# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=1.H.A.1A.4 # Taxid: 2209 # BioSample: SAMN02708935 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJQI01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 45.1x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979185.1 # RefSeq assembly accession: GCF_000979185.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979225.1 GCF_000979225.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold66_1_size15093-refined unplaced-scaffold na na JJQI01000001.1 = NZ_JJQI01000001.1 Primary Assembly 15093 na scaffold59_1_size18311-refined unplaced-scaffold na na JJQI01000002.1 = NZ_JJQI01000002.1 Primary Assembly 18311 na scaffold31_1_size32559-refined unplaced-scaffold na na JJQI01000003.1 = NZ_JJQI01000003.1 Primary Assembly 32559 na scaffold5_1_size142723-refined unplaced-scaffold na na JJQI01000004.1 = NZ_JJQI01000004.1 Primary Assembly 142344 na scaffold41_1_size49401-refined unplaced-scaffold na na JJQI01000005.1 = NZ_JJQI01000005.1 Primary Assembly 49118 na scaffold112_1_size1536-refined unplaced-scaffold na na JJQI01000006.1 = NZ_JJQI01000006.1 Primary Assembly 1536 na scaffold52_1_size21149-refined unplaced-scaffold na na JJQI01000007.1 = NZ_JJQI01000007.1 Primary Assembly 21149 na scaffold11_1_size127167-refined unplaced-scaffold na na JJQI01000008.1 = NZ_JJQI01000008.1 Primary Assembly 126969 na scaffold101_1_size3882-refined unplaced-scaffold na na JJQI01000009.1 = NZ_JJQI01000009.1 Primary Assembly 3882 na scaffold91_1_size4306-refined unplaced-scaffold na na JJQI01000010.1 = NZ_JJQI01000010.1 Primary Assembly 4306 na scaffold96_1_size3778-refined unplaced-scaffold na na JJQI01000011.1 = NZ_JJQI01000011.1 Primary Assembly 3778 na scaffold88_1_size5049-refined unplaced-scaffold na na JJQI01000012.1 = NZ_JJQI01000012.1 Primary Assembly 4951 na scaffold63_1_size15873-refined unplaced-scaffold na na JJQI01000013.1 = NZ_JJQI01000013.1 Primary Assembly 15873 na scaffold87_1_size5141-refined unplaced-scaffold na na JJQI01000014.1 = NZ_JJQI01000014.1 Primary Assembly 4990 na scaffold72_1_size18598-refined unplaced-scaffold na na JJQI01000015.1 = NZ_JJQI01000015.1 Primary Assembly 18598 na scaffold28_1_size34086-refined unplaced-scaffold na na JJQI01000016.1 = NZ_JJQI01000016.1 Primary Assembly 33986 na scaffold17_1_size55039-refined unplaced-scaffold na na JJQI01000017.1 = NZ_JJQI01000017.1 Primary Assembly 54945 na scaffold119_1_size934-refined unplaced-scaffold na na JJQI01000018.1 = NZ_JJQI01000018.1 Primary Assembly 934 na scaffold85_1_size5383-refined unplaced-scaffold na na JJQI01000019.1 = NZ_JJQI01000019.1 Primary Assembly 5383 na scaffold115_1_size1186-refined unplaced-scaffold na na JJQI01000020.1 = NZ_JJQI01000020.1 Primary Assembly 1186 na scaffold13_1_size63063-refined unplaced-scaffold na na JJQI01000021.1 = NZ_JJQI01000021.1 Primary Assembly 62738 na scaffold94_1_size4008-refined unplaced-scaffold na na