Chromosome 22 - Clone Overlaps

Chromosome 22 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_011516	NT_028395	NT_011519	NT_011520	NT_011521	NT_011522	NT_011523	NT_030872
NT_011525	NT_019197	NT_011526

NT_011519

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_011519	AP000543	13792348	3	chr22	NT_011519	AP000544	13810166	3	18946	0	0	18946
S/G/Y/R/B/O	NT_011519	AP000544	13810166	3	chr22	NT_011519	AP000545	13849159	3	4336	0	0	4336
S/G/Y/R/B/O	NT_011519	AP000545	13849159	3	chr22	NT_011519	AP000546	13882069	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AP000546	13882069	3	chr22	NT_011519	AP000547	13917811	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AP000547	13917811	3	chr22	NT_011519	AP000365	14036360	3	33342	0	0	33342
S/G/Y/R/B/O	NT_011519	AP000365	14036360	3	chr22	NT_011519	AC005301	14108179	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AP000365	14036360	3			AP000548	13917811	3	59516	0	0	59516
S/G/Y/R/B/O	NT_011519	AC005301	14108179	3	chr22	NT_011519	AC007064	14221867	3	36275	0	0	36275
S/G/Y/R/B/O	NT_011519	AC005301	14108179	3			AP000548	14221867	3	74215	0	0	74215
S/G/Y/R/B/O	NT_011519	AC005301	14108179	3			M60676	14221867	3	20815	0	0	20815
S/G/Y/R/B/O	NT_011519	AC007064	14221867	3	chr22	NT_011519	AC006548	14248207	3	62088	0	0	62088
S/G/Y/R/B/O	NT_011519	AC006548	14248207	3	chr22	NT_011519	AC006946	14448356	3	42583	0	0	42583
S/G/Y/R/B/O	NT_011519	AC006946	14448356	3	chr22	NT_011519	AC005300	14533834	3	64771	0	0	64771
S/G/Y/R/B/O	NT_011519	AC006946	14448356	3			AP000549	14248207	3	35754	0	0	35754
S/G/Y/R/B/O	NT_011519	AC005300	14533834	3	chr22	NT_011519	AC005399	14629396	3	5682	0	0	5682
S/G/Y/R/B/O	NT_011519	AC005399	14629396	3	chr22	NT_011519	AC004019	14759040	3	22171	0	0	22171
S/G/Y/R/B/O	NT_011519	AC004019	14759040	3	chr22	NT_011519	AC007666	14911301	3	104256	0	0	104256
S/G/Y/R/B/O	NT_011519	AC004019	14759040	3			AC000052	14533834	3	185295	0	0	185295
S/G/Y/R/B/O	NT_011519	AC007666	14911301	3	chr22	NT_011519	AC006285	15050689	3	15507	0	0	15507
S/G/Y/R/B/O	NT_011519	AC007666	14911301	3			AC000052	14911301	3	108983	0	0	108983
S/G/Y/R/B/O	NT_011519	AC006285	15050689	3	chr22	NT_011519	AC016026	15185354	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC006285	15050689	3			AC007845	14911301	3	33899	0	0	33899
S/G/Y/R/B/O	NT_011519	AC006285	15050689	3			AC016025	14911301	3	105662	0	0	105662
S/G/Y/R/B/O	NT_011519	AC016026	15185354	3	chr22	NT_011519	AC016027	15366129	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC016026	15185354	3			AC007845	14911301	3	106614	0	0	106614
S/G/Y/R/B/O	NT_011519	AC016026	15185354	3			AC016025	14911301	3	81121	0	0	81121
S/G/Y/R/B/O	NT_011519	AC016027	15366129	3	chr22	NT_011519	AC008101	15459471	3	77927	0	0	77927
S/G/Y/R/B/O	NT_011519	AC016027	15366129	3			AC016830	15459471	3	174541	0	0	174541
S/G/Y/R/B/O	NT_011519	AC008101	15459471	3	chr22	NT_011519	AC008079	15492047	3	94966	0	0	94966
S/G/Y/R/B/O	NT_011519	AC008101	15459471	3			AC016830	15366129	3	90967	0	0	90967
S/G/Y/R/B/O	NT_011519	AC008079	15492047	3	chr22	NT_011519	AC008132	15637330	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC008079	15492047	3			AC007981	15366129	3	19774	0	0	19774
