Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004525

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004525	AC021883	215200910	1	chr1	NT_004525	AC027498	215203425	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC021883	215200910	1	chr1	NT_004525	AC044825	218144150	1	43492	5681	5709	54882
S/G/Y/R/B/O	NT_004525	AC021883	215200910	1	chr1	NT_004525	AL359742	218199407	2	16695	0	0	16695
S/G/Y/R/B/O	NT_004525	AC021883	215200910	1	chr1	NT_004525	AL592045	218026684	1	14903	4504	38317	57724
S/G/Y/R/B/O	NT_004525	AC027498	215203425	1	chr1	NT_004525	AL451047	215208851	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC027498	215203425	1	chr1	NT_004525	AC022922	216828134	1	10531	5123	0	15654
S/G/Y/R/B/O	NT_004525	AC027498	215203425	1	chr1	NT_004525	AL357912	217002219	3	87503	0	5784	93287
S/G/Y/R/B/O	NT_004525	AC027498	215203425	1	chr1	NT_004525	AL590547	216938685	3	54814	2802	0	57616
S/G/Y/R/B/O	NT_004525	AC027498	215203425	1	chr1	NT_004525	AL645769	216976500	3	22974	2300	0	25274
S/G/Y/R/B/O	NT_004525	AL451047	215208851	1	chr1	NT_004525	AC099065	215226846	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL451047	215208851	1	chr1	NT_004525	AL353689	218846962	3	32299	2456	0	34755
S/G/Y/R/B/O	NT_004525	AL451047	215208851	1	chr1	NT_004525	AL627308	219064364	2	39214	7562	6668	53444
S/G/Y/R/B/O	NT_004525	AL451047	215208851	1			AC083878	216976500	1	31272	7562	6555	45389
S/G/Y/R/B/O	NT_004525	AC099065	215226846	1	chr1	NT_004525	AC096542	215469728	1	69969	0	107	70076
S/G/Y/R/B/O	NT_004525	AC099065	215226846	1			AC021798	219064364	1	61370	4467	15983	81820
S/G/Y/R/B/O	NT_004525	AC096542	215469728	1	chr1	NT_004525	AL365438	215586348	1	36330	0	0	36330
S/G/Y/R/B/O	NT_004525	AC096542	215469728	1			AC021798	215469728	1	133339	3381	3435	140155
S/G/Y/R/B/O	NT_004525	AL365438	215586348	1	chr1	NT_004525	AC073186	215590273	3	6093	0	13533	19626
S/G/Y/R/B/O	NT_004525	AL365438	215586348	1	chr1	NT_004525	AL390122	215888842	1	70215	0	0	70215
S/G/Y/R/B/O	NT_004525	AL365438	215586348	1			AC024998	130024983	1	19246	18072	1989	39307
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3	chr1	NT_004525	AC073135	215757090	3	54107	0	0	54107
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3	chr19	NT_025920	AC008993	1	3	38460	0	0	38460
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3	chr7	NT_029998	AC099546	1	1	30555	0	0	30555
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3			AC005603	182771278	3	34566	0	0	34566
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3			AC115287	9831848	1	12113	2308	0	14421
S/G/Y/R/B/O	NT_004525	AC073186	215590273	3			AL627309	215586348	2	166701	0	0	166701
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr1	NT_004525	AL390122	215888842	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr19	NT_025920	AC010507	145244	3	39225	0	0	39225
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr11	NT_009407	AC069287	1	1	45360	0	12521	57881
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr19	NT_025920	AC092299	118302	3	21675	0	0	21675
