# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.H.T.1A.1 # Taxid: 2209 # BioSample: SAMN02708955 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPY01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.1x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979815.1 # RefSeq assembly accession: GCF_000979815.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979835.1 GCF_000979835.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold106_1_size4088-refined unplaced-scaffold na na JJPY01000001.1 = NZ_JJPY01000001.1 Primary Assembly 3988 na scaffold72_1_size17074-refined unplaced-scaffold na na JJPY01000002.1 = NZ_JJPY01000002.1 Primary Assembly 16897 na scaffold96_1_size5989-refined unplaced-scaffold na na JJPY01000003.1 = NZ_JJPY01000003.1 Primary Assembly 5989 na scaffold91_1_size6732-refined unplaced-scaffold na na JJPY01000004.1 = NZ_JJPY01000004.1 Primary Assembly 6732 na scaffold108_1_size3612-refined unplaced-scaffold na na JJPY01000005.1 = NZ_JJPY01000005.1 Primary Assembly 3512 na scaffold25_1_size81367-refined unplaced-scaffold na na JJPY01000006.1 = NZ_JJPY01000006.1 Primary Assembly 79638 na scaffold107_1_size3621-refined unplaced-scaffold na na JJPY01000007.1 = NZ_JJPY01000007.1 Primary Assembly 3621 na scaffold18_1_size57301-refined unplaced-scaffold na na JJPY01000008.1 = NZ_JJPY01000008.1 Primary Assembly 56639 na scaffold56_1_size34940-refined unplaced-scaffold na na JJPY01000009.1 = NZ_JJPY01000009.1 Primary Assembly 34925 na scaffold65_1_size21229-refined unplaced-scaffold na na JJPY01000010.1 = NZ_JJPY01000010.1 Primary Assembly 21202 na scaffold6_1_size79234-refined unplaced-scaffold na na JJPY01000011.1 = NZ_JJPY01000011.1 Primary Assembly 79036 na scaffold119_1_size1563-refined unplaced-scaffold na na JJPY01000012.1 = NZ_JJPY01000012.1 Primary Assembly 1563 na scaffold102_1_size4708-refined unplaced-scaffold na na JJPY01000013.1 = NZ_JJPY01000013.1 Primary Assembly 4668 na scaffold68_1_size18075-refined unplaced-scaffold na na JJPY01000014.1 = NZ_JJPY01000014.1 Primary Assembly 18075 na scaffold38_1_size37643-refined unplaced-scaffold na na JJPY01000015.1 = NZ_JJPY01000015.1 Primary Assembly 37643 na scaffold1_1_size120971-refined unplaced-scaffold na na JJPY01000016.1 = NZ_JJPY01000016.1 Primary Assembly 120501 na scaffold86_1_size11915-refined unplaced-scaffold na na JJPY01000017.1 = NZ_JJPY01000017.1 Primary Assembly 11892 na scaffold92_1_size6644-refined unplaced-scaffold na na JJPY01000018.1 = NZ_JJPY01000018.1 Primary Assembly 6644 na scaffold35_1_size42175-refined unplaced-scaffold na na JJPY01000019.1 = NZ_JJPY01000019.1 Primary Assembly 42175 na scaffold122_1_size1210-refined unplaced-scaffold na na JJPY01000020.1 = NZ_JJPY01000020.1 Primary Assembly 1059 na scaffold73_1_size16935-refined unplaced-scaffold na na JJPY01000021.1 = NZ_JJPY01000021.1 Primary Assembly 16787 na scaffold19_1_size56644-refined unplaced-scaffold na na JJPY01000022.1 = NZ_JJPY01000022.1 Primary Assembly 56564 na scaffold81_1_size11856-refined unplaced-scaffold na na