Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_019424

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_019424	AC068236	107567657	1	chr6	NT_019424	AC015760	107621321	1	63723	21073	10117	94913
S/G/Y/R/B/O	NT_019424	AC015760	107621321	1	chr6	NT_019424	AC080175	107734982	2	18395	0	8446	26841
S/G/Y/R/B/O	NT_019424	AC080175	107734982	2	chr6	NT_019424	AC021595	107880969	1	108263	0	0	108263
S/G/Y/R/B/O	NT_019424	AC021595	107880969	1	chr6	NT_019424	AL671884	107892346	3	21446	0	0	21446
S/G/Y/R/B/O	NT_019424	AL671884	107892346	3	chr6	NT_019424	AL607077	107997618	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	AL607077	107997618	3	chr6	NT_019424	AL390789	108171084	3	22097	0	0	22097
S/G/Y/R/B/O	NT_019424	AL390789	108171084	3	chr6	NT_019424	AL034348	108296421	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL390789	108171084	3			AL356303	107892346	1	58817	0	0	58817
S/G/Y/R/B/O	NT_019424	AL034348	108296421	3	chr6	NT_019424	AL139108	108416835	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL034348	108296421	3			AL356303	107997618	1	120202	0	0	120202
S/G/Y/R/B/O	NT_019424	AL139108	108416835	3	chr6	NT_019424	AL512447	108447279	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL512447	108447279	3	chr6	NT_019424	AL512406	108549265	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL512406	108549265	3	chr6	NT_019424	AL499626	108629412	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL499626	108629412	3	chr6	NT_019424	AL021367	108672969	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL021367	108672969	3	chr6	NT_019424	AL590404	108812219	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590404	108812219	3	chr6	NT_019424	AL132776	108919157	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL132776	108919157	3	chr6	NT_019424	AL355143	109011874	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL355143	109011874	3	chr6	NT_019424	AL033379	109074354	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL033379	109074354	3	chr6	NT_019424	AL159985	109182015	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL033379	109074354	3			AL162577	52156053	1	35195	0	0	35195
S/G/Y/R/B/O	NT_019424	AL159985	109182015	3	chr6	NT_019424	AL033375	109296435	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL159985	109182015	3			AL162577	52156053	1	113961	626	0	114587
S/G/Y/R/B/O	NT_019424	AL033375	109296435	3	chr6	NT_019424	AL356958	109447124	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL033375	109296435	3			AL162577	52156053	1	15791	0	0	15791
S/G/Y/R/B/O	NT_019424	AL356958	109447124	3	chr6	NT_019424	AL023656	109473878	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL356958	109447124	3			AL078589	109296435	3	19544	0	0	19544
S/G/Y/R/B/O	NT_019424	AL023656	109473878	3	chr6	NT_019424	AL590484	109586139	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590484	109586139	3	chr6	NT_019424	AL353679	109651279	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL353679	109651279	3	chr6	NT_019424	Z84719	109751290	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL353679	109651279	3			AC021806	109296435	1	25065	2479	15694	43238
S/G/Y/R/B/O	NT_019424	Z84719	109751290	3	chr6	NT_019424	AL358873	109875200	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	Z84719	109751290	3			AC021806	109296435	1	64514	4482	50560	119556
S/G/Y/R/B/O	NT_019424	AL358873	109875200	3	chr6	NT_019424	AL596208	109966229	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019424	AL358873	109875200	3			AL590862	109875200	1	68835	0	0	68835
S/G/Y/R/B/O	NT_019424	AL596208	109966229	3	chr6	NT_019424	AL080316	110079025	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL596208	109966229	3			AL590862	109875200	1	92923	0	0	92923
S/G/Y/R/B/O	NT_019424	AL080316	110079025	3	chr6	NT_019424	AL357124	110182162	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL357124	110182162	3	chr6	NT_019424	AL590239	110302101	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL357124	110182162	3			AL590865	109966229	1	21081	0	0	21081
S/G/Y/R/B/O	NT_019424	AL590239	110302101	3	chr6	NT_019424	AL591102	110429317	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019424	AL590239	110302101	3			AL590865	109966229	1	117053	0	9178	126231
S/G/Y/R/B/O	NT_019424	AL591102	110429317	3	chr6	NT_019424	AL590727	110473017	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL591102	110429317	3			AL590865	110302101	1	44590	0	0	44590
