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  Chromosome Y - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly


  NT_011875
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_011875AC011293131093323chrYNT_011875AC0125021326885430000
S/G/Y/R/B/O NT_011875AC012502132688543chrYNT_011875AC01130213382453300200200
S/G/Y/R/B/O NT_011875AC012502132688543  AC011307133824531708270070827
S/G/Y/R/B/O NT_011875AC011302133824533chrYNT_011875AC01373513560390300200200
S/G/Y/R/B/O NT_011875AC013735135603903chrYNT_011875AC004772136393413400190040019
S/G/Y/R/B/O NT_011875AC004772136393413chrYNT_011875AC0059421371232032000002000
S/G/Y/R/B/O NT_011875AC004772136393413  AC0799921356039012770202659754299
S/G/Y/R/B/O NT_011875AC005942137123203chrYNT_011875AC0029921373677832000002000
S/G/Y/R/B/O NT_011875AC002992137367783chrYNT_011875AC004617138896263292020029202
S/G/Y/R/B/O NT_011875AC002992137367783  AC0799921371232013652841512272763406
S/G/Y/R/B/O NT_011875AC002992137367783  AC108717137123201184730018473
S/G/Y/R/B/O NT_011875AC004617138896263chrYNT_011875AC0048101403564730199301993
S/G/Y/R/B/O NT_011875AC004617138896263  AC108717140356471486590048659
S/G/Y/R/B/O NT_011875AC004810140356473chrYNT_011875AC0025311412014532000002000
S/G/Y/R/B/O NT_011875AC002531141201453chrYNT_011875AC004474143160453441940044194
S/G/Y/R/B/O NT_011875AC004474143160453chrYNT_011875AC0065651442013130000
S/G/Y/R/B/O NT_011875AC006565144201313chrYNT_011875AC0058201446501038000008000
S/G/Y/R/B/O NT_011875AC005820144650103chrYNT_011875AC010877146239193648140064814
S/G/Y/R/B/O NT_011875AC005820144650103  AC09933314623919315118200151182
S/G/Y/R/B/O NT_011875AC010877146239193chrYNT_011875AC00637614760948300200200
S/G/Y/R/B/O NT_011875AC010877146239193  AC099333147609483943620094362
S/G/Y/R/B/O NT_011875AC006376147609483chrYNT_011875AC00700414932755300200200
S/G/Y/R/B/O NT_011875AC007004149327553chrYNT_011875AC0063831496851530000
S/G/Y/R/B/O NT_011875AC007004149327553  AC083941147609481280070028007
S/G/Y/R/B/O NT_011875AC006383149685153chrYNT_011875AC0063711507352530000
S/G/Y/R/B/O NT_011875AC006383149685153  AC083941147609481744042736968886828
S/G/Y/R/B/O NT_011875AC006371150735253chrYNT_011875AC00637015275679300200200
S/G/Y/R/B/O NT_011875AC006371150735253  AC083941152756791261482379028527
S/G/Y/R/B/O NT_011875AC006370152756793chrYNT_011875AC01867715448625300200200
S/G/Y/R/B/O NT_011875AC018677154486253chrYNT_011875AC01072015551533300200200
S/G/Y/R/B/O NT_011875AC010720155515333chrYNT_011875AC01072315588277300200200
S/G/Y/R/B/O NT_011875AC010723155882773chrYNT_011875AC01919115762497300200200
S/G/Y/R/B/O NT_011875AC010723155882773  AC0840111576249715545566531691579023
S/G/Y/R/B/O NT_011875AC019191157624973chrYNT_011875AC0107261579064130000
S/G/Y/R/B/O NT_011875AC010726157906413chrYNT_011875AC01097915966965300200200
S/G/Y/R/B/O NT_011875AC010726157906413  AC0840111596696514291750811239260390
S/G/Y/R/B/O NT_011875AC010979159669653chrYNT_011875AC01087916076159300200200
S/G/Y/R/B/O NT_011875AC010879160761593chrYNT_011875AC0170321625788030000
S/G/Y/R/B/O NT_011875AC010879160761593chr3NT_005769AC06943272752975190636196910201102806