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr7	NT_029998	AC097645	55204	3	40046	0	0	40046
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr7	NT_029998	AC099546	1	1	30468	0	0	30468
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr7	NT_029998	AC112517	46691	3	39180	0	0	39180
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3	chr1	NT_032954	AL669831	188205	1	18150	0	0	18150
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3			AC090118	246544326	3	39214	0	0	39214
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3			AC115287	46691	1	64707	0	0	64707
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3			AF109718	46691	3	39480	0	0	39480
S/G/Y/R/B/O	NT_004525	AC073135	215757090	3			AL627309	215586348	2	54110	0	0	54110
S/G/Y/R/B/O	NT_004525	AL390122	215888842	1	chr1	NT_004525	AC092809	216069750	3	0	2223	0	2223
S/G/Y/R/B/O	NT_004525	AL390122	215888842	1	chr1	NT_004525	AL365438	215586348	1	70215	0	0	70215
S/G/Y/R/B/O	NT_004525	AL390122	215888842	1			AC024998	188205	1	114660	28803	15811	159274
S/G/Y/R/B/O	NT_004525	AL390122	215888842	1			AC068290	188205	1	87238	0	0	87238
S/G/Y/R/B/O	NT_004525	AC092809	216069750	3	chr1	NT_004525	AC099790	216264747	1	3676	0	22656	26332
S/G/Y/R/B/O	NT_004525	AC092809	216069750	3			AC068290	215586348	1	58064	2812	589	61465
S/G/Y/R/B/O	NT_004525	AC099790	216264747	1	chr1	NT_004525	AC026235	216399350	1	46658	405	5663	52726
S/G/Y/R/B/O	NT_004525	AC099790	216264747	1	chr1	NT_004525	AC096537	216408055	1	49185	0	0	49185
S/G/Y/R/B/O	NT_004525	AC026235	216399350	1	chr1	NT_004525	AC096537	216408055	1	14317	0	94238	108555
S/G/Y/R/B/O	NT_004525	AC026235	216399350	1			AC012126	215888842	1	11896	0	0	11896
S/G/Y/R/B/O	NT_004525	AC096537	216408055	1	chr1	NT_004525	AL596330	216563767	3	2342	0	0	2342
S/G/Y/R/B/O	NT_004525	AC096537	216408055	1	chr1	NT_004525	AC099790	216264747	1	49185	0	0	49185
S/G/Y/R/B/O	NT_004525	AC096537	216408055	1			AC012126	216264747	1	16607	0	1068	17675
S/G/Y/R/B/O	NT_004525	AL596330	216563767	3	chr1	NT_004525	AL391811	216643424	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004525	AL596330	216563767	3	chr1	NT_004525	AC034298	216851258	1	50860	4678	0	55538
S/G/Y/R/B/O	NT_004525	AL596330	216563767	3			AC012126	216563767	1	74547	2120	0	76667
S/G/Y/R/B/O	NT_004525	AL391811	216643424	3	chr1	NT_004525	AC093560	216791849	1	91006	0	0	91006
S/G/Y/R/B/O	NT_004525	AL391811	216643424	3	chr1	NT_004525	AC034298	216851258	1	111015	11643	3909	126567
S/G/Y/R/B/O	NT_004525	AL391811	216643424	3			AC012126	216643424	1	47899	6317	4252	58468
S/G/Y/R/B/O	NT_004525	AC093560	216791849	1	chr1	NT_004525	AC022922	216828134	1	64486	7264	6128	77878
S/G/Y/R/B/O	NT_004525	AC093560	216791849	1	chr1	NT_004525	AC034298	216851258	1	60864	6885	2529	70278
S/G/Y/R/B/O	NT_004525	AC022922	216828134	1	chr1	NT_004525	AC034298	216851258	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC022922	216828134	1	chr1	NT_004525	AC027498	215203425	1	10531	5123	0	15654
