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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr22 | NT_011516 | AP000523 | 13037694 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr14 | NT_010164 | AL589743 | 17105361 | 3 | 33729 | 0 | 0 | 33729 |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr14 | NT_010164 | AL603712 | 17000001 | 2 | 28521 | 0 | 0 | 28521 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr22 | NT_011516 | AP000524 | 13076728 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 20409 | 0 | 0 | 20409 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr14 | NT_010164 | AL589743 | 17105361 | 3 | 40549 | 0 | 0 | 40549 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 |   |   | AC080181 | 17000001 | 1 | 10319 | 0 | 6110 | 16429 |
| S/G/Y/R/B/O |
NT_011516 | AP000524 | 13076728 | 3 | chr22 | NT_011516 | AP000525 | 13080710 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 | chr22 | NT_011516 | AP000526 | 13119166 | 3 | 22649 | 0 | 0 | 22649 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 38989 | 0 | 0 | 38989 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 | chr14 | NT_010164 | AL589743 | 17105361 | 3 | 39063 | 0 | 0 | 39063 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 |   |   | AC080181 | 17105361 | 1 | 24730 | 0 | 0 | 24730 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr22 | NT_011516 | AP000527 | 13133402 | 3 | 7205 | 0 | 0 | 7205 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 36706 | 0 | 0 | 36706 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr14 | NT_010164 | AL589743 | 17105361 | 3 | 33817 | 0 | 0 | 33817 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 |   |   | AC080181 | 13119166 | 1 | 24405 | 0 | 0 | 24405 |
| S/G/Y/R/B/O |
NT_011516 | AP000527 | 13133402 | 3 | chr22 | NT_011516 | AP000528 | 13166751 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000527 | 13133402 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 40286 | 0 | 0 | 40286 |
| S/G/Y/R/B/O |
NT_011516 | AP000527 | 13133402 | 3 |   |   | AC080181 | 13133402 | 1 | 40189 | 0 | 0 | 40189 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr22 | NT_011516 | AP000529 | 13202795 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr14 | NT_010164 | AL512624 | 17319402 | 3 | 39349 | 0 | 0 | 39349 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 42006 | 0 | 0 | 42006 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 | chr14 | NT_010164 | AL512624 | 17319402 | 3 | 37782 | 0 | 0 | 37782 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 | chr14 | NT_010164 | AL589182 | 17232147 | 3 | 21404 | 0 | 0 | 21404 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   | AC080181 | 17232147 | 1 | 12395 | 0 | 11651 | 24046 |
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