|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr7 | NT_029998 | AC097647 | 1221 | 3 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr1 | NT_004525 | AC073135 | 215757090 | 3 | 30468 | 0 | 0 | 30468 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr1 | NT_004525 | AC073186 | 215590273 | 3 | 30555 | 0 | 0 | 30555 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr7 | NT_029998 | AC097645 | 55204 | 3 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr7 | NT_029998 | AC097646 | 65013 | 3 | 30655 | 0 | 0 | 30655 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr7 | NT_029998 | AC112517 | 46691 | 3 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 | chr1 | NT_032954 | AL669831 | 188205 | 1 | 30365 | 0 | 0 | 30365 |
| S/G/Y/R/B/O |
NT_029998 | AC099546 | 1 | 1 |   |   | AL627309 | 223510050 | 2 | 30556 | 0 | 0 | 30556 |
| S/G/Y/R/B/O |
NT_029998 | AC097647 | 1221 | 3 | chr7 | NT_029998 | AC112517 | 46691 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029998 | AC097647 | 1221 | 3 |   |   | AC115287 | 9831848 | 1 | 12109 | 2337 | 0 | 14446 |
| S/G/Y/R/B/O |
NT_029998 | AC112517 | 46691 | 3 | chr7 | NT_029998 | AC097645 | 55204 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029998 | AC112517 | 46691 | 3 | chr11 | NT_009407 | AC069287 | 1 | 1 | 37993 | 0 | 0 | 37993 |
| S/G/Y/R/B/O |
NT_029998 | AC112517 | 46691 | 3 | chr1 | NT_004525 | AC073135 | 215757090 | 3 | 39180 | 0 | 0 | 39180 |
| S/G/Y/R/B/O |
NT_029998 | AC112517 | 46691 | 3 | chr7 | NT_029998 | AC099546 | 1 | 1 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_029998 | AC112517 | 46691 | 3 |   |   | AC115287 | 9831848 | 1 | 12109 | 2337 | 0 | 14446 |
| S/G/Y/R/B/O |
NT_029998 | AC097645 | 55204 | 3 | chr7 | NT_029998 | AC097646 | 65013 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029998 | AC097645 | 55204 | 3 | chr11 | NT_009407 | AC069287 | 1 | 1 | 39039 | 0 | 0 | 39039 |
| S/G/Y/R/B/O |
NT_029998 | AC097645 | 55204 | 3 | chr1 | NT_004525 | AC073135 | 215757090 | 3 | 40046 | 0 | 0 | 40046 |
| S/G/Y/R/B/O |
NT_029998 | AC097645 | 55204 | 3 | chr7 | NT_029998 | AC099546 | 1 | 1 | 14665 | 0 | 0 | 14665 |
| S/G/Y/R/B/O |
NT_029998 | AC097645 | 55204 | 3 |   |   | AC115287 | 9831848 | 1 | 30796 | 0 | 0 | 30796 |
| S/G/Y/R/B/O |
NT_029998 | AC097646 | 65013 | 3 | chr7 | NT_029998 | AC093686 | 77325 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029998 | AC097646 | 65013 | 3 | chr11 | NT_009407 | AC069287 | 1 | 1 | 29042 | 0 | 0 | 29042 |
| S/G/Y/R/B/O |
NT_029998 | AC097646 | 65013 | 3 | chr7 | NT_029998 | AC099546 | 1 | 1 | 30655 | 0 | 0 | 30655 |
| S/G/Y/R/B/O |
NT_029998 | AC097646 | 65013 | 3 |   |   | AC115287 | 190937668 | 1 | 11320 | 0 | 0 | 11320 |
| S/G/Y/R/B/O |
NT_029998 | AC093686 | 77325 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_029998 | AC093686 | 77325 | 3 |   |   | AC093614 | 1 | 3 | 68571 | 0 | 0 | 68571 |
| S/G/Y/R/B/O |
NT_029998 | AC093686 | 77325 | 3 |   |   | AC093627 | 1 | 3 | 178218 | 0 | 0 | 178218 |
| S/G/Y/R/B/O |
NT_029998 | AC093686 | 77325 | 3 |   |   | AC093666 | 1 | 3 | 154591 | 0 | 0 | 154591 |
| |
|
|
|