Chromosome 12 - Clone Overlaps

Chromosome 12 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_009759	NT_009738	NT_024413	NT_033253	NT_009731	NT_009702	NT_009714	NT_033252
NT_027128	NT_024397	NT_030810	NT_009700	NT_030814	NT_024382	NT_030804	NT_026404
NT_009666	NT_009471	NT_033254	NT_033256	NT_033255	NT_033247	NT_024380	NT_025869
NT_024352	NT_009486	NT_024370	NT_028332	NT_009781	NT_030809	NT_009784	NT_009785
NT_009526	NT_026397	NT_024417	NT_026409	NT_009782	NT_009609	NT_030118	NT_009563
NT_009458	NT_009485	NT_009509	NT_009410	NT_024362	NT_028337	NT_009441	NT_024372
NT_009432	NT_027130	NT_009711	NT_009506	NT_030813	NT_027129	NT_009616	NT_009561
NT_029419	NT_009540	NT_009528	NT_015310	NT_009456	NT_029428	NT_024375	NT_009593
NT_033251	NT_024460	NT_024381	NT_024354	NT_030815	NT_024373	NT_009551	NT_019546
NT_029418	NT_024420	NT_024356	NT_026408	NT_024480	NT_026396	NT_024454	NT_025864
NT_009538	NT_030122	NT_024363	NT_029420	NT_024400	NT_009729	NT_019555	NT_009447
NT_009513	NT_009690	NT_015316	NT_030816	NT_009575	NT_024394	NT_033258	NT_009681
NT_009743	NT_033257	NT_024383	NT_030807	NT_030124	NT_009660	NT_033245	NT_009770
NT_009601	NT_009654	NT_030806	NT_029421	NT_009436	NT_009775	NT_028327	NT_009487
NT_009438	NT_009464	NT_033248	NT_009755	NT_009534	NT_009482	NT_024376	NT_009523
NT_024369	NT_033246	NT_033250	NT_027131	NT_009455	NT_024477

NT_009781

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_009781	AC090630	38542305	1	chr12	NT_009781	AC025880	38567535	1	82461	21310	15062	118833
S/G/Y/R/B/O	NT_009781	AC090630	38542305	1	chr12	NT_009781	AC006197	38647721	3	18632	4750	0	23382
S/G/Y/R/B/O	NT_009781	AC025880	38567535	1	chr12	NT_009781	AC006197	38647721	3	33573	0	0	33573
S/G/Y/R/B/O	NT_009781	AC025880	38567535	1	chr12	NT_009781	AC018698	40763938	3	14798	0	0	14798
S/G/Y/R/B/O	NT_009781	AC025880	38567535	1			AC092973	38542305	1	14798	0	0	14798
S/G/Y/R/B/O	NT_009781	AC006197	38647721	3	chr12	NT_009781	AC078871	38802075	3	93381	0	0	93381
S/G/Y/R/B/O	NT_009781	AC006197	38647721	3	chr12	NT_009781	AC090630	38542305	1	18632	4750	0	23382
S/G/Y/R/B/O	NT_009781	AC078871	38802075	3	chr12	NT_009781	AC023513	38827813	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC023513	38827813	3	chr12	NT_009781	AC020629	38943754	3	0	0	169	169
S/G/Y/R/B/O	NT_009781	AC023513	38827813	3			AC024943	38943754	1	37114	0	0	37114
S/G/Y/R/B/O	NT_009781	AC020629	38943754	3	chr12	NT_009781	AC079684	39086551	3	0	506	0	506
S/G/Y/R/B/O	NT_009781	AC020629	38943754	3			AC024943	38827813	1	44954	5354	2408	52716
S/G/Y/R/B/O	NT_009781	AC079684	39086551	3	chr12	NT_009781	AC079601	39182049	1	57205	0	0	57205
S/G/Y/R/B/O	NT_009781	AC079601	39182049	1	chr12	NT_009781	AC018906	39265803	1	30541	0	0	30541
S/G/Y/R/B/O	NT_009781	AC079601	39182049	1	chr12	NT_009781	AC079600	39307719	1	36583	0	0	36583
S/G/Y/R/B/O	NT_009781	AC018906	39265803	1	chr12	NT_009781	AC079600	39307719	1	0	0	1881	1881
S/G/Y/R/B/O	NT_009781	AC079600	39307719	1	chr12	NT_009781	AC089982	39484728	3	21323	0	0	21323
S/G/Y/R/B/O	NT_009781	AC079600	39307719	1	chr12	NT_009781	AC079601	39182049	1	36583	0	0	36583
S/G/Y/R/B/O	NT_009781	AC089982	39484728	3	chr12	NT_009781	AC068036	39619064	1	129635	0	0	129635
S/G/Y/R/B/O	NT_009781	AC068036	39619064	1	chr12	NT_009781	AC068802	39637564	3	23968	0	25395	49363
S/G/Y/R/B/O	NT_009781	AC068802	39637564	3	chr12	NT_009781	AC012038	39766914	3	0	0	240	240
S/G/Y/R/B/O	NT_009781	AC012038	39766914	3	chr12	NT_009781	AC079319	39840064	3	0	0	216	216
S/G/Y/R/B/O	NT_009781	AC079319	39840064	3	chr12	NT_009781	AC079603	39992297	3	35422	0	0	35422
