Chromosome 7 - Clone Overlaps

Chromosome 7 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_029998	NT_007968	NT_033967	NT_033174	NT_033965	NT_007819	NT_033177	NT_023530
NT_030008	NT_033968	NT_023629	NT_028235	NT_030001	NT_033184	NT_033969	NT_007758
NT_007834	NT_017168	NT_033966	NT_033176	NT_033964	NT_007930	NT_029999	NT_033180
NT_007912	NT_023632	NT_007933	NT_030012	NT_023649	NT_007688	NT_027067	NT_033179
NT_033181	NT_007914	NT_033182	NT_033175	NT_007666	NT_007905	NT_007741	NT_028233

NT_007688

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_007688	AC105443	131018783	1	chr7	NT_007688	AC093182	131069877	1	68489	2425	0	70914
S/G/Y/R/B/O	NT_007688	AC105443	131018783	1	chr7	NT_007688	AC018643	132376359	3	57852	0	3120	60972
S/G/Y/R/B/O	NT_007688	AC093182	131069877	1	chr7	NT_007688	AC009518	131119609	3	80369	0	0	80369
S/G/Y/R/B/O	NT_007688	AC009518	131119609	3	chr7	NT_007688	AC008085	131210783	3	85034	0	0	85034
S/G/Y/R/B/O	NT_007688	AC008085	131210783	3	chr7	NT_007688	AC093106	131388069	1	49859	0	0	49859
S/G/Y/R/B/O	NT_007688	AC093106	131388069	1	chr7	NT_007688	AC016831	131404949	3	0	0	0	0
S/G/Y/R/B/O	NT_007688	AC093106	131388069	1	chr7	NT_007688	AC008264	132177932	3	17256	2757	55410	75423
S/G/Y/R/B/O	NT_007688	AC016831	131404949	3	chr7	NT_007688	AC058791	131597717	3	57251	0	0	57251
S/G/Y/R/B/O	NT_007688	AC016831	131404949	3	chr7	NT_023649	AF017104	130807628	3	111197	0	0	111197
S/G/Y/R/B/O	NT_007688	AC058791	131597717	3	chr7	NT_007688	AC013434	131704394	3	5215	0	0	5215
S/G/Y/R/B/O	NT_007688	AC058791	131597717	3	chr7	NT_023649	AF017104	130807628	3	103799	0	0	103799
S/G/Y/R/B/O	NT_007688	AC058791	131597717	3			AC011885	130807628	1	27975	0	0	27975
S/G/Y/R/B/O	NT_007688	AC013434	131704394	3	chr7	NT_007688	AC009362	131848278	3	9311	0	0	9311
S/G/Y/R/B/O	NT_007688	AC013434	131704394	3			AC011885	131848278	1	140042	4829	0	144871
S/G/Y/R/B/O	NT_007688	AC009362	131848278	3	chr7	NT_007688	AC018642	131999096	3	73839	0	0	73839
S/G/Y/R/B/O	NT_007688	AC009362	131848278	3			AC023959	131999096	1	113927	17614	7074	138615
S/G/Y/R/B/O	NT_007688	AC018642	131999096	3	chr7	NT_007688	AC009783	132119782	3	111167	0	0	111167
S/G/Y/R/B/O	NT_007688	AC018642	131999096	3	chr7	NT_007688	AC023774	132316187	1	82519	1753	13319	97591
S/G/Y/R/B/O	NT_007688	AC018642	131999096	3			AC023959	132316187	1	59291	11038	2484	72813
S/G/Y/R/B/O	NT_007688	AC009783	132119782	3	chr7	NT_007688	AC008264	132177932	3	25215	0	0	25215
S/G/Y/R/B/O	NT_007688	AC009783	132119782	3	chr7	NT_007688	AC023774	132316187	1	105482	1753	16215	123450
S/G/Y/R/B/O	NT_007688	AC008264	132177932	3	chr7	NT_007688	AC023774	132316187	1	0	0	0	0
S/G/Y/R/B/O	NT_007688	AC008264	132177932	3	chr7	NT_007688	AC093106	131388069	1	17256	2757	55410	75423
S/G/Y/R/B/O	NT_007688	AC008264	132177932	3			AC079343	132119782	1	21117	5834	45596	72547
S/G/Y/R/B/O	NT_007688	AC023774	132316187	1	chr7	NT_007688	AC018643	132376359	3	0	0	0	0