S/G/Y/R/B/O	NT_019424	AL590727	110473017	3	chr6	NT_019424	AL589740	110598931	2	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590727	110473017	3			AC018703	110302101	1	16717	0	1099	17816
S/G/Y/R/B/O	NT_019424	AL590727	110473017	3			AC023995	110302101	1	115671	7500	2769	125940
S/G/Y/R/B/O	NT_019424	AL589740	110598931	2	chr6	NT_019424	AL607071	110786694	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL589740	110598931	2			AC018703	110302101	1	120869	8561	16503	145933
S/G/Y/R/B/O	NT_019424	AL589740	110598931	2			AC023995	110302101	1	19847	5498	2692	28037
S/G/Y/R/B/O	NT_019424	AL589740	110598931	2			AC025485	110302101	1	23693	0	0	23693
S/G/Y/R/B/O	NT_019424	AL589740	110598931	2			AC031982	110302101	1	134233	3629	15469	153331
S/G/Y/R/B/O	NT_019424	AL607071	110786694	3	chr6	NT_019424	Z84482	110856700	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019424	AL607071	110786694	3			AC025485	110302101	1	66063	0	5036	71099
S/G/Y/R/B/O	NT_019424	Z84482	110856700	3	chr6	NT_019424	AL590395	110940290	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	Z84482	110856700	3			AC022813	110856700	1	57764	2937	0	60701
S/G/Y/R/B/O	NT_019424	Z84482	110856700	3			AC025485	110856700	1	39087	1828	0	40915
S/G/Y/R/B/O	NT_019424	AL590395	110940290	3	chr6	NT_019424	AL589826	111094937	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL590395	110940290	3			AC022813	110786694	1	96506	0	0	96506
S/G/Y/R/B/O	NT_019424	AL589826	111094937	3	chr6	NT_019424	AL022395	111212934	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL022395	111212934	3	chr6	NT_019424	AL078603	111339716	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL078603	111339716	3	chr6	NT_019424	AL590022	111489971	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL078603	111339716	3			AC011935	111094937	1	114243	2715	0	116958
S/G/Y/R/B/O	NT_019424	AL590022	111489971	3	chr6	NT_019424	AL591803	111538770	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	AL590022	111489971	3			AC011935	111212934	1	42692	1539	3208	47439
S/G/Y/R/B/O	NT_019424	AL591803	111538770	3	chr6	NT_019424	AL034371	111627095	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL034371	111627095	3	chr6	NT_019424	AL513550	111736348	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL513550	111736348	3	chr6	NT_019424	AL137784	111864153	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL137784	111864153	3	chr6	NT_019424	AL035087	111991466	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL137784	111864153	3			AC025216	111538770	1	50090	3620	1445	55155
S/G/Y/R/B/O	NT_019424	AL137784	111864153	3			AL357622	111538770	1	52004	0	0	52004
S/G/Y/R/B/O	NT_019424	AL035087	111991466	3	chr6	NT_019424	AL390959	112111316	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL035087	111991466	3			AC025216	111538770	1	73588	3593	0	77181
S/G/Y/R/B/O	NT_019424	AL035087	111991466	3			AL357622	111538770	1	89708	0	0	89708
S/G/Y/R/B/O	NT_019424	AL390959	112111316	3	chr6	NT_019424	AL590725	112216455	3	2807	0	0	2807
S/G/Y/R/B/O	NT_019424	AL590725	112216455	3	chr6	NT_019424	AL603909	112394342	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019424	AL590725	112216455	3			AC027643	112216455	1	138076	4882	6880	149838
S/G/Y/R/B/O	NT_019424	AL603909	112394342	3	chr6	NT_019424	AL590732	112395843	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019424	AL590732	112395843	3	chr6	NT_019424	AL080285	112464935	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL080285	112464935	3	chr6	NT_019424	AL583822	112635638	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL080285	112464935	3			AL590309	112635638	1	12689	7503	0	20192
S/G/Y/R/B/O	NT_019424	AL583822	112635638	3	chr6	NT_019424	AL121948	112762152	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL583822	112635638	3			AC027499	112395843	1	78260	0	0	78260
S/G/Y/R/B/O	NT_019424	AL583822	112635638	3			AL590309	112464935	1	69469	10102	6923	86494
S/G/Y/R/B/O	NT_019424	AL121948	112762152	3	chr6	NT_019424	Z86062	112782079	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL121948	112762152	3			AC027499	112464935	1	19913	0	0	19913
S/G/Y/R/B/O	NT_019424	Z86062	112782079	3	chr6	NT_019424	AL513207	112958911	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	Z86062	112782079	3			AC026619	112464935	1	68271	0	1277	69548
S/G/Y/R/B/O	NT_019424	Z86062	112782079	3			AC027499	112464935	1	58742	3186	1039	62967
