Archaea Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of archaea only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser[IGV browser]		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link
1 Methanobrevibacter ruminantium (M1 2010)[IGV] Methanobrevibacter ruminantium M1 GCF_000024185.1_ASM2418v1 SAMN02603710 PRJNA34681 2010-02-05
2 Methanococcus voltae (A3 2010)[IGV] Methanococcus voltae A3 GCF_000006175.1_ASM617v2 SAMN00000040 PRJNA20131 2010-06-03
3 Methanopyrus kandleri (AV19 2002)[IGV] Methanopyrus kandleri AV19 GCF_000007185.1_ASM718v1 SAMN02603235 PRJNA294 2002-04-09
4 Methanosarcina acetivorans (C2A 2002)[IGV] Methanosarcina acetivorans C2A GCF_000007345.1_ASM734v1 SAMN03081414 PRJNA290 2002-04-09

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 600 assemblies assembly stats track stats
Mammals 689 assemblies assembly stats track stats
Birds 441 assemblies assembly stats track stats
Fishes 500 assemblies assembly stats track stats
other vertebrates 322 assemblies assembly stats track stats
Invertebrates 1195 assemblies assembly stats track stats
Plants 340 assemblies assembly stats track stats
Fungi 932 assemblies assembly stats track stats
Viruses 708 assemblies assembly stats track stats
Archaea 4 assemblies assembly stats track stats
Bacteria 5538 assemblies assembly stats track stats
legacy/superseded 685 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1303 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 464 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 1633 assemblies assembly stats track stats