|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_009534 | AC078878 | 127392489 | 3 | chr12 | NT_009534 | AC007675 | 127564881 | 1 | 115311 | 0 | 0 | 115311 |
| S/G/Y/R/B/O |
NT_009534 | AC078878 | 127392489 | 3 | chr12 | NT_009534 | AC011565 | 127566243 | 1 | 37019 | 0 | 0 | 37019 |
| S/G/Y/R/B/O |
NT_009534 | AC078878 | 127392489 | 3 | chr12 | NT_009534 | AC090117 | 127663336 | 1 | 27558 | 0 | 10794 | 38352 |
| S/G/Y/R/B/O |
NT_009534 | AC078878 | 127392489 | 3 |   |   | AC020640 | 127566243 | 1 | 154685 | 0 | 0 | 154685 |
| S/G/Y/R/B/O |
NT_009534 | AC007675 | 127564881 | 1 | chr12 | NT_009534 | AC011565 | 127566243 | 1 | 57055 | 0 | 0 | 57055 |
| S/G/Y/R/B/O |
NT_009534 | AC007675 | 127564881 | 1 | chr12 | NT_009534 | AC079949 | 127597883 | 1 | 14507 | 0 | 0 | 14507 |
| S/G/Y/R/B/O |
NT_009534 | AC007675 | 127564881 | 1 | chr12 | NT_009534 | AC090117 | 127663336 | 1 | 54169 | 0 | 19900 | 74069 |
| S/G/Y/R/B/O |
NT_009534 | AC007675 | 127564881 | 1 |   |   | AC020640 | 127566243 | 1 | 90379 | 0 | 0 | 90379 |
| S/G/Y/R/B/O |
NT_009534 | AC011565 | 127566243 | 1 | chr12 | NT_009534 | AC079949 | 127597883 | 1 | 45207 | 2709 | 28237 | 76153 |
| S/G/Y/R/B/O |
NT_009534 | AC011565 | 127566243 | 1 | chr12 | NT_009534 | AC034280 | 128575698 | 1 | 15718 | 2554 | 0 | 18272 |
| S/G/Y/R/B/O |
NT_009534 | AC011565 | 127566243 | 1 | chr12 | NT_009534 | AC078878 | 127392489 | 3 | 37019 | 0 | 0 | 37019 |
| S/G/Y/R/B/O |
NT_009534 | AC011565 | 127566243 | 1 | chr12 | NT_009534 | AC090117 | 127663336 | 1 | 69684 | 5616 | 24923 | 100223 |
| S/G/Y/R/B/O |
NT_009534 | AC011565 | 127566243 | 1 |   |   | AC020640 | 127564881 | 1 | 33201 | 0 | 0 | 33201 |
| S/G/Y/R/B/O |
NT_009534 | AC079949 | 127597883 | 1 | chr12 | NT_009534 | AC090117 | 127663336 | 1 | 59391 | 0 | 13270 | 72661 |
| S/G/Y/R/B/O |
NT_009534 | AC079949 | 127597883 | 1 | chr12 | NT_009534 | AC007675 | 127564881 | 1 | 14507 | 0 | 0 | 14507 |
| S/G/Y/R/B/O |
NT_009534 | AC079949 | 127597883 | 1 | chr12 | NT_009534 | AC034280 | 128575698 | 1 | 102505 | 9019 | 6074 | 117598 |
| S/G/Y/R/B/O |
NT_009534 | AC079949 | 127597883 | 1 | chr12 | NT_009534 | AC073913 | 127786011 | 3 | 55680 | 0 | 0 | 55680 |
| S/G/Y/R/B/O |
NT_009534 | AC079949 | 127597883 | 1 |   |   | AC016836 | 127566243 | 1 | 51294 | 0 | 0 | 51294 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 | chr12 | NT_009534 | AC073913 | 127786011 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 | chr12 | NT_009534 | AC007675 | 127564881 | 1 | 54169 | 0 | 19900 | 74069 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 | chr12 | NT_009534 | AC011565 | 127566243 | 1 | 69684 | 5616 | 24923 | 100223 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 | chr12 | NT_009534 | AC034280 | 128575698 | 1 | 15381 | 2554 | 0 | 17935 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 | chr12 | NT_009534 | AC078878 | 127392489 | 3 | 27558 | 0 | 10794 | 38352 |
| S/G/Y/R/B/O |