S/G/Y/R/B/O NT_011875AC010879160761593  AC01190315966965112822700128227
S/G/Y/R/B/O NT_011875AC017032162578803chrYNT_011875AC00698916302803300200200
S/G/Y/R/B/O NT_011875AC006989163028033chrYNT_011875AC01128916460269300200200
S/G/Y/R/B/O NT_011875AC011289164602693chrYNT_011875AC01097216540606300200200
S/G/Y/R/B/O NT_011875AC011289164602693  AC084691165406061122660012266
S/G/Y/R/B/O NT_011875AC010972165406063chrYNT_011875AC0070071665504330000
S/G/Y/R/B/O NT_011875AC010972165406063  AC023854164602691703854131859983115
S/G/Y/R/B/O NT_011875AC010972165406063  AC0846911646026919521358837626108722
S/G/Y/R/B/O NT_011875AC007007166550433chrYNT_011875AC0069981671266230000
S/G/Y/R/B/O NT_011875AC007007166550433  AC023854164602691393735262404648681
S/G/Y/R/B/O NT_011875AC007007166550433  AC084369164602691134162193015609
S/G/Y/R/B/O NT_011875AC007007166550433  AC08469116460269125932039026322
S/G/Y/R/B/O NT_011875AC006998167126623chrYNT_011875AC0063821685672230000
S/G/Y/R/B/O NT_011875AC006998167126623  AC023854164602691267552932254132228
S/G/Y/R/B/O NT_011875AC006998167126623  AC08436916460269111961172406348133199
S/G/Y/R/B/O NT_011875AC006382168567223chrYNT_011875AC00646217019332300200200
S/G/Y/R/B/O NT_011875AC006382168567223  AC084792170193321258531982125629091
S/G/Y/R/B/O NT_011875AC006462170193323chrYNT_011875AC00633617159126300200200
S/G/Y/R/B/O NT_011875AC006462170193323  AC08479216856722174276922728461111964
S/G/Y/R/B/O NT_011875AC006336171591263chrYNT_011875AC0166711725488230000
S/G/Y/R/B/O NT_011875AC006336171591263  AC0847921701933211315534311193328519
S/G/Y/R/B/O NT_011875AC006336171591263  AL1359001701933211037812095022473
S/G/Y/R/B/O NT_011875AC016671172548823chrYNT_011875AC01702017274119300200200
S/G/Y/R/B/O NT_011875AC017020172741193chrYNT_011875AC0117491744032230000
S/G/Y/R/B/O NT_011875AC017020172741193  AC0101311727411911687506185678731
S/G/Y/R/B/O NT_011875AC017020172741193  AC080189172548821682020474772949
S/G/Y/R/B/O NT_011875AC011749174403223chrYNT_011875AC05351617645175300200200
S/G/Y/R/B/O NT_011875AC011749174403223  AC010131172548821789820078982
S/G/Y/R/B/O NT_011875AC011749174403223  AC0801891764517512100005205973059
S/G/Y/R/B/O NT_011875AC053516176451753chrYNT_011875AC01013517672289300200200
S/G/Y/R/B/O NT_011875AC010135176722893chrYNT_011875AC01012817849040300200200
S/G/Y/R/B/O NT_011875AC010128178490403chrYNT_011875AC01175117911626300200200
S/G/Y/R/B/O NT_011875AC011751179116263chrYNT_011875AC01667818091141300200200
S/G/Y/R/B/O NT_011875AC016678180911413chrYNT_011875AC01597918233923300200200
S/G/Y/R/B/O NT_011875AC016678180911413  AC084870182339231110431393022420136781
S/G/Y/R/B/O NT_011875AC015979182339233chrYNT_011875AC00703418255935300200200
S/G/Y/R/B/O NT_011875AC007034182559353chrYNT_011875AC00704318404933300200200
S/G/Y/R/B/O NT_011875AC007034182559353  AC0838321823392316799940862602198106
S/G/Y/R/B/O NT_011875AC007043184049333chrYNT_011875AC00699918512135300200200
S/G/Y/R/B/O NT_011875AC007043184049333  AC083832182559351573924029443965860
S/G/Y/R/B/O NT_011875AC006999185121353chrYNT_011875AC00704218624813300200200
S/G/Y/R/B/O NT_011875AC007042186248133chrYNT_011875AC09132918631520300200200
