Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_030710

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_030710	AL645641	135412058	3	chr6	NT_030710	AL591428	135444238	3	0	1998	0	1998
S/G/Y/R/B/O	NT_030710	AL591428	135444238	3	chr6	NT_030710	AL603902	135584250	3	2000	0	0	2000
S/G/Y/R/B/O	NT_030710	AL603902	135584250	3	chr6	NT_030710	AL603911	135740274	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL603902	135584250	3			AC011058	135412058	1	15197	0	0	15197
S/G/Y/R/B/O	NT_030710	AL603911	135740274	3	chr6	NT_030710	AL357352	135774068	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL603911	135740274	3			AC011058	135444238	1	35794	0	0	35794
S/G/Y/R/B/O	NT_030710	AL357352	135774068	3	chr6	NT_030710	AL445259	135878669	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL357352	135774068	3			AC011058	81733861	1	104932	0	0	104932
S/G/Y/R/B/O	NT_030710	AL445259	135878669	3	chr6	NT_030710	AL133257	136013256	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL133257	136013256	3	chr6	NT_030710	AL450351	136143901	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL133257	136013256	3			AC021410	135774068	1	38588	2427	0	41015
S/G/Y/R/B/O	NT_030710	AL450351	136143901	3	chr6	NT_030710	AL354936	136167561	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL450351	136143901	3			AC021410	136143901	1	23506	0	0	23506
S/G/Y/R/B/O	NT_030710	AL354936	136167561	3	chr6	NT_030710	AL450343	136329079	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL354936	136167561	3			AC021410	136167561	1	101750	0	0	101750
S/G/Y/R/B/O	NT_030710	AL354936	136167561	3			AC024506	136167561	1	42687	6670	0	49357
S/G/Y/R/B/O	NT_030710	AL450343	136329079	3	chr6	NT_030710	AL035692	136351184	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL450343	136329079	3			AC024506	136143901	1	20773	1236	0	22009
S/G/Y/R/B/O	NT_030710	AL035692	136351184	3	chr6	NT_030710	AL512376	136435848	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL035692	136351184	3			AC024506	136351184	1	55947	5704	1326	62977
S/G/Y/R/B/O	NT_030710	AL035692	136351184	3			AC040906	136351184	1	15694	1538	0	17232
S/G/Y/R/B/O	NT_030710	AL035692	136351184	3			AL450349	136329079	1	19110	0	0	19110
S/G/Y/R/B/O	NT_030710	AL512376	136435848	3	chr6	NT_030710	AL109842	136483313	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL512376	136435848	3			AC040906	136329079	1	28720	1829	1199	31748
S/G/Y/R/B/O	NT_030710	AL512376	136435848	3			AL450349	136329079	1	47565	0	0	47565
S/G/Y/R/B/O	NT_030710	AL109842	136483313	3	chr6	NT_030710	AL136081	136604211	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL109842	136483313	3			AC040906	136329079	1	101844	7019	1762	110625
S/G/Y/R/B/O	NT_030710	AL109842	136483313	3			AL450349	136329079	1	120966	0	0	120966
S/G/Y/R/B/O	NT_030710	AL136081	136604211	3	chr6	NT_030710	AL451183	136703961	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL136081	136604211	3			AC023179	136329079	1	49821	2490	0	52311
S/G/Y/R/B/O	NT_030710	AL136081	136604211	3			AC073059	136329079	1	62910	6063	10799	79772
S/G/Y/R/B/O	NT_030710	AL451183	136703961	3	chr6	NT_030710	AL121968	136706006	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL121968	136706006	3	chr6	NT_030710	AL136107	136830125	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL121968	136706006	3			AC023179	136329079	1	83242	1901	792	85935
S/G/Y/R/B/O	NT_030710	AL121968	136706006	3			AC073059	136329079	1	46198	7161	15028	68387
S/G/Y/R/B/O	NT_030710	AL136107	136830125	3	chr6	NT_030710	AL451135	136903911	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL136107	136830125	3			AC009426	136329079	3	73748	0	0	73748
S/G/Y/R/B/O	NT_030710	AL136107	136830125	3			AC018860	136329079	1	21995	0	0	21995
S/G/Y/R/B/O	NT_030710	AL451135	136903911	3	chr6	NT_030710	AL356278	136912583	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL356278	136912583	3	chr6	NT_030710	AL356605	137094993	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL356278	136912583	3			AC009426	136329079	3	62127	0	0	62127
S/G/Y/R/B/O	NT_030710	AL356278	136912583	3			AC018860	136329079	1	138772	0	0	138772
S/G/Y/R/B/O	NT_030710	AL356278	136912583	3			AC022269	136329079	1	115026	0	0	115026
S/G/Y/R/B/O	NT_030710	AL356605	137094993	3	chr6	NT_030710	AL136224	137264386	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL356605	137094993	3			AC022269	137094993	1	39445	0	18779	58224
S/G/Y/R/B/O	NT_030710	AL136224	137264386	3	chr6	NT_030710	AL355296	137332926	3	2000	0	0	2000
S/G/Y/R/B/O	NT_030710	AL136224	137264386	3			AL157376	136912583	1	22095	0	20091	42186
S/G/Y/R/B/O	NT_030710	AL355296	137332926	3	chr6	NT_030710	AL136128	137490036	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL355296	137332926	3			AL157376	137264386	1	55663	0	0	55663
S/G/Y/R/B/O	NT_030710	AL136128	137490036	3	chr6	NT_030710	AL121938	137641811	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL136128	137490036	3			AC068681	137264386	1	130917	10187	3304	144408
