Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_009759	NT_009738	NT_024413	NT_033253	NT_009731	NT_009702	NT_009714	NT_033252
NT_027128	NT_024397	NT_030810	NT_009700	NT_030814	NT_024382	NT_030804	NT_026404
NT_009666	NT_009471	NT_033254	NT_033256	NT_033255	NT_033247	NT_024380	NT_025869
NT_024352	NT_009486	NT_024370	NT_028332	NT_009781	NT_030809	NT_009784	NT_009785
NT_009526	NT_026397	NT_024417	NT_026409	NT_009782	NT_009609	NT_030118	NT_009563
NT_009458	NT_009485	NT_009509	NT_009410	NT_024362	NT_028337	NT_009441	NT_024372
NT_009432	NT_027130	NT_009711	NT_009506	NT_030813	NT_027129	NT_009616	NT_009561
NT_029419	NT_009540	NT_009528	NT_015310	NT_009456	NT_029428	NT_024375	NT_009593
NT_033251	NT_024460	NT_024381	NT_024354	NT_030815	NT_024373	NT_009551	NT_019546
NT_029418	NT_024420	NT_024356	NT_026408	NT_024480	NT_026396	NT_024454	NT_025864
NT_009538	NT_030122	NT_024363	NT_029420	NT_024400	NT_009729	NT_019555	NT_009447
NT_009513	NT_009690	NT_015316	NT_030816	NT_009575	NT_024394	NT_033258	NT_009681
NT_009743	NT_033257	NT_024383	NT_030807	NT_030124	NT_009660	NT_033245	NT_009770
NT_009601	NT_009654	NT_030806	NT_029421	NT_009436	NT_009775	NT_028327	NT_009487
NT_009438	NT_009464	NT_033248	NT_009755	NT_009534	NT_009482	NT_024376	NT_009523
NT_024369	NT_033246	NT_033250	NT_027131	NT_009455	NT_024477

NT_009471

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_009471	AC069208	24894713	3	chr12	NT_009471	AC092773	25053299	1	8563	0	0	8563
S/G/Y/R/B/O	NT_009471	AC069208	24894713	3			AC034120	16451929	1	67647	12544	3351	83542
S/G/Y/R/B/O	NT_009471	AC069208	24894713	3			AC087322	16451929	1	20009	9211	17205	46425
S/G/Y/R/B/O	NT_009471	AC092773	25053299	1	chr12	NT_009471	AC092830	25061882	3	157951	0	0	157951
S/G/Y/R/B/O	NT_009471	AC092773	25053299	1	chr12	NT_009471	AC087312	25226851	3	24515	0	0	24515
S/G/Y/R/B/O	NT_009471	AC092773	25053299	1			AC034120	25053299	1	78339	12180	1438	91957
S/G/Y/R/B/O	NT_009471	AC092830	25061882	3	chr12	NT_009471	AC087312	25226851	3	31503	0	0	31503
S/G/Y/R/B/O	NT_009471	AC092830	25061882	3			AC034120	25061882	1	49168	6768	1438	57374
S/G/Y/R/B/O	NT_009471	AC087312	25226851	3	chr12	NT_009471	AC093194	25343839	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC087312	25226851	3	chr12	NT_009471	AC092773	25053299	1	24515	0	0	24515
S/G/Y/R/B/O	NT_009471	AC087312	25226851	3			AC024025	25053299	1	99415	1649	8880	109944
S/G/Y/R/B/O	NT_009471	AC093194	25343839	3	chr12	NT_009471	AC023796	25361213	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009471	AC093194	25343839	3			AC024025	25361213	1	19207	0	1438	20645
S/G/Y/R/B/O	NT_009471	AC023796	25361213	3	chr12	NT_009471	AC092867	25534555	3	149155	0	0	149155
S/G/Y/R/B/O	NT_009471	AC023796	25361213	3			AC024025	25361213	1	49139	0	0	49139
S/G/Y/R/B/O	NT_009471	AC092867	25534555	3	chr12	NT_009471	AC026310	25580633	3	39774	0	0	39774
S/G/Y/R/B/O	NT_009471	AC092867	25534555	3			AC024025	25361213	1	15399	2387	0	17786
