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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_027140 | AL591932 | 111432448 | 3 | chr13 | NT_027140 | AL136302 | 111467550 | 3 | 0 | 1988 | 0 | 1988 |
| S/G/Y/R/B/O |
NT_027140 | AL136302 | 111467550 | 3 | chr13 | NT_027140 | AL138691 | 111518708 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027140 | AL138691 | 111518708 | 3 | chr13 | NT_027140 | AL356961 | 111666273 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL356961 | 111666273 | 3 | chr13 | NT_027140 | AL162499 | 111765642 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL356961 | 111666273 | 3 |   |   | AC012334 | 111666273 | 1 | 38298 | 2620 | 40648 | 81566 |
| S/G/Y/R/B/O |
NT_027140 | AL162499 | 111765642 | 3 | chr13 | NT_027140 | AL160033 | 111906449 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027140 | AL162499 | 111765642 | 3 |   |   | AC012334 | 111765642 | 1 | 35428 | 4337 | 15151 | 54916 |
| S/G/Y/R/B/O |
NT_027140 | AL160033 | 111906449 | 3 | chr13 | NT_027140 | AL139384 | 112088711 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL139384 | 112088711 | 3 | chr13 | NT_027140 | AL162711 | 112275768 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL162711 | 112275768 | 3 | chr13 | NT_027140 | AL356752 | 112305410 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL162711 | 112275768 | 3 |   |   | AC011695 | 112275768 | 1 | 22360 | 1034 | 2010 | 25404 |
| S/G/Y/R/B/O |
NT_027140 | AL356752 | 112305410 | 3 | chr13 | NT_027140 | AL356740 | 112448827 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027140 | AL356752 | 112305410 | 3 |   |   | AC011695 | 112305410 | 1 | 83011 | 0 | 30135 | 113146 |
| S/G/Y/R/B/O |
NT_027140 | AL356740 | 112448827 | 3 | chr13 | NT_027140 | AL596093 | 112619655 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_027140 | AL596093 | 112619655 | 3 | chr13 | NT_027140 | AL162454 | 112657121 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_027140 | AL162454 | 112657121 | 3 | chr13 | NT_027140 | AL137002 | 112660125 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_027140 | AL137002 | 112660125 | 3 | chr13 | NT_027140 | AL136221 | 112791058 | 2 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_027140 | AL137002 | 112660125 | 3 |   |   | AF440358 | 112619655 | 3 | 16397 | 0 | 0 | 16397 |
| S/G/Y/R/B/O |
NT_027140 | AL137002 | 112660125 | 3 |   |   | AF466933 | 112619655 | 3 | 18371 | 0 | 0 | 18371 |
| S/G/Y/R/B/O |
NT_027140 | AL136221 | 112791058 | 2 | chr13 | NT_027140 | AL160251 | 112979854 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_027140 | AL136221 | 112791058 | 2 |   |   | AC007721 | 112657121 | 2 | 170730 | 0 | 0 | 170730 |
| S/G/Y/R/B/O |
NT_027140 | AL160251 | 112979854 | 3 | chr13 | NT_027140 | AL442125 | 113049057 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_027140 | AL160251 | 112979854 | 3 |   |   | AC007721 | 112979854 | 2 | 10377 | 0 | 0 | 10377 |
| S/G/Y/R/B/O |
NT_027140 | AL442125 | 113049057 | 3 |   |   |   |   |   |   |   |   |   |
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