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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010419 | AC099489 | 2676323 | 1 | chr16 | NT_010419 | AC007616 | 2767291 | 2 | 6066 | 0 | 17067 | 23133 |
| S/G/Y/R/B/O |
NT_010419 | AC007616 | 2767291 | 2 | chr16 | NT_010419 | AC007613 | 2959572 | 3 | 0 | 0 | 63977 | 63977 |
| S/G/Y/R/B/O |
NT_010419 | AC007613 | 2959572 | 3 | chr16 | NT_010419 | AC007226 | 3120326 | 3 | 80053 | 0 | 0 | 80053 |
| S/G/Y/R/B/O |
NT_010419 | AC007613 | 2959572 | 3 |   |   | AC010654 | 2767291 | 3 | 68867 | 0 | 0 | 68867 |
| S/G/Y/R/B/O |
NT_010419 | AC007226 | 3120326 | 3 | chr16 | NT_010419 | AC007216 | 3199879 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010419 | AC007226 | 3120326 | 3 |   |   | AC009048 | 2959572 | 3 | 106310 | 0 | 0 | 106310 |
| S/G/Y/R/B/O |
NT_010419 | AC007226 | 3120326 | 3 |   |   | AC010654 | 2959572 | 3 | 148401 | 0 | 0 | 148401 |
| S/G/Y/R/B/O |
NT_010419 | AC007216 | 3199879 | 3 | chr16 | NT_010419 | AC007601 | 3353037 | 3 | 14887 | 0 | 0 | 14887 |
| S/G/Y/R/B/O |
NT_010419 | AC007216 | 3199879 | 3 |   |   | AC009048 | 3353037 | 3 | 76987 | 0 | 0 | 76987 |
| S/G/Y/R/B/O |
NT_010419 | AC007216 | 3199879 | 3 |   |   | AC010654 | 3353037 | 3 | 19603 | 0 | 0 | 19603 |
| S/G/Y/R/B/O |
NT_010419 | AC007216 | 3199879 | 3 |   |   | AC034281 | 58853965 | 1 | 44348 | 2962 | 3908 | 51218 |
| S/G/Y/R/B/O |
NT_010419 | AC007216 | 3199879 | 3 |   |   | U95742 | 58853965 | 3 | 139061 | 0 | 0 | 139061 |
| S/G/Y/R/B/O |
NT_010419 | AC007601 | 3353037 | 3 | chr16 | NT_010419 | AC092365 | 3500044 | 3 | 16924 | 0 | 0 | 16924 |
| S/G/Y/R/B/O |
NT_010419 | AC007601 | 3353037 | 3 |   |   | AC034281 | 3199879 | 1 | 119560 | 2962 | 8896 | 131418 |
| S/G/Y/R/B/O |
NT_010419 | AC007601 | 3353037 | 3 |   |   | AC037438 | 3199879 | 1 | 69877 | 3639 | 0 | 73516 |
| S/G/Y/R/B/O |
NT_010419 | AC092365 | 3500044 | 3 | chr16 | NT_010419 | AC007598 | 3664420 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010419 | AC092365 | 3500044 | 3 |   |   | AC009172 | 3353037 | 1 | 28844 | 2508 | 0 | 31352 |
| S/G/Y/R/B/O |
NT_010419 | AC092365 | 3500044 | 3 |   |   | AC037438 | 3353037 | 1 | 70582 | 12330 | 3328 | 86240 |
| S/G/Y/R/B/O |
NT_010419 | AC007598 | 3664420 | 3 | chr16 | NT_010419 | U95737 | 3789174 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010419 | AC007598 | 3664420 | 3 |   |   | AC007612 | 3353037 | 1 | 119016 | 0 | 64033 | 183049 |
| S/G/Y/R/B/O |
NT_010419 | AC007598 | 3664420 | 3 |   |   | AC009172 | 3353037 | 1 | 83127 | 0 | 1727 | 84854 |
