longLabel Gene_Models__Transcripts__Long_Read_RNA_for_P._falciparum.gff3.bed.bb
shortLabel Long Read RNA
type bigBed 9
visibility squish

track Annotated_Introns
bigDataUrl contrib/VEuPathDB/bbi/Annotated_Introns.bb
html contrib/VEuPathDB/html/annotated_introns.html
labelFields none
longLabel Annotated introns that are confirmed by RNASeq reads
mouseOverField readCount
shortLabel Annotated Introns
type bigBed 9+1
visibility pack

track Unannotated_Introns
bigDataUrl contrib/VEuPathDB/bbi/Unannotated_Introns.bb
html contrib/VEuPathDB/html/unannotated_introns.html
labelFields none
longLabel Unannotated introns that are suggested by RNASeq reads
mouseOverField readCount
shortLabel Unannotated Introns
type bigBed 9+1
visibility pack

track Combined_RNA-Seq
aggregate transparentOverlay
container multiWig
html contrib/VEuPathDB/html/Combined_RNA-Seq.html
longLabel Combined RNA-Seq data mirrored from plasmodb.org
shortLabel Combined RNA-Seq
showSubtrackColorOnUi on
type bigWig 0 756

track Bartfai_IDC_2018_plus
bigDataUrl contrib/VEuPathDB/bbi/Bartfai_IDC_2018_plus.bw
color 130,100,130
longLabel Bartfai_IDC_2018_firststrand_merged
parent Combined_RNA-Seq
shortLabel Bartfai_IDC_2018_plus
type bigWig 0 121

track Bartfai_IDC_2018_minus
bigDataUrl contrib/VEuPathDB/bbi/Bartfai_IDC_2018_minus.bw
color 120,100,120
longLabel Bartfai_IDC_2018_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Bartfai_IDC_2018_minus
type bigWig 0 116

track Bunnik_Asexual_Cell_Cycle_nostrand
bigDataUrl contrib/VEuPathDB/bbi/Bunnik_Asexual_Cell_Cycle_nostrand.bw
color 110,100,110
longLabel Bunnik_Asexual_Cell_Cycle_unstranded_merged
parent Combined_RNA-Seq
shortLabel Bunnik_Asexual_Cell_Cycle_nostrand
type bigWig 0 90

track Caro_ribosome_profiling_plus
bigDataUrl contrib/VEuPathDB/bbi/Caro_ribosome_profiling_plus.bw
color 100,150,150
longLabel Caro_ribosome_profiling_firststrand_merged
parent Combined_RNA-Seq
shortLabel Caro_ribosome_profiling_plus
type bigWig 1 184

track Caro_ribosome_profiling_minus
bigDataUrl contrib/VEuPathDB/bbi/Caro_ribosome_profiling_minus.bw
color 100,140,140
longLabel Caro_ribosome_profiling_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Caro_ribosome_profiling_minus
type bigWig 4 164

track Chappell_IDC_DAFT_UTRSeq_plus
bigDataUrl contrib/VEuPathDB/bbi/Chappell_IDC_DAFT_UTRSeq_plus.bw
color 100,130,130
longLabel Chappell_IDC_DAFT_UTRSeq_firststrand_merged
parent Combined_RNA-Seq
shortLabel Chappell_IDC_DAFT_UTRSeq_plus
type bigWig 0 267

track Chappell_IDC_DAFT_UTRSeq_minus
bigDataUrl contrib/VEuPathDB/bbi/Chappell_IDC_DAFT_UTRSeq_minus.bw
color 100,120,120
longLabel Chappell_IDC_DAFT_UTRSeq_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Chappell_IDC_DAFT_UTRSeq_minus
type bigWig 0 261

track Cultured_Sporozoites_nostrand
bigDataUrl contrib/VEuPathDB/bbi/Cultured_Sporozoites_nostrand.bw
color 100,110,110
longLabel Cultured_Sporozoites_Transcriptome_unstranded_merged
parent Combined_RNA-Seq
shortLabel Cultured_Sporozoites_nostrand
type bigWig 0 50

track Duffy_Ring-Schiz-Tropho_plus
bigDataUrl contrib/VEuPathDB/bbi/Duffy_Ring-Schiz-Tropho_plus.bw
color 100,100,100
longLabel Duffy_Ring-Schiz-Tropho_firststrand_merged
parent Combined_RNA-Seq
shortLabel Duffy_Ring-Schiz-Tropho_plus
type bigWig 0 41

track Duffy_Ring-Schiz-Tropho_minus
bigDataUrl contrib/VEuPathDB/bbi/Duffy_Ring-Schiz-Tropho_minus.bw
color 110,110,110
longLabel Duffy_Ring-Schiz-Tropho_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Duffy_Ring-Schiz-Tropho_minus
type bigWig 0 38

