Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_007540

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_007540	AC067915	72967100	1	chr6	NT_007540	AL049551	72974727	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AC067915	72967100	1	chr6	NT_007540	AL121949	74821865	3	100203	10165	2796	113164
S/G/Y/R/B/O	NT_007540	AC067915	72967100	1	chr6	NT_007540	AL590456	74782027	3	38948	0	0	38948
S/G/Y/R/B/O	NT_007540	AC067915	72967100	1			AC073286	70838992	1	12839	13753	37125	63717
S/G/Y/R/B/O	NT_007540	AL049551	72974727	3	chr6	NT_007540	AL356135	73039964	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL356135	73039964	3	chr6	NT_007540	AL049544	73108691	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL049544	73108691	3	chr6	NT_007540	AL391644	73212201	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL391644	73212201	3	chr6	NT_007540	AL133459	73277714	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL391644	73212201	3			AC068460	73212201	1	34020	0	1039	35059
S/G/Y/R/B/O	NT_007540	AL133459	73277714	3	chr6	NT_007540	AL355347	73377280	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL133459	73277714	3			AC068460	73108691	1	25969	0	71374	97343
S/G/Y/R/B/O	NT_007540	AL355347	73377280	3	chr6	NT_007540	AL590202	73463478	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL355347	73377280	3			AC067786	73108691	1	20200	3443	2692	26335
S/G/Y/R/B/O	NT_007540	AL355347	73377280	3			AC068460	73108691	1	46223	0	0	46223
S/G/Y/R/B/O	NT_007540	AL590202	73463478	3	chr6	NT_007540	AL360220	73466969	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL360220	73466969	3	chr6	NT_007540	AL161440	73574913	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL360220	73466969	3			AC067786	73108691	1	103193	1665	0	104858
S/G/Y/R/B/O	NT_007540	AL161440	73574913	3	chr6	NT_007540	AL138882	73656593	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL161440	73574913	3			AC007446	73574913	3	77557	0	0	77557
S/G/Y/R/B/O	NT_007540	AL161440	73574913	3			AC067786	73574913	1	10135	656	412	11203
S/G/Y/R/B/O	NT_007540	AL161440	73574913	3			AC068304	73574913	3	45345	0	0	45345
S/G/Y/R/B/O	NT_007540	AL138882	73656593	3	chr6	NT_007540	Z93021	73732005	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL138882	73656593	3			AC007446	73466969	3	75392	0	0	75392
S/G/Y/R/B/O	NT_007540	AL138882	73656593	3			AC068304	73466969	3	75392	0	0	75392
S/G/Y/R/B/O	NT_007540	Z93021	73732005	3	chr6	NT_007540	AL589682	73848590	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	Z93021	73732005	3			AC007446	73466969	3	24528	0	0	24528
S/G/Y/R/B/O	NT_007540	Z93021	73732005	3			AC024992	73466969	1	38935	0	0	38935
S/G/Y/R/B/O	NT_007540	Z93021	73732005	3			AC068304	73466969	3	34692	0	0	34692
S/G/Y/R/B/O	NT_007540	AL589682	73848590	3	chr6	NT_007540	AL451108	73902100	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL589682	73848590	3			AC024992	73848590	1	49104	0	0	49104
S/G/Y/R/B/O	NT_007540	AL451108	73902100	3	chr6	NT_007540	AL355375	73945839	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL451108	73902100	3			AC024992	73732005	1	42578	0	239	42817
S/G/Y/R/B/O	NT_007540	AL355375	73945839	3	chr6	NT_007540	AL589736	74149240	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL355375	73945839	3			AC024992	73732005	1	33287	0	0	33287
S/G/Y/R/B/O	NT_007540	AL589736	74149240	3	chr6	NT_007540	AL121931	74202631	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL121931	74202631	3	chr6	NT_007540	AL590645	74336282	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL121931	74202631	3			AL356427	73732005	1	27179	8407	24921	60507