NT_009534 | AC090117 | 127663336 | 1 |   |   | AC020640 | 127566243 | 1 | 27605 | 0 | 10911 | 38516 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 | chr12 | NT_009534 | AC027292 | 127898485 | 1 | 11471 | 2910 | 34372 | 48753 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 | chr8 | NT_023811 | AC023778 | 120325755 | 1 | 12671 | 13021 | 13192 | 38884 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 | chr12 | NT_009534 | AC034280 | 128575698 | 1 | 35054 | 0 | 1291 | 36345 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 | chr12 | NT_009534 | AC079949 | 127597883 | 1 | 55680 | 0 | 0 | 55680 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 |   |   | AC016836 | 127597883 | 1 | 122346 | 0 | 1149 | 123495 |
| S/G/Y/R/B/O |
NT_009534 | AC073913 | 127786011 | 3 |   |   | AC048347 | 128575698 | 1 | 36233 | 0 | 2563 | 38796 |
| S/G/Y/R/B/O |
NT_009534 | AC027292 | 127898485 | 1 | chr12 | NT_009534 | AC068787 | 127934620 | 1 | 12793 | 0 | 71575 | 84368 |
| S/G/Y/R/B/O |
NT_009534 | AC027292 | 127898485 | 1 | chr12 | NT_009534 | AC025252 | 128091524 | 1 | 11984 | 0 | 0 | 11984 |
| S/G/Y/R/B/O |
NT_009534 | AC027292 | 127898485 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 13257 | 0 | 6160 | 19417 |
| S/G/Y/R/B/O |
NT_009534 | AC027292 | 127898485 | 1 |   |   | AC048347 | 128091524 | 1 | 90460 | 0 | 17950 | 108410 |
| S/G/Y/R/B/O |
NT_009534 | AC068787 | 127934620 | 1 | chr12 | NT_009534 | AC023584 | 128089039 | 1 | 118312 | 0 | 25763 | 144075 |
| S/G/Y/R/B/O |
NT_009534 | AC068787 | 127934620 | 1 | chr12 | NT_009534 | AC025252 | 128091524 | 1 | 14627 | 0 | 0 | 14627 |
| S/G/Y/R/B/O |
NT_009534 | AC068787 | 127934620 | 1 | chr12 | NT_009534 | AC026944 | 128148101 | 1 | 28124 | 0 | 0 | 28124 |
| S/G/Y/R/B/O |
NT_009534 | AC068787 | 127934620 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 83101 | 2011 | 23375 | 108487 |
| S/G/Y/R/B/O |
NT_009534 | AC068787 | 127934620 | 1 |   |   | AC048347 | 127898485 | 1 | 44470 | 0 | 0 | 44470 |
| S/G/Y/R/B/O |
NT_009534 | AC023584 | 128089039 | 1 | chr12 | NT_009534 | AC025252 | 128091524 | 1 | 94480 | 2388 | 26453 | 123321 |
| S/G/Y/R/B/O |
NT_009534 | AC023584 | 128089039 | 1 | chr12 | NT_009534 | AC026944 | 128148101 | 1 | 53013 | 0 | 0 | 53013 |
| S/G/Y/R/B/O |
NT_009534 | AC023584 | 128089039 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 80838 | 10450 | 6160 | 97448 |
| S/G/Y/R/B/O |
NT_009534 | AC023584 | 128089039 | 1 |   |   | AC024596 | 120325755 | 1 | 18403 | 0 | 0 | 18403 |
| S/G/Y/R/B/O |
NT_009534 | AC023584 | 128089039 | 1 |   |   | AC048347 | 127898485 | 1 | 40486 | 0 | 0 | 40486 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 | chr12 | NT_009534 | AC026944 | 128148101 | 1 | 92939 | 1533 | 0 | 94472 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 | chr12 | NT_009534 | AC027292 | 127898485 | 1 | 11984 | 0 | 0 | 11984 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 | chr12 | NT_009534 | AC068787 | 127934620 | 1 | 14627 | 0 | 0 | 14627 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 76680 | 10450 | 24961 | 112091 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 |   |   | AC024596 | 128089039 | 1 | 44672 | 0 | 13582 | 58254 |
