Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_007299

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_007299	AL049697	99948489	3	chr6	NT_007299	AL451126	100089696	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL451126	100089696	3	chr6	NT_007299	AL133211	100196296	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL133211	100196296	3	chr6	NT_007299	AL356970	100278682	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL356970	100278682	3	chr6	NT_007299	AL138919	100331666	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL138919	100331666	3	chr6	NT_007299	AL590392	100404101	3	0	1999	0	1999
S/G/Y/R/B/O	NT_007299	AL590392	100404101	3	chr6	NT_007299	AL121942	100506112	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL590392	100404101	3			AP001008	100331666	1	14601	1797	0	16398
S/G/Y/R/B/O	NT_007299	AL121942	100506112	3	chr6	NT_007299	AL138723	100588021	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL121942	100506112	3			AC084233	100331666	1	48628	13180	1297	63105
S/G/Y/R/B/O	NT_007299	AL121942	100506112	3			AP001008	100404101	1	68823	6416	2408	77647
S/G/Y/R/B/O	NT_007299	AL138723	100588021	3	chr6	NT_007299	AL136096	100591603	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL136096	100591603	3	chr6	NT_007299	AL121835	100703715	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL136096	100591603	3			AC084233	100404101	1	43364	15774	3668	62806
S/G/Y/R/B/O	NT_007299	AL136096	100591603	3			AP001008	100703715	1	60182	5808	2339	68329
S/G/Y/R/B/O	NT_007299	AL121835	100703715	3	chr6	NT_007299	AL139042	100820306	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL139042	100820306	3	chr6	NT_007299	AL138719	100927951	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL139042	100820306	3			AC021774	100591603	1	78618	0	0	78618
S/G/Y/R/B/O	NT_007299	AL138719	100927951	3	chr6	NT_007299	AL139090	100928045	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL139090	100928045	3	chr6	NT_007299	AL135779	101056413	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL139090	100928045	3			AC021774	100591603	1	81497	5024	1271	87792
S/G/Y/R/B/O	NT_007299	AL135779	101056413	3	chr6	NT_007299	AL133408	101130493	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL135779	101056413	3			AC021346	100591603	1	42596	0	0	42596
S/G/Y/R/B/O	NT_007299	AL133408	101130493	3	chr6	NT_007299	AL160403	101248965	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL133408	101130493	3			AC021346	100591603	1	117782	0	0	117782
S/G/Y/R/B/O	NT_007299	AL160403	101248965	3	chr6	NT_007299	AL096868	101262995	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL096868	101262995	3	chr6	NT_007299	AL445530	101414656	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL445530	101414656	3	chr6	NT_007299	AL079342	101470120	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL079342	101470120	3	chr6	NT_007299	AL353135	101618661	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL353135	101618661	3	chr6	NT_007299	AL353659	101746214	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL353659	101746214	3	chr6	NT_007299	AL121833	101780064	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL121833	101780064	3	chr6	NT_007299	AL139804	101876487	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL139804	101876487	3	chr6	NT_007299	AL138717	101878401	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL138717	101878401	3	chr6	NT_007299	AL136971	101982610	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL138717	101878401	3			AL132710	101878401	1	85228	2518	2262	90008
S/G/Y/R/B/O	NT_007299	AL136971	101982610	3	chr6	NT_007299	AL159174	102065110	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL136971	101982610	3			AL132710	101876487	1	25413	0	0	25413
S/G/Y/R/B/O	NT_007299	AL159174	102065110	3	chr6	NT_007299	AL096678	102156390	3	0	1950	0	1950
S/G/Y/R/B/O	NT_007299	AL096678	102156390	3	chr6	NT_007299	AL158813	102294519	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL158813	102294519	3	chr6	NT_007299	AL353692	102351503	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL158813	102294519	3			AC015708	102065110	1	39278	6192	1269	46739
