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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_027067 | AC006021 | 139978592 | 3 | chr7 | NT_027067 | AC004914 | 140076832 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC004914 | 140076832 | 3 | chr7 | NT_027067 | AC004961 | 140220401 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC004961 | 140220401 | 3 | chr7 | NT_027067 | AC025816 | 140288331 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC025816 | 140288331 | 3 | chr7 | NT_027067 | AC004849 | 140297152 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC004849 | 140297152 | 3 | chr7 | NT_027067 | AC005377 | 140423753 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC005377 | 140423753 | 3 | chr7 | NT_027067 | AC093087 | 140525864 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC005377 | 140423753 | 3 |   |   | AC091440 | 140288331 | 1 | 60427 | 8351 | 23069 | 91847 |
| S/G/Y/R/B/O |
NT_027067 | AC093087 | 140525864 | 3 | chr7 | NT_027067 | AC069335 | 140646903 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC093087 | 140525864 | 3 |   |   | AC091440 | 140288331 | 1 | 21834 | 2567 | 13498 | 37899 |
| S/G/Y/R/B/O |
NT_027067 | AC093087 | 140525864 | 3 |   |   | AC093695 | 140288331 | 1 | 25063 | 2328 | 24006 | 51397 |
| S/G/Y/R/B/O |
NT_027067 | AC069335 | 140646903 | 3 | chr7 | NT_027067 | AC006452 | 140800427 | 3 | 0 | 1992 | 0 | 1992 |
| S/G/Y/R/B/O |
NT_027067 | AC069335 | 140646903 | 3 |   |   | AC023303 | 140800427 | 1 | 11350 | 3694 | 0 | 15044 |
| S/G/Y/R/B/O |
NT_027067 | AC069335 | 140646903 | 3 |   |   | AC092429 | 140800427 | 1 | 22202 | 0 | 0 | 22202 |
| S/G/Y/R/B/O |
NT_027067 | AC069335 | 140646903 | 3 |   |   | AC093695 | 140800427 | 1 | 10739 | 8362 | 39171 | 58272 |
| S/G/Y/R/B/O |
NT_027067 | AC006452 | 140800427 | 3 | chr7 | NT_027067 | AC006344 | 140920132 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC006452 | 140800427 | 3 |   |   | AC023303 | 140920132 | 1 | 95436 | 11069 | 837 | 107342 |
| S/G/Y/R/B/O |
NT_027067 | AC006452 | 140800427 | 3 |   |   | AC092429 | 140646903 | 1 | 121553 | 1665 | 2283 | 125501 |
| S/G/Y/R/B/O |
NT_027067 | AC006344 | 140920132 | 3 | chr7 | NT_027067 | AC079339 | 141047379 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC006344 | 140920132 | 3 |   |   | AC092429 | 141047379 | 1 | 43850 | 0 | 1020 | 44870 |
| S/G/Y/R/B/O |
NT_027067 | AC079339 | 141047379 | 3 | chr7 | NT_027067 | AC006347 | 141048200 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC006347 | 141048200 | 3 | chr7 | NT_027067 | AC006006 | 141117775 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC006006 | 141117775 | 3 | chr7 | NT_027067 | AC006351 | 141253960 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC006006 | 141117775 | 3 |   |   | AC069511 | 141253960 | 1 | 22384 | 0 | 21029 | 43413 |
| S/G/Y/R/B/O |
NT_027067 | AC006351 | 141253960 | 3 | chr7 | NT_027067 | AC006362 | 141282828 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC006351 | 141253960 | 3 |   |   | AC069511 | 141117775 | 1 | 15179 | 2198 | 7170 | 24547 |
| S/G/Y/R/B/O |
