Chromosome 8 - Clone Overlaps

Chromosome 8 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008060	NT_023779	NT_023744	NT_008227	NT_023736	NT_019483	NT_008010	NT_008161
NT_015280	NT_030737	NT_023704	NT_008205	NT_008300	NT_023666	NT_033187	NT_033199
NT_007988	NT_007993	NT_030743	NT_033201	NT_007995	NT_026349	NT_033197	NT_008251
NT_008045	NT_008176	NT_017505	NT_008216	NT_023678	NT_023878	NT_017431	NT_023806
NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101	NT_008050
NT_008231	NT_008026	NT_023673	NT_029343	NT_033186	NT_008218	NT_023672	NT_030735
NT_023660	NT_008183	NT_008166	NT_023676	NT_023821	NT_023732	NT_008209	NT_008055
NT_008186	NT_008292	NT_007972	NT_023682	NT_008117	NT_023717	NT_008007	NT_023693
NT_008059	NT_008046	NT_008144	NT_033198	NT_008048	NT_033200	NT_023670	NT_008289
NT_023742	NT_023811	NT_031821	NT_023705	NT_023663	NT_033191	NT_033195	NT_008157
NT_023726	NT_033196	NT_008023	NT_023715	NT_030744	NT_023709	NT_030741	NT_008150
NT_025796	NT_007994	NT_028251	NT_023662	NT_033193	NT_023838	NT_008104	NT_033185
NT_027068	NT_030032	NT_033192	NT_008127	NT_033194	NT_023747	NT_023684	NT_031818

NT_023811

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023811	AC104257	117243852	2	chr8	NT_023811	AC064802	117340021	2	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC104257	117243852	2	chr8	NT_023811	AC104040	123141332	3	66217	0	0	66217
S/G/Y/R/B/O	NT_023811	AC064802	117340021	2	chr8	NT_023811	AC025881	117521100	3	39515	0	0	39515
S/G/Y/R/B/O	NT_023811	AC025881	117521100	3	chr8	NT_023811	AC016494	117657632	3	91668	0	0	91668
S/G/Y/R/B/O	NT_023811	AC025881	117521100	3			AC067982	117340021	3	48174	0	0	48174
S/G/Y/R/B/O	NT_023811	AC016494	117657632	3	chr8	NT_023811	AC025828	117727391	2	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC016494	117657632	3			AC067982	117521100	3	118010	0	0	118010
S/G/Y/R/B/O	NT_023811	AC025828	117727391	2	chr8	NT_023811	AC091639	117861226	2	103669	0	0	103669
S/G/Y/R/B/O	NT_023811	AC025828	117727391	2			AC067982	117521100	3	48870	0	0	48870
S/G/Y/R/B/O	NT_023811	AC091639	117861226	2	chr8	NT_023811	AC019246	117890265	3	14768	0	0	14768
S/G/Y/R/B/O	NT_023811	AC019246	117890265	3	chr8	NT_023811	AC103864	118045249	3	142772	0	0	142772
S/G/Y/R/B/O	NT_023811	AC103864	118045249	3	chr8	NT_023811	AC023926	118067343	3	9347	0	0	9347
S/G/Y/R/B/O	NT_023811	AC023926	118067343	3	chr8	NT_023811	AC012238	118209349	3	33544	0	0	33544
S/G/Y/R/B/O	NT_023811	AC012238	118209349	3	chr8	NT_023811	AC025479	118332463	1	85085	0	0	85085
S/G/Y/R/B/O	NT_023811	AC025479	118332463	1	chr8	NT_023811	AC068399	118423995	3	73014	0	0	73014
S/G/Y/R/B/O	NT_023811	AC025479	118332463	1	chr8	NT_023811	AC024289	118596881	1	18027	0	0	18027
S/G/Y/R/B/O	NT_023811	AC025479	118332463	1			AF284562	118423995	1	22359	0	0	22359
S/G/Y/R/B/O	NT_023811	AC068399	118423995	3	chr8	NT_023811	AC013815	118493797	2	99709	0	0	99709
S/G/Y/R/B/O	NT_023811	AC068399	118423995	3	chr8	NT_023811	AC024289	118596881	1	68850	0	70583	139433