S/G/Y/R/B/O	NT_007299	AL353692	102351503	3	chr6	NT_007299	AL121787	102488587	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL353692	102351503	3			AC007747	102351503	1	20523	2301	0	22824
S/G/Y/R/B/O	NT_007299	AL353692	102351503	3			AC015708	102351503	1	59227	7831	20144	87202
S/G/Y/R/B/O	NT_007299	AL121787	102488587	3	chr6	NT_007299	AL158136	102595043	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL121787	102488587	3			AC007747	102294519	1	60155	2597	8543	71295
S/G/Y/R/B/O	NT_007299	AL158136	102595043	3	chr6	NT_007299	AL117342	102623683	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL158136	102595043	3			AC007747	102351503	1	23079	0	5510	28589
S/G/Y/R/B/O	NT_007299	AL117342	102623683	3	chr6	NT_007299	AL121941	102720666	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL117342	102623683	3			AC007747	102351503	1	17535	0	0	17535
S/G/Y/R/B/O	NT_007299	AL121941	102720666	3	chr6	NT_007299	AL159164	102782450	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL121941	102720666	3			AC027156	102351503	1	30960	4695	1172	36827
S/G/Y/R/B/O	NT_007299	AL159164	102782450	3	chr6	NT_007299	AL590641	102844814	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL159164	102782450	3			AC027156	102351503	1	56094	0	0	56094
S/G/Y/R/B/O	NT_007299	AL590641	102844814	3	chr6	NT_007299	AL132996	102845590	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL132996	102845590	3	chr6	NT_007299	AL591052	102944515	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL132996	102845590	3			AC018675	102351503	1	22287	0	0	22287
S/G/Y/R/B/O	NT_007299	AL132996	102845590	3			AC027156	102351503	1	65072	0	2379	67451
S/G/Y/R/B/O	NT_007299	AL591052	102944515	3	chr6	NT_007299	AL391559	102948027	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL391559	102948027	3	chr6	NT_007299	AL121964	103031793	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL391559	102948027	3			AC018675	102845590	1	41505	0	43768	85273
S/G/Y/R/B/O	NT_007299	AL391559	102948027	3			AC025387	102845590	1	26884	0	0	26884
S/G/Y/R/B/O	NT_007299	AL391559	102948027	3			AL161435	102845590	1	42695	0	0	42695
S/G/Y/R/B/O	NT_007299	AL121964	103031793	3	chr6	NT_007299	AL121837	103132687	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL121964	103031793	3			AC018675	102845590	1	25946	1884	18336	46166
S/G/Y/R/B/O	NT_007299	AL121964	103031793	3			AC025387	102845590	1	84938	4401	1138	90477
S/G/Y/R/B/O	NT_007299	AL121964	103031793	3			AL161435	102845590	1	103014	2355	0	105369
S/G/Y/R/B/O	NT_007299	AL121837	103132687	3	chr6	NT_007299	AL135918	103218985	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL121837	103132687	3			AC021949	102845590	1	55921	1734	1237	58892
S/G/Y/R/B/O	NT_007299	AL121837	103132687	3			AC025387	102845590	1	13553	4255	3789	21597
S/G/Y/R/B/O	NT_007299	AL121837	103132687	3			AL161435	102845590	1	35456	4552	0	40008
S/G/Y/R/B/O	NT_007299	AL135918	103218985	3	chr6	NT_007299	AL445208	103329601	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL135918	103218985	3			AC021949	102845590	1	93481	4940	9318	107739
S/G/Y/R/B/O	NT_007299	AL135918	103218985	3			AC074262	102845590	1	83696	0	0	83696
S/G/Y/R/B/O	NT_007299	AL445208	103329601	3	chr6	NT_007299	AL365335	103390243	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL445208	103329601	3			AC027173	102845590	1	56319	2822	0	59141
S/G/Y/R/B/O	NT_007299	AL445208	103329601	3			AC074262	102845590	1	60739	0	0	60739
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3	chr6	NT_007299	AL663112	103551024	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3			AC011685	102845590	1	47651	12875	1431	61957
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3			AC023462	102845590	1	102076	1789	27658	131523
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3			AC027173	102845590	1	88708	8111	1072	97891
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3			AC074262	102845590	1	18440	0	0	18440