S/G/Y/R/B/O NT_011875AC091329186315203chrYNT_011875AC00797218668765300200200
S/G/Y/R/B/O NT_011875AC007972186687653chrYNT_011875AC0159781879685430000
S/G/Y/R/B/O NT_011875AC007972186687653  AC09089818668765112154332232088866265
S/G/Y/R/B/O NT_011875AC015978187968543chrYNT_011875AC0687041897543430000
S/G/Y/R/B/O NT_011875AC015978187968543chrYNT_011875AC00724119607293310561600105616
S/G/Y/R/B/O NT_011875AC015978187968543  AC064823196072931671120067112
S/G/Y/R/B/O NT_011875AC068704189754343chrYNT_011875AC0077421899023630000
S/G/Y/R/B/O NT_011875AC068704189754343chrYNT_011875AC007241196072933149980014998
S/G/Y/R/B/O NT_011875AC068704189754343  AC064823196072931149980014998
S/G/Y/R/B/O NT_011875AC007742189902363chrYNT_011875AC0953811918921030000
S/G/Y/R/B/O NT_011875AC007742189902363chrYNT_011875AC007241196072933416220041622
S/G/Y/R/B/O NT_011875AC007742189902363chrYNT_011875AC02418319443804315752300157523
S/G/Y/R/B/O NT_011875AC007742189902363  AC02284819607293181004170820496103208
S/G/Y/R/B/O NT_011875AC007742189902363  AC064823194438041933800093380
S/G/Y/R/B/O NT_011875AC095381191892103chrYNT_011875AC0099761921952130000
S/G/Y/R/B/O NT_011875AC095381191892103chrYNT_011875AC095380193985753245630024563
S/G/Y/R/B/O NT_011875AC009976192195213chrYNT_011875AC095380193985753210610021061
S/G/Y/R/B/O NT_011875AC095380193985753chrYNT_011875AC0241831944380430000
S/G/Y/R/B/O NT_011875AC095380193985753chrYNT_011875AC095381191892103245630024563
S/G/Y/R/B/O NT_011875AC024183194438043chrYNT_011875AC0072411960729330000
S/G/Y/R/B/O NT_011875AC024183194438043chrYNT_011875AC00774218990236315752300157523
S/G/Y/R/B/O NT_011875AC024183194438043  AC022848189902361140162170820496162366
S/G/Y/R/B/O NT_011875AC024183194438043  AC064823189902361517800051780
S/G/Y/R/B/O NT_011875AC007241196072933chrYNT_011875AC0691301976896130000
S/G/Y/R/B/O NT_011875AC007241196072933chrYNT_011875AC007742189902363416220041622
S/G/Y/R/B/O NT_011875AC007241196072933chrYNT_011875AC01597818796854310561600105616
S/G/Y/R/B/O NT_011875AC007241196072933chrYNT_011875AC068704189754343149980014998
S/G/Y/R/B/O NT_011875AC007241196072933  AC06482318796854112335500123355
S/G/Y/R/B/O NT_011875AC069130197689613chrYNT_011875AC0739621983563530000
S/G/Y/R/B/O NT_011875AC073962198356353chrYNT_011875AC0685411984214930000
S/G/Y/R/B/O NT_011875AC068541198421493chrYNT_011875AC02248619879515300200200
S/G/Y/R/B/O NT_011875AC068541198421493chrYNT_011875AC007379200356723359060035906
S/G/Y/R/B/O NT_011875AC022486198795153chrYNT_011875AC0073792003567230000
S/G/Y/R/B/O NT_011875AC022486198795153  AC084354198421491760481589323560115501
S/G/Y/R/B/O NT_011875AC007379200356723chrYNT_011875AC00923520209554300200200
S/G/Y/R/B/O NT_011875AC007379200356723chrYNT_011875AC068541198421493359060035906
S/G/Y/R/B/O NT_011875AC007379200356723  AC08435419842149157753112932477193817
S/G/Y/R/B/O NT_011875AC009235202095543chrYNT_011875AC00724420369264300200200
S/G/Y/R/B/O NT_011875AC009235202095543  AC09149719835635114236259053175571896
S/G/Y/R/B/O NT_011875AC007244203692643chrYNT_011875AC0212102055404130000
S/G/Y/R/B/O NT_011875AC021210205540413chrYNT_011875AC01013320617300300200200
S/G/Y/R/B/O NT_011875AC010133206173003chrYNT_011875AC01206220769174300200200