S/G/Y/R/B/O	NT_009781	AC079319	39840064	3	chr12	NT_009781	AC060802	40227602	1	41654	2451	0	44105
S/G/Y/R/B/O	NT_009781	AC079603	39992297	3	chr12	NT_009781	AC107018	40121680	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC079603	39992297	3	chr12	NT_009781	AC026637	40228731	1	49893	3761	0	53654
S/G/Y/R/B/O	NT_009781	AC079603	39992297	3	chr12	NT_009781	AC060802	40227602	1	119595	7628	8525	135748
S/G/Y/R/B/O	NT_009781	AC107018	40121680	3	chr12	NT_009781	AC025516	40225049	1	33993	0	0	33993
S/G/Y/R/B/O	NT_009781	AC107018	40121680	3	chr12	NT_009781	AC026637	40228731	1	87222	8550	0	95772
S/G/Y/R/B/O	NT_009781	AC025516	40225049	1	chr12	NT_009781	AC060802	40227602	1	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC025516	40225049	1	chr12	NT_009781	AC026637	40228731	1	18042	2959	0	21001
S/G/Y/R/B/O	NT_009781	AC025516	40225049	1	chr12	NT_009781	AC090525	40333182	3	30612	0	0	30612
S/G/Y/R/B/O	NT_009781	AC025516	40225049	1			AC040949	40331241	1	101905	735	0	102640
S/G/Y/R/B/O	NT_009781	AC060802	40227602	1	chr12	NT_009781	AC026637	40228731	1	17116	2358	8526	28000
S/G/Y/R/B/O	NT_009781	AC060802	40227602	1	chr12	NT_009781	AC079319	39840064	3	41654	2451	0	44105
S/G/Y/R/B/O	NT_009781	AC060802	40227602	1	chr12	NT_009781	AC079603	39992297	3	119595	7628	8525	135748
S/G/Y/R/B/O	NT_009781	AC026637	40228731	1	chr12	NT_009781	AC026831	40331241	1	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC026637	40228731	1	chr12	NT_009781	AC025516	40225049	1	18042	2959	0	21001
S/G/Y/R/B/O	NT_009781	AC026637	40228731	1	chr12	NT_009781	AC079603	39992297	3	49893	3761	0	53654
S/G/Y/R/B/O	NT_009781	AC026637	40228731	1	chr12	NT_009781	AC107018	40121680	3	87222	8550	0	95772
S/G/Y/R/B/O	NT_009781	AC026831	40331241	1	chr12	NT_009781	AC090525	40333182	3	137147	7534	0	144681
S/G/Y/R/B/O	NT_009781	AC026831	40331241	1	chr12	NT_009781	AC016143	40505818	1	36768	0	0	36768
S/G/Y/R/B/O	NT_009781	AC026831	40331241	1			AC022198	151089602	1	24559	2048	7306	33913
S/G/Y/R/B/O	NT_009781	AC026831	40331241	1			AC040949	151101649	1	40586	1942	0	42528
S/G/Y/R/B/O	NT_009781	AC090525	40333182	3	chr12	NT_009781	AC016143	40505818	1	46677	0	0	46677
S/G/Y/R/B/O	NT_009781	AC090525	40333182	3	chr12	NT_009781	AC025516	40225049	1	30612	0	0	30612
S/G/Y/R/B/O	NT_009781	AC090525	40333182	3			AC022198	40505818	1	73174	2048	13517	88739
S/G/Y/R/B/O	NT_009781	AC090525	40333182	3			AC040949	4938838	1	46378	0	0	46378
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1	chr12	NT_009781	AC007667	40509753	1	32541	0	6087	38628
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1	chr12	NT_009781	AC026831	40331241	1	36768	0	0	36768
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1	chr12	NT_009781	AC093012	40576813	1	31061	0	37533	68594
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1			AC021719	40509753	1	49942	1966	0	51908
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1			AC022198	40509753	1	81385	12487	10309	104181
S/G/Y/R/B/O	NT_009781	AC016143	40505818	1			AC025567	40509753	1	40059	7109	6813	53981
S/G/Y/R/B/O	NT_009781	AC007667	40509753	1	chr12	NT_009781	AC093012	40576813	1	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC007667	40509753	1			AC022198	40505818	1	17742	5224	2830	25796
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1	chr12	NT_009781	AC018698	40763938	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1	chr12	NT_009781	AC016143	40505818	1	31061	0	37533	68594
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1	chr12	NT_009781	AC076972	41657290	3	13177	0	14066	27243
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1			AC021719	40505818	1	118901	1980	6690	127571
