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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_009654 | AC090670 | 116144693 | 1 | chr12 | NT_009654 | AC009979 | 116153586 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC090670 | 116144693 | 1 | chr12 | NT_009654 | AC025740 | 117891014 | 1 | 38910 | 11927 | 1919 | 52756 |
| S/G/Y/R/B/O |
NT_009654 | AC090670 | 116144693 | 1 | chr12 | NT_009654 | AC079384 | 117704995 | 3 | 37782 | 10679 | 5373 | 53834 |
| S/G/Y/R/B/O |
NT_009654 | AC090670 | 116144693 | 1 |   |   | AC027394 | 117891014 | 1 | 58229 | 29536 | 21278 | 109043 |
| S/G/Y/R/B/O |
NT_009654 | AC009979 | 116153586 | 1 | chr12 | NT_009654 | AC008125 | 116335546 | 3 | 7707 | 0 | 0 | 7707 |
| S/G/Y/R/B/O |
NT_009654 | AC009979 | 116153586 | 1 | chr1 | NT_031697 | AL355973 | 117378738 | 1 | 17801 | 3871 | 8652 | 30324 |
| S/G/Y/R/B/O |
NT_009654 | AC009979 | 116153586 | 1 |   |   | AC018655 | 116335546 | 3 | 16886 | 0 | 0 | 16886 |
| S/G/Y/R/B/O |
NT_009654 | AC008125 | 116335546 | 3 | chr12 | NT_009654 | AC009770 | 116524832 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC008125 | 116335546 | 3 | chr12 | NT_009654 | AC040911 | 116658203 | 1 | 127171 | 16334 | 2372 | 145877 |
| S/G/Y/R/B/O |
NT_009654 | AC009770 | 116524832 | 3 | chr12 | NT_009654 | AC078880 | 116562618 | 1 | 0 | 1340 | 0 | 1340 |
| S/G/Y/R/B/O |
NT_009654 | AC009770 | 116524832 | 3 | chr12 | NT_009654 | AC040911 | 116658203 | 1 | 27261 | 0 | 0 | 27261 |
| S/G/Y/R/B/O |
NT_009654 | AC078880 | 116562618 | 1 | chr12 | NT_009654 | AC040911 | 116658203 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC078880 | 116562618 | 1 | chr12 | NT_009654 | AC026122 | 116729172 | 3 | 33851 | 0 | 0 | 33851 |
| S/G/Y/R/B/O |
NT_009654 | AC078880 | 116562618 | 1 |   |   | AC002478 | 116562618 | 3 | 69978 | 0 | 0 | 69978 |
| S/G/Y/R/B/O |
NT_009654 | AC040911 | 116658203 | 1 | chr12 | NT_009654 | AC026122 | 116729172 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC040911 | 116658203 | 1 | chr12 | NT_009654 | AC008125 | 116335546 | 3 | 127171 | 16334 | 2372 | 145877 |
| S/G/Y/R/B/O |
NT_009654 | AC040911 | 116658203 | 1 | chr12 | NT_009654 | AC009770 | 116524832 | 3 | 27261 | 0 | 0 | 27261 |
| S/G/Y/R/B/O |
NT_009654 | AC026122 | 116729172 | 3 | chr12 | NT_009654 | AC010179 | 116914006 | 3 | 0 | 1991 | 0 | 1991 |
| S/G/Y/R/B/O |
NT_009654 | AC026122 | 116729172 | 3 | chr12 | NT_009654 | AC078880 | 116562618 | 1 | 33851 | 0 | 0 | 33851 |
| S/G/Y/R/B/O |
NT_009654 | AC010179 | 116914006 | 3 | chr12 | NT_009654 | AC009803 | 116916012 | 3 | 2006 | 0 | 0 | 2006 |
| S/G/Y/R/B/O |
NT_009654 | AC009803 | 116916012 | 3 | chr12 | NT_009654 | AC068640 | 117100050 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC009803 | 116916012 | 3 |   |   | AC009387 | 116729172 | 1 | 22229 | 0 | 0 | 22229 |
| S/G/Y/R/B/O |
NT_009654 | AC009803 | 116916012 | 3 |   |   | AC023799 | 116914006 | 1 | 19849 | 0 | 134480 | 154329 |
| S/G/Y/R/B/O |