NT_027067 | AC006362 | 141282828 | 3 | chr7 | NT_027067 | AC006396 | 141412051 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC006362 | 141282828 | 3 |   |   | AC069511 | 141117775 | 1 | 31186 | 0 | 7084 | 38270 |
| S/G/Y/R/B/O |
NT_027067 | AC006396 | 141412051 | 3 | chr7 | NT_027067 | AC004928 | 141493705 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC004928 | 141493705 | 3 | chr7 | NT_027067 | AC005692 | 141630642 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC005692 | 141630642 | 3 | chr7 | NT_027067 | AC073878 | 141692978 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC073878 | 141692978 | 3 | chr7 | NT_027067 | AC099547 | 141804153 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_027067 | AC099547 | 141804153 | 3 | chr7 | NT_027067 | AC004918 | 141870105 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_027067 | AC004918 | 141870105 | 3 | chr7 | NT_027067 | AC004979 | 141983480 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_027067 | AC004979 | 141983480 | 3 | chr7 | NT_027067 | AC093638 | 142065699 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_027067 | AC093638 | 142065699 | 3 | chr7 | NT_027067 | AC073647 | 142094746 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC093638 | 142065699 | 3 |   |   | AC011654 | 141983480 | 1 | 12371 | 1548 | 0 | 13919 |
| S/G/Y/R/B/O |
NT_027067 | AC093638 | 142065699 | 3 |   |   | AC091651 | 141983480 | 3 | 14433 | 0 | 0 | 14433 |
| S/G/Y/R/B/O |
NT_027067 | AC073647 | 142094746 | 3 | chr7 | NT_027067 | AC091684 | 142265524 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_027067 | AC073647 | 142094746 | 3 |   |   | AC011654 | 141983480 | 1 | 111333 | 8134 | 24092 | 143559 |
| S/G/Y/R/B/O |
NT_027067 | AC091684 | 142265524 | 3 | chr7 | NT_027067 | AC091742 | 142276817 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_027067 | AC091742 | 142276817 | 3 | chr7 | NT_027067 | U66059 | 142465858 | 3 | 21650 | 0 | 0 | 21650 |
| S/G/Y/R/B/O |
NT_027067 | U66059 | 142465858 | 3 | chr7 | NT_027067 | U66060 | 142711336 | 3 | 9638 | 0 | 0 | 9638 |
| S/G/Y/R/B/O |
NT_027067 | U66059 | 142465858 | 3 |   |   | AF009663 | 142276817 | 3 | 11780 | 0 | 0 | 11780 |
| S/G/Y/R/B/O |
NT_027067 | U66059 | 142465858 | 3 |   |   | U07977 | 142276817 | 3 | 10757 | 0 | 0 | 10757 |
| S/G/Y/R/B/O |
NT_027067 | U66060 | 142711336 | 3 | chr7 | NT_027067 | U66061 | 142917120 | 3 | 20617 | 0 | 0 | 20617 |
| S/G/Y/R/B/O |
NT_027067 | U66060 | 142711336 | 3 |   |   | AF009661 | 142711336 | 3 | 35952 | 0 | 0 | 35952 |
| S/G/Y/R/B/O |
NT_027067 | U66060 | 142711336 | 3 |   |   | AF009662 | 142711336 | 3 | 36243 | 0 | 0 | 36243 |
| S/G/Y/R/B/O |
NT_027067 | U66060 | 142711336 | 3 |   |   | AF009663 | 142711336 | 3 | 134534 | 0 | 0 | 134534 |
| S/G/Y/R/B/O |
NT_027067 | U66060 | 142711336 | 3 |   |   | U03115 | 142711336 | 3 | 77722 | 0 | 0 | 77722 |
| S/G/Y/R/B/O |
NT_027067 | U66061 | 142917120 | 3 | chr7 | NT_027067 | AF107256 | 143129153 | 3 | 7686 | 0 | 0 | 7686 |
| S/G/Y/R/B/O |
NT_027067 | AF107256 | 143129153 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_027067 | AF107256 | 143129153 | 3 | chr7 | NT_033181 | AC104597 | 143367409 | 3 | 46339 | 0 | 0 | 46339 |
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