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1			AC022198	40505818	1	12793	0	0	12793
S/G/Y/R/B/O	NT_009781	AC093012	40576813	1			AC025567	40505818	1	48526	9346	4889	62761
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3	chr12	NT_009781	AC090531	40901405	3	67165	0	0	67165
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3	chr12	NT_009781	AC025880	38567535	1	14798	0	0	14798
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3			AC021137	77818000	1	35117	1665	0	36782
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3			AC025655	77818000	1	117607	3933	0	121540
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3			AC087895	38567535	1	25272	0	0	25272
S/G/Y/R/B/O	NT_009781	AC018698	40763938	3			AC092973	38542305	1	205117	0	0	205117
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3	chr12	NT_009781	AC073607	41104028	3	0	1844	0	1844
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3			AC021137	40763938	1	117162	1665	61240	180067
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3			AC025655	40763938	1	39059	3934	0	42993
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3			AC079812	41104028	1	12568	0	0	12568
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3			AC087895	41104028	1	140456	0	0	140456
S/G/Y/R/B/O	NT_009781	AC090531	40901405	3			AC092973	41104028	1	67156	0	0	67156
S/G/Y/R/B/O	NT_009781	AC073607	41104028	3	chr12	NT_009781	AC021651	41268912	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC073607	41104028	3			AC011039	41104028	1	95230	0	0	95230
S/G/Y/R/B/O	NT_009781	AC021651	41268912	3	chr12	NT_009781	AC024900	41335855	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC021651	41268912	3			AC011039	40901405	1	67149	0	0	67149
S/G/Y/R/B/O	NT_009781	AC024900	41335855	3	chr12	NT_009781	AC015540	41507622	3	0	0	203	203
S/G/Y/R/B/O	NT_009781	AC024900	41335855	3			AC011039	40901405	1	19734	0	0	19734
S/G/Y/R/B/O	NT_009781	AC024900	41335855	3			AC011836	40901405	1	140607	0	0	140607
S/G/Y/R/B/O	NT_009781	AC015540	41507622	3	chr12	NT_009781	AC027442	41651409	1	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC027442	41651409	1	chr12	NT_009781	AC076972	41657290	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC027442	41651409	1	chr12	NT_009781	AC024934	41818830	3	150226	6367	1468	158061
S/G/Y/R/B/O	NT_009781	AC027442	41651409	1			AC008380	41335855	3	23320	1917	0	25237
S/G/Y/R/B/O	NT_009781	AC027442	41651409	1			AC008503	41335855	3	23322	1917	0	25239
S/G/Y/R/B/O	NT_009781	AC076972	41657290	3	chr12	NT_009781	AC024934	41818830	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC076972	41657290	3	chr12	NT_009781	AC093012	40576813	1	13177	0	14066	27243
S/G/Y/R/B/O	NT_009781	AC076972	41657290	3			AC021719	65301661	1	36305	2078	0	38383
S/G/Y/R/B/O	NT_009781	AC024934	41818830	3	chr12	NT_009781	AC073653	42011731	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC024934	41818830	3	chr12	NT_009781	AC027442	41651409	1	150226	6367	1468	158061
S/G/Y/R/B/O	NT_009781	AC024934	41818830	3			AC008380	40576813	3	40943	0	0	40943
S/G/Y/R/B/O	NT_009781	AC024934	41818830	3			AC008503	40576813	3	40945	0	0	40945
S/G/Y/R/B/O	NT_009781	AC073653	42011731	3	chr12	NT_009781	AC025030	42019330	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC073653	42011731	3			AC008380	126894339	3	16436	0	0	16436
S/G/Y/R/B/O	NT_009781	AC073653	42011731	3			AC008503	126894339	3	16436	0	0	16436
S/G/Y/R/B/O	NT_009781	AC025030	42019330	3	chr12	NT_009781	AC025253	42190045	3	10743	0	0	10743
S/G/Y/R/B/O	NT_009781	AC025030	42019330	3			AC008380	126894339	3	105557	0	0	105557
S/G/Y/R/B/O	NT_009781	AC025030	42019330	3			AC008503	126894339	3	105559	0	0	105559