S/G/Y/R/B/O	NT_007688	AC023774	132316187	1	chr7	NT_007688	AC009783	132119782	3	105482	1753	16215	123450
S/G/Y/R/B/O	NT_007688	AC023774	132316187	1	chr7	NT_007688	AC018642	131999096	3	82519	1753	13319	97591
S/G/Y/R/B/O	NT_007688	AC018643	132376359	3	chr7	NT_007688	AC009364	132574829	3	64359	0	0	64359
S/G/Y/R/B/O	NT_007688	AC018643	132376359	3	chr7	NT_007688	AC105443	131018783	1	57852	0	3120	60972
S/G/Y/R/B/O	NT_007688	AC009364	132574829	3	chr7	NT_007688	AC011625	132661627	3	51735	0	0	51735
S/G/Y/R/B/O	NT_007688	AC011625	132661627	3	chr7	NT_007688	AC009785	132797980	3	73208	0	0	73208
S/G/Y/R/B/O	NT_007688	AC011625	132661627	3			AC009723	132574829	1	65714	2640	0	68354
S/G/Y/R/B/O	NT_007688	AC009785	132797980	3	chr7	NT_007688	AC026239	132903807	3	38201	0	0	38201
S/G/Y/R/B/O	NT_007688	AC009785	132797980	3			AC009723	132797980	1	102971	5381	1361	109713
S/G/Y/R/B/O	NT_007688	AC026239	132903807	3	chr7	NT_007688	AC009365	133019220	3	104508	0	0	104508
S/G/Y/R/B/O	NT_007688	AC009365	133019220	3	chr7	NT_007688	AC093145	133137479	1	0	1299	0	1299
S/G/Y/R/B/O	NT_007688	AC093145	133137479	1	chr7	NT_007688	AC008038	133145674	3	2543	0	0	2543
S/G/Y/R/B/O	NT_007688	AC008038	133145674	3	chr7	NT_007688	AC083873	133346075	3	54474	0	0	54474
S/G/Y/R/B/O	NT_007688	AC008038	133145674	3			AC083901	133346075	1	64183	0	0	64183
S/G/Y/R/B/O	NT_007688	AC083873	133346075	3	chr7	NT_007688	AC093146	133453231	3	2238	0	0	2238
S/G/Y/R/B/O	NT_007688	AC083873	133346075	3			AC083901	133145674	1	111012	0	37170	148182
S/G/Y/R/B/O	NT_007688	AC093146	133453231	3	chr7	NT_007688	AC083875	133483360	3	0	0	0	0
S/G/Y/R/B/O	NT_007688	AC093146	133453231	3			AC083901	133346075	1	17738	0	0	17738
S/G/Y/R/B/O	NT_007688	AC083875	133483360	3	chr7	NT_007688	AC024086	133633173	3	28267	0	0	28267
S/G/Y/R/B/O	NT_007688	AC083875	133483360	3			AC079379	133633173	1	70409	11794	40650	122853
S/G/Y/R/B/O	NT_007688	AC024086	133633173	3	chr7	NT_007688	AC009358	133758089	3	149615	0	0	149615
S/G/Y/R/B/O	NT_007688	AC024086	133633173	3			AC079379	133758089	1	37596	0	18141	55737
S/G/Y/R/B/O	NT_007688	AC009358	133758089	3	chr7	NT_007688	AC009178	133793574	3	11351	0	0	11351
S/G/Y/R/B/O	NT_007688	AC009358	133758089	3			AC079379	133633173	1	37568	0	12593	50161
S/G/Y/R/B/O	NT_007688	AC009178	133793574	3	chr7	NT_007688	AC007790	133960318	3	72348	0	0	72348
S/G/Y/R/B/O	NT_007688	AC007790	133960318	3	chr7	NT_007688	AC009180	134095756	3	40654	0	0	40654
S/G/Y/R/B/O	NT_007688	AC009180	134095756	3	chr7	NT_007688	AC093147	134218374	3	0	1178	0	1178
S/G/Y/R/B/O	NT_007688	AC093147	134218374	3	chr7	NT_007688	AC083872	134230153	3	5041	0	0	5041
S/G/Y/R/B/O	NT_007688	AC083872	134230153	3	chr7	NT_007688	AC018646	134416762	3	13595	0	0	13595
S/G/Y/R/B/O	NT_007688	AC083872	134230153	3	chr7	NT_033175	AC012130	153903820	1	46351	0	11482	57833
S/G/Y/R/B/O	NT_007688	AC018646	134416762	3	chr7	NT_007688	AC008154	134587865	3	94361	0	0	94361
S/G/Y/R/B/O	NT_007688	AC018646	134416762	3	chr7	NT_033175	AC012130	153903820	1	90310	0	0	90310