S/G/Y/R/B/O	NT_007299	AL365335	103390243	3			AC074382	102845590	1	36231	3879	5053	45163
S/G/Y/R/B/O	NT_007299	AL663112	103551024	3	chr6	NT_007299	AL607079	103579198	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL663112	103551024	3			AC011685	103551024	1	18758	1604	0	20362
S/G/Y/R/B/O	NT_007299	AL663112	103551024	3			AC074382	103551024	1	27638	1638	0	29276
S/G/Y/R/B/O	NT_007299	AL607079	103579198	3	chr6	NT_007299	AL449343	103721767	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL607079	103579198	3			AC011685	103390243	1	34899	0	19116	54015
S/G/Y/R/B/O	NT_007299	AL607079	103579198	3			AC074382	103390243	1	64237	8855	13635	86727
S/G/Y/R/B/O	NT_007299	AL449343	103721767	3	chr6	NT_007299	AL080284	103823254	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL449343	103721767	3			AL513221	103390243	2	91426	0	0	91426
S/G/Y/R/B/O	NT_007299	AL080284	103823254	3	chr6	NT_007299	AL512600	103983904	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL080284	103823254	3			AC027194	103390243	1	152975	0	0	152975
S/G/Y/R/B/O	NT_007299	AL080284	103823254	3			AL513221	103390243	2	39015	0	0	39015
S/G/Y/R/B/O	NT_007299	AL512600	103983904	3	chr6	NT_007299	AL355351	104124976	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL355351	104124976	3	chr6	NT_007299	AL132766	104166923	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL132766	104166923	3	chr6	NT_007299	AL590635	104311807	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL132766	104166923	3			AL358935	104124976	1	94665	0	0	94665
S/G/Y/R/B/O	NT_007299	AL590635	104311807	3	chr6	NT_007299	AL592428	104407721	3	0	1979	0	1979
S/G/Y/R/B/O	NT_007299	AL590635	104311807	3			AC026043	104124976	1	67558	8464	1277	77299
S/G/Y/R/B/O	NT_007299	AL592428	104407721	3	chr6	NT_007299	AL603903	104492351	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL592428	104407721	3			AC026043	104407721	1	62541	3961	9719	76221
S/G/Y/R/B/O	NT_007299	AL603903	104492351	3	chr6	NT_007299	AL590814	104528084	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007299	AL603903	104492351	3			AC025201	104311807	1	17632	0	0	17632
S/G/Y/R/B/O	NT_007299	AL590814	104528084	3	chr6	NT_007299	AL603751	104688624	3	0	1997	0	1997
S/G/Y/R/B/O	NT_007299	AL590814	104528084	3			AC025201	104528084	1	124916	1904	0	126820
S/G/Y/R/B/O	NT_007299	AL603751	104688624	3	chr6	NT_007299	AL596179	104720097	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL596179	104720097	3	chr6	NT_007299	AL133457	104887256	3	0	1993	0	1993
S/G/Y/R/B/O	NT_007299	AL596179	104720097	3			AC016108	104720097	1	147113	0	0	147113
S/G/Y/R/B/O	NT_007299	AL596179	104720097	3			AL591303	104887256	3	31964	0	0	31964
S/G/Y/R/B/O	NT_007299	AL133457	104887256	3	chr6	NT_007299	AL591304	104970727	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL133457	104887256	3			AC009924	104688624	1	32633	0	36524	69157
S/G/Y/R/B/O	NT_007299	AL133457	104887256	3			AC087896	104688624	3	11987	0	0	11987
S/G/Y/R/B/O	NT_007299	AL591304	104970727	3	chr6	NT_007299	AL590869	105005640	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL591304	104970727	3			AC009924	104720097	1	34454	455	0	34909
S/G/Y/R/B/O	NT_007299	AL591304	104970727	3			AC087896	104720097	3	35013	0	0	35013
S/G/Y/R/B/O	NT_007299	AL590869	105005640	3	chr6	NT_007299	AL590230	105005734	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL590230	105005734	3	chr6	NT_007299	AL160265	105074850	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL590230	105005734	3			AC009924	104720097	1	30352	0	39392	69744
S/G/Y/R/B/O	NT_007299	AL590230	105005734	3			AC087896	104720097	3	69215	0	0	69215
S/G/Y/R/B/O	NT_007299	AL160265	105074850	3	chr6	NT_007299	AL359987	105077179	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL359987	105077179	3	chr6	NT_007299	AL589947	105266449	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL359987	105077179	3			AC021418	104720097	1	123082	4366	342	127790
S/G/Y/R/B/O	NT_007299	AL359987	105077179	3			AC087896	104720097	3	65190	0	0	65190