S/G/Y/R/B/O	NT_009471	AC026310	25580633	3	chr12	NT_009471	AC023510	25664780	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC026310	25580633	3	chr12	NT_009471	AC025889	25817698	1	80481	2302	2405	85188
S/G/Y/R/B/O	NT_009471	AC026310	25580633	3			AC087243	25817698	3	21971	0	0	21971
S/G/Y/R/B/O	NT_009471	AC023510	25664780	3	chr12	NT_009471	AC025889	25817698	1	116900	5812	784	123496
S/G/Y/R/B/O	NT_009471	AC025889	25817698	1	chr12	NT_009471	AC092794	25819949	1	23898	2001	6400	32299
S/G/Y/R/B/O	NT_009471	AC025889	25817698	1	chr12	NT_009471	AC026310	25580633	3	80481	2302	2405	85188
S/G/Y/R/B/O	NT_009471	AC025889	25817698	1			AC087243	25580633	3	17855	2291	0	20146
S/G/Y/R/B/O	NT_009471	AC092794	25819949	1	chr12	NT_009471	AC087239	25905171	3	33945	0	0	33945
S/G/Y/R/B/O	NT_009471	AC087239	25905171	3	chr12	NT_009471	AC092451	26083177	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC087239	25905171	3			AC024445	25905171	1	50759	2388	0	53147
S/G/Y/R/B/O	NT_009471	AC092451	26083177	3	chr12	NT_009471	AC022367	26155477	3	2005	0	0	2005
S/G/Y/R/B/O	NT_009471	AC092451	26083177	3			AC024445	26155477	1	69221	0	1043	70264
S/G/Y/R/B/O	NT_009471	AC022367	26155477	3	chr12	NT_009471	AC044811	26328656	1	119187	6782	0	125969
S/G/Y/R/B/O	NT_009471	AC022367	26155477	3	chr12	NT_009471	AC094009	26334708	1	90714	0	14002	104716
S/G/Y/R/B/O	NT_009471	AC022367	26155477	3			AC024445	26155477	1	39202	0	0	39202
S/G/Y/R/B/O	NT_009471	AC044811	26328656	1	chr12	NT_009471	AC094009	26334708	1	130055	6499	15866	152420
S/G/Y/R/B/O	NT_009471	AC044811	26328656	1	chr12	NT_009471	AC019209	26398653	3	19236	0	1379	20615
S/G/Y/R/B/O	NT_009471	AC094009	26334708	1	chr12	NT_009471	AC019209	26398653	3	0	0	27074	27074
S/G/Y/R/B/O	NT_009471	AC094009	26334708	1	chr12	NT_009471	AC022367	26155477	3	90714	0	14002	104716
S/G/Y/R/B/O	NT_009471	AC094009	26334708	1			AC021868	26398653	3	13228	0	0	13228
S/G/Y/R/B/O	NT_009471	AC019209	26398653	3	chr12	NT_009471	AC024225	26566146	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC019209	26398653	3	chr12	NT_009471	AC044811	26328656	1	19236	0	1379	20615
S/G/Y/R/B/O	NT_009471	AC019209	26398653	3			AC021868	26328656	3	168213	0	0	168213
S/G/Y/R/B/O	NT_009471	AC019209	26398653	3			AC087256	26328656	3	149543	0	0	149543
S/G/Y/R/B/O	NT_009471	AC024225	26566146	3	chr12	NT_009471	AC055707	26623355	3	2020	0	0	2020
S/G/Y/R/B/O	NT_009471	AC024225	26566146	3			AC025637	26334708	1	39420	8457	1040	48917
S/G/Y/R/B/O	NT_009471	AC055707	26623355	3	chr12	NT_009471	AC022509	26759701	3	0	1997	0	1997
S/G/Y/R/B/O	NT_009471	AC055707	26623355	3			AC025637	26566146	1	118060	2194	0	120254
S/G/Y/R/B/O	NT_009471	AC022509	26759701	3	chr12	NT_009471	AC055720	26961932	3	0	0	204	204
S/G/Y/R/B/O	NT_009471	AC055720	26961932	3	chr12	NT_009471	AC024145	27058397	3	2008	0	0	2008
S/G/Y/R/B/O	NT_009471	AC024145	27058397	3	chr12	NT_009471	AC023425	27132160	3	0	1977	0	1977
S/G/Y/R/B/O	NT_009471	AC024145	27058397	3			AC026862	27132160	1	25071	1494	4356	30921
