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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010168 | AL122127 | 104291433 | 3 | chr14 | NT_010168 | AB019441 | 104461235 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AL122127 | 104291433 | 3 |   |   | X57331 | 103827172 | 3 | 19428 | 0 | 0 | 19428 |
| S/G/Y/R/B/O |
NT_010168 | AL122127 | 104291433 | 3 |   |   | X97051 | 103827172 | 3 | 39382 | 0 | 0 | 39382 |
| S/G/Y/R/B/O |
NT_010168 | AB019441 | 104461235 | 3 | chr14 | NT_010168 | AB019440 | 104584670 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019441 | 104461235 | 3 |   |   | M37277 | 103827172 | 3 | 14894 | 0 | 0 | 14894 |
| S/G/Y/R/B/O |
NT_010168 | AB019441 | 104461235 | 3 |   |   | X13972 | 103827172 | 3 | 14894 | 0 | 0 | 14894 |
| S/G/Y/R/B/O |
NT_010168 | AB019440 | 104584670 | 3 | chr14 | NT_010168 | AB019439 | 104784670 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019439 | 104784670 | 3 | chr14 | NT_010168 | AB019438 | 104984670 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019439 | 104784670 | 3 | chr8 | NT_033194 | AC087793 | 146787617 | 1 | 24030 | 0 | 940 | 24970 |
| S/G/Y/R/B/O |
NT_010168 | AB019438 | 104984670 | 3 | chr14 | NT_010168 | AB019437 | 105184670 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019438 | 104984670 | 3 | chr14 | NT_010168 | AC013778 | 105384770 | 1 | 93415 | 6308 | 2354 | 102077 |
| S/G/Y/R/B/O |
NT_010168 | AB019437 | 105184670 | 3 | chr14 | NT_010168 | AC013778 | 105384770 | 1 | 34738 | 8129 | 11268 | 54135 |
| S/G/Y/R/B/O |
NT_010168 | AC013778 | 105384770 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010168 | AC013778 | 105384770 | 1 | chr14 | NT_010168 | AB019438 | 104984670 | 3 | 93415 | 6308 | 2354 | 102077 |
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