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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033997 | AL163540 | 27025763 | 1 | chr13 | NT_033997 | AC025688 | 27036381 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL163540 | 27025763 | 1 |   |   | AC021029 | 115038156 | 1 | 38634 | 12204 | 27013 | 77851 |
| S/G/Y/R/B/O |
NT_033997 | AL163540 | 27025763 | 1 |   |   | AL355819 | 59932496 | 1 | 35676 | 9865 | 22770 | 68311 |
| S/G/Y/R/B/O |
NT_033997 | AC025688 | 27036381 | 1 | chr13 | NT_033997 | AL591024 | 27076437 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AC025688 | 27036381 | 1 | chr13 | NT_033997 | AL359741 | 27861369 | 3 | 22252 | 0 | 4000 | 26252 |
| S/G/Y/R/B/O |
NT_033997 | AC025688 | 27036381 | 1 | chr13 | NT_033997 | AL589951 | 28001146 | 3 | 42154 | 3886 | 1720 | 47760 |
| S/G/Y/R/B/O |
NT_033997 | AC025688 | 27036381 | 1 | chr13 | NT_033997 | AL592503 | 28054773 | 3 | 32127 | 0 | 3369 | 35496 |
| S/G/Y/R/B/O |
NT_033997 | AC025688 | 27036381 | 1 |   |   | AL135900 | 28323666 | 1 | 38675 | 0 | 3377 | 42052 |
| S/G/Y/R/B/O |
NT_033997 | AL591024 | 27076437 | 2 | chr13 | NT_033997 | AL445262 | 27151158 | 3 | 23107 | 0 | 0 | 23107 |
| S/G/Y/R/B/O |
NT_033997 | AL591024 | 27076437 | 2 | chr13 | NT_033997 | AL356915 | 27174279 | 3 | 54503 | 0 | 0 | 54503 |
| S/G/Y/R/B/O |
NT_033997 | AL445262 | 27151158 | 3 | chr13 | NT_033997 | AL356915 | 27174279 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL356915 | 27174279 | 3 | chr13 | NT_033997 | AL138712 | 27368699 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033997 | AL356915 | 27174279 | 3 | chr13 | NT_033997 | AL591024 | 27076437 | 2 | 54503 | 0 | 0 | 54503 |
| S/G/Y/R/B/O |
NT_033997 | AL138712 | 27368699 | 3 | chr13 | NT_033997 | AL139005 | 27531218 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL139005 | 27531218 | 3 | chr13 | NT_033997 | AL138822 | 27633237 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL138822 | 27633237 | 3 | chr13 | NT_033997 | AL359454 | 27759639 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL359454 | 27759639 | 3 | chr13 | NT_033997 | AL359741 | 27861369 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL359454 | 27759639 | 3 |   |   | AL161895 | 27633237 | 1 | 67033 | 7645 | 13904 | 88582 |
| S/G/Y/R/B/O |
NT_033997 | AL359454 | 27759639 | 3 |   |   | AP002766 | 27861369 | 1 | 56092 | 0 | 18969 | 75061 |
| S/G/Y/R/B/O |
NT_033997 | AL359741 | 27861369 | 3 | chr13 | NT_033997 | AL589951 | 28001146 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL359741 | 27861369 | 3 | chr13 | NT_033997 | AC025688 | 27036381 | 1 | 22252 | 0 | 4000 | 26252 |
| S/G/Y/R/B/O |
NT_033997 | AL359741 | 27861369 | 3 |   |   | AL161895 | 27036381 | 1 | 47535 | 0 | 2762 | 50297 |
| S/G/Y/R/B/O |
NT_033997 | AL359741 | 27861369 | 3 |   |   | AP002766 | 27759639 | 1 | 79509 | 2198 | 2339 | 84046 |
| S/G/Y/R/B/O |
NT_033997 | AL589951 | 28001146 | 3 | chr13 | NT_033997 | AL592503 | 28054773 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL589951 | 28001146 | 3 | chr13 | NT_033997 | AC025688 | 27036381 | 1 | 42154 | 3886 | 1720 | 47760 |
| S/G/Y/R/B/O |
NT_033997 | AL589951 | 28001146 | 3 |   |   | AL135900 | 27036381 | 1 | 16337 | 0 | 0 | 16337 |
| S/G/Y/R/B/O |
NT_033997 | AL592503 | 28054773 | 3 | chr13 | NT_033997 | AL160255 | 28150743 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033997 | AL592503 | 28054773 | 3 | chr13 | NT_033997 | AC025688 | 27036381 | 1 | 32127 | 0 | 3369 | 35496 |
| S/G/Y/R/B/O |
NT_033997 | AL592503 | 28054773 | 3 |   |   | AL135900 | 27036381 | 1 | 98729 | 0 | 0 | 98729 |
| S/G/Y/R/B/O |
NT_033997 | AL160255 | 28150743 | 3 | chr13 | NT_033997 | AL596092 | 28323666 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033997 | AL160255 | 28150743 | 3 |   |   | AL135900 | 28150743 | 1 | 158335 | 0 | 0 | 158335 |
| S/G/Y/R/B/O |
NT_033997 | AL160255 | 28150743 | 3 |   |   | AL355819 | 28150743 | 1 | 25314 | 0 | 0 | 25314 |
| S/G/Y/R/B/O |