S/G/Y/R/B/O	NT_009471	AC023425	27132160	3	chr12	NT_009471	AC023051	27312008	3	5606	0	0	5606
S/G/Y/R/B/O	NT_009471	AC023425	27132160	3			AC026862	27058397	1	34980	20095	37907	92982
S/G/Y/R/B/O	NT_009471	AC023051	27312008	3	chr12	NT_009471	AC024093	27492332	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC023051	27312008	3			AC018393	27058397	1	150211	1523	2288	154022
S/G/Y/R/B/O	NT_009471	AC024093	27492332	3	chr12	NT_009471	AC024896	27639199	1	30321	0	0	30321
S/G/Y/R/B/O	NT_009471	AC024093	27492332	3	chr12	NT_009471	AC023261	27668495	1	19528	0	0	19528
S/G/Y/R/B/O	NT_009471	AC024093	27492332	3			AC018393	27132160	1	12852	2185	0	15037
S/G/Y/R/B/O	NT_009471	AC024896	27639199	1	chr12	NT_009471	AC023261	27668495	1	132162	4730	0	136892
S/G/Y/R/B/O	NT_009471	AC024896	27639199	1	chr12	NT_009471	AC092747	27696208	3	22144	0	48198	70342
S/G/Y/R/B/O	NT_009471	AC024896	27639199	1			AC025970	27492332	1	34949	0	8164	43113
S/G/Y/R/B/O	NT_009471	AC023261	27668495	1	chr12	NT_009471	AC092747	27696208	3	71530	7698	1219	80447
S/G/Y/R/B/O	NT_009471	AC023261	27668495	1	chr12	NT_009471	AC024093	27492332	3	19528	0	0	19528
S/G/Y/R/B/O	NT_009471	AC023261	27668495	1			AC025970	27639199	1	30581	2078	1218	33877
S/G/Y/R/B/O	NT_009471	AC092747	27696208	3	chr12	NT_009471	AC092827	27858608	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC092747	27696208	3	chr12	NT_009471	AC024896	27639199	1	22144	0	48198	70342
S/G/Y/R/B/O	NT_009471	AC092747	27696208	3			AC025970	27639199	1	139324	1906	11620	152850
S/G/Y/R/B/O	NT_009471	AC092827	27858608	3	chr12	NT_009471	AC092829	27974244	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC092827	27858608	3	chr12	NT_009471	AC092453	28089019	1	50110	0	0	50110
S/G/Y/R/B/O	NT_009471	AC092827	27858608	3			AC021737	107163178	1	37117	0	11047	48164
S/G/Y/R/B/O	NT_009471	AC092829	27974244	3	chr12	NT_009471	AC092453	28089019	1	87565	2381	13212	103158
S/G/Y/R/B/O	NT_009471	AC092829	27974244	3			AC016008	28089019	1	44227	0	0	44227
S/G/Y/R/B/O	NT_009471	AC092829	27974244	3			AC021737	28089019	1	104763	4399	4783	113945
S/G/Y/R/B/O	NT_009471	AC092453	28089019	1	chr12	NT_009471	AC068794	28101246	3	14263	0	0	14263
S/G/Y/R/B/O	NT_009471	AC092453	28089019	1	chr12	NT_009471	AC092827	27858608	3	50110	0	0	50110
S/G/Y/R/B/O	NT_009471	AC092453	28089019	1			AC016008	28089019	1	39198	4906	0	44104
S/G/Y/R/B/O	NT_009471	AC092453	28089019	1			AC021737	28089019	1	44484	4399	33227	82110
S/G/Y/R/B/O	NT_009471	AC068794	28101246	3	chr12	NT_009471	AC087257	28114929	3	108813	0	0	108813
S/G/Y/R/B/O	NT_009471	AC068794	28101246	3			AC016008	27974244	1	106799	8378	0	115177
S/G/Y/R/B/O	NT_009471	AC068794	28101246	3			AC021971	27974244	1	74783	7148	0	81931
S/G/Y/R/B/O	NT_009471	AC087257	28114929	3	chr12	NT_009471	AC009509	28285045	3	16828	0	0	16828
S/G/Y/R/B/O	NT_009471	AC087257	28114929	3			AC016008	28285045	1	68498	3459	0	71957
S/G/Y/R/B/O	NT_009471	AC087257	28114929	3			AC021971	28285045	1	122681	5411	0	128092