S/G/Y/R/B/O	NT_011519	AC008079	15492047	3			AC011718	15459471	3	47473	0	0	47473
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3	chr22	NT_011519	AC008103	15773364	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3	chr22	NT_011520	AP000551	18302680	3	12079	0	0	12079
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3			AC007981	15459471	3	132124	0	0	132124
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3			AC011718	15459471	3	62687	0	0	62687
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3			AC012330	15459471	3	94124	0	0	94124
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3			AC013360	15459471	1	81309	0	0	81309
S/G/Y/R/B/O	NT_011519	AC008132	15637330	3			AC023491	15459471	3	135493	0	0	135493
S/G/Y/R/B/O	NT_011519	AC008103	15773364	3	chr22	NT_011519	AC007326	15871921	3	42358	0	0	42358
S/G/Y/R/B/O	NT_011519	AC008103	15773364	3			AC007325	18302680	3	92362	0	0	92362
S/G/Y/R/B/O	NT_011519	AC008103	15773364	3			AC013360	15871921	1	16676	0	0	16676
S/G/Y/R/B/O	NT_011519	AC007326	15871921	3	chr22	NT_011519	AC000095	15932454	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC007326	15871921	3			AC000069	15871921	3	38127	0	0	38127
S/G/Y/R/B/O	NT_011519	AC007326	15871921	3			AC007325	15871921	3	37870	0	0	37870
S/G/Y/R/B/O	NT_011519	AC000095	15932454	3	chr22	NT_011519	AC004461	15972768	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC000095	15932454	3			AC002522	15773364	3	28483	0	0	28483
S/G/Y/R/B/O	NT_011519	AC004461	15972768	3	chr22	NT_011519	AC004462	16001957	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC004461	15972768	3			AC002522	15773364	3	27058	0	0	27058
S/G/Y/R/B/O	NT_011519	AC004461	15972768	3			L77570	15773364	3	37879	0	0	37879
S/G/Y/R/B/O	NT_011519	AC004462	16001957	3	chr22	NT_011519	AC004471	16031250	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC004462	16001957	3			L77570	15773364	3	35988	0	0	35988
S/G/Y/R/B/O	NT_011519	AC004471	16031250	3	chr22	NT_011519	AC004463	16074540	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC004471	16031250	3			AL359537	15773364	1	26674	0	0	26674
S/G/Y/R/B/O	NT_011519	AC004471	16031250	3			AL391096	15773364	1	43271	0	0	43271
S/G/Y/R/B/O	NT_011519	AC004471	16031250	3			L77570	15773364	3	42127	0	0	42127
S/G/Y/R/B/O	NT_011519	AC004463	16074540	3	chr22	NT_011519	L77569	16108997	3	5798	0	0	5798
S/G/Y/R/B/O	NT_011519	AC004463	16074540	3			AL359537	15773364	1	20771	9037	0	29808
S/G/Y/R/B/O	NT_011519	AC004463	16074540	3			AL391096	15773364	1	33758	0	0	33758
S/G/Y/R/B/O	NT_011519	L77569	16108997	3	chr22	NT_011519	AC000081	16136237	3	14440	0	0	14440
S/G/Y/R/B/O	NT_011519	L77569	16108997	3			AC000072	16108997	3	39501	0	0	39501
S/G/Y/R/B/O	NT_011519	L77569	16108997	3			AL359537	16074540	1	23263	4747	0	28010
S/G/Y/R/B/O	NT_011519	AC000081	16136237	3	chr22	NT_011519	AC000094	16180242	3	4412	0	0	4412
S/G/Y/R/B/O	NT_011519	AC000081	16136237	3			AL359537	16180242	1	14224	2278	6664	23166
S/G/Y/R/B/O	NT_011519	AC000081	16136237	3			AL391096	16180242	1	29061	0	0	29061
S/G/Y/R/B/O	NT_011519	AC000094	16180242	3	chr22	NT_011519	AC000085	16186681	3	23469	0	0	23469