S/G/Y/R/B/O	NT_007540	AL590645	74336282	3	chr6	NT_007540	AL590558	74405931	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL590645	74336282	3			AL356427	73732005	1	28117	2508	18514	49139
S/G/Y/R/B/O	NT_007540	AL590558	74405931	3	chr6	NT_007540	AL359675	74504759	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL359675	74504759	3	chr6	NT_007540	AL450346	74613660	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL359675	74504759	3			AC021386	74336282	1	42049	0	0	42049
S/G/Y/R/B/O	NT_007540	AL450346	74613660	3	chr6	NT_007540	AL590456	74782027	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL450346	74613660	3			AC021386	74405931	1	128267	1103	1439	130809
S/G/Y/R/B/O	NT_007540	AL450346	74613660	3			AC027196	74405931	1	105929	18848	7426	132203
S/G/Y/R/B/O	NT_007540	AL590456	74782027	3	chr6	NT_007540	AL121949	74821865	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL590456	74782027	3	chr6	NT_007540	AC067915	72967100	1	38948	0	0	38948
S/G/Y/R/B/O	NT_007540	AL121949	74821865	3	chr6	NT_007540	AL390854	74962052	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL121949	74821865	3	chr6	NT_007540	AC067915	72967100	1	100203	10165	2796	113164
S/G/Y/R/B/O	NT_007540	AL121949	74821865	3			AC022656	72967100	1	12175	639	14303	27117
S/G/Y/R/B/O	NT_007540	AL121949	74821865	3			AC073286	72967100	1	10394	12956	40925	64275
S/G/Y/R/B/O	NT_007540	AL390854	74962052	3	chr6	NT_007540	AL135905	74988411	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL390854	74962052	3			AC022656	72967100	1	21628	1968	935	24531
S/G/Y/R/B/O	NT_007540	AL135905	74988411	3	chr6	NT_007540	AL513043	75106750	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL135905	74988411	3			AC022656	72967100	1	62212	4411	19852	86475
S/G/Y/R/B/O	NT_007540	AL135905	74988411	3			AC023349	72967100	1	14048	10021	29870	53939
S/G/Y/R/B/O	NT_007540	AL513043	75106750	3	chr6	NT_007540	AL445676	75147731	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL445676	75147731	3	chr6	NT_007540	AL050329	75161139	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL445676	75147731	3			AL354719	72967100	1	13508	0	0	13508
S/G/Y/R/B/O	NT_007540	AL050329	75161139	3	chr6	NT_007540	AL445677	75247693	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL050329	75161139	3			AL354719	72967100	1	86642	0	0	86642
S/G/Y/R/B/O	NT_007540	AL445677	75247693	3	chr6	NT_007540	AL354913	75332325	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL445677	75247693	3			AL354719	72967100	1	84732	0	0	84732
S/G/Y/R/B/O	NT_007540	AL354913	75332325	3	chr6	NT_007540	AL590546	75438458	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL354913	75332325	3			AC022949	75332325	1	72687	0	0	72687
S/G/Y/R/B/O	NT_007540	AL590546	75438458	3	chr6	NT_007540	AL590784	75509420	2	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL590546	75438458	3			AC022949	75247693	1	70118	0	0	70118
S/G/Y/R/B/O	NT_007540	AL590784	75509420	2	chr6	NT_007540	AL603767	75666639	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007540	AL590784	75509420	2			AL603762	75438458	2	109344	0	0	109344
S/G/Y/R/B/O	NT_007540	AL603767	75666639	3	chr6	NT_007540	AL078597	75760516	3	0	1987	0	1987
S/G/Y/R/B/O	NT_007540	AL603767	75666639	3			AL603762	75509420	2	38889	0	0	38889
S/G/Y/R/B/O	NT_007540	AL078597	75760516	3	chr6	NT_007540	AL357375	75896725	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL357375	75896725	3	chr6	NT_007540	AL356454	75946957	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL356454	75946957	3	chr6	NT_007540	AL355357	76121190	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL356454	75946957	3			AL160003	75666639	1	122676	7040	3900	133616