S/G/Y/R/B/O	NT_004525	AC022922	216828134	1	chr1	NT_004525	AL590547	216938685	3	49157	0	5380	54537
S/G/Y/R/B/O	NT_004525	AC034298	216851258	1	chr1	NT_004525	AL590547	216938685	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC034298	216851258	1	chr1	NT_004525	AC093560	216791849	1	60864	6885	2529	70278
S/G/Y/R/B/O	NT_004525	AC034298	216851258	1	chr1	NT_004525	AL391811	216643424	3	111015	11643	3909	126567
S/G/Y/R/B/O	NT_004525	AC034298	216851258	1	chr1	NT_004525	AL596330	216563767	3	50860	4678	0	55538
S/G/Y/R/B/O	NT_004525	AC034298	216851258	1			AC012126	216938685	1	17932	8089	195	26216
S/G/Y/R/B/O	NT_004525	AL590547	216938685	3	chr1	NT_004525	AL645769	216976500	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL590547	216938685	3	chr1	NT_004525	AC022922	216828134	1	49157	0	5380	54537
S/G/Y/R/B/O	NT_004525	AL590547	216938685	3	chr1	NT_004525	AC027498	215203425	1	54814	2802	0	57616
S/G/Y/R/B/O	NT_004525	AL645769	216976500	3	chr1	NT_004525	AL357912	217002219	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL645769	216976500	3	chr1	NT_004525	AC027498	215203425	1	22974	2300	0	25274
S/G/Y/R/B/O	NT_004525	AL357912	217002219	3	chr1	NT_004525	AL162738	217130276	2	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL357912	217002219	3	chr1	NT_004525	AC027498	215203425	1	87503	0	5784	93287
S/G/Y/R/B/O	NT_004525	AL162738	217130276	2	chr1	NT_004525	AL596134	217250004	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL162738	217130276	2			AC027073	215203425	1	91579	12596	2792	106967
S/G/Y/R/B/O	NT_004525	AL596134	217250004	3	chr1	NT_004525	AC092811	217253926	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AC092811	217253926	3	chr1	NT_004525	AL356216	217444544	3	0	0	92	92
S/G/Y/R/B/O	NT_004525	AC092811	217253926	3			AC027073	217253926	1	37442	0	1058	38500
S/G/Y/R/B/O	NT_004525	AL356216	217444544	3	chr1	NT_004525	AC025060	217514101	1	38707	4730	4729	48166
S/G/Y/R/B/O	NT_004525	AL356216	217444544	3			AL513528	217253926	1	18051	0	0	18051
S/G/Y/R/B/O	NT_004525	AL356216	217444544	3			AL591380	217253926	1	58626	0	0	58626
S/G/Y/R/B/O	NT_004525	AC025060	217514101	1	chr1	NT_004525	AC021778	217529611	1	27137	12292	2402	41831
S/G/Y/R/B/O	NT_004525	AC025060	217514101	1	chr1	NT_004525	AC099066	217588404	3	17382	9763	6500	33645
S/G/Y/R/B/O	NT_004525	AC025060	217514101	1			AL160005	217588404	1	24047	9481	0	33528
S/G/Y/R/B/O	NT_004525	AC025060	217514101	1			AL513528	217444544	1	54591	18459	14176	87226
S/G/Y/R/B/O	NT_004525	AC025060	217514101	1			AL591380	217444544	1	89423	19127	11439	119989
S/G/Y/R/B/O	NT_004525	AC021778	217529611	1	chr1	NT_004525	AC099066	217588404	3	67391	0	9126	76517
S/G/Y/R/B/O	NT_004525	AC021778	217529611	1			AC058782	217514101	1	11842	0	0	11842
S/G/Y/R/B/O	NT_004525	AC021778	217529611	1			AL160005	217588404	1	39236	1600	0	40836
S/G/Y/R/B/O	NT_004525	AC021778	217529611	1			AL513528	217588404	1	91285	1558	5855	98698
S/G/Y/R/B/O	NT_004525	AC021778	217529611	1			AL591380	217588404	1	70692	1582	0	72274