S/G/Y/R/B/O	NT_011519	AC000094	16180242	3			AL391096	16186681	1	22890	0	0	22890
S/G/Y/R/B/O	NT_011519	AC000085	16186681	3	chr22	NT_011519	AC000092	16286833	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC000085	16186681	3			AC000073	16186681	3	36114	0	0	36114
S/G/Y/R/B/O	NT_011519	AC000092	16286833	3	chr22	NT_011519	AC000079	16325515	3	0	1875	0	1875
S/G/Y/R/B/O	NT_011519	AC000079	16325515	3	chr22	NT_011519	AC000068	16363180	3	15191	0	0	15191
S/G/Y/R/B/O	NT_011519	AC000068	16363180	3	chr22	NT_011519	AC000087	16391923	3	6264	0	0	6264
S/G/Y/R/B/O	NT_011519	AC000087	16391923	3	chr22	NT_011519	AC000088	16427730	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC000088	16427730	3	chr22	NT_011519	AC000082	16464164	3	17274	0	0	17274
S/G/Y/R/B/O	NT_011519	AC000088	16427730	3			AC000071	16363180	3	38579	0	0	38579
S/G/Y/R/B/O	NT_011519	AC000082	16464164	3	chr22	NT_011519	AC000070	16488908	3	14394	0	0	14394
S/G/Y/R/B/O	NT_011519	AC000070	16488908	3	chr22	NT_011519	AC000086	16513213	3	2867	0	0	2867
S/G/Y/R/B/O	NT_011519	AC000086	16513213	3	chr22	NT_011519	AC000077	16553813	3	2055	0	0	2055
S/G/Y/R/B/O	NT_011519	AC000077	16553813	3	chr22	NT_011519	AC002475	16587497	3	0	0	100	100
S/G/Y/R/B/O	NT_011519	AC002475	16587497	3	chr22	NT_011519	AC000067	16592114	3	0	0	120	120
S/G/Y/R/B/O	NT_011519	AC000067	16592114	3	chr22	NT_011519	AC000093	16632639	3	0	1509	0	1509
S/G/Y/R/B/O	NT_011519	AC000093	16632639	3	chr22	NT_011519	AC000091	16673816	3	6643	0	0	6643
S/G/Y/R/B/O	NT_011519	AC000093	16632639	3			AF006988	16673816	3	13692	0	0	13692
S/G/Y/R/B/O	NT_011519	AC000091	16673816	3	chr22	NT_011519	AC000089	16712101	3	0	846	0	846
S/G/Y/R/B/O	NT_011519	AC000089	16712101	3	chr22	NT_011519	AC000076	16751009	3	9248	0	0	9248
S/G/Y/R/B/O	NT_011519	AC000076	16751009	3	chr22	NT_011519	AC000078	16782852	3	0	618	0	618
S/G/Y/R/B/O	NT_011519	AC000078	16782852	3	chr22	NT_011519	AC000090	16826660	3	0	746	0	746
S/G/Y/R/B/O	NT_011519	AC000090	16826660	3	chr22	NT_011519	AC000080	16871330	3	15216	0	0	15216
S/G/Y/R/B/O	NT_011519	AC000080	16871330	3	chr22	NT_011519	AC005663	16900204	3	26063	0	0	26063
S/G/Y/R/B/O	NT_011519	AC005663	16900204	3	chr22	NT_011519	AC006547	16977128	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC005663	16900204	3			AC000074	16900204	3	44401	0	0	44401
S/G/Y/R/B/O	NT_011519	AC005663	16900204	3			AC000084	16871330	3	39372	0	0	39372
S/G/Y/R/B/O	NT_011519	AC005663	16900204	3			AC002491	16871330	3	42240	0	0	42240
S/G/Y/R/B/O	NT_011519	AC005663	16900204	3			AC005664	16871330	3	74329	0	0	74329
S/G/Y/R/B/O	NT_011519	AC006547	16977128	3	chr22	NT_011519	AC007663	17081510	3	0	0	0	0
S/G/Y/R/B/O	NT_011519	AC006547	16977128	3			AC000083	16871330	3	44542	0	0	44542
S/G/Y/R/B/O	NT_011519	AC006547	16977128	3			AC000097	16871330	3	162180	0	0	162180
S/G/Y/R/B/O	NT_011519	AC006547	16977128	3			AC005664	16871330	3	65378	0	0	65378
S/G/Y/R/B/O	NT_011519	AC006547	16977128	3			AC006549	16871330	3	97140	0	0	97140
S/G/Y/R/B/O	NT_011519	AC007663	17081510	3
S/G/Y/R/B/O	NT_011519	AC007663	17081510	3			AC006549	16871330	3	141836	0	0	141836
S/G/Y/R/B/O	NT_011519	AC007663	17081510	3			AC058790	16871330	3	167564	0	0	167564