S/G/Y/R/B/O	NT_007688	AC008154	134587865	3	chr7	NT_007688	AC009275	134665337	3	77156	0	0	77156
S/G/Y/R/B/O	NT_007688	AC008154	134587865	3			AP002452	134416762	1	10098	0	0	10098
S/G/Y/R/B/O	NT_007688	AC009275	134665337	3	chr7	NT_007688	AC078847	134742276	3	33532	0	0	33532
S/G/Y/R/B/O	NT_007688	AC009275	134665337	3			AC055757	134587865	1	17958	2268	0	20226
S/G/Y/R/B/O	NT_007688	AC009275	134665337	3			AC073235	134587865	1	46286	3276	1081	50643
S/G/Y/R/B/O	NT_007688	AC009275	134665337	3			AP002452	134742276	1	72588	2400	14431	89419
S/G/Y/R/B/O	NT_007688	AC078847	134742276	3	chr7	NT_007688	AC009276	134879630	3	78548	0	0	78548
S/G/Y/R/B/O	NT_007688	AC078847	134742276	3			AC055757	134879630	1	57128	5187	62644	124959
S/G/Y/R/B/O	NT_007688	AC078847	134742276	3			AC073235	134879630	1	145987	1530	4211	151728
S/G/Y/R/B/O	NT_007688	AC078847	134742276	3			AP002452	134964712	1	102120	5038	973	108131
S/G/Y/R/B/O	NT_007688	AC009276	134879630	3	chr7	NT_007688	AC083874	134964712	3	94807	0	0	94807
S/G/Y/R/B/O	NT_007688	AC009276	134879630	3			AC055757	134964712	1	18860	0	41699	60559
S/G/Y/R/B/O	NT_007688	AC009276	134879630	3			AC073235	134964712	1	57053	0	1769	58822
S/G/Y/R/B/O	NT_007688	AC009276	134879630	3			AP002452	134964712	1	15701	0	973	16674
S/G/Y/R/B/O	NT_007688	AC083874	134964712	3	chr7	NT_007688	AC019014	135056179	3	34697	0	0	34697
S/G/Y/R/B/O	NT_007688	AC083874	134964712	3			AC055757	135056179	1	10433	0	0	10433
S/G/Y/R/B/O	NT_007688	AC019014	135056179	3	chr7	NT_007688	AC083870	135177132	3	76225	0	0	76225
S/G/Y/R/B/O	NT_007688	AC083870	135177132	3	chr7	NT_007688	AC090497	135272434	3	31509	0	0	31509
S/G/Y/R/B/O	NT_007688	AC090497	135272434	3	chr7	NT_007688	AC083862	135410061	3	107127	0	0	107127
S/G/Y/R/B/O	NT_007688	AC083862	135410061	3	chr7	NT_007688	AC009542	135465859	3	34386	0	0	34386
S/G/Y/R/B/O	NT_007688	AC083862	135410061	3	chr7	NT_007688	AC009330	135591838	3	31493	0	0	31493
S/G/Y/R/B/O	NT_007688	AC009542	135465859	3	chr7	NT_007688	AC009330	135591838	3	157235	0	0	157235
S/G/Y/R/B/O	NT_007688	AC009330	135591838	3	chr7	NT_007688	AC093143	135609061	3	0	768	0	768
S/G/Y/R/B/O	NT_007688	AC009330	135591838	3	chr7	NT_007688	AC083862	135410061	3	31493	0	0	31493
S/G/Y/R/B/O	NT_007688	AC093143	135609061	3	chr7	NT_007688	AC009331	135632036	3	5198	0	0	5198
S/G/Y/R/B/O	NT_007688	AC009331	135632036	3	chr7	NT_007688	AC083871	135785115	3	102800	0	0	102800
S/G/Y/R/B/O	NT_007688	AC009331	135632036	3			AC074002	135632036	1	30177	0	115830	146007
S/G/Y/R/B/O	NT_007688	AC083871	135785115	3	chr7	NT_007688	AC093107	135833059	3	16879	0	0	16879
S/G/Y/R/B/O	NT_007688	AC083871	135785115	3			AC074002	135632036	1	59623	0	19692	79315
S/G/Y/R/B/O	NT_007688	AC093107	135833059	3	chr7	NT_007688	AC091736	136013981	3	71613	0	0	71613
S/G/Y/R/B/O	NT_007688	AC091736	136013981	3	chr7	NT_007688	AC015987	136098726	3	15088	0	0	15088
S/G/Y/R/B/O	NT_007688	AC015987	136098726	3	chr7	NT_007688	AC024083	136265489	3	83562	0	0	83562
