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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030187 | AP001612 | 39542537 | 3 | chr21 | NT_030187 | AP001613 | 39544508 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030187 | AP001613 | 39544508 | 3 | chr21 | NT_030187 | AP001614 | 39558367 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030187 | AP001613 | 39544508 | 3 |   |   | AL163288 | 37683508 | 3 | 14513 | 0 | 0 | 14513 |
| S/G/Y/R/B/O |
NT_030187 | AP001613 | 39544508 | 3 |   |   | AP001743 | 37683508 | 3 | 14513 | 0 | 0 | 14513 |
| S/G/Y/R/B/O |
NT_030187 | AP001614 | 39558367 | 3 | chr21 | NT_030187 | AP001615 | 39640092 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030187 | AP001614 | 39558367 | 3 |   |   | AL163288 | 37683508 | 3 | 81896 | 0 | 0 | 81896 |
| S/G/Y/R/B/O |
NT_030187 | AP001614 | 39558367 | 3 |   |   | AP001743 | 37683508 | 3 | 81896 | 0 | 0 | 81896 |
| S/G/Y/R/B/O |
NT_030187 | AP001615 | 39640092 | 3 | chr21 | NT_030187 | AP001616 | 39726981 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030187 | AP001615 | 39640092 | 3 |   |   | AL163288 | 37683508 | 3 | 124411 | 0 | 0 | 124411 |
| S/G/Y/R/B/O |
NT_030187 | AP001615 | 39640092 | 3 |   |   | AP001743 | 37683508 | 3 | 124411 | 0 | 0 | 124411 |
| S/G/Y/R/B/O |
NT_030187 | AP001616 | 39726981 | 3 | chr21 | NT_030187 | AP002955 | 39728976 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030187 | AP001616 | 39726981 | 3 |   |   | AL163288 | 37683508 | 3 | 16636 | 0 | 0 | 16636 |
| S/G/Y/R/B/O |
NT_030187 | AP001616 | 39726981 | 3 |   |   | AP001743 | 37683508 | 3 | 16636 | 0 | 0 | 16636 |
| S/G/Y/R/B/O |
NT_030187 | AP002955 | 39728976 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030187 | AP002955 | 39728976 | 3 |   |   | AL163288 | 37683508 | 3 | 32795 | 0 | 0 | 32795 |
| S/G/Y/R/B/O |
NT_030187 | AP002955 | 39728976 | 3 |   |   | AP001504 | 37683508 | 3 | 23584 | 0 | 0 | 23584 |
| S/G/Y/R/B/O |
NT_030187 | AP002955 | 39728976 | 3 |   |   | AP001743 | 37683508 | 3 | 32795 | 0 | 0 | 32795 |
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