# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.H.M.1B.5 # Taxid: 2209 # BioSample: SAMN02708954 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPW01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 43.6x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979045.1 # RefSeq assembly accession: GCF_000979045.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979085.1 GCF_000979085.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold14_1_size69148-refined unplaced-scaffold na na JJPW01000001.1 = NZ_JJPW01000001.1 Primary Assembly 68811 na scaffold32_1_size41910-refined unplaced-scaffold na na JJPW01000002.1 = NZ_JJPW01000002.1 Primary Assembly 41810 na scaffold119_1_size2520-refined unplaced-scaffold na na JJPW01000003.1 = NZ_JJPW01000003.1 Primary Assembly 2520 na scaffold127_1_size1257-refined unplaced-scaffold na na JJPW01000004.1 = NZ_JJPW01000004.1 Primary Assembly 1257 na scaffold6_1_size183920-refined unplaced-scaffold na na JJPW01000005.1 = NZ_JJPW01000005.1 Primary Assembly 183135 na scaffold132_1_size832-refined unplaced-scaffold na na JJPW01000006.1 = NZ_JJPW01000006.1 Primary Assembly 832 na scaffold97_1_size6675-refined unplaced-scaffold na na JJPW01000007.1 = NZ_JJPW01000007.1 Primary Assembly 6675 na scaffold62_1_size30829-refined unplaced-scaffold na na JJPW01000008.1 = NZ_JJPW01000008.1 Primary Assembly 30557 na scaffold92_1_size8888-refined unplaced-scaffold na na JJPW01000009.1 = NZ_JJPW01000009.1 Primary Assembly 8888 na scaffold35_1_size39960-refined unplaced-scaffold na na JJPW01000010.1 = NZ_JJPW01000010.1 Primary Assembly 39861 na scaffold114_1_size2960-refined unplaced-scaffold na na JJPW01000011.1 = NZ_JJPW01000011.1 Primary Assembly 2960 na scaffold2_1_size115261-refined unplaced-scaffold na na JJPW01000012.1 = NZ_JJPW01000012.1 Primary Assembly 114866 na scaffold15_1_size63267-refined unplaced-scaffold na na JJPW01000013.1 = NZ_JJPW01000013.1 Primary Assembly 63267 na scaffold102_1_size4476-refined unplaced-scaffold na na JJPW01000014.1 = NZ_JJPW01000014.1 Primary Assembly 4476 na scaffold63_1_size23992-refined unplaced-scaffold na na JJPW01000015.1 = NZ_JJPW01000015.1 Primary Assembly 23992 na scaffold110_1_size3148-refined unplaced-scaffold na na JJPW01000016.1 = NZ_JJPW01000016.1 Primary Assembly 3148 na scaffold95_1_size7280-refined unplaced-scaffold na na JJPW01000017.1 = NZ_JJPW01000017.1 Primary Assembly 7198 na scaffold80_1_size14554-refined unplaced-scaffold na na JJPW01000018.1 = NZ_JJPW01000018.1 Primary Assembly 14554 na scaffold30_1_size79441-refined unplaced-scaffold na na JJPW01000019.1 = NZ_JJPW01000019.1 Primary Assembly 79244 na scaffold50_1_size29069-refined unplaced-scaffold na na JJPW01000020.1 = NZ_JJPW01000020.1 Primary Assembly 28883 na scaffold137_1_size934-refined unplaced-scaffold na na JJPW01000021.1 = NZ_JJPW01000021.1 Primary Assembly 934 na scaffold25_1_size44720-refined unplaced-scaffold na na JJPW01000022.1 = NZ_JJPW01000022.1 Primary Assembly 44614 na scaffold38_1_size38752-refined unplaced-scaffold na na JJPW01000023.1 = NZ_JJPW01000023.1 Primary Assembly 38455 na scaffold8_1_size90800-refined unplaced-scaffold na na JJPW01000024.1 = NZ_JJPW01000024.1 Primary Assembly 90400 na