S/G/Y/R/B/O	NT_004525	AC099066	217588404	3	chr1	NT_004525	AL591895	217737952	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC099066	217588404	3	chr1	NT_004525	AC025060	217514101	1	17382	9763	6500	33645
S/G/Y/R/B/O	NT_004525	AC099066	217588404	3			AL160005	217514101	1	34343	0	0	34343
S/G/Y/R/B/O	NT_004525	AC099066	217588404	3			AL513528	217514101	1	69229	0	0	69229
S/G/Y/R/B/O	NT_004525	AC099066	217588404	3			AL591380	217514101	1	71977	0	2332	74309
S/G/Y/R/B/O	NT_004525	AL591895	217737952	3	chr1	NT_004525	AL117348	217770459	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL591895	217737952	3			AC058782	217514101	1	35077	0	0	35077
S/G/Y/R/B/O	NT_004525	AL117348	217770459	3	chr1	NT_004525	AL133288	217896195	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL117348	217770459	3	chr1	NT_004525	AL512343	217947772	1	36827	0	0	36827
S/G/Y/R/B/O	NT_004525	AL117348	217770459	3			AC058782	217514101	1	80443	0	8032	88475
S/G/Y/R/B/O	NT_004525	AL133288	217896195	3	chr1	NT_004525	AL512343	217947772	1	51616	0	0	51616
S/G/Y/R/B/O	NT_004525	AL512343	217947772	1	chr1	NT_004525	AL592045	218026684	1	82516	0	0	82516
S/G/Y/R/B/O	NT_004525	AL512343	217947772	1	chr1	NT_004525	AC044825	218144150	1	25017	17582	13611	56210
S/G/Y/R/B/O	NT_004525	AL512343	217947772	1	chr1	NT_004525	AL117348	217770459	3	36827	0	0	36827
S/G/Y/R/B/O	NT_004525	AL592045	218026684	1	chr1	NT_004525	AC044825	218144150	1	72073	25679	20268	118020
S/G/Y/R/B/O	NT_004525	AL592045	218026684	1	chr1	NT_004525	AC021883	215200910	1	14903	4504	38317	57724
S/G/Y/R/B/O	NT_004525	AC044825	218144150	1	chr1	NT_004525	AL359742	218199407	2	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC044825	218144150	1	chr1	NT_004525	AC021883	215200910	1	43492	5681	5709	54882
S/G/Y/R/B/O	NT_004525	AC044825	218144150	1	chr1	NT_004525	AL512343	217947772	1	25017	17582	13611	56210
S/G/Y/R/B/O	NT_004525	AL359742	218199407	2	chr1	NT_004525	AL359704	218283612	3	70423	0	0	70423
S/G/Y/R/B/O	NT_004525	AL359742	218199407	2	chr1	NT_004525	AC021883	215200910	1	16695	0	0	16695
S/G/Y/R/B/O	NT_004525	AL359742	218199407	2			AC073830	215200910	1	43657	4594	11978	60229
S/G/Y/R/B/O	NT_004525	AL359742	218199407	2			AL671974	218026684	2	143502	0	0	143502
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3	chr1	NT_004525	AL357122	218455113	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3	chr1	NT_004525	AC021762	218693383	1	58572	0	1201	59773
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3			AC026277	218693383	1	34775	0	0	34775
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3			AC073830	218693383	1	89989	11362	59485	160836
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3			AL359982	218199407	1	46103	4861	0	50964
S/G/Y/R/B/O	NT_004525	AL359704	218283612	3			AL671974	218026684	2	84635	0	0	84635
S/G/Y/R/B/O	NT_004525	AL357122	218455113	3	chr1	NT_004525	AL365444	218508770	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL357122	218455113	3	chr1	NT_004525	AC021762	218693383	1	22467	0	0	22467
S/G/Y/R/B/O	NT_004525	AL357122	218455113	3			AC026277	218693383	1	55561	0	0	55561