S/G/Y/R/B/O	NT_009471	AC009509	28285045	3	chr12	NT_009471	AC009511	28460907	3	0	0	206	206
S/G/Y/R/B/O	NT_009471	AC009509	28285045	3			AC021971	28460907	1	16459	0	0	16459
S/G/Y/R/B/O	NT_009471	AC009511	28460907	3	chr12	NT_009471	AC008011	28521083	3	0	0	197	197
S/G/Y/R/B/O	NT_009471	AC008011	28521083	3	chr12	NT_009471	AC022363	28678154	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC008011	28521083	3			AC016393	28460907	1	20842	36975	24294	82111
S/G/Y/R/B/O	NT_009471	AC022363	28678154	3	chr12	NT_009471	AC022364	28792899	3	0	0	205	205
S/G/Y/R/B/O	NT_009471	AC022363	28678154	3	chr8	NT_023709	AF188024	135047388	2	106703	0	0	106703
S/G/Y/R/B/O	NT_009471	AC022363	28678154	3			AC016393	135047388	1	12946	0	0	12946
S/G/Y/R/B/O	NT_009471	AC022364	28792899	3	chr12	NT_009471	AC022079	28866251	3	0	0	199	199
S/G/Y/R/B/O	NT_009471	AC022079	28866251	3	chr12	NT_009471	AC024939	29047245	3	0	0	197	197
S/G/Y/R/B/O	NT_009471	AC022079	28866251	3			AC114968	29047245	1	71447	0	4846	76293
S/G/Y/R/B/O	NT_009471	AC024939	29047245	3	chr12	NT_009471	AC046131	29105748	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC024939	29047245	3			AC073872	28866251	1	24962	0	0	24962
S/G/Y/R/B/O	NT_009471	AC024939	29047245	3			AC114968	28866251	1	45860	0	0	45860
S/G/Y/R/B/O	NT_009471	AC046131	29105748	3	chr12	NT_009471	AC084754	29216740	3	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC046131	29105748	3			AC073872	28866251	1	64575	1186	41771	107532
S/G/Y/R/B/O	NT_009471	AC084754	29216740	3	chr12	NT_009471	AC022081	29393054	3	19409	0	0	19409
S/G/Y/R/B/O	NT_009471	AC084754	29216740	3			AC053493	29393054	1	117778	2363	0	120141
S/G/Y/R/B/O	NT_009471	AC022081	29393054	3	chr12	NT_009471	AC024255	29516819	3	0	0	242	242
S/G/Y/R/B/O	NT_009471	AC022081	29393054	3	chr12	NT_009471	AC022651	30187692	1	86881	0	0	86881
S/G/Y/R/B/O	NT_009471	AC022081	29393054	3			AC053493	29516819	1	37438	0	0	37438
S/G/Y/R/B/O	NT_009471	AC024255	29516819	3	chr12	NT_009471	AC012150	29681813	3	0	0	125	125
S/G/Y/R/B/O	NT_009471	AC024255	29516819	3	chr12	NT_009471	AC022651	30187692	1	56318	2283	0	58601
S/G/Y/R/B/O	NT_009471	AC012150	29681813	3	chr12	NT_009471	AC009318	29908993	3	4454	0	0	4454
S/G/Y/R/B/O	NT_009471	AC012150	29681813	3			AC025736	29516819	1	109188	7655	25265	142108
S/G/Y/R/B/O	NT_009471	AC009318	29908993	3	chr12	NT_009471	AC012151	30107956	3	0	604	0	604
S/G/Y/R/B/O	NT_009471	AC009318	29908993	3			AC079846	30107956	1	16295	0	21277	37572
S/G/Y/R/B/O	NT_009471	AC012151	30107956	3	chr12	NT_009471	AC022651	30187692	1	0	0	0	0
S/G/Y/R/B/O	NT_009471	AC012151	30107956	3			AC079846	29908993	1	45982	8753	4861	59596
S/G/Y/R/B/O	NT_009471	AC012151	30107956	3			AL157824	29908993	1	17544	0	0	17544
S/G/Y/R/B/O	NT_009471	AC022651	30187692	1
S/G/Y/R/B/O	NT_009471	AC022651	30187692	1	chr12	NT_009471	AC022081	29393054	3	86881	0	0	86881
S/G/Y/R/B/O	NT_009471	AC022651	30187692	1	chr12	NT_009471	AC024255	29516819	3	56318	2283	0	58601