track Gomez-Diaz_asexual_stages_plus
bigDataUrl contrib/VEuPathDB/bbi/Gomez-Diaz_asexual_stages_plus.bw
color 110,110,150
longLabel Gomez-Diaz_asexual_stages_firststrand_merged
parent Combined_RNA-Seq
shortLabel Gomez-Diaz_asexual_stages_plus
type bigWig 0 55

track Gomez-Diaz_asexual_stages_minus
bigDataUrl contrib/VEuPathDB/bbi/Gomez-Diaz_asexual_stages_minus.bw
color 110,110,140
longLabel Gomez-Diaz_asexual_stages_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Gomez-Diaz_asexual_stages_minus
type bigWig 3 60

track Josling_Schizont_Transcriptomes_plus
bigDataUrl contrib/VEuPathDB/bbi/Josling_Schizont_Transcriptomes_plus.bw
color 110,110,130
longLabel Josling_Schizont_Transcriptomes_firststrand_merged
parent Combined_RNA-Seq
shortLabel Josling_Schizont_Transcriptomes_plus
type bigWig 0 29

track Josling_Schizont_Transcriptomes_minus
bigDataUrl contrib/VEuPathDB/bbi/Josling_Schizont_Transcriptomes_minus.bw
color 110,110,120
longLabel Josling_Schizont_Transcriptomes_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Josling_Schizont_Transcriptomes_minus
type bigWig 0 26

track Kamaliddin_Sequestration_plus
bigDataUrl contrib/VEuPathDB/bbi/Kamaliddin_Sequestration_plus.bw
color 110,150,110
longLabel Kamaliddin_Sequestration_firststrand_merged
parent Combined_RNA-Seq
shortLabel Kamaliddin_Sequestration_plus
type bigWig 0 80

track Kamaliddin_Sequestration_minus
bigDataUrl contrib/VEuPathDB/bbi/Kamaliddin_Sequestration_minus.bw
color 110,140,110
longLabel Kamaliddin_Sequestration_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Kamaliddin_Sequestration_minus
type bigWig 0 77

track Lasonder_Bartfai_Gametocytes_plus
bigDataUrl contrib/VEuPathDB/bbi/Lasonder_Bartfai_Gametocytes_plus.bw
color 110,130,110
longLabel Lasonder_Bartfai_Gametocytes_firststrand_merged
parent Combined_RNA-Seq
shortLabel Lasonder_Bartfai_Gametocytes_plus
type bigWig 0 34

track Lasonder_Bartfai_Gametocytes_minus
bigDataUrl contrib/VEuPathDB/bbi/Lasonder_Bartfai_Gametocytes_minus.bw
color 110,120,110
longLabel Lasonder_Bartfai_Gametocytes_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Lasonder_Bartfai_Gametocytes_minus
type bigWig 0 38

track Lee_Gambian_plus
bigDataUrl contrib/VEuPathDB/bbi/Lee_Gambian_plus.bw
color 150,110,110
longLabel Lee_Gambian_firststrand_merged
parent Combined_RNA-Seq
shortLabel Lee_Gambian_plus
type bigWig 0 762

track Lee_Gambian_minus
bigDataUrl contrib/VEuPathDB/bbi/Lee_Gambian_minus.bw
color 140,110,110
longLabel Lee_Gambian_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Lee_Gambian_minus
type bigWig 0 756

track Lindner_Oocyst_Salivary_plus
bigDataUrl contrib/VEuPathDB/bbi/Lindner_Oocyst_Salivary_plus.bw
color 130,110,110
longLabel Lindner_Oocyst_Salivary_Sporo_firststrand_merged
parent Combined_RNA-Seq
shortLabel Lindner_Oocyst_Salivary_plus
type bigWig 0 34

track Lindner_Oocyst_Salivary_minus
bigDataUrl contrib/VEuPathDB/bbi/Lindner_Oocyst_Salivary_minus.bw
color 120,110,110
longLabel Lindner_Oocyst_Salivary_Sporo_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Lindner_Oocyst_Salivary_minus
type bigWig 0 40

track Newbold_nostrand
bigDataUrl contrib/VEuPathDB/bbi/Newbold_nostrand.bw
color 110,150,150
longLabel Newbold_unstranded_merged
parent Combined_RNA-Seq
shortLabel Newbold_nostrand
type bigWig 1 105

track DC_UTR_2020_nostrand
bigDataUrl contrib/VEuPathDB/bbi/DC_UTR_2020_nostrand.bw
color 110,140,140
longLabel DC_UTR_RNASeq_2020_unstranded_merged
parent Combined_RNA-Seq
shortLabel DC_UTR_2020_nostrand
type bigWig 0 95

track Febrile_temps_plus
bigDataUrl contrib/VEuPathDB/bbi/Febrile_temps_plus.bw
color 110,130,130
longLabel Febrile_temps_RNASeq_firststrand_merged
parent Combined_RNA-Seq
shortLabel Febrile_temps_plus
type bigWig 0 86