JJQI01000022.1 = NZ_JJQI01000022.1 Primary Assembly 4008 na scaffold90_1_size4322-refined unplaced-scaffold na na JJQI01000023.1 = NZ_JJQI01000023.1 Primary Assembly 4249 na scaffold80_1_size13380-refined unplaced-scaffold na na JJQI01000024.1 = NZ_JJQI01000024.1 Primary Assembly 13256 na scaffold69_1_size11729-refined unplaced-scaffold na na JJQI01000025.1 = NZ_JJQI01000025.1 Primary Assembly 11705 na scaffold1_1_size434466-refined unplaced-scaffold na na JJQI01000026.1 = NZ_JJQI01000026.1 Primary Assembly 433240 na scaffold117_1_size1095-refined unplaced-scaffold na na JJQI01000027.1 = NZ_JJQI01000027.1 Primary Assembly 1095 na scaffold100_1_size2904-refined unplaced-scaffold na na JJQI01000028.1 = NZ_JJQI01000028.1 Primary Assembly 2904 na scaffold79_1_size7514-refined unplaced-scaffold na na JJQI01000029.1 = NZ_JJQI01000029.1 Primary Assembly 7514 na scaffold78_1_size8019-refined unplaced-scaffold na na JJQI01000030.1 = NZ_JJQI01000030.1 Primary Assembly 8019 na scaffold51_1_size48690-refined unplaced-scaffold na na JJQI01000031.1 = NZ_JJQI01000031.1 Primary Assembly 48691 na scaffold95_1_size3781-refined unplaced-scaffold na na JJQI01000032.1 = NZ_JJQI01000032.1 Primary Assembly 3781 na scaffold114_1_size1209-refined unplaced-scaffold na na JJQI01000033.1 = NZ_JJQI01000033.1 Primary Assembly 1209 na scaffold97_1_size3516-refined unplaced-scaffold na na JJQI01000034.1 = NZ_JJQI01000034.1 Primary Assembly 3516 na scaffold45_1_size25050-refined unplaced-scaffold na na JJQI01000035.1 = NZ_JJQI01000035.1 Primary Assembly 25050 na scaffold26_1_size36063-refined unplaced-scaffold na na JJQI01000036.1 = NZ_JJQI01000036.1 Primary Assembly 36063 na scaffold37_1_size38106-refined unplaced-scaffold na na JJQI01000037.1 = NZ_JJQI01000037.1 Primary Assembly 38106 na scaffold65_1_size15394-refined unplaced-scaffold na na JJQI01000038.1 = NZ_JJQI01000038.1 Primary Assembly 15394 na scaffold70_1_size11520-refined unplaced-scaffold na na JJQI01000039.1 = NZ_JJQI01000039.1 Primary Assembly 11520 na scaffold36_1_size29825-refined unplaced-scaffold na na JJQI01000040.1 = NZ_JJQI01000040.1 Primary Assembly 29825 na scaffold8_1_size85720-refined unplaced-scaffold na na JJQI01000041.1 = NZ_JJQI01000041.1 Primary Assembly 82593 na scaffold62_1_size16326-refined unplaced-scaffold na na JJQI01000042.1 = NZ_JJQI01000042.1 Primary Assembly 16226 na scaffold44_1_size25349-refined unplaced-scaffold na na JJQI01000043.1 = NZ_JJQI01000043.1 Primary Assembly 25349 na scaffold64_1_size15519-refined unplaced-scaffold na na JJQI01000044.1 = NZ_JJQI01000044.1 Primary Assembly 15519 na scaffold10_1_size68066-refined unplaced-scaffold na na JJQI01000045.1 = NZ_JJQI01000045.1 Primary Assembly 67853 na scaffold35_1_size30375-refined unplaced-scaffold na na JJQI01000046.1 = NZ_JJQI01000046.1 Primary Assembly 30375 na scaffold42_1_size25930-refined unplaced-scaffold na na JJQI01000047.1 = NZ_JJQI01000047.1 Primary