S/G/Y/R/B/O	NT_007540	AL355357	76121190	3	chr6	NT_007540	AL450324	76237351	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL450324	76237351	3	chr6	NT_007540	AL137007	76339097	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL137007	76339097	3	chr6	NT_007540	AL109922	76444776	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL109922	76444776	3	chr6	NT_007540	AL450394	76539261	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL450394	76539261	3	chr6	NT_007540	AL353669	76578249	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL450394	76539261	3			AC025050	76539261	1	30099	0	1454	31553
S/G/Y/R/B/O	NT_007540	AL353669	76578249	3	chr6	NT_007540	AL133322	76600594	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL353669	76578249	3			AC025050	76578249	1	21490	0	0	21490
S/G/Y/R/B/O	NT_007540	AL133322	76600594	3	chr6	NT_007540	AL365217	76773118	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL133322	76600594	3			AC025050	76539261	1	138877	2681	1470	143028
S/G/Y/R/B/O	NT_007540	AL133322	76600594	3			AC026943	76539261	1	21605	0	0	21605
S/G/Y/R/B/O	NT_007540	AL133322	76600594	3			AL357502	79358723	1	172260	0	0	172260
S/G/Y/R/B/O	NT_007540	AL133322	76600594	3			AL390782	79358723	1	23280	2778	7121	33179
S/G/Y/R/B/O	NT_007540	AL365217	76773118	3	chr6	NT_007540	AL589916	76877975	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL365217	76773118	3			AC026943	79358723	1	100164	0	0	100164
S/G/Y/R/B/O	NT_007540	AL365217	76773118	3			AL357502	220333819	1	56430	0	0	56430
S/G/Y/R/B/O	NT_007540	AL365217	76773118	3			AL390782	220333819	1	79106	3840	0	82946
S/G/Y/R/B/O	NT_007540	AL589916	76877975	3	chr6	NT_007540	AL132767	76910150	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL589916	76877975	3			AC026943	220333819	1	32152	0	0	32152
S/G/Y/R/B/O	NT_007540	AL589916	76877975	3			AL390782	76910150	1	20925	5126	0	26051
S/G/Y/R/B/O	NT_007540	AL132767	76910150	3	chr6	NT_007540	AL109612	76929647	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL109612	76929647	3	chr6	NT_007540	AL353153	77035820	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL109612	76929647	3	chr12	NT_028337	AC026948	60723443	1	32223	6809	2346	41378
S/G/Y/R/B/O	NT_007540	AL353153	77035820	3	chr6	NT_007540	AL450319	77131150	3	0	0	103	103
S/G/Y/R/B/O	NT_007540	AL353153	77035820	3			AC024480	76910150	1	48235	0	1141	49376
S/G/Y/R/B/O	NT_007540	AL450319	77131150	3	chr6	NT_007540	AL451055	77255930	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007540	AL450319	77131150	3	chr6	NT_007540	AC108669	79486483	1	19080	7893	21621	48594
S/G/Y/R/B/O	NT_007540	AL450319	77131150	3			AC024480	78266393	1	103633	13626	0	117259
S/G/Y/R/B/O	NT_007540	AL451055	77255930	3	chr6	NT_007540	AL391500	77279606	3	0	1998	0	1998
S/G/Y/R/B/O	NT_007540	AL391500	77279606	3	chr6	NT_007540	AL513492	77448826	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL391500	77279606	3			AC023369	77131150	1	14563	0	3512	18075
S/G/Y/R/B/O	NT_007540	AL513492	77448826	3	chr6	NT_007540	AL049842	77560503	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL513492	77448826	3			AC023369	77448826	1	81072	15702	1477	98251
S/G/Y/R/B/O	NT_007540	AL049842	77560503	3	chr6	NT_007540	AL132793	77639340	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL049842	77560503	3			AC023369	77279606	1	33310	2348	0	35658
S/G/Y/R/B/O	NT_007540	AL049842	77560503	3			AL365442	77279606	1	35346	9688	1618	46652
S/G/Y/R/B/O	NT_007540	AL132793	77639340	3	chr6	NT_007540	AC002485	77759775	3	67933	0	0	67933
S/G/Y/R/B/O	NT_007540	AL132793	77639340	3			AL365442	77759775	1	46881	12351	4696	63928