S/G/Y/R/B/O	NT_007688	AC024083	136265489	3	chr7	NT_007688	AC024084	136334209	3	26646	0	0	26646
S/G/Y/R/B/O	NT_007688	AC024084	136334209	3	chr7	NT_007688	AC009784	136491227	3	59634	0	0	59634
S/G/Y/R/B/O	NT_007688	AC009784	136491227	3	chr7	NT_007688	AC078845	136597294	3	34936	0	0	34936
S/G/Y/R/B/O	NT_007688	AC078845	136597294	3	chr7	NT_007688	AC093148	136723853	3	0	1296	0	1296
S/G/Y/R/B/O	NT_007688	AC093148	136723853	3	chr7	NT_007688	AC009541	136737390	3	0	1592	0	1592
S/G/Y/R/B/O	NT_007688	AC009541	136737390	3	chr7	NT_007688	AC083869	136886264	3	107732	0	0	107732
S/G/Y/R/B/O	NT_007688	AC083869	136886264	3	chr7	NT_007688	AC108510	136950850	1	3709	0	0	3709
S/G/Y/R/B/O	NT_007688	AC108510	136950850	1	chr7	NT_007688	AC009264	137035926	3	66813	2618	3487	72918
S/G/Y/R/B/O	NT_007688	AC108510	136950850	1			AC009332	137035926	3	91126	2619	961	94706
S/G/Y/R/B/O	NT_007688	AC009264	137035926	3	chr7	NT_007688	AC020581	137200750	3	5201	0	0	5201
S/G/Y/R/B/O	NT_007688	AC009264	137035926	3			AC009332	136886264	3	125082	0	0	125082
S/G/Y/R/B/O	NT_007688	AC020581	137200750	3	chr7	NT_007688	AC009329	137348533	3	147547	0	0	147547
S/G/Y/R/B/O	NT_007688	AC009329	137348533	3	chr7	NT_007688	AC009517	137361338	3	8684	0	0	8684
S/G/Y/R/B/O	NT_007688	AC009517	137361338	3	chr7	NT_007688	AC018728	137494039	3	4302	0	0	4302
S/G/Y/R/B/O	NT_007688	AC009517	137361338	3			AC073470	137494039	1	41268	3792	30694	75754
S/G/Y/R/B/O	NT_007688	AC018728	137494039	3	chr7	NT_007688	AC078842	137671666	3	133539	0	0	133539
S/G/Y/R/B/O	NT_007688	AC018728	137494039	3			AC009401	137494039	3	70883	0	0	70883
S/G/Y/R/B/O	NT_007688	AC018728	137494039	3			AC011036	137361338	1	137135	0	0	137135
S/G/Y/R/B/O	NT_007688	AC018728	137494039	3			AC073470	67125104	1	38645	0	14262	52907
S/G/Y/R/B/O	NT_007688	AC078842	137671666	3	chr7	NT_007688	AC090498	137711735	3	13255	0	0	13255
S/G/Y/R/B/O	NT_007688	AC078842	137671666	3			AC009401	137671666	3	110771	0	0	110771
S/G/Y/R/B/O	NT_007688	AC078842	137671666	3			AC011036	137671666	1	88853	0	0	88853
S/G/Y/R/B/O	NT_007688	AC090498	137711735	3	chr7	NT_007688	AC009179	137886500	3	89338	0	0	89338
S/G/Y/R/B/O	NT_007688	AC090498	137711735	3			AC009401	137886500	3	24359	0	0	24359
S/G/Y/R/B/O	NT_007688	AC090498	137711735	3			AC073250	137886500	1	93909	0	0	93909
S/G/Y/R/B/O	NT_007688	AC090498	137711735	3			AC074001	137886500	1	125950	12488	41000	179438
S/G/Y/R/B/O	NT_007688	AC009179	137886500	3	chr7	NT_007688	AC009245	137976559	3	72780	0	0	72780
S/G/Y/R/B/O	NT_007688	AC009179	137886500	3			AC073250	137976559	1	83732	0	39749	123481
S/G/Y/R/B/O	NT_007688	AC009179	137886500	3			AC074001	137976559	1	71920	3436	0	75356
S/G/Y/R/B/O	NT_007688	AC009245	137976559	3	chr7	NT_007688	AC022173	138101359	3	19308	0	0	19308
S/G/Y/R/B/O	NT_007688	AC009245	137976559	3			AC073250	138101359	1	35254	0	0	35254
S/G/Y/R/B/O	NT_007688	AC022173	138101359	3	chr7	NT_007688	AC009263	138237181	3	85206	0	0	85206
