|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_009711 | AC079850 | 63116338 | 1 | chr12 | NT_009711 | AC020647 | 63117319 | 3 | 45316 | 13649 | 42018 | 100983 |
| S/G/Y/R/B/O |
NT_009711 | AC079850 | 63116338 | 1 | chr12 | NT_009711 | AC013638 | 63323676 | 1 | 21784 | 647 | 14552 | 36983 |
| S/G/Y/R/B/O |
NT_009711 | AC020647 | 63117319 | 3 | chr12 | NT_009711 | AC090439 | 63271941 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC020647 | 63117319 | 3 | chr12 | NT_009711 | AC013638 | 63323676 | 1 | 38457 | 0 | 0 | 38457 |
| S/G/Y/R/B/O |
NT_009711 | AC090439 | 63271941 | 1 | chr12 | NT_009711 | AC013638 | 63323676 | 1 | 38720 | 0 | 27014 | 65734 |
| S/G/Y/R/B/O |
NT_009711 | AC090439 | 63271941 | 1 | chr12 | NT_009711 | AC078789 | 63492399 | 3 | 73638 | 0 | 0 | 73638 |
| S/G/Y/R/B/O |
NT_009711 | AC090439 | 63271941 | 1 | chr12 | NT_009711 | AC078872 | 63325814 | 3 | 42751 | 0 | 0 | 42751 |
| S/G/Y/R/B/O |
NT_009711 | AC090439 | 63271941 | 1 |   |   | AC016169 | 63323676 | 1 | 65583 | 2418 | 0 | 68001 |
| S/G/Y/R/B/O |
NT_009711 | AC013638 | 63323676 | 1 | chr12 | NT_009711 | AC078872 | 63325814 | 3 | 102473 | 0 | 27046 | 129519 |
| S/G/Y/R/B/O |
NT_009711 | AC013638 | 63323676 | 1 | chr12 | NT_009711 | AC020647 | 63117319 | 3 | 38457 | 0 | 0 | 38457 |
| S/G/Y/R/B/O |
NT_009711 | AC013638 | 63323676 | 1 | chr12 | NT_009711 | AC078789 | 63492399 | 3 | 38859 | 0 | 0 | 38859 |
| S/G/Y/R/B/O |
NT_009711 | AC013638 | 63323676 | 1 | chr12 | NT_009711 | AC079850 | 63116338 | 1 | 21784 | 647 | 14552 | 36983 |
| S/G/Y/R/B/O |
NT_009711 | AC013638 | 63323676 | 1 |   |   | AC016169 | 63325814 | 1 | 17628 | 0 | 27015 | 44643 |
| S/G/Y/R/B/O |
NT_009711 | AC078872 | 63325814 | 3 | chr12 | NT_009711 | AC078789 | 63492399 | 3 | 79632 | 0 | 0 | 79632 |
| S/G/Y/R/B/O |
NT_009711 | AC078872 | 63325814 | 3 | chr12 | NT_009711 | AC090439 | 63271941 | 1 | 42751 | 0 | 0 | 42751 |
| S/G/Y/R/B/O |
NT_009711 | AC078872 | 63325814 | 3 |   |   | AC016169 | 63323676 | 1 | 104500 | 0 | 0 | 104500 |
| S/G/Y/R/B/O |
NT_009711 | AC078789 | 63492399 | 3 | chr12 | NT_009711 | AC025077 | 63610320 | 1 | 48476 | 1491 | 1095 | 51062 |
| S/G/Y/R/B/O |
NT_009711 | AC078789 | 63492399 | 3 | chr12 | NT_009711 | AC013638 | 63323676 | 1 | 38859 | 0 | 0 | 38859 |
| S/G/Y/R/B/O |
NT_009711 | AC078789 | 63492399 | 3 | chr12 | NT_009711 | AC090439 | 63271941 | 1 | 73638 | 0 | 0 | 73638 |
| S/G/Y/R/B/O |
NT_009711 | AC078789 | 63492399 | 3 |   |   | AC016169 | 63323676 | 1 | 97795 | 2412 | 0 | 100207 |
| S/G/Y/R/B/O |
NT_009711 | AC025077 | 63610320 | 1 | chr12 | NT_009711 | AC048342 | 63628481 | 1 | 22235 | 2678 | 4181 | 29094 |
| S/G/Y/R/B/O |
NT_009711 | AC025077 | 63610320 | 1 | chr12 | NT_009711 | AC018658 | 63651756 | 1 | 53266 | 7659 | 5389 | 66314 |
| S/G/Y/R/B/O |
NT_009711 | AC025077 | 63610320 | 1 | chr12 | NT_009711 | AC025838 | 63631129 | 1 | 15690 | 0 | 0 | 15690 |
| S/G/Y/R/B/O |
NT_009711 | AC025077 | 63610320 | 1 | chr12 | NT_009711 | AC079035 | 63680011 | 3 | 15472 | 0 | 0 | 15472 |
| S/G/Y/R/B/O |
NT_009711 | AC048342 | 63628481 | 1 | chr12 | NT_009711 | AC025838 | 63631129 | 1 | 22448 | 0 | 2669 | 25117 |