S/G/Y/R/B/O	NT_023811	AC068399	118423995	3			AF284562	118332463	1	132149	2884	0	135033
S/G/Y/R/B/O	NT_023811	AC013815	118493797	2	chr8	NT_023811	AC024289	118596881	1	28695	0	78777	107472
S/G/Y/R/B/O	NT_023811	AC013815	118493797	2			AF284562	118605091	1	73824	2181	0	76005
S/G/Y/R/B/O	NT_023811	AC024289	118596881	1	chr8	NT_023811	AF178030	118605091	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC024289	118596881	1	chr8	NT_023811	AC025479	118332463	1	18027	0	0	18027
S/G/Y/R/B/O	NT_023811	AC024289	118596881	1	chr8	NT_023811	AC068399	118423995	3	68850	0	70583	139433
S/G/Y/R/B/O	NT_023811	AC024289	118596881	1			AF284562	129925816	1	76347	0	0	76347
S/G/Y/R/B/O	NT_023811	AF178030	118605091	3	chr8	NT_023811	AF130342	118915093	3	32803	0	0	32803
S/G/Y/R/B/O	NT_023811	AF178030	118605091	3			AC023142	118493797	1	89011	2051	38827	129889
S/G/Y/R/B/O	NT_023811	AF178030	118605091	3			AC084171	118493797	2	82419	0	0	82419
S/G/Y/R/B/O	NT_023811	AF130342	118915093	3	chr8	NT_023811	AF130343	119232260	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AF130342	118915093	3			AC073491	118915093	1	136731	0	35091	171822
S/G/Y/R/B/O	NT_023811	AF130342	118915093	3			AC091174	118915093	1	173956	0	4036	177992
S/G/Y/R/B/O	NT_023811	AF130342	118915093	3			AC103863	118915093	3	27540	0	0	27540
S/G/Y/R/B/O	NT_023811	AF130343	119232260	3	chr8	NT_023811	AC090994	119524981	2	10900	0	84813	95713
S/G/Y/R/B/O	NT_023811	AF130343	119232260	3	chr8	NT_023811	AC073959	119629489	1	63440	0	26325	89765
S/G/Y/R/B/O	NT_023811	AF130343	119232260	3			AC103863	119524981	3	140659	0	0	140659
S/G/Y/R/B/O	NT_023811	AC090994	119524981	2	chr8	NT_023811	AC073959	119629489	1	135633	1742	51991	189366
S/G/Y/R/B/O	NT_023811	AC073959	119629489	1	chr8	NT_023811	AC105177	119632387	2	0	0	1313	1313
S/G/Y/R/B/O	NT_023811	AC073959	119629489	1	chr8	NT_023811	AF130343	119232260	3	63440	0	26325	89765
S/G/Y/R/B/O	NT_023811	AC105177	119632387	2	chr8	NT_023811	AC023520	119750616	3	27765	0	0	27765
S/G/Y/R/B/O	NT_023811	AC105177	119632387	2			AC012247	119232260	2	27765	0	0	27765
S/G/Y/R/B/O	NT_023811	AC023520	119750616	3	chr8	NT_023811	AP002905	119885390	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC023520	119750616	3			AC012247	119524981	2	134768	0	0	134768
S/G/Y/R/B/O	NT_023811	AP002905	119885390	3	chr8	NT_023811	AC091707	120005938	1	77475	0	0	77475
S/G/Y/R/B/O	NT_023811	AP002905	119885390	3			AP002850	120005938	3	83380	0	0	83380
S/G/Y/R/B/O	NT_023811	AC091707	120005938	1	chr8	NT_023811	AC016729	120008924	1	7305	0	0	7305
S/G/Y/R/B/O	NT_023811	AC091707	120005938	1			AC087350	120008924	1	15594	0	0	15594
S/G/Y/R/B/O	NT_023811	AC016729	120008924	1	chr8	NT_023811	AP004074	120073043	3	118277	0	0	118277
S/G/Y/R/B/O	NT_023811	AC016729	120008924	1			AC087350	119885390	1	310728	0	1541	312269
S/G/Y/R/B/O	NT_023811	AC016729	120008924	1			AC104391	120005938	2	88386	0	0	88386
S/G/Y/R/B/O	NT_023811	AP004074	120073043	3	chr8	NT_023811	AP003787	120229484	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AP004074	120073043	3			AC087350	120008924	1	240344	0	0	240344
