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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011753 | AC004673 | 21637344 | 3 | chrX | NT_011753 | AC073910 | 21873625 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011753 | AC004673 | 21637344 | 3 | chr7 | NT_029999 | AC083833 | 105135792 | 1 | 14152 | 5363 | 27650 | 47165 |
| S/G/Y/R/B/O |
NT_011753 | AC073910 | 21873625 | 3 | chrX | NT_011753 | AC096507 | 22018789 | 3 | 2274 | 0 | 0 | 2274 |
| S/G/Y/R/B/O |
NT_011753 | AC096507 | 22018789 | 3 | chrX | NT_011753 | AC093011 | 22119015 | 1 | 26823 | 0 | 0 | 26823 |
| S/G/Y/R/B/O |
NT_011753 | AC096507 | 22018789 | 3 | chrX | NT_011753 | AC040895 | 22378140 | 1 | 26778 | 0 | 0 | 26778 |
| S/G/Y/R/B/O |
NT_011753 | AC093011 | 22119015 | 1 | chrX | NT_011753 | AC005867 | 22244463 | 1 | 44010 | 823 | 0 | 44833 |
| S/G/Y/R/B/O |
NT_011753 | AC093011 | 22119015 | 1 | chrX | NT_011753 | AC040895 | 22378140 | 1 | 171489 | 0 | 1359 | 172848 |
| S/G/Y/R/B/O |
NT_011753 | AC005867 | 22244463 | 1 | chrX | NT_011753 | AC040895 | 22378140 | 1 | 51766 | 829 | 0 | 52595 |
| S/G/Y/R/B/O |
NT_011753 | AC005867 | 22244463 | 1 |   |   | U40369 | 22119015 | 3 | 11084 | 0 | 0 | 11084 |
| S/G/Y/R/B/O |
NT_011753 | AC040895 | 22378140 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011753 | AC040895 | 22378140 | 1 | chrX | NT_011753 | AC093011 | 22119015 | 1 | 171489 | 0 | 1359 | 172848 |
| S/G/Y/R/B/O |
NT_011753 | AC040895 | 22378140 | 1 | chrX | NT_011753 | AC096507 | 22018789 | 3 | 26778 | 0 | 0 | 26778 |
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