S/G/Y/R/B/O	NT_007540	AC002485	77759775	3	chr6	NT_007540	AL450164	77907300	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AC002485	77759775	3			AC055787	77759775	1	48690	13268	7868	69826
S/G/Y/R/B/O	NT_007540	AC002485	77759775	3			AL365442	77639340	1	21730	6319	0	28049
S/G/Y/R/B/O	NT_007540	AL450164	77907300	3	chr6	NT_007540	AL139334	78032251	3	0	0	100	100
S/G/Y/R/B/O	NT_007540	AL450164	77907300	3			AC055787	77639340	1	62850	24635	13928	101413
S/G/Y/R/B/O	NT_007540	AL139334	78032251	3	chr6	NT_007540	AL450336	78134161	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL139334	78032251	3			AL591001	77907300	2	40580	0	0	40580
S/G/Y/R/B/O	NT_007540	AL450336	78134161	3	chr6	NT_007540	AL590673	78259568	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL450336	78134161	3			AL591001	77907300	2	125503	0	0	125503
S/G/Y/R/B/O	NT_007540	AL590673	78259568	3	chr6	NT_007540	AL590995	78382704	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL590673	78259568	3			AL591001	78382704	2	10268	0	0	10268
S/G/Y/R/B/O	NT_007540	AL590995	78382704	3	chr6	NT_007540	AL590678	78494066	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL590678	78494066	3	chr6	NT_007540	AL590874	78641915	3	0	1994	0	1994
S/G/Y/R/B/O	NT_007540	AL590678	78494066	3			AC019132	78494066	1	107665	2702	0	110367
S/G/Y/R/B/O	NT_007540	AL590874	78641915	3	chr6	NT_007540	AL591004	78658007	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL591004	78658007	3	chr6	NT_007540	AL592081	78815852	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL591004	78658007	3			AC019132	78494066	1	10442	0	0	10442
S/G/Y/R/B/O	NT_007540	AL591004	78658007	3			AC021214	78494066	1	143505	4802	8887	157194
S/G/Y/R/B/O	NT_007540	AL591004	78658007	3			AL592074	79300983	2	159832	0	0	159832
S/G/Y/R/B/O	NT_007540	AL592081	78815852	3	chr6	NT_007540	AL591605	78817846	3	0	1996	0	1996
S/G/Y/R/B/O	NT_007540	AL591605	78817846	3	chr6	NT_007540	AL365503	78953340	3	2000	0	0	2000
S/G/Y/R/B/O	NT_007540	AL591605	78817846	3			AC016848	78817846	2	61756	0	0	61756
S/G/Y/R/B/O	NT_007540	AL365503	78953340	3	chr6	NT_007540	AL049860	79056997	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL365503	78953340	3			AC016848	78815852	2	86924	0	0	86924
S/G/Y/R/B/O	NT_007540	AL365503	78953340	3			AL512455	78815852	1	18732	0	0	18732
S/G/Y/R/B/O	NT_007540	AL049860	79056997	3	chr6	NT_007540	AL512368	79153364	3	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL049860	79056997	3			AL512455	78817846	1	32920	0	0	32920
S/G/Y/R/B/O	NT_007540	AL512368	79153364	3	chr6	NT_007540	AC025085	79300983	1	0	0	0	0
S/G/Y/R/B/O	NT_007540	AL512368	79153364	3			AL512455	78817846	1	56994	0	0	56994
S/G/Y/R/B/O	NT_007540	AC025085	79300983	1	chr6	NT_007540	AC073300	79358723	1	0	0	0	0
S/G/Y/R/B/O	NT_007540	AC025085	79300983	1	chr6	NT_007592	AL031178	59308517	3	54268	1803	1168	57239
S/G/Y/R/B/O	NT_007540	AC025085	79300983	1	chr6	NT_007592	AL121969	59167295	3	26710	13215	6603	46528
S/G/Y/R/B/O	NT_007540	AC025085	79300983	1	chr6	NT_007592	AL162581	59274624	3	27038	2102	1328	30468
S/G/Y/R/B/O	NT_007540	AC073300	79358723	1	chr6	NT_007540	AC108669	79486483	1	0	0	0	0
S/G/Y/R/B/O	NT_007540	AC073300	79358723	1			AC079979	9328391	1	22028	1626	3523	27177
S/G/Y/R/B/O	NT_007540	AC073300	79358723	1			AC079985	9328391	1	76023	16931	17367	110321
S/G/Y/R/B/O	NT_007540	AC073300	79358723	1			AC080065	9328391	1	26227	1622	7470	35319
S/G/Y/R/B/O	NT_007540	AC108669	79486483	1
S/G/Y/R/B/O	NT_007540	AC108669	79486483	1	chr6	NT_007540	AL450319	77131150	3	19080	7893	21621	48594
S/G/Y/R/B/O	NT_007540	AC108669	79486483	1			AC024480	78266393	1	11617	13419	11837	36873