S/G/Y/R/B/O	NT_004525	AL365444	218508770	3	chr1	NT_004525	AL359732	218687914	1	119594	0	0	119594
S/G/Y/R/B/O	NT_004525	AL365444	218508770	3	chr1	NT_004525	AC021762	218693383	1	15661	0	0	15661
S/G/Y/R/B/O	NT_004525	AL365444	218508770	3	chr1	NT_004525	AC073252	218692184	1	119175	7111	14927	141213
S/G/Y/R/B/O	NT_004525	AL365444	218508770	3			AC026277	218693383	1	97605	0	0	97605
S/G/Y/R/B/O	NT_004525	AL365444	218508770	3			AL359982	218687914	1	38209	9994	22601	70804
S/G/Y/R/B/O	NT_004525	AL359732	218687914	1	chr1	NT_004525	AC073252	218692184	1	76309	4549	7361	88219
S/G/Y/R/B/O	NT_004525	AL359732	218687914	1			AC026277	218687914	1	36666	0	0	36666
S/G/Y/R/B/O	NT_004525	AL359732	218687914	1			AL359982	218692184	1	23680	5034	7388	36102
S/G/Y/R/B/O	NT_004525	AL359732	218687914	1			U50871	218784056	3	33887	0	0	33887
S/G/Y/R/B/O	NT_004525	AC073252	218692184	1	chr1	NT_004525	AC021762	218693383	1	6903	0	0	6903
S/G/Y/R/B/O	NT_004525	AC073252	218692184	1	chr1	NT_004525	AL365444	218508770	3	119175	7111	14927	141213
S/G/Y/R/B/O	NT_004525	AC073252	218692184	1			AC026277	218693383	1	50986	4006	14208	69200
S/G/Y/R/B/O	NT_004525	AC073252	218692184	1			AL359982	218687914	1	23746	0	1443	25189
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1	chr1	NT_004525	AL391628	218784056	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1	chr1	NT_004525	AL357122	218455113	3	22467	0	0	22467
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1	chr1	NT_004525	AL359704	218283612	3	58572	0	1201	59773
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1	chr1	NT_004525	AL365444	218508770	3	15661	0	0	15661
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1			AC026277	218508770	1	77523	0	0	77523
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1			AC073830	218692184	1	23530	1815	38066	63411
S/G/Y/R/B/O	NT_004525	AC021762	218693383	1			AL359982	218283612	1	34770	4578	19162	58510
S/G/Y/R/B/O	NT_004525	AL391628	218784056	3	chr1	NT_004525	AL353689	218846962	3	2001	0	0	2001
S/G/Y/R/B/O	NT_004525	AL391628	218784056	3			U50871	218687914	3	54516	0	0	54516
S/G/Y/R/B/O	NT_004525	AL353689	218846962	3	chr1	NT_004525	AL627308	219064364	2	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL353689	218846962	3	chr1	NT_004525	AL451047	215208851	1	32299	2456	0	34755
S/G/Y/R/B/O	NT_004525	AL627308	219064364	2	chr1	NT_004525	AL606462	219232674	3	46073	0	0	46073
S/G/Y/R/B/O	NT_004525	AL627308	219064364	2	chr1	NT_004525	AL451047	215208851	1	39214	7562	6668	53444
S/G/Y/R/B/O	NT_004525	AL627308	219064364	2			AC083878	215208851	1	135534	7154	20680	163368
S/G/Y/R/B/O	NT_004525	AL606462	219232674	3	chr1	NT_004525	AL451054	219296963	1	3101	0	0	3101
S/G/Y/R/B/O	NT_004525	AL606462	219232674	3			AC083878	219232674	1	36388	2120	2405	40913
S/G/Y/R/B/O	NT_004525	AL606462	219232674	3			AL512842	219296963	1	45326	0	0	45326
S/G/Y/R/B/O	NT_004525	AL451054	219296963	1
S/G/Y/R/B/O	NT_004525	AL451054	219296963	1			AL512842	219064364	1	76295	0	12033	88328