| S/G/Y/R/B/O |
NT_009711 | AC048342 | 63628481 | 1 | chr12 | NT_009711 | AC018658 | 63651756 | 1 | 100233 | 4303 | 20701 | 125237 |
| S/G/Y/R/B/O |
NT_009711 | AC048342 | 63628481 | 1 | chr12 | NT_009711 | AC079035 | 63680011 | 3 | 88693 | 6905 | 18128 | 113726 |
| S/G/Y/R/B/O |
NT_009711 | AC025838 | 63631129 | 1 | chr12 | NT_009711 | AC018658 | 63651756 | 1 | 53188 | 0 | 2666 | 55854 |
| S/G/Y/R/B/O |
NT_009711 | AC025838 | 63631129 | 1 | chr12 | NT_009711 | AC025077 | 63610320 | 1 | 15690 | 0 | 0 | 15690 |
| S/G/Y/R/B/O |
NT_009711 | AC025838 | 63631129 | 1 | chr12 | NT_009711 | AC079035 | 63680011 | 3 | 128390 | 4339 | 5940 | 138669 |
| S/G/Y/R/B/O |
NT_009711 | AC018658 | 63651756 | 1 | chr12 | NT_009711 | AC079035 | 63680011 | 3 | 117674 | 0 | 0 | 117674 |
| S/G/Y/R/B/O |
NT_009711 | AC018658 | 63651756 | 1 | chr12 | NT_009711 | AC025077 | 63610320 | 1 | 53266 | 7659 | 5389 | 66314 |
| S/G/Y/R/B/O |
NT_009711 | AC018658 | 63651756 | 1 | chr12 | NT_009711 | AC048342 | 63628481 | 1 | 100233 | 4303 | 20701 | 125237 |
| S/G/Y/R/B/O |
NT_009711 | AC079035 | 63680011 | 3 | chr12 | NT_009711 | AC026115 | 63883988 | 3 | 2015 | 0 | 0 | 2015 |
| S/G/Y/R/B/O |
NT_009711 | AC079035 | 63680011 | 3 | chr12 | NT_009711 | AC025077 | 63610320 | 1 | 15472 | 0 | 0 | 15472 |
| S/G/Y/R/B/O |
NT_009711 | AC079035 | 63680011 | 3 | chr12 | NT_009711 | AC025838 | 63631129 | 1 | 128390 | 4339 | 5940 | 138669 |
| S/G/Y/R/B/O |
NT_009711 | AC079035 | 63680011 | 3 | chr12 | NT_009711 | AC048342 | 63628481 | 1 | 88693 | 6905 | 18128 | 113726 |
| S/G/Y/R/B/O |
NT_009711 | AC026115 | 63883988 | 3 | chr12 | NT_009711 | AC048341 | 63981518 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_009711 | AC026115 | 63883988 | 3 |   |   | AC025658 | 63628481 | 1 | 20732 | 0 | 0 | 20732 |
| S/G/Y/R/B/O |
NT_009711 | AC048341 | 63981518 | 3 | chr12 | NT_009711 | AC025264 | 64046916 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC048341 | 63981518 | 3 |   |   | AC025658 | 63680011 | 1 | 49615 | 7860 | 0 | 57475 |
| S/G/Y/R/B/O |
NT_009711 | AC048341 | 63981518 | 3 |   |   | AC079158 | 63883988 | 1 | 28766 | 0 | 0 | 28766 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 | chr12 | NT_009711 | AC023359 | 64238459 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 | chr12 | NT_009711 | AC026104 | 65479031 | 1 | 13289 | 0 | 0 | 13289 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 |   |   | AC025658 | 64238459 | 1 | 28610 | 2939 | 11961 | 43510 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 |   |   | AC026677 | 65479031 | 1 | 50201 | 0 | 89731 | 139932 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 |   |   | AC036197 | 65479031 | 1 | 165917 | 0 | 0 | 165917 |
| S/G/Y/R/B/O |
NT_009711 | AC025264 | 64046916 | 3 |   |   | AC079158 | 65479031 | 1 | 54261 | 0 | 0 | 54261 |
| S/G/Y/R/B/O |
NT_009711 | AC023359 | 64238459 | 3 | chr12 | NT_009711 | AC078814 | 64279180 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC023359 | 64238459 | 3 | chr12 | NT_009711 | AC017029 | 65469903 | 1 | 33311 | 0 | 0 | 33311 |
| S/G/Y/R/B/O |
