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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 | chr21 | NT_029490 | AF254983 | 7799693 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 |   |   | AC005283 | 215586348 | 3 | 14340 | 0 | 0 | 14340 |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 |   |   | AC027723 | 215586348 | 1 | 37800 | 4229 | 8117 | 50146 |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 |   |   | AL078476 | 215586348 | 3 | 43091 | 0 | 0 | 43091 |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 |   |   | AL139386 | 215586348 | 1 | 47280 | 0 | 31953 | 79233 |
| S/G/Y/R/B/O |
NT_029490 | AL078471 | 7719001 | 3 |   |   | AL163201 | 215586348 | 3 | 80306 | 0 | 0 | 80306 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 | chr21 | NT_029490 | AP003900 | 7914894 | 3 | 42900 | 0 | 0 | 42900 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AC027723 | 215586348 | 1 | 18487 | 3730 | 3252 | 25469 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AL078476 | 215586348 | 3 | 95001 | 0 | 0 | 95001 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AL139386 | 215586348 | 1 | 58445 | 0 | 7432 | 65877 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AL158811 | 215586348 | 1 | 75059 | 4613 | 59178 | 138850 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AL161418 | 215586348 | 1 | 61932 | 0 | 38714 | 100646 |
| S/G/Y/R/B/O |
NT_029490 | AF254983 | 7799693 | 3 |   |   | AL163201 | 215586348 | 3 | 190237 | 0 | 0 | 190237 |
| S/G/Y/R/B/O |
NT_029490 | AP003900 | 7914894 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_029490 | AP003900 | 7914894 | 3 |   |   | AL158811 | 7799693 | 1 | 51499 | 4714 | 14748 | 70961 |
| S/G/Y/R/B/O |
NT_029490 | AP003900 | 7914894 | 3 |   |   | AL163201 | 7799693 | 3 | 85170 | 0 | 0 | 85170 |
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