|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_007666 | AF104455 | 154105923 | 3 | chr7 | NT_007666 | AC079809 | 154177276 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC079809 | 154177276 | 3 | chr7 | NT_007666 | AF109076 | 154278194 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_007666 | AC079809 | 154177276 | 3 |   |   | AF145206 | 154278194 | 2 | 34145 | 0 | 0 | 34145 |
| S/G/Y/R/B/O |
NT_007666 | AF109076 | 154278194 | 3 | chr7 | NT_007666 | AC073236 | 154389539 | 3 | 85373 | 0 | 0 | 85373 |
| S/G/Y/R/B/O |
NT_007666 | AF109076 | 154278194 | 3 |   |   | AF145206 | 154177276 | 2 | 113199 | 0 | 0 | 113199 |
| S/G/Y/R/B/O |
NT_007666 | AC073236 | 154389539 | 3 | chr7 | NT_007666 | AC091652 | 154474686 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC073236 | 154389539 | 3 |   |   | AC016222 | 154177276 | 1 | 114490 | 0 | 0 | 114490 |
| S/G/Y/R/B/O |
NT_007666 | AC073236 | 154389539 | 3 |   |   | AF145206 | 154278194 | 2 | 96927 | 0 | 0 | 96927 |
| S/G/Y/R/B/O |
NT_007666 | AC091652 | 154474686 | 3 | chr7 | NT_007666 | AC091744 | 154518607 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_007666 | AC091652 | 154474686 | 3 |   |   | AC016222 | 154278194 | 1 | 44109 | 0 | 0 | 44109 |
| S/G/Y/R/B/O |
NT_007666 | AC091744 | 154518607 | 3 | chr7 | NT_007666 | AC092033 | 154539639 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_007666 | AC092033 | 154539639 | 3 | chr7 | NT_007666 | AC005998 | 154756370 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC092033 | 154539639 | 3 |   |   | AC093717 | 154518607 | 1 | 65780 | 0 | 62855 | 128635 |
| S/G/Y/R/B/O |
NT_007666 | AC005998 | 154756370 | 3 | chr7 | NT_007666 | AC006973 | 154851753 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC005998 | 154756370 | 3 |   |   | AC022641 | 150820364 | 1 | 52055 | 6604 | 966 | 59625 |
| S/G/Y/R/B/O |
NT_007666 | AC005998 | 154756370 | 3 |   |   | AC093717 | 150820364 | 1 | 55406 | 0 | 8667 | 64073 |
| S/G/Y/R/B/O |
NT_007666 | AC006973 | 154851753 | 3 | chr7 | NT_007666 | AC005588 | 154922033 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC006973 | 154851753 | 3 |   |   | AC022641 | 150820364 | 1 | 58120 | 9055 | 0 | 67175 |
| S/G/Y/R/B/O |
NT_007666 | AC005588 | 154922033 | 3 | chr7 | NT_007666 | AC006019 | 155041316 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC005588 | 154922033 | 3 |   |   | AC022641 | 150820364 | 1 | 20019 | 0 | 3263 | 23282 |
| S/G/Y/R/B/O |
NT_007666 | AC006019 | 155041316 | 3 | chr7 | NT_007666 | AC104594 | 155165731 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_007666 | AC104594 | 155165731 | 3 | chr7 | NT_007666 | AC099341 | 155318396 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_007666 | AC099341 | 155318396 | 3 | chr7 | NT_007666 | AC007129 | 155368335 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_007666 | AC007129 | 155368335 | 3 | chr7 | NT_007666 | AC024730 | 155477439 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC007129 | 155368335 | 3 |   |   | AC099649 | 155318396 | 1 | 105185 | 0 | 2988 | 108173 |
| S/G/Y/R/B/O |
NT_007666 | AC024730 | 155477439 | 3 | chr7 | NT_007666 | AC024239 | 155638437 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007666 | AC024730 | 155477439 | 3 |   |   | AC099649 | 155318396 | 1 | 68456 | 1547 | 0 | 70003 |
| S/G/Y/R/B/O |
NT_007666 | AC024239 | 155638437 | 3 | chr7 | NT_007666 | AC073336 | 155795095 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_007666 | AC073336 | 155795095 | 3 | chr7 | NT_007666 | AC073077 | 155961156 | 1 | 73817 | 1699 | 7346 | 82862 |
| S/G/Y/R/B/O |
NT_007666 | AC073077 | 155961156 | 1 | chr7 | NT_007666 | AC093726 | 155965457 | 3 | 64997 | 0 | 0 | 64997 |
| S/G/Y/R/B/O |
NT_007666 | AC093726 | 155965457 | 3 | chr7 | NT_007666 | AC092628 | 156120191 | 3 | 0 | 1988 | 0 | 1988 |
| S/G/Y/R/B/O |
NT_007666 | AC093726 | 155965457 | 3 |   |   | AC074285 | 155961156 | 1 | 39918 | 0 | 0 | 39918 |
| S/G/Y/R/B/O |
NT_007666 | AC092628 | 156120191 | 3 | chr7 | NT_007666 | AC099552 | 156262687 | 3 | 114402 | 0 | 0 | 114402 |
| S/G/Y/R/B/O |
NT_007666 | AC092628 | 156120191 | 3 |   |   | AC074285 | 156120191 | 1 | 92685 | 0 | 16676 | 109361 |
| S/G/Y/R/B/O |
NT_007666 | AC099552 | 156262687 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_007666 | AC099552 | 156262687 | 3 |   |   | AC074285 | 156262687 | 1 | 80108 | 0 | 0 | 80108 |
| |
|
|
|