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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033922 | AL606514 | 44685662 | 3 | chr13 | NT_033922 | AL139326 | 44725034 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL606514 | 44685662 | 3 |   |   | AL627107 | 44317783 | 1 | 39334 | 0 | 0 | 39334 |
| S/G/Y/R/B/O |
NT_033922 | AL139326 | 44725034 | 3 | chr13 | NT_033922 | AL139320 | 44898623 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL139326 | 44725034 | 3 |   |   | AL627107 | 44317783 | 1 | 48827 | 0 | 0 | 48827 |
| S/G/Y/R/B/O |
NT_033922 | AL139320 | 44898623 | 3 | chr13 | NT_033922 | AL157819 | 45010630 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL157819 | 45010630 | 3 | chr13 | NT_033922 | AL445232 | 45121441 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL157819 | 45010630 | 3 |   |   | AC012039 | 44317783 | 3 | 73523 | 0 | 0 | 73523 |
| S/G/Y/R/B/O |
NT_033922 | AL445232 | 45121441 | 3 | chr13 | NT_033922 | AL157758 | 45269444 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL445232 | 45121441 | 3 |   |   | AC012039 | 45121441 | 3 | 82945 | 0 | 0 | 82945 |
| S/G/Y/R/B/O |
NT_033922 | AL157758 | 45269444 | 3 | chr13 | NT_033922 | AL137141 | 45327441 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL137141 | 45327441 | 3 | chr13 | NT_033922 | AL139801 | 45508021 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL137141 | 45327441 | 3 |   |   | AL139180 | 45121441 | 1 | 50298 | 4224 | 2182 | 56704 |
| S/G/Y/R/B/O |
NT_033922 | AL139801 | 45508021 | 3 | chr13 | NT_033922 | AL138686 | 45653402 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_033922 | AL139801 | 45508021 | 3 |   |   | AL139180 | 45653402 | 1 | 78969 | 7045 | 6731 | 92745 |
| S/G/Y/R/B/O |
NT_033922 | AL138686 | 45653402 | 3 | chr13 | NT_033922 | AL157365 | 45767926 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL157365 | 45767926 | 3 | chr13 | NT_033922 | AL138704 | 45804133 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL138704 | 45804133 | 3 | chr13 | NT_033922 | AL359880 | 45969153 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL359880 | 45969153 | 3 | chr13 | NT_033922 | AL136958 | 46000318 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL136958 | 46000318 | 3 | chr13 | NT_033922 | AL160397 | 46106535 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL160397 | 46106535 | 3 | chr13 | NT_033922 | AL590790 | 46310491 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033922 | AL160397 | 46106535 | 3 |   |   | AC011153 | 45767926 | 1 | 48485 | 0 | 0 | 48485 |
| S/G/Y/R/B/O |
NT_033922 | AL590790 | 46310491 | 3 | chr13 | NT_033922 | AL391683 | 46334567 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033922 | AL590790 | 46310491 | 3 |   |   | AC011153 | 46310491 | 1 | 26054 | 0 | 0 | 26054 |
| S/G/Y/R/B/O |
NT_033922 | AL391683 | 46334567 | 3 | chr13 | NT_033922 | AL354814 | 46500940 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL391683 | 46334567 | 3 |   |   | AC011153 | 46334567 | 1 | 78275 | 2679 | 0 | 80954 |
| S/G/Y/R/B/O |
NT_033922 | AL354814 | 46500940 | 3 | chr13 | NT_033922 | AL359180 | 46570966 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL359180 | 46570966 | 3 | chr13 | NT_033922 | AL590811 | 46730095 | 3 | 0 | 1990 | 0 | 1990 |
| S/G/Y/R/B/O |