NT_009711 | AC023359 | 64238459 | 3 | chr12 | NT_009711 | AC026104 | 65479031 | 1 | 19467 | 0 | 6482 | 25949 |
| S/G/Y/R/B/O |
NT_009711 | AC023359 | 64238459 | 3 |   |   | AC036197 | 65479031 | 1 | 38465 | 0 | 0 | 38465 |
| S/G/Y/R/B/O |
NT_009711 | AC078814 | 64279180 | 3 | chr12 | NT_009711 | AC025525 | 64468649 | 1 | 53910 | 1795 | 0 | 55705 |
| S/G/Y/R/B/O |
NT_009711 | AC078814 | 64279180 | 3 | chr12 | NT_009711 | AC017029 | 65469903 | 1 | 109102 | 0 | 0 | 109102 |
| S/G/Y/R/B/O |
NT_009711 | AC078814 | 64279180 | 3 | chr12 | NT_009711 | AC026104 | 65479031 | 1 | 95794 | 4237 | 18674 | 118705 |
| S/G/Y/R/B/O |
NT_009711 | AC025525 | 64468649 | 1 | chr12 | NT_009711 | AC053489 | 64475307 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC025525 | 64468649 | 1 | chr12 | NT_009711 | AC026116 | 65292536 | 3 | 37265 | 2755 | 0 | 40020 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 | chr12 | NT_009711 | AC084357 | 64494904 | 3 | 0 | 0 | 1421 | 1421 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 | chr12 | NT_009711 | AC020609 | 65573638 | 1 | 23268 | 0 | 3104 | 26372 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 | chr12 | NT_009711 | AC079263 | 65128835 | 3 | 100309 | 1499 | 60266 | 162074 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 |   |   | AC026105 | 65573638 | 1 | 24862 | 0 | 5834 | 30696 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 |   |   | AC027667 | 65573638 | 1 | 16233 | 0 | 8295 | 24528 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 |   |   | AC068778 | 65573638 | 1 | 22804 | 2134 | 31829 | 56767 |
| S/G/Y/R/B/O |
NT_009711 | AC053489 | 64475307 | 1 |   |   | AC078827 | 65573638 | 1 | 23735 | 0 | 11933 | 35668 |
| S/G/Y/R/B/O |
NT_009711 | AC084357 | 64494904 | 3 | chr12 | NT_009711 | AC079866 | 64681489 | 1 | 14942 | 1934 | 0 | 16876 |
| S/G/Y/R/B/O |
NT_009711 | AC084357 | 64494904 | 3 |   |   | AC055122 | 64475307 | 1 | 39748 | 0 | 15414 | 55162 |
| S/G/Y/R/B/O |
NT_009711 | AC084357 | 64494904 | 3 |   |   | AC092972 | 64681489 | 1 | 23900 | 0 | 15633 | 39533 |
| S/G/Y/R/B/O |
NT_009711 | AC084357 | 64494904 | 3 |   |   | AL451067 | 64681489 | 1 | 116497 | 0 | 4621 | 121118 |
| S/G/Y/R/B/O |
NT_009711 | AC079866 | 64681489 | 1 | chr12 | NT_009711 | AC020611 | 64697272 | 3 | 50928 | 2204 | 38249 | 91381 |
| S/G/Y/R/B/O |
NT_009711 | AC020611 | 64697272 | 3 | chr12 | NT_009711 | AC025576 | 64886244 | 3 | 2001 | 0 | 0 | 2001 |
| S/G/Y/R/B/O |
NT_009711 | AC020611 | 64697272 | 3 |   |   | AC026114 | 64886244 | 1 | 14443 | 0 | 47300 | 61743 |
| S/G/Y/R/B/O |
NT_009711 | AC020611 | 64697272 | 3 |   |   | AC055724 | 64886244 | 1 | 13570 | 2115 | 11898 | 27583 |
| S/G/Y/R/B/O |
NT_009711 | AC025576 | 64886244 | 3 | chr12 | NT_009711 | AC012158 | 64977620 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC025576 | 64886244 | 3 |   |   | AC026114 | 64697272 | 1 | 31096 | 0 | 0 | 31096 |
| S/G/Y/R/B/O |
NT_009711 | AC025576 | 64886244 | 3 |   |   | AC055724 | 64697272 | 1 | 26602 | 0 | 39790 | 66392 |
| S/G/Y/R/B/O |