track Febrile_temps_minus
bigDataUrl contrib/VEuPathDB/bbi/Febrile_temps_minus.bw
color 110,120,120
longLabel Febrile_temps_RNASeq_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Febrile_temps_minus
type bigWig 0 81

track Scherf_Intraerythrocytic_cycle_plus
bigDataUrl contrib/VEuPathDB/bbi/Scherf_Intraerythrocytic_cycle_plus.bw
color 150,110,150
longLabel Scherf_Intraerythrocytic_cycle_firststrand_merged
parent Combined_RNA-Seq
shortLabel Scherf_Intraerythrocytic_cycle_plus
type bigWig 0 68

track Scherf_Intraerythrocytic_cycle_minus
bigDataUrl contrib/VEuPathDB/bbi/Scherf_Intraerythrocytic_cycle_minus.bw
color 140,110,140
longLabel Scherf_Intraerythrocytic_cycle_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Scherf_Intraerythrocytic_cycle_minus
type bigWig 0 67

track Scherf_Ring_Oocyst_Sporozoite_plus
bigDataUrl contrib/VEuPathDB/bbi/Scherf_Ring_Oocyst_Sporozoite_plus.bw
color 130,110,130
longLabel Scherf_Ring_Oocyst_Sporozoite_firststrand_merged
parent Combined_RNA-Seq
shortLabel Scherf_Ring_Oocyst_Sporozoite_plus
type bigWig 0 47

track Scherf_Ring_Oocyst_Sporozoite_minus
bigDataUrl contrib/VEuPathDB/bbi/Scherf_Ring_Oocyst_Sporozoite_minus.bw
color 120,110,120
longLabel Scherf_Ring_Oocyst_Sporozoite_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Scherf_Ring_Oocyst_Sporozoite_minus
type bigWig 0 41

track Stunnenberg_nostrand
bigDataUrl contrib/VEuPathDB/bbi/Stunnenberg_nostrand.bw
color 150,150,110
longLabel Stunnenberg_unstranded_merged
parent Combined_RNA-Seq
shortLabel Stunnenberg_nostrand
type bigWig 0 123

track Tonkin_Hill_Malaria_plus
bigDataUrl contrib/VEuPathDB/bbi/Tonkin_Hill_Malaria_plus.bw
color 140,140,110
longLabel Tonkin_Hill_Malaria_firststrand_merged
parent Combined_RNA-Seq
shortLabel Tonkin_Hill_Malaria_plus
type bigWig 0 604

track Tonkin_Hill_Malaria_minus
bigDataUrl contrib/VEuPathDB/bbi/Tonkin_Hill_Malaria_minus.bw
color 130,130,110
longLabel Tonkin_Hill_Malaria_secondstrand_merged
parent Combined_RNA-Seq
shortLabel Tonkin_Hill_Malaria_minus
type bigWig 0 675

track Wichers_Intraerythrocytic_Cycle_nostrand
bigDataUrl contrib/VEuPathDB/bbi/Wichers_Intraerythrocytic_Cycle_nostrand.bw
color 120,120,110
longLabel Wichers_Intraerythrocytic_Cycle_unstranded_merged
parent Combined_RNA-Seq
shortLabel Wichers_Intraerythrocytic_Cycle_nostrand
type bigWig 0 110

track IDC2020_Subudhi_plus
bigDataUrl contrib/VEuPathDB/bbi/IDC2020_Subudhi_plus.bw
color 150,150,150
longLabel IDC2020_Subudhi_firststrand_merged
parent Combined_RNA-Seq
shortLabel IDC2020_Subudhi_plus
type bigWig 0 345

track IDC2020_Subudhi_minus
bigDataUrl contrib/VEuPathDB/bbi/IDC2020_Subudhi_minus.bw
color 140,140,140
longLabel IDC2020_Subudhi_secondstrand_merged
parent Combined_RNA-Seq
shortLabel IDC2020_Subudhi_minus
type bigWig 0 308

track invitro_versus_mosquito_plus
bigDataUrl contrib/VEuPathDB/bbi/invitro_versus_mosquito_plus.bw
color 130,130,130
longLabel invitro_versus_mosquito_produced_sporozoite_RNASeq_firststrand_merged
parent Combined_RNA-Seq
shortLabel invitro_versus_mosquito_plus
type bigWig 0 25

track invitro_versus_mosquito_minus
bigDataUrl contrib/VEuPathDB/bbi/invitro_versus_mosquito_minus.bw
color 120,120,120
longLabel invitro_versus_mosquito_produced_sporozoite_RNASeq_secondstrand_merged
parent Combined_RNA-Seq
shortLabel invitro_versus_mosquito_minus
type bigWig 0 31