NT_033997 | AL596092 | 28323666 | 3 | chr13 | NT_033997 | AL607144 | 28475507 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033997 | AL596092 | 28323666 | 3 |   |   | AL355819 | 27025763 | 1 | 31873 | 9165 | 10522 | 51560 |
| S/G/Y/R/B/O |
NT_033997 | AL607144 | 28475507 | 3 | chr13 | NT_033997 | AL596114 | 28566801 | 3 | 0 | 1993 | 0 | 1993 |
| S/G/Y/R/B/O |
NT_033997 | AL607144 | 28475507 | 3 |   |   | AL391599 | 28475507 | 1 | 31071 | 13504 | 0 | 44575 |
| S/G/Y/R/B/O |
NT_033997 | AL596114 | 28566801 | 3 | chr13 | NT_033997 | AL163532 | 28737993 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL596114 | 28566801 | 3 | chr13 | NT_033997 | AL353601 | 29972519 | 1 | 57271 | 2012 | 13375 | 72658 |
| S/G/Y/R/B/O |
NT_033997 | AL596114 | 28566801 | 3 |   |   | AC053492 | 28566801 | 1 | 31645 | 6286 | 13520 | 51451 |
| S/G/Y/R/B/O |
NT_033997 | AL596114 | 28566801 | 3 |   |   | AL391599 | 29972519 | 1 | 58281 | 14693 | 0 | 72974 |
| S/G/Y/R/B/O |
NT_033997 | AL163532 | 28737993 | 3 | chr13 | NT_033997 | AL158193 | 28756981 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033997 | AL163532 | 28737993 | 3 | chr13 | NT_033997 | AL353601 | 29972519 | 1 | 19898 | 0 | 0 | 19898 |
| S/G/Y/R/B/O |
NT_033997 | AL163532 | 28737993 | 3 |   |   | AC053492 | 28475507 | 1 | 15988 | 0 | 0 | 15988 |
| S/G/Y/R/B/O |
NT_033997 | AL158193 | 28756981 | 3 | chr13 | NT_033997 | AL138684 | 28927877 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL158193 | 28756981 | 3 | chr13 | NT_033997 | AL353601 | 29972519 | 1 | 43703 | 5210 | 2321 | 51234 |
| S/G/Y/R/B/O |
NT_033997 | AL158193 | 28756981 | 3 |   |   | AC053492 | 29972519 | 1 | 45473 | 7485 | 19660 | 72618 |
| S/G/Y/R/B/O |
NT_033997 | AL138684 | 28927877 | 3 | chr13 | NT_033997 | AL139188 | 28972790 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL138684 | 28927877 | 3 |   |   | AL359818 | 28972790 | 2 | 20420 | 0 | 0 | 20420 |
| S/G/Y/R/B/O |
NT_033997 | AL139188 | 28972790 | 3 | chr13 | NT_033997 | AL354674 | 29134228 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL139188 | 28972790 | 3 |   |   | AL359818 | 29134228 | 2 | 161534 | 0 | 0 | 161534 |
| S/G/Y/R/B/O |
NT_033997 | AL354674 | 29134228 | 3 | chr13 | NT_033997 | AL157770 | 29271475 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL354674 | 29134228 | 3 |   |   | AL359818 | 29271475 | 2 | 19859 | 0 | 0 | 19859 |
| S/G/Y/R/B/O |
NT_033997 | AL157770 | 29271475 | 3 | chr13 | NT_033997 | AL356750 | 29332990 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL157770 | 29271475 | 3 |   |   | AL162380 | 29271475 | 1 | 56133 | 0 | 0 | 56133 |
| S/G/Y/R/B/O |
NT_033997 | AL356750 | 29332990 | 3 | chr13 | NT_033997 | AL161893 | 29515193 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033997 | AL356750 | 29332990 | 3 |   |   | AL162380 | 29515193 | 1 | 51716 | 2499 | 22046 | 76261 |
| S/G/Y/R/B/O |
NT_033997 | AL161893 | 29515193 | 3 | chr13 | NT_033997 | AL353648 | 29577136 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL353648 | 29577136 | 3 | chr13 | NT_033997 | AL138681 | 29710902 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033997 | AL138681 | 29710902 | 3 | chr13 | NT_033997 | AL512642 | 29835164 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033997 | AL512642 | 29835164 | 3 | chr13 | NT_033997 | AL353601 | 29972519 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 | chr13 | NT_033997 | AL158193 | 28756981 | 3 | 43703 | 5210 | 2321 | 51234 |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 | chr13 | NT_033997 | AL163532 | 28737993 | 3 | 19898 | 0 | 0 | 19898 |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 | chr13 | NT_033997 | AL596114 | 28566801 | 3 | 57271 | 2012 | 13375 | 72658 |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 |   |   | AC053492 | 29710902 | 1 | 29301 | 9645 | 10910 | 49856 |
| S/G/Y/R/B/O |
NT_033997 | AL353601 | 29972519 | 1 |   |   | AL391599 | 28737993 | 1 | 29072 | 4670 | 0 | 33742 |
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