| S/G/Y/R/B/O |
NT_009534 | AC025252 | 128091524 | 1 |   |   | AC048347 | 127898485 | 1 | 21254 | 0 | 0 | 21254 |
| S/G/Y/R/B/O |
NT_009534 | AC026944 | 128148101 | 1 | chr12 | NT_009534 | AC025160 | 128158372 | 3 | 48379 | 0 | 0 | 48379 |
| S/G/Y/R/B/O |
NT_009534 | AC026944 | 128148101 | 1 | chr12 | NT_009534 | AC023584 | 128089039 | 1 | 53013 | 0 | 0 | 53013 |
| S/G/Y/R/B/O |
NT_009534 | AC026944 | 128148101 | 1 | chr12 | NT_009534 | AC068787 | 127934620 | 1 | 28124 | 0 | 0 | 28124 |
| S/G/Y/R/B/O |
NT_009534 | AC026944 | 128148101 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 50999 | 10449 | 0 | 61448 |
| S/G/Y/R/B/O |
NT_009534 | AC026944 | 128148101 | 1 |   |   | AC024596 | 128089039 | 1 | 55796 | 2770 | 13065 | 71631 |
| S/G/Y/R/B/O |
NT_009534 | AC025160 | 128158372 | 3 | chr12 | NT_009534 | AC023357 | 128291164 | 1 | 35015 | 5426 | 10250 | 50691 |
| S/G/Y/R/B/O |
NT_009534 | AC025160 | 128158372 | 3 |   |   | AC011172 | 128569899 | 1 | 52573 | 2116 | 0 | 54689 |
| S/G/Y/R/B/O |
NT_009534 | AC025160 | 128158372 | 3 |   |   | AC024596 | 128291164 | 1 | 60843 | 14811 | 38868 | 114522 |
| S/G/Y/R/B/O |
NT_009534 | AC025160 | 128158372 | 3 |   |   | AC112500 | 128148101 | 1 | 21302 | 4552 | 14851 | 40705 |
| S/G/Y/R/B/O |
NT_009534 | AC023357 | 128291164 | 1 | chr12 | NT_009534 | AC087894 | 128294545 | 3 | 64680 | 2103 | 34271 | 101054 |
| S/G/Y/R/B/O |
NT_009534 | AC023357 | 128291164 | 1 | chr12 | NT_009534 | AC024105 | 128471806 | 1 | 11961 | 1118 | 12942 | 26021 |
| S/G/Y/R/B/O |
NT_009534 | AC023357 | 128291164 | 1 | chr12 | NT_009534 | AC078959 | 128384071 | 1 | 31259 | 0 | 27950 | 59209 |
| S/G/Y/R/B/O |
NT_009534 | AC023357 | 128291164 | 1 |   |   | AC011172 | 128148101 | 1 | 60865 | 7519 | 32151 | 100535 |
| S/G/Y/R/B/O |
NT_009534 | AC023357 | 128291164 | 1 |   |   | AC112500 | 128294545 | 1 | 14240 | 5827 | 23884 | 43951 |
| S/G/Y/R/B/O |
NT_009534 | AC087894 | 128294545 | 3 | chr12 | NT_009534 | AC078959 | 128384071 | 1 | 129271 | 2400 | 17630 | 149301 |
| S/G/Y/R/B/O |
NT_009534 | AC087894 | 128294545 | 3 | chr12 | NT_009534 | AC024105 | 128471806 | 1 | 123445 | 0 | 0 | 123445 |
| S/G/Y/R/B/O |
NT_009534 | AC087894 | 128294545 | 3 | chr12 | NT_009534 | AC074345 | 128481362 | 1 | 44303 | 0 | 39246 | 83549 |
| S/G/Y/R/B/O |
NT_009534 | AC087894 | 128294545 | 3 |   |   | AC011172 | 128294545 | 1 | 66299 | 2206 | 22667 | 91172 |
| S/G/Y/R/B/O |
NT_009534 | AC087894 | 128294545 | 3 |   |   | AC112500 | 128384071 | 1 | 43530 | 2792 | 9386 | 55708 |
| S/G/Y/R/B/O |
NT_009534 | AC078959 | 128384071 | 1 | chr12 | NT_009534 | AC024105 | 128471806 | 1 | 99276 | 0 | 16599 | 115875 |
| S/G/Y/R/B/O |
NT_009534 | AC078959 | 128384071 | 1 | chr12 | NT_009534 | AC023357 | 128291164 | 1 | 31259 | 0 | 27950 | 59209 |