NT_033922 | AL590811 | 46730095 | 3 | chr13 | NT_033922 | AL157765 | 46766675 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033922 | AL157765 | 46766675 | 3 | chr13 | NT_033922 | AL138959 | 46894329 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL157765 | 46766675 | 3 |   |   | AC067972 | 46570966 | 1 | 35110 | 4849 | 1235 | 41194 |
| S/G/Y/R/B/O |
NT_033922 | AL138959 | 46894329 | 3 | chr13 | NT_033922 | AL138962 | 47063020 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL138959 | 46894329 | 3 |   |   | AC067972 | 46730095 | 1 | 111149 | 3607 | 0 | 114756 |
| S/G/Y/R/B/O |
NT_033922 | AL138962 | 47063020 | 3 | chr13 | NT_033922 | AL157369 | 47187438 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL157369 | 47187438 | 3 | chr13 | NT_033922 | AL158196 | 47271165 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL158196 | 47271165 | 3 | chr13 | NT_033922 | AL139322 | 47423659 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139322 | 47423659 | 3 | chr13 | NT_033922 | AL392048 | 47544332 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL392048 | 47544332 | 3 | chr13 | NT_033922 | AL136960 | 47681574 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL392048 | 47544332 | 3 |   |   | L11910 | 47423659 | 3 | 122400 | 0 | 0 | 122400 |
| S/G/Y/R/B/O |
NT_033922 | AL136960 | 47681574 | 3 | chr13 | NT_033922 | AL157813 | 47744299 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL136960 | 47681574 | 3 |   |   | L11910 | 47744299 | 3 | 57444 | 0 | 0 | 57444 |
| S/G/Y/R/B/O |
NT_033922 | AL157813 | 47744299 | 3 | chr13 | NT_033922 | AL137118 | 47858718 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL137118 | 47858718 | 3 | chr13 | NT_033922 | AL139182 | 48021064 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139182 | 48021064 | 3 | chr13 | NT_033922 | AL603827 | 48154166 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL139182 | 48021064 | 3 |   |   | AC009929 | 48021064 | 1 | 110516 | 5571 | 1214 | 117301 |
| S/G/Y/R/B/O |
NT_033922 | AL139182 | 48021064 | 3 |   |   | AC018397 | 54231280 | 1 | 90939 | 4108 | 26398 | 121445 |
| S/G/Y/R/B/O |
NT_033922 | AL603827 | 48154166 | 3 | chr13 | NT_033922 | AL161421 | 48158511 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL161421 | 48158511 | 1 | chr13 | NT_033922 | AL359184 | 48307956 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL161421 | 48158511 | 1 |   |   | AC009929 | 47858718 | 1 | 31181 | 0 | 0 | 31181 |
| S/G/Y/R/B/O |
NT_033922 | AL161421 | 48158511 | 1 |   |   | AC018397 | 54231280 | 1 | 41348 | 0 | 0 | 41348 |
| S/G/Y/R/B/O |
NT_033922 | AL161421 | 48158511 | 1 |   |   | AL596304 | 54231280 | 1 | 151386 | 0 | 0 | 151386 |
| S/G/Y/R/B/O |
NT_033922 | AL359184 | 48307956 | 3 | chr13 | NT_033922 | AL137000 | 48331875 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL359184 | 48307956 | 3 |   |   | AL596304 | 54231280 | 1 | 23994 | 0 | 0 | 23994 |
| S/G/Y/R/B/O |
NT_033922 | AL137000 | 48331875 | 3 | chr13 | NT_033922 | AL138875 | 48495059 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL137000 | 48331875 | 3 |   |   | AL596304 | 48495059 | 1 | 163262 | 2800 | 0 | 166062 |
| S/G/Y/R/B/O |
