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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030191 | AC004470 | 21098310 | 3 | chrX | NT_030191 | AC108686 | 21306267 | 3 | 31735 | 0 | 0 | 31735 |
| S/G/Y/R/B/O |
NT_030191 | AC004470 | 21098310 | 3 | chr7 | NT_029999 | AC083833 | 105135792 | 1 | 16512 | 0 | 0 | 16512 |
| S/G/Y/R/B/O |
NT_030191 | AC108686 | 21306267 | 3 | chrX | NT_030191 | AC092832 | 21431599 | 1 | 49475 | 0 | 0 | 49475 |
| S/G/Y/R/B/O |
NT_030191 | AC092832 | 21431599 | 1 | chrX | NT_030191 | AC031985 | 21578507 | 1 | 84603 | 13798 | 1459 | 99860 |
| S/G/Y/R/B/O |
NT_030191 | AC031985 | 21578507 | 1 |   |   |   |   |   |   |   |   |   |
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