S/G/Y/R/B/O	NT_009781	AC025253	42190045	3	chr12	NT_009781	AC018923	42349993	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC025253	42190045	3			AC019004	42190045	1	66625	0	1335	67960
S/G/Y/R/B/O	NT_009781	AC018923	42349993	3	chr12	NT_009781	AC090012	42502597	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC018923	42349993	3			AC018583	42019330	1	32467	0	0	32467
S/G/Y/R/B/O	NT_009781	AC018923	42349993	3			AC019004	42019330	1	123598	0	0	123598
S/G/Y/R/B/O	NT_009781	AC018923	42349993	3			AC067892	42019330	1	48610	1528	0	50138
S/G/Y/R/B/O	NT_009781	AC090012	42502597	3	chr12	NT_009781	AC079825	42640826	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC090012	42502597	3			AC018583	42019330	1	126993	0	1382	128375
S/G/Y/R/B/O	NT_009781	AC090012	42502597	3			AC067892	42019330	1	29554	4265	0	33819
S/G/Y/R/B/O	NT_009781	AC079825	42640826	3	chr12	NT_009781	AC079033	42675959	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC079825	42640826	3			AC027596	42019330	1	25951	0	0	25951
S/G/Y/R/B/O	NT_009781	AC079033	42675959	3	chr12	NT_009781	AC089986	42824078	1	108031	0	0	108031
S/G/Y/R/B/O	NT_009781	AC079033	42675959	3			AC025526	42019330	1	83849	7800	3860	95509
S/G/Y/R/B/O	NT_009781	AC079033	42675959	3			AC027596	42019330	1	107039	0	3157	110196
S/G/Y/R/B/O	NT_009781	AC089986	42824078	1	chr12	NT_009781	AC008127	42833863	3	68255	0	0	68255
S/G/Y/R/B/O	NT_009781	AC089986	42824078	1			AC025526	42833863	1	109867	10826	14104	134797
S/G/Y/R/B/O	NT_009781	AC089986	42824078	1			AC027596	42833863	1	49676	1975	1183	52834
S/G/Y/R/B/O	NT_009781	AC008127	42833863	3	chr12	NT_009781	AC009248	42971357	3	0	0	195	195
S/G/Y/R/B/O	NT_009781	AC008127	42833863	3			AC025526	42971357	1	26414	2576	2445	31435
S/G/Y/R/B/O	NT_009781	AC009248	42971357	3	chr12	NT_009781	AC009778	43140702	3	0	0	324	324
S/G/Y/R/B/O	NT_009781	AC009778	43140702	3	chr12	NT_009781	AC063924	43223565	3	0	474	0	474
S/G/Y/R/B/O	NT_009781	AC063924	43223565	3	chr12	NT_009781	AC079950	43252791	3	0	2000	0	2000
S/G/Y/R/B/O	NT_009781	AC079950	43252791	3	chr12	NT_009781	AC008124	43385914	3	2000	0	0	2000
S/G/Y/R/B/O	NT_009781	AC008124	43385914	3	chr12	NT_009781	AC009777	43567300	3	0	0	201	201
S/G/Y/R/B/O	NT_009781	AC009777	43567300	3	chr12	NT_009781	AC009464	43567650	3	0	0	296	296
S/G/Y/R/B/O	NT_009781	AC009464	43567650	3	chr12	NT_009781	AC000015	43712648	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC009464	43567650	3	chr12	NT_009781	AC010172	44224093	1	22597	0	0	22597
S/G/Y/R/B/O	NT_009781	AC000015	43712648	3	chr12	NT_009781	AC084878	43777424	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC000015	43712648	3	chr12	NT_009781	AC010172	44224093	1	66691	0	0	66691
S/G/Y/R/B/O	NT_009781	AC084878	43777424	3	chr12	NT_009781	AC016254	43865325	3	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC084878	43777424	3	chr12	NT_009781	AC010172	44224093	1	103625	0	24441	128066
S/G/Y/R/B/O	NT_009781	AC016254	43865325	3	chr12	NT_009781	AC025031	44027654	1	27336	0	0	27336
S/G/Y/R/B/O	NT_009781	AC016254	43865325	3			AC021353	44224093	1	23182	0	0	23182
S/G/Y/R/B/O	NT_009781	AC025031	44027654	1	chr12	NT_009781	AC010172	44224093	1	0	0	0	0
S/G/Y/R/B/O	NT_009781	AC025031	44027654	1			AC021353	43865325	1	153523	2293	0	155816
S/G/Y/R/B/O	NT_009781	AC010172	44224093	1
S/G/Y/R/B/O	NT_009781	AC010172	44224093	1	chr12	NT_009781	AC000015	43712648	3	66691	0	0	66691
S/G/Y/R/B/O	NT_009781	AC010172	44224093	1	chr12	NT_009781	AC009464	43567650	3	22597	0	0	22597
S/G/Y/R/B/O	NT_009781	AC010172	44224093	1	chr12	NT_009781	AC084878	43777424	3	103625	0	24441	128066