NT_009711 | AC012158 | 64977620 | 3 | chr12 | NT_009711 | AC079263 | 65128835 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC012158 | 64977620 | 3 |   |   | AC026114 | 64697272 | 1 | 35889 | 0 | 0 | 35889 |
| S/G/Y/R/B/O |
NT_009711 | AC012158 | 64977620 | 3 |   |   | AC055724 | 64697272 | 1 | 36450 | 0 | 8132 | 44582 |
| S/G/Y/R/B/O |
NT_009711 | AC079263 | 65128835 | 3 | chr12 | NT_009711 | AC026116 | 65292536 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC079263 | 65128835 | 3 | chr12 | NT_009711 | AC020609 | 65573638 | 1 | 48605 | 2642 | 0 | 51247 |
| S/G/Y/R/B/O |
NT_009711 | AC079263 | 65128835 | 3 | chr12 | NT_009711 | AC053489 | 64475307 | 1 | 100309 | 1499 | 60266 | 162074 |
| S/G/Y/R/B/O |
NT_009711 | AC079263 | 65128835 | 3 |   |   | AC068778 | 64475307 | 1 | 112081 | 4461 | 13492 | 130034 |
| S/G/Y/R/B/O |
NT_009711 | AC079263 | 65128835 | 3 |   |   | AC078827 | 64475307 | 1 | 113666 | 0 | 0 | 113666 |
| S/G/Y/R/B/O |
NT_009711 | AC026116 | 65292536 | 3 | chr12 | NT_009711 | AC017029 | 65469903 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC026116 | 65292536 | 3 | chr12 | NT_009711 | AC020609 | 65573638 | 1 | 107785 | 3686 | 8263 | 119734 |
| S/G/Y/R/B/O |
NT_009711 | AC026116 | 65292536 | 3 | chr12 | NT_009711 | AC025525 | 64468649 | 1 | 37265 | 2755 | 0 | 40020 |
| S/G/Y/R/B/O |
NT_009711 | AC026116 | 65292536 | 3 |   |   | AC078827 | 64468649 | 1 | 53347 | 0 | 0 | 53347 |
| S/G/Y/R/B/O |
NT_009711 | AC017029 | 65469903 | 1 | chr12 | NT_009711 | AC026104 | 65479031 | 1 | 44025 | 2460 | 15379 | 61864 |
| S/G/Y/R/B/O |
NT_009711 | AC017029 | 65469903 | 1 | chr12 | NT_009711 | AC023359 | 64238459 | 3 | 33311 | 0 | 0 | 33311 |
| S/G/Y/R/B/O |
NT_009711 | AC017029 | 65469903 | 1 | chr12 | NT_009711 | AC078814 | 64279180 | 3 | 109102 | 0 | 0 | 109102 |
| S/G/Y/R/B/O |
NT_009711 | AC017029 | 65469903 | 1 |   |   | AC036197 | 65479031 | 1 | 16731 | 0 | 3224 | 19955 |
| S/G/Y/R/B/O |
NT_009711 | AC026104 | 65479031 | 1 | chr12 | NT_009711 | AC020609 | 65573638 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009711 | AC026104 | 65479031 | 1 | chr12 | NT_009711 | AC023359 | 64238459 | 3 | 19467 | 0 | 6482 | 25949 |
| S/G/Y/R/B/O |
NT_009711 | AC026104 | 65479031 | 1 | chr12 | NT_009711 | AC025264 | 64046916 | 3 | 13289 | 0 | 0 | 13289 |
| S/G/Y/R/B/O |
NT_009711 | AC026104 | 65479031 | 1 | chr12 | NT_009711 | AC078814 | 64279180 | 3 | 95794 | 4237 | 18674 | 118705 |
| S/G/Y/R/B/O |
NT_009711 | AC026104 | 65479031 | 1 |   |   | AC036197 | 64046916 | 1 | 29484 | 0 | 1071 | 30555 |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 | chr12 | NT_009711 | AC026116 | 65292536 | 3 | 107785 | 3686 | 8263 | 119734 |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 | chr12 | NT_009711 | AC053489 | 64475307 | 1 | 23268 | 0 | 3104 | 26372 |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 | chr12 | NT_009711 | AC079263 | 65128835 | 3 | 48605 | 2642 | 0 | 51247 |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 |   |   | AC068778 | 64475307 | 1 | 15806 | 5031 | 7585 | 28422 |
| S/G/Y/R/B/O |
NT_009711 | AC020609 | 65573638 | 1 |   |   | AC078827 | 64475307 | 1 | 64790 | 0 | 3268 | 68058 |
| |
|
|
|