NT_033922 | AL138875 | 48495059 | 3 | chr13 | NT_033922 | AL136218 | 48584766 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL136218 | 48584766 | 3 | chr13 | NT_033922 | AL139321 | 48744529 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139321 | 48744529 | 3 | chr13 | NT_033922 | AL135901 | 48852560 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL135901 | 48852560 | 3 | chr13 | NT_033922 | AL136301 | 49001893 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL136301 | 49001893 | 3 | chr13 | NT_033922 | AL136123 | 49050523 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL136123 | 49050523 | 3 | chr13 | NT_033922 | AL391993 | 49228574 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL136123 | 49050523 | 3 |   |   | AF334404 | 49050523 | 3 | 23390 | 0 | 0 | 23390 |
| S/G/Y/R/B/O |
NT_033922 | AL136123 | 49050523 | 3 |   |   | AF440619 | 49050523 | 3 | 23388 | 0 | 0 | 23388 |
| S/G/Y/R/B/O |
NT_033922 | AL391993 | 49228574 | 3 | chr13 | NT_033922 | AL137060 | 49264326 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL391993 | 49228574 | 3 |   |   | AF334404 | 49001893 | 3 | 37714 | 0 | 0 | 37714 |
| S/G/Y/R/B/O |
NT_033922 | AL391993 | 49228574 | 3 |   |   | AF440619 | 49001893 | 3 | 37708 | 0 | 0 | 37708 |
| S/G/Y/R/B/O |
NT_033922 | AL137060 | 49264326 | 3 | chr13 | NT_033922 | AL157367 | 49417213 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL137060 | 49264326 | 3 |   |   | AF279660 | 49001893 | 3 | 154582 | 0 | 0 | 154582 |
| S/G/Y/R/B/O |
NT_033922 | AL137060 | 49264326 | 3 |   |   | AF440619 | 49001893 | 3 | 154722 | 0 | 0 | 154722 |
| S/G/Y/R/B/O |
NT_033922 | AL157367 | 49417213 | 3 | chr13 | NT_033922 | AL138696 | 49502891 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL157367 | 49417213 | 3 |   |   | AF279660 | 49001893 | 3 | 85582 | 0 | 0 | 85582 |
| S/G/Y/R/B/O |
NT_033922 | AL157367 | 49417213 | 3 |   |   | AF440619 | 49001893 | 3 | 85591 | 0 | 0 | 85591 |
| S/G/Y/R/B/O |
NT_033922 | AL157367 | 49417213 | 3 |   |   | AL450169 | 49001893 | 3 | 85598 | 0 | 0 | 85598 |
| S/G/Y/R/B/O |
NT_033922 | AL138696 | 49502891 | 3 | chr13 | NT_033922 | AL158195 | 49633722 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL138696 | 49502891 | 3 |   |   | AC013358 | 49001893 | 3 | 98347 | 0 | 0 | 98347 |
| S/G/Y/R/B/O |
NT_033922 | AL138696 | 49502891 | 3 |   |   | AF440620 | 49001893 | 3 | 78638 | 0 | 0 | 78638 |
| S/G/Y/R/B/O |
NT_033922 | AL138696 | 49502891 | 3 |   |   | AL450169 | 49001893 | 3 | 130695 | 0 | 0 | 130695 |
| S/G/Y/R/B/O |
NT_033922 | AL158195 | 49633722 | 3 | chr13 | NT_033922 | AL161424 | 49756831 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL158195 | 49633722 | 3 |   |   | AC005949 | 49001893 | 3 | 123082 | 0 | 0 | 123082 |
| S/G/Y/R/B/O |
NT_033922 | AL158195 | 49633722 | 3 |   |   | AF440620 | 49001893 | 3 | 123104 | 0 | 0 | 123104 |
| S/G/Y/R/B/O |
NT_033922 | AL161424 | 49756831 | 3 | chr13 | NT_033922 | AL359840 | 49883158 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL161424 | 49756831 | 3 |   |   | AF440620 | 49001893 | 3 | 126251 | 0 | 0 | 126251 |
| S/G/Y/R/B/O |
NT_033922 | AL359840 | 49883158 | 3 | chr13 | NT_033922 | AC007304 | 49969332 | 3 | 86159 | 0 | 0 | 86159 |
| S/G/Y/R/B/O |
NT_033922 | AL359840 | 49883158 | 3 | chr13 | NT_009799 | AC079311 | 17000001 | 1 | 34907 | 0 | 4068 | 38975 |
| S/G/Y/R/B/O |
NT_033922 | AL359840 | 49883158 | 3 |   |   | AF440620 | 17000001 | 3 | 86146 | 0 | 0 | 86146 |
| S/G/Y/R/B/O |