JJPY01000023.1 = NZ_JJPY01000023.1 Primary Assembly 11856 na scaffold88_1_size8151-refined unplaced-scaffold na na JJPY01000024.1 = NZ_JJPY01000024.1 Primary Assembly 8151 na scaffold60_1_size25011-refined unplaced-scaffold na na JJPY01000025.1 = NZ_JJPY01000025.1 Primary Assembly 25011 na scaffold90_1_size7666-refined unplaced-scaffold na na JJPY01000026.1 = NZ_JJPY01000026.1 Primary Assembly 7689 na scaffold71_1_size17109-refined unplaced-scaffold na na JJPY01000027.1 = NZ_JJPY01000027.1 Primary Assembly 17109 na scaffold66_1_size34902-refined unplaced-scaffold na na JJPY01000028.1 = NZ_JJPY01000028.1 Primary Assembly 20783 na scaffold7_1_size85985-refined unplaced-scaffold na na JJPY01000029.1 = NZ_JJPY01000029.1 Primary Assembly 85398 na scaffold78_1_size12764-refined unplaced-scaffold na na JJPY01000030.1 = NZ_JJPY01000030.1 Primary Assembly 12764 na scaffold51_1_size29869-refined unplaced-scaffold na na JJPY01000031.1 = NZ_JJPY01000031.1 Primary Assembly 29869 na scaffold9_1_size74977-refined unplaced-scaffold na na JJPY01000032.1 = NZ_JJPY01000032.1 Primary Assembly 74877 na scaffold77_1_size13345-refined unplaced-scaffold na na JJPY01000033.1 = NZ_JJPY01000033.1 Primary Assembly 13321 na scaffold3_1_size83023-refined unplaced-scaffold na na JJPY01000034.1 = NZ_JJPY01000034.1 Primary Assembly 82818 na scaffold112_1_size3152-refined unplaced-scaffold na na JJPY01000035.1 = NZ_JJPY01000035.1 Primary Assembly 3152 na scaffold44_1_size33831-refined unplaced-scaffold na na JJPY01000036.1 = NZ_JJPY01000036.1 Primary Assembly 33831 na scaffold97_1_size5642-refined unplaced-scaffold na na JJPY01000037.1 = NZ_JJPY01000037.1 Primary Assembly 5642 na scaffold109_1_size3602-refined unplaced-scaffold na na JJPY01000038.1 = NZ_JJPY01000038.1 Primary Assembly 3602 na scaffold67_1_size18414-refined unplaced-scaffold na na JJPY01000039.1 = NZ_JJPY01000039.1 Primary Assembly 18414 na scaffold48_1_size30679-refined unplaced-scaffold na na JJPY01000040.1 = NZ_JJPY01000040.1 Primary Assembly 30616 na scaffold45_1_size33682-refined unplaced-scaffold na na JJPY01000041.1 = NZ_JJPY01000041.1 Primary Assembly 33682 na scaffold28_1_size74525-refined unplaced-scaffold na na JJPY01000042.1 = NZ_JJPY01000042.1 Primary Assembly 73742 na scaffold30_1_size45693-refined unplaced-scaffold na na JJPY01000043.1 = NZ_JJPY01000043.1 Primary Assembly 45693 na scaffold49_1_size30366-refined unplaced-scaffold na na JJPY01000044.1 = NZ_JJPY01000044.1 Primary Assembly 30366 na scaffold10_1_size69114-refined unplaced-scaffold na na JJPY01000045.1 = NZ_JJPY01000045.1 Primary Assembly 69114 na scaffold93_1_size6629-refined unplaced-scaffold na na JJPY01000046.1 = NZ_JJPY01000046.1 Primary Assembly 6629 na scaffold123_1_size1096-refined unplaced-scaffold na na JJPY01000047.1 = NZ_JJPY01000047.1 Primary Assembly 1096 na scaffold5_1_size156150-refined unplaced-scaffold na na JJPY01000048.1 = NZ_JJPY01000048.1 Primary Assembly 155565 na scaffold124_1_size1867-refined unplaced-scaffold na na JJPY01000049.1 = NZ_JJPY01000049.1 Primary