NT_009654 | AC068640 | 117100050 | 3 | chr12 | NT_009654 | AC007912 | 117131377 | 3 | 66317 | 0 | 0 | 66317 |
| S/G/Y/R/B/O |
NT_009654 | AC068640 | 117100050 | 3 |   |   | AC009387 | 117131377 | 1 | 79798 | 0 | 0 | 79798 |
| S/G/Y/R/B/O |
NT_009654 | AC007912 | 117131377 | 3 | chr12 | NT_009654 | AC012157 | 117195862 | 3 | 106762 | 0 | 0 | 106762 |
| S/G/Y/R/B/O |
NT_009654 | AC007912 | 117131377 | 3 |   |   | AC009387 | 117361695 | 1 | 104366 | 0 | 0 | 104366 |
| S/G/Y/R/B/O |
NT_009654 | AC012157 | 117195862 | 3 | chr12 | NT_009654 | AC009321 | 117361695 | 1 | 58260 | 0 | 7936 | 66196 |
| S/G/Y/R/B/O |
NT_009654 | AC012157 | 117195862 | 3 |   |   | AC009387 | 117361695 | 1 | 56678 | 0 | 0 | 56678 |
| S/G/Y/R/B/O |
NT_009654 | AC009321 | 117361695 | 1 | chr12 | NT_009654 | AC019249 | 117387104 | 1 | 39812 | 2210 | 2556 | 44578 |
| S/G/Y/R/B/O |
NT_009654 | AC019249 | 117387104 | 1 | chr12 | NT_009654 | AC026334 | 117507391 | 3 | 55131 | 2378 | 4070 | 61579 |
| S/G/Y/R/B/O |
NT_009654 | AC026334 | 117507391 | 3 | chr12 | NT_009654 | AC060226 | 117572391 | 3 | 2074 | 0 | 0 | 2074 |
| S/G/Y/R/B/O |
NT_009654 | AC060226 | 117572391 | 3 | chr12 | NT_009654 | AC079384 | 117704995 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_009654 | AC060226 | 117572391 | 3 | chr12 | NT_009654 | AC078870 | 117888469 | 1 | 66828 | 0 | 0 | 66828 |
| S/G/Y/R/B/O |
NT_009654 | AC079384 | 117704995 | 3 | chr12 | NT_009654 | AC078870 | 117888469 | 1 | 118013 | 0 | 597 | 118610 |
| S/G/Y/R/B/O |
NT_009654 | AC079384 | 117704995 | 3 | chr12 | NT_009654 | AC090670 | 116144693 | 1 | 37782 | 10679 | 5373 | 53834 |
| S/G/Y/R/B/O |
NT_009654 | AC079384 | 117704995 | 3 |   |   | AC027394 | 117704995 | 1 | 74438 | 1478 | 4041 | 79957 |
| S/G/Y/R/B/O |
NT_009654 | AC078870 | 117888469 | 1 | chr12 | NT_009654 | AC025740 | 117891014 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC078870 | 117888469 | 1 | chr12 | NT_009654 | AC060226 | 117572391 | 3 | 66828 | 0 | 0 | 66828 |
| S/G/Y/R/B/O |
NT_009654 | AC025740 | 117891014 | 1 | chr12 | NT_009654 | AC090013 | 118046844 | 3 | 20287 | 2253 | 0 | 22540 |
| S/G/Y/R/B/O |
NT_009654 | AC025740 | 117891014 | 1 | chr12 | NT_009654 | AC090670 | 116144693 | 1 | 38910 | 11927 | 1919 | 52756 |
| S/G/Y/R/B/O |
NT_009654 | AC025740 | 117891014 | 1 |   |   | AC025687 | 116144693 | 1 | 17196 | 0 | 0 | 17196 |
| S/G/Y/R/B/O |
NT_009654 | AC025740 | 117891014 | 1 |   |   | AC027394 | 116144693 | 1 | 78702 | 4621 | 4038 | 87361 |
| S/G/Y/R/B/O |
NT_009654 | AC090013 | 118046844 | 3 | chr12 | NT_009654 | AC083806 | 118130257 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009654 | AC090013 | 118046844 | 3 |   |   | AC025687 | 116144693 | 1 | 59995 | 8639 | 1038 | 69672 |
| S/G/Y/R/B/O |
NT_009654 | AC083806 | 118130257 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_009654 | AC083806 | 118130257 | 1 |   |   | AC025687 | 117891014 | 1 | 86437 | 5564 | 2268 | 94269 |
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