Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_007563

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_007563	AC069586	115094611	1	chr6	NT_007563	AL513011	115101922	3	119126	7224	5163	131513
S/G/Y/R/B/O	NT_007563	AL513011	115101922	3	chr6	NT_007563	AL591844	115259126	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL591844	115259126	3	chr6	NT_007563	AL136975	115289487	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL136975	115289487	3	chr6	NT_007563	Z98755	115339516	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	Z98755	115339516	3	chr6	NT_007563	AL009029	115489114	3	12112	0	0	12112
S/G/Y/R/B/O	NT_007563	AL009029	115489114	3	chr6	NT_007563	AL121937	115638447	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL009029	115489114	3			AL121940	115289487	1	96433	0	0	96433
S/G/Y/R/B/O	NT_007563	AL121937	115638447	3	chr6	NT_007563	Z99290	115681103	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	AL121937	115638447	3			AL121940	115339516	1	31990	0	0	31990
S/G/Y/R/B/O	NT_007563	Z99290	115681103	3	chr6	NT_007563	AL049554	115758186	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	AL049554	115758186	3	chr6	NT_007563	AL590788	115858580	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL590788	115858580	3	chr6	NT_007563	AL591387	115968522	3	0	1999	0	1999
S/G/Y/R/B/O	NT_007563	AL591387	115968522	3	chr6	NT_007563	AL590553	115999269	3	0	1996	0	1996
S/G/Y/R/B/O	NT_007563	AL590553	115999269	3	chr6	NT_007563	AL596176	116169154	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL596176	116169154	3	chr6	NT_007563	AL590608	116191748	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL590608	116191748	3	chr6	NT_007563	AL021330	116390085	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL021330	116390085	3	chr6	NT_007563	AL583840	116472706	3	0	1997	0	1997
S/G/Y/R/B/O	NT_007563	AL021330	116390085	3			AC009907	116169154	1	26429	6838	7682	40949
S/G/Y/R/B/O	NT_007563	AL583840	116472706	3	chr6	NT_007563	AL024505	116553571	3	0	0	1993	1993
S/G/Y/R/B/O	NT_007563	AL583840	116472706	3			AC009907	116191748	1	55108	2705	9061	66874
S/G/Y/R/B/O	NT_007563	AL024505	116553571	3	chr6	NT_007563	AL513215	116695668	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL024505	116553571	3			AC009907	116553571	1	31668	5239	0	36907
S/G/Y/R/B/O	NT_007563	AL024505	116553571	3			AC019308	116553571	1	54558	0	0	54558
S/G/Y/R/B/O	NT_007563	AL513215	116695668	3	chr6	NT_007563	AL359646	116738888	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL513215	116695668	3			AC019308	116472706	1	43248	0	0	43248
S/G/Y/R/B/O	NT_007563	AL513215	116695668	3			AC027012	116472706	1	25543	7463	0	33006
S/G/Y/R/B/O	NT_007563	AL359646	116738888	3	chr6	NT_007563	AL357522	116821872	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL359646	116738888	3			AC019308	116472706	1	50691	0	0	50691
S/G/Y/R/B/O	NT_007563	AL359646	116738888	3			AC022038	116472706	1	70307	0	0	70307
S/G/Y/R/B/O	NT_007563	AL359646	116738888	3			AC027012	116472706	1	62343	0	8682	71025
S/G/Y/R/B/O	NT_007563	AL357522	116821872	3	chr6	NT_007563	AL356967	116944378	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL357522	116821872	3			AC022038	116472706	1	72101	2223	24785	99109
S/G/Y/R/B/O	NT_007563	AL357522	116821872	3			AC027012	116472706	1	44346	0	0	44346
S/G/Y/R/B/O	NT_007563	AL356967	116944378	3	chr6	NT_007563	AL590402	117108151	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL356967	116944378	3			AC020592	116472706	1	50390	0	1038	51428
