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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033338 | AC027450 | 12614307 | 1 | chrX | NT_033338 | AC003668 | 12765861 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033338 | AC027450 | 12614307 | 1 | chr9 | NT_023935 | AL445684 | 70160576 | 3 | 43217 | 2250 | 7979 | 53446 |
| S/G/Y/R/B/O |
NT_033338 | AC027450 | 12614307 | 1 | chr9 | NT_023935 | AL592221 | 70298667 | 3 | 84387 | 0 | 13667 | 98054 |
| S/G/Y/R/B/O |
NT_033338 | AC027450 | 12614307 | 1 |   |   | AL357494 | 12218013 | 1 | 10541 | 2230 | 0 | 12771 |
| S/G/Y/R/B/O |
NT_033338 | AC003668 | 12765861 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033338 | AC003668 | 12765861 | 3 | chr9 | NT_023935 | AL592047 | 70451494 | 3 | 71076 | 0 | 0 | 71076 |
| S/G/Y/R/B/O |
NT_033338 | AC003668 | 12765861 | 3 | chr9 | NT_023935 | AL592221 | 70298667 | 3 | 76264 | 0 | 0 | 76264 |
| S/G/Y/R/B/O |
NT_033338 | AC003668 | 12765861 | 3 |   |   | AL353690 | 70298667 | 1 | 46153 | 0 | 0 | 46153 |
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