S/G/Y/R/B/O	NT_030710	AL121938	137641811	3	chr6	NT_030710	AL359676	137797765	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL121938	137641811	3			AC068681	137332926	1	41347	0	0	41347
S/G/Y/R/B/O	NT_030710	AL359676	137797765	3	chr6	NT_030710	AL450332	137838265	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL450332	137838265	3	chr6	NT_030710	AL365259	138012843	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL365259	138012843	3	chr6	NT_030710	AL389919	138119350	3	0	1860	0	1860
S/G/Y/R/B/O	NT_030710	AL389919	138119350	3	chr6	NT_030710	AL078594	138146504	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL078594	138146504	3	chr6	NT_030710	AL136163	138311212	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL136163	138311212	3	chr6	NT_030710	AL035689	138390551	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL035689	138390551	3	chr6	NT_030710	AL391115	138534815	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL391115	138534815	3	chr6	NT_030710	AL162580	138559630	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL162580	138559630	3	chr6	NT_030710	AC020559	138731013	3	93849	0	0	93849
S/G/Y/R/B/O	NT_030710	AC020559	138731013	3	chr6	NT_030710	AL356534	138831243	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AC020559	138731013	3			AL357393	138559630	1	85824	5486	5259	96569
S/G/Y/R/B/O	NT_030710	AL356534	138831243	3	chr6	NT_030710	AL450347	139000057	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL356534	138831243	3			AL357393	138559630	1	63459	0	2837	66296
S/G/Y/R/B/O	NT_030710	AL356534	138831243	3			AL590291	139000057	1	140757	0	0	140757
S/G/Y/R/B/O	NT_030710	AL450347	139000057	3	chr6	NT_030710	AL359535	139077350	3	0	1998	0	1998
S/G/Y/R/B/O	NT_030710	AL359535	139077350	3	chr6	NT_030710	AL137183	139115989	3	0	1999	0	1999
S/G/Y/R/B/O	NT_030710	AL137183	139115989	3	chr6	NT_030710	AL035603	139144156	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL035603	139144156	3	chr6	NT_030710	AL390055	139282498	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL390055	139282498	3	chr6	NT_030710	AL354858	139329721	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL354858	139329721	3	chr6	NT_030710	AL590791	139484979	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL590791	139484979	3	chr6	NT_030710	AL031776	139487544	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL031776	139487544	3	chr6	NT_030710	AL590733	139595652	3	2000	0	0	2000
S/G/Y/R/B/O	NT_030710	AL031776	139487544	3			AC090201	139282498	1	47708	0	0	47708
S/G/Y/R/B/O	NT_030710	AL590733	139595652	3	chr6	NT_030710	AL109939	139729159	3	2000	0	0	2000
S/G/Y/R/B/O	NT_030710	AL590733	139595652	3			AL590792	139729159	3	51892	0	0	51892
S/G/Y/R/B/O	NT_030710	AL109939	139729159	3	chr6	NT_030710	AL590002	139842742	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL109939	139729159	3			AP002450	139595652	1	49724	4514	4651	58889
S/G/Y/R/B/O	NT_030710	AL590002	139842742	3	chr6	NT_030710	AL096711	139897507	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL590002	139842742	3			AP002450	139897507	1	39142	0	0	39142
S/G/Y/R/B/O	NT_030710	AL096711	139897507	3	chr6	NT_030710	AL583806	139981116	3	0	0	100	100
S/G/Y/R/B/O	NT_030710	AL096711	139897507	3			AP002450	139842742	1	30518	4015	0	34533
S/G/Y/R/B/O	NT_030710	AL583806	139981116	3	chr6	NT_030710	AL592291	140095116	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL583806	139981116	3			AC016986	139842742	1	68848	0	0	68848
S/G/Y/R/B/O	NT_030710	AL592291	140095116	3	chr6	NT_030710	AL356432	140118203	3	2000	0	0	2000
S/G/Y/R/B/O	NT_030710	AL592291	140095116	3			AC016986	139897507	1	24576	0	0	24576
S/G/Y/R/B/O	NT_030710	AL356432	140118203	3	chr6	NT_030710	AL365224	140286339	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL356432	140118203	3	chr6	NT_030710	AC016532	140432875	1	76039	4490	5026	85555
S/G/Y/R/B/O	NT_030710	AL356432	140118203	3			AC016986	140432875	1	28006	0	46181	74187
S/G/Y/R/B/O	NT_030710	AL356432	140118203	3			AL354894	140432875	1	44834	0	0	44834
S/G/Y/R/B/O	NT_030710	AL365224	140286339	3	chr6	NT_030710	AL035470	140352755	3	0	0	0	0
S/G/Y/R/B/O	NT_030710	AL365224	140286339	3	chr6	NT_030710	AC016532	140432875	1	55357	2711	3063	61131
S/G/Y/R/B/O	NT_030710	AL365224	140286339	3			AL354894	140432875	1	65324	0	0	65324
S/G/Y/R/B/O	NT_030710	AL035470	140352755	3	chr6	NT_030710	AC016532	140432875	1	6158	908	0	7066
S/G/Y/R/B/O	NT_030710	AL035470	140352755	3			AL354894	140432875	1	12842	0	0	12842
S/G/Y/R/B/O	NT_030710	AC016532	140432875	1
S/G/Y/R/B/O	NT_030710	AC016532	140432875	1	chr6	NT_030710	AL356432	140118203	3	76039	4490	5026	85555
S/G/Y/R/B/O	NT_030710	AC016532	140432875	1	chr6	NT_030710	AL365224	140286339	3	55357	2711	3063	61131
S/G/Y/R/B/O	NT_030710	AC016532	140432875	1			AL354894	140352755	1	97129	7199	3063	107391