S/G/Y/R/B/O	NT_007563	AL590402	117108151	3	chr6	NT_007563	AL513472	117151277	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL590402	117108151	3			AC020592	117108151	1	42466	0	0	42466
S/G/Y/R/B/O	NT_007563	AL513472	117151277	3	chr6	NT_007563	AL357315	117219605	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL513472	117151277	3			AC020592	116944378	1	65470	1594	1310	68374
S/G/Y/R/B/O	NT_007563	AL357315	117219605	3	chr6	NT_007563	AL135911	117340634	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL135911	117340634	3	chr6	NT_007563	Z95329	117449441	3	33253	0	0	33253
S/G/Y/R/B/O	NT_007563	AL135911	117340634	3			AC025348	116944378	1	77462	4824	15631	97917
S/G/Y/R/B/O	NT_007563	Z95329	117449441	3	chr6	NT_007563	AL356775	117519023	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	Z95329	117449441	3			AC025348	117449441	1	67341	12135	1290	80766
S/G/Y/R/B/O	NT_007563	AL356775	117519023	3	chr6	NT_007563	AL359709	117562748	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	AL356775	117519023	3			AC024292	117340634	1	14567	0	0	14567
S/G/Y/R/B/O	NT_007563	AL359709	117562748	3	chr6	NT_007563	AL133406	117621615	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL359709	117562748	3			AC024292	117562748	1	36668	6592	3144	46404
S/G/Y/R/B/O	NT_007563	AL133406	117621615	3	chr6	NT_007563	AL590871	117724936	3	0	1999	0	1999
S/G/Y/R/B/O	NT_007563	AL133406	117621615	3			AC024292	117519023	1	59329	0	1416	60745
S/G/Y/R/B/O	NT_007563	AL590871	117724936	3	chr6	NT_007563	AL139191	117759026	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007563	AL139191	117759026	3	chr6	NT_007563	AL096794	117884999	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	AL139191	117759026	3			AC005543	117759026	3	39235	0	0	39235
S/G/Y/R/B/O	NT_007563	AL096794	117884999	3	chr6	NT_007563	Z97206	117965768	3	0	0	100	100
S/G/Y/R/B/O	NT_007563	AL096794	117884999	3			AC005543	117724936	3	40662	0	0	40662
S/G/Y/R/B/O	NT_007563	Z97206	117965768	3	chr6	NT_007563	AL450340	118101967	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL450340	118101967	3	chr6	NT_007563	AL591518	118165673	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL450340	118101967	3	chr6	NT_007563	AC034142	118354702	1	56767	0	5212	61979
S/G/Y/R/B/O	NT_007563	AL591518	118165673	3	chr6	NT_007563	AL596112	118282694	3	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL591518	118165673	3	chr6	NT_007563	AC034142	118354702	1	52517	4196	37409	94122
S/G/Y/R/B/O	NT_007563	AL591518	118165673	3			AL672292	118354702	2	83700	0	0	83700
S/G/Y/R/B/O	NT_007563	AL591518	118165673	3			AL683826	118354702	1	38977	0	43658	82635
S/G/Y/R/B/O	NT_007563	AL596112	118282694	3	chr6	NT_007563	AC034142	118354702	1	0	0	0	0
S/G/Y/R/B/O	NT_007563	AL596112	118282694	3			AL672292	118354702	2	73721	0	0	73721
S/G/Y/R/B/O	NT_007563	AL596112	118282694	3			AL683826	118354702	1	73721	0	0	73721
S/G/Y/R/B/O	NT_007563	AC034142	118354702	1
S/G/Y/R/B/O	NT_007563	AC034142	118354702	1	chr6	NT_007563	AL450340	118101967	3	56767	0	5212	61979
S/G/Y/R/B/O	NT_007563	AC034142	118354702	1	chr6	NT_007563	AL591518	118165673	3	52517	4196	37409	94122
S/G/Y/R/B/O	NT_007563	AC034142	118354702	1			AL672292	118165673	2	57802	4181	12072	74055
S/G/Y/R/B/O	NT_007563	AC034142	118354702	1			AL683826	118165673	1	37030	4190	23058	64278