S/G/Y/R/B/O	NT_007688	AC009263	138237181	3	chr7	NT_007688	AC024082	138334295	3	41622	0	0	41622
S/G/Y/R/B/O	NT_007688	AC009263	138237181	3			AC016358	138237181	1	34882	0	0	34882
S/G/Y/R/B/O	NT_007688	AC009263	138237181	3			AC024398	138334295	1	13632	2666	0	16298
S/G/Y/R/B/O	NT_007688	AC024082	138334295	3	chr7	NT_007688	AC083867	138449868	3	71826	0	0	71826
S/G/Y/R/B/O	NT_007688	AC024082	138334295	3			AC016358	138237181	1	139576	6548	2453	148577
S/G/Y/R/B/O	NT_007688	AC024082	138334295	3			AC024398	138237181	1	76722	12053	16207	104982
S/G/Y/R/B/O	NT_007688	AC024082	138334295	3			AC079800	138237181	1	42675	5481	13331	61487
S/G/Y/R/B/O	NT_007688	AC083867	138449868	3	chr7	NT_007688	AC008155	138526056	3	30677	0	0	30677
S/G/Y/R/B/O	NT_007688	AC083867	138449868	3			AC016358	138526056	1	28455	2160	2447	33062
S/G/Y/R/B/O	NT_007688	AC083867	138449868	3			AC024398	138334295	1	61665	9168	19486	90319
S/G/Y/R/B/O	NT_007688	AC083867	138449868	3			AC079800	138334295	1	49989	12328	32642	94959
S/G/Y/R/B/O	NT_007688	AC008155	138526056	3	chr7	NT_007688	AC025593	138671526	3	111967	0	0	111967
S/G/Y/R/B/O	NT_007688	AC008155	138526056	3			AC079800	138671526	1	34470	6055	13689	54214
S/G/Y/R/B/O	NT_007688	AC025593	138671526	3	chr7	NT_007688	AC008265	138743811	3	66991	0	0	66991
S/G/Y/R/B/O	NT_007688	AC008265	138743811	3	chr7	NT_007688	AC013429	138847357	3	103552	0	0	103552
S/G/Y/R/B/O	NT_007688	AC013429	138847357	3	chr7	NT_007688	AC020983	138923427	3	72311	0	0	72311
S/G/Y/R/B/O	NT_007688	AC020983	138923427	3	chr7	NT_007688	AC018663	139025407	3	67818	0	0	67818
S/G/Y/R/B/O	NT_007688	AC018663	139025407	3	chr7	NT_007688	AC093144	139127940	3	0	901	0	901
S/G/Y/R/B/O	NT_007688	AC093144	139127940	3	chr7	NT_007688	AC083868	139170732	3	0	1017	0	1017
S/G/Y/R/B/O	NT_007688	AC083868	139170732	3	chr7	NT_007688	AC018644	139353212	3	0	0	0	0
S/G/Y/R/B/O	NT_007688	AC083868	139170732	3			AC027253	139170732	1	101544	9048	1303	111895
S/G/Y/R/B/O	NT_007688	AC083868	139170732	3			AC079986	139170732	1	55445	4097	0	59542
S/G/Y/R/B/O	NT_007688	AC083868	139170732	3			AL162791	139127940	2	50681	2835	107576	161092
S/G/Y/R/B/O	NT_007688	AC018644	139353212	3	chr7	NT_007688	AC009220	139509374	3	91287	0	0	91287
S/G/Y/R/B/O	NT_007688	AC018644	139353212	3			AC027253	139509374	1	32680	7611	0	40291
S/G/Y/R/B/O	NT_007688	AC018644	139353212	3			AC079986	139509374	1	137454	1891	0	139345
S/G/Y/R/B/O	NT_007688	AC018644	139353212	3			AL162791	139509374	2	47979	0	0	47979
S/G/Y/R/B/O	NT_007688	AC009220	139509374	3	chr7	NT_007688	AC083880	139602589	3	0	1999	0	1999
S/G/Y/R/B/O	NT_007688	AC009220	139509374	3			AC079986	139353212	1	40240	0	0	40240
S/G/Y/R/B/O	NT_007688	AC083880	139602589	3	chr7	NT_007688	AC083883	139639075	3	0	1999	0	1999
S/G/Y/R/B/O	NT_007688	AC083883	139639075	3	chr7	NT_007688	AC005531	139697275	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007688	AC005531	139697275	3	chr7	NT_007688	AC073184	139857185	3	0	0	200	200
S/G/Y/R/B/O	NT_007688	AC073184	139857185	3