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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033966 | AC004977 | 93619489 | 3 | chr7 | NT_033966 | AC004522 | 93680495 | 3 | 45382 | 0 | 0 | 45382 |
| S/G/Y/R/B/O |
NT_033966 | AC004977 | 93619489 | 3 | chr7 | NT_033964 | AC011904 | 99245661 | 3 | 60795 | 0 | 0 | 60795 |
| S/G/Y/R/B/O |
NT_033966 | AC004977 | 93619489 | 3 |   |   | D14034 | 99245661 | 3 | 11685 | 0 | 0 | 11685 |
| S/G/Y/R/B/O |
NT_033966 | AC004977 | 93619489 | 3 |   |   | NG_000004 | 99245661 | 3 | 60795 | 0 | 0 | 60795 |
| S/G/Y/R/B/O |
NT_033966 | AC004522 | 93680495 | 3 | chr7 | NT_033966 | AC093619 | 93778590 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033966 | AC004522 | 93680495 | 3 |   |   | D14034 | 93778590 | 3 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_033966 | AC093619 | 93778590 | 3 | chr7 | NT_033966 | AC073842 | 93819557 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033966 | AC073842 | 93819557 | 3 | chr7 | NT_033966 | AC005071 | 93950321 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033966 | AC073842 | 93819557 | 3 | chr7 | NT_033966 | AC092483 | 94677951 | 1 | 22404 | 6965 | 2304 | 31673 |
| S/G/Y/R/B/O |
NT_033966 | AC005071 | 93950321 | 3 | chr7 | NT_033966 | AC092849 | 94157703 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033966 | AC005071 | 93950321 | 3 | chr7 | NT_033966 | AC005073 | 94688755 | 1 | 10879 | 0 | 135032 | 145911 |
| S/G/Y/R/B/O |
NT_033966 | AC005071 | 93950321 | 3 | chr7 | NT_033966 | AC092483 | 94677951 | 1 | 17167 | 6197 | 21806 | 45170 |
| S/G/Y/R/B/O |
NT_033966 | AC092849 | 94157703 | 3 | chr7 | NT_033966 | AC069281 | 94237106 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033966 | AC069281 | 94237106 | 3 | chr7 | NT_033966 | AC099394 | 94348793 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033966 | AC069281 | 94237106 | 3 |   |   | AF053356 | 94157703 | 3 | 55335 | 0 | 0 | 55335 |
| S/G/Y/R/B/O |
NT_033966 | AC099394 | 94348793 | 3 | chr7 | NT_033966 | AC009488 | 94406817 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033966 | AC099394 | 94348793 | 3 |   |   | AF053356 | 94406817 | 3 | 59917 | 0 | 0 | 59917 |
| S/G/Y/R/B/O |
NT_033966 | AC009488 | 94406817 | 3 | chr7 | NT_033966 | AC011895 | 94505493 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 | chr7 | NT_033966 | AC092483 | 94677951 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 | chr7 | NT_033966 | AC084057 | 94690380 | 1 | 104444 | 0 | 22758 | 127202 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 |   |   | AF053356 | 94690380 | 3 | 30176 | 0 | 0 | 30176 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 |   |   | AF312032 | 94690380 | 3 | 117687 | 0 | 0 | 117687 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 |   |   | AY046055 | 94690380 | 3 | 42858 | 0 | 0 | 42858 |
| S/G/Y/R/B/O |
NT_033966 | AC011895 | 94505493 | 3 |   |   | AY056047 | 94690380 | 3 | 26000 | 0 | 0 | 26000 |
| S/G/Y/R/B/O |
NT_033966 | AC092483 | 94677951 | 1 | chr7 | NT_033966 | AC005073 | 94688755 | 1 | 9156 | 7103 | 11376 | 27635 |
| S/G/Y/R/B/O |
NT_033966 | AC092483 | 94677951 | 1 | chr7 | NT_033966 | AC005071 | 93950321 | 3 | 17167 | 6197 | 21806 | 45170 |
| S/G/Y/R/B/O |
NT_033966 | AC092483 | 94677951 | 1 | chr7 | NT_033966 | AC073842 | 93819557 | 3 | 22404 | 6965 | 2304 | 31673 |
| S/G/Y/R/B/O |
NT_033966 | AC005073 | 94688755 | 1 | chr7 | NT_033966 | AC084057 | 94690380 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033966 | AC005073 | 94688755 | 1 | chr7 | NT_033966 | AC005071 | 93950321 | 3 | 10879 | 0 | 135032 | 145911 |
| S/G/Y/R/B/O |
NT_033966 | AC084057 | 94690380 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033966 | AC084057 | 94690380 | 1 | chr7 | NT_033966 | AC011895 | 94505493 | 3 | 104444 | 0 | 22758 | 127202 |
| S/G/Y/R/B/O |
NT_033966 | AC084057 | 94690380 | 1 |   |   | AF002993 | 94505493 | 3 | 19209 | 0 | 2607 | 21816 |
| S/G/Y/R/B/O |
NT_033966 | AC084057 | 94690380 | 1 |   |   | AF312032 | 94505493 | 3 | 77911 | 0 | 16958 | 94869 |
| S/G/Y/R/B/O |
NT_033966 | AC084057 | 94690380 | 1 |   |   | AY046055 | 94505493 | 3 | 17744 | 0 | 0 | 17744 |
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