S/G/Y/R/B/O	NT_023811	AP004074	120073043	3			AC104391	120008924	2	147227	0	0	147227
S/G/Y/R/B/O	NT_023811	AP003787	120229484	3	chr8	NT_023811	AC027419	120324808	1	104362	0	0	104362
S/G/Y/R/B/O	NT_023811	AP003787	120229484	3	chr8	NT_023811	AC079196	120332151	1	21766	0	0	21766
S/G/Y/R/B/O	NT_023811	AC027419	120324808	1	chr8	NT_023811	AC023778	120325755	1	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC027419	120324808	1	chr8	NT_023811	AC079196	120332151	1	75090	4251	5669	85010
S/G/Y/R/B/O	NT_023811	AC027419	120324808	1	chr8	NT_023811	AC084114	120341026	3	53567	0	0	53567
S/G/Y/R/B/O	NT_023811	AC027419	120324808	1			AC104391	120341026	2	11818	0	0	11818
S/G/Y/R/B/O	NT_023811	AC023778	120325755	1	chr8	NT_023811	AC079196	120332151	1	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC023778	120325755	1	chr12	NT_009534	AC073913	127786011	3	12671	13021	13192	38884
S/G/Y/R/B/O	NT_023811	AC023778	120325755	1			AC016836	120229484	1	12496	9247	5981	27724
S/G/Y/R/B/O	NT_023811	AC023778	120325755	1			AC048347	128575698	1	14385	18331	22322	55038
S/G/Y/R/B/O	NT_023811	AC079196	120332151	1	chr8	NT_023811	AC084114	120341026	3	120970	4251	5065	130286
S/G/Y/R/B/O	NT_023811	AC079196	120332151	1	chr8	NT_023811	AC026258	120530153	2	56863	0	1578	58441
S/G/Y/R/B/O	NT_023811	AC079196	120332151	1	chr8	NT_023811	AC027419	120324808	1	75090	4251	5669	85010
S/G/Y/R/B/O	NT_023811	AC079196	120332151	1	chr8	NT_023811	AP003787	120229484	3	21766	0	0	21766
S/G/Y/R/B/O	NT_023811	AC084114	120341026	3	chr8	NT_023811	AC026258	120530153	2	83294	0	0	83294
S/G/Y/R/B/O	NT_023811	AC084114	120341026	3	chr8	NT_023811	AC027419	120324808	1	53567	0	0	53567
S/G/Y/R/B/O	NT_023811	AC084114	120341026	3			AP002848	120332151	3	69691	0	0	69691
S/G/Y/R/B/O	NT_023811	AC026258	120530153	2	chr8	NT_023811	AC024329	120617534	3	14101	0	0	14101
S/G/Y/R/B/O	NT_023811	AC026258	120530153	2	chr8	NT_023811	AC079196	120332151	1	56863	0	1578	58441
S/G/Y/R/B/O	NT_023811	AC026258	120530153	2			AP002848	120341026	3	156964	0	0	156964
S/G/Y/R/B/O	NT_023811	AC024329	120617534	3	chr8	NT_023811	AC087361	120762334	2	39311	0	0	39311
S/G/Y/R/B/O	NT_023811	AC024329	120617534	3			AP002848	120762334	3	40014	0	0	40014
S/G/Y/R/B/O	NT_023811	AC087361	120762334	2	chr8	NT_023811	AC022528	120839823	1	132402	0	24137	156539
S/G/Y/R/B/O	NT_023811	AC087361	120762334	2			AC034164	120617534	1	46255	2493	0	48748
S/G/Y/R/B/O	NT_023811	AC087361	120762334	2			AC107628	120617534	2	47570	0	0	47570
S/G/Y/R/B/O	NT_023811	AC022528	120839823	1	chr8	NT_023811	AP004295	120878220	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC022528	120839823	1			AC034164	120617534	1	34730	4572	12109	51411
S/G/Y/R/B/O	NT_023811	AC022528	120839823	1			AC107628	120762334	2	47444	0	0	47444
S/G/Y/R/B/O	NT_023811	AP004295	120878220	3	chr8	NT_023811	AP004291	121032817	3	4711	0	0	4711
S/G/Y/R/B/O	NT_023811	AP004295	120878220	3			AC034164	120762334	1	102531	8024	6684	117239