scaffold108_1_size3366-refined unplaced-scaffold na na JJPW01000025.1 = NZ_JJPW01000025.1 Primary Assembly 3366 na scaffold84_1_size11967-refined unplaced-scaffold na na JJPW01000026.1 = NZ_JJPW01000026.1 Primary Assembly 11953 na scaffold71_1_size18888-refined unplaced-scaffold na na JJPW01000027.1 = NZ_JJPW01000027.1 Primary Assembly 18788 na scaffold128_1_size1231-refined unplaced-scaffold na na JJPW01000028.1 = NZ_JJPW01000028.1 Primary Assembly 1231 na scaffold86_1_size11604-refined unplaced-scaffold na na JJPW01000029.1 = NZ_JJPW01000029.1 Primary Assembly 11604 na scaffold29_1_size42818-refined unplaced-scaffold na na JJPW01000030.1 = NZ_JJPW01000030.1 Primary Assembly 42718 na scaffold101_1_size6027-refined unplaced-scaffold na na JJPW01000031.1 = NZ_JJPW01000031.1 Primary Assembly 6027 na scaffold68_1_size20547-refined unplaced-scaffold na na JJPW01000032.1 = NZ_JJPW01000032.1 Primary Assembly 20547 na scaffold85_1_size21097-refined unplaced-scaffold na na JJPW01000033.1 = NZ_JJPW01000033.1 Primary Assembly 21097 na scaffold65_1_size22341-refined unplaced-scaffold na na JJPW01000034.1 = NZ_JJPW01000034.1 Primary Assembly 22341 na scaffold40_1_size36894-refined unplaced-scaffold na na JJPW01000035.1 = NZ_JJPW01000035.1 Primary Assembly 36894 na scaffold117_1_size2738-refined unplaced-scaffold na na JJPW01000036.1 = NZ_JJPW01000036.1 Primary Assembly 2738 na scaffold67_1_size21303-refined unplaced-scaffold na na JJPW01000037.1 = NZ_JJPW01000037.1 Primary Assembly 21303 na scaffold57_1_size26813-refined unplaced-scaffold na na JJPW01000038.1 = NZ_JJPW01000038.1 Primary Assembly 26813 na scaffold51_1_size28995-refined unplaced-scaffold na na JJPW01000039.1 = NZ_JJPW01000039.1 Primary Assembly 28995 na scaffold70_1_size18904-refined unplaced-scaffold na na JJPW01000040.1 = NZ_JJPW01000040.1 Primary Assembly 18804 na scaffold9_1_size83956-refined unplaced-scaffold na na JJPW01000041.1 = NZ_JJPW01000041.1 Primary Assembly 83955 na scaffold64_1_size23373-refined unplaced-scaffold na na JJPW01000042.1 = NZ_JJPW01000042.1 Primary Assembly 23373 na scaffold105_1_size3883-refined unplaced-scaffold na na JJPW01000043.1 = NZ_JJPW01000043.1 Primary Assembly 3883 na scaffold121_1_size2266-refined unplaced-scaffold na na JJPW01000044.1 = NZ_JJPW01000044.1 Primary Assembly 2266 na scaffold31_1_size45945-refined unplaced-scaffold na na JJPW01000045.1 = NZ_JJPW01000045.1 Primary Assembly 45845 na scaffold20_1_size54748-refined unplaced-scaffold na na JJPW01000046.1 = NZ_JJPW01000046.1 Primary Assembly 54357 na scaffold87_1_size10708-refined unplaced-scaffold na na JJPW01000047.1 = NZ_JJPW01000047.1 Primary Assembly 10708 na scaffold3_1_size113331-refined unplaced-scaffold na na JJPW01000048.1 = NZ_JJPW01000048.1 Primary Assembly 112339 na scaffold19_1_size52841-refined unplaced-scaffold na na JJPW01000049.1 = NZ_JJPW01000049.1 Primary Assembly 52826 na scaffold61_1_size24449-refined unplaced-scaffold na na JJPW01000050.1 = NZ_JJPW01000050.1 Primary Assembly 24355 na scaffold55_1_size53629-refined unplaced-scaffold na na JJPW01000051.1 = NZ_JJPW01000051.1 Primary Assembly 51114 na scaffold18_1_size54280-refined unplaced-scaffold na na JJPW01000052.1 = NZ_JJPW01000052.1 Primary Assembly 54280 na