| S/G/Y/R/B/O |
NT_009534 | AC078959 | 128384071 | 1 | chr12 | NT_009534 | AC074345 | 128481362 | 1 | 61378 | 0 | 31589 | 92967 |
| S/G/Y/R/B/O |
NT_009534 | AC078959 | 128384071 | 1 |   |   | AC011172 | 128384071 | 1 | 28348 | 1552 | 9961 | 39861 |
| S/G/Y/R/B/O |
NT_009534 | AC078959 | 128384071 | 1 |   |   | AC112500 | 128294545 | 1 | 30653 | 0 | 2470 | 33123 |
| S/G/Y/R/B/O |
NT_009534 | AC024105 | 128471806 | 1 | chr12 | NT_009534 | AC074345 | 128481362 | 1 | 9922 | 0 | 36845 | 46767 |
| S/G/Y/R/B/O |
NT_009534 | AC024105 | 128471806 | 1 | chr12 | NT_009534 | AC023357 | 128291164 | 1 | 11961 | 1118 | 12942 | 26021 |
| S/G/Y/R/B/O |
NT_009534 | AC024105 | 128471806 | 1 | chr12 | NT_009534 | AC087894 | 128294545 | 3 | 123445 | 0 | 0 | 123445 |
| S/G/Y/R/B/O |
NT_009534 | AC024105 | 128471806 | 1 |   |   | AC011172 | 128294545 | 1 | 22179 | 0 | 0 | 22179 |
| S/G/Y/R/B/O |
NT_009534 | AC024105 | 128471806 | 1 |   |   | AC112500 | 128294545 | 1 | 20760 | 0 | 4080 | 24840 |
| S/G/Y/R/B/O |
NT_009534 | AC074345 | 128481362 | 1 | chr12 | NT_009534 | AC108723 | 128569899 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009534 | AC074345 | 128481362 | 1 | chr12 | NT_009534 | AC078959 | 128384071 | 1 | 61378 | 0 | 31589 | 92967 |
| S/G/Y/R/B/O |
NT_009534 | AC074345 | 128481362 | 1 | chr12 | NT_009534 | AC087894 | 128294545 | 3 | 44303 | 0 | 39246 | 83549 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC034280 | 128575698 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC023584 | 128089039 | 1 | 80838 | 10450 | 6160 | 97448 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC025252 | 128091524 | 1 | 76680 | 10450 | 24961 | 112091 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC026944 | 128148101 | 1 | 50999 | 10449 | 0 | 61448 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC027292 | 127898485 | 1 | 13257 | 0 | 6160 | 19417 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 | chr12 | NT_009534 | AC068787 | 127934620 | 1 | 83101 | 2011 | 23375 | 108487 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 |   |   | AC024596 | 120325755 | 1 | 13426 | 0 | 2612 | 16038 |
| S/G/Y/R/B/O |
NT_009534 | AC108723 | 128569899 | 1 |   |   | AC048347 | 127898485 | 1 | 14461 | 2319 | 3881 | 20661 |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 | chr12 | NT_009534 | AC011565 | 127566243 | 1 | 15718 | 2554 | 0 | 18272 |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 | chr12 | NT_009534 | AC073913 | 127786011 | 3 | 35054 | 0 | 1291 | 36345 |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 | chr12 | NT_009534 | AC079949 | 127597883 | 1 | 102505 | 9019 | 6074 | 117598 |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 | chr12 | NT_009534 | AC090117 | 127663336 | 1 | 15381 | 2554 | 0 | 17935 |
| S/G/Y/R/B/O |
NT_009534 | AC034280 | 128575698 | 1 |   |   | AC016836 | 127566243 | 1 | 49064 | 0 | 0 | 49064 |
| |
|
|
|