Assembly 782 na scaffold87_1_size8499-refined unplaced-scaffold na na JJPY01000050.1 = NZ_JJPY01000050.1 Primary Assembly 8399 na scaffold52_1_size28620-refined unplaced-scaffold na na JJPY01000051.1 = NZ_JJPY01000051.1 Primary Assembly 28620 na scaffold83_1_size18784-refined unplaced-scaffold na na JJPY01000052.1 = NZ_JJPY01000052.1 Primary Assembly 18425 na scaffold31_1_size44186-refined unplaced-scaffold na na JJPY01000053.1 = NZ_JJPY01000053.1 Primary Assembly 40775 na scaffold62_1_size22468-refined unplaced-scaffold na na JJPY01000054.1 = NZ_JJPY01000054.1 Primary Assembly 22468 na scaffold105_1_size4312-refined unplaced-scaffold na na JJPY01000055.1 = NZ_JJPY01000055.1 Primary Assembly 4312 na scaffold27_1_size52432-refined unplaced-scaffold na na JJPY01000056.1 = NZ_JJPY01000056.1 Primary Assembly 51957 na scaffold11_1_size68434-refined unplaced-scaffold na na JJPY01000057.1 = NZ_JJPY01000057.1 Primary Assembly 68292 na scaffold22_1_size53111-refined unplaced-scaffold na na JJPY01000058.1 = NZ_JJPY01000058.1 Primary Assembly 53014 na scaffold40_1_size36416-refined unplaced-scaffold na na JJPY01000059.1 = NZ_JJPY01000059.1 Primary Assembly 36307 na scaffold118_1_size1729-refined unplaced-scaffold na na JJPY01000060.1 = NZ_JJPY01000060.1 Primary Assembly 1729 na scaffold14_1_size61693-refined unplaced-scaffold na na JJPY01000061.1 = NZ_JJPY01000061.1 Primary Assembly 61593 na scaffold98_1_size5427-refined unplaced-scaffold na na JJPY01000062.1 = NZ_JJPY01000062.1 Primary Assembly 5427 na scaffold82_1_size20818-refined unplaced-scaffold na na JJPY01000063.1 = NZ_JJPY01000063.1 Primary Assembly 20900 na scaffold8_1_size163049-refined unplaced-scaffold na na JJPY01000064.1 = NZ_JJPY01000064.1 Primary Assembly 162572 na scaffold55_1_size27758-refined unplaced-scaffold na na JJPY01000065.1 = NZ_JJPY01000065.1 Primary Assembly 27658 na scaffold115_1_size2655-refined unplaced-scaffold na na JJPY01000066.1 = NZ_JJPY01000066.1 Primary Assembly 2655 na scaffold43_1_size35592-refined unplaced-scaffold na na JJPY01000067.1 = NZ_JJPY01000067.1 Primary Assembly 35508 na scaffold29_1_size68459-refined unplaced-scaffold na na JJPY01000068.1 = NZ_JJPY01000068.1 Primary Assembly 68360 na scaffold103_1_size4669-refined unplaced-scaffold na na JJPY01000069.1 = NZ_JJPY01000069.1 Primary Assembly 4669 na scaffold95_1_size6210-refined unplaced-scaffold na na JJPY01000070.1 = NZ_JJPY01000070.1 Primary Assembly 6110 na scaffold70_1_size17603-refined unplaced-scaffold na na JJPY01000071.1 = NZ_JJPY01000071.1 Primary Assembly 17603 na scaffold36_1_size40675-refined unplaced-scaffold na na JJPY01000072.1 = NZ_JJPY01000072.1 Primary Assembly 40675 na scaffold58_1_size26521-refined unplaced-scaffold na na JJPY01000073.1 = NZ_JJPY01000073.1 Primary Assembly 26388 na scaffold69_1_size17659-refined unplaced-scaffold na na JJPY01000074.1 = NZ_JJPY01000074.1 Primary Assembly 17561 na scaffold53_1_size28092-refined unplaced-scaffold na na JJPY01000075.1 = NZ_JJPY01000075.1 Primary Assembly 28092 na scaffold54_1_size27789-refined