S/G/Y/R/B/O NT_011875AC012062207691743chrYNT_011875AC01013720811369300200200
S/G/Y/R/B/O NT_011875AC010137208113693chrYNT_011875AC0099772093487030000
S/G/Y/R/B/O NT_011875AC010137208113693  AC003032208113693270370027037
S/G/Y/R/B/O NT_011875AC009977209348703chrYNT_011875AC0108892096634130000
S/G/Y/R/B/O NT_011875AC009977209348703  AC003095207691742103570010357
S/G/Y/R/B/O NT_011875AC009977209348703  AC003097207691742316610031661
S/G/Y/R/B/O NT_011875AC010889209663413chrYNT_011875AC0101512114626530000
S/G/Y/R/B/O NT_011875AC010889209663413  AC003031207691743453890045389
S/G/Y/R/B/O NT_011875AC010889209663413  AC003094207691742379430037943
S/G/Y/R/B/O NT_011875AC010889209663413  AC003095207691742322080032208
S/G/Y/R/B/O NT_011875AC010889209663413  AC0361352076917415625521741892677355
S/G/Y/R/B/O NT_011875AC010889209663413  AF273841207691743757570075757
S/G/Y/R/B/O NT_011875AC010151211462653chrYNT_011875AC0092332121788630000
S/G/Y/R/B/O NT_011875AC010151211462653  AC036135207691741377880037788
S/G/Y/R/B/O NT_011875AC009233212178863chrYNT_011875AC0791572141312530000
S/G/Y/R/B/O NT_011875AC009233212178863  AC055746207691741119424920645746174376
S/G/Y/R/B/O NT_011875AC009233212178863  AC073123207691741594660059466
S/G/Y/R/B/O NT_011875AC079157214131253chrYNT_011875AC0792612152415930000
S/G/Y/R/B/O NT_011875AC079157214131253  AC073123207691741109900160712597
S/G/Y/R/B/O NT_011875AC079261215241593chrYNT_011875AC0791562157436930000
S/G/Y/R/B/O NT_011875AC079156215743693chrYNT_011875AC0242502159175430000
S/G/Y/R/B/O NT_011875AC024250215917543chrYNT_011875AC0092402163527730000
S/G/Y/R/B/O NT_011875AC009240216352773chrYNT_011875AC01174521736367300200200
S/G/Y/R/B/O NT_011875AC011745217363673chrYNT_011875AC00767821885692300200200
S/G/Y/R/B/O NT_011875AC007678218856923chrYNT_011875AC00949421994665300200200
S/G/Y/R/B/O NT_011875AC009494219946653chrYNT_011875AC0260612218277930000
S/G/Y/R/B/O NT_011875AC026061221827793chrYNT_011875AC0094892220212130000
S/G/Y/R/B/O NT_011875AC009489222021213chrYNT_011875AC00787622302874300200200
S/G/Y/R/B/O NT_011875AC009489222021213  AC0361282230287415210801035462462
S/G/Y/R/B/O NT_011875AC007876223028743chrYNT_011875AC00923922467553300200200
S/G/Y/R/B/O NT_011875AC007876223028743  AC036128222021211658848273240176558
S/G/Y/R/B/O NT_011875AC009239224675533chrYNT_011875AC0100862260372430000
S/G/Y/R/B/O NT_011875AC009239224675533  AC080161223028741115864211112077130052
S/G/Y/R/B/O NT_011875AC010086226037243chrYNT_011875AC0101412277445930000
S/G/Y/R/B/O NT_011875AC010086226037243  AC00950422302874112853800128538
S/G/Y/R/B/O NT_011875AC010086226037243  AC084012223028741965461269517456126697
S/G/Y/R/B/O NT_011875AC010141227744593chrYNT_011875AC02110722895517300200200
S/G/Y/R/B/O NT_011875AC010141227744593  AC007315223028741248170024817
S/G/Y/R/B/O NT_011875AC010141227744593  AC008061223028741432660043266
S/G/Y/R/B/O NT_011875AC010141227744593  AC009504223028741735350073535
S/G/Y/R/B/O NT_011875AC010141227744593  AC0238832289551713394101748451425
S/G/Y/R/B/O NT_011875AC021107228955173         
S/G/Y/R/B/O NT_011875AC021107228955173  AC02388322774459111537800115378