#track meryIdeasSuper (ideas.ra)

track ideasJointMay2021Signal
superTrack on
shortLabel Epigenetic signals
longLabel Epigenetic signals
type bigWig 0 16
group vision
priority 2
html ideasJointMay2021Signal.html

track ideasJointMay2021Nbp
parent ideasJointMay2021Signal
shortLabel Signal p-value
longLabel FDR -log10(NB p-value) signal for joint segmentations
type bigWig 0 16
group vision
compositeTrack on
subGroup1 cell Cell ave=Average B=B CD34_E=CD34_E CLP=CLP CMP=CMP EOS=EOS ERY=ERY GMP=GMP HSC=HSC HUDEP1=HUDEP1 HUDEP2=HUDEP2 K562=K562 LMPP=LMPP MEP=MEP MK=MK MONc=MONc MONp=MONp MPP=MPP NEU=NEU NK=NK T_CD4=T_CD4 T_CD8=T_CD8
subGroup2 mark Feature ATAC=ATAC CTCF=CTCF H3K4me1=H3K4me1 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H3K27ac=H3K27ac H3K27me3=H3K27me3 H3K36me3=H3K36me3
dimensions dimX=mark dimY=cell
html ideasJointMay2021Nbp.html


track ideasJointMay2021Rc
parent ideasJointMay2021Signal
shortLabel Signal normalized counts
longLabel Normalized read counts for joint segmentations
type bigWig 0 100
group vision
compositeTrack on
subGroup1 cell Cell ave=Average B=B CD34_E=CD34_E CLP=CLP CMP=CMP EOS=EOS ERY=ERY GMP=GMP HSC=HSC HUDEP1=HUDEP1 HUDEP2=HUDEP2 K562=K562 LMPP=LMPP MEP=MEP MK=MK MONc=MONc MONp=MONp MPP=MPP NEU=NEU NK=NK T_CD4=T_CD4 T_CD8=T_CD8
subGroup2 mark Feature ATAC=ATAC CTCF=CTCF H3K4me1=H3K4me1 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H3K27ac=H3K27ac H3K27me3=H3K27me3 H3K36me3=H3K36me3
dimensions dimX=mark dimY=cell
html ideasJointMay2021Rc.html

track ideasJointMay2021States
superTrack on show
shortLabel Epigenetic states
longLabel Epigenetic states
type bigBed 9 .
itemRgb on
html meryHg38f8Js25BpSJ.html
group vison
priority 1

track meryHg38f8Js25BpSJ
parent ideasJointMay2021States
shortLabel IDEAS human-mouse
longLabel IDEAS human-mouse joint segmentation with 25 states from May 2021
type bigBed 9 .
itemRgb on 
group vision
compositeTrack on
html meryHg38f8Js25BpSJ.html
visibility dense
noScoreFilter on
priority 1

track meryHg38f8s29BpSJ
parent ideasJointMay2021States
shortLabel IDEAS human only
longLabel IDEAS human only segmentation with 29 states from May 2021
type bigBed 9 .
itemRgb on 
group vision
compositeTrack on
html meryHg38f8s29BpSJ.html
visibility hide
noScoreFilter on

track ideasJointcCRE
shortLabel Candidate CREs
longLabel Candidate CREs
superTrack on
type bigBed 9 .
group vision
priority 3

track ideasJointSept2021cCRE
shortLabel cCRE 
longLabel cCREs for Human-Mouse joint segmentation with 25 states 
parent ideasJointcCRE
type bigBed 9 .
itemRgb on
group vision
bigDataUrl ccreFunJmc.hg38.bb
visibility dense
noScoreFilter on
html ideasJointSept2021cCRE.html

track ideasJointMay2021Rp
shortLabel Epigenetic state Regulatory Potential
longLabel Epigenetic state Regulatory Potential
superTrack on
type bigWig
group vision
priority 4