NT_033922 | AC007304 | 49969332 | 3 | chr13 | NT_033922 | AL137880 | 49971770 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AC007304 | 49969332 | 3 | chr13 | NT_009799 | AC079311 | 17000001 | 1 | 34903 | 0 | 4068 | 38971 |
| S/G/Y/R/B/O |
NT_033922 | AC007304 | 49969332 | 3 |   |   | AF440620 | 17000001 | 3 | 120019 | 0 | 0 | 120019 |
| S/G/Y/R/B/O |
NT_033922 | AC007304 | 49969332 | 3 |   |   | AL590066 | 49883158 | 1 | 42218 | 0 | 0 | 42218 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 | chr13 | NT_033922 | AL137881 | 50112246 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 | chr13 | NT_009799 | AC079311 | 17000001 | 1 | 54298 | 4287 | 33456 | 92041 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 |   |   | AC021786 | 49883158 | 1 | 109844 | 0 | 4662 | 114506 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 |   |   | AF440620 | 17000001 | 3 | 25073 | 0 | 0 | 25073 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 |   |   | AL450170 | 26544748 | 3 | 31705 | 0 | 0 | 31705 |
| S/G/Y/R/B/O |
NT_033922 | AL137880 | 49971770 | 3 |   |   | AL590066 | 26544748 | 1 | 57546 | 0 | 0 | 57546 |
| S/G/Y/R/B/O |
NT_033922 | AL137881 | 50112246 | 3 | chr13 | NT_033922 | AL160157 | 50255470 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL137881 | 50112246 | 3 |   |   | AC021786 | 26544748 | 1 | 48258 | 0 | 0 | 48258 |
| S/G/Y/R/B/O |
NT_033922 | AL160157 | 50255470 | 3 | chr13 | NT_033922 | AL583782 | 50382597 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL583782 | 50382597 | 3 | chr13 | NT_033922 | AL157817 | 50382691 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL157817 | 50382691 | 3 | chr13 | NT_033922 | AL137780 | 50558739 | 3 | 0 | 1000 | 0 | 1000 |
| S/G/Y/R/B/O |
NT_033922 | AL157817 | 50382691 | 3 |   |   | AL359261 | 50558739 | 1 | 86592 | 2661 | 38840 | 128093 |
| S/G/Y/R/B/O |
NT_033922 | AL137780 | 50558739 | 3 | chr13 | NT_033922 | AL354820 | 50668254 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033922 | AL354820 | 50668254 | 3 | chr13 | NT_033922 | AL139183 | 50832241 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139183 | 50832241 | 3 | chr13 | NT_033922 | AL136525 | 50881589 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139183 | 50832241 | 3 |   |   | AL359456 | 50668254 | 1 | 13131 | 6868 | 0 | 19999 |
| S/G/Y/R/B/O |
NT_033922 | AL136525 | 50881589 | 3 | chr13 | NT_033922 | AL162377 | 51026829 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL162377 | 51026829 | 3 | chr13 | NT_033922 | AL138821 | 51195833 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL138821 | 51195833 | 3 | chr13 | NT_033922 | AL139082 | 51237402 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033922 | AL139082 | 51237402 | 3 | chr13 | NT_033922 | AL158066 | 51424993 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033922 | AL139082 | 51237402 | 3 |   |   | AL672227 | 51195833 | 2 | 41282 | 0 | 0 | 41282 |
| S/G/Y/R/B/O |
NT_033922 | AL158066 | 51424993 | 3 | chr13 | NT_033922 | AL683825 | 51563094 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033922 | AL158066 | 51424993 | 3 |   |   | AL672227 | 51195833 | 2 | 138171 | 0 | 0 | 138171 |
| S/G/Y/R/B/O |
NT_033922 | AL683825 | 51563094 | 3 |   |   |   |   |   |   |   |   |   |
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