S/G/Y/R/B/O	NT_023811	AP004295	120878220	3			AC107628	120762334	2	64567	0	282	64849
S/G/Y/R/B/O	NT_023811	AP004295	120878220	3			AF186189	120762334	3	72063	0	0	72063
S/G/Y/R/B/O	NT_023811	AP004291	121032817	3	chr8	NT_023811	AP003475	121186861	3	26879	0	0	26879
S/G/Y/R/B/O	NT_023811	AP004291	121032817	3			AC021937	121032817	1	26102	0	0	26102
S/G/Y/R/B/O	NT_023811	AP003475	121186861	3	chr8	NT_023811	AP003476	121307243	3	43258	0	0	43258
S/G/Y/R/B/O	NT_023811	AP003475	121186861	3			AC020988	120878220	1	43466	0	0	43466
S/G/Y/R/B/O	NT_023811	AP003475	121186861	3			AC021937	120878220	1	106122	0	25214	131336
S/G/Y/R/B/O	NT_023811	AP003475	121186861	3			AC024352	120878220	1	11781	6160	3978	21919
S/G/Y/R/B/O	NT_023811	AP003475	121186861	3			AC087845	104985746	1	45571	1900	0	47471
S/G/Y/R/B/O	NT_023811	AP003476	121307243	3	chr8	NT_023811	AP003493	121443634	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AP003476	121307243	3			AC020988	121032817	1	118154	6296	10978	135428
S/G/Y/R/B/O	NT_023811	AP003476	121307243	3			AC021937	121032817	1	50979	0	0	50979
S/G/Y/R/B/O	NT_023811	AP003476	121307243	3			AC024352	121032817	1	63766	22658	33119	119543
S/G/Y/R/B/O	NT_023811	AP003476	121307243	3			AC087845	104985746	1	137841	5804	1016	144661
S/G/Y/R/B/O	NT_023811	AP003493	121443634	3	chr8	NT_023811	AC023590	121575332	3	107682	0	0	107682
S/G/Y/R/B/O	NT_023811	AP003493	121443634	3			AC024352	120325755	1	30146	16879	7042	54067
S/G/Y/R/B/O	NT_023811	AC023590	121575332	3	chr8	NT_023811	AP003496	121643147	3	60855	0	0	60855
S/G/Y/R/B/O	NT_023811	AP003496	121643147	3	chr8	NT_023811	AP003494	121732675	3	84372	0	0	84372
S/G/Y/R/B/O	NT_023811	AP003494	121732675	3	chr8	NT_023811	AP003468	121800236	3	26175	0	0	26175
S/G/Y/R/B/O	NT_023811	AP003468	121800236	3	chr8	NT_023811	AP004217	121951576	3	6393	0	0	6393
S/G/Y/R/B/O	NT_023811	AP003468	121800236	3			AC068953	121643147	1	151054	0	0	151054
S/G/Y/R/B/O	NT_023811	AP004217	121951576	3	chr8	NT_023811	AP004283	122087615	3	58672	0	0	58672
S/G/Y/R/B/O	NT_023811	AP004217	121951576	3			AC025293	121951576	1	95967	3347	22312	121626
S/G/Y/R/B/O	NT_023811	AP004217	121951576	3			AC068953	121951576	1	30963	0	0	30963
S/G/Y/R/B/O	NT_023811	AP004283	122087615	3	chr8	NT_023811	AC107953	122186271	3	15968	0	0	15968
S/G/Y/R/B/O	NT_023811	AP004283	122087615	3			AC023487	122087615	1	23620	0	0	23620
S/G/Y/R/B/O	NT_023811	AP004283	122087615	3			AC025293	122087615	1	54944	0	23602	78546
S/G/Y/R/B/O	NT_023811	AC107953	122186271	3	chr8	NT_023811	AC080033	122281351	3	36326	0	0	36326
S/G/Y/R/B/O	NT_023811	AC107953	122186271	3			AC023487	121951576	1	65309	0	0	65309
S/G/Y/R/B/O	NT_023811	AC080033	122281351	3	chr8	NT_023811	AC009514	122422613	3	39705	0	0	39705
S/G/Y/R/B/O	NT_023811	AC080033	122281351	3	chr8	NT_023811	AC087856	122795567	1	38818	0	0	38818
S/G/Y/R/B/O	NT_023811	AC009514	122422613	3	chr8	NT_023811	AC090451	122551887	2	107499	0	0	107499
S/G/Y/R/B/O	NT_023811	AC009514	122422613	3	chr8	NT_023811	AC087856	122795567	1	124237	0	3470	127707
