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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 | chrX | NT_033328 | AL513494 | 99638585 | 1 | 91536 | 0 | 0 | 91536 |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 | chrX | NT_028406 | AC002071 | 112200410 | 3 | 63672 | 0 | 0 | 63672 |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 | chr16 | NT_010419 | AC003119 | 4574243 | 3 | 24686 | 9151 | 2171 | 36008 |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 | chr16 | NT_010419 | AC009134 | 4417538 | 3 | 51945 | 4858 | 2073 | 58876 |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 |   |   | AC012628 | 4417538 | 2 | 25748 | 7331 | 2059 | 35138 |
| S/G/Y/R/B/O |
NT_033328 | AL513042 | 99567416 | 1 |   |   | U91325 | 112193527 | 3 | 43079 | 4593 | 2074 | 49746 |
| S/G/Y/R/B/O |
NT_033328 | AL513494 | 99638585 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033328 | AL513494 | 99638585 | 1 | chrX | NT_028406 | AC002071 | 112200410 | 3 | 63687 | 0 | 0 | 63687 |
| S/G/Y/R/B/O |
NT_033328 | AL513494 | 99638585 | 1 | chrX | NT_028406 | AC004823 | 112268513 | 3 | 115644 | 0 | 0 | 115644 |
| S/G/Y/R/B/O |
NT_033328 | AL513494 | 99638585 | 1 | chrX | NT_028406 | AC005002 | 112384386 | 3 | 12212 | 0 | 0 | 12212 |
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