| S/G/Y/R/B/O |
NT_010419 | U95737 | 3789174 | 3 | chr16 | NT_010419 | AC010333 | 3882605 | 3 | 8647 | 0 | 0 | 8647 |
| S/G/Y/R/B/O |
NT_010419 | U95737 | 3789174 | 3 |   |   | AC007612 | 3353037 | 1 | 12313 | 0 | 12151 | 24464 |
| S/G/Y/R/B/O |
NT_010419 | U95737 | 3789174 | 3 |   |   | AC009172 | 3353037 | 1 | 15792 | 2508 | 0 | 18300 |
| S/G/Y/R/B/O |
NT_010419 | AC010333 | 3882605 | 3 | chr16 | NT_010419 | AC109597 | 4033773 | 3 | 32318 | 0 | 0 | 32318 |
| S/G/Y/R/B/O |
NT_010419 | AC010333 | 3882605 | 3 |   |   | AC068151 | 3882605 | 1 | 63179 | 2294 | 0 | 65473 |
| S/G/Y/R/B/O |
NT_010419 | AC109597 | 4033773 | 3 | chr16 | NT_010419 | AC092324 | 4171041 | 3 | 65995 | 0 | 0 | 65995 |
| S/G/Y/R/B/O |
NT_010419 | AC109597 | 4033773 | 3 |   |   | AC068151 | 3882605 | 1 | 115970 | 5520 | 7017 | 128507 |
| S/G/Y/R/B/O |
NT_010419 | AC092324 | 4171041 | 3 | chr16 | NT_010419 | AC092380 | 4265415 | 3 | 14904 | 0 | 0 | 14904 |
| S/G/Y/R/B/O |
NT_010419 | AC092324 | 4171041 | 3 |   |   | AC068151 | 91944076 | 1 | 28077 | 0 | 0 | 28077 |
| S/G/Y/R/B/O |
NT_010419 | AC092380 | 4265415 | 3 | chr16 | NT_010419 | AC009134 | 4417538 | 3 | 36391 | 0 | 0 | 36391 |
| S/G/Y/R/B/O |
NT_010419 | AC092380 | 4265415 | 3 |   |   | AC012628 | 4417538 | 2 | 21301 | 0 | 0 | 21301 |
| S/G/Y/R/B/O |
NT_010419 | AC009134 | 4417538 | 3 | chr16 | NT_010419 | AC003119 | 4574243 | 3 | 13493 | 0 | 0 | 13493 |
| S/G/Y/R/B/O |
NT_010419 | AC009134 | 4417538 | 3 | chrX | NT_033328 | AL513042 | 99567416 | 1 | 51945 | 4858 | 2073 | 58876 |
| S/G/Y/R/B/O |
NT_010419 | AC009134 | 4417538 | 3 |   |   | AC012628 | 4574243 | 2 | 156021 | 2464 | 12626 | 171111 |
| S/G/Y/R/B/O |
NT_010419 | AC009134 | 4417538 | 3 |   |   | U91325 | 99567416 | 3 | 132498 | 0 | 0 | 132498 |
| S/G/Y/R/B/O |
NT_010419 | AC003119 | 4574243 | 3 | chr16 | NT_010419 | AC003009 | 4648782 | 3 | 11912 | 0 | 0 | 11912 |
| S/G/Y/R/B/O |
NT_010419 | AC003119 | 4574243 | 3 | chrX | NT_033328 | AL513042 | 99567416 | 1 | 24686 | 9151 | 2171 | 36008 |
| S/G/Y/R/B/O |
NT_010419 | AC003119 | 4574243 | 3 |   |   | U91325 | 99567416 | 3 | 15901 | 0 | 0 | 15901 |
| S/G/Y/R/B/O |
NT_010419 | AC003009 | 4648782 | 3 | chr16 | NT_010419 | U91319 | 4789352 | 3 | 10462 | 0 | 0 | 10462 |
| S/G/Y/R/B/O |
NT_010419 | U91319 | 4789352 | 3 | chr16 | NT_010419 | AF001551 | 4904517 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_010419 | AF001551 | 4904517 | 3 |   |   |   |   |   |   |   |   |   |
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