scaffold5_1_size95505-refined unplaced-scaffold na na JJPW01000053.1 = NZ_JJPW01000053.1 Primary Assembly 95346 na scaffold126_1_size1554-refined unplaced-scaffold na na JJPW01000054.1 = NZ_JJPW01000054.1 Primary Assembly 1554 na scaffold39_1_size37639-refined unplaced-scaffold na na JJPW01000055.1 = NZ_JJPW01000055.1 Primary Assembly 37361 na scaffold27_1_size84933-refined unplaced-scaffold na na JJPW01000056.1 = NZ_JJPW01000056.1 Primary Assembly 84426 na scaffold134_1_size676-refined unplaced-scaffold na na JJPW01000057.1 = NZ_JJPW01000057.1 Primary Assembly 676 na scaffold28_1_size43768-refined unplaced-scaffold na na JJPW01000058.1 = NZ_JJPW01000058.1 Primary Assembly 43768 na scaffold73_1_size17587-refined unplaced-scaffold na na JJPW01000059.1 = NZ_JJPW01000059.1 Primary Assembly 17587 na scaffold7_1_size122574-refined unplaced-scaffold na na JJPW01000060.1 = NZ_JJPW01000060.1 Primary Assembly 121240 na scaffold76_1_size16614-refined unplaced-scaffold na na JJPW01000061.1 = NZ_JJPW01000061.1 Primary Assembly 16614 na scaffold100_1_size6327-refined unplaced-scaffold na na JJPW01000062.1 = NZ_JJPW01000062.1 Primary Assembly 6327 na scaffold47_1_size53273-refined unplaced-scaffold na na JJPW01000063.1 = NZ_JJPW01000063.1 Primary Assembly 53273 na scaffold26_1_size58755-refined unplaced-scaffold na na JJPW01000064.1 = NZ_JJPW01000064.1 Primary Assembly 58675 na scaffold129_1_size1144-refined unplaced-scaffold na na JJPW01000065.1 = NZ_JJPW01000065.1 Primary Assembly 1144 na scaffold16_1_size55954-refined unplaced-scaffold na na JJPW01000066.1 = NZ_JJPW01000066.1 Primary Assembly 55954 na scaffold21_1_size50310-refined unplaced-scaffold na na JJPW01000067.1 = NZ_JJPW01000067.1 Primary Assembly 50223 na scaffold116_1_size2744-refined unplaced-scaffold na na JJPW01000068.1 = NZ_JJPW01000068.1 Primary Assembly 2744 na scaffold10_1_size80854-refined unplaced-scaffold na na JJPW01000069.1 = NZ_JJPW01000069.1 Primary Assembly 80764 na scaffold1_1_size140705-refined unplaced-scaffold na na JJPW01000070.1 = NZ_JJPW01000070.1 Primary Assembly 140522 na scaffold56_1_size28262-refined unplaced-scaffold na na JJPW01000071.1 = NZ_JJPW01000071.1 Primary Assembly 27918 na scaffold46_1_size32331-refined unplaced-scaffold na na JJPW01000072.1 = NZ_JJPW01000072.1 Primary Assembly 32331 na scaffold98_1_size6628-refined unplaced-scaffold na na JJPW01000073.1 = NZ_JJPW01000073.1 Primary Assembly 6628 na scaffold124_1_size2602-refined unplaced-scaffold na na JJPW01000074.1 = NZ_JJPW01000074.1 Primary Assembly 2602 na scaffold115_1_size2868-refined unplaced-scaffold na na JJPW01000075.1 = NZ_JJPW01000075.1 Primary Assembly 2868 na scaffold93_1_size8413-refined unplaced-scaffold na na JJPW01000076.1 = NZ_JJPW01000076.1 Primary Assembly 8413 na scaffold122_1_size2066-refined unplaced-scaffold na na JJPW01000077.1 = NZ_JJPW01000077.1 Primary Assembly 2066 na scaffold13_1_size132519-refined unplaced-scaffold na na JJPW01000078.1 = NZ_JJPW01000078.1 Primary Assembly 132028 na scaffold23_1_size47768-refined unplaced-scaffold na na JJPW01000079.1 = NZ_JJPW01000079.1 Primary Assembly 47518 na scaffold104_1_size4126-refined unplaced-scaffold na na JJPW01000080.1 = NZ_JJPW01000080.1 Primary Assembly 4126 na