S/G/Y/R/B/O	NT_023811	AC009514	122422613	3			AC092771	122551887	1	50776	0	0	50776
S/G/Y/R/B/O	NT_023811	AC090451	122551887	2	chr8	NT_023811	AC021733	122604922	2	48748	0	0	48748
S/G/Y/R/B/O	NT_023811	AC090451	122551887	2	chr8	NT_023811	AC087856	122795567	1	103791	0	2628	106419
S/G/Y/R/B/O	NT_023811	AC090451	122551887	2			AC092771	122795567	1	103670	0	0	103670
S/G/Y/R/B/O	NT_023811	AC021733	122604922	2	chr8	NT_023811	AC016660	122714380	1	17858	0	0	17858
S/G/Y/R/B/O	NT_023811	AC021733	122604922	2			AC092771	122551887	1	61292	0	0	61292
S/G/Y/R/B/O	NT_023811	AC016660	122714380	1	chr8	NT_023811	AC087856	122795567	1	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC016660	122714380	1	chr8	NT_023811	AC107870	122812254	2	112621	0	0	112621
S/G/Y/R/B/O	NT_023811	AC087856	122795567	1	chr8	NT_023811	AC107870	122812254	2	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC087856	122795567	1	chr8	NT_023811	AC009514	122422613	3	124237	0	3470	127707
S/G/Y/R/B/O	NT_023811	AC087856	122795567	1	chr8	NT_023811	AC080033	122281351	3	38818	0	0	38818
S/G/Y/R/B/O	NT_023811	AC087856	122795567	1	chr8	NT_023811	AC090451	122551887	2	103791	0	2628	106419
S/G/Y/R/B/O	NT_023811	AC087856	122795567	1			AC092771	122551887	1	39920	0	2629	42549
S/G/Y/R/B/O	NT_023811	AC107870	122812254	2	chr8	NT_023811	AC011715	122885771	1	9730	0	0	9730
S/G/Y/R/B/O	NT_023811	AC107870	122812254	2	chr8	NT_023811	AC016660	122714380	1	112621	0	0	112621
S/G/Y/R/B/O	NT_023811	AC011715	122885771	1	chr8	NT_023811	AC021945	122977898	1	49844	0	0	49844
S/G/Y/R/B/O	NT_023811	AC011715	122885771	1	chr8	NT_023811	AC036155	123027940	1	88287	0	0	88287
S/G/Y/R/B/O	NT_023811	AC021945	122977898	1	chr8	NT_023811	AC036155	123027940	1	105811	2285	0	108096
S/G/Y/R/B/O	NT_023811	AC036155	123027940	1	chr8	NT_023811	AC104040	123141332	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC036155	123027940	1	chr8	NT_023811	AC011715	122885771	1	88287	0	0	88287
S/G/Y/R/B/O	NT_023811	AC104040	123141332	3	chr8	NT_023811	AC018377	123277978	3	59782	0	0	59782
S/G/Y/R/B/O	NT_023811	AC104040	123141332	3	chr8	NT_023811	AC104257	117243852	2	66217	0	0	66217
S/G/Y/R/B/O	NT_023811	AC104040	123141332	3			AC010910	114751053	2	59781	0	0	59781
S/G/Y/R/B/O	NT_023811	AC018377	123277978	3	chr8	NT_023811	AC007481	123381838	3	0	0	0	0
S/G/Y/R/B/O	NT_023811	AC018377	123277978	3			AC010910	117243852	2	164437	0	0	164437
S/G/Y/R/B/O	NT_023811	AC018377	123277978	3			AC027761	117243852	3	101019	0	0	101019
S/G/Y/R/B/O	NT_023811	AC007481	123381838	3	chr8	NT_023811	AC060788	123516451	3	0	1991	0	1991
S/G/Y/R/B/O	NT_023811	AC007481	123381838	3			AC015591	123141332	1	91740	0	0	91740
S/G/Y/R/B/O	NT_023811	AC007481	123381838	3			AC027761	123141332	3	74778	0	0	74778
S/G/Y/R/B/O	NT_023811	AC060788	123516451	3	chr8	NT_023811	AC092817	123694168	3	11958	0	0	11958
S/G/Y/R/B/O	NT_023811	AC060788	123516451	3			AC015591	123381838	1	61712	0	0	61712
S/G/Y/R/B/O	NT_023811	AC092817	123694168	3	chr8	NT_023811	AC026596	123704623	2	146294	0	0	146294
S/G/Y/R/B/O	NT_023811	AC026596	123704623	2