unplaced-scaffold na na JJPY01000076.1 = NZ_JJPY01000076.1 Primary Assembly 27789 na scaffold32_1_size44107-refined unplaced-scaffold na na JJPY01000077.1 = NZ_JJPY01000077.1 Primary Assembly 44107 na scaffold34_1_size42647-refined unplaced-scaffold na na JJPY01000078.1 = NZ_JJPY01000078.1 Primary Assembly 42647 na scaffold125_1_size574-refined unplaced-scaffold na na JJPY01000079.1 = NZ_JJPY01000079.1 Primary Assembly 574 na scaffold85_1_size8670-refined unplaced-scaffold na na JJPY01000080.1 = NZ_JJPY01000080.1 Primary Assembly 8670 na scaffold100_1_size4720-refined unplaced-scaffold na na JJPY01000081.1 = NZ_JJPY01000081.1 Primary Assembly 4720 na scaffold101_1_size4718-refined unplaced-scaffold na na JJPY01000082.1 = NZ_JJPY01000082.1 Primary Assembly 4621 na scaffold111_1_size3155-refined unplaced-scaffold na na JJPY01000083.1 = NZ_JJPY01000083.1 Primary Assembly 3155 na scaffold21_1_size53968-refined unplaced-scaffold na na JJPY01000084.1 = NZ_JJPY01000084.1 Primary Assembly 53968 na scaffold121_1_size1319-refined unplaced-scaffold na na JJPY01000085.1 = NZ_JJPY01000085.1 Primary Assembly 1319 na scaffold57_1_size26834-refined unplaced-scaffold na na JJPY01000086.1 = NZ_JJPY01000086.1 Primary Assembly 26834 na scaffold126_1_size573-refined unplaced-scaffold na na JJPY01000087.1 = NZ_JJPY01000087.1 Primary Assembly 573 na scaffold76_1_size14127-refined unplaced-scaffold na na JJPY01000088.1 = NZ_JJPY01000088.1 Primary Assembly 14127 na scaffold63_1_size22022-refined unplaced-scaffold na na JJPY01000089.1 = NZ_JJPY01000089.1 Primary Assembly 22022 na scaffold75_1_size14850-refined unplaced-scaffold na na JJPY01000090.1 = NZ_JJPY01000090.1 Primary Assembly 14850 na scaffold59_1_size28341-refined unplaced-scaffold na na JJPY01000091.1 = NZ_JJPY01000091.1 Primary Assembly 28047 na scaffold39_1_size36997-refined unplaced-scaffold na na JJPY01000092.1 = NZ_JJPY01000092.1 Primary Assembly 36925 na scaffold23_1_size83690-refined unplaced-scaffold na na JJPY01000093.1 = NZ_JJPY01000093.1 Primary Assembly 83615 na scaffold37_1_size37889-refined unplaced-scaffold na na JJPY01000094.1 = NZ_JJPY01000094.1 Primary Assembly 37839 na scaffold120_1_size1352-refined unplaced-scaffold na na JJPY01000095.1 = NZ_JJPY01000095.1 Primary Assembly 1352 na scaffold117_1_size1939-refined unplaced-scaffold na na JJPY01000096.1 = NZ_JJPY01000096.1 Primary Assembly 1939 na scaffold42_1_size35875-refined unplaced-scaffold na na JJPY01000097.1 = NZ_JJPY01000097.1 Primary Assembly 35875 na scaffold79_1_size12172-refined unplaced-scaffold na na JJPY01000098.1 = NZ_JJPY01000098.1 Primary Assembly 12172 na scaffold16_1_size58064-refined unplaced-scaffold na na JJPY01000099.1 = NZ_JJPY01000099.1 Primary Assembly 58064 na scaffold113_1_size3139-refined unplaced-scaffold na na JJPY01000100.1 = NZ_JJPY01000100.1 Primary Assembly 2977 na scaffold33_1_size96925-refined unplaced-scaffold na na JJPY01000101.1 = NZ_JJPY01000101.1 Primary Assembly 96825 na scaffold4_1_size81739-refined unplaced-scaffold na na JJPY01000102.1 = NZ_JJPY01000102.1 Primary Assembly 81456 na scaffold20_1_size54246-refined unplaced-scaffold na na JJPY01000103.1 = NZ_JJPY01000103.1 Primary Assembly 54246 na scaffold80_1_size11872-refined unplaced-scaffold na na JJPY01000104.1 = NZ_JJPY01000104.1 Primary Assembly 11872 na scaffold64_1_size21632-refined unplaced-scaffold na na JJPY01000105.1 = NZ_JJPY01000105.1 Primary Assembly 21632 na scaffold2_1_size212454-refined unplaced-scaffold na na JJPY01000106.1 = NZ_JJPY01000106.1 Primary Assembly 211658 na scaffold41_1_size43934-refined unplaced-scaffold na na JJPY01000107.1 = NZ_JJPY01000107.1 Primary Assembly 43376 na scaffold104_1_size4361-refined unplaced-scaffold na na JJPY01000108.1 = NZ_JJPY01000108.1 Primary Assembly 4361 na scaffold61_1_size31821-refined unplaced-scaffold na na JJPY01000109.1 = NZ_JJPY01000109.1 Primary Assembly 31821 na scaffold12_1_size114859-refined unplaced-scaffold na na JJPY01000110.1 = NZ_JJPY01000110.1 Primary Assembly 114747 na scaffold99_1_size5050-refined unplaced-scaffold na na JJPY01000111.1 = NZ_JJPY01000111.1 Primary Assembly 4952 na scaffold13_1_size63450-refined unplaced-scaffold na na JJPY01000112.1 = NZ_JJPY01000112.1 Primary Assembly 63477 na scaffold116_1_size2183-refined unplaced-scaffold na na JJPY01000113.1 = NZ_JJPY01000113.1 Primary Assembly 1988 na scaffold50_1_size42465-refined unplaced-scaffold na na JJPY01000114.1 = NZ_JJPY01000114.1 Primary Assembly 42245 na scaffold114_1_size3075-refined unplaced-scaffold na na JJPY01000115.1 = NZ_JJPY01000115.1 Primary Assembly 3075 na scaffold128_1_size526-refined unplaced-scaffold na na JJPY01000116.1 = NZ_JJPY01000116.1 Primary Assembly 526 na scaffold89_1_size7391-refined unplaced-scaffold na na JJPY01000117.1 = NZ_JJPY01000117.1 Primary Assembly 7391 na scaffold84_1_size9445-refined unplaced-scaffold na na JJPY01000118.1 = NZ_JJPY01000118.1 Primary Assembly 9445 na scaffold127_1_size536-refined unplaced-scaffold na na JJPY01000119.1 = NZ_JJPY01000119.1 Primary Assembly 536 na scaffold47_1_size32071-refined unplaced-scaffold na na JJPY01000120.1 = NZ_JJPY01000120.1 Primary Assembly 32071 na scaffold94_1_size6386-refined unplaced-scaffold na na JJPY01000121.1 = NZ_JJPY01000121.1 Primary Assembly 6386 na scaffold17_1_size57807-refined unplaced-scaffold na na JJPY01000122.1 = NZ_JJPY01000122.1 Primary Assembly 57707 na scaffold26_1_size50086-refined unplaced-scaffold na na JJPY01000123.1 = NZ_JJPY01000123.1 Primary Assembly 49986 na scaffold24_1_size52543-refined unplaced-scaffold na na JJPY01000124.1 = NZ_JJPY01000124.1 Primary Assembly 52504 na scaffold110_1_size3358-refined unplaced-scaffold na na JJPY01000125.1 = NZ_JJPY01000125.1 Primary Assembly 3358 na scaffold15_1_size58158-refined unplaced-scaffold na na JJPY01000126.1 = NZ_JJPY01000126.1 Primary Assembly 57988 na scaffold46_1_size33661-refined unplaced-scaffold na na JJPY01000127.1 = NZ_JJPY01000127.1 Primary Assembly 33661 na scaffold74_1_size15813-refined unplaced-scaffold na na JJPY01000128.1 = NZ_JJPY01000128.1 Primary Assembly 15813 na