S/G/Y/R/B/O	NT_007299	AL359987	105077179	3			AL450123	104720097	1	77502	0	0	77502
S/G/Y/R/B/O	NT_007299	AL589947	105266449	3	chr6	NT_007299	AL356956	105410064	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL589947	105266449	3			AC021418	105266449	1	13500	0	19856	33356
S/G/Y/R/B/O	NT_007299	AL589947	105266449	3			AL450123	105077179	1	82014	0	0	82014
S/G/Y/R/B/O	NT_007299	AL356956	105410064	3	chr6	NT_007299	AL138731	105604228	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL356956	105410064	3			AL138739	105077179	1	30241	0	0	30241
S/G/Y/R/B/O	NT_007299	AL138731	105604228	3	chr6	NT_007299	AL354857	105676440	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL354857	105676440	3	chr6	NT_007299	AL591036	105875563	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL354857	105676440	3			AC009425	105676440	1	23812	0	0	23812
S/G/Y/R/B/O	NT_007299	AL354857	105676440	3			AC023873	105676440	1	105416	0	4584	110000
S/G/Y/R/B/O	NT_007299	AL354857	105676440	3			AC025054	105676440	1	14668	4436	0	19104
S/G/Y/R/B/O	NT_007299	AL591036	105875563	3	chr6	NT_007299	AL121966	105925816	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL591036	105875563	3			AC009425	105604228	1	52183	0	0	52183
S/G/Y/R/B/O	NT_007299	AL591036	105875563	3			AC023873	105604228	1	32415	0	7017	39432
S/G/Y/R/B/O	NT_007299	AL591036	105875563	3			AC025054	105604228	1	39030	0	1241	40271
S/G/Y/R/B/O	NT_007299	AL121966	105925816	3	chr6	NT_007299	AL591519	106036416	3	0	1995	0	1995
S/G/Y/R/B/O	NT_007299	AL121966	105925816	3			AC009425	105604228	1	68610	0	0	68610
S/G/Y/R/B/O	NT_007299	AL121966	105925816	3			AC025054	105604228	1	84799	0	0	84799
S/G/Y/R/B/O	NT_007299	AL591519	106036416	3	chr6	NT_007299	AL590305	106134027	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL590305	106134027	3	chr6	NT_007299	AL356094	106220386	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL590305	106134027	3			AC024455	106134027	1	68236	7642	3181	79059
S/G/Y/R/B/O	NT_007299	AL356094	106220386	3	chr6	NT_007299	AL391336	106375974	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL356094	106220386	3			AC024455	106036416	1	55240	5756	3857	64853
S/G/Y/R/B/O	NT_007299	AL391336	106375974	3	chr6	NT_007299	AL592217	106494205	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007299	AL592217	106494205	3	chr6	NT_007299	AL356971	106564265	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL356971	106564265	3	chr6	NT_007299	AL157378	106678841	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL356971	106564265	3			AC006265	106375974	3	61046	0	0	61046
S/G/Y/R/B/O	NT_007299	AL157378	106678841	3	chr6	NT_007299	AL139233	106771726	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL157378	106678841	3			AC006265	106494205	3	92699	0	0	92699
S/G/Y/R/B/O	NT_007299	AL139233	106771726	3	chr6	NT_007299	AL078595	106877222	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL139233	106771726	3			AC006265	106494205	3	23677	0	0	23677
S/G/Y/R/B/O	NT_007299	AL139233	106771726	3			AC007110	106494205	3	83718	0	0	83718
S/G/Y/R/B/O	NT_007299	AL078595	106877222	3	chr6	NT_007299	AL135913	107001402	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL078595	106877222	3			AC007110	106494205	3	64201	0	0	64201
S/G/Y/R/B/O	NT_007299	AL135913	107001402	3	chr6	NT_007299	AL121724	107045308	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL121724	107045308	3	chr6	NT_007299	AL513186	107158852	3	0	0	0	0
S/G/Y/R/B/O	NT_007299	AL513186	107158852	3	chr6	NT_007299	AL590670	107231804	3	0	1996	0	1996
S/G/Y/R/B/O	NT_007299	AL590670	107231804	3	chr6	NT_007299	AL365227	107267956	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007299	AL365227	107267956	3	chr6	NT_007299	AL031446	107366433	3	0	0	100	100
S/G/Y/R/B/O	NT_007299	AL365227	107267956	3			AC025601	107158852	1	83699	0	0	83699
S/G/Y/R/B/O	NT_007299	AL031446	107366433	3	chr6	NT_007299	AL135906	107478413	3	0	0	103	103
S/G/Y/R/B/O	NT_007299	AL031446	107366433	3			AC025601	107231804	1	66287	0	0	66287
S/G/Y/R/B/O	NT_007299	AL135906	107478413	3