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| hub gateway | description |
|---|---|
| primates | NCBI primate genomes (616 assemblies) |
| mammals | NCBI mammal genomes (836 assemblies) |
| birds | NCBI bird genomes (543 assemblies) |
| fishes | NCBI fish genomes (637 assemblies) |
| vertebrate | NCBI other vertebrate genomes (406 assemblies) |
| invertebrate | NCBI invertebrate genomes (1944 assemblies) |
| fungi | NCBI fungi genomes (4128 assemblies) |
| plants | NCBI plant genomes (444 assemblies) |
| viral | NCBI virus genomes (15061 assemblies) |
| archaea | NCBI archaea genomes (2702 assemblies) |
| bacteria | NCBI bacteria genomes (22350 assemblies) |
| collections below are subsets of the assemblies above | |
| VGP | Vertebrate Genomes Project collection (1294 assemblies) |
| CCGP | The California Conservation Genomics Project (126 assemblies) |
| HPRC | Human Pangenome Reference Consortium (464 assemblies) |
| BRC | BRC Analytics - Bioinformatics Research Center (5519 assemblies) |
| globalReference | Global Human Reference genomes, January 2020 (10 assemblies) |
| mouseStrains | 16 mouse strain assembly and track hub, May 2017 |
| legacy | NCBI genomes legacy/superseded by newer versions (689 assemblies) |
Please note: text file listing of 50343 genome assembly hubs
Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
Please use the Assembly Search page to find and request GenBank assemblies that have not yet been included in the collections here.
To reference these resources in publications, please credit:
Clawson, H., Lee, B.T., Raney, B.J. et al.
GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023).
https://doi.org/10.1186/s13059-023-03057-x