Assembly 25930 na scaffold92_1_size4154-refined unplaced-scaffold na na JJQI01000048.1 = NZ_JJQI01000048.1 Primary Assembly 4154 na scaffold57_1_size18488-refined unplaced-scaffold na na JJQI01000049.1 = NZ_JJQI01000049.1 Primary Assembly 18488 na scaffold84_1_size6235-refined unplaced-scaffold na na JJQI01000050.1 = NZ_JJQI01000050.1 Primary Assembly 5981 na scaffold116_1_size1096-refined unplaced-scaffold na na JJQI01000051.1 = NZ_JJQI01000051.1 Primary Assembly 1096 na scaffold103_1_size2315-refined unplaced-scaffold na na JJQI01000052.1 = NZ_JJQI01000052.1 Primary Assembly 2315 na scaffold23_1_size52549-refined unplaced-scaffold na na JJQI01000053.1 = NZ_JJQI01000053.1 Primary Assembly 52549 na scaffold113_1_size1343-refined unplaced-scaffold na na JJQI01000054.1 = NZ_JJQI01000054.1 Primary Assembly 1330 na scaffold86_1_size5363-refined unplaced-scaffold na na JJQI01000055.1 = NZ_JJQI01000055.1 Primary Assembly 5363 na scaffold81_1_size6629-refined unplaced-scaffold na na JJQI01000056.1 = NZ_JJQI01000056.1 Primary Assembly 6629 na scaffold55_1_size19544-refined unplaced-scaffold na na JJQI01000057.1 = NZ_JJQI01000057.1 Primary Assembly 19319 na scaffold25_1_size40624-refined unplaced-scaffold na na JJQI01000058.1 = NZ_JJQI01000058.1 Primary Assembly 40542 na scaffold7_1_size99254-refined unplaced-scaffold na na JJQI01000059.1 = NZ_JJQI01000059.1 Primary Assembly 99060 na scaffold105_1_size1945-refined unplaced-scaffold na na JJQI01000060.1 = NZ_JJQI01000060.1 Primary Assembly 1945 na scaffold118_1_size1006-refined unplaced-scaffold na na JJQI01000061.1 = NZ_JJQI01000061.1 Primary Assembly 1006 na scaffold24_1_size97709-refined unplaced-scaffold na na JJQI01000062.1 = NZ_JJQI01000062.1 Primary Assembly 97509 na scaffold111_1_size1560-refined unplaced-scaffold na na JJQI01000063.1 = NZ_JJQI01000063.1 Primary Assembly 1560 na scaffold49_1_size22492-refined unplaced-scaffold na na JJQI01000064.1 = NZ_JJQI01000064.1 Primary Assembly 22492 na scaffold6_1_size103148-refined unplaced-scaffold na na JJQI01000065.1 = NZ_JJQI01000065.1 Primary Assembly 102886 na scaffold30_1_size43710-refined unplaced-scaffold na na JJQI01000066.1 = NZ_JJQI01000066.1 Primary Assembly 39975 na scaffold58_1_size18433-refined unplaced-scaffold na na JJQI01000067.1 = NZ_JJQI01000067.1 Primary Assembly 18433 na scaffold98_1_size3175-refined unplaced-scaffold na na JJQI01000068.1 = NZ_JJQI01000068.1 Primary Assembly 3175 na scaffold12_1_size114071-refined unplaced-scaffold na na JJQI01000069.1 = NZ_JJQI01000069.1 Primary Assembly 113835 na scaffold29_1_size34072-refined unplaced-scaffold na na JJQI01000070.1 = NZ_JJQI01000070.1 Primary Assembly 34072 na scaffold121_1_size773-refined unplaced-scaffold na na JJQI01000071.1 = NZ_JJQI01000071.1 Primary Assembly 773 na scaffold4_1_size186034-refined unplaced-scaffold na na JJQI01000072.1 = NZ_JJQI01000072.1 Primary Assembly 185393 na scaffold48_1_size33215-refined