S/G/Y/R/B/O	NT_019424	AL513207	112958911	3	chr6	NT_019424	AL121965	112970293	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL121965	112970293	3	chr6	NT_019424	AL591585	113083215	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL121965	112970293	3			AC026619	112970293	1	76056	0	2986	79042
S/G/Y/R/B/O	NT_019424	AL591585	113083215	3	chr6	NT_019424	AL356122	113123108	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019424	AL356122	113123108	3	chr6	NT_019424	AL133338	113193963	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL133338	113193963	3	chr6	NT_019424	AL161720	113314177	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL133338	113193963	3			AL356434	113123108	1	11671	4889	2044	18604
S/G/Y/R/B/O	NT_019424	AL161720	113314177	3	chr6	NT_019424	AL109934	113340527	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL161720	113314177	3			AL356434	113193963	1	18546	0	156	18702
S/G/Y/R/B/O	NT_019424	AL109934	113340527	3	chr6	NT_019424	AL450427	113435772	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL109934	113340527	3			AL356434	113193963	1	29613	7170	20884	57667
S/G/Y/R/B/O	NT_019424	AL450427	113435772	3	chr6	NT_019424	AL160404	113504515	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL160404	113504515	3	chr6	NT_019424	AL365276	113531918	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL365276	113531918	3	chr6	NT_019424	AP002528	113690555	3	79731	0	0	79731
S/G/Y/R/B/O	NT_019424	AL365276	113531918	3			AB042234	113435772	3	79731	0	0	79731
S/G/Y/R/B/O	NT_019424	AL365276	113531918	3			AC023579	113435772	1	59535	2225	17386	79146
S/G/Y/R/B/O	NT_019424	AL365276	113531918	3			AL139107	113435772	1	117114	0	0	117114
S/G/Y/R/B/O	NT_019424	AL365276	113531918	3			AL356861	113504515	1	38246	0	0	38246
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3	chr6	NT_019424	AP002529	113910713	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AB041511	113690555	3	157886	0	0	157886
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AB041731	113690555	3	93227	0	0	93227
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AB042234	113690555	3	143309	0	0	143309
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AC013311	113690555	1	148609	2658	0	151267
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AC023579	113690555	1	105262	14567	35166	154995
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AL139107	113690555	1	81617	0	0	81617
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AL356861	113690555	1	182047	0	0	182047
S/G/Y/R/B/O	NT_019424	AP002528	113690555	3			AL357058	113690555	3	54631	0	0	54631
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3	chr6	NT_019424	AP002530	114210713	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3			AB041731	113531918	3	63013	0	0	63013
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3			AB041992	113531918	3	99705	0	0	99705
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3			AB042031	113531918	3	194710	0	0	194710
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3			AL109919	113531918	3	95950	0	0	95950
S/G/Y/R/B/O	NT_019424	AP002529	113910713	3			AL139104	113531918	1	86248	0	19897	106145
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3	chr6	NT_019424	AP002531	114510713	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3			AB041340	113531918	3	126989	0	0	126989
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3			AB041512	113531918	3	82873	0	0	82873
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3			AB042030	113531918	3	111926	0	0	111926
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3			AL355532	113531918	3	177538	0	0	177538
S/G/Y/R/B/O	NT_019424	AP002530	114210713	3			AL359174	113531918	3	122051	0	0	122051
S/G/Y/R/B/O	NT_019424	AP002531	114510713	3	chr6	NT_019424	AL592298	114667691	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002531	114510713	3			AB042235	113531918	3	77918	0	0	77918
S/G/Y/R/B/O	NT_019424	AP002531	114510713	3			AB042236	113531918	3	96013	0	0	96013
S/G/Y/R/B/O	NT_019424	AP002531	114510713	3			AL133403	113531918	1	94904	2702	10461	108067
S/G/Y/R/B/O	NT_019424	AL592298	114667691	3	chr6	NT_019424	AL357139	114714291	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL592298	114667691	3			AL358936	114714291	1	11631	2971	0	14602
S/G/Y/R/B/O	NT_019424	AL357139	114714291	3	chr6	NT_019424	AL357506	114840713	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL357506	114840713	3
S/G/Y/R/B/O	NT_019424	AL357506	114840713	3			AF191071	114667691	3	88453	0	0	88453