scaffold36_1_size39813-refined unplaced-scaffold na na JJPW01000081.1 = NZ_JJPW01000081.1 Primary Assembly 36807 na scaffold107_1_size3428-refined unplaced-scaffold na na JJPW01000082.1 = NZ_JJPW01000082.1 Primary Assembly 3328 na scaffold44_1_size39313-refined unplaced-scaffold na na JJPW01000083.1 = NZ_JJPW01000083.1 Primary Assembly 39313 na scaffold130_1_size1097-refined unplaced-scaffold na na JJPW01000084.1 = NZ_JJPW01000084.1 Primary Assembly 1097 na scaffold131_1_size922-refined unplaced-scaffold na na JJPW01000085.1 = NZ_JJPW01000085.1 Primary Assembly 922 na scaffold69_1_size21167-refined unplaced-scaffold na na JJPW01000086.1 = NZ_JJPW01000086.1 Primary Assembly 21248 na scaffold103_1_size4354-refined unplaced-scaffold na na JJPW01000087.1 = NZ_JJPW01000087.1 Primary Assembly 4314 na scaffold54_1_size27586-refined unplaced-scaffold na na JJPW01000088.1 = NZ_JJPW01000088.1 Primary Assembly 27597 na scaffold112_1_size3022-refined unplaced-scaffold na na JJPW01000089.1 = NZ_JJPW01000089.1 Primary Assembly 3022 na scaffold33_1_size56894-refined unplaced-scaffold na na JJPW01000090.1 = NZ_JJPW01000090.1 Primary Assembly 56894 na scaffold106_1_size3664-refined unplaced-scaffold na na JJPW01000091.1 = NZ_JJPW01000091.1 Primary Assembly 3664 na scaffold42_1_size34274-refined unplaced-scaffold na na JJPW01000092.1 = NZ_JJPW01000092.1 Primary Assembly 34070 na scaffold109_1_size3342-refined unplaced-scaffold na na JJPW01000093.1 = NZ_JJPW01000093.1 Primary Assembly 3342 na scaffold89_1_size8967-refined unplaced-scaffold na na JJPW01000094.1 = NZ_JJPW01000094.1 Primary Assembly 8967 na scaffold118_1_size3001-refined unplaced-scaffold na na JJPW01000095.1 = NZ_JJPW01000095.1 Primary Assembly 3001 na scaffold88_1_size10199-refined unplaced-scaffold na na JJPW01000096.1 = NZ_JJPW01000096.1 Primary Assembly 10199 na scaffold96_1_size13359-refined unplaced-scaffold na na JJPW01000097.1 = NZ_JJPW01000097.1 Primary Assembly 12837 na scaffold60_1_size24610-refined unplaced-scaffold na na JJPW01000098.1 = NZ_JJPW01000098.1 Primary Assembly 24610 na scaffold45_1_size35962-refined unplaced-scaffold na na JJPW01000099.1 = NZ_JJPW01000099.1 Primary Assembly 35475 na scaffold82_1_size13808-refined unplaced-scaffold na na JJPW01000100.1 = NZ_JJPW01000100.1 Primary Assembly 13808 na scaffold91_1_size8673-refined unplaced-scaffold na na JJPW01000101.1 = NZ_JJPW01000101.1 Primary Assembly 8673 na scaffold123_1_size1863-refined unplaced-scaffold na na JJPW01000102.1 = NZ_JJPW01000102.1 Primary Assembly 1863 na scaffold48_1_size30990-refined unplaced-scaffold na na JJPW01000103.1 = NZ_JJPW01000103.1 Primary Assembly 30990 na scaffold133_1_size818-refined unplaced-scaffold na na JJPW01000104.1 = NZ_JJPW01000104.1 Primary Assembly 818 na scaffold4_1_size96692-refined unplaced-scaffold na na JJPW01000105.1 = NZ_JJPW01000105.1 Primary Assembly 96491 na scaffold59_1_size25574-refined unplaced-scaffold na na JJPW01000106.1 = NZ_JJPW01000106.1 Primary Assembly 25574 na scaffold83_1_size13249-refined unplaced-scaffold na na JJPW01000107.1 = NZ_JJPW01000107.1 Primary Assembly 13249 na scaffold78_1_size15624-refined unplaced-scaffold na na JJPW01000108.1 = NZ_JJPW01000108.1 Primary Assembly 15624 na scaffold52_1_size28394-refined unplaced-scaffold na na JJPW01000109.1 = NZ_JJPW01000109.1 Primary Assembly 28394 na scaffold43_1_size39329-refined unplaced-scaffold na na JJPW01000110.1 = NZ_JJPW01000110.1 Primary Assembly 36122 na scaffold11_1_size75834-refined unplaced-scaffold na na JJPW01000111.1 = NZ_JJPW01000111.1 Primary Assembly 75701 na scaffold37_1_size38878-refined unplaced-scaffold na na JJPW01000112.1 = NZ_JJPW01000112.1 Primary Assembly 38878 na scaffold94_1_size7536-refined unplaced-scaffold na na JJPW01000113.1 = NZ_JJPW01000113.1 Primary Assembly 7536 na scaffold74_1_size17473-refined unplaced-scaffold na na JJPW01000114.1 = NZ_JJPW01000114.1 Primary Assembly 17473 na scaffold24_1_size46581-refined unplaced-scaffold na na JJPW01000115.1 = NZ_JJPW01000115.1 Primary Assembly 46545 na scaffold120_1_size2353-refined unplaced-scaffold na na JJPW01000116.1 = NZ_JJPW01000116.1 Primary Assembly 2353 na scaffold75_1_size17206-refined unplaced-scaffold na na JJPW01000117.1 = NZ_JJPW01000117.1 Primary Assembly 17206 na scaffold12_1_size75169-refined unplaced-scaffold na na JJPW01000118.1 = NZ_JJPW01000118.1 Primary Assembly 75069 na scaffold81_1_size14307-refined unplaced-scaffold na na JJPW01000119.1 = NZ_JJPW01000119.1 Primary Assembly 14307 na scaffold90_1_size8893-refined unplaced-scaffold na na JJPW01000120.1 = NZ_JJPW01000120.1 Primary Assembly 8893 na scaffold79_1_size14969-refined unplaced-scaffold na na JJPW01000121.1 = NZ_JJPW01000121.1 Primary Assembly 14969 na scaffold66_1_size21507-refined unplaced-scaffold na na JJPW01000122.1 = NZ_JJPW01000122.1 Primary Assembly 21507 na scaffold113_1_size2985-refined unplaced-scaffold na na JJPW01000123.1 = NZ_JJPW01000123.1 Primary Assembly 2985 na scaffold135_1_size524-refined unplaced-scaffold na na JJPW01000124.1 = NZ_JJPW01000124.1 Primary Assembly 524 na scaffold53_1_size28108-refined unplaced-scaffold na na JJPW01000125.1 = NZ_JJPW01000125.1 Primary Assembly 28108 na scaffold99_1_size6528-refined unplaced-scaffold na na JJPW01000126.1 = NZ_JJPW01000126.1 Primary Assembly 6528 na scaffold72_1_size18428-refined unplaced-scaffold na na JJPW01000127.1 = NZ_JJPW01000127.1 Primary Assembly 18428 na scaffold34_1_size41680-refined unplaced-scaffold na na JJPW01000128.1 = NZ_JJPW01000128.1 Primary Assembly 41680 na scaffold17_1_size55814-refined unplaced-scaffold na na JJPW01000129.1 = NZ_JJPW01000129.1 Primary Assembly 55656 na scaffold49_1_size30601-refined unplaced-scaffold na na JJPW01000130.1 = NZ_JJPW01000130.1 Primary Assembly 30601 na scaffold58_1_size26061-refined unplaced-scaffold na na JJPW01000131.1 = NZ_JJPW01000131.1 Primary Assembly 26061 na scaffold22_1_size64106-refined unplaced-scaffold na na JJPW01000132.1 = NZ_JJPW01000132.1 Primary Assembly 63551 na scaffold125_1_size1565-refined unplaced-scaffold na na JJPW01000133.1 = NZ_JJPW01000133.1 Primary Assembly 1565 na scaffold77_1_size15814-refined unplaced-scaffold na na JJPW01000134.1 = NZ_JJPW01000134.1 Primary Assembly 15715 na scaffold111_1_size3067-refined unplaced-scaffold na na JJPW01000135.1 = NZ_JJPW01000135.1 Primary Assembly 3067 na scaffold41_1_size35051-refined unplaced-scaffold na na JJPW01000136.1 = NZ_JJPW01000136.1 Primary Assembly 35051 na