unplaced-scaffold na na JJQI01000073.1 = NZ_JJQI01000073.1 Primary Assembly 33068 na scaffold123_1_size520-refined unplaced-scaffold na na JJQI01000074.1 = NZ_JJQI01000074.1 Primary Assembly 520 na scaffold39_1_size27545-refined unplaced-scaffold na na JJQI01000075.1 = NZ_JJQI01000075.1 Primary Assembly 27293 na scaffold99_1_size3137-refined unplaced-scaffold na na JJQI01000076.1 = NZ_JJQI01000076.1 Primary Assembly 3139 na scaffold27_1_size35274-refined unplaced-scaffold na na JJQI01000077.1 = NZ_JJQI01000077.1 Primary Assembly 35274 na scaffold77_1_size8374-refined unplaced-scaffold na na JJQI01000078.1 = NZ_JJQI01000078.1 Primary Assembly 8374 na scaffold53_1_size19937-refined unplaced-scaffold na na JJQI01000079.1 = NZ_JJQI01000079.1 Primary Assembly 19937 na scaffold109_1_size1628-refined unplaced-scaffold na na JJQI01000080.1 = NZ_JJQI01000080.1 Primary Assembly 1628 na scaffold107_1_size1800-refined unplaced-scaffold na na JJQI01000081.1 = NZ_JJQI01000081.1 Primary Assembly 1800 na scaffold74_1_size10280-refined unplaced-scaffold na na JJQI01000082.1 = NZ_JJQI01000082.1 Primary Assembly 10280 na scaffold60_1_size18041-refined unplaced-scaffold na na JJQI01000083.1 = NZ_JJQI01000083.1 Primary Assembly 18041 na scaffold20_1_size52345-refined unplaced-scaffold na na JJQI01000084.1 = NZ_JJQI01000084.1 Primary Assembly 52327 na scaffold122_1_size770-refined unplaced-scaffold na na JJQI01000085.1 = NZ_JJQI01000085.1 Primary Assembly 770 na scaffold102_1_size2725-refined unplaced-scaffold na na JJQI01000086.1 = NZ_JJQI01000086.1 Primary Assembly 2725 na scaffold104_1_size4138-refined unplaced-scaffold na na JJQI01000087.1 = NZ_JJQI01000087.1 Primary Assembly 4138 na scaffold21_1_size50595-refined unplaced-scaffold na na JJQI01000088.1 = NZ_JJQI01000088.1 Primary Assembly 50595 na scaffold40_1_size29811-refined unplaced-scaffold na na JJQI01000089.1 = NZ_JJQI01000089.1 Primary Assembly 29611 na scaffold19_1_size79513-refined unplaced-scaffold na na JJQI01000090.1 = NZ_JJQI01000090.1 Primary Assembly 79487 na scaffold34_1_size30792-refined unplaced-scaffold na na JJQI01000091.1 = NZ_JJQI01000091.1 Primary Assembly 30644 na scaffold38_1_size28353-refined unplaced-scaffold na na JJQI01000092.1 = NZ_JJQI01000092.1 Primary Assembly 28331 na scaffold89_1_size4753-refined unplaced-scaffold na na JJQI01000093.1 = NZ_JJQI01000093.1 Primary Assembly 4753 na scaffold2_1_size147667-refined unplaced-scaffold na na JJQI01000094.1 = NZ_JJQI01000094.1 Primary Assembly 147206 na scaffold106_1_size1911-refined unplaced-scaffold na na JJQI01000095.1 = NZ_JJQI01000095.1 Primary Assembly 1911 na scaffold61_1_size17580-refined unplaced-scaffold na na JJQI01000096.1 = NZ_JJQI01000096.1 Primary Assembly 17505 na scaffold54_1_size32549-refined unplaced-scaffold na na JJQI01000097.1 = NZ_JJQI01000097.1 Primary Assembly 32549 na scaffold50_1_size22241-refined unplaced-scaffold na na JJQI01000098.1 = NZ_JJQI01000098.1 Primary Assembly 22241 na scaffold9_1_size84405-refined unplaced-scaffold na na JJQI01000099.1 = NZ_JJQI01000099.1 Primary Assembly 84126 na scaffold67_1_size13963-refined unplaced-scaffold na na JJQI01000100.1 = NZ_JJQI01000100.1 Primary Assembly 13963 na scaffold32_1_size32113-refined unplaced-scaffold na na JJQI01000101.1 = NZ_JJQI01000101.1 Primary Assembly 31764 na scaffold108_1_size1772-refined unplaced-scaffold na na JJQI01000102.1 = NZ_JJQI01000102.1 Primary Assembly 1772 na scaffold71_1_size13119-refined unplaced-scaffold na na JJQI01000103.1 = NZ_JJQI01000103.1 Primary Assembly 13119 na scaffold82_1_size6622-refined unplaced-scaffold na na JJQI01000104.1 = NZ_JJQI01000104.1 Primary Assembly 6622 na scaffold68_1_size13069-refined unplaced-scaffold na na JJQI01000105.1 = NZ_JJQI01000105.1 Primary Assembly 13069 na scaffold110_1_size1584-refined unplaced-scaffold na na JJQI01000106.1 = NZ_JJQI01000106.1 Primary Assembly 1584 na scaffold46_1_size23880-refined unplaced-scaffold na na JJQI01000107.1 = NZ_JJQI01000107.1 Primary Assembly 23804 na scaffold83_1_size9716-refined unplaced-scaffold na na JJQI01000108.1 = NZ_JJQI01000108.1 Primary Assembly 9416 na scaffold15_1_size59654-refined unplaced-scaffold na na JJQI01000109.1 = NZ_JJQI01000109.1 Primary Assembly 59654 na scaffold18_1_size54713-refined unplaced-scaffold na na JJQI01000110.1 = NZ_JJQI01000110.1 Primary Assembly 54688 na scaffold76_1_size8377-refined unplaced-scaffold na na JJQI01000111.1 = NZ_JJQI01000111.1 Primary Assembly 8377 na scaffold56_1_size18698-refined unplaced-scaffold na na JJQI01000112.1 = NZ_JJQI01000112.1 Primary Assembly 18698 na scaffold75_1_size12027-refined unplaced-scaffold na na JJQI01000113.1 = NZ_JJQI01000113.1 Primary Assembly 12027 na scaffold43_1_size25521-refined unplaced-scaffold na na JJQI01000114.1 = NZ_JJQI01000114.1 Primary Assembly 25521 na scaffold16_1_size106177-refined unplaced-scaffold na na JJQI01000115.1 = NZ_JJQI01000115.1 Primary Assembly 105907 na scaffold93_1_size4063-refined unplaced-scaffold na na JJQI01000116.1 = NZ_JJQI01000116.1 Primary Assembly 4063 na scaffold22_1_size59151-refined unplaced-scaffold na na JJQI01000117.1 = NZ_JJQI01000117.1 Primary Assembly 59151 na scaffold3_1_size172003-refined unplaced-scaffold na na JJQI01000118.1 = NZ_JJQI01000118.1 Primary Assembly 171462 na scaffold14_1_size63835-refined unplaced-scaffold na na JJQI01000119.1 = NZ_JJQI01000119.1 Primary Assembly 63915 na scaffold33_1_size31033-refined unplaced-scaffold na na JJQI01000120.1 = NZ_JJQI01000120.1 Primary Assembly 30804 na scaffold73_1_size10551-refined unplaced-scaffold na na JJQI01000121.1 = NZ_JJQI01000121.1 Primary Assembly 10551 na scaffold47_1_size34537-refined unplaced-scaffold na na JJQI01000122.1 = NZ_JJQI01000122.1 Primary Assembly 34237 na scaffold120_1_size1279-refined unplaced-scaffold na na JJQI01